ID CP000065; SV 1; circular; genomic DNA; STD; PRO; 4316 BP. XX AC CP000065; XX PR Project:PRJNA13478; XX DT 12-JAN-2006 (Rel. 86, Created) DT 08-MAR-2010 (Rel. 104, Last updated, Version 3) XX DE Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-IV, complete DE sequence. XX KW . XX OS Aster yellows witches'-broom phytoplasma AYWB OC Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; OC Candidatus Phytoplasma; Candidatus Phytoplasma asteris. OG Plasmid pAYWB-IV XX RN [1] RP 1-4316 RX DOI; 10.1128/JB.188.10.3682-3696.2006. RX PUBMED; 16672622. RA Bai X., Zhang J., Ewing A., Miller S.A., Radek A., Schevchenko D., RA Tsukerman K., Walunas T., Lapidus A., Campbell J.W., Hogenhout S.A.; RT "Living with genome instability: the adaptation of phytoplasmas to diverse RT environments of their insect and plant hosts"; RL J. Bacteriol. 188(10):3682-3696(2006). XX RN [2] RP 1-4316 RA Bai X., Hogenhout S.A.; RT ; RL Submitted (06-APR-2005) to the INSDC. RL Department of Entomology, The Ohio State University - OARDC, 1680 Madison RL Avenue, Wooster, OH 44691, USA XX DR GR; CP000065_GR. XX FH Key Location/Qualifiers FH FT source 1..4316 FT /organism="Aster yellows witches'-broom phytoplasma AYWB" FT /plasmid="pAYWB-IV" FT /host="Lactuca sativa" FT /mol_type="genomic DNA" FT /db_xref="taxon:322098" FT misc_feature 1..4316 FT /note="Sequencing Center: Integrated Genomics, Inc., 2201 FT W. Campbell Park Dr., Chicago IL 60612" FT gene 1..1128 FT /gene="rep" FT /locus_tag="AYWB_pIV01" FT /note="pAYWBIV01" FT CDS 1..1128 FT /codon_start=1 FT /transl_table=11 FT /gene="rep" FT /locus_tag="AYWB_pIV01" FT /product="replication protein" FT /db_xref="GOA:Q2NID8" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR002631" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q2NID8" FT /protein_id="ABC65805.1" FT /translation="MKLKICELVINSDKINKTKIENILELKKKAIQNYAYILHDKDIYQ FT NEKEATLNGKNIGDLKKPHWHIYLRFNYAHDTKHISQWFNTQDNFVSKIKGRFSDALMY FT MIHANRSDKHQYDEKAVVSKFDWKSEAQQDIFLREYKIDSRLEEILSKIQSGEIKECNS FT TNHISIIENNIYSSAIEEAVKYRNNTLKGMDRQMECVFITGLSGCGKTTLAKKIAKNKK FT YQTYISSGSNDVLDDYSRGEECIILDDLRSNCLGLSDLLKMLDNNTSSSVKSRYKNKVL FT ECKLIIITTVKSIDDFFEDIFKKDESIIQLKRRCKLHIKIDSKYIYSSIWNPLEMKYDL FT IDKKPNNLLNEFQLKTLSKKEAKEFIKQITNTDDI" FT gene 1420..1890 FT /locus_tag="AYWB_pIV02" FT /note="pAYWBIV02" FT CDS 1420..1890 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="AYWB_pIV02" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q2NID7" FT /protein_id="ABC65806.1" FT /translation="MQNLNLNIDAFIDKINYYVTYIITFLKYVFNSIIAIKNVDFSLFN FT IPNSIGIICHFLFAIFCILIFITLLVFLGSIWNIIKTIIKWILYPFKLLFKLIKWIFSP FT KSELKQPIKTNNLNQYDLNKLQRKINDLEYKLNLQKRQNVIKPFENKYQKRG" FT gene 1894..2376 FT /locus_tag="AYWB_pIV03" FT /note="pAYWBIV03" FT CDS 1894..2376 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="AYWB_pIV03" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR021348" FT /db_xref="UniProtKB/TrEMBL:Q2NID6" FT /protein_id="ABC65807.1" FT /translation="MKNNNHKNPKNKIFIIWGLFISGVILVLLMLLLLAINKPQPKTDT FT QNQQHLQSNINAEQEQQTYNRVINKIESEIDKLTQQQEQTPLLKYPPKIRYYDDGIKIF FT SIEKYNQDTGKLIKDIYYKNDGETIEYTVDYNSDGSILNTFYNPDGTVRDTYHSNE" FT gene 2369..2929 FT /locus_tag="AYWB_pIV04" FT /note="pAYWBIV04" FT CDS 2369..2929 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="AYWB_pIV04" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q2NID5" FT /protein_id="ABC65808.1" FT /translation="MNKKRKIILKIWIIFISILILIMLFLLGLRLPKLLKSKQQKTENQ FT VQNQSQYQIQYIHDTNKVQNIVRLLTELKTLKQLKNKQLQKQVEKQKETQPINNLDFFD FT PKFQNELYHKLSKSMDEQMSQFSQKDFVSSEIPFEQLNDNNKLVKDIAVVSLTIGAGVI FT SCVVLAPIFASVGPIAAPVALLL" FT gene 2951..3265 FT /gene="ssb" FT /locus_tag="AYWB_pIV05" FT /note="pAYWBIV05" FT CDS 2951..3265 FT /codon_start=1 FT /transl_table=11 FT /gene="ssb" FT /locus_tag="AYWB_pIV05" FT /product="single-stranded DNA binding protein" FT /db_xref="GOA:Q2NID4" FT /db_xref="InterPro:IPR000424" FT /db_xref="InterPro:IPR011344" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR016027" FT /db_xref="UniProtKB/TrEMBL:Q2NID4" FT /protein_id="ABC65809.1" FT /translation="MLNKVQLIGNITHDLEPTHINTNEGQISKLDFQIAVNNKDKTQFI FT PCVVFRNQAENMSMYLHKGSKVYLEGTLSIEKYTNNEGENKTATKVIVQKVIFLDNKDK FT " FT gene 3316..3651 FT /locus_tag="AYWB_pIV06" FT /note="pAYWBIV06" FT CDS 3316..3651 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="AYWB_pIV06" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q2NID3" FT /protein_id="ABC65810.1" FT /translation="MKKSEINKNTINFFKEMKSKGFKPEDFQRNYYFFEIKDFKAAGFT FT NDEISFFDYTINELKQKGFTNKQIDELSYYDEYYFGVDENEQNKIIDKLKNNGFTNELL FT KSIKLIV" XX SQ Sequence 4316 BP; 1791 A; 496 C; 555 G; 1474 T; 0 other; atgaaattaa agatttgtga acttgttatt aattctgata aaattaataa aactaaaata 60 gaaaatattt tagaacttaa aaaaaaagcc attcaaaatt atgcctatat tttacatgat 120 aaagatattt atcaaaatga aaaagaggct acattgaatg gtaaaaatat aggggatcta 180 aaaaaacctc attggcatat atatttaaga tttaattatg cacatgatac aaaacatatt 240 tctcaatggt ttaatacaca ggataatttt gtttccaaaa taaaaggtag atttagtgat 300 gctttaatgt atatgattca tgctaatcgt tctgataaac atcaatatga cgaaaaagca 360 gtggttagta agttcgactg gaaatcggaa gcacaacaag atattttcct gcgtgaatat 420 aaaatagact cccgtttaga agagatttta tctaaaatac aatcaggaga aataaaagag 480 tgcaacagca ctaaccacat ttctattata gagaataata tttattcttc agcaatagaa 540 gaagcagtta agtatagaaa caatactttg aaaggaatgg atagacaaat ggaatgtgtt 600 tttattacag gtttaagtgg ttgtggtaaa actacgttag ctaaaaaaat agctaaaaat 660 aaaaaatatc aaacttatat ttcatcaggt agtaatgatg ttttagatga ttatagtaga 720 ggcgaagaat gtattatttt agatgaccta cgttctaatt gtctaggttt atcagactta 780 ttaaaaatgt tagataataa tacttcatct tcagttaaga gtcgttataa aaataaagtt 840 ttagaatgta aattaattat tattacaaca gttaaaagta ttgatgattt ttttgaagat 900 attttcaaaa aagatgaaag cattattcaa ttaaaacgtc gttgtaaatt acatattaaa 960 atagattcta aatatattta ttctagtatt tggaatccat tggaaatgaa atatgattta 1020 atagataaaa aacctaataa tttattaaat gaatttcaat taaaaacttt gtcaaaaaaa 1080 gaagcaaaag agtttattaa acaaataact aatacagatg atatttaaat tatttctata 1140 cttaaatgtt tttttttgat tgtttttatg tgtattttac taggtttttt gatataatat 1200 aagtgtattc acagcaacaa taattaataa ttaataattt ataacatttt tatatgttaa 1260 aataattatg accttatata tatgttcgtt gctgtgcgta tatgtagggt catttttgtt 1320 ttgtaaagct cacattaaaa tataaaaaaa atagttatat aaatcaaccc tcttcgcaaa 1380 agaaacgatt tatataacta tcatgaaagg atgcattaaa tgcaaaacct taatttaaac 1440 atagacgcat ttattgataa aataaattac tatgttactt atattataac atttttaaaa 1500 tatgttttta acagtattat tgcaatcaaa aacgttgatt tcagtttatt caatatacca 1560 aatagtatag gaataatttg tcattttctt tttgctattt tttgcatttt aatctttatc 1620 accttgttag tttttttagg ttctatatgg aatattatta aaacaataat caaatggatt 1680 ttatatccgt ttaaattatt atttaaatta attaaatgga ttttctcacc taaatcagaa 1740 ttaaaacaac caattaaaac taataacttg aatcaatatg atttaaacaa attacaaaga 1800 aagataaatg atttagaata caaacttaat ttacaaaaaa gacaaaatgt aattaaacca 1860 tttgaaaaca aatatcaaaa aagaggttaa attatgaaaa acaataatca caaaaaccca 1920 aaaaataaaa tatttatcat ttggggttta tttattagtg gagttattct tgttctttta 1980 atgcttcttt tattagctat taataaacct caacctaaaa ctgataccca aaatcaacaa 2040 catttacaat ctaatattaa tgccgaacaa gaacaacaaa cctataatag ggttattaat 2100 aagatagaat ctgaaataga taaattaacc caacaacaag aacaaactcc attacttaaa 2160 tatcctccta aaataagata ttatgatgat ggaataaaga tcttttccat agaaaaatat 2220 aatcaagata caggtaaatt aattaaagac atttattata aaaatgatgg agaaacaata 2280 gaatatactg ttgattacaa ttctgatggt tctatcttaa acacttttta taacccagac 2340 ggaactgtta gagacactta tcattctaat gaataaaaaa agaaaaatta tattaaagat 2400 ttggattata tttatatcaa ttcttatttt aatcatgtta tttcttttag gtttaagatt 2460 acctaaatta cttaaatcaa aacaacaaaa aactgaaaat caagttcaaa accaatctca 2520 atatcaaatc caatatattc atgatactaa taaggttcaa aatattgtta gattattaac 2580 tgaattaaaa acattaaaac aattaaaaaa caaacaatta caaaaacaag ttgaaaaaca 2640 aaaagaaact caaccaataa ataatttaga tttctttgac cctaagtttc aaaatgaact 2700 ttatcataaa cttagtaaaa gtatggatga gcaaatgagt caattttctc aaaaagattt 2760 tgtttcatct gaaattccat ttgaacaatt aaatgacaat aataaattag ttaaagatat 2820 cgcagttgta agtttaacta ttggtgcagg agttattagc tgtgtagttc tagctcctat 2880 ttttgcatct gtaggtccaa ttgcagctcc tgttgcttta ttactttaat attaagaaag 2940 gagaaataaa atgttaaata aagttcaatt aataggtaat ataactcatg acttagagcc 3000 aacacatatt aatactaatg agggtcaaat atctaaatta gatttccaaa tagctgtaaa 3060 taataaagat aaaactcaat tcattccatg tgttgttttt agaaaccaag ctgaaaacat 3120 gagtatgtat ttacataaag gttcaaaagt atatttagaa ggaacgttat caattgaaaa 3180 atataccaat aacgaaggcg aaaataaaac tgctactaaa gtaatagttc aaaaagttat 3240 ttttttagat aataaagata aataaaacaa aggcccctat taatttaggg gctttagata 3300 gaaagtatta tatcaatgaa aaaaagtgaa atcaataaaa atacaattaa tttttttaaa 3360 gagatgaaat ctaaaggatt taaacctgaa gattttcaaa gaaattatta tttttttgaa 3420 attaaagatt ttaaagctgc tggatttaca aatgacgaaa tatcattttt tgattataca 3480 attaatgaat taaaacaaaa gggatttaca aataaacaaa ttgatgaatt aagttattat 3540 gatgaatatt attttggggt agatgaaaac gaacaaaaca aaataataga taaattaaaa 3600 aataatggat ttacaaatga attattaaaa tctattaaac ttatagttta atatagtaaa 3660 aaaataaata aaacaaaggc ccctattaaa ttaggggctt taaaaatata aaaatcgtct 3720 cccgcggaat gttaatttta atcaatctat taattttata ataaccttta aacacattat 3780 tttatatcta tatgacgttt caaatgacat ttaatatctt ttatctaacg cacataaata 3840 aaggtctaag atatctcgct tagcgagcta ggcgtccagc cgatgcatct taattatatt 3900 atgatacccc ctcctataaa gtcccctttt ggggatttag gggttttttt aaattaaaaa 3960 ttcgctaggt ttttcctagg ttttgttagt tttagtaaca tccctgagaa tatagataga 4020 aagatatata aaatcctcag tatttcccta ccatagaggg cttgtctcta tggtagggag 4080 aatggtagaa cgaattatat tgatttatta gtgttttcct aatgattttc aatttgcatt 4140 ttctaccatt tttaacttgt taaagtagaa catatatgtt ataattaaat tgagcgcctt 4200 tgctgcgtta ggcagtaaag gagtagcgaa aataaaaaaa ccagcgcctt gcccgtgaac 4260 tatcgggtaa ggagtagctg gtatccgtta aaaaatatta aaaaggataa attaaa 4316 //