ID CP000063; SV 1; circular; genomic DNA; STD; PRO; 4009 BP. XX AC CP000063; XX PR Project:PRJNA13478; XX DT 12-JAN-2006 (Rel. 86, Created) DT 08-MAR-2010 (Rel. 104, Last updated, Version 3) XX DE Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-II, complete DE sequence. XX KW . XX OS Aster yellows witches'-broom phytoplasma AYWB OC Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; OC Candidatus Phytoplasma; Candidatus Phytoplasma asteris. OG Plasmid pAYWB-II XX RN [1] RP 1-4009 RX DOI; 10.1128/JB.188.10.3682-3696.2006. RX PUBMED; 16672622. RA Bai X., Zhang J., Ewing A., Miller S.A., Radek A., Schevchenko D., RA Tsukerman K., Walunas T., Lapidus A., Campbell J.W., Hogenhout S.A.; RT "Living with genome instability: the adaptation of phytoplasmas to diverse RT environments of their insect and plant hosts"; RL J. Bacteriol. 188(10):3682-3696(2006). XX RN [2] RP 1-4009 RA Bai X., Hogenhout S.A.; RT ; RL Submitted (06-APR-2005) to the INSDC. RL Department of Entomology, The Ohio State University - OARDC, 1680 Madison RL Avenue, Wooster, OH 44691, USA XX DR GR; CP000063_GR. XX FH Key Location/Qualifiers FH FT source 1..4009 FT /organism="Aster yellows witches'-broom phytoplasma AYWB" FT /plasmid="pAYWB-II" FT /host="Lactuca sativa" FT /mol_type="genomic DNA" FT /db_xref="taxon:322098" FT misc_feature 1..4009 FT /note="Sequencing Center: Integrated Genomics, Inc., 2201 FT W. Campbell Park Dr., Chicago IL 60612" FT gene 1..1149 FT /gene="rep" FT /locus_tag="AYWB_pII01" FT /note="pAYWBII01" FT CDS 1..1149 FT /codon_start=1 FT /transl_table=11 FT /gene="rep" FT /locus_tag="AYWB_pII01" FT /product="replication protein" FT /db_xref="GOA:Q2NIE9" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR002078" FT /db_xref="UniProtKB/TrEMBL:Q2NIE9" FT /protein_id="ABC65794.1" FT /translation="MKLRICELVINANKITKSKIENILELKKKAIQNYAYILHDKDTYQ FT NEKEAQLNGKKIGDLKSPHYHIYLRFNYAYDTKHIAQWFNTQDNFVSKIKGRFSDALMY FT MTHANSSDKHQYDEKAVVSDFDWKSEIQKTNLNKQFKMNYARLKEINSQIISGEIKEYN FT IDERINVDEYYVYSAAIEKAFKYRVITLKRIKRQMECVFITGQSGSGKSTLAKKIAKDN FT KYNAYISSGSNDILDDYRGEECIILDDLRSNCLGLSDLLKMLDNNTASSVKSRYKNKVL FT ECKLIIITTVKSIDDFFEDIFRKDETIIQLKRRCTYYIEIDSKYIYYSYWDSIQNKYDL FT LNKEPNNLLNEFKIKSLSKQEARLKFKKSLKINLPTKDKDDI" FT gene 1441..1911 FT /locus_tag="AYWB_pII02" FT /note="pAYWBII02" FT CDS 1441..1911 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="AYWB_pII02" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q2NIE8" FT /protein_id="ABC65795.1" FT /translation="MQNLNLNIDAFIDKINYYVIYIITFLKYVFNSIIAIKNVDFSLFN FT IPNSIGIICHFLFAIFCILIFITLLVFLGSIWNIIKTIIKWILYPFKLLFKLIKWIFSP FT KSELKQPIKTNNLNQYDLNKLQRKINDLEYKLNLQKRQNVIKPFENKYQKRG" FT gene 1915..2397 FT /locus_tag="AYWB_pII03" FT /note="pAYWBII03" FT CDS 1915..2397 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="AYWB_pII03" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR021348" FT /db_xref="UniProtKB/TrEMBL:Q2NIE7" FT /protein_id="ABC65796.1" FT /translation="MKNNNHKNPKNKIFIIWGLFISGVILVFLILLLLAINKPQPKTDT FT QNQQHLQSNINAEQEQQTYNRVINKIESEIDKLTQQQEQTPLLKYPPKIRYYDDGIKIF FT SIEKYNQDTGKLIKDIYYKNDGETIEYTVDYNSDGSILNTFYNPDGTVRDTYHSNE" FT gene 3013..3327 FT /gene="ssb" FT /locus_tag="AYWB_pII04" FT /note="pAYWBII04" FT CDS 3013..3327 FT /codon_start=1 FT /transl_table=11 FT /gene="ssb" FT /locus_tag="AYWB_pII04" FT /product="single-stranded DNA binding protein" FT /db_xref="GOA:Q2NIE6" FT /db_xref="InterPro:IPR000424" FT /db_xref="InterPro:IPR011344" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR016027" FT /db_xref="UniProtKB/TrEMBL:Q2NIE6" FT /protein_id="ABC65797.1" FT /translation="MLNKVQLIGNITHDLEPTHINTNEGQISKLDFQIAVNNKDKTQFI FT PCVIFRNQAENMSMYLHKGSKVYLEGTLSIEKYTNNEGENKTATKVIVQKVIFLDNKDK FT " XX SQ Sequence 4009 BP; 1645 A; 475 C; 485 G; 1404 T; 0 other; atgaaattac gtatttgtga acttgttatt aatgctaata aaattactaa atctaaaata 60 gaaaatattt tagaacttaa aaaaaaagct attcaaaatt atgcctatat tttacatgat 120 aaagatactt atcaaaatga aaaagaggct caattaaatg gtaaaaaaat aggagatcta 180 aaatcccctc attatcatat atatttaaga tttaattatg catatgatac caaacatatc 240 gctcaatggt ttaataccca agataatttt gtttctaaaa ttaaaggcag atttagtgat 300 gctttaatgt atatgactca tgctaatagt tctgataaac atcaatatga cgaaaaagcg 360 gtagttagtg attttgattg gaaatcagaa atacaaaaaa ctaatttgaa taaacaattt 420 aaaatgaatt atgctagatt aaaagaaatt aattctcaaa ttatatcagg agaaattaaa 480 gaatataata ttgatgaaag aattaatgta gatgagtatt atgtatattc tgcagcaata 540 gaaaaagcat ttaaatatag agttattact ttaaaaagga ttaaaagaca aatggaatgt 600 gtttttatta caggtcaaag tggatctggt aaatctactt tagccaaaaa aatagctaaa 660 gataataaat ataatgccta tatttcatct ggttctaatg atattttaga tgattatcga 720 ggagaagaat gtattatttt agatgaccta cgttctaatt gtctaggttt atcagattta 780 ttaaaaatgt tagataataa tactgcctcc agtgttaaga gtcgttataa aaataaagta 840 ttagaatgta aattaattat tattactact gttaaaagta ttgatgattt ctttgaagat 900 atttttagaa aagatgaaac tattattcaa ttaaaacgtc gttgtactta ttatattgaa 960 atagattcaa aatatattta ttatagttat tgggattcaa ttcaaaataa atatgattta 1020 ttaaataaag aacccaataa tttattaaat gaatttaaaa ttaaatcttt atcaaagcaa 1080 gaagcaagat tgaaatttaa aaaatcctta aaaataaatt tacctacaaa agataaagat 1140 gatatttaaa atatatttat aattaaatgc tttttctatt ctttttatgt gtattttact 1200 agcttttttg atataatata agtgtattca cacggacaaa aatacaaatt aataatagtt 1260 tagcattttt atatgttaaa ataattaatg actctatata tatgtgcgtc cgtgtgctta 1320 tatgtagggt catttttgtt atctaaatcc cacattaaaa tatataaaaa aaatagttat 1380 ataaatcccg aatctcccaa agacaaagat ttatataact accatgaaag gatgcattaa 1440 atgcaaaacc ttaatttaaa catagacgca tttattgata aaataaatta ctatgttatt 1500 tatattataa catttttaaa atatgttttt aacagtatta ttgcaatcaa aaacgttgat 1560 ttcagtttat tcaatatacc aaatagtata ggaataattt gtcattttct ttttgctatt 1620 ttttgcattt taatatttat caccttgtta gtttttttag gttctatatg gaatattatt 1680 aaaacaataa tcaaatggat tttatatccg tttaaattat tatttaaatt aattaaatgg 1740 attttctcac ctaaatcaga attaaaacaa ccaattaaaa ctaataactt gaatcaatat 1800 gatttaaaca aattacaaag aaagataaat gatttagaat acaaacttaa tttacaaaaa 1860 agacaaaatg taattaaacc atttgaaaac aaatatcaaa aaagaggtta aattatgaaa 1920 aacaataatc acaaaaaccc aaaaaataaa atatttatca tttggggttt atttattagt 1980 ggagttattc ttgttttttt aatacttctt ttattagcta ttaataaacc tcaacctaaa 2040 actgataccc aaaatcaaca acatttacaa tctaatatta atgccgaaca agaacaacaa 2100 acctataata gggttattaa taagatagaa tctgaaatag ataaattaac ccaacaacaa 2160 gaacaaactc cattacttaa atatcctcct aaaataagat attatgatga tggaataaag 2220 atcttttcca tagaaaaata taatcaagat acaggtaaat taattaaaga catttattat 2280 aaaaatgatg gagaaacaat agaatatact gttgattaca attctgatgg ttctatctta 2340 aacacttttt ataacccaga cggaactgtt agagacactt atcattctaa tgaataaaaa 2400 aagaaaaatt atattaaaga tttggattat atttatatca attcttattt taatcctgtt 2460 attcctttta ggtttaaaat tacctaaatt gcttaaatta aaacaacaac aagataataa 2520 tcaagttgaa acccaatata aatattaaac tcaatatatt catgatactg ataaagttaa 2580 taatataatt ggattaatta attctttaaa acgtttaaaa actttaaagc aattaaaacc 2640 tcaaactgaa aaacaaaaag aaactcaacc aataaataat ctagatttct ttgaccctaa 2700 ggttcaaaat gatctttatc ataaacttag taaagaatta gataaaatac ctcaaattaa 2760 atccacttct aaattacctg aagttaatca gcttccagat gaagctaaac aaactgaata 2820 taaatatgtt gtaccagatt ttaaagatga aaaacaagaa cttaaagata tagcagttat 2880 aactttaact actggtgcgg ttgtaattac ttgttctgtt ttaactccta ttttatcctc 2940 tgtaggtcca ataggaacta ttgcaagtaa attagtttca attgcttaat ttaaatagaa 3000 aggagaaata aaatgttaaa taaagttcaa ttaatcggta atatcaccca tgacttagag 3060 ccaacacata ttaatactaa tgagggtcaa atatctaaat tagatttcca aatagctgta 3120 aataataaag ataaaactca attcattcca tgtgttattt ttagaaacca agctgaaaat 3180 atgagtatgt atttacataa aggttcaaaa gtatatttag aaggaacgtt atcaattgaa 3240 aaatatacca ataacgaagg cgaaaataaa actgctacta aagtaatagt tcaaaaagtt 3300 atttttttag ataataaaga taaataaaat aaaggcccct attaaattag gggctttaaa 3360 aatataaaat ttcaattgcg cggaatgtta attttaatca atctattaat tttataataa 3420 cctttaaaca cattatttta tatctatatg acgtttcaaa tgacatttaa tatcttttat 3480 ctaacgcaca taaataaagg tctaagatat ctcgcttagc gagctaggcg tccagccgat 3540 gcatcttaat tatattatga taccccctct tataaagtcc ccttttgggg atttaggggt 3600 tttttattta ttaatatttg ttaaaataat tatgacctta tatatgaagt ttttcgaaga 3660 ttcctaatat ataaggtcat ttttatacct aaaccttata tatatatgta tgtagtaaga 3720 tatataaaat cctcagcatt tccctgccat agagggcttg tctctatggc aggtagtaat 3780 tgtagtataa attattttat tttattgaat ttttctaata ttttttaact tttatatact 3840 acttttttta atgttttaat gttgtatata tatgttataa taatatcgag cgccttaccc 3900 gtgaactatc gggtaaggag tagcgagaac gaaccaaccg cctttgccgt gagtatcggt 3960 aaaggagtag gttggggagt ctacatataa aaaaaaggaa tcttcgaaa 4009 //