ID CP000062; SV 1; circular; genomic DNA; STD; PRO; 3972 BP. XX AC CP000062; XX PR Project:PRJNA13478; XX DT 12-JAN-2006 (Rel. 86, Created) DT 08-MAR-2010 (Rel. 104, Last updated, Version 3) XX DE Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-I, complete DE sequence. XX KW . XX OS Aster yellows witches'-broom phytoplasma AYWB OC Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; OC Candidatus Phytoplasma; Candidatus Phytoplasma asteris. OG Plasmid pAYWB-I XX RN [1] RP 1-3972 RX DOI; 10.1128/JB.188.10.3682-3696.2006. RX PUBMED; 16672622. RA Bai X., Zhang J., Ewing A., Miller S.A., Radek A., Schevchenko D., RA Tsukerman K., Walunas T., Lapidus A., Campbell J.W., Hogenhout S.A.; RT "Living with genome instability: the adaptation of phytoplasmas to diverse RT environments of their insect and plant hosts"; RL J. Bacteriol. 188(10):3682-3696(2006). XX RN [2] RP 1-3972 RA Bai X., Hogenhout S.A.; RT ; RL Submitted (06-APR-2005) to the INSDC. RL Department of Entomology, The Ohio State University - OARDC, 1680 Madison RL Avenue, Wooster, OH 44691, USA XX DR GR; CP000062_GR. XX FH Key Location/Qualifiers FH FT source 1..3972 FT /organism="Aster yellows witches'-broom phytoplasma AYWB" FT /plasmid="pAYWB-I" FT /host="Lactuca sativa" FT /mol_type="genomic DNA" FT /db_xref="taxon:322098" FT misc_feature 1..3972 FT /note="Sequencing Center: Integrated Genomics, Inc., 2201 FT W. Campbell Park Dr., Chicago IL 60612" FT gene 1..1119 FT /gene="repA" FT /locus_tag="AYWB_pI01" FT /note="pAYWBI01" FT CDS 1..1119 FT /codon_start=1 FT /transl_table=11 FT /gene="repA" FT /locus_tag="AYWB_pI01" FT /product="RepA" FT /db_xref="GOA:Q2NIF4" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="UniProtKB/TrEMBL:Q2NIF4" FT /protein_id="ABC65789.1" FT /translation="MKKTKFRLNTKDFFMTYSQCDLGKEKIYHHIKQLMASKNQEINYL FT SVCLENHADNNGVHSHVFLQLKKRYQVVNNRFFDIDGKHPEIERARTVQGSVDYVKKDG FT DFIEEGTPKDKKYITKNENDKLKKIIYDEIDRLKNEYYYDDNLTFNQVKKSLDDFILKT FT DRDFYYEKIDLIKKILNERFTKKKEELEDEEEYSKPDYSFNSFKTNSKTNEIIAAIQTQ FT LSVQSLGKRPKSIVIEGPSRLGKTEFILSYLTHINLHYNYTRGEFNFSKENHKNAYKIN FT IFDDISLTKIRKEGLIKDIIGGQKGFTVDVKYAPKRNISGKKLNIFLVNPDISFENYCE FT WSRNDGHKFHEYIEDNCIFIYIPDKLYEEINE" FT gene 2029..2499 FT /locus_tag="AYWB_pI02" FT /note="pAYWBI02" FT CDS 2029..2499 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="AYWB_pI02" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q2NIF3" FT /protein_id="ABC65790.1" FT /translation="MQNLNLNIDAFIDKINYYVTYIITFLKYVFNSIIAIKNVDFSLFN FT IPNSIGIICHFLFAIFCILIFITLLVFLGSIFNIIKTIIKCFLKPFKLLFKLIKWIFSP FT KSELKQPIKTNNLNQYDLNKLQRKINDLEYKLNLQKRQNVIKPFENKYQKRG" FT gene 2503..2988 FT /locus_tag="AYWB_pI03" FT /note="pAYWBI03" FT CDS 2503..2988 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="AYWB_pI03" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR021348" FT /db_xref="UniProtKB/TrEMBL:Q2NIF2" FT /protein_id="ABC65791.1" FT /translation="MKNNNHKNPKNKIFIIWGLFISGVILVFLILLLLAINKPQPKTDT FT QNPQHLNSKINNQQEQQTYNAIIKKIEKEVDKLTQQQEQTPSLKYPPTINYYGGNEKKI FT HDIEEYDQDTGKKIKETYYDFNGIVGYIAKYSKDTGDIIQKTFYNPDGTEKKVKHFN" FT gene 2991..3584 FT /locus_tag="AYWB_pI04" FT /note="pAYWBI04" FT CDS 2991..3584 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="AYWB_pI04" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q2NIF1" FT /protein_id="ABC65792.1" FT /translation="MNKKRKIILKIWIIFISILILILLLLLGLRLPKLFKSIQDKNKVK FT TQSQYQTQYIHDTNKVNNIIGLINSLKRLKTLKQLKPQTEKQKETQPINNLDFFDPKVQ FT NDLYHKLSKELDKIPQIKSTSKLPEVNQLPDEAKQTEYKYVVPDFKDEKQELKDIAVVT FT LTTGAVVITCSVLTPILSSVGPIGTIASKLVSIA" FT gene 3608..3922 FT /gene="ssb" FT /locus_tag="AYWB_pI05" FT /note="pAYWBI05" FT CDS 3608..3922 FT /codon_start=1 FT /transl_table=11 FT /gene="ssb" FT /locus_tag="AYWB_pI05" FT /product="single-stranded DNA binding protein" FT /db_xref="GOA:Q2NIE6" FT /db_xref="InterPro:IPR000424" FT /db_xref="InterPro:IPR011344" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR016027" FT /db_xref="UniProtKB/TrEMBL:Q2NIE6" FT /protein_id="ABC65793.1" FT /translation="MLNKVQLIGNITHDLEPTHINTNEGQISKLDFQIAVNNKDKTQFI FT PCVIFRNQAENMSMYLHKGSKVYLEGTLSIEKYTNNEGENKTATKVIVQKVIFLDNKDK FT " XX SQ Sequence 3972 BP; 1616 A; 521 C; 496 G; 1339 T; 0 other; atgaaaaaaa ctaagtttag attaaatact aaagattttt ttatgactta ttcacagtgt 60 gatttgggta aagaaaaaat ctatcatcat attaaacaat taatggcttc taaaaaccaa 120 gaaattaatt atttatcagt ttgtttagaa aaccatgcag ataataatgg cgttcattct 180 catgtatttt tacaattaaa aaaacgttat caagttgtaa ataatagatt ctttgacatt 240 gatggtaaac atccagaaat tgaaagagca cgcaccgttc aaggttcagt tgattacgta 300 aaaaaagatg gtgacttcat tgaagaaggc acccctaaag ataaaaaata tattactaaa 360 aatgaaaatg ataaattaaa aaaaataatc tatgatgaaa tagataggtt gaaaaatgaa 420 tattattatg atgataattt aacttttaat caagttaaaa aaagtcttga tgatttcata 480 ttaaagaccg accgtgattt ttattatgaa aaaatagact taattaaaaa aatattgaat 540 gaacgtttca ctaaaaaaaa agaagagtta gaagatgaag aagaatattc taaacctgat 600 tattctttca attcattcaa aactaactct aaaactaatg agataattgc tgcgattcaa 660 acacaattat cagtgcaatc attaggcaaa cgacctaaat ccattgtgat tgaaggacct 720 agtagactcg gtaaaaccga gtttatatta agttatctaa ctcacataaa ccttcactat 780 aattatacca gaggtgagtt taattttagc aaagaaaacc acaaaaatgc ttataaaatc 840 aatatttttg atgacataag tcttactaaa attagaaaag aaggtttgat aaaagatatt 900 ataggtggtc aaaaaggatt tacagttgat gtaaaatatg ctcctaaaag aaatatatct 960 ggaaagaagt taaatatctt tttagttaac cctgatattt catttgaaaa ttattgtgaa 1020 tggtctcgta atgacggtca taagtttcat gaatatatag aagataattg tattttcata 1080 tatatccctg ataagttata tgaagaaata aatgaataat taaatataaa aatcgtctcc 1140 cgcggaatgt taattttaat caatctatta attttataat aacctttaaa cacattattt 1200 tatatctata tgacgtttca aatgacattt aatatctttt atctaacgca cataaataaa 1260 ggtctaagat atctcgctta gcgagctagg cgtccagccg atgcatctta attatattat 1320 gataccccct cctataaagt ccccttttgg ggatttaggg gtttttttta cattaaaaat 1380 tcgttaggtt tttcctcaat cggttctatc taatttacag tatatagtta aatgtgtgta 1440 ccttttttca tttttcttag gtatttcctt gcttatgtgt gcgcgctgta ggattccagc 1500 gcaagcacac ataaggtttt tcctaatgat tttttataca cacatttata cacacattgc 1560 aatgtgtgta ctttttttat caatgtgtgt actttttcaa ttttaatcct tttttcccct 1620 cgcgccttgc ccgtgaacta tcgggtaagg agtagcgaga acgaaccaac cacctttgct 1680 gcgttaggca gtaaaggagt aggttggaga gtcaataatt aaaaaaaact tgtcgcagac 1740 aagttgcatt tttattatta ttttgttaga ttatattgtt atacgttaag tattttttga 1800 tataatataa gtgtattcat ctgacaacaa aaataattat tatttaattt taatatcaaa 1860 taaatgttaa aataattaat gactctatgt atatgtttgt cagatgacat atatgtaggg 1920 tcatttttgt tttgtaaagc tcacattaaa atataaaaaa atagttatat aaatcccact 1980 ctcgcaaaga caaagattta tataactatc cacgaaagga tgcattaaat gcaaaacctt 2040 aatttaaaca tagacgcatt tattgataaa ataaattact atgttactta tattataaca 2100 tttttaaaat atgtttttaa cagtattatt gcaatcaaaa acgttgattt cagtttattc 2160 aatataccaa atagtatagg aataatttgt cattttcttt ttgctatttt ttgcatttta 2220 atctttatca ctttattagt ttttttaggt tctatcttta acattataaa aacaataatc 2280 aaatgttttt taaaaccatt taaattatta tttaaattaa ttaaatggat tttctcacct 2340 aaatcagaat taaaacaacc aattaaaact aataacttga atcaatatga tttaaacaaa 2400 ttacaaagaa agataaatga tttagaatac aaacttaatt tacaaaaaag acaaaatgta 2460 attaaaccat ttgaaaacaa atatcaaaaa agaggttaaa ttatgaaaaa caataatcac 2520 aaaaacccaa aaaataaaat atttatcatt tggggtttat ttattagtgg agttattctt 2580 gtttttttaa tacttctttt attagctatt aataaacctc aacctaaaac tgatacccaa 2640 aatccacaac atttaaattc taaaattaat aatcaacaag aacaacaaac ctataatgca 2700 attattaaaa aaattgaaaa agaagttgat aaattaaccc aacaacaaga acaaactcca 2760 tcacttaaat atcctcccac aattaattat tacggtggta atgaaaaaaa gattcacgat 2820 atagaagaat acgaccaaga tacaggtaaa aaaatcaagg aaacatacta tgactttaat 2880 ggaattgttg gttatattgc aaaatatagc aaagacacag gtgatataat tcaaaaaact 2940 ttttacaacc cagacggaac tgaaaaaaaa gtaaagcatt ttaattaatc atgaataaaa 3000 aaagaaaaat tatattaaag atttggatta tatttatatc aattcttatt ttaatcctgt 3060 tattactttt aggtttaaga ttacctaaat tatttaaatc aattcaagat aaaaataaag 3120 tcaaaaccca atctcaatat caaactcaat atatccatga tactaataaa gttaataata 3180 taattggatt aattaattct ttaaaacgtt taaaaacttt aaagcaatta aaacctcaaa 3240 ctgaaaaaca aaaagaaact caaccaataa ataatctaga tttctttgac cctaaggttc 3300 aaaatgatct ttatcataaa cttagtaaag aattagataa aatacctcaa attaaatcca 3360 cttctaaatt acctgaagtt aatcagcttc cagatgaagc taaacaaact gaatataaat 3420 atgttgtacc agattttaaa gatgaaaaac aagaacttaa agatatagca gttgtaactt 3480 taactactgg tgcggttgta attacttgtt ctgttttaac tcctatttta tcctctgtag 3540 gtccaatagg aactattgca agtaaattag tttcaattgc ttaatttaaa tagaaaggag 3600 aaataaaatg ttaaataaag ttcaattaat tggaaacatt acccatgact tagagccaac 3660 acatattaat actaatgagg gtcaaatatc taaattagat tttcaaatag ctgtaaataa 3720 taaagataaa actcaattca ttccatgtgt tatttttaga aaccaagctg aaaacatgag 3780 tatgtattta cataaaggtt caaaagtata tttagaagga acgttatcaa ttgaaaaata 3840 taccaataac gaaggcgaaa ataaaactgc tactaaagta atagttcaaa aagttatttt 3900 tttagataat aaagataaat aaaataaagg cccctattta attaggggct ttagatagaa 3960 agtagtatat ca 3972 //