ID CM000671; SV 1; linear; genomic DNA; CON; HUM; 141213431 BP. XX AC CM000671; XX PR Project:PRJNA31257; XX DT 09-MAR-2009 (Rel. 100, Created) DT 29-SEP-2009 (Rel. 102, Last updated, Version 2) XX DE Homo sapiens chromosome 9, GRCh37 primary reference assembly. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RC Erratum:[Nature 2001 Aug 2;412(6846):565] RP 1-141213431 RX DOI; 10.1038/35057062. RX PUBMED; 11237011. RG International Human Genome Sequencing Consortium RA Lander E.S., Linton L.M., Birren B., Nusbaum C., Zody M.C., Baldwin J., RA Devon K., Dewar K., Doyle M., FitzHugh W., Funke R., Gage D., Harris K., RA Heaford A., Howland J., Kann L., Lehoczky J., LeVine R., McEwan P., RA McKernan K., Meldrim J., Mesirov J.P., Miranda C., Morris W., Naylor J., RA Raymond C., Rosetti M., Santos R., Sheridan A., Sougnez C., RA Stange-Thomann N., Stojanovic N., Subramanian A., Wyman D., Rogers J., RA Sulston J., Ainscough R., Beck S., Bentley D., Burton J., Clee C., RA Carter N., Coulson A., Deadman R., Deloukas P., Dunham A., Dunham I., RA Durbin R., French L., Grafham D., Gregory S., Hubbard T., Humphray S., RA Hunt A., Jones M., Lloyd C., McMurray A., Matthews L., Mercer S., Milne S., RA Mullikin J.C., Mungall A., Plumb R., Ross M., Shownkeen R., Sims S., RA Waterston R.H., Wilson R.K., Hillier L.W., McPherson J.D., Marra M.A., RA Mardis E.R., Fulton L.A., Chinwalla A.T., Pepin K.H., Gish W.R., RA Chissoe S.L., Wendl M.C., Delehaunty K.D., Miner T.L., Delehaunty A., RA Kramer J.B., Cook L.L., Fulton R.S., Johnson D.L., Minx P.J., Clifton S.W., RA Hawkins T., Branscomb E., Predki P., Richardson P., Wenning S., Slezak T., RA Doggett N., Cheng J.F., Olsen A., Lucas S., Elkin C., Uberbacher E., RA Frazier M., Gibbs R.A., Muzny D.M., Scherer S.E., Bouck J.B., RA Sodergren E.J., Worley K.C., Rives C.M., Gorrell J.H., Metzker M.L., RA Naylor S.L., Kucherlapati R.S., Nelson D.L., Weinstock G.M., Sakaki Y., RA Fujiyama A., Hattori M., Yada T., Toyoda A., Itoh T., Kawagoe C., RA Watanabe H., Totoki Y., Taylor T., Weissenbach J., Heilig R., Saurin W., RA Artiguenave F., Brottier P., Bruls T., Pelletier E., Robert C., Wincker P., RA Smith D.R., Doucette-Stamm L., Rubenfield M., Weinstock K., Lee H.M., RA Dubois J., Rosenthal A., Platzer M., Nyakatura G., Taudien S., Rump A., RA Yang H., Yu J., Wang J., Huang G., Gu J., Hood L., Rowen L., Madan A., RA Qin S., Davis R.W., Federspiel N.A., Abola A.P., Proctor M.J., Myers R.M., RA Schmutz J., Dickson M., Grimwood J., Cox D.R., Olson M.V., Kaul R., RA Raymond C., Shimizu N., Kawasaki K., Minoshima S., Evans G.A., RA Athanasiou M., Schultz R., Roe B.A., Chen F., Pan H., Ramser J., RA Lehrach H., Reinhardt R., McCombie W.R., de la Bastide M., Dedhia N., RA Blocker H., Hornischer K., Nordsiek G., Agarwala R., Aravind L., RA Bailey J.A., Bateman A., Batzoglou S., Birney E., Bork P., Brown D.G., RA Burge C.B., Cerutti L., Chen H.C., Church D., Clamp M., Copley R.R., RA Doerks T., Eddy S.R., Eichler E.E., Furey T.S., Galagan J., Gilbert J.G., RA Harmon C., Hayashizaki Y., Haussler D., Hermjakob H., Hokamp K., Jang W., RA Johnson L.S., Jones T.A., Kasif S., Kaspryzk A., Kennedy S., Kent W.J., RA Kitts P., Koonin E.V., Korf I., Kulp D., Lancet D., Lowe T.M., RA McLysaght A., Mikkelsen T., Moran J.V., Mulder N., Pollara V.J., RA Ponting C.P., Schuler G., Schultz J., Slater G., Smit A.F., Stupka E., RA Szustakowski J., Thierry-Mieg D., Thierry-Mieg J., Wagner L., Wallis J., RA Wheeler R., Williams A., Wolf Y.I., Wolfe K.H., Yang S.P., Yeh R.F., RA Collins F., Guyer M.S., Peterson J., Felsenfeld A., Wetterstrand K.A., RA Patrinos A., Morgan M.J., de Jong P., Catanese J.J., Osoegawa K., RA Shizuya H., Choi S., Chen Y.J.; RT "Initial sequencing and analysis of the human genome"; RL Nature 409(6822):860-921(2001). XX RN [2] RP 1-141213431 RX DOI; 10.1038/nature02465. RX PUBMED; 15164053. RA Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., RA Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., RA Almeida J.P., Ambrose K.D., Ashwell R.I., Babbage A.K., Babbage S., RA Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., RA Beasley H., Beasley O., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., RA Burford D., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., RA Chen Y., Clarke G., Clark S.Y., Clee C.M., Clegg S., Collier R.E., RA Corby N., Crosier M., Cummings A.T., Davies J., Dhami P., Dunn M., RA Dutta I., Dyer L.W., Earthrowl M.E., Faulkner L., Fleming C.J., RA Frankish A., Frankland J.A., French L., Fricker D.G., Garner P., RA Garnett J., Ghori J., Gilbert J.G., Glison C., Grafham D.V., Gribble S., RA Griffiths C., Griffiths-Jones S., Grocock R., Guy J., Hall R.E., RA Hammond S., Harley J.L., Harrison E.S., Hart E.A., Heath P.D., RA Henderson C.D., Hopkins B.L., Howard P.J., Howden P.J., Huckle E., RA Johnson C., Johnson D., Joy A.A., Kay M., Keenan S., Kershaw J.K., RA Kimberley A.M., King A., Knights A., Laird G.K., Langford C., Lawlor S., RA Leongamornlert D.A., Leversha M., Lloyd C., Lloyd D.M., Lovell J., RA Martin S., Mashreghi-Mohammadi M., Matthews L., McLaren S., McLay K.E., RA McMurray A., Milne S., Nickerson T., Nisbett J., Nordsiek G., Pearce A.V., RA Peck A.I., Porter K.M., Pandian R., Pelan S., Phillimore B., Povey S., RA Ramsey Y., Rand V., Scharfe M., Sehra H.K., Shownkeen R., Sims S.K., RA Skuce C.D., Smith M., Steward C.A., Swarbreck D., Sycamore N., Tester J., RA Thorpe A., Tracey A., Tromans A., Thomas D.W., Wall M., Wallis J.M., RA West A.P., Whitehead S.L., Willey D.L., Williams S.A., Wilming L., RA Wray P.W., Young L., Ashurst J.L., Coulson A., Blocker H., Durbin R., RA Sulston J.E., Hubbard T., Jackson M.J., Bentley D.R., Beck S., Rogers J., RA Dunham I.; RT "DNA sequence and analysis of human chromosome 9"; RL Nature 429(6990):369-374(2004). XX RN [3] RP 1-141213431 RX DOI; 10.1038/nature03001. RX PUBMED; 15496913. RG International Human Genome Sequencing Consortium RA ; RT "Finishing the euchromatic sequence of the human genome"; RL Nature 431(7011):931-945(2004). XX RN [4] RP 1-141213431 RG Genome Reference Consortium RA ; RT ; RL Submitted (24-FEB-2009) to the INSDC. RL NCBI, NIH, Bethesda, MD 20892, USA XX CC The DNA sequence is composed of genomic sequence, primarily CC finished clones that were sequenced as part of the Human Genome CC Project. PCR products and WGS shotgun sequence have been added CC where necessary to fill gaps or correct errors. All such additions CC are manually curated by GRC staff. For more information see: CC http://genomereference.org. XX CO join(gap(10000),GL000069.1:1..39964796,gap(50000),GL000070.1:1..401038, CO gap(50000),GL000071.1:1..464507,gap(50000),GL000072.1:1..375452,gap(50000), CO GL000073.1:1..1198162,gap(50000),GL000074.1:1..549743,gap(100000), CO GL000075.1:1..1936505,gap(100000),GL000076.1:1..465318,gap(50000), CO GL000077.1:1..595518,gap(100000),GL000078.1:1..499094,gap(100000), CO GL000079.1:1..157546,gap(50000),gap(3000000),gap(15000000),gap(100000), CO GL000080.1:1..450681,gap(50000),GL000081.1:1..1139474,gap(100000), CO GL000082.1:1..158462,gap(150000),GL000083.1:1..471702,gap(150000), CO GL000084.1:1..376183,gap(150000),GL000085.1:1..174765,gap(150000), CO GL000086.1:1..1229783,gap(100000),GL000087.1:1..187806,gap(50000), CO GL000088.1:1..178933,gap(100000),GL000089.1:1..62237592,gap(150000), CO GL000090.1:1..3818133,gap(50000),GL000091.1:1..2075804,gap(50000), CO GL000092.1:1..1936434,gap(50000),gap(10000)) XX FH Key Location/Qualifiers FH FT source 1..141213431 FT /organism="Homo sapiens" FT /chromosome="9" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gap 1..10000 FT /estimated_length=10000 FT misc_feature 10001..33993 FT /note="annotated region of clone" FT misc_feature 11114..11120 FT /note="Single clone region. Sequence generated from a short FT insert library derived from a single pUC clone" FT misc_feature 11176..11178 FT /note="Sequence from uni-directional dGTP big dye FT terminator reads only" FT CDS join(12134..12191,12293..12347,12722..12806,13094..13163, FT 13331..13439) FT /pseudo FT /locus_tag="XXyac-YRM2039.1-001" FT /product="pseudogene similar to part of DEAD/H FT (Asp-Glu-Ala-Asp/His) box polypeptide 11(CHL1-like helicase FT homolog, S. cerevisiae) DDX11" FT /note="match: proteins: Sw:Q96FC9 Sw:Q96FC9 Sw:Q96FC9" FT mRNA join(27657..30445,30758..30891) FT /locus_tag="XXyac-YRM2039.3-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AA215404.1 Em:AA418444.1 FT Em:AI262061.1 Em:AI310707.1 Em:AI453594.1 Em:AI867462.1 FT Em:AI887896.1 Em:AW118867.1 Em:AW271459.1 Em:BE464132.1 FT Em:BG197266.1 Em:BG215026.1 Em:BG940151.1 Em:BI823104.1 FT Em:BM310629.1 Em:BM310925.1 Em:BM668849.1 Em:BM691866.1 FT Em:BM693519.1 Em:BM920906.1 Em:BU570288.1 Em:BU728571.1 FT Em:BX105439.1 Em:CB049423.1 Em:R69057.1" FT CDS complement(join(14812..14941,15082..15151,15910..16069, FT 16723..16880,16972..17164,17347..17479,17719..17860, FT 18031..18175,18382..18496,24853..25004,29029..29259)) FT /pseudo FT /locus_tag="XXyac-YRM2039.2-001" FT /product="novel pseudogene" FT /note="match: proteins: Tr:Q8VDD8 Tr:Q8VDD8 Tr:Q9NSV7" FT polyA_signal 30869..30874 FT polyA_site 30891 FT misc_feature 31994 FT /note="Clone_left_end: RP11-143M1" FT misc_feature 33994..129899 FT /note="annotated region of clone" FT polyA_site complement(34394) FT polyA_signal complement(34417..34422) FT mRNA complement(join(34394..34957,35060..35264,35504..35841)) FT /locus_tag="RP11-143M1.1-001" FT /product="novel protein" FT /note="match: ESTs: Em:BM671686.1 Em:BM686056.1 FT Em:BM688247.1 Em:BM690710.1 Em:BM704543.1 Em:BQ637109.1 FT Em:BQ638680.1 Em:BQ640021.1 Em:R96138.1" FT /note="match: cDNAs: Em:AF346307.1" FT CDS complement(join(34921..34957,35060..35264,35504..35519)) FT /locus_tag="RP11-143M1.1-001" FT /standard_name="OTTHUMP00000108501" FT /product="novel protein" FT /protein_id="CAM13098.1" FT /translation="MLLTIETKSHYVAQAGLELLASSDPPTSASQSVGIIDMSHCTWPT FT LGKFLNPSKPHFSPITKGKDGNIFPTKFLSDALTELRLCT" FT mRNA complement(join(35028..35264,35504..35856)) FT /locus_tag="RP11-143M1.1-002" FT /product="novel protein" FT /note="match: ESTs: Em:BF726774.1 Em:BM709368.1 FT Em:BU732746.1 Em:H81630.1 Em:H92007.1 Em:H92090.1 FT Em:H92825.1 Em:W96259.1" FT CDS complement(join(35056..35264,35504..35519)) FT /locus_tag="RP11-143M1.1-002" FT /standard_name="OTTHUMP00000108502" FT /product="novel protein" FT /protein_id="CAM13099.1" FT /translation="MLLTIETKSHYVAQAGLELLASSDPPTSASQSVGIIDMSHCTWPT FT LGKFLNPSKPHFSPITKGKDGNIFPTKFL" FT mRNA complement(join(121503..121573,121961..122136, FT 123217..123282,123386..123454,AL356244.12:7080..7131, FT AL356244.12:18203..18255)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-006" FT /product="COBW domain containing 1" FT /note="match: ESTs: Em:W17257.1" FT mRNA complement(join(121971..122090,123217..123282, FT 123386..123454,AL356244.12:7080..7131, FT AL356244.12:18203..21547)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-002" FT /product="COBW domain containing 1" FT /note="match: ESTs: Em:AA164866.1 Em:AA311194.1 FT Em:AI114638.1 Em:AL596907.1 Em:AV747032.1 Em:AW368133.1 FT Em:AW500322.1 Em:AW966633.1 Em:BE620150.1 Em:BE620578.1 FT Em:BG257161.1 Em:BG483024.1 Em:BI752404.1 Em:BM724133.1 FT Em:BM797966.1 Em:BM826452.1 Em:BQ771969.1 Em:H10226.1 FT Em:H10282.1 Em:H19065.1 Em:H19091.1 Em:H40215.1" FT mRNA complement(join(121052..123282,123386..123454, FT AL356244.12:7080..7131,AL356244.12:18203..18241)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-004" FT /product="COBW domain containing 1" FT /note="match: ESTs: Em:AA382353.1 Em:AA419558.1 FT Em:AI191060.1 Em:AI436681.1 Em:AU185438.1 Em:AW780240.1 FT Em:BF967785.1 Em:BG193618.1 Em:BG426083.1 Em:BG429647.1 FT Em:BG619539.1 Em:BM789681.1 Em:BM977899.1 Em:R17798.1 FT Em:R43003.1 Em:W38832.1 Em:Z46181.1" FT CDS complement(52410..52680) FT /pseudo FT /locus_tag="RP11-143M1.7-001" FT /product="phosphoglucomutase 5 (PGM5) pseudogene" FT /note="match: proteins: Sw:P00949 Sw:P36871 Sw:P36871 FT Sw:P38652 Sw:Q15124 Tr:Q7ZYA3 Tr:Q8BVU7 Tr:Q8N527 FT Tr:Q9NU38" FT mRNA complement(join(121092..121573,123217..123282, FT 123386..123454,AL356244.12:7080..7131, FT AL356244.12:23406..23536,AL356244.12:24135..24179, FT AL356244.12:26810..26896,AL356244.12:28582..28628, FT AL356244.12:33668..33727)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-007" FT /product="COBW domain containing 1" FT /note="match: ESTs: Em:AW968751.1 Em:BQ183290.1 FT Em:BX114763.1" FT mRNA complement(join(121418..121573,121961..122090, FT 123217..123282,123386..123454,AL356244.12:7080..7131, FT AL356244.12:18203..18259,AL356244.12:23406..23528, FT AL356244.12:24135..24179,AL356244.12:26810..26896, FT AL356244.12:28582..28628,AL356244.12:34533..34570, FT AL356244.12:36079..36138,AL356244.12:38084..39706)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-003" FT /product="COBW domain containing 1" FT /note="match: cDNAs: Em:BC037212.1" FT mRNA complement(join(121410..121573,121961..122090, FT 123217..123282,123386..123454,AL356244.12:7080..7131, FT AL356244.12:18203..18259,AL356244.12:22610..22826, FT AL356244.12:24135..24179,AL356244.12:26810..26896, FT AL356244.12:28582..28628,AL356244.12:32102..32241, FT AL356244.12:33668..33754,AL356244.12:34533..34570, FT AL356244.12:36079..36138,AL356244.12:38084..38700)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-014" FT /product="COBW domain containing 1" FT /note="match: ESTs: Em:BG479068.1" FT /note="match: cDNAs: Em:AK097639.1" FT misc_feature 71454..71472 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 71622..71916 FT /note="Single clone region. Sequence from reads from a FT short insert library derived from a single pUC clone. FT Restriction digest data confirm the assembly" FT mRNA join(72701..72816,79345..79537,88742..88826) FT /locus_tag="RP11-143M1.2-002" FT /product="putative novel transcript" FT /note="match: ESTs: Em:CA406616.1" FT mRNA join(72706..72816,74882..75298) FT /locus_tag="RP11-143M1.2-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AA244092.1 Em:AL712102.1 FT Em:AW139550.1 Em:BF437454.1 Em:BF677651.1 Em:BX101640.1" FT mRNA join(72716..72816,74149..74205,74882..75298) FT /locus_tag="RP11-143M1.2-003" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AI418405.1 Em:AI669842.1 FT Em:BE645463.1 Em:BE858885.1 Em:BM661749.1 Em:BM690027.1" FT polyA_signal 75268..75273 FT polyA_site 75298 FT CDS complement(join(121467..121573,121961..122090, FT 123217..123282,123386..123454,AL356244.12:7080..7131, FT AL356244.12:18203..18259,AL356244.12:24135..24179, FT AL356244.12:26810..26896,AL356244.12:28582..28628, FT AL356244.12:34533..34570,AL356244.12:36079..36138, FT AL356244.12:44182..44273,AL356244.12:45371..45467, FT AL356244.12:47799..47885,AL356244.12:49824..49869)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-009" FT /standard_name="OTTHUMP00000020951" FT /product="COBW domain containing 1" FT /protein_id="CAH70542.1" FT /translation="MYFKRAARAFPVLLTGAGKTTLLNYILTEQHSKRVAVILNEFGEG FT SALEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGL FT ADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADA FT ILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQK FT KLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLK FT GLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERTNRLVLLGRNLDKDILKQLFIAT FT VTETEKQWTTRFQEDQVCT" FT mRNA complement(join(121041..121573,121961..122090, FT 123217..123282,123386..123454,AL356244.12:7080..7131, FT AL356244.12:18203..18259,AL356244.12:24135..24179, FT AL356244.12:26810..26896,AL356244.12:28582..28628, FT AL356244.12:34533..34570,AL356244.12:36079..36138, FT AL356244.12:44182..44273,AL356244.12:45371..45467, FT AL356244.12:47799..47885,AL356244.12:50917..51159)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-008" FT /product="COBW domain containing 1" FT /note="match: ESTs: Em:AI547297.1 Em:AL531614.1 FT Em:AL540639.1 Em:AL564114.1 Em:AL571299.1 Em:AL571836.1 FT Em:AL574299.1 Em:AV726523.1 Em:BE733086.1 Em:BE748851.1 FT Em:BE902045.1 Em:BF967542.1 Em:BG182127.1 Em:BG192568.1 FT Em:BG198677.1 Em:BG203817.1 Em:BG210116.1 Em:BG210117.1 FT Em:BG211675.1 Em:BG214392.1 Em:BG389609.1 Em:BG400454.1 FT Em:BG505513.1 Em:BG535280.1 Em:BG571246.1 Em:BG680192.1 FT Em:BG714033.1 Em:BI480763.1 Em:BI763336.1 Em:BI837610.1 FT Em:BM453645.1 Em:BM465382.1 Em:BM786305.1 Em:BM979814.1 FT Em:BM981318.1 Em:BQ228462.1 Em:BQ771563.1 Em:BQ775348.1 FT Em:BU683395.1" FT /note="match: cDNAs: Em:AF257330.2 Em:BC005996.1 FT Em:BC013432.1" FT CDS complement(join(121467..121573,121961..122090, FT 123217..123282,123386..123454,AL356244.12:7080..7131, FT AL356244.12:18203..18259,AL356244.12:24135..24179, FT AL356244.12:26810..26896,AL356244.12:28582..28628, FT AL356244.12:34533..34570,AL356244.12:36079..36138, FT AL356244.12:44182..44273,AL356244.12:45371..45467, FT AL356244.12:47799..47885,AL356244.12:50917..51070)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-008" FT /standard_name="OTTHUMP00000020950" FT /product="COBW domain containing 1" FT /note="match: proteins: Sw:Q8VEH6 Sw:Q99MB4 Sw:Q9BRT8 FT Sw:Q9BRT8 Sw:Q9BRT8" FT /protein_id="CAH70543.1" FT /translation="MLPAVGSADEEEDPAEEDCPELVPIETTQSEEEEKSGLGAKIPVT FT IITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELR FT NGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLD FT GIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINKTDLVPEEDVKKLRTTIRS FT INGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEV FT PGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDL FT EETPVSWKDDTERTNRLVLLGRNLDKDILKQLFIATVTETEKQWTTRFQEDQVCT" FT mRNA complement(join(121410..121573,121961..122090, FT 123217..123282,123386..123454,AL356244.12:7080..7131, FT AL356244.12:18203..18259,AL356244.12:24135..24179, FT AL356244.12:26810..26896,AL356244.12:28582..28628, FT AL356244.12:34533..34570,AL356244.12:36079..36138, FT AL356244.12:44182..44273,AL356244.12:45371..45467, FT AL356244.12:47799..47885,AL356244.12:49824..49921, FT AL356244.12:50917..51129)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-009" FT /product="COBW domain containing 1" FT /note="match: ESTs: Em:AL550443.1 Em:BE169657.1 FT Em:BE888989.1 Em:BG531478.1 Em:BG708266.1 Em:BG914102.1 FT Em:BM452484.1 Em:BQ351443.1" FT /note="match: cDNAs: Em:BC009573.1" FT mRNA complement(join(121409..121573,121961..122090, FT 123217..123282,123386..123454,AL356244.12:7080..7131, FT AL356244.12:24135..24179,AL356244.12:26810..26896, FT AL356244.12:28582..28628,AL356244.12:34533..34570, FT AL356244.12:36079..36138,AL356244.12:44182..44273, FT AL356244.12:45371..45467,AL356244.12:47799..47885, FT AL356244.12:50917..51122)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-012" FT /product="COBW domain containing 1" FT /note="match: cDNAs: Em:AF212253.1" FT CDS complement(join(121467..121573,121961..122090, FT 123217..123282,123386..123454,AL356244.12:7080..7131, FT AL356244.12:24135..24179,AL356244.12:26810..26896, FT AL356244.12:28582..28628,AL356244.12:34533..34570, FT AL356244.12:36079..36138,AL356244.12:44182..44273, FT AL356244.12:45371..45467,AL356244.12:47799..47885, FT AL356244.12:50917..51070)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-012" FT /standard_name="OTTHUMP00000020953" FT /product="COBW domain containing 1" FT /protein_id="CAH70544.1" FT /translation="MLPAVGSADEEEDPAEEDCPELVPIETTQSEEEEKSGLGAKIPVT FT IITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELR FT NGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLD FT GIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINKTDLVPEEDVKKLRTTIRS FT INGLGQILETQRSSLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLLWE FT KNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERTNRLVL FT LGRNLDKDILKQLFIATVTETEKQWTTRFQEDQVCT" FT mRNA complement(join(121410..121573,121961..122090, FT 123217..123282,123386..123454,AL356244.12:7080..7131, FT AL356244.12:18203..18259,AL356244.12:19936..20141, FT AL356244.12:22743..22826,AL356244.12:23228..23276, FT AL356244.12:23406..23528,AL356244.12:24135..24179, FT AL356244.12:26810..26896,AL356244.12:28582..28628, FT AL356244.12:33668..33754,AL356244.12:34533..34570, FT AL356244.12:36079..36138,AL356244.12:44182..44273, FT AL356244.12:45371..45467,AL356244.12:47799..47885, FT AL356244.12:57981..58111,AL356244.12:60623..60683, FT AL356244.12:60922..61080)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-001" FT /product="COBW domain containing 1" FT /note="match: cDNAs: Em:AK092175.1" FT mRNA complement(join(100804..101304,102740..102850)) FT /locus_tag="RP11-143M1.3-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BG191388.1" FT mRNA complement(join(101002..101304,102473..102541, FT 102740..102941)) FT /locus_tag="RP11-143M1.3-002" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AI208541.1 Em:AL079435.1 FT Em:AW070333.1" FT mRNA complement(join(112716..113067,113694..113754)) FT /locus_tag="RP11-143M1.4-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AW873619.1" FT mRNA complement(115991..118951) FT /gene="FOXD4" FT /locus_tag="RP11-143M1.5-001" FT /product="forkhead box D4" FT /note="match: cDNAs: Em:AF343004 Em:U13223" FT CDS complement(116800..118119) FT /gene="FOXD4" FT /locus_tag="RP11-143M1.5-001" FT /standard_name="OTTHUMP00000022747" FT /product="forkhead box D4" FT /note="match: proteins: Sw:Q12950" FT /protein_id="CAH70545.1" FT /translation="MNLPRAERLRSTPQRSLRDSDGEDGKIDVLGEEEDEDEEEAASQQ FT FLEQSLQPGLQVARWGGVALPREHIEGGGGPSDPSEFGTEFRAPPRSAAASEDARQPAK FT PPSSYIALITMAILQSPHKRLTLSGICAFISDRFPYYRRKFPAWQNSIRHNLSLNDCFV FT KIPREPGRPGKGNYWSLDPASQDMFDNGSFLRRRKRFQRHQPTPGAHLPHPFPLPAAHA FT ALHNPRPGPLLGAPAPPQPVPGAYPNTGPGRRPYALLHPHPPRYLLLSAPAYAGAPKKA FT EGADLATPAPFPCCSPHLVLSLGRRARVWRRHREADASLSALRVSCKGSGERVQGLRRV FT CPRPRGATAPCSSDRQACRTILQQQQRHQEEDCANGCAPTKGAVLGGHLSAASALLRYQ FT AVAEGSGLTSLAAPLGGEGTSPVFLVSPTPSSLAESAGPS" FT polyA_site complement(121038) FT polyA_signal complement(121057..121062) FT polyA_site complement(121089) FT polyA_signal complement(121103..121108) FT polyA_site complement(121409) FT polyA_signal complement(121428..121433) FT mRNA complement(join(121411..121573,121961..122090, FT 123217..123282,123386..123747)) FT /gene="CBWD1" FT /locus_tag="RP11-143M1.6-005" FT /product="COBW domain containing 1" FT /note="match: ESTs: Em:BM981795.1" FT misc_feature 125900 FT /note="Clone_left_end: RP11-174M15" FT misc_feature 198707..366237 FT /note="annotated region of clone" FT mRNA complement(212824..215741) FT /gene="C9orf66" FT /locus_tag="RP11-59O6.1-001" FT /product="chromosome 9 open reading frame 66" FT /note="match: ESTs: Em:AI478419.1 Em:BE048650.1 FT Em:BE326843.1 Em:BE463586.1 Em:BF589631.1 Em:BG054680.1 FT Em:BI560578.1" FT /note="match: cDNAs: Em:AK055720.1" FT CDS complement(214509..215396) FT /gene="C9orf66" FT /locus_tag="RP11-59O6.1-001" FT /standard_name="OTTHUMP00000022749" FT /product="chromosome 9 open reading frame 66" FT /note="match: proteins: Sw:Q5T8R8" FT /protein_id="CAI16111.1" FT /translation="MRHSVARPTRLPRRLSPFWDPATCKNLEGGAGEVVRGRDPRRLRT FT SRSTEILGEDLAGPSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPL FT HTSAGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRR FT VAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGR FT GPSAELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGE FT PHKAGEVGNHPRDS" FT mRNA join(214854..215029,271627..271729,276994..277086, FT 284375..284567,286461..286636) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-008" FT /product="dedicator of cytokinesis 8" FT /note="match: ESTs: Em:CF995096.1" FT mRNA join(214856..215029,271627..271729,286461..286636, FT 289510..289581,304581..304704,311954..312166, FT 317043..317128,325671..325737,328022..328171, FT 332398..332478,334225..334384,336582..>336592) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-003" FT /product="dedicator of cytokinesis 8" FT /note="match: cDNAs: Em:AK050543.1" FT CDS join(214977..215029,271627..271729,286461..286636, FT 289510..289581,304581..304704,311954..312166, FT 317043..317128,325671..325737,328022..328171, FT 332398..332478,334225..334384,336582..>336592) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-003" FT /standard_name="OTTHUMP00000096441" FT /product="dedicator of cytokinesis 8" FT /protein_id="CAM22535.1" FT /translation="MATLPSAERRAFALKINRYSSAEIRKQFTLPPNLGQYHRQSISTS FT GFPSLQLPQFYDPVEPVDFEGLLMTHLNSLDVQLAQELGDFTDDDLDVVFTPKECRTLQ FT PSLPEEGVELDPHVRDCVQTYIREWLIVNRKNQGSPEICGFKKTGSRKDFHKTLPKQTF FT ESETLECSEPAAQAGPRHLNVLCDVSGKGPVTACDFDLRSLQPDKRLENLLQQVSAEDF FT EKQNEEARRTNRQAELFALYPSVDEEDAVEIRPVPECPKEHLGNRILVKLLTLKFEIEI FT EPLFASIALYDVKERKKISENFHCDLNSDQFKGFLRAHTPSVAASSQARSAVFSVTYPS FT SDIYLVVKIEKVLQQGEIGDCAEPYTVIKESDGGKSKEKIEKLKLQAESFCQRLGKYRM FT PFAWAPISLSSFFNVSTLEREVTDVDSVVGRSS" FT mRNA complement(join(267966..268273,272905..273002)) FT /locus_tag="RP11-59O6.3-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AW275066.1" FT mRNA join(273048..273100,286461..286636,289510..289581, FT 304581..304704,311954..312166,317043..317128, FT 325671..325737,328022..328171,332398..332478, FT 334225..334384,336582..336718,339006..339099, FT 340159..340321,AL161725.13:1881..1998, FT AL161725.13:4093..4163,AL161725.13:5291..5429, FT AL161725.13:6048..6149,AL161725.13:10073..10168, FT AL161725.13:10840..11074,AL161725.13:13634..13798, FT AL161725.13:16376..16548,AL161725.13:20194..20289, FT AL161725.13:24334..24429,AL161725.13:30648..30797, FT AL161725.13:33009..33122,AL161725.13:38781..38936, FT AL161725.13:40793..40932,AL161725.13:48645..48814, FT AL161725.13:51931..52070,AL161725.13:54264..54446, FT AL161725.13:54812..54941,AL161725.13:55911..55998, FT AL161725.13:60748..60844,AL161725.13:62225..62359, FT AL161725.13:63565..63717,AL161725.13:66029..66187, FT AL161725.13:67738..67838,AL161725.13:68646..68838, FT AL161725.13:73108..73251,AL161725.13:75149..75280, FT AL161725.13:75738..75872,AL161725.13:77290..77379, FT AL161725.13:80233..80469,AL161725.13:83647..83790, FT AL161725.13:85874..85980,AL161725.13:97380..97550, FT AL161725.13:98022..99104) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-001" FT /product="dedicator of cytokinesis 8" FT /note="match: cDNAs: Em:AK074081.1 Em:AK090429.1 FT Em:BC019102.2" FT /note="match: ESTs: Em:AA251553.1 Em:AA824610.1 FT Em:AI422073.1 Em:AI769732.1 Em:AW207838.1 Em:AW337750.1 FT Em:AW504701.1 Em:AW845742.1 Em:AW959798.1 Em:AW993297.1 FT Em:BE931184.1 Em:BG107067.1 Em:BG236305.1 Em:BG388288.1 FT Em:BG532296.1 Em:BI833063.1 Em:BM457575.1 Em:BM479571.1 FT Em:BM680510.1 Em:BM683359.1 Em:BQ213752.1 Em:BQ226396.1 FT Em:BU430383.1 Em:BU532484.1 Em:BU963765.1 Em:CA503173.1 FT Em:CD701883.1 Em:CF272685.1" FT mRNA join(273050..273100,286461..286636,289510..289581, FT 304581..304704,311954..312166,317043..317128, FT 325671..325737,328022..328171,332398..332478, FT 334225..334384,336582..336718,339006..339099, FT 340159..340620) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-002" FT /product="dedicator of cytokinesis 8" FT /note="match: cDNAs: Em:AK093572.1 Em:AX748209.1" FT mRNA join(273059..273100,286461..286636,289510..289581, FT 304581..304704,311954..312166,317043..317128, FT 325671..325737,328022..328171,332398..332478, FT 334225..334384,336582..336718,339006..339099, FT 340159..340321,365591..366237,AL161725.13:101..415, FT AL161725.13:1881..1998,AL161725.13:3085..3310, FT AL161725.13:4093..4163,AL161725.13:5291..5429, FT AL161725.13:6048..6149,AL161725.13:10073..10168, FT AL161725.13:10840..11074,AL161725.13:13634..13798, FT AL161725.13:14142..15250) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-004" FT /product="dedicator of cytokinesis 8" FT /note="match: cDNAs: Em:BC045629.1" FT /note="match: ESTs: Em:CD243627.1" FT mRNA join(273084..273100,286461..286636,289510..289581, FT 304581..304704,311954..312166,317043..317128, FT 325671..325737,328022..328171,332398..332478, FT 334225..334384,336582..336718,339006..339099, FT 340159..340321,AL161725.13:1881..4163, FT AL161725.13:5291..5429,AL161725.13:6048..6149, FT AL161725.13:10073..10168,AL161725.13:10840..11074, FT AL161725.13:13634..13798,AL161725.13:16376..16548, FT AL161725.13:20194..20289,AL161725.13:24334..24429, FT AL161725.13:30648..30797,AL161725.13:33009..33122, FT AL161725.13:38781..38936,AL161725.13:40793..40932, FT AL161725.13:48645..48814,AL161725.13:51931..52070, FT AL161725.13:54264..54446,AL161725.13:54812..54941, FT AL161725.13:55911..55998,AL161725.13:60748..60844, FT AL161725.13:62225..62359,AL161725.13:63565..63717, FT AL161725.13:66029..66187,AL161725.13:67738..67838, FT AL161725.13:68646..68838,AL161725.13:73108..73251, FT AL161725.13:75149..75280,AL161725.13:75738..75872, FT AL161725.13:77290..77379,AL161725.13:80233..80469, FT AL161725.13:83647..83790,AL161725.13:85874..85980, FT AL161725.13:97380..97550,AL161725.13:98022..99104) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-006" FT /product="dedicator of cytokinesis 8" FT /note="match: cDNAs: Em:AL832270.1" FT CDS join(286509..286636,289510..289581,304581..304704, FT 311954..312166,317043..317128,325671..325737, FT 328022..328171,332398..332478,334225..334384, FT 336582..336718,339006..339099,340159..340321, FT AL161725.13:1881..1998,AL161725.13:4093..4163, FT AL161725.13:5291..5429,AL161725.13:6048..6149, FT AL161725.13:10073..10168,AL161725.13:10840..11074, FT AL161725.13:13634..13798,AL161725.13:16376..16548, FT AL161725.13:20194..20289,AL161725.13:24334..24429, FT AL161725.13:30648..30797,AL161725.13:33009..33122, FT AL161725.13:38781..38936,AL161725.13:40793..40932, FT AL161725.13:48645..48814,AL161725.13:51931..52070, FT AL161725.13:54264..54446,AL161725.13:54812..54941, FT AL161725.13:55911..55998,AL161725.13:60748..60844, FT AL161725.13:62225..62359,AL161725.13:63565..63717, FT AL161725.13:66029..66187,AL161725.13:67738..67838, FT AL161725.13:68646..68838,AL161725.13:73108..73251, FT AL161725.13:75149..75280,AL161725.13:75738..75872, FT AL161725.13:77290..77379,AL161725.13:80233..80469, FT AL161725.13:83647..83790,AL161725.13:85874..85980, FT AL161725.13:97380..97550,AL161725.13:98022..98082) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-001" FT /standard_name="OTTHUMP00000096442" FT /product="dedicator of cytokinesis 8" FT /note="match: proteins: Sw:Q8NF50" FT /protein_id="CAM22536.1" FT /translation="MTHLNSLDVQLAQELGDFTDDDLDVVFTPKECRTLQPSLPEEGVE FT LDPHVRDCVQTYIREWLIVNRKNQGSPEICGFKKTGSRKDFHKTLPKQTFESETLECSE FT PAAQAGPRHLNVLCDVSGKGPVTACDFDLRSLQPDKRLENLLQQVSAEDFEKQNEEARR FT TNRQAELFALYPSVDEEDAVEIRPVPECPKEHLGNRILVKLLTLKFEIEIEPLFASIAL FT YDVKERKKISENFHCDLNSDQFKGFLRAHTPSVAASSQARSAVFSVTYPSSDIYLVVKI FT EKVLQQGEIGDCAEPYTVIKESDGGKSKEKIEKLKLQAESFCQRLGKYRMPFAWAPISL FT SSFFNVSTLEREVTDVDSVVGRSSVGERRTLAQSRRLSERALSLEENGVGSNFKTSTLS FT VSSFFKQEGDRLSDEDLFKFLADYKRSSSLQRRVKSIPGLLRLEISTAPEIINCCLTPE FT MLPVKPFPENRTRPHKEILEFPTREVYVPHTVYRNLLYVYPQRLNFVNKLASARNITIK FT IQFMCGEDASNAMPVIFGKSSGPEFLQEVYTAVTYHNKSPDFYEEVKIKLPAKLTVNHH FT LLFTFYHISCQQKQGASVETLLGYSWLPILLNERLQTGSYCLPVALEKLPPNYSMHSAE FT KVPLQNPPIKWAEGHKGVFNIEVQAVSSVHTQDNHLEKFFTLCHSLESQVTFPIRVLDQ FT KISEMALEHELKLSIICLNSSRLEPLVLFLHLVLDKLFQLSVQPMVIAGQTANFSQFAF FT ESVVAIANSLHNSKDLSKDQHGRNCLLASYVHYVFRLPEVQRDVPKSGAPTALLDPRSY FT HTYGRTSAAAVSSKLLQARVMSSSNPDLAGTHSAADEEVKNIMSSKIADRNCSRMSYYC FT SGSSDAPSSPAAPRPASKKHFHEELALQMVVSTGMVRETVFKYAWFFFELLVKSMAQHV FT HNMDKRDSFRRTRFSDRFMDDITTIVNVVTSEIAALLVKPQKENEQAEKMNISLAFFLY FT DLLSLMDRGFVFNLIRHYCSQLSAKLSNLPTLISMRLEFLRILCSHEHYLNLNLFFMNA FT DTAPTSPCPSISSQNSSSCSSFQDQKIASMFDLTSEYRQQHFLTGLLFTELAAALDAEG FT EGISKVQRKAVSAIHSLLSSHDLDPRCVKPEVKVKIAALYLPLVGIILDALPQLCDFTV FT ADTRRYRTSGSDEEQEGAGAINQNVALAIAGNNFNLKTSGIVLSSLPYKQYNMLNADTT FT RNLMICFLWIMKNADQSLIRKWIADLPSTQLNRILDLLFICVLCFEYKGKQSSDKVSTQ FT VLQKSRDVKARLEEALLRGEGARGEMMRRRAPGNDRFPGLNENLRWKKEQTHWRQANEK FT LDKTKAELDQEALISGNLATEAHLIILDMQENIIQASSALDCKDSLLGGVLRVLVNSLN FT CDQSTTYLTHCFATLRALIAKFGDLLFEEEVEQCFDLCHQVLHHCSSSMDVTRSQACAT FT LYLLMRFSFGATSNFARVKMQVTMSLASLVGRAPDFNEEHLRRSLRTILAYSEEDTAMQ FT MTPFPTQVEELLCNLNSILYDTVKMREFQEDPEMLMDLMYRIAKSYQASPDLRLTWLQN FT MAEKHTKKKCYTEAAMCLVHAAALVAEYLSMLEDHSYLPVGSVSFQNISSNVLEESVVS FT EDTLSPDEDGVCAGQYFTESGLVGLLEQAAELFSTGGLYETVNEVYKLVIPILEAHREF FT RKLTLTHSKLQRAFDSIVNKDHKRMFGTYFRVGFFGSKFGDLDEQEFVYKEPAITKLPE FT ISHRLEAFYGQCFGAEFVEVIKDSTPVDKTKLDPNKAYIQITFVEPYFDEYEMKDRVTY FT FEKNFNLRRFMYTTPFTLEGRPRGELHEQYRRNTVLTTMHAFPYIKTRISVIQKEEFVL FT TPIEVAIEDMKKKTLQLAVAINQEPPDAKMLQMVLQGSVGATVNQGPLEVAQVFLAEIP FT ADPKLYRHHNKLRLCFKEFIMRCGEAVEKNKRLITADQREYQQELKKNYNKLKENLRPM FT IERKIPELYKPIFRVESQKRDSFHRSSFRKCETQLSQGS" FT CDS join(286509..286636,289510..289581,304581..304704, FT 311954..312166,317043..317128,325671..325737, FT 328022..328171,332398..332478,334225..334384, FT 336582..336718,339006..339099,340159..340325) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-002" FT /standard_name="OTTHUMP00000096440" FT /product="dedicator of cytokinesis 8" FT /protein_id="CAM22537.1" FT /translation="MTHLNSLDVQLAQELGDFTDDDLDVVFTPKECRTLQPSLPEEGVE FT LDPHVRDCVQTYIREWLIVNRKNQGSPEICGFKKTGSRKDFHKTLPKQTFESETLECSE FT PAAQAGPRHLNVLCDVSGKGPVTACDFDLRSLQPDKRLENLLQQVSAEDFEKQNEEARR FT TNRQAELFALYPSVDEEDAVEIRPVPECPKEHLGNRILVKLLTLKFEIEIEPLFASIAL FT YDVKERKKISENFHCDLNSDQFKGFLRAHTPSVAASSQARSAVFSVTYPSSDIYLVVKI FT EKVLQQGEIGDCAEPYTVIKESDGGKSKEKIEKLKLQAESFCQRLGKYRMPFAWAPISL FT SSFFNVSTLEREVTDVDSVVGRSSVGERRTLAQSRRLSERALSLEENGVGSNFKTSTLS FT VSSFFKQEGDRLSDEDLFKFLADYKRSSSLQRRVKSIPGLLRLEISTAPEIINCCLTPE FT MLPVKPFPENRTRPHKEILEFPTREVYVPHTVYR" FT misc_feature 303092 FT /note="Clone_right_end: RP11-174M15" FT mRNA join(311958..312166,314292..314466) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-007" FT /product="dedicator of cytokinesis 8" FT /note="match: ESTs: Em:AA903538.1 Em:AA903711.1" FT misc_feature 366138 FT /note="Clone_left_end: RP11-165F24" FT mRNA join(366229..366237,AL161725.13:101..415, FT AL161725.13:1881..1998,AL161725.13:4093..4163, FT AL161725.13:6048..6149,AL161725.13:10073..10168, FT AL161725.13:10840..11074,AL161725.13:13634..13798, FT AL161725.13:16376..16548,AL161725.13:20194..20289, FT AL161725.13:24334..24429,AL161725.13:30648..30797, FT AL161725.13:33009..33122,AL161725.13:38781..38962) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-009" FT /product="dedicator of cytokinesis 8" FT /note="match: cDNAs: Em:BC030518.1" FT /note="match: ESTs: Em:BI768494.1 Em:BI831482.1 FT Em:CR746781.1" FT misc_feature 366238..547316 FT /note="annotated region of clone" FT mRNA join(366251..366552,368018..368300,370230..370300, FT 371428..371566,372185..372286,376210..376305, FT 376977..377211,379771..379935,382513..382685, FT 386331..386426,390471..390566,396785..396934, FT 399146..399259,404918..405073,406930..407069, FT 414782..414951,418068..418207,420401..420583, FT 420949..421078,422048..422135,426885..426981, FT 428362..428496,429702..429854,432166..432324, FT 433875..433975,434783..434975,439245..439388, FT 441286..441417,441875..442009,443427..443516, FT 446370..446606,449784..449927,452011..452117, FT 463517..463687,464159..465255) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-005" FT /product="dedicator of cytokinesis 8" FT /note="match: ESTs: Em:BI828723.1" FT /note="match: cDNAs: Em:AY117695.1" FT CDS join(368103..368300,370230..370300,371428..371566, FT 372185..372286,376210..376305,376977..377211, FT 379771..379935,382513..382685,386331..386426, FT 390471..390566,396785..396934,399146..399259, FT 404918..405073,406930..407069,414782..414951, FT 418068..418207,420401..420583,420949..421078, FT 422048..422135,426885..426981,428362..428496, FT 429702..429854,432166..432324,433875..433975, FT 434783..434975,439245..439388,441286..441417, FT 441875..442009,443427..443516,446370..446606, FT 449784..449927,452011..452117,463517..463687, FT 464159..464219) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-005" FT /standard_name="OTTHUMP00000107257" FT /product="dedicator of cytokinesis 8" FT /protein_id="CAM13232.1" FT /translation="MCGEDASNAMPVRRETNICLKSGWAAHPCHFTQVRDSSVYKVRLF FT QANTAQHVQGLLCPGYQWGNRVIFGKSSGPEFLQEVYTAVTYHNKSPDFYEEVKIKLPA FT KLTVNHHLLFTFYHISCQQKQGASVETLLGYSWLPILLNERLQTGSYCLPVALEKLPPN FT YSMHSAEKVPLQNPPIKWAEGHKGVFNIEVQAVSSVHTQDNHLEKFFTLCHSLESQVTF FT PIRVLDQKISEMALEHELKLSIICLNSSRLEPLVLFLHLVLDKLFQLSVQPMVIAGQTA FT NFSQFAFESVVAIANSLHNSKDLSKDQHGRNCLLASYVHYVFRLPEVQRDVPKSGAPTA FT LLDPRSYHTYGRTSAAAVSSKLLQARVMSSSNPDLAGTHSAADEEVKNIMSSKIADRNC FT SRMSYYCSGSSDAPSSPAAPRPASKKHFHEELALQMVVSTGMVRETVFKYAWFFFELLV FT KSMAQHVHNMDKRDSFRRTRFSDRFMDDITTIVNVVTSEIAALLVKPQKENEQAEKMNI FT SLAFFLYDLLSLMDRGFVFNLIRHYCSQLSAKLSNLPTLISMRLEFLRILCSHEHYLNL FT NLFFMNADTAPTSPCPSISSQNSSSCSSFQDQKIASMFDLTSEYRQQHFLTGLLFTELA FT AALDAEGEGISKVQRKAVSAIHSLLSSHDLDPRCVKPEVKVKIAALYLPLVGIILDALP FT QLCDFTVADTRRYRTSGSDEEQEGAGAINQNVALAIAGNNFNLKTSGIVLSSLPYKQYN FT MLNADTTRNLMICFLWIMKNADQSLIRKWIADLPSTQLNRILDLLFICVLCFEYKGKQS FT SDKVSTQVLQKSRDVKARLEEALLRGEGARGEMMRRRAPGNDRFPGLNENLRWKKEQTH FT WRQANEKLDKTKAELDQEALISGNLATEAHLIILDMQENIIQASSALDCKDSLLGGVLR FT VLVNSLNCDQSTTYLTHCFATLRALIAKFGDLLFEEEVEQCFDLCHQVLHHCSSSMDVT FT RSQACATLYLLMRFSFGATSNFARVKMQVTMSLASLVGRAPDFNEEHLRRSLRTILAYS FT EEDTAMQMTPFPTQVEELLCNLNSILYDTVKMREFQEDPEMLMDLMYRIAKSYQASPDL FT RLTWLQNMAEKHTKKKCYTEAAMCLVHAAALVAEYLSMLEDHSYLPVGSVSFQNISSNV FT LEESVVSEDTLSPDEDGVCAGQYFTESGLVGLLEQAAELFSTGGLYETVNEVYKLVIPI FT LEAHREFRKLTLTHSKLQRAFDSIVNKDHKRMFGTYFRVGFFGSKFGDLDEQEFVYKEP FT AITKLPEISHRLEAFYGQCFGAEFVEVIKDSTPVDKTKLDPNKAYIQITFVEPYFDEYE FT MKDRVTYFEKNFNLRRFMYTTPFTLEGRPRGELHEQYRRNTVLTTMHAFPYIKTRISVI FT QKEEFVLTPIEVAIEDMKKKTLQLAVAINQEPPDAKMLQMVLQGSVGATVNQGPLEVAQ FT VFLAEIPADPKLYRHHNKLRLCFKEFIMRCGEAVEKNKRLITADQREYQQELKKNYNKL FT KENLRPMIERKIPELYKPIFRVESQKRDSFHRSSFRKCETQLSQGS" FT CDS join(372272..372286,376210..376305,376977..377211, FT 379771..379935,382513..382685,386331..386426, FT 390471..390566,396785..396934,399146..399259, FT 404918..405097) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-009" FT /standard_name="OTTHUMP00000107259" FT /product="dedicator of cytokinesis 8" FT /protein_id="CAM13233.1" FT /translation="MHSAEKVPLQNPPIKWAEGHKGVFNIEVQAVSSVHTQDNHLEKFF FT TLCHSLESQVTFPIRVLDQKISEMALEHELKLSIICLNSSRLEPLVLFLHLVLDKLFQL FT SVQPMVIAGQTANFSQFAFESVVAIANSLHNSKDLSKDQHGRNCLLASYVHYVFRLPEV FT QRDVPKSGAPTALLDPRSYHTYGRTSAAAVSSKLLQARVMSSSNPDLAGTHSAADEEVK FT NIMSSKIADRNCSRMSYYCSGSSDAPSSPAAPRPASKKHFHEELALQMVVSTGMVRETV FT FKYAWFFFELLVKSMAQHVHNMDKRDSFRRTRFSDRFMDDITTIVNVVTSEIAALLVKP FT QKENEQAEKMNISLAFFLYDLLSLMDRGFVFNLIRHYCSQLSAKLSNLPTLISMRLEFL FT RILCSHEHYLNLNLFFMNADTAPTSPCPSISSQVIKELFN" FT misc_feature 383721 FT /note="Clone_right_end: RP11-59O6" FT misc_feature 400373 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 600bp's by APALI and ECORI restriction enzyme FT digest data" FT mRNA join(AL158832.13:74342..74394,AL158832.13:87755..87930, FT AL158832.13:90804..90875,AL158832.13:105875..105998, FT AL158832.13:113248..113460,AL158832.13:118337..118422, FT AL158832.13:126965..127031,AL158832.13:129316..129465, FT AL158832.13:133692..133772,AL158832.13:135519..135678, FT AL158832.13:137876..138012,AL158832.13:140300..140393, FT AL158832.13:141453..141615,368018..368135,370230..370300, FT 371428..371566,372185..372286,376210..376305, FT 376977..377211,379771..379935,382513..382685, FT 386331..386426,390471..390566,396785..396934, FT 399146..399259,404918..405073,406930..407069, FT 414782..414951,418068..418207,420401..420583, FT 420949..421078,422048..422135,426885..426981, FT 428362..428496,429702..429854,432166..432324, FT 433875..433975,434783..434975,439245..439388, FT 441286..441417,441875..442009,443427..443516, FT 446370..446606,449784..449927,452011..452117, FT 463517..463687,464159..465241) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-001" FT /product="dedicator of cytokinesis 8" FT /note="match: ESTs: Em:AA251553.1 Em:AA824610.1 FT Em:AI422073.1 Em:AI769732.1 Em:AW207838.1 Em:AW337750.1 FT Em:AW504701.1 Em:AW845742.1 Em:AW959798.1 Em:AW993297.1 FT Em:BE931184.1 Em:BG107067.1 Em:BG236305.1 Em:BG388288.1 FT Em:BG532296.1 Em:BI833063.1 Em:BM457575.1 Em:BM479571.1 FT Em:BM680510.1 Em:BM683359.1 Em:BQ213752.1 Em:BQ226396.1 FT Em:BU430383.1 Em:BU532484.1 Em:BU963765.1 Em:CA503173.1 FT Em:CD701883.1 Em:CF272685.1" FT /note="match: cDNAs: Em:AK074081.1 Em:AK090429.1 FT Em:BC019102.2" FT mRNA join(AL158832.13:74353..74394,AL158832.13:87755..87930, FT AL158832.13:90804..90875,AL158832.13:105875..105998, FT AL158832.13:113248..113460,AL158832.13:118337..118422, FT AL158832.13:126965..127031,AL158832.13:129316..129465, FT AL158832.13:133692..133772,AL158832.13:135519..135678, FT AL158832.13:137876..138012,AL158832.13:140300..140393, FT AL158832.13:141453..141615,AL158832.13:166885..167531, FT 366238..366552,368018..368135,369222..369447, FT 370230..370300,371428..371566,372185..372286, FT 376210..376305,376977..377211,379771..379935, FT 380279..381387) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-004" FT /product="dedicator of cytokinesis 8" FT /note="match: ESTs: Em:CD243627.1" FT /note="match: cDNAs: Em:BC045629.1" FT mRNA join(AL158832.13:74378..74394,AL158832.13:87755..87930, FT AL158832.13:90804..90875,AL158832.13:105875..105998, FT AL158832.13:113248..113460,AL158832.13:118337..118422, FT AL158832.13:126965..127031,AL158832.13:129316..129465, FT AL158832.13:133692..133772,AL158832.13:135519..135678, FT AL158832.13:137876..138012,AL158832.13:140300..140393, FT AL158832.13:141453..141615,368018..370300,371428..371566, FT 372185..372286,376210..376305,376977..377211, FT 379771..379935,382513..382685,386331..386426, FT 390471..390566,396785..396934,399146..399259, FT 404918..405073,406930..407069,414782..414951, FT 418068..418207,420401..420583,420949..421078, FT 422048..422135,426885..426981,428362..428496, FT 429702..429854,432166..432324,433875..433975, FT 434783..434975,439245..439388,441286..441417, FT 441875..442009,443427..443516,446370..446606, FT 449784..449927,452011..452117,463517..463687, FT 464159..465241) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-006" FT /product="dedicator of cytokinesis 8" FT /note="match: cDNAs: Em:AL832270.1" FT CDS join(AL158832.13:87803..87930,AL158832.13:90804..90875, FT AL158832.13:105875..105998,AL158832.13:113248..113460, FT AL158832.13:118337..118422,AL158832.13:126965..127031, FT AL158832.13:129316..129465,AL158832.13:133692..133772, FT AL158832.13:135519..135678,AL158832.13:137876..138012, FT AL158832.13:140300..140393,AL158832.13:141453..141615, FT 368018..368135,370230..370300,371428..371566, FT 372185..372286,376210..376305,376977..377211, FT 379771..379935,382513..382685,386331..386426, FT 390471..390566,396785..396934,399146..399259, FT 404918..405073,406930..407069,414782..414951, FT 418068..418207,420401..420583,420949..421078, FT 422048..422135,426885..426981,428362..428496, FT 429702..429854,432166..432324,433875..433975, FT 434783..434975,439245..439388,441286..441417, FT 441875..442009,443427..443516,446370..446606, FT 449784..449927,452011..452117,463517..463687, FT 464159..464219) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-001" FT /standard_name="OTTHUMP00000096442" FT /product="dedicator of cytokinesis 8" FT /note="match: proteins: Sw:Q8NF50" FT /protein_id="CAM13234.1" FT /translation="MTHLNSLDVQLAQELGDFTDDDLDVVFTPKECRTLQPSLPEEGVE FT LDPHVRDCVQTYIREWLIVNRKNQGSPEICGFKKTGSRKDFHKTLPKQTFESETLECSE FT PAAQAGPRHLNVLCDVSGKGPVTACDFDLRSLQPDKRLENLLQQVSAEDFEKQNEEARR FT TNRQAELFALYPSVDEEDAVEIRPVPECPKEHLGNRILVKLLTLKFEIEIEPLFASIAL FT YDVKERKKISENFHCDLNSDQFKGFLRAHTPSVAASSQARSAVFSVTYPSSDIYLVVKI FT EKVLQQGEIGDCAEPYTVIKESDGGKSKEKIEKLKLQAESFCQRLGKYRMPFAWAPISL FT SSFFNVSTLEREVTDVDSVVGRSSVGERRTLAQSRRLSERALSLEENGVGSNFKTSTLS FT VSSFFKQEGDRLSDEDLFKFLADYKRSSSLQRRVKSIPGLLRLEISTAPEIINCCLTPE FT MLPVKPFPENRTRPHKEILEFPTREVYVPHTVYRNLLYVYPQRLNFVNKLASARNITIK FT IQFMCGEDASNAMPVIFGKSSGPEFLQEVYTAVTYHNKSPDFYEEVKIKLPAKLTVNHH FT LLFTFYHISCQQKQGASVETLLGYSWLPILLNERLQTGSYCLPVALEKLPPNYSMHSAE FT KVPLQNPPIKWAEGHKGVFNIEVQAVSSVHTQDNHLEKFFTLCHSLESQVTFPIRVLDQ FT KISEMALEHELKLSIICLNSSRLEPLVLFLHLVLDKLFQLSVQPMVIAGQTANFSQFAF FT ESVVAIANSLHNSKDLSKDQHGRNCLLASYVHYVFRLPEVQRDVPKSGAPTALLDPRSY FT HTYGRTSAAAVSSKLLQARVMSSSNPDLAGTHSAADEEVKNIMSSKIADRNCSRMSYYC FT SGSSDAPSSPAAPRPASKKHFHEELALQMVVSTGMVRETVFKYAWFFFELLVKSMAQHV FT HNMDKRDSFRRTRFSDRFMDDITTIVNVVTSEIAALLVKPQKENEQAEKMNISLAFFLY FT DLLSLMDRGFVFNLIRHYCSQLSAKLSNLPTLISMRLEFLRILCSHEHYLNLNLFFMNA FT DTAPTSPCPSISSQNSSSCSSFQDQKIASMFDLTSEYRQQHFLTGLLFTELAAALDAEG FT EGISKVQRKAVSAIHSLLSSHDLDPRCVKPEVKVKIAALYLPLVGIILDALPQLCDFTV FT ADTRRYRTSGSDEEQEGAGAINQNVALAIAGNNFNLKTSGIVLSSLPYKQYNMLNADTT FT RNLMICFLWIMKNADQSLIRKWIADLPSTQLNRILDLLFICVLCFEYKGKQSSDKVSTQ FT VLQKSRDVKARLEEALLRGEGARGEMMRRRAPGNDRFPGLNENLRWKKEQTHWRQANEK FT LDKTKAELDQEALISGNLATEAHLIILDMQENIIQASSALDCKDSLLGGVLRVLVNSLN FT CDQSTTYLTHCFATLRALIAKFGDLLFEEEVEQCFDLCHQVLHHCSSSMDVTRSQACAT FT LYLLMRFSFGATSNFARVKMQVTMSLASLVGRAPDFNEEHLRRSLRTILAYSEEDTAMQ FT MTPFPTQVEELLCNLNSILYDTVKMREFQEDPEMLMDLMYRIAKSYQASPDLRLTWLQN FT MAEKHTKKKCYTEAAMCLVHAAALVAEYLSMLEDHSYLPVGSVSFQNISSNVLEESVVS FT EDTLSPDEDGVCAGQYFTESGLVGLLEQAAELFSTGGLYETVNEVYKLVIPILEAHREF FT RKLTLTHSKLQRAFDSIVNKDHKRMFGTYFRVGFFGSKFGDLDEQEFVYKEPAITKLPE FT ISHRLEAFYGQCFGAEFVEVIKDSTPVDKTKLDPNKAYIQITFVEPYFDEYEMKDRVTY FT FEKNFNLRRFMYTTPFTLEGRPRGELHEQYRRNTVLTTMHAFPYIKTRISVIQKEEFVL FT TPIEVAIEDMKKKTLQLAVAINQEPPDAKMLQMVLQGSVGATVNQGPLEVAQVFLAEIP FT ADPKLYRHHNKLRLCFKEFIMRCGEAVEKNKRLITADQREYQQELKKNYNKLKENLRPM FT IERKIPELYKPIFRVESQKRDSFHRSSFRKCETQLSQGS" FT mRNA complement(join(454304..454606,456201..456358)) FT /locus_tag="RP11-165F24.3-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AI806327.1" FT polyA_signal 465225..465230 FT polyA_site 465255 FT mRNA join(470291..470374,470556..470682,473194..473273, FT 539516..539633,540508..540667,AL136979.16:51743..51862, FT AL136979.16:85657..88317,AL136979.16:104904..105101, FT AL136979.16:106011..106119,AL136979.16:107231..107470, FT AL136979.16:109601..109688,AL136979.16:113138..113357, FT AL136979.16:115645..115787,AL136979.16:117058..117258, FT AL136979.16:119344..119442,AL136979.16:120026..120958) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-001" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: ESTs: Em:AA277302.1 Em:AA359057.1 FT Em:AA449052.1 Em:AL045906.1 Em:AL110404.1 Em:AL549615.1 FT Em:AL709048.1 Em:AV687238.1 Em:AW949791.1 Em:AW957461.1 FT Em:BB659157.1 Em:BE276840.1 Em:BE277060.1 Em:BE708357.1 FT Em:BE892147.1 Em:BF857695.1 Em:BG292920.1 Em:BG397043.1 FT Em:BG696021.1 Em:BG762829.1 Em:BI152506.1 Em:BI339009.1 FT Em:BI517284.1 Em:BI773791.1 Em:BM453428.1 Em:BM702287.1 FT Em:BM826271.1 Em:BQ438792.1 Em:BQ878231.1 Em:BQ892236.1 FT Em:BQ929188.1" FT /note="match: cDNAs: Em:AK025428.1 Em:AK026421.1 FT Em:BC020040.1 Em:BC037495.2 Em:D79994.1" FT mRNA join(470592..470677,471449..471586,473194..473273, FT 484282..484491) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-008" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: ESTs: Em:AI638028.1 Em:AI656324.1 FT Em:BF510180.1" FT mRNA join(471467..471586,473194..473273,476628..476769) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-000" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: ESTs: Em:AI215464.1" FT CDS 477856..478349 FT /pseudo FT /locus_tag="RP11-165F24.2-001" FT /product="60S ribosomal protein L12 (RPL12) pseudogene" FT /note="match: proteins: Sw:O50003 Sw:O75000 Sw:P17079 FT Sw:P23358 Sw:P30050 Sw:P35979 Sw:P50883 Sw:P50884 Sw:P61866 FT Tr:O15577 Tr:P87267 Tr:Q9W1B9" FT mRNA join(487774..487803,495238..495610) FT /locus_tag="RP11-165F24.5-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AA813288.1" FT mRNA join(504702..504754,AL136979.16:51743..51862, FT AL136979.16:85657..88317,AL136979.16:104904..105101, FT AL136979.16:106011..106119,AL136979.16:107231..109688, FT AL136979.16:113138..113357,AL136979.16:115645..115787, FT AL136979.16:117058..117258,AL136979.16:119344..119442, FT AL136979.16:120026..120956) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-006" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: cDNAs: Em:BX648931.1" FT mRNA join(504703..504754,AL136979.16:51743..51862, FT AL136979.16:85657..88317,AL136979.16:104904..108982) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-002" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: cDNAs: Em:AL832454.2" FT mRNA join(504716..504754,AL136979.16:51743..51862, FT AL136979.16:85657..88317,AL136979.16:104904..105101, FT AL136979.16:106011..106119,AL136979.16:107231..107470, FT AL136979.16:109601..109688,AL136979.16:113138..113357, FT AL136979.16:115645..115787,AL136979.16:117058..117258, FT AL136979.16:119344..119442,AL136979.16:120026..120958) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-007" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: cDNAs: Em:AL833161.1" FT mRNA join(AL158832.13:167523..167531,366238..366552, FT 368018..368135,370230..370300,372185..372286, FT 376210..376305,376977..377211,379771..379935, FT 382513..382685,386331..386426,390471..390566, FT 396785..396934,399146..399259,404918..405099) FT /gene="DOCK8" FT /locus_tag="RP11-165F24.7-009" FT /product="dedicator of cytokinesis 8" FT /note="match: ESTs: Em:BI768494.1 Em:BI831482.1 FT Em:CR746781.1" FT /note="match: cDNAs: Em:BC030518.1" FT misc_feature 547216 FT /note="Clone_right_end: RP11-165F24" FT misc_feature 547317..625247 FT /note="annotated region of clone" FT mRNA join(547317..547341,549190..549531) FT /locus_tag="RP11-31F19.1-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AW449231.1" FT mRNA join(547318..547341,549107..549531) FT /locus_tag="RP11-31F19.1-002" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AI026915.1" FT misc_feature 625048 FT /note="Clone_left_end: RP11-130C19" FT misc_feature 625248..822246 FT /note="annotated region of clone" FT CDS 659986..660326 FT /pseudo FT /locus_tag="RP11-130C19.1-001" FT /product="translation initiation factor (SUI1) pseudogene" FT /note="match: proteins: Sw:P32911 Sw:P33278 Sw:P42678 FT Sw:P48024 Sw:P51971 Sw:P56330 Sw:Q9VZS3 Tr:Q29352" FT CDS join(676973..677009,710804..713464,730051..730289) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-002" FT /standard_name="OTTHUMP00000020958" FT /product="KN motif and ankyrin repeat domains 1" FT /protein_id="CAH70387.1" FT /translation="MAHTTKVNGSASGKAGDILSGDQDKEQKDPYFVETPYGYQLDLDF FT LKYVDDIQKGNTIKRLNIQKRRKPSVPCPEPRTTSGQQGIWTSTESLSSSNSDDNKQCP FT NFLIARSQVTSTPISKPPPPLETSLPFLTIPENRQLPPPSPQLPKHNLHVTKTLMETRR FT RLEQERATMQMTPGEFRRPRLASFGGMGTTSSLPSFVGSGNHNPAKHQLQNGYQGNGDY FT GSYAPAAPTTSSMGSSIRHSPLSSGISTPVTNVSPMHLQHIREQMAIALKRLKELEEQV FT RTIPVLQVKISVLQEEKRQLVSQLKNQRAASQINVCGVRKRSYSAGNASQLEQLSRARR FT SGGELYIDYEEEEMETVEQSTQRIKEFRQLTADMQALEQKIQDSSCEASSELRENGECR FT SVAVGAEENMNDIVVYHRGSRSCKDAAVGTLVEMRNCGVSVTEAMLGVMTEADKEIELQ FT QQTIESLKEKIYRLEVQLRETTHDREMTKLKQELQAAGSRKKVDKATMAQPLVFSKVVE FT AVVQTRDQMVGSHMDLVDTCVGTSVETNSVGISCQPECKNKVVGPELPMNWWIVKERVE FT MHDRCAGRSVEMCDKSVSVEVSVCETGSNTEESVNDLTLLKTNLNLKEVRSIGCGDCSV FT DVTVCSPKECASRGVNTEAVSQVEAAVMAVPRTADQDTSTDLEQVHQFTNTETATLIES FT CTNTCLSTLDKQTSTQTVETRTVAVGEGRVKDINSSTKTRSIGVGTLLSGHSGFDRPSA FT VKTKESGVGQININDNYLVGLKMRTIACGPPQLTVGLTASRRSVGVGDDPVGESLENPQ FT PQAPLGMMTGLDHYIERIQKLLAEQQTLLAENYSELAEAFGEPHSQMGSLNSQLISTLS FT SINSVMKSASTEELRNPDFQKTSLGKITGNYLGYTCKCGGLQSGSPLSSQTSQPEQEVG FT TSEGKPISSLDAFPTQEGTLSPVNLTDDQIAAGLYGNFSHSQSLASGF" FT CDS join(676973..677009,710804..713464,730051..730248, FT 731158..731266,732378..732617,734748..734835, FT 738285..738504,740792..740934,742205..742405, FT 744491..744589,745173..745235) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-001" FT /standard_name="OTTHUMP00000020957" FT /product="KN motif and ankyrin repeat domains 1" FT /protein_id="CAH70388.1" FT /translation="MAHTTKVNGSASGKAGDILSGDQDKEQKDPYFVETPYGYQLDLDF FT LKYVDDIQKGNTIKRLNIQKRRKPSVPCPEPRTTSGQQGIWTSTESLSSSNSDDNKQCP FT NFLIARSQVTSTPISKPPPPLETSLPFLTIPENRQLPPPSPQLPKHNLHVTKTLMETRR FT RLEQERATMQMTPGEFRRPRLASFGGMGTTSSLPSFVGSGNHNPAKHQLQNGYQGNGDY FT GSYAPAAPTTSSMGSSIRHSPLSSGISTPVTNVSPMHLQHIREQMAIALKRLKELEEQV FT RTIPVLQVKISVLQEEKRQLVSQLKNQRAASQINVCGVRKRSYSAGNASQLEQLSRARR FT SGGELYIDYEEEEMETVEQSTQRIKEFRQLTADMQALEQKIQDSSCEASSELRENGECR FT SVAVGAEENMNDIVVYHRGSRSCKDAAVGTLVEMRNCGVSVTEAMLGVMTEADKEIELQ FT QQTIESLKEKIYRLEVQLRETTHDREMTKLKQELQAAGSRKKVDKATMAQPLVFSKVVE FT AVVQTRDQMVGSHMDLVDTCVGTSVETNSVGISCQPECKNKVVGPELPMNWWIVKERVE FT MHDRCAGRSVEMCDKSVSVEVSVCETGSNTEESVNDLTLLKTNLNLKEVRSIGCGDCSV FT DVTVCSPKECASRGVNTEAVSQVEAAVMAVPRTADQDTSTDLEQVHQFTNTETATLIES FT CTNTCLSTLDKQTSTQTVETRTVAVGEGRVKDINSSTKTRSIGVGTLLSGHSGFDRPSA FT VKTKESGVGQININDNYLVGLKMRTIACGPPQLTVGLTASRRSVGVGDDPVGESLENPQ FT PQAPLGMMTGLDHYIERIQKLLAEQQTLLAENYSELAEAFGEPHSQMGSLNSQLISTLS FT SINSVMKSASTEELRNPDFQKTSLGKITGNYLGYTCKCGGLQSGSPLSSQTSQPEQEVG FT TSEGKPISSLDAFPTQEGTLSPVNLTDDQIAAGLYACTNNESTLKSIMKKKDGNKDSNG FT AKKNLQFVGINGGYETTSSDDSSSDESSSSESDDECDVIEYPLEEEEEEEDEDTRGMAE FT GHHAVNIEGLKSARVEDEMQVQECEPEKVEIRERYELSEKMLSACNLLKNTINDPKALT FT SKDMRFCLNTLQHEWFRVSSQKSAIPAMVGDYIAAFEAISPDVLRYVINLADGNGNTAL FT HYSVSHSNFEIVKLLLDADVCNVDHQNKAGYTPIMLAALAAVEAEKDMRIVEELFGCGD FT VNAKASQAGQTALMLAVSHGRIDMVKGLLACGADVNIQDDEGSTALMCASEHGHVEIVK FT LLLAQPGCNGHLEDNDGSTALSIALEAGHKDIAVLLYAHVNFAKAQSPGTPRLGRKTSP FT GPTHRGSFD" FT mRNA complement(join(673817..674379,680857..681046, FT 685528..685555)) FT /locus_tag="RP11-130C19.3-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BI488691.1" FT misc_feature 692043 FT /note="Clone_right_end: RP11-31F19" FT misc_feature 705337..705358 FT /note="Single clone region. ALU region. Assembly confirmed FT by restriction enzyme digest data" FT mRNA join(706889..707247,710804..713464,730051..730248, FT 731158..731266,732378..732617,734748..734835, FT 738285..738504,740792..740934,742205..742405, FT 744491..744589,745173..746103) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-005" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: ESTs: Em:AL039663.1 Em:BI548400.1 FT Em:BM147532.1 Em:BP287167.1" FT /note="match: cDNAs: Em:BC038116.2" FT CDS join(711241..713464,730051..730248,731158..731266, FT 732378..732617,734748..734835,738285..738504, FT 740792..740934,742205..742405,744491..744589, FT 745173..745235) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-005" FT /standard_name="OTTHUMP00000082439" FT /product="KN motif and ankyrin repeat domains 1" FT /protein_id="CAM13084.1" FT /translation="METRRRLEQERATMQMTPGEFRRPRLASFGGMGTTSSLPSFVGSG FT NHNPAKHQLQNGYQGNGDYGSYAPAAPTTSSMGSSIRHSPLSSGISTPVTNVSPMHLQH FT IREQMAIALKRLKELEEQVRTIPVLQVKISVLQEEKRQLVSQLKNQRAASQINVCGVRK FT RSYSAGNASQLEQLSRARRSGGELYIDYEEEEMETVEQSTQRIKEFRQLTADMQALEQK FT IQDSSCEASSELRENGECRSVAVGAEENMNDIVVYHRGSRSCKDAAVGTLVEMRNCGVS FT VTEAMLGVMTEADKEIELQQQTIESLKEKIYRLEVQLRETTHDREMTKLKQELQAAGSR FT KKVDKATMAQPLVFSKVVEAVVQTRDQMVGSHMDLVDTCVGTSVETNSVGISCQPECKN FT KVVGPELPMNWWIVKERVEMHDRCAGRSVEMCDKSVSVEVSVCETGSNTEESVNDLTLL FT KTNLNLKEVRSIGCGDCSVDVTVCSPKECASRGVNTEAVSQVEAAVMAVPRTADQDTST FT DLEQVHQFTNTETATLIESCTNTCLSTLDKQTSTQTVETRTVAVGEGRVKDINSSTKTR FT SIGVGTLLSGHSGFDRPSAVKTKESGVGQININDNYLVGLKMRTIACGPPQLTVGLTAS FT RRSVGVGDDPVGESLENPQPQAPLGMMTGLDHYIERIQKLLAEQQTLLAENYSELAEAF FT GEPHSQMGSLNSQLISTLSSINSVMKSASTEELRNPDFQKTSLGKITGNYLGYTCKCGG FT LQSGSPLSSQTSQPEQEVGTSEGKPISSLDAFPTQEGTLSPVNLTDDQIAAGLYACTNN FT ESTLKSIMKKKDGNKDSNGAKKNLQFVGINGGYETTSSDDSSSDESSSSESDDECDVIE FT YPLEEEEEEEDEDTRGMAEGHHAVNIEGLKSARVEDEMQVQECEPEKVEIRERYELSEK FT MLSACNLLKNTINDPKALTSKDMRFCLNTLQHEWFRVSSQKSAIPAMVGDYIAAFEAIS FT PDVLRYVINLADGNGNTALHYSVSHSNFEIVKLLLDADVCNVDHQNKAGYTPIMLAALA FT AVEAEKDMRIVEELFGCGDVNAKASQAGQTALMLAVSHGRIDMVKGLLACGADVNIQDD FT EGSTALMCASEHGHVEIVKLLLAQPGCNGHLEDNDGSTALSIALEAGHKDIAVLLYAHV FT NFAKAQSPGTPRLGRKTSPGPTHRGSFD" FT mRNA join(AL161725.13:104154..104237,AL161725.13:104419..104545, FT AL161725.13:107057..107136,AL161725.13:173379..173496, FT AL161725.13:174371..174530,676890..677009,710804..713464, FT 730051..730248,731158..731266,732378..732617, FT 734748..734835,738285..738504,740792..740934, FT 742205..742405,744491..744589,745173..746105) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-001" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: ESTs: Em:AA277302.1 Em:AA359057.1 FT Em:AA449052.1 Em:AL045906.1 Em:AL110404.1 Em:AL549615.1 FT Em:AL709048.1 Em:AV687238.1 Em:AW949791.1 Em:AW957461.1 FT Em:BB659157.1 Em:BE276840.1 Em:BE277060.1 Em:BE708357.1 FT Em:BE892147.1 Em:BF857695.1 Em:BG292920.1 Em:BG397043.1 FT Em:BG696021.1 Em:BG762829.1 Em:BI152506.1 Em:BI339009.1 FT Em:BI517284.1 Em:BI773791.1 Em:BM453428.1 Em:BM702287.1 FT Em:BM826271.1 Em:BQ438792.1 Em:BQ878231.1 Em:BQ892236.1 FT Em:BQ929188.1" FT /note="match: cDNAs: Em:AK025428.1 Em:AK026421.1 FT Em:BC020040.1 Em:BC037495.2 Em:D79994.1" FT mRNA join(732420..732617,734748..734835,735712..735780, FT 738285..738504,740792..740934,742205..742405, FT 744491..744589,745173..746102) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-003" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: cDNAs: Em:AL833015.1" FT CDS join(732508..732617,734748..734835,735712..735780, FT 738285..738504,740792..740934,742205..742405, FT 744491..744589,745173..745235) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-003" FT /standard_name="OTTHUMP00000020959" FT /product="KN motif and ankyrin repeat domains 1" FT /protein_id="CAH70389.1" FT /translation="MAEGHHAVNIEGLKSARVEDEMQVQECEPEKVEIRERYELSEKML FT SACNLLKNTINDPKALTSKDMGQVQWLTPMIPTLREADAGGSHERFCLNTLQHEWFRVS FT SQKSAIPAMVGDYIAAFEAISPDVLRYVINLADGNGNTALHYSVSHSNFEIVKLLLDAD FT VCNVDHQNKAGYTPIMLAALAAVEAEKDMRIVEELFGCGDVNAKASQAGQTALMLAVSH FT GRIDMVKGLLACGADVNIQDDEGSTALMCASEHGHVEIVKLLLAQPGCNGHLEDNDGST FT ALSIALEAGHKDIAVLLYAHVNFAKAQSPGTPRLGRKTSPGPTHRGSFD" FT mRNA join(734746..734835,738285..738504,740792..740934, FT 742205..742405,744491..746104) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-004" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: ESTs: Em:AA374682.1 Em:AA442905.1 FT Em:AW954370.1" FT /note="match: cDNAs: Em:AK025636.1" FT CDS join(734767..734835,738285..738504,740792..740934, FT 742205..742405,744491..744688) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-004" FT /standard_name="OTTHUMP00000020960" FT /product="KN motif and ankyrin repeat domains 1" FT /protein_id="CAH70390.1" FT /translation="MLSACNLLKNTINDPKALTSKDMRFCLNTLQHEWFRVSSQKSAIP FT AMVGDYIAAFEAISPDVLRYVINLADGNGNTALHYSVSHSNFEIVKLLLDADVCNVDHQ FT NKAGYTPIMLAALAAVEAEKDMRIVEELFGCGDVNAKASQAGQTALMLAVSHGRIDMVK FT GLLACGADVNIQDDEGSTALMCASEHGHVEIVKLLLAQPGCNGHLEDNDGSTALSIALE FT AGHKDIAVLLYAHVNFAKAQSPVSVVHLAFVNRLKSTRLVDPLPPGIDGRQILC" FT polyA_signal 746083..746088 FT polyA_site 746105 FT mRNA join(AL161725.13:138565..138617,676890..677009, FT 710804..713464,730051..730248,731158..731266, FT 732378..734835,738285..738504,740792..740934, FT 742205..742405,744491..744589,745173..746103) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-006" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: cDNAs: Em:BX648931.1" FT mRNA join(AL161725.13:138566..138617,676890..677009, FT 710804..713464,730051..734129) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-002" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: cDNAs: Em:AL832454.2" FT mRNA join(AL161725.13:138579..138617,676890..677009, FT 710804..713464,730051..730248,731158..731266, FT 732378..732617,734748..734835,738285..738504, FT 740792..740934,742205..742405,744491..744589, FT 745173..746105) FT /gene="KANK1" FT /locus_tag="RP11-130C19.4-007" FT /product="KN motif and ankyrin repeat domains 1" FT /note="match: cDNAs: Em:AL833161.1" FT misc_feature 809006 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 860bp using HindIII and EcoRI restriction FT enzyme digest data" FT misc_feature 822047 FT /note="Clone_left_end: RP11-143M15" FT misc_feature 822247..1001152 FT /note="annotated region of clone" FT mRNA join(841690..842192,846960..847143,893912..894195, FT 916763..916907,967985..969090) FT /gene="DMRT1" FT /locus_tag="RP11-143M15.1-001" FT /product="doublesex and mab-3 related transcription factor FT 1" FT /note="match: ESTs: Em:AA412330.1 Em:AA429597.1 FT Em:AA432207.1 Em:AI200978.1 Em:AI203184.1 Em:AI217960.1 FT Em:AI698612.1 Em:AI809359.1 Em:AL043067 Em:AW457053.1" FT /note="match: cDNAs: Em:AF123456 Em:AF130728.1 FT Em:AF192560.1 Em:AF192561.1 Em:AF202778.1 Em:AF211349.1 FT Em:AF216651.1 Em:AJ276801.1 Em:AL133300.1 Em:AL162131.1" FT CDS join(841839..842192,846960..847143,893912..894195, FT 916763..916907,967985..968139) FT /gene="DMRT1" FT /locus_tag="RP11-143M15.1-001" FT /standard_name="OTTHUMP00000020961" FT /product="doublesex and mab-3 related transcription factor FT 1" FT /note="match: proteins: Sw:Q9QZ59 Sw:Q9TT01 Sw:Q9Y5R6 FT Tr:Q925A6" FT /protein_id="CAB99335.1" FT /translation="MPNDEAFSKPSTPSEAPHAPGVPPQGRAGGFGKASGALVGAASGS FT SAGGSSRGGGSGSGASDLGAGSKKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKK FT CNLIAERQRVMAAQVALRRQQAQEEELGISHPIPLPSAAELLVKRENNGSNPCLMTECS FT GTSQPPPASVPTTAASEGRMVIQDIPAVTSRGHVENTPDLVSDSTYYSSFYQPSLFPYY FT NNLYNCPQYSMALAADSASGEVGNPLGGSPVKNSLRGLPGPYVPGQTGNQWQMKNMENR FT HAMSSQYRMHSYYPPPSYLGQSVPQFFTFEDAPSYPEARASVFSPPSSQDSGLVSLSSS FT SPISNKSTKAVLECEPASEPSSFTVTPVIEEDE" FT misc_feature 852951 FT /note="Clone_right_end: RP11-130C19" FT polyA_signal 969066..969071 FT polyA_site 969090 FT mRNA join(976964..977455,990041..991731) FT /gene="DMRT3" FT /locus_tag="RP11-143M15.2-001" FT /product="doublesex and mab-3 related transcription factor FT 3" FT /note="match: ESTs: Em:AA598944.1 Em:AA627687.1 FT Em:AI002773.1 Em:AI052121.1 Em:AI732189.1 Em:AI733646.1 FT Em:AV298122" FT /note="match: cDNAs: Em:AF193873.1 Em:AJ301581.1" FT CDS join(977002..977455,990041..991005) FT /gene="DMRT3" FT /locus_tag="RP11-143M15.2-001" FT /standard_name="OTTHUMP00000020962" FT /product="doublesex and mab-3 related transcription factor FT 3" FT /protein_id="CAB99336.1" FT /translation="MNGYGSPYLYMGGPVSQPPRAPLQRTPKCARCRNHGVLSWLKGHK FT RYCRFKDCTCEKCILIIERQRVMAAQVALRRQQANESLESLIPDSLRALPGPPPPGDAV FT AAPQPPPASQPSQPQPPRPAAELAAAAALRWTAEPQPGALQAQLAKPDLTEERLGDGKS FT ADNTEVFSDKDTDQRSSPDVAKSKGCFTPESPEIVSVEEGGYAVQKNGGNPESRPDSPK FT CHAEQNHLLIEGPSGTVSLPFSLKANRPPLEVLKKIFPNQKPTVLELILKGCGGDLVSA FT VEVLLSSRSSVTGAERTSAEPESLALPSNGHIFEHTLSSYPISSSKWSVGSAFRVPDTL FT RFSADSSNVVPSPLAGPLQPPFPQPPRYPLMLRNTLARSQSSPFLPNDVTLWNTMTLQQ FT QYQLRSQYVSPFPSNSTSVFRSSPVLPARATEDPRISIPDDGCPFVSKQSIYTEDDYDE FT RSDSSDSRTLNTSS" FT mRNA 989837..>990333 FT /gene="DMRT3" FT /locus_tag="RP11-143M15.2-002" FT /product="doublesex and mab-3 related transcription factor FT 3" FT /note="match: ESTs: Em:AW105228.1 Em:AW592669.1" FT /note="match: cDNAs: Em:AF217741.2" FT CDS 989998..>990333 FT /gene="DMRT3" FT /locus_tag="RP11-143M15.2-002" FT /standard_name="OTTHUMP00000020963" FT /product="doublesex and mab-3 related transcription factor FT 3" FT /note="match: proteins: Tr:Q9NRJ9" FT /protein_id="CAH70546.1" FT /translation="MHTRKRLTQLFCFPDLTEERLGDGKSADNTEVFSDKDTDQRSSPD FT VAKSKGCFTPESPEIVSVEEGGYAVQKNGGNPESRPDSPKCHAEQNHLLIEGPSGTVSL FT PFSLKANR" FT polyA_signal 991714..991719 FT polyA_site 991732 FT misc_feature 1001052 FT /note="Clone_right_end: RP11-143M15" FT misc_feature 1001153..1111150 FT /note="annotated region of clone" FT CDS join(1011085..1011386,1011710..1011799) FT /pseudo FT /locus_tag="RP11-147I11.1-001" FT /product="H3 histone pseudogene" FT /note="match: proteins: Sw:P84243 Sw:P84243 Sw:P84243 FT Sw:P84243 Sw:P84243 Sw:Q71LE2 Sw:Q8WSF1 Tr:P84244 Tr:Q6YP14 FT Tr:Q9D0H3" FT mRNA complement(join(1041219..1041345,1041868..1042520)) FT /locus_tag="RP11-147I11.2-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BM873334.1 Em:BM873531.1" FT mRNA join(1050354..1050482,1050620..1050775,1051570..1052138, FT 1053722..1053824,1055722..1055799,1056216..1057547) FT /gene="DMRT2" FT /locus_tag="RP11-147I11.3-004" FT /product="doublesex and mab-3 related transcription factor FT 2" FT /note="match: cDNAs: Em:AF284222.1 Em:AF284224.1 FT Em:BC030204.1" FT mRNA join(1050355..1050775,1051570..1052138,1053722..1053824, FT 1055722..1055872) FT /gene="DMRT2" FT /locus_tag="RP11-147I11.3-002" FT /product="doublesex and mab-3 related transcription factor FT 2" FT /note="match: cDNAs: Em:AF130729.1 Em:AF284221.1 FT Em:Y19052.1" FT /note="match: ESTs: Em:AI985131.1 Em:AW418913.1" FT CDS join(1051614..1052138,1053722..1053824,1055722..1055774) FT /gene="DMRT2" FT /locus_tag="RP11-147I11.3-002" FT /standard_name="OTTHUMP00000020965" FT /product="doublesex and mab-3 related transcription factor FT 2" FT /protein_id="CAH70588.1" FT /translation="MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGD FT CEDDEDDDGVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRER FT CTPAGGGAEPRKLSRTPKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMA FT AQVALRRQQATEDKKGLSGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYI FT MNHL" FT CDS join(1051614..1052138,1053722..1053824,1056216..1057273) FT /gene="DMRT2" FT /locus_tag="RP11-147I11.3-001" FT /standard_name="OTTHUMP00000020964" FT /product="doublesex and mab-3 related transcription factor FT 2" FT /note="match: proteins: Tr:Q8K185 Tr:Q9JJU0 Tr:Q9NPG6 FT Tr:Q9NQR6 Tr:Q9WVM0" FT /protein_id="CAH70589.1" FT /translation="MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGD FT CEDDEDDDGVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRER FT CTPAGGGAEPRKLSRTPKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMA FT AQVALRRQQATEDKKGLSGKQNNFERKAVYQRQVRAPSLLAKSILEGYRPIPAETYVGG FT TFPLPPPVSDRMRKRRAFADKELENIMLEREYKEREMLETSQAAALFLPNRMVPGPDYN FT SYKSAYSPSPVEPPSKDFCNFLPTCLDLTMQYSGSGNMELISSNVSVATTYRQYPLSSR FT FLVWPKCGPISDTLLYQQCLLNATTSVQALKPGASWDLKGARVQDGLSAEQDMMPSKLE FT GSLVLPHTPEIQTTRSDLQGHQAVPERSAFSPPRRNFSPIVDTDSLAAQGHVLTKISKE FT NTRHPLPLRHNPFHSLFQQTLTDKSGPELKTPFVKEAFEETPKKHRECLVKDNQKYTFT FT IDRCAKDLFVAKQVGTKLSVNEPLSFSVESILKRPSSAITRVSQ" FT mRNA join(1051614..1052138,1053722..1053824,1056216..1057552) FT /gene="DMRT2" FT /locus_tag="RP11-147I11.3-001" FT /product="doublesex and mab-3 related transcription factor FT 2" FT /note="match: cDNAs: Em:AF284225.1" FT mRNA join(1051614..1052138,1053722..1053824,1055722..1057552) FT /gene="DMRT2" FT /locus_tag="RP11-147I11.3-003" FT /product="doublesex and mab-3 related transcription factor FT 2" FT /note="match: cDNAs: Em:AF284223.1" FT /note="match: ESTs: Em:W93922.1 Em:Z24950.1" FT polyA_signal 1055845..1055850 FT polyA_site 1055872 FT polyA_signal 1057520..1057525 FT polyA_site 1057552 FT misc_feature 1111050 FT /note="Clone_right_end: RP11-147I11" FT misc_feature 1129123 FT /note="Clone_left_end: RP11-341G2" FT misc_feature 1133123..1251689 FT /note="annotated region of clone" FT CDS complement(1151807..1152140) FT /pseudo FT /locus_tag="RP11-341G2.3-001" FT /product="DiGeorge syndrome-related protein pseudogene" FT /note="match: proteins: Sw:O60688 Sw:P61237 Sw:P61237 FT Sw:Q96QA6 Sw:Q9D0U3 Sw:Q9DG42 Sw:Q9ESC7 Sw:Q9U3G6" FT CDS complement(1164423..1164867) FT /pseudo FT /locus_tag="RP11-341G2.1-001" FT /product="ubiquitin pseudogene" FT /note="match: proteins: Sw:P59263 Sw:P59271 Sw:P62978 FT Sw:P62982 Sw:P62988 Sw:P62990 Sw:P68199 Tr:O49906 Tr:O96951 FT Tr:P62979 Tr:P62979 Tr:Q41753 Tr:Q8JJ02 Tr:Q8MV02 Tr:Q8WQK2 FT Tr:Q8WYN9 Tr:Q9ARZ9" FT misc_feature 1249590 FT /note="Clone_left_end: RP11-459D20" FT misc_feature 1251690..1347511 FT /note="annotated region of clone" FT misc_feature 1289145 FT /note="Clone_right_end: RP11-341G2" FT CDS 1328664..1328967 FT /pseudo FT /locus_tag="RP11-459D20.1-001" FT /product="transcription factor IIA small 12 kDa subunit FT (GTF2A2) pseudogene" FT /note="match: proteins: Sw:O08950 Sw:P52656 Sw:P52657 FT Sw:Q90YG6 Sw:Q9IA78 Tr:Q8MYY8" FT misc_feature 1347312 FT /note="Clone_left_end: RP11-560G8" FT misc_feature 1449211 FT /note="Clone_right_end: RP11-459D20" FT misc_feature 1529028 FT /note="Clone_right_end: RP11-560G8" FT misc_feature 1573285 FT /note="Clone_left_end: RP11-438E12" FT misc_feature 1652564 FT /note="Clone_right_end: RP11-415J4" FT misc_feature 1707659 FT /note="Clone_right_end: RP11-10G22" FT misc_feature 1751896 FT /note="Clone_left_end: RP11-420P23" FT misc_feature 1784104 FT /note="Clone_right_end: RP11-438E12" FT misc_feature 1803036..1803193 FT /note="Tandem repeat. Single clone region. Sequence FT confirmed by AC022053" FT misc_feature 1803194 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 750bp by restriction digest data" FT misc_feature 1911824..2009570 FT /note="annotated region of clone" FT misc_feature 1913823 FT /note="Clone_right_end: RP11-420P23" FT CDS complement(1977784..1978547) FT /pseudo FT /locus_tag="RP11-443B9.1-001" FT /product="laminin receptor 1 (67kD, ribosomal protein SA) FT (LAMR1) pseudogene" FT /note="match: proteins: Sw:P08865 Sw:P08865 Sw:P08865 FT Sw:P26452 Sw:P38982 Sw:P38983" FT misc_feature 2007571 FT /note="Clone_left_end: RP11-264I13" FT misc_feature 2009571..2146429 FT /note="annotated region of clone" FT mRNA join(2015374..2015404,2028987..2029247,2032952..2033081, FT 2039466..2039900,2047229..2047484,2054597..2054723, FT 2056672..2056845,2058291..2058464,2060816..2060971) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-008" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: cDNAs: Em:AK020092.1" FT /note="match: ESTs: Em:AL598074.1 Em:BM920706.1 FT Em:BM921013.1 Em:W81725.1" FT mRNA join(2017087..2017207,2028987..2029221) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-006" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: ESTs: Em:BM754875.1" FT mRNA join(2017439..2017502,2028987..2029247,2032952..2033081, FT 2039466..2039574) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-005" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: ESTs: Em:BQ269489.1" FT mRNA join(2021945..2022117,2028987..2029247,2032952..2033081, FT 2039466..2039900,2047229..2047484,2054597..2054723, FT 2056672..2056845,2058291..2058464,2060816..2060986, FT 2070418..2070471,2073212..2073342,2073566..2073623, FT 2076229..2076329,2077629..2077776,2081832..2081995, FT 2083347..2083413,2084086..2084196,2086829..2087071, FT 2088500..2088613,2096657..2096764,2097385..2097471, FT 2101570..2101616,2104003..2104169,2110254..2110417, FT 2115822..2116049,2119458..2119535,2123719..2123937, FT AL138755.13:15357..15574,AL138755.13:24090..24143, FT AL138755.13:35242..35347,AL138755.13:35812..35913, FT AL138755.13:39767..39899,AL138755.13:44937..45079, FT AL138755.13:46375..47295) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-003" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: cDNAs: Em:X72889.1" FT /note="match: ESTs: Em:AA418975.1 Em:AA448583.1 FT Em:AA513727.1 Em:AA903945.1 Em:AA905794.1 Em:AA939111.1 FT Em:AA995543.1 Em:AI097564.1 Em:AI201570.1 Em:AI752055.1 FT Em:AI810154.1 Em:AI860763.1 Em:AI922952.1 Em:AL705116.1 FT Em:AV262234.2 Em:AW008513.1 Em:AW131754.1 Em:AW139527.1 FT Em:AW272459.1 Em:AW343815.1 Em:AW422855.1 Em:BE001877.1 FT Em:BE733909.1 Em:BE893500.1 Em:BF098610.1 Em:BF326819.1 FT Em:BF435093.1 Em:BF435109.1 Em:BF448390.1 Em:BF940719.1 FT Em:BG372198.1 Em:BG540238.1 Em:BG970363.1 Em:BI087495.1 FT Em:BI091177.1 Em:BI100188.1 Em:BI834538.1 Em:BM012452.1 FT Em:BM114944.1 Em:BM230202.1 Em:BM905568.1 Em:BQ308123.1 FT Em:BQ605150.1 Em:BQ963792.1 Em:H46042.1 Em:H46494.1 FT Em:H50014.1 Em:R51966.1 Em:R56503.1 Em:W58590.1" FT mRNA join(2029019..2029247,2032952..2033081,2039466..2039900, FT 2047229..2047484,2054597..2054723,2056672..2056845, FT 2058291..2058464,2060816..2060986,2070418..2070471, FT 2073212..2073342,2073566..2073623,2076229..2076329, FT 2077629..2077776,2081832..2081995,2083347..2083413, FT 2084086..2084196,2086829..2087071,2088500..2088613, FT 2096657..2096764,2097385..2097471,2101570..2101616, FT 2104003..2104169,2110254..2110417,2115822..2116049, FT 2119458..2119535,2123719..2123937,AL138755.13:15357..15574, FT AL138755.13:35242..35347,AL138755.13:35812..35913, FT AL138755.13:39767..39899,AL138755.13:44937..45079, FT AL138755.13:46375..47248) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-004" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: cDNAs: Em:BC022975.1 Em:D26155.1 Em:X91638.1" FT /note="match: ESTs: Em:AI314118.1 Em:BE882115.1 FT Em:BF440045.1 Em:BM716208.1 Em:BQ720773.1 Em:H04155.1" FT CDS 2029023..>2029221 FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-006" FT /standard_name="OTTHUMP00000020973" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /protein_id="CAI12965.1" FT /translation="MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMG FT PSPGPPSVSHPMPTMGSTDFP" FT CDS join(2029023..2029247,2032952..2033081,2039466..>2039574) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-005" FT /standard_name="OTTHUMP00000020972" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /protein_id="CAI12966.1" FT /translation="MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMG FT PSPGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHP FT GMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGA" FT CDS join(2029023..2029247,2032952..2033081,2039466..2039900, FT 2047229..2047484,2054597..2054723,2056672..2056845, FT 2058291..2058464,2060816..2060986,2070418..2070471, FT 2073212..2073342,2073566..2073623,2076229..2076329, FT 2077629..2077776,2081832..2081995,2083347..2083413, FT 2084086..2084196,2086829..2087071,2088500..2088613, FT 2096657..2096764,2097385..2097471,2101570..2101616, FT 2104003..2104169,2110254..2110417,2115822..2116049, FT 2119458..2119535,2123719..2123937,AL138755.13:15357..15574, FT AL138755.13:24090..24143,AL138755.13:35242..35347, FT AL138755.13:35812..35913,AL138755.13:39767..39899, FT AL138755.13:44937..45079,AL138755.13:46375..46410) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-003" FT /standard_name="OTTHUMP00000020970" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: proteins: Sw:P51531" FT /protein_id="CAI12967.1" FT /translation="MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMG FT PSPGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHP FT GMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQA FT MSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQ FT QQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVP FT APGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPV FT EILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVAC FT MRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQH FT AKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKL FT IDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESA FT LGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDS FT EESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYS FT ARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGL FT GKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRR FT SLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY FT VAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEE FT TILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT FT DGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRA FT SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA FT LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ FT NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEE FT ENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWI FT IKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRL FT KKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDRCN FT VEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKY FT RSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEE FT EEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDER FT EQSEGSGTDDE" FT CDS join(2029023..2029247,2032952..2033081,2039466..2039900, FT 2047229..2047484,2054597..2054723,2056672..2056845, FT 2058291..2058464,2060816..2060986,2070418..2070471, FT 2073212..2073342,2073566..2073623,2076229..2076329, FT 2077629..2077776,2081832..2081995,2083347..2083413, FT 2084086..2084196,2086829..2087071,2088500..2088613, FT 2096657..2096764,2097385..2097471,2101570..2101616, FT 2104003..2104169,2110254..2110417,2115822..2116049, FT 2119458..2119535,2123719..2123937,AL138755.13:15357..15574, FT AL138755.13:35242..35347,AL138755.13:35812..35913, FT AL138755.13:39767..39899,AL138755.13:44937..45079, FT AL138755.13:46375..46410) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-004" FT /standard_name="OTTHUMP00000020971" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: proteins: Tr:Q8R1W7 Tr:Q90755" FT /protein_id="CAI12968.1" FT /translation="MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMG FT PSPGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHP FT GMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQA FT MSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQ FT QQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVP FT APGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPV FT EILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVAC FT MRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQH FT AKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKL FT IDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESA FT LGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDS FT EESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYS FT ARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGL FT GKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRR FT SLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY FT VAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEE FT TILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT FT DGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRA FT SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA FT LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ FT NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEE FT ENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWI FT IKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRL FT KKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSG FT RQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQ FT TFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVK FT IKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDEREQSEGSGTDDE" FT CDS join(2029023..2029247,2032952..2033081,2039466..2039900, FT 2047229..2047484,2054597..2054723,2056672..2056845, FT 2058291..2058464,2060816..>2060971) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-008" FT /standard_name="OTTHUMP00000020974" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /protein_id="CAI12969.1" FT /translation="MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMG FT PSPGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHP FT GMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQA FT MSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQ FT QQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVP FT APGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPV FT EILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVAC FT MRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQH FT AKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKL FT IDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKR" FT mRNA join(2032539..2032642,2032952..2033081,2039466..2039857) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-007" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: ESTs: Em:BB572349.1 Em:BB615142.1" FT mRNA complement(join(2041900..2042130,2045835..2046023)) FT /locus_tag="RP11-264I13.2-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BF588495.1" FT misc_feature 2144330 FT /note="Clone_left_end: RP11-48M17" FT misc_feature 2146430..2306367 FT /note="annotated region of clone" FT mRNA join(2157680..2157890,2161686..2161903,2170419..2170472, FT 2181571..2181676,2182141..2182242,2186096..>2186154) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-011" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: ESTs: Em:BI758293.1" FT mRNA join(2158456..2158978,2159814..2159909,2161686..2161903, FT 2181571..2181676,2182141..2182242,2186096..2186228, FT 2191266..2191408,2192704..2193621) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-001" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: cDNAs: Em:AK094076.1" FT mRNA join(2158464..2158594,2159814..2159909,2161686..2161903, FT 2181571..2181676,2182141..>2182183) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-014" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: ESTs: Em:AV733769.1 Em:BB845177.1 FT Em:BE369500.1" FT mRNA join(2158481..2158587,2161001..2161035,2161686..2161903, FT 2170419..2170472,2181571..2181676,2182141..2182242, FT 2186096..2186228,2191266..2191408,2192704..2192752) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-010" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: ESTs: Em:AL558829.1" FT mRNA join(2158485..2158587,2159814..2159909,2161686..2161903, FT 2181571..2181676,2182141..2182242,2186096..2186228, FT 2191266..>2191428) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-012" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: ESTs: Em:AI787698.1 Em:BB854132.1 FT Em:BM545606.1 Em:BM919699.1" FT mRNA join(2158509..2158594,2159814..2159909,2161001..2161035, FT 2161686..2161903,2181571..2181676,2182141..2182242, FT 2186096..2186228,2191266..2191408,2192704..2193571) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-009" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: cDNAs: Em:AK011935.1" FT /note="match: ESTs: Em:AL561053.1" FT mRNA join(2158513..2158594,2161686..2161903,2181571..2181676, FT 2182141..2182242,2186096..2186228,2191266..2191408, FT 2192704..>2193040) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-013" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: ESTs: Em:BM477198.1" FT CDS join(2158976..2158978,2159814..2159909,2161686..2161903, FT 2181571..2181676,2182141..2182242,2186096..2186228, FT 2191266..2191408,2192704..2192739) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-001" FT /standard_name="OTTHUMP00000020968" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: proteins: Tr:Q8N9Q1" FT /protein_id="CAI14592.1" FT /translation="MLMKRLAARCFAGLLILSPLTVISDSRPADSGKAIEDGNLEEMEE FT EVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYK FT DSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC FT HNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKS FT VKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDEREQSEGSGTDDE" FT CDS join(2159817..2159909,2161686..2161903,2181571..2181676, FT 2182141..>2182183) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-014" FT /standard_name="OTTHUMP00000020980" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /protein_id="CAI14593.1" FT /translation="MKRLAARCFAGLLILSPLTVISDSRPADSGKAIEDGNLEEMEEEV FT RLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDS FT SGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDL" FT CDS join(2159817..2159909,2161686..2161903,2181571..2181676, FT 2182141..2182242,2186096..2186228,2191266..>2191428) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-012" FT /standard_name="OTTHUMP00000020978" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /protein_id="CAI14594.1" FT /translation="MKRLAARCFAGLLILSPLTVISDSRPADSGKAIEDGNLEEMEEEV FT RLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDS FT SGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHN FT AQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVK FT VKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDERVSVADW" FT mRNA join(2159945..2159972,2161686..2161903,2181571..2181676, FT 2182141..2182242,2186096..>2186228) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-015" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: ESTs: Em:BG715364.1" FT mRNA join(AL359076.16:14375..14547,AL359076.16:21417..21677, FT AL359076.16:25382..25511,AL359076.16:31896..32330, FT AL359076.16:39659..39914,AL359076.16:47027..47153, FT AL359076.16:49102..49275,AL359076.16:50721..50894, FT AL359076.16:53246..53416,AL359076.16:62848..62901, FT AL359076.16:65642..65772,AL359076.16:65996..66053, FT AL359076.16:68659..68759,AL359076.16:70059..70206, FT AL359076.16:74262..74425,AL359076.16:75777..75843, FT AL359076.16:76516..76626,AL359076.16:79259..79501, FT AL359076.16:80930..81043,AL359076.16:89087..89194, FT AL359076.16:89815..89901,AL359076.16:94000..94046, FT AL359076.16:96433..96599,AL359076.16:102684..102847, FT AL359076.16:108252..108479,AL359076.16:111888..111965, FT AL359076.16:116149..116367,2161686..2161903, FT 2170419..2170472,2181571..2181676,2182141..2182242, FT 2186096..2186228,2191266..2191408,2192704..2193624) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-003" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: cDNAs: Em:X72889.1" FT /note="match: ESTs: Em:AA418975.1 Em:AA448583.1 FT Em:AA513727.1 Em:AA903945.1 Em:AA905794.1 Em:AA939111.1 FT Em:AA995543.1 Em:AI097564.1 Em:AI201570.1 Em:AI752055.1 FT Em:AI810154.1 Em:AI860763.1 Em:AI922952.1 Em:AL705116.1 FT Em:AV262234.2 Em:AW008513.1 Em:AW131754.1 Em:AW139527.1 FT Em:AW272459.1 Em:AW343815.1 Em:AW422855.1 Em:BE001877.1 FT Em:BE733909.1 Em:BE893500.1 Em:BF098610.1 Em:BF326819.1 FT Em:BF435093.1 Em:BF435109.1 Em:BF448390.1 Em:BF940719.1 FT Em:BG372198.1 Em:BG540238.1 Em:BG970363.1 Em:BI087495.1 FT Em:BI091177.1 Em:BI100188.1 Em:BI834538.1 Em:BM012452.1 FT Em:BM114944.1 Em:BM230202.1 Em:BM905568.1 Em:BQ308123.1 FT Em:BQ605150.1 Em:BQ963792.1 Em:H46042.1 Em:H46494.1 FT Em:H50014.1 Em:R51966.1 Em:R56503.1 Em:W58590.1" FT CDS join(2161713..2161903,2170419..2170472,2181571..2181676, FT 2182141..2182242,2186096..>2186154) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-011" FT /standard_name="OTTHUMP00000020977" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /protein_id="CAI14595.1" FT /translation="MEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPP FT KLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYY FT ELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVF FT KSARQKIA" FT CDS join(2161713..2161903,2181571..2181676,2182141..2182242, FT 2186096..>2186228) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-015" FT /standard_name="OTTHUMP00000020981" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /protein_id="CAI14596.1" FT /translation="MEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPP FT KLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN FT HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESN FT EEEEEEDEEESESE" FT CDS join(2161713..2161903,2181571..2181676,2182141..2182242, FT 2186096..2186228,2191266..2191408,2192704..2192739) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-009" FT /standard_name="OTTHUMP00000020975" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /protein_id="CAI14597.1" FT /translation="MEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPP FT KLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN FT HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESN FT EEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQ FT DEREQSEGSGTDDE" FT CDS join(2161713..2161903,2170419..2170472,2181571..2181676, FT 2182141..2182242,2186096..2186228,2191266..2191408, FT 2192704..2192739) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-010" FT /standard_name="OTTHUMP00000020976" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /protein_id="CAI14598.1" FT /translation="MEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPP FT KLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYY FT ELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVF FT KSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRP FT NRGKAKPVVSDFDSDEEQDEREQSEGSGTDDE" FT mRNA join(2161809..2161903,2182141..2182242,2186096..2186228, FT 2191266..2191408,2192704..2193577) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-002" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: cDNAs: Em:BC004653.1" FT mRNA join(AL359076.16:21449..21677,AL359076.16:25382..25511, FT AL359076.16:31896..32330,AL359076.16:39659..39914, FT AL359076.16:47027..47153,AL359076.16:49102..49275, FT AL359076.16:50721..50894,AL359076.16:53246..53416, FT AL359076.16:62848..62901,AL359076.16:65642..65772, FT AL359076.16:65996..66053,AL359076.16:68659..68759, FT AL359076.16:70059..70206,AL359076.16:74262..74425, FT AL359076.16:75777..75843,AL359076.16:76516..76626, FT AL359076.16:79259..79501,AL359076.16:80930..81043, FT AL359076.16:89087..89194,AL359076.16:89815..89901, FT AL359076.16:94000..94046,AL359076.16:96433..96599, FT AL359076.16:102684..102847,AL359076.16:108252..108479, FT AL359076.16:111888..111965,AL359076.16:116149..116367, FT 2161686..2161903,2181571..2181676,2182141..2182242, FT 2186096..2186228,2191266..2191408,2192704..2193577) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-004" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: cDNAs: Em:BC022975.1 Em:D26155.1 Em:X91638.1" FT /note="match: ESTs: Em:AI314118.1 Em:BE882115.1 FT Em:BF440045.1 Em:BM716208.1 Em:BQ720773.1 Em:H04155.1" FT CDS join(AL359076.16:21453..21677,AL359076.16:25382..25511, FT AL359076.16:31896..32330,AL359076.16:39659..39914, FT AL359076.16:47027..47153,AL359076.16:49102..49275, FT AL359076.16:50721..50894,AL359076.16:53246..53416, FT AL359076.16:62848..62901,AL359076.16:65642..65772, FT AL359076.16:65996..66053,AL359076.16:68659..68759, FT AL359076.16:70059..70206,AL359076.16:74262..74425, FT AL359076.16:75777..75843,AL359076.16:76516..76626, FT AL359076.16:79259..79501,AL359076.16:80930..81043, FT AL359076.16:89087..89194,AL359076.16:89815..89901, FT AL359076.16:94000..94046,AL359076.16:96433..96599, FT AL359076.16:102684..102847,AL359076.16:108252..108479, FT AL359076.16:111888..111965,AL359076.16:116149..116367, FT 2161686..2161903,2170419..2170472,2181571..2181676, FT 2182141..2182242,2186096..2186228,2191266..2191408, FT 2192704..2192739) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-003" FT /standard_name="OTTHUMP00000020970" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: proteins: Sw:P51531" FT /protein_id="CAI14599.1" FT /translation="MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMG FT PSPGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHP FT GMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQA FT MSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQ FT QQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVP FT APGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPV FT EILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVAC FT MRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQH FT AKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKL FT IDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESA FT LGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDS FT EESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYS FT ARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGL FT GKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRR FT SLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY FT VAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEE FT TILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT FT DGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRA FT SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA FT LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ FT NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEE FT ENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWI FT IKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRL FT KKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDRCN FT VEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKY FT RSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEE FT EEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDER FT EQSEGSGTDDE" FT CDS join(AL359076.16:21453..21677,AL359076.16:25382..25511, FT AL359076.16:31896..32330,AL359076.16:39659..39914, FT AL359076.16:47027..47153,AL359076.16:49102..49275, FT AL359076.16:50721..50894,AL359076.16:53246..53416, FT AL359076.16:62848..62901,AL359076.16:65642..65772, FT AL359076.16:65996..66053,AL359076.16:68659..68759, FT AL359076.16:70059..70206,AL359076.16:74262..74425, FT AL359076.16:75777..75843,AL359076.16:76516..76626, FT AL359076.16:79259..79501,AL359076.16:80930..81043, FT AL359076.16:89087..89194,AL359076.16:89815..89901, FT AL359076.16:94000..94046,AL359076.16:96433..96599, FT AL359076.16:102684..102847,AL359076.16:108252..108479, FT AL359076.16:111888..111965,AL359076.16:116149..116367, FT 2161686..2161903,2181571..2181676,2182141..2182242, FT 2186096..2186228,2191266..2191408,2192704..2192739) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-004" FT /standard_name="OTTHUMP00000020971" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /note="match: proteins: Tr:Q8R1W7 Tr:Q90755" FT /protein_id="CAI14600.1" FT /translation="MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMG FT PSPGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHP FT GMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQA FT MSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQ FT QQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVP FT APGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPV FT EILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVAC FT MRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQH FT AKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKL FT IDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESA FT LGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDS FT EESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYS FT ARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGL FT GKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRR FT SLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY FT VAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEE FT TILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT FT DGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRA FT SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA FT LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQ FT NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEE FT ENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWI FT IKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRL FT KKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSG FT RQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQ FT TFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVK FT IKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDEREQSEGSGTDDE" FT misc_feature 2169378 FT /note="Clone_right_end: RP11-264I13" FT CDS join(2182195..2182242,2186096..2186228,2191266..2191408, FT 2192704..2192739) FT /gene="SMARCA2" FT /locus_tag="RP11-48M17.1-002" FT /standard_name="OTTHUMP00000020969" FT /product="SWI/SNF related, matrix associated, actin FT dependent regulator of chromatin, subfamily a, member 2" FT /protein_id="CAI14601.1" FT /translation="MLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDES FT NEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEE FT QDEREQSEGSGTDDE" FT polyA_signal 2193598..2193603 FT polyA_site 2193624 FT misc_feature 2276064..2276132 FT /note="Sequence derived from genomic PCR and supported by FT weak pUC subclone" FT misc_feature 2299817 FT /note="Clone_left_end: RP11-125B21" FT misc_feature 2306267 FT /note="Clone_right_end: RP11-48M17" FT misc_feature 2306368..2474633 FT /note="annotated region of clone" FT mRNA complement(join(2422702..2424510,2425393..2425545, FT AL353614.9:18540..18647,AL353614.9:19528..19572, FT AL353614.9:31878..32007,AL353614.9:47370..47513, FT AL353614.9:48520..48624,AL353614.9:51005..51184, FT AL353614.9:61826..61920,AL353614.9:64866..65019, FT AL450467.8:27541..27725)) FT /locus_tag="RP11-125B21.2-001" FT /product="novel transcript" FT /note="match: cDNAs: Em:AK092343.1" FT /note="match: ESTs: Em:BE086096.1 Em:BF104035.1" FT misc_feature 2440025 FT /note="Clone_left_end: RP11-91N2" FT misc_feature 2474533 FT /note="Clone_right_end: RP11-125B21" FT misc_feature 2474634..2593788 FT /note="annotated region of clone" FT mRNA complement(join(AL353667.10:116435..118243, FT AL353667.10:119126..119278,2493073..2493180, FT 2494061..2494105,2506411..2506540,2521903..2522046, FT 2523053..2523157,2525538..2525717,2536359..2536453, FT 2539399..2539552,AL450467.8:27541..27725)) FT /locus_tag="RP11-125B21.2-001" FT /product="novel transcript" FT /note="match: cDNAs: Em:AK092343.1" FT /note="match: ESTs: Em:BE086096.1 Em:BF104035.1" FT mRNA complement(join(2535652..2536015,2536359..2536453, FT 2539399..2539552,AL450467.8:28412..28685)) FT /locus_tag="RP11-125B21.2-002" FT /product="novel transcript" FT /note="match: cDNAs: Em:BC004474.1" FT /note="match: ESTs: Em:BE746797.1" FT mRNA complement(join(2503280..2503403,2506359..2506540, FT 2521903..2522019)) FT /locus_tag="RP11-125B21.2-004" FT /product="novel transcript" FT /note="match: ESTs: Em:AA977434" FT polyA_site complement(2535652) FT polyA_signal complement(2535676..2535681) FT mRNA join(2541097..2541214,2541548..2541635) FT /locus_tag="RP11-91N2.3-001" FT /product="putative novel transcript" FT /note="match: cDNAs: Em:AK000112.1 Em:AK056494.1 FT Em:AK074719.1 Em:AY121802.1 Em:BC008808.1" FT /note="match: ESTs: Em:AA425356.1 Em:AI580746.1 FT Em:AL138378.1 Em:BE695231.1 Em:BE695263.1 Em:BF131462.1 FT Em:BF768680.1 Em:BI538872.1 Em:BQ960048.1" FT mRNA complement(join(2535652..2536015,2536359..2536453, FT 2539399..2539552,2570622..2570754)) FT /locus_tag="RP11-125B21.2-003" FT /product="novel transcript" FT /note="match: ESTs: Em:AI733549.1 Em:AI820825.1 Em:H42295.1 FT Em:H50630.1" FT misc_feature 2593688 FT /note="Clone_right_end: RP11-91N2" FT misc_feature 2593789..2668649 FT /note="annotated region of clone" FT mRNA complement(join(AL353667.10:116435..118243, FT AL353667.10:119126..119278,AL353614.9:18540..18647, FT AL353614.9:19528..19572,AL353614.9:31878..32007, FT AL353614.9:47370..47513,AL353614.9:48520..48624, FT AL353614.9:51005..51184,AL353614.9:61826..61920, FT AL353614.9:64866..65019,2621229..2621413)) FT /locus_tag="RP11-125B21.2-001" FT /product="novel transcript" FT /note="match: ESTs: Em:BE086096.1 Em:BF104035.1" FT /note="match: cDNAs: Em:AK092343.1" FT mRNA join(2621834..2622271,2635453..2635572,2639859..2639981, FT 2641377..2641499,2643160..2643531,2643628..2643750, FT 2643837..2643959,2644734..2644853,2644957..2645082, FT 2645574..2645745,2646334..2646552,2647474..2647592, FT 2648208..2648347,2648669..2648810,2650370..2650516, FT 2651415..2651498,2651874..2651954,2652780..2652949, FT 2653833..2654480) FT /gene="VLDLR" FT /locus_tag="RP11-320E16.1-001" FT /product="very low density lipoprotein receptor" FT /note="match: ESTs: Em:AA441963.1 Em:AA461614.1 FT Em:AU125996.1 Em:AU130860.1 Em:AU132500.1 Em:AU132660.1 FT Em:AU132692.1 Em:BE394969.1 Em:BE733087.1 Em:BE746631.1 FT Em:BG913566.1 Em:BM019791.1" FT /note="match: cDNAs: Em:D11100.1 Em:D16493.1 Em:E05807.1 FT Em:L20470.1 Em:L22431.1 Em:L33417.1 Em:L35767.1 FT Em:S73849.1" FT mRNA join(2621975..2622271,2635453..2635572,2639859..2639981, FT 2643160..>2643355) FT /gene="VLDLR" FT /locus_tag="RP11-320E16.1-005" FT /product="very low density lipoprotein receptor" FT /note="match: ESTs: Em:BE981910.1 Em:BE985363.1" FT mRNA join(2622100..2622271,2635453..2635572,2639859..2639981, FT 2641377..2641499,2643160..2643531,2643628..2643750, FT 2643837..2643959,2644734..2644853,2644957..2645082, FT 2645574..2645745,2646334..2646552,2647474..2647592, FT 2648208..2648347,2648669..2648810,2650370..2650516, FT 2651874..2651954,2652780..2652949,2653833..2654480) FT /gene="VLDLR" FT /locus_tag="RP11-320E16.1-002" FT /product="very low density lipoprotein receptor" FT /note="match: ESTs: Em:BG028841.1 Em:BM558836.1 FT Em:BM807705.1 Em:BM810111.1 Em:BQ229226.1 Em:BQ420445.1" FT /note="match: cDNAs: Em:AF016537.1 Em:BC013622.1 FT Em:D16494.1" FT mRNA complement(join(AL353614.9:61119..61482, FT AL353614.9:61826..61920,AL353614.9:64866..65019, FT 2622100..2622373)) FT /locus_tag="RP11-125B21.2-002" FT /product="novel transcript" FT /note="match: ESTs: Em:BE746797.1" FT /note="match: cDNAs: Em:BC004474.1" FT mRNA join(2622156..2622271,2635453..2635555,2643260..2643531, FT 2643628..2643750,2643837..2643959,2644734..2644853, FT 2644957..2645082,2645574..2645745,2646334..2646552, FT 2647474..2647592,2648208..2648347,2648669..2648810, FT 2650370..2650516,2651415..2651498,2651874..2651954, FT 2652780..2652949,2653833..2654480) FT /gene="VLDLR" FT /locus_tag="RP11-320E16.1-003" FT /product="very low density lipoprotein receptor" FT /note="match: cDNAs: Em:AK092381.1" FT CDS join(2622190..2622271,2635453..2635572,2639859..2639981, FT 2643160..>2643355) FT /gene="VLDLR" FT /locus_tag="RP11-320E16.1-005" FT /standard_name="OTTHUMP00000020985" FT /product="very low density lipoprotein receptor" FT /protein_id="CAH72452.1" FT /translation="MGTSALWALWLLLALCWAPRESGATGTGRKAKCEPSQFQCTNGRC FT ITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWKCDGDPDCEDGSDES FT PEQCRNITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSS FT CIPISWVCDD" FT CDS join(2622190..2622271,2635453..2635572,2639859..2639981, FT 2641377..2641499,2643160..2643531,2643628..2643750, FT 2643837..2643959,2644734..2644853,2644957..2645082, FT 2645574..2645745,2646334..2646552,2647474..2647592, FT 2648208..2648347,2648669..2648810,2650370..2650516, FT 2651415..2651498,2651874..2651954,2652780..2652949, FT 2653833..2653868) FT /gene="VLDLR" FT /locus_tag="RP11-320E16.1-001" FT /standard_name="OTTHUMP00000020982" FT /product="very low density lipoprotein receptor" FT /note="match: proteins: Sw:P35953 Sw:P98155 Sw:P98156 FT Sw:P98165 Sw:P98166 Tr:Q8NAN7" FT /protein_id="CAH72454.1" FT /translation="MGTSALWALWLLLALCWAPRESGATGTGRKAKCEPSQFQCTNGRC FT ITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWKCDGDPDCEDGSDES FT PEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFTCSS FT GRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISWVCDDDADCSDQS FT DESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPD FT QFECEDGSCIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQ FT EQDCRDWSDEPLKECHINECLVNNGGCSHICKDLVIGYECDCAAGFELIDRKTCGDIDE FT CQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLER FT KEYIQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAA FT IAVDWVYKTIYWTDAASKTISVATLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWG FT EPAKIEKAGMNGFDRRPLVTADIQWPNGITLDLIKSRLYWLDSKLHMLSSVDLNGQDRR FT IVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYGANKFTGSELATLVNNLNDAQDIIVY FT HELVQPSGKNWCEEDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNVEENGRDCQSTA FT TTVTYSETKDTNTTEISATSGLVPGGINVTTAVSEVSVPPKGTSAAWAILPLLLLVMAA FT VGGYLMWRNWQHKNMKSMNFDNPVYLKTTEEDLSIDIGRHSASVGHTYPAISVVSTDDD FT LA" FT CDS join(2622190..2622271,2635453..2635572,2639859..2639981, FT 2641377..2641499,2643160..2643531,2643628..2643750, FT 2643837..2643959,2644734..2644853,2644957..2645082, FT 2645574..2645745,2646334..2646552,2647474..2647592, FT 2648208..2648347,2648669..2648810,2650370..2650516, FT 2651874..2651954,2652780..2652949,2653833..2653868) FT /gene="VLDLR" FT /locus_tag="RP11-320E16.1-002" FT /standard_name="OTTHUMP00000020983" FT /product="very low density lipoprotein receptor" FT /note="match: proteins: Tr:O77505 Tr:Q91YY0" FT /protein_id="CAH72455.1" FT /translation="MGTSALWALWLLLALCWAPRESGATGTGRKAKCEPSQFQCTNGRC FT ITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWKCDGDPDCEDGSDES FT PEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFTCSS FT GRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISWVCDDDADCSDQS FT DESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPD FT QFECEDGSCIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQ FT EQDCRDWSDEPLKECHINECLVNNGGCSHICKDLVIGYECDCAAGFELIDRKTCGDIDE FT CQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLER FT KEYIQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAA FT IAVDWVYKTIYWTDAASKTISVATLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWG FT EPAKIEKAGMNGFDRRPLVTADIQWPNGITLDLIKSRLYWLDSKLHMLSSVDLNGQDRR FT IVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYGANKFTGSELATLVNNLNDAQDIIVY FT HELVQPSGKNWCEEDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNVEENGRDCQRIN FT VTTAVSEVSVPPKGTSAAWAILPLLLLVMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKT FT TEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA" FT CDS join(2622190..2622271,2635453..2635555,2643260..2643531, FT 2643628..2643750,2643837..2643959,2644734..2644853, FT 2644957..2645082,2645574..2645745,2646334..2646552, FT 2647474..2647592,2648208..2648347,2648669..2648810, FT 2650370..2650516,2651415..2651498,2651874..2651954, FT 2652780..2652949,2653833..2653868) FT /gene="VLDLR" FT /locus_tag="RP11-320E16.1-003" FT /standard_name="OTTHUMP00000020984" FT /product="very low density lipoprotein receptor" FT /protein_id="CAH72453.1" FT /translation="MGTSALWALWLLLALCWAPRESGATGTGRKAKCEPSQFQCTNGRC FT ITLLWKCDGDEDCVDGSDELDCAPPTCGAHEFQCSTSSCIPISWVCDDDADCSDQSDES FT LEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFE FT CEDGSCIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQEQD FT CRDWSDEPLKECHINECLVNNGGCSHICKDLVIGYECDCAAGFELIDRKTCGDIDECQN FT PGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLERKEY FT IQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAV FT DWVYKTIYWTDAASKTISVATLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPA FT KIEKAGMNGFDRRPLVTADIQWPNGITLDLIKSRLYWLDSKLHMLSSVDLNGQDRRIVL FT KSLEFLAHPLALTIFEDRVYWIDGENEAVYGANKFTGSELATLVNNLNDAQDIIVYHEL FT VQPSGKNWCEEDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNVEENGRDCQSTATTV FT TYSETKDTNTTEISATSGLVPGGINVTTAVSEVSVPPKGTSAAWAILPLLLLVMAAVGG FT YLMWRNWQHKNMKSMNFDNPVYLKTTEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA" FT misc_feature 2622548..2622701 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT mRNA join(2646338..2646552,2647474..2647768) FT /gene="VLDLR" FT /locus_tag="RP11-320E16.1-004" FT /product="very low density lipoprotein receptor" FT /note="match: ESTs: Em:AW863578.1" FT misc_feature 2650493 FT /note="Clone_left_end: RP11-526D20" FT polyA_signal 2654462..2654467 FT polyA_site 2654485 FT misc_feature 2668549 FT /note="Clone_right_end: RP11-320E16" FT misc_feature 2668650..2826582 FT /note="annotated region of clone" FT misc_feature 2677111..2677175 FT /note="Sequence confirmed by AC019222 sequenced by WUGSC" FT mRNA complement(join(2804152..2804463,2807814..2807904, FT 2810344..2810431,2811361..2811583,2812220..2812362, FT 2820018..2820098,2823781..2823834,2824717..2824815, FT AL589675.5:2491..2569,AL589675.5:4093..4196, FT AL589675.5:5192..5366,AL589675.5:6380..6446, FT AL589675.5:6669..6762,AL589675.5:8775..8850, FT AL589675.5:9449..9584,AL589675.5:12598..12819, FT AL589675.5:13844..13935,AL589675.5:19463..19659)) FT /gene="KIAA0020" FT /locus_tag="RP11-526D20.2-001" FT /product="KIAA0020" FT /note="match: cDNAs: Em:AK024584.1 Em:AL832239.1 FT Em:AL832245.1 Em:BC016137.1 Em:BC016186.1 Em:CR607424.1 FT Em:D13645.1" FT /note="match: ESTs: Em:AA907553.1 Em:AI326232.1 FT Em:AI620087.1 Em:AI744355.1 Em:AI953907.1 Em:AU138465.1 FT Em:AV663926.1 Em:AV663927.1 Em:AV744410.1 Em:AW323666.1 FT Em:AW363101.1 Em:BE185499.1 Em:BE439496.1 Em:BF542074.1 FT Em:BF981304.1 Em:BF981804.1 Em:BG285352.1 Em:BI459280.1 FT Em:BM054314.1 Em:BM197453.1 Em:BM387790.1 Em:BM464909.1 FT Em:BM473628.1 Em:BM476257.1 Em:BM537404.1 Em:BM917085.1 FT Em:BM970751.1 Em:BQ278552.1 Em:BQ647059.1 Em:BQ653949.1 FT Em:BQ919996.1 Em:BX336375.2 Em:BX382537.2 Em:BX498270.1 FT Em:CD299880.1 Em:W08137.1" FT CDS complement(join(2804331..2804463,2807814..2807904, FT 2810344..2810431,2811361..2811583,2812220..2812362, FT 2820018..2820098,2823781..2823834,2824717..2824815, FT AL589675.5:2491..2569,AL589675.5:4093..4196, FT AL589675.5:5192..5366,AL589675.5:6380..6446, FT AL589675.5:6669..6762,AL589675.5:8775..8850, FT AL589675.5:9449..9584,AL589675.5:12598..12819, FT AL589675.5:13844..13935,AL589675.5:19463..19560)) FT /gene="KIAA0020" FT /locus_tag="RP11-526D20.2-001" FT /standard_name="OTTHUMP00000020987" FT /product="KIAA0020" FT /note="match: proteins: Sw:Q15397 Sw:Q15397 Sw:Q15397 FT Sw:Q15397 Sw:Q15397" FT /protein_id="CAI15123.2" FT /translation="MKKSGPGAEQGKEAEAERRSGSAARAVSVPRVRVATMEVKGKKQF FT TGKSTKTAQEKNRFHKNSDSGSSKTFPTRKVAKEGGPKVTSRNFEKSITKLGKKGVKQF FT KNKQQGDKSPKNKFQPANKFNKKRKFQPDGRSDESAAKKPKWDDFKKKKKELKQSRQLS FT DKTNYDIVVRAKQMWEILRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCY FT IQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKM FT LRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHRTLDKVLEVQPEKLEL FT IMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEAIREAVVYLAHTHD FT GARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIII FT SEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEVRRRE FT LLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPTMNAIASLAATGLHPG FT GKDGELHIAEHPAGHLVLKWLIEQDKKMKENGREGCFAKTLVEHVGMKNLKSWASVNRG FT AIILSSLLQSCDLEVANKVKAALKSLIPTLEKTKSTSKGIEILLEKLST" FT mRNA join(2717502..2719095,2729446..2730037) FT /gene="KCNV2" FT /locus_tag="RP11-526D20.3-001" FT /product="potassium channel, subfamily V, member 2" FT /note="match: cDNAs: Em:AF348983.1" FT /note="match: ESTs: Em:BI464211.1 Em:BM685388.1 FT Em:BM709887.1 Em:BQ636124.1 Em:BQ637800.1 Em:BQ638061.1 FT Em:BQ638199.1 Em:BQ638863.1 Em:BQ639026.1 Em:BQ639959.1 FT Em:BQ640692.1" FT CDS join(2717740..2719095,2729446..2729727) FT /gene="KCNV2" FT /locus_tag="RP11-526D20.3-001" FT /standard_name="OTTHUMP00000020986" FT /product="potassium channel, subfamily V, member 2" FT /note="match: proteins: Sw:Q8TDN2" FT /protein_id="CAI15124.1" FT /translation="MLKQSERRRSWSYRPWNTTENEGSQHRRSICSLGARSGSQASIHG FT WTEGNYNYYIEEDEDGEEEDQWKDDLAEEDQQAGEVTTAKPEGPSDPPALLSTLNVNVG FT GHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQLVYN FT FYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHELRA FT QAQVEEAEELFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVALALNT FT VEEMQQHSGQGEGGPDLRPILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDL FT VAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRA FT FGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPSTNFTTIPHSWWWAAVSISTV FT GYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTTIRRERGE FT VNFMQRARKKIAECLLGSNPQLTPRQEN" FT polyA_signal 2730017..2730022 FT polyA_site 2730037 FT misc_feature 2761422..2761541 FT /note="Sequence confirmed by AC019222 sequenced by WUGSC" FT misc_feature 2768666..2768675 FT /note="Sequence confirmed by AC019222 sequenced by WUGSC" FT polyA_site complement(2804164) FT polyA_signal complement(2804181..2804186) FT mRNA complement(join(2720469..2720532,2782756..2782807, FT 2804257..2804465)) FT /gene="KIAA0020" FT /locus_tag="RP11-526D20.2-004" FT /product="KIAA0020" FT /note="match: ESTs: Em:BI046550.1" FT mRNA complement(join(2804167..2804463,2807814..2807974)) FT /gene="KIAA0020" FT /locus_tag="RP11-526D20.2-003" FT /product="KIAA0020" FT /note="match: ESTs: Em:AI936509.1" FT misc_feature 2808299 FT /note="Clone_left_end: RP11-255J3" FT misc_feature 2824582 FT /note="Clone_right_end: RP11-526D20" FT misc_feature 2826583..2934365 FT /note="annotated region of clone" FT mRNA complement(join(2828475..2828778,2829774..2829925)) FT /gene="KIAA0020" FT /locus_tag="RP11-526D20.2-002" FT /product="KIAA0020" FT /note="match: ESTs: Em:N90372.1" FT mRNA complement(join(2919099..2919305,2921789..2921874, FT 2923191..2923272,AL359077.10:11200..11289)) FT /gene="CARM1L" FT /locus_tag="RP11-255J3.1-002" FT /product="coactivator associated arginine methyltransferase FT 1-like" FT /note="match: ESTs: Em:BG192993.1 Em:BG220475.1" FT mRNA complement(join(AL354723.17:137503..137814, FT AL354723.17:141165..141255,AL354723.17:143695..143782, FT AL354723.17:144712..144934,AL354723.17:145571..145713, FT AL354723.17:153369..153449,AL354723.17:157132..157185, FT AL354723.17:158068..158166,2827073..2827151, FT 2828675..2828778,2829774..2829948,2830962..2831028, FT 2831251..2831344,2833357..2833432,2834031..2834166, FT 2837180..2837401,2838426..2838517,2844045..2844241)) FT /gene="KIAA0020" FT /locus_tag="RP11-526D20.2-001" FT /product="KIAA0020" FT /note="match: cDNAs: Em:AK024584.1 Em:AL832239.1 FT Em:AL832245.1 Em:BC016137.1 Em:BC016186.1 Em:CR607424.1 FT Em:D13645.1" FT /note="match: ESTs: Em:AA907553.1 Em:AI326232.1 FT Em:AI620087.1 Em:AI744355.1 Em:AI953907.1 Em:AU138465.1 FT Em:AV663926.1 Em:AV663927.1 Em:AV744410.1 Em:AW323666.1 FT Em:AW363101.1 Em:BE185499.1 Em:BE439496.1 Em:BF542074.1 FT Em:BF981304.1 Em:BF981804.1 Em:BG285352.1 Em:BI459280.1 FT Em:BM054314.1 Em:BM197453.1 Em:BM387790.1 Em:BM464909.1 FT Em:BM473628.1 Em:BM476257.1 Em:BM537404.1 Em:BM917085.1 FT Em:BM970751.1 Em:BQ278552.1 Em:BQ647059.1 Em:BQ653949.1 FT Em:BQ919996.1 Em:BX336375.2 Em:BX382537.2 Em:BX498270.1 FT Em:CD299880.1 Em:W08137.1" FT CDS complement(join(AL354723.17:137682..137814, FT AL354723.17:141165..141255,AL354723.17:143695..143782, FT AL354723.17:144712..144934,AL354723.17:145571..145713, FT AL354723.17:153369..153449,AL354723.17:157132..157185, FT AL354723.17:158068..158166,2827073..2827151, FT 2828675..2828778,2829774..2829948,2830962..2831028, FT 2831251..2831344,2833357..2833432,2834031..2834166, FT 2837180..2837401,2838426..2838517,2844045..2844142)) FT /gene="KIAA0020" FT /locus_tag="RP11-526D20.2-001" FT /standard_name="OTTHUMP00000020987" FT /product="KIAA0020" FT /note="match: proteins: Sw:Q15397 Sw:Q15397 Sw:Q15397 FT Sw:Q15397 Sw:Q15397" FT /protein_id="CAI12924.2" FT /translation="MKKSGPGAEQGKEAEAERRSGSAARAVSVPRVRVATMEVKGKKQF FT TGKSTKTAQEKNRFHKNSDSGSSKTFPTRKVAKEGGPKVTSRNFEKSITKLGKKGVKQF FT KNKQQGDKSPKNKFQPANKFNKKRKFQPDGRSDESAAKKPKWDDFKKKKKELKQSRQLS FT DKTNYDIVVRAKQMWEILRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCY FT IQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKM FT LRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHRTLDKVLEVQPEKLEL FT IMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEAIREAVVYLAHTHD FT GARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIII FT SEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEVRRRE FT LLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPTMNAIASLAATGLHPG FT GKDGELHIAEHPAGHLVLKWLIEQDKKMKENGREGCFAKTLVEHVGMKNLKSWASVNRG FT AIILSSLLQSCDLEVANKVKAALKSLIPTLEKTKSTSKGIEILLEKLST" FT misc_feature 2873335..2873354 FT /note="Sequence from uni-directional primer reads only" FT misc_feature 2873887..2873903 FT /note="Sequence from uni-directional primer reads and dGTP FT big dye terminator reads only" FT misc_feature 2873904..2873940 FT /note="Sequence from uni-directional primer reads only" FT misc_feature 2875058..2875243 FT /note="sequence from uni-directional primer reads only" FT CDS complement(2875449..2876427) FT /pseudo FT /locus_tag="RP11-255J3.2-001" FT /product="G protein pathway suppressor 2 (GPS2) pseudogene" FT /note="match: proteins: Sw:Q13227 Sw:Q13227 Tr:Q921N8 FT Tr:Q9WV81" FT misc_feature 2881652..2881720 FT /note="Sequence from uni-directional primer reads only" FT misc_feature 2881721..2881771 FT /note="Sequence from uni-directional primer reads and dGTP FT big dye terminator reads only" FT CDS complement(2899327..2900804) FT /pseudo FT /locus_tag="RP11-255J3.3-001" FT /product="ATP synthase, H+ transporting, mitochondrial F0 FT complex, subunit d (ATP5H) pseudogene" FT /note="match: proteins: Sw:O75947 Sw:O75947 Sw:O75947 FT Sw:P13620 Sw:P31399 Sw:Q9DCX2 Sw:Q9DCX2" FT polyA_site complement(2900249) FT polyA_signal complement(2900266..2900271) FT polyA_signal complement(2919105..2919110) FT misc_feature 2920633..2920692 FT /note="Sequence from uni-directional primer reads only" FT misc_feature 2930366 FT /note="Clone_left_end: RP11-176B4" FT mRNA complement(join(<2907073..2907163,2916701..2916830, FT 2919241..2919305,2921789..2921874,2923191..2923272, FT AL359077.10:11200..11290,AL359077.10:15740..15917, FT AL359077.10:60098..60180,AL359077.10:80543..80663, FT AL359077.10:81706..81812,AL359077.10:120922..>121043)) FT /gene="CARM1L" FT /locus_tag="RP11-255J3.1-001" FT /product="coactivator associated arginine methyltransferase FT 1-like" FT CDS complement(join(<2907073..2907163,2916701..2916830, FT 2919241..2919305,2921789..2921874,2923191..2923272, FT AL359077.10:11200..11290,AL359077.10:15740..15917, FT AL359077.10:60098..60180,AL359077.10:80543..80663, FT AL359077.10:81706..81812,AL359077.10:120922..>121043)) FT /codon_start=2 FT /gene="CARM1L" FT /locus_tag="RP11-255J3.1-001" FT /standard_name="OTTHUMP00000020988" FT /product="coactivator associated arginine methyltransferase FT 1-like" FT /note="match: proteins: Sw:P55345 Sw:Q6NZB1 Sw:Q9NR22 FT Sw:Q9R144 Sw:Q9VH48 Sw:Q9WVG6 Sw:Q9WVG6 Sw:Q9WVG6 Tr:O82210 FT Tr:Q8VZP0 Tr:Q8W552 Tr:Q95VB6 Tr:Q9FI68 Tr:Q9LJZ9 Tr:Q9M906 FT Tr:Q9MAT5 Tr:Q9SU94 Tr:Q9VGW7" FT /protein_id="CAI12927.1" FT /translation="GVCVFKCLLNRDTECCCVWKESILMTLGYSSALLKVESHAEFSAF FT ANTLKICQNKKKEYSAFSQWTEAASVAQYFQFYGCISQQQNMMQDFVRTATYHRAVLQN FT HIDFRDKVMPAADVGCGSGILSFFAVQAGARTVYAVEASSMLVKNNHLSDKIIVLPGKT FT EDVSLPEAVDVIISEPMGYMLFNERMLESYLHSKKWLKSNGMMFPTFSDIHLAPFSDEQ FT LYVEHFSRANFWYQQCFYGVNLSSLQGATVDEYFRQPIVDTFDVRILMAGTVKYTANFM FT DAEEEDLHRWQSGLIHGLAFWFDVAFVGSLLTVWLSTAPAEPLTHWYQVQCLLQTPLFA FT KEGKTLSGKVLFVANRQSYDIQTVALVNQTGFRSENILDLKNPFF" FT misc_feature 2934366..3114871 FT /note="annotated region of clone" FT polyA_site complement(2943507) FT polyA_signal complement(2943523..2943528) FT mRNA complement(join(AL589675.5:94517..94723, FT AL589675.5:97207..97292,AL589675.5:98609..98690, FT 2943565..2943654)) FT /gene="CARM1L" FT /locus_tag="RP11-255J3.1-002" FT /product="coactivator associated arginine methyltransferase FT 1-like" FT /note="match: ESTs: Em:BG192993.1 Em:BG220475.1" FT mRNA complement(join(2943507..2943654,2948105..2948282, FT 2949501..2949553)) FT /gene="CARM1L" FT /locus_tag="RP11-255J3.1-003" FT /product="coactivator associated arginine methyltransferase FT 1-like" FT /note="match: ESTs: Em:AI243693.1" FT misc_feature 2986312 FT /note="Clone_left_end: RP11-546D20" FT mRNA complement(join(AL589675.5:<82491..82581, FT AL589675.5:92119..92248,AL589675.5:94659..94723, FT AL589675.5:97207..97292,AL589675.5:98609..98690, FT 2943565..2943655,2948105..2948282,2992463..2992545, FT 3012908..3013028,3014071..3014177,3053287..>3053408)) FT /gene="CARM1L" FT /locus_tag="RP11-255J3.1-001" FT /product="coactivator associated arginine methyltransferase FT 1-like" FT CDS complement(join(AL589675.5:<82491..82581, FT AL589675.5:92119..92248,AL589675.5:94659..94723, FT AL589675.5:97207..97292,AL589675.5:98609..98690, FT 2943565..2943655,2948105..2948282,2992463..2992545, FT 3012908..3013028,3014071..3014177,3053287..>3053408)) FT /codon_start=2 FT /gene="CARM1L" FT /locus_tag="RP11-255J3.1-001" FT /standard_name="OTTHUMP00000020988" FT /product="coactivator associated arginine methyltransferase FT 1-like" FT /note="match: proteins: Sw:P55345 Sw:Q6NZB1 Sw:Q9NR22 FT Sw:Q9R144 Sw:Q9VH48 Sw:Q9WVG6 Sw:Q9WVG6 Sw:Q9WVG6 Tr:O82210 FT Tr:Q8VZP0 Tr:Q8W552 Tr:Q95VB6 Tr:Q9FI68 Tr:Q9LJZ9 Tr:Q9M906 FT Tr:Q9MAT5 Tr:Q9SU94 Tr:Q9VGW7" FT /protein_id="CAI12445.1" FT /translation="GVCVFKCLLNRDTECCCVWKESILMTLGYSSALLKVESHAEFSAF FT ANTLKICQNKKKEYSAFSQWTEAASVAQYFQFYGCISQQQNMMQDFVRTATYHRAVLQN FT HIDFRDKVMPAADVGCGSGILSFFAVQAGARTVYAVEASSMLVKNNHLSDKIIVLPGKT FT EDVSLPEAVDVIISEPMGYMLFNERMLESYLHSKKWLKSNGMMFPTFSDIHLAPFSDEQ FT LYVEHFSRANFWYQQCFYGVNLSSLQGATVDEYFRQPIVDTFDVRILMAGTVKYTANFM FT DAEEEDLHRWQSGLIHGLAFWFDVAFVGSLLTVWLSTAPAEPLTHWYQVQCLLQTPLFA FT KEGKTLSGKVLFVANRQSYDIQTVALVNQTGFRSENILDLKNPFF" FT misc_feature 3112772 FT /note="Clone_left_end: RP11-32F11" FT misc_feature 3114872..3277008 FT /note="annotated region of clone" FT misc_feature 3140994 FT /note="Clone_right_end: RP11-546D20" FT CDS complement(join(3225042..3225280,3228847..3228889, FT 3248032..3248185,3256991..3257199,3262935..3263084, FT 3266208..3266305,3270371..3270525,3271003..3271118, FT 3275500..3275612,AL354941.10:2332..2453, FT AL354941.10:13123..13242,AL354941.10:18069..18250, FT AL354941.10:26538..26612,AL354941.10:55251..55509, FT AL354941.10:71659..71756,AL365202.19:27441..27557)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-006" FT /standard_name="OTTHUMP00000020994" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: proteins: Sw:P48379 Sw:P48379 Sw:P48380 FT Sw:P48380 Sw:P48381 Tr:Q8SNA2" FT /protein_id="CAI40199.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAI FT ETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNA FT ASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQ FT KQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS FT LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITE FT SSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQA FT IRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTS FT QINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNV FT MMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMF FT YLVEHRVAQATGETPIAVMGEFGDLNAVSPGNLDKDEGSEVESEMDEELDDSSEPQAKR FT EKTELSQAFPVGCMQPVLETGVQPSLLNPIHSEHIVTSTQTIRQCSATGNTYTAV" FT mRNA complement(join(3247037..3248185,3256991..3257199, FT 3262935..3263084,3266208..3266305,3270371..3270525, FT 3271003..3271118,3275500..3275612,AL354941.10:2332..2453, FT AL354941.10:13123..13242,AL354941.10:18069..18250, FT AL354941.10:26538..26612,AL354941.10:55251..55509, FT AL354941.10:71659..71756,AL365202.19:27441..27565)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-005" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:AI811824.1 Em:AI924203.1 FT Em:AL712767.1 Em:AW152407.1 Em:BE295421.1 Em:BF956642.1 FT Em:BG196913.1 Em:BI829112.1 Em:BM543944.1 Em:BM560161.1" FT /note="match: cDNAs: Em:X76092.1" FT CDS complement(join(3247876..3248185,3256991..3257199, FT 3262935..3263084,3266208..3266305,3270371..3270525, FT 3271003..3271118,3275500..3275612,AL354941.10:2332..2453, FT AL354941.10:13123..13242,AL354941.10:18069..18250, FT AL354941.10:26538..26612,AL354941.10:55251..55509, FT AL354941.10:71659..71756,AL365202.19:27441..27557)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-005" FT /standard_name="OTTHUMP00000020993" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: proteins: Sw:P48380" FT /protein_id="CAI40200.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAI FT ETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNA FT ASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQ FT KQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS FT LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITE FT SSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQA FT IRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTS FT QINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNV FT MMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMF FT YLVEHRVAQATGETPIAVMGEVREAERAVTHWVIKNKPELHFSLNTLLIKTMVPNQVSL FT RARRDCGVIARVP" FT mRNA join(3181589..3181889,3186918..3187035,3193460..3193594, FT 3198186..3198517) FT /locus_tag="RP11-32F11.2-001" FT /product="novel transcript" FT /note="match: ESTs: Em:BI756497.1" FT misc_feature 3202276 FT /note="Clone_left_end: RP11-62E14" FT polyA_site complement(3218297) FT polyA_signal complement(3218318..3218323) FT polyA_site complement(3223161) FT polyA_signal complement(3223183..3223188) FT polyA_site complement(3225013) FT polyA_signal complement(3225031..3225036) FT polyA_site complement(3247037) FT polyA_signal complement(3247053..3247058) FT polyA_site complement(3247506) FT polyA_signal complement(3247519..3247524) FT mRNA complement(join(3247514..3247783,3248032..3248185, FT 3256991..>3257199)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-007" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:BG192854.1" FT CDS complement(join(3247772..3247783,3248032..3248185, FT 3256991..>3257199)) FT /codon_start=1 FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-007" FT /standard_name="OTTHUMP00000020995" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI40201.1" FT /translation="EQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQA FT LKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVE FT HRVAQATGETPIAVMGEVPM" FT mRNA complement(join(<3257002..3257199,3262935..3263084, FT 3266208..3266305,3270371..3270738)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-008" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:BQ721202.1" FT CDS complement(join(<3257002..3257199,3262935..3263084, FT 3266208..3266305,3270371..3270446)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-008" FT /standard_name="OTTHUMP00000020996" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI40202.1" FT /translation="MCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSN FT AMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDF FT ANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSF FT PKAARQFLLKW" FT mRNA complement(join(3218297..3225280,3228847..3228889, FT 3248032..3248185,3256991..3257199,3262935..3263084, FT 3266208..3266305,3270371..3270525,3271003..3271118, FT 3275500..3275612,AL354941.10:2332..2453, FT AL354941.10:13123..13242,AL354941.10:18069..18250, FT AL354941.10:26538..26612,AL354941.10:55251..55509, FT AL354941.10:71659..71756,AL365202.19:27441..27565, FT AL365202.19:122248..122314,AL365202.19:157716..157952)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-006" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:AA400681.1 Em:AA732577.1 FT Em:AA759375.1 Em:AI017287.1 Em:AI203838.1 Em:AI306680.1 FT Em:AI393332.1 Em:AI635856.1 Em:AI671064.1 Em:AI955383.1 FT Em:AL133873.1 Em:AV273927.2 Em:AV715356.1 Em:AW009249.1 FT Em:AW022635.1 Em:AW027236.1 Em:AW082678.1 Em:BE178884.1 FT Em:BF111232.1 Em:BM150555.1 Em:BM541063.1 Em:BM666287.1 FT Em:BM711284.1 Em:BM971433.1 Em:BQ573841.1 Em:F08477.1 FT Em:N36861.1 Em:Z38715.1" FT /note="match: cDNAs: Em:BC017598.1 Em:BC022191.1" FT misc_feature 3276908 FT /note="Clone_right_end: RP11-32F11" FT misc_feature 3277009..3368037 FT /note="annotated region of clone" FT misc_feature 3285750 FT /note="Clone_left_end: RP11-16O12" FT CDS complement(join(<3293084..3293258,3330259..3330517, FT 3346667..3346764,AL365202.19:27441..27557)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-003" FT /standard_name="OTTHUMP00000020991" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI41211.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATLQWLL FT DNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFMGLRTRRL" FT CDS complement(join(<3301543..3301620,3330259..3330517, FT 3346667..3346764,AL365202.19:27441..27557)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-002" FT /standard_name="OTTHUMP00000020990" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI41212.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAI FT ETLQKSDGLSTHRSSLLNSHV" FT CDS complement(join(<3330317..3330517,3346667..3346764, FT AL365202.19:27441..27557)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-004" FT /standard_name="OTTHUMP00000020992" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI41213.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIG" FT mRNA complement(join(3344732..3344880,3346667..3346764, FT AL365202.19:27441..27557)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-001" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:AI684912.1" FT CDS complement(join(3344838..3344880,3346667..3346764, FT AL365202.19:27441..27557)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-001" FT /standard_name="OTTHUMP00000020989" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI41214.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAMSRAPWSMILESSP" FT CDS complement(join(AL133549.11:110271..110509, FT AL133549.11:114076..114118,AL133549.11:133261..133414, FT AL133549.11:142220..142428,AL133549.11:148164..148313, FT AL133549.11:151437..151534,AL133549.11:155600..155754, FT AL133549.11:156232..156347,AL133549.11:160729..160841, FT 3277340..3277461,3288131..3288250,3293077..3293258, FT 3301546..3301620,3330259..3330517,3346667..3346764, FT AL365202.19:27441..27557)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-006" FT /standard_name="OTTHUMP00000020994" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: proteins: Sw:P48379 Sw:P48379 Sw:P48380 FT Sw:P48380 Sw:P48381 Tr:Q8SNA2" FT /protein_id="CAI41215.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAI FT ETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNA FT ASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQ FT KQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS FT LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITE FT SSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQA FT IRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTS FT QINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNV FT MMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMF FT YLVEHRVAQATGETPIAVMGEFGDLNAVSPGNLDKDEGSEVESEMDEELDDSSEPQAKR FT EKTELSQAFPVGCMQPVLETGVQPSLLNPIHSEHIVTSTQTIRQCSATGNTYTAV" FT mRNA complement(join(AL133549.11:132266..133414, FT AL133549.11:142220..142428,AL133549.11:148164..148313, FT AL133549.11:151437..151534,AL133549.11:155600..155754, FT AL133549.11:156232..156347,AL133549.11:160729..160841, FT 3277340..3277461,3288131..3288250,3293077..3293258, FT 3301546..3301620,3330259..3330517,3346667..3346764, FT AL365202.19:27441..27565)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-005" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:AI811824.1 Em:AI924203.1 FT Em:AL712767.1 Em:AW152407.1 Em:BE295421.1 Em:BF956642.1 FT Em:BG196913.1 Em:BI829112.1 Em:BM543944.1 Em:BM560161.1" FT /note="match: cDNAs: Em:X76092.1" FT CDS complement(join(AL133549.11:133105..133414, FT AL133549.11:142220..142428,AL133549.11:148164..148313, FT AL133549.11:151437..151534,AL133549.11:155600..155754, FT AL133549.11:156232..156347,AL133549.11:160729..160841, FT 3277340..3277461,3288131..3288250,3293077..3293258, FT 3301546..3301620,3330259..3330517,3346667..3346764, FT AL365202.19:27441..27557)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-005" FT /standard_name="OTTHUMP00000020993" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: proteins: Sw:P48380" FT /protein_id="CAI41216.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAI FT ETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNA FT ASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQ FT KQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS FT LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITE FT SSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQA FT IRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTS FT QINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNV FT MMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMF FT YLVEHRVAQATGETPIAVMGEVREAERAVTHWVIKNKPELHFSLNTLLIKTMVPNQVSL FT RARRDCGVIARVP" FT misc_feature 3323184..3323273 FT /note="Sequence from overlapping clone FT RP11-16O12(AL158161). Assembly confirmed by restriction FT digest" FT polyA_site complement(3323961) FT polyA_signal complement(3323978..3323983) FT polyA_site complement(3344732) FT polyA_signal complement(3344759..3344764) FT mRNA complement(join(3323961..3324095,3330259..3330517, FT 3346667..>3346764)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-010" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:AI004401.1 Em:AI150092.1" FT CDS complement(join(3323982..3324095,3330259..3330517, FT 3346667..>3346764)) FT /codon_start=1 FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-010" FT /standard_name="OTTHUMP00000020998" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI41217.1" FT /translation="VQQVQTVQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQM FT YSQNTGGNYFDTQGSSAQVTTVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMEN FT SGHSVTHTTRASPATANSVPEMKLLRQITMNRLFPTLNHKLTEGSGPHFQSI" FT mRNA complement(join(3323961..3324129,3330259..3330517, FT 3346667..>3346764)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-009" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:AA861129.1" FT CDS complement(join(3324079..3324129,3330259..3330517, FT 3346667..>3346764)) FT /codon_start=1 FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-009" FT /standard_name="OTTHUMP00000020997" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI41218.1" FT /translation="VQQVQTVQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQM FT YSQNTGGNYFDTQGSSAQVTTVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMEN FT SGHSVTHTTRASPATLFLFSCVPFSLGQLSP" FT CDS complement(3364329..3364792) FT /pseudo FT /locus_tag="RP11-62E14.2-001" FT /product="ribosomal protein L7 (RPL7) pseudogene" FT /note="match: proteins: Sw:O01802 Sw:P14148 Sw:P32100 FT Sw:P60039 Sw:P60040 Sw:Q9LHP1 Tr:O95036 Tr:Q9SCF9" FT misc_feature 3366037 FT /note="Clone_right_end: RP11-62E14" FT mRNA complement(join(<3293084..3293258,3330259..3330517, FT 3346667..3346764,AL365202.19:27441..27565, FT AL365202.19:120745..120861,AL365202.19:121338..121385)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-003" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:BG717398.1" FT mRNA complement(join(<3301543..3301620,3330259..3330517, FT 3346667..3346764,AL365202.19:27441..27565, FT AL365202.19:120745..120864,AL365202.19:121338..121397)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-002" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:BI559515.1" FT mRNA complement(join(<3330317..3330517,3346667..3346764, FT AL365202.19:27441..27565,AL365202.19:120745..120864, FT AL365202.19:122248..122314,AL365202.19:157716..157973)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-004" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:BU170404.1" FT mRNA complement(join(AL133549.11:103526..110509, FT AL133549.11:114076..114118,AL133549.11:133261..133414, FT AL133549.11:142220..142428,AL133549.11:148164..148313, FT AL133549.11:151437..151534,AL133549.11:155600..155754, FT AL133549.11:156232..156347,AL133549.11:160729..160841, FT 3277340..3277461,3288131..3288250,3293077..3293258, FT 3301546..3301620,3330259..3330517,3346667..3346764, FT AL365202.19:27441..27565,AL365202.19:122248..122314, FT AL365202.19:157716..157952)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-006" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:AA400681.1 Em:AA732577.1 FT Em:AA759375.1 Em:AI017287.1 Em:AI203838.1 Em:AI306680.1 FT Em:AI393332.1 Em:AI635856.1 Em:AI671064.1 Em:AI955383.1 FT Em:AL133873.1 Em:AV273927.2 Em:AV715356.1 Em:AW009249.1 FT Em:AW022635.1 Em:AW027236.1 Em:AW082678.1 Em:BE178884.1 FT Em:BF111232.1 Em:BM150555.1 Em:BM541063.1 Em:BM666287.1 FT Em:BM711284.1 Em:BM971433.1 Em:BQ573841.1 Em:F08477.1 FT Em:N36861.1 Em:Z38715.1" FT /note="match: cDNAs: Em:BC017598.1 Em:BC022191.1" FT misc_feature 3368038..3370031 FT /note="annotated region of clone" FT misc_feature 3370032..3545195 FT /note="annotated region of clone" FT CDS complement(join(AL354941.10:<18076..18250, FT AL354941.10:55251..55509,AL354941.10:71659..71756, FT 3395472..3395588)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-003" FT /standard_name="OTTHUMP00000020991" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI13399.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATLQWLL FT DNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFMGLRTRRL" FT CDS complement(join(AL354941.10:<26535..26612, FT AL354941.10:55251..55509,AL354941.10:71659..71756, FT 3395472..3395588)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-002" FT /standard_name="OTTHUMP00000020990" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI13400.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAI FT ETLQKSDGLSTHRSSLLNSHV" FT CDS complement(join(AL354941.10:<55309..55509, FT AL354941.10:71659..71756,3395472..3395588)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-004" FT /standard_name="OTTHUMP00000020992" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI13401.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIG" FT mRNA complement(join(AL354941.10:69724..69872, FT AL354941.10:71659..71756,3395472..3395588)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-001" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:AI684912.1" FT CDS complement(join(AL354941.10:69830..69872, FT AL354941.10:71659..71756,3395472..3395588)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-001" FT /standard_name="OTTHUMP00000020989" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /protein_id="CAI13402.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAMSRAPWSMILESSP" FT CDS complement(join(AL133549.11:110271..110509, FT AL133549.11:114076..114118,AL133549.11:133261..133414, FT AL133549.11:142220..142428,AL133549.11:148164..148313, FT AL133549.11:151437..151534,AL133549.11:155600..155754, FT AL133549.11:156232..156347,AL133549.11:160729..160841, FT AL354941.10:2332..2453,AL354941.10:13123..13242, FT AL354941.10:18069..18250,AL354941.10:26538..26612, FT AL354941.10:55251..55509,AL354941.10:71659..71756, FT 3395472..3395588)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-006" FT /standard_name="OTTHUMP00000020994" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: proteins: Sw:P48379 Sw:P48379 Sw:P48380 FT Sw:P48380 Sw:P48381 Tr:Q8SNA2" FT /protein_id="CAI13403.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAI FT ETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNA FT ASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQ FT KQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS FT LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITE FT SSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQA FT IRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTS FT QINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNV FT MMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMF FT YLVEHRVAQATGETPIAVMGEFGDLNAVSPGNLDKDEGSEVESEMDEELDDSSEPQAKR FT EKTELSQAFPVGCMQPVLETGVQPSLLNPIHSEHIVTSTQTIRQCSATGNTYTAV" FT mRNA complement(join(AL133549.11:132266..133414, FT AL133549.11:142220..142428,AL133549.11:148164..148313, FT AL133549.11:151437..151534,AL133549.11:155600..155754, FT AL133549.11:156232..156347,AL133549.11:160729..160841, FT AL354941.10:2332..2453,AL354941.10:13123..13242, FT AL354941.10:18069..18250,AL354941.10:26538..26612, FT AL354941.10:55251..55509,AL354941.10:71659..71756, FT 3395472..3395596)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-005" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: cDNAs: Em:X76092.1" FT /note="match: ESTs: Em:AI811824.1 Em:AI924203.1 FT Em:AL712767.1 Em:AW152407.1 Em:BE295421.1 Em:BF956642.1 FT Em:BG196913.1 Em:BI829112.1 Em:BM543944.1 Em:BM560161.1" FT CDS complement(join(AL133549.11:133105..133414, FT AL133549.11:142220..142428,AL133549.11:148164..148313, FT AL133549.11:151437..151534,AL133549.11:155600..155754, FT AL133549.11:156232..156347,AL133549.11:160729..160841, FT AL354941.10:2332..2453,AL354941.10:13123..13242, FT AL354941.10:18069..18250,AL354941.10:26538..26612, FT AL354941.10:55251..55509,AL354941.10:71659..71756, FT 3395472..3395588)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-005" FT /standard_name="OTTHUMP00000020993" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: proteins: Sw:P48380" FT /protein_id="CAI13404.1" FT /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQT FT VQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVT FT TVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAI FT ETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNA FT ASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQ FT KQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS FT LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITE FT SSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQA FT IRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTS FT QINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNV FT MMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMF FT YLVEHRVAQATGETPIAVMGEVREAERAVTHWVIKNKPELHFSLNTLLIKTMVPNQVSL FT RARRDCGVIARVP" FT misc_feature 3408208..3408226 FT /note="Sequence from overlapping clone RP11-350P8 FT (AL603631). Assembly confirmed by restriction digest" FT misc_feature 3425850 FT /note="Clone_right_end: RP11-350P8" FT mRNA complement(join(AL354941.10:<18076..18250, FT AL354941.10:55251..55509,AL354941.10:71659..71756, FT 3395472..3395596,3488776..3488892,3489369..3489416)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-003" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:BG717398.1" FT mRNA complement(join(AL354941.10:<26535..26612, FT AL354941.10:55251..55509,AL354941.10:71659..71756, FT 3395472..3395596,3488776..3488895,3489369..3489428)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-002" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:BI559515.1" FT misc_feature 3502565..3502678 FT /note="Single clone region. Sequence from uni-directional FT dGTP big dye terminator reads only. Assembly consistent FT with restriction digest data" FT misc_feature 3502679 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 220bp by restriction digest data" FT misc_feature 3502679..3503166 FT /note="Single clone region. Assembly consistent with FT restriction digest data" FT misc_feature 3503326..3503366 FT /note="Single clone region. Assembly consistent with FT restriction digest data" FT mRNA complement(join(AL354941.10:<55309..55509, FT AL354941.10:71659..71756,3395472..3395596,3488776..3488895, FT 3490279..3490345,3525747..3526004)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-004" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: ESTs: Em:BU170404.1" FT mRNA complement(join(AL133549.11:103526..110509, FT AL133549.11:114076..114118,AL133549.11:133261..133414, FT AL133549.11:142220..142428,AL133549.11:148164..148313, FT AL133549.11:151437..151534,AL133549.11:155600..155754, FT AL133549.11:156232..156347,AL133549.11:160729..160841, FT AL354941.10:2332..2453,AL354941.10:13123..13242, FT AL354941.10:18069..18250,AL354941.10:26538..26612, FT AL354941.10:55251..55509,AL354941.10:71659..71756, FT 3395472..3395596,3490279..3490345,3525747..3525983)) FT /gene="RFX3" FT /locus_tag="RP11-32F11.3-006" FT /product="regulatory factor X, 3 (influences HLA class II FT expression)" FT /note="match: cDNAs: Em:BC017598.1 Em:BC022191.1" FT /note="match: ESTs: Em:AA400681.1 Em:AA732577.1 FT Em:AA759375.1 Em:AI017287.1 Em:AI203838.1 Em:AI306680.1 FT Em:AI393332.1 Em:AI635856.1 Em:AI671064.1 Em:AI955383.1 FT Em:AL133873.1 Em:AV273927.2 Em:AV715356.1 Em:AW009249.1 FT Em:AW022635.1 Em:AW027236.1 Em:AW082678.1 Em:BE178884.1 FT Em:BF111232.1 Em:BM150555.1 Em:BM541063.1 Em:BM666287.1 FT Em:BM711284.1 Em:BM971433.1 Em:BQ573841.1 Em:F08477.1 FT Em:N36861.1 Em:Z38715.1" FT mRNA join(3526723..3526777,AL354977.10:3583..3717, FT AL354977.10:25599..25695,AL354977.10:59340..59389, FT AL354977.10:63498..63543,AL354977.10:128282..128429) FT /locus_tag="RP11-509J21.1-001" FT /product="novel transcript" FT /note="match: ESTs: Em:BG720696.1" FT misc_feature 3541196 FT /note="Clone_left_end: RP11-509J21" FT misc_feature 3545196..3706642 FT /note="annotated region of clone" FT misc_feature 3573389 FT /note="Clone_right_end: RP11-326A8" FT mRNA join(3647335..3647477,3647754..3648338) FT /locus_tag="RP11-509J21.2-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BG210915.1" FT misc_feature 3655502 FT /note="Clone_left_end: RP11-661K19" FT mRNA join(3668086..3668408,3671474..3671646) FT /locus_tag="RP11-509J21.1-002" FT /product="novel transcript" FT /note="match: ESTs: Em:AA405344.1 Em:AA765553.1" FT mRNA join(3674546..3674648,3690837..3690959,3691504..3691814) FT /locus_tag="RP11-509J21.3-001" FT /product="novel transcript" FT /note="match: ESTs: Em:AA814772.1 Em:AW977824.1 Em:H56575.1 FT Em:H68203.1" FT mRNA complement(join(3684076..3684459,3689335..3689626)) FT /locus_tag="RP11-509J21.4-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AV752846.1" FT mRNA join(AL365202.19:158692..158746,3546778..3546912, FT 3568794..3568890,3602535..3602584,3606693..3606738, FT 3671477..3671624) FT /locus_tag="RP11-509J21.1-001" FT /product="novel transcript" FT /note="match: ESTs: Em:BG720696.1" FT misc_feature 3704642 FT /note="Clone_right_end: RP11-509J21" FT misc_feature 3726966..3727044 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 3761827 FT /note="Clone_left_end: RP11-252M18" FT misc_feature 3765827..3935816 FT /note="annotated region of clone" FT mRNA complement(join(3932360..3932470,3932795..3932918, FT AL158012.14:1312..1473,AL359095.17:23038..23171)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-007" FT /product="GLIS family zinc finger 3" FT /note="match: ESTs: Em:BX493219.1" FT mRNA join(complement(AL162419.34:54214..54828), FT AL133283.9:128327..128394,complement(3824127..3825850)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-004" FT /product="GLIS family zinc finger 3" FT /note="match: cDNAs: Em:AK075059.1" FT /note="match: ESTs: Em:BF364735.1 Em:BG035705.1" FT polyA_site complement(3824128) FT polyA_signal complement(3824143..3824148) FT polyA_signal complement(3824176..3824181) FT polyA_site complement(3824470) FT polyA_signal complement(3824490..3824495) FT misc_feature 3826725 FT /note="Clone_right_end: RP11-661K19" FT mRNA join(AL133283.9:95025..95141,AL133283.9:121267..121474, FT AL133283.9:128327..129440, FT complement(AL158012.14:1312..1473), FT complement(3932360..3932470),complement(3898691..3898835), FT complement(3879427..3879595),complement(3856009..3856184), FT complement(3829310..3829492),complement(3824127..3828408)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-003" FT /product="GLIS family zinc finger 3" FT /note="match: cDNAs: Em:AB065086.1 Em:AK055907.1 FT Em:AK096318.1 Em:BC033899.2" FT /note="match: ESTs: Em:AA180138.1 Em:AA933816.1 FT Em:AI051255.1 Em:AI277316.1 Em:AI360827.1 Em:AI419242.1 FT Em:AI589077.1 Em:AI678225.1 Em:AL120611.1 Em:AW292503.1 FT Em:BB645405.1 Em:BB666345.1 Em:BE006189.1 Em:BE006190.1 FT Em:BF195378.1 Em:BG169032.1 Em:BG747839.1 Em:BG925732.1 FT Em:BM729335.1 Em:BM968967.1 Em:BM979306.1 Em:BQ019013.1 FT Em:BX492880.1 Em:R93059.1" FT misc_feature 3874694 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 350bp by restriction digest data and spanning FT pUC clones" FT mRNA join(3875584..3875618,3878602..3878809) FT /locus_tag="RP11-252M18.3-001" FT /product="novel transcript" FT /note="match: ESTs: Em:DR731427.1" FT mRNA complement(join(3828345..3828408,3829310..3829492, FT 3856009..3856184,3879427..3879595,3880969..3881023)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-006" FT /product="GLIS family zinc finger 3" FT /note="match: ESTs: Em:BB645405.1" FT CDS join(AL133283.9:121344..121474,AL133283.9:128327..129440, FT complement(AL158012.14:1312..1473), FT complement(3932360..3932470),complement(3898691..3898835), FT complement(3879427..3879595),complement(3856009..3856184), FT complement(3829310..3829492),complement(3828272..3828408)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-003" FT /standard_name="OTTHUMP00000020999" FT /product="GLIS family zinc finger 3" FT /note="match: proteins: Sw:Q8NEA6" FT /protein_id="CAI39818.1" FT /translation="MMVQRLGLISPPASQVSTACNQISPSLQRAMNAANLNIPPSDTRS FT LISRESLASTTLSLTESQSASSMKQEWSQGYRALPSLSNHGSQNGLDLGDLLSLPPGTS FT MSSNSVSNSLPSYLFGTESSHSPYPSPRHSSTRSHSARSKKRALSLSPLSDGIGIDFNT FT IIRTSPTSLVAYINGSRASPANLSPQPEVYGHFLGVRGSCIPQPRPVPGSQKGVLVAPG FT GLALPAYGEDGALEHERMQQLEHGGLQPGLVNHMVVQHGLPGPDSQSAGLFKTERLEEF FT PGSTVDLPPAPPLPPLPPPPGPPPPYHAHAHLHHPELGPHAQQLALPQATLDDDGEMDG FT IGGKHCCRWIDCSALYDQQEELVRHIEKVHIDQRKGEDFTCFWAGCPRRYKPFNARYKL FT LIHMRVHSGEKPNKCTFEGCEKAFSRLENLKIHLRSHTGEKPYLCQHPGCQKAFSNSSD FT RAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHSSKEQQARKKLRSSTELHPDL FT LTDCLTVQSLQPATSPRDAAAEGTVGRSPGPGPDLYSAPIFSSNYSSRSGTAAGAVPPP FT HPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAGAERFAPSAPSPHHISPRRVPAPSSILQ FT RTQPPYTQQPSGSHLKSYQPETNSSFQPNGIHVHGFYGQLQKFCPPHYPDSQRIVPPVS FT SCSVVPSFEDCLVPTSMGQASFDVFHRAFSTHSGITVYDLPSSSSSLFGESLRSGAEDA FT TFLQISTVDRCPSQLSSVYTEG" FT mRNA join(3898642..3898959,3900833..3901248) FT /gene="C9orf70" FT /locus_tag="RP11-252M18.2-001" FT /product="chromosome 9 open reading frame 70" FT /note="match: cDNAs: Em:BC007366.1" FT polyA_signal 3901226..3901231 FT polyA_site 3901248 FT misc_feature 3902206 FT /note="Clone_left_end: RP11-157A10" FT mRNA complement(join(3855437..3856184,3879427..3879595, FT 3898691..3898835,3904910..3904923)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-005" FT /product="GLIS family zinc finger 3" FT /note="match: ESTs: Em:AI763313.1 Em:BG831167.1 FT Em:BM050082.1 Em:BQ961708.1 Em:CD368026.1" FT misc_feature 3933816 FT /note="Clone_right_end: RP11-252M18" FT misc_feature 3935817..4060190 FT /note="annotated region of clone" FT mRNA complement(join(AL137071.22:168534..168644, FT AL137071.22:168969..169092,3937028..3937189, FT AL359095.17:23038..23171)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-007" FT /product="GLIS family zinc finger 3" FT /note="match: ESTs: Em:BX493219.1" FT misc_feature 4003205 FT /note="Clone_left_end: RP11-70J12" FT mRNA join(AL133283.9:95025..95141,AL133283.9:121267..121474, FT AL133283.9:128327..129440,complement(3937028..3937189), FT complement(AL137071.22:168534..168644), FT complement(AL137071.22:134865..135009), FT complement(AL137071.22:115601..115769), FT complement(AL137071.22:92183..92358), FT complement(AL137071.22:65484..65666), FT complement(AL137071.22:60301..64582)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-003" FT /product="GLIS family zinc finger 3" FT /note="match: cDNAs: Em:AB065086.1 Em:AK055907.1 FT Em:AK096318.1 Em:BC033899.2" FT /note="match: ESTs: Em:AA180138.1 Em:AA933816.1 FT Em:AI051255.1 Em:AI277316.1 Em:AI360827.1 Em:AI419242.1 FT Em:AI589077.1 Em:AI678225.1 Em:AL120611.1 Em:AW292503.1 FT Em:BB645405.1 Em:BB666345.1 Em:BE006189.1 Em:BE006190.1 FT Em:BF195378.1 Em:BG169032.1 Em:BG747839.1 Em:BG925732.1 FT Em:BM729335.1 Em:BM968967.1 Em:BM979306.1 Em:BQ019013.1 FT Em:BX492880.1 Em:R93059.1" FT CDS join(AL133283.9:121344..121474,AL133283.9:128327..129440, FT complement(3937028..3937189), FT complement(AL137071.22:168534..168644), FT complement(AL137071.22:134865..135009), FT complement(AL137071.22:115601..115769), FT complement(AL137071.22:92183..92358), FT complement(AL137071.22:65484..65666), FT complement(AL137071.22:64446..64582)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-003" FT /standard_name="OTTHUMP00000020999" FT /product="GLIS family zinc finger 3" FT /note="match: proteins: Sw:Q8NEA6" FT /protein_id="CAH70655.1" FT /translation="MMVQRLGLISPPASQVSTACNQISPSLQRAMNAANLNIPPSDTRS FT LISRESLASTTLSLTESQSASSMKQEWSQGYRALPSLSNHGSQNGLDLGDLLSLPPGTS FT MSSNSVSNSLPSYLFGTESSHSPYPSPRHSSTRSHSARSKKRALSLSPLSDGIGIDFNT FT IIRTSPTSLVAYINGSRASPANLSPQPEVYGHFLGVRGSCIPQPRPVPGSQKGVLVAPG FT GLALPAYGEDGALEHERMQQLEHGGLQPGLVNHMVVQHGLPGPDSQSAGLFKTERLEEF FT PGSTVDLPPAPPLPPLPPPPGPPPPYHAHAHLHHPELGPHAQQLALPQATLDDDGEMDG FT IGGKHCCRWIDCSALYDQQEELVRHIEKVHIDQRKGEDFTCFWAGCPRRYKPFNARYKL FT LIHMRVHSGEKPNKCTFEGCEKAFSRLENLKIHLRSHTGEKPYLCQHPGCQKAFSNSSD FT RAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHSSKEQQARKKLRSSTELHPDL FT LTDCLTVQSLQPATSPRDAAAEGTVGRSPGPGPDLYSAPIFSSNYSSRSGTAAGAVPPP FT HPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAGAERFAPSAPSPHHISPRRVPAPSSILQ FT RTQPPYTQQPSGSHLKSYQPETNSSFQPNGIHVHGFYGQLQKFCPPHYPDSQRIVPPVS FT SCSVVPSFEDCLVPTSMGQASFDVFHRAFSTHSGITVYDLPSSSSSLFGESLRSGAEDA FT TFLQISTVDRCPSQLSSVYTEG" FT misc_feature 4060090 FT /note="Clone_right_end: RP11-157A10" FT misc_feature 4060191..4090605 FT /note="annotated region of clone" FT mRNA complement(join(4070906..4071381,4071726..4071884)) FT /locus_tag="RP11-70J12.1-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BQ429837.1" FT mRNA complement(join(AL137071.22:168534..168644, FT AL137071.22:168969..169092,AL158012.14:1312..1473, FT 4081228..4081361)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-007" FT /product="GLIS family zinc finger 3" FT /note="match: ESTs: Em:BX493219.1" FT misc_feature 4086606 FT /note="Clone_left_end: RP11-31M2" FT misc_feature complement(4090606..4247207) FT /note="annotated region of clone" FT mRNA complement(join(AL137071.22:60301..62024,4118814..4118881, FT AL162419.34:54214..54828)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-004" FT /product="GLIS family zinc finger 3" FT /note="match: cDNAs: Em:AK075059.1" FT /note="match: ESTs: Em:BF364735.1 Em:BG035705.1" FT mRNA complement(join(4118530..4118881,AL162419.34:54214..54629)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-001" FT /product="GLIS family zinc finger 3" FT /note="match: ESTs: Em:BF364735.1 Em:BG035705.1" FT mRNA complement(join(4125812..4125941,4159401..4159478)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-002" FT /product="GLIS family zinc finger 3" FT /note="match: ESTs: Em:AA022897.1 Em:AA022898.1" FT mRNA complement(join(AL137071.22:60301..64582, FT AL137071.22:65484..65666,AL137071.22:92183..92358, FT AL137071.22:115601..115769,AL137071.22:134865..135009, FT AL137071.22:168534..168644,AL158012.14:1312..1473, FT 4117768..4118881,4125734..4125941,4152067..4152183)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-003" FT /product="GLIS family zinc finger 3" FT /note="match: cDNAs: Em:AB065086.1 Em:AK055907.1 FT Em:AK096318.1 Em:BC033899.2" FT /note="match: ESTs: Em:AA180138.1 Em:AA933816.1 FT Em:AI051255.1 Em:AI277316.1 Em:AI360827.1 Em:AI419242.1 FT Em:AI589077.1 Em:AI678225.1 Em:AL120611.1 Em:AW292503.1 FT Em:BB645405.1 Em:BB666345.1 Em:BE006189.1 Em:BE006190.1 FT Em:BF195378.1 Em:BG169032.1 Em:BG747839.1 Em:BG925732.1 FT Em:BM729335.1 Em:BM968967.1 Em:BM979306.1 Em:BQ019013.1 FT Em:BX492880.1 Em:R93059.1" FT CDS complement(join(AL137071.22:64446..64582, FT AL137071.22:65484..65666,AL137071.22:92183..92358, FT AL137071.22:115601..115769,AL137071.22:134865..135009, FT AL137071.22:168534..168644,AL158012.14:1312..1473, FT 4117768..4118881,4125734..4125864)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-003" FT /standard_name="OTTHUMP00000020999" FT /product="GLIS family zinc finger 3" FT /note="match: proteins: Sw:Q8NEA6" FT /protein_id="CAH72449.1" FT /translation="MMVQRLGLISPPASQVSTACNQISPSLQRAMNAANLNIPPSDTRS FT LISRESLASTTLSLTESQSASSMKQEWSQGYRALPSLSNHGSQNGLDLGDLLSLPPGTS FT MSSNSVSNSLPSYLFGTESSHSPYPSPRHSSTRSHSARSKKRALSLSPLSDGIGIDFNT FT IIRTSPTSLVAYINGSRASPANLSPQPEVYGHFLGVRGSCIPQPRPVPGSQKGVLVAPG FT GLALPAYGEDGALEHERMQQLEHGGLQPGLVNHMVVQHGLPGPDSQSAGLFKTERLEEF FT PGSTVDLPPAPPLPPLPPPPGPPPPYHAHAHLHHPELGPHAQQLALPQATLDDDGEMDG FT IGGKHCCRWIDCSALYDQQEELVRHIEKVHIDQRKGEDFTCFWAGCPRRYKPFNARYKL FT LIHMRVHSGEKPNKCTFEGCEKAFSRLENLKIHLRSHTGEKPYLCQHPGCQKAFSNSSD FT RAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHSSKEQQARKKLRSSTELHPDL FT LTDCLTVQSLQPATSPRDAAAEGTVGRSPGPGPDLYSAPIFSSNYSSRSGTAAGAVPPP FT HPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAGAERFAPSAPSPHHISPRRVPAPSSILQ FT RTQPPYTQQPSGSHLKSYQPETNSSFQPNGIHVHGFYGQLQKFCPPHYPDSQRIVPPVS FT SCSVVPSFEDCLVPTSMGQASFDVFHRAFSTHSGITVYDLPSSSSSLFGESLRSGAEDA FT TFLQISTVDRCPSQLSSVYTEG" FT misc_feature complement(4090606) FT /note="Clone_left_end: RP11-31M2" FT misc_feature 4247208..4419742 FT /note="annotated region of clone" FT misc_feature 4274396..4274438 FT /note="Sequence from uni-directional dGTP big dye FT terminator reads only" FT mRNA join(4299390..4299423,4305208..4306046) FT /locus_tag="RP11-358M14.2-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BM903564.1" FT mRNA join(complement(4299421..4300035), FT AL133283.9:128327..128394, FT complement(AL137071.22:60301..62024)) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-004" FT /product="GLIS family zinc finger 3" FT /note="match: cDNAs: Em:AK075059.1" FT /note="match: ESTs: Em:BF364735.1 Em:BG035705.1" FT mRNA join(complement(4299421..4299836), FT AL133283.9:128327..128678) FT /gene="GLIS3" FT /locus_tag="RP11-252M18.1-001" FT /product="GLIS family zinc finger 3" FT /note="match: ESTs: Em:BF364735.1 Em:BG035705.1" FT misc_feature 4337817..4337840 FT /note="Sequence from uni-directional dGTP big dye FT terminator reads only" FT misc_feature 4337841 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 430bp by restriction digest data and spanning FT pUC clone" FT misc_feature 4337841..4337854 FT /note="Single clone region. Sequence generated from a FT transposon library derived from a single pUC clone. FT Assembly consistent with restriction digest data" FT misc_feature 4337855..4337863 FT /note="Single clone region. Sequence from uni-directional FT dGTP big dye terminator reads only. Sequence generated from FT a transposon library derived from a single pUC clone. FT Assembly consistent with restriction digest data" FT misc_feature 4415743 FT /note="Clone_left_end: RP11-280I16" FT misc_feature 4419743..4561170 FT /note="annotated region of clone" FT misc_feature 4434424 FT /note="Clone_right_end: RP11-358M14" FT mRNA join(4490444..4490770,4544567..4544707, FT AL136231.12:379..471,AL136231.12:3274..3388, FT AL136231.12:4977..5019,AL136231.12:6599..6697, FT AL136231.12:11134..11318,AL136231.12:12837..12944, FT AL136231.12:14931..15053,AL136231.12:15499..15693, FT AL136231.12:21968..22102,AL136231.12:24242..26399) FT /gene="SLC1A1" FT /locus_tag="RP11-6J24.1-001" FT /product="solute carrier family 1 (neuronal/epithelial high FT affinity glutamate transporter, system Xag), member 1" FT /note="match: cDNAs: Em:AB008536.1 Em:AF037982.1 FT Em:AF087578.1 Em:AF167075.2 Em:BC033040.1 Em:D43797.1 FT Em:L12411.1 Em:U03506.1 Em:U06469.1 Em:U08989.1 Em:U21104.1 FT Em:U39555.1 Em:U72534.1 Em:U73521.1 Em:U75214.1 FT Em:X94255.1" FT /note="match: ESTs: Em:AA191519.1 Em:AA243675.1 FT Em:AI220413.1 Em:AI435840.1 Em:AW045137.1 Em:AW235061.1 FT Em:AW318693.1 Em:AW951837.1 Em:AW953242.1 Em:AW963090.1 FT Em:BB597905.2 Em:BB745290.1 Em:BE868406.1 Em:BF351104.1 FT Em:BF788225.1 Em:BI157088.1 Em:BI158036.1 Em:BI546834.1 FT Em:BI598670.1 Em:BI762313.1 Em:BI964034.1 Em:BM674141.1 FT Em:BM715801.1 Em:BM717364.1 Em:BM922053.1 Em:BQ008494.1 FT Em:BQ029108.1" FT CDS join(4490680..4490770,4544567..4544707, FT AL136231.12:379..471,AL136231.12:3274..3388, FT AL136231.12:4977..5019,AL136231.12:6599..6697, FT AL136231.12:11134..11318,AL136231.12:12837..12944, FT AL136231.12:14931..15053,AL136231.12:15499..15693, FT AL136231.12:21968..22102,AL136231.12:24242..24488) FT /gene="SLC1A1" FT /locus_tag="RP11-6J24.1-001" FT /standard_name="OTTHUMP00000021006" FT /product="solute carrier family 1 (neuronal/epithelial high FT affinity glutamate transporter, system Xag), member 1" FT /note="match: proteins: Sw:P24942 Sw:P31597 Sw:P43005 FT Sw:P43005 Sw:P46411 Sw:P51906 Sw:P51907 Sw:Q95135 Tr:Q8VI14 FT Tr:Q9D393 Tr:Q9N1R4 Tr:Q9QWI2" FT /protein_id="CAH71965.1" FT /translation="MGKPARKGCEWKRFLKNNWVLLSTVAAVVLGITTGVLVREHSNLS FT TLEKFYFAFPGEILMRMLKLIILPLIISSMITGVAALDSNVSGKIGLRAVVYYFCTTLI FT AVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAMLDLIRNMFPENLVQACFQQYK FT TKREEVKPPSDPEMNMTEESFTAVMTTAISKNKTKEYKIVGMYSDGINVLGLIVFCLVF FT GLVIGKMGEKGQILVDFFNALSDATMKIVQIIMCYMPLGILFLIAGKIIEVEDWEIFRK FT LGLYMATVLTGLAIHSIVILPLIYFIVVRKNPFRFAMGMAQALLTALMISSSSATLPVT FT FRCAEENNQVDKRITRFVLPVGATINMDGTALYEAVAAVFIAQLNDLDLGIGQIITISI FT TATSASIGAAGVPQAGLVTMVIVLSAVGLPAEDVTLIIAVDWLLDRFRTMVNVLGDAFG FT TGIVEKLSKKELEQMDVSSEVNIVNPFALESTILDNEDSDTKKSYVNGGFAVDKSDTIS FT FTQTSQF" FT mRNA complement(join(4553386..4554388,AL136231.12:39583..39739, FT AL136231.12:43109..43199,AL136231.12:44277..44370, FT AL136231.12:61338..61440,AL136231.12:64147..64496, FT AL136231.12:65356..65485,AL136231.12:68021..68098, FT AL136231.12:74205..74329,AL136231.12:94971..95019, FT AL136231.12:100829..100966,AL136231.12:105142..105186, FT AL136231.12:105365..105438)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-001" FT /product="chromosome 9 open reading frame 68" FT /note="match: cDNAs: Em:AK000920.1" FT /note="match: ESTs: Em:AU117437.1" FT misc_feature 4559071 FT /note="Clone_left_end: RP11-6J24" FT mRNA join(4559805..4560080,AL136231.12:379..471, FT AL136231.12:3274..3388) FT /gene="SLC1A1" FT /locus_tag="RP11-6J24.1-003" FT /product="solute carrier family 1 (neuronal/epithelial high FT affinity glutamate transporter, system Xag), member 1" FT /note="match: ESTs: Em:AA278256.1" FT misc_feature 4561171..4721082 FT /note="annotated region of clone" FT CDS complement(join(4712976..4713096,4718419..4718537, FT 4719135..4719307,AL353151.26:3424..3484)) FT /gene="AK3" FT /locus_tag="RP11-6J24.4-001" FT /standard_name="OTTHUMP00000021015" FT /product="adenylate kinase 3" FT /protein_id="CAI41260.1" FT /translation="MTRLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLN FT VPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLK FT AYEDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQTKVPQRSQKASVTP" FT mRNA join(<4572335..4572388,4573907..4574014,4576001..4576123, FT 4576569..4576763,4585312..>4585557) FT /gene="SLC1A1" FT /locus_tag="RP11-6J24.1-002" FT /product="solute carrier family 1 (neuronal/epithelial high FT affinity glutamate transporter, system Xag), member 1" FT /note="match: ESTs: Em:AU133146.1" FT CDS join(<4572335..4572388,4573907..4574014,4576001..4576123, FT 4576569..4576763,4585312..>4585557) FT /codon_start=2 FT /gene="SLC1A1" FT /locus_tag="RP11-6J24.1-002" FT /standard_name="OTTHUMP00000021007" FT /product="solute carrier family 1 (neuronal/epithelial high FT affinity glutamate transporter, system Xag), member 1" FT /protein_id="CAI41261.1" FT /translation="FFNALSDATMKIVQIIMCYMPLGILFLIAGKIIEVEDWEIFRKLG FT LYMATVLTGLAIHSIVILPLIYFIVVRKNPFRFAMGMAQALLTALMISSSSATLPVTFR FT CAEENNQVDKRITRFVLPVGATINMDGTALYEAVAAVFIAQLNDLDLGIGQIITIRDRF FT RTMVNVLGDAFGTGIVEKLSKKELEQMDVSSEVNIVNPFALESTILDNEDSDTKKSYVN FT GGFAVDKSDTISFTQTSQF" FT mRNA complement(join(4711155..4713096,4718419..4718537, FT 4719135..4719307,AL353151.26:3424..3543, FT AL353151.26:21855..22236)) FT /gene="AK3" FT /locus_tag="RP11-6J24.4-002" FT /product="adenylate kinase 3" FT /note="match: cDNAs: Em:AB020203 Em:AB020239 Em:AB021870 FT Em:AB021870.1 Em:AF417508.1 Em:AK001553.1 Em:AK001951.1 FT Em:AK007618.1 Em:AK008681.1 Em:AK027534.1 Em:BC013771.1 FT Em:BC016432.1 Em:BC019174.1 Em:D13062.1 Em:D85036 Em:M25757 FT Em:M25757.1" FT /note="match: ESTs: Em:AA007279 Em:AA165658 Em:AI008141 FT Em:AU130170.1 Em:AU136907.1 Em:AV691157.1 Em:BB759223.1 FT Em:BG682861.1 Em:BG698420.1 Em:BI328500.1 Em:BI553912.1 FT Em:BI561819.1 Em:BI601245.1 Em:BI601992.1 Em:BJ542207.1 FT Em:BM478239.1 Em:BM837013.1 Em:BQ270849.1 Em:BQ338087.1 FT Em:BQ650443.1 Em:D13062 Em:H31410.1 Em:H65871 Em:R70844" FT CDS complement(join(4712976..4713096,4718419..4718537, FT 4719135..4719307,AL353151.26:3424..3543, FT AL353151.26:21855..22005)) FT /gene="AK3" FT /locus_tag="RP11-6J24.4-002" FT /standard_name="OTTHUMP00000021016" FT /product="adenylate kinase 3" FT /note="match: proteins: Sw:P08760 Sw:P0A137 Sw:P27144 FT Sw:P29411 Sw:P49974 Sw:Q9UIJ7 Sw:Q9UIJ7 Sw:Q9WTP7 Sw:Q9WTP7 FT Sw:Q9WTP7 Sw:Q9WTP7 Sw:Q9WUR9 Sw:Q9WUS0 Tr:Q95J94 Tr:Q9D8W6 FT Tr:Q9VGU6" FT /protein_id="CAI41262.1" FT /translation="MGASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDN FT MLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQYSWLLDGFPRTLPQAEALDR FT AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRED FT DKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQTKVPQRSQK FT ASVTP" FT mRNA complement(join(4712045..4713096,4718419..4718537, FT 4719135..4719307,AL353151.26:3424..3543, FT AL353151.26:22890..22961)) FT /gene="AK3" FT /locus_tag="RP11-6J24.4-001" FT /product="adenylate kinase 3" FT /note="match: cDNAs: Em:AF183419.1" FT /note="match: ESTs: Em:AV733920.1" FT polyA_signal 4587446..4587451 FT polyA_site 4587469 FT polyA_site complement(4588821) FT misc_feature 4613709 FT /note="Clone_right_end: RP11-280I16" FT CDS complement(join(<4625341..4625566,4626426..4626485)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-005" FT /standard_name="OTTHUMP00000021012" FT /product="chromosome 9 open reading frame 68" FT /protein_id="CAI41263.1" FT /translation="MGPRPLEKGCFPGCFFRNSKEERHESRRPLSTSHEPIFPLNTIKM FT KLKENNLNRLPKGMQARAPSQYSTRHFFQDQPAQLNLGNNFKISGGSKPP" FT CDS 4633027..4633756 FT /pseudo FT /locus_tag="RP11-6J24.3-001" FT /product="ribosomal protein S6 (RPS6) pseudogene" FT /note="match: proteins: Sw:P05752 Sw:P39017 Sw:P47838 FT Sw:P62753 Sw:P62755 Sw:Q9C0Z7 Sw:Q9YGF2 Tr:O18506 Tr:P62754 FT Tr:P62754 Tr:P62754 Tr:P62754 Tr:Q29198 Tr:Q96DV6 FT Tr:Q9PTD6" FT mRNA join(AL162587.20:72702..73028,AL162587.20:126825..126965, FT 4561449..4561541,4564344..4564458,4566047..4566089, FT 4567669..4567767,4572204..4572388,4573907..4574014, FT 4576001..4576123,4576569..4576763,4583038..4583172, FT 4585312..4587469) FT /gene="SLC1A1" FT /locus_tag="RP11-6J24.1-001" FT /product="solute carrier family 1 (neuronal/epithelial high FT affinity glutamate transporter, system Xag), member 1" FT /note="match: cDNAs: Em:AB008536.1 Em:AF037982.1 FT Em:AF087578.1 Em:AF167075.2 Em:BC033040.1 Em:D43797.1 FT Em:L12411.1 Em:U03506.1 Em:U06469.1 Em:U08989.1 Em:U21104.1 FT Em:U39555.1 Em:U72534.1 Em:U73521.1 Em:U75214.1 FT Em:X94255.1" FT /note="match: ESTs: Em:AA191519.1 Em:AA243675.1 FT Em:AI220413.1 Em:AI435840.1 Em:AW045137.1 Em:AW235061.1 FT Em:AW318693.1 Em:AW951837.1 Em:AW953242.1 Em:AW963090.1 FT Em:BB597905.2 Em:BB745290.1 Em:BE868406.1 Em:BF351104.1 FT Em:BF788225.1 Em:BI157088.1 Em:BI158036.1 Em:BI546834.1 FT Em:BI598670.1 Em:BI762313.1 Em:BI964034.1 Em:BM674141.1 FT Em:BM715801.1 Em:BM717364.1 Em:BM922053.1 Em:BQ008494.1 FT Em:BQ029108.1" FT CDS join(AL162587.20:72938..73028,AL162587.20:126825..126965, FT 4561449..4561541,4564344..4564458,4566047..4566089, FT 4567669..4567767,4572204..4572388,4573907..4574014, FT 4576001..4576123,4576569..4576763,4583038..4583172, FT 4585312..4585558) FT /gene="SLC1A1" FT /locus_tag="RP11-6J24.1-001" FT /standard_name="OTTHUMP00000021006" FT /product="solute carrier family 1 (neuronal/epithelial high FT affinity glutamate transporter, system Xag), member 1" FT /note="match: proteins: Sw:P24942 Sw:P31597 Sw:P43005 FT Sw:P43005 Sw:P46411 Sw:P51906 Sw:P51907 Sw:Q95135 Tr:Q8VI14 FT Tr:Q9D393 Tr:Q9N1R4 Tr:Q9QWI2" FT /protein_id="CAI41264.1" FT /translation="MGKPARKGCEWKRFLKNNWVLLSTVAAVVLGITTGVLVREHSNLS FT TLEKFYFAFPGEILMRMLKLIILPLIISSMITGVAALDSNVSGKIGLRAVVYYFCTTLI FT AVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAMLDLIRNMFPENLVQACFQQYK FT TKREEVKPPSDPEMNMTEESFTAVMTTAISKNKTKEYKIVGMYSDGINVLGLIVFCLVF FT GLVIGKMGEKGQILVDFFNALSDATMKIVQIIMCYMPLGILFLIAGKIIEVEDWEIFRK FT LGLYMATVLTGLAIHSIVILPLIYFIVVRKNPFRFAMGMAQALLTALMISSSSATLPVT FT FRCAEENNQVDKRITRFVLPVGATINMDGTALYEAVAAVFIAQLNDLDLGIGQIITISI FT TATSASIGAAGVPQAGLVTMVIVLSAVGLPAEDVTLIIAVDWLLDRFRTMVNVLGDAFG FT TGIVEKLSKKELEQMDVSSEVNIVNPFALESTILDNEDSDTKKSYVNGGFAVDKSDTIS FT FTQTSQF" FT polyA_signal complement(4646320..4646325) FT misc_feature 4656242..4656377 FT /note="Single clone region. ALU region. Assembly confirmed FT by ECORI + HINDIII digest" FT mRNA complement(join(<4622409..4622510,4625327..4625566, FT 4629091..4629168,4635275..4635399,4646487..4646528, FT 4656041..4656089,4661899..>4662054)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-007" FT /product="chromosome 9 open reading frame 68" FT /note="match: ESTs: Em:BI520328.1" FT CDS complement(join(<4622409..4622510,4625327..4625566, FT 4629091..4629168,4635275..4635399,4646487..4646528, FT 4656041..4656089,4661899..>4662054)) FT /codon_start=1 FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-007" FT /standard_name="OTTHUMP00000021014" FT /product="chromosome 9 open reading frame 68" FT /protein_id="CAI41265.1" FT /translation="VFFLFKISCPGVFLPGKQDVYLGVYLMNQYLETNSFPSAFPIMIQ FT ESMRFEKVFESAVDPGAVVDLLESFLARFELIQLVPPVWDELAYYEENTRDFLFPEPKL FT TPSHPRRCREVLMKTALGFPGIAPKIEFSTRTAIRECVFLHRNRFLEERHESRRPLSTS FT HEPIFPLNTIKMKLKENNLNRLPKGMQARAPSQYSTRHFFQDQPAQLNLGNNFKISGGS FT KPPFVVRHVDSAKPFGENISEHHLRRSRRKSKFSDFPFPTRR" FT mRNA 4662315..4665255 FT /gene="PPAPDC2" FT /locus_tag="RP11-6J24.2-001" FT /product="phosphatidic acid phosphatase type 2 domain FT containing 2" FT /note="match: cDNAs: Em:AF147395.1 Em:AK016572.1 FT Em:AK074672.1 Em:AK075207.1 Em:BC036833.1" FT /note="match: ESTs: Em:AA357748.1 Em:AI249502.1 FT Em:AI651420.1 Em:AI760176.1 Em:AV653095.1 Em:AW880652.1 FT Em:AW962968.1 Em:BF033134.1 Em:BF511821.1 Em:BG291626.1 FT Em:BG619394.1 Em:BI464052.1 Em:BQ027083.1 Em:BQ049616.1 FT Em:BQ069029.1" FT CDS 4662376..4663263 FT /gene="PPAPDC2" FT /locus_tag="RP11-6J24.2-001" FT /standard_name="OTTHUMP00000021003" FT /product="phosphatidic acid phosphatase type 2 domain FT containing 2" FT /note="match: proteins: Sw:Q9D4F2" FT /protein_id="CAI41266.1" FT /translation="MPSPRRSMEGRPLGVSASSSSSSPGSPAHGGGGGGSRFEFQSLLS FT SRATAVDPTCARLRASESPVHRRGSFPLAAAGPSQSPAPPLPEEDRMDLNPSFLGIALR FT SLLAIDLWLSKKLGVCAGESSSWGSVRPLMKLLEISGHGIPWLLGTLYCLCRSDSWAGR FT EVLMNLLFALLLDLLLVALIKGLVRRRRPAHNQMDMFVTLSVDKYSFPSGHATRAALMS FT RFILNHLVLAIPLRVLVVLWAFVLGLSRVMLGRHNVTDVAFGFFLGYMQYSIVDYCWLS FT PHNAPVLFLLWSQR" FT polyA_signal 4665234..4665239 FT polyA_site 4665258 FT mRNA complement(join(4588821..4588961,4596435..4596530, FT 4600653..4600809,4604179..4604269,4605347..4605440, FT 4617923..4618110,4618864..4618898,4622408..4622510, FT 4625327..4625566,4629091..4629168,4635275..4635399, FT 4656041..4656089,4661899..4662036,4666212..4666423)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-002" FT /product="chromosome 9 open reading frame 68" FT /note="match: cDNAs: Em:BC034293.1" FT mRNA complement(join(4625404..4625566,4626426..4626555, FT 4629091..4629168,4635275..4635399,4656041..4656089, FT 4661899..4662036,4666212..4666423)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-004" FT /product="chromosome 9 open reading frame 68" FT /note="match: ESTs: Em:BI827091.1" FT CDS complement(join(4625553..4625566,4626426..4626555, FT 4629091..4629168,4635275..4635399,4656041..4656089, FT 4661899..4662036,4666212..4666250)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-004" FT /standard_name="OTTHUMP00000021011" FT /product="chromosome 9 open reading frame 68" FT /protein_id="CAC12704.1" FT /translation="MPLEVVVELQIRAISCPGVFLPGKQDVYLGVYLMNQYLETNSFPS FT AFPIMIQESMRFEKVFESAVDPGAVVDLLEMWDELAYYEENTRDFLFPEPKLTPSHPRR FT CREVLMKTALGFPGIAPKIEFSTRTAIRECVFLHRNRFLGWGNKGKMLVQQEHRSLKKK FT LNRNGTQTSGEGLLSWMLLQEFEGRKT" FT mRNA complement(join(4646299..4646528,4656041..4656089, FT 4661899..4662036,4666212..4666307)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-006" FT /product="chromosome 9 open reading frame 68" FT /note="match: ESTs: Em:AI695191.1 Em:AW611804.1 FT Em:BF194854.1" FT CDS complement(join(4646455..4646528,4656041..4656089, FT 4661899..4662036,4666212..4666250)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-006" FT /standard_name="OTTHUMP00000021013" FT /product="chromosome 9 open reading frame 68" FT /protein_id="CAI41269.1" FT /translation="MPLEVVVELQIRAISCPGVFLPGKQDVYLGVYLMNQYLETNSFPS FT AFPIMIQESMRFEKVFESAVDPGAVVDLLESFLARFELIQLVPPGNVAVNPFLN" FT mRNA complement(join(<4625341..4625566,4626426..4626555, FT 4629091..4629161,4666311..4666380)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-005" FT /product="chromosome 9 open reading frame 68" FT /note="match: ESTs: Em:AW246362.1" FT mRNA complement(join(4588821..4588961,4596435..4596530, FT 4600653..4600809,4604179..4604269,4605347..4605440, FT 4617403..4617523,4617923..4618110,4618864..4618898, FT 4622408..4622510,4625327..4625566,4627753..4627856, FT 4629091..4629168,4635275..4635399,4646487..4646528, FT 4656041..4656089,4661899..4662036,4666212..4666256, FT 4666337..4666428)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-008" FT /product="chromosome 9 open reading frame 68" FT /note="match: cDNAs: Em:BC036349.1" FT mRNA complement(join(4625509..4625566,4626426..4626555, FT 4627753..4627856,4629091..4629168,4635275..4635399, FT 4646487..4646528,4656041..4656089,4661899..4662036, FT 4666212..4666256,4666337..4666428)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-003" FT /product="chromosome 9 open reading frame 68" FT /note="match: ESTs: Em:BI826180.1" FT mRNA complement(join(AL162587.20:135644..136646, FT 4600653..4600809,4604179..4604269,4605347..4605440, FT 4622408..4622510,4625217..4625566,4626426..4626555, FT 4629091..4629168,4635275..4635399,4656041..4656089, FT 4661899..4662036,4666212..4666256,4666435..4666508)) FT /gene="C9orf68" FT /locus_tag="RP11-280I16.2-001" FT /product="chromosome 9 open reading frame 68" FT /note="match: cDNAs: Em:AK000920.1" FT /note="match: ESTs: Em:AU117437.1" FT mRNA join(4679559..4679899,4684877..4685158,4688513..4688606, FT 4697096..4697211,4697757..4697879,4701864..4702028, FT 4703086..4703208) FT /gene="CDC37L1" FT /locus_tag="RP11-6J24.5-002" FT /product="cell division cycle 37 homolog (S. FT cerevisiae)-like 1" FT /note="match: cDNAs: Em:AK016651.1" FT /note="match: ESTs: Em:AI058364.1 Em:BE993989.1 FT Em:BF552510.1" FT mRNA join(4679566..4679899,4684877..4685158,4688513..4688606, FT 4697096..4697211,4697757..4697879,4701864..4702028, FT 4706011..4708398) FT /gene="CDC37L1" FT /locus_tag="RP11-6J24.5-001" FT /product="cell division cycle 37 homolog (S. FT cerevisiae)-like 1" FT /note="match: cDNAs: Em:AK000497.1 Em:AK000646.1 FT Em:AK012312.1 Em:AK018787.1 Em:BC014133.1 Em:BC031761.1" FT /note="match: ESTs: Em:AA601540.1 Em:AA897202.1 FT Em:AI200705.1 Em:AI378864.1 Em:AI810614.1 Em:AL571641.1 FT Em:AL710112.1 Em:AL713385.1 Em:AW450037.1 Em:AW594027.1 FT Em:AW966620.1 Em:BE090931.1 Em:BE090976.1 Em:BE091057.1 FT Em:BF110120.1 Em:BF695226.1 Em:BG383220.1 Em:BG678787.1 FT Em:BI546979.1 Em:BI561666.1 Em:BI827259.1 Em:BM021147.1 FT Em:BM021406.1 Em:BM548514.1 Em:BM723544.1 Em:BM800645.1 FT Em:BQ006919.1 Em:BQ186452.1 Em:BQ771929.1 Em:F09540.1 FT Em:F11893.1 Em:R53914.1 Em:T65394.1 Em:Z19674.1 FT Em:Z38766.1" FT mRNA join(4679715..4679899,4684877..4685475) FT /gene="CDC37L1" FT /locus_tag="RP11-6J24.5-003" FT /product="cell division cycle 37 homolog (S. FT cerevisiae)-like 1" FT /note="match: ESTs: Em:BG715682.1 Em:BI596617.1 FT Em:BI668423.1 Em:BI668843.1" FT CDS join(4679768..4679899,4684877..4685158,4688513..4688606, FT 4697096..4697211,4697757..4697879,4701864..4702028, FT 4703086..4703100) FT /gene="CDC37L1" FT /locus_tag="RP11-6J24.5-002" FT /standard_name="OTTHUMP00000021002" FT /product="cell division cycle 37 homolog (S. FT cerevisiae)-like 1" FT /protein_id="CAI41270.1" FT /translation="MEQPWPPPGPWSLPRAEGEAEEESDFDVFPSSPRCPQLPGGGAQM FT YSHGIELACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELR FT QREEEWRQKEEALVQREKMCLWSTDAISKDVFNKSFINQDKRKDTEDEDKSESFMQKYE FT QKIRHFGMLSRWDDSQRFLSDHPYLVCEETAKYLILWCFHLEAEKKGALMEQIAHQAVV FT MQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYSQSQSFQP FT MTVQNHVPHSGVGSIGLLESLPQAPRF" FT CDS join(4679768..4679899,4684877..4685158,4688513..4688606, FT 4697096..4697211,4697757..4697879,4701864..4702028, FT 4706011..4706112) FT /gene="CDC37L1" FT /locus_tag="RP11-6J24.5-001" FT /standard_name="OTTHUMP00000021001" FT /product="cell division cycle 37 homolog (S. FT cerevisiae)-like 1" FT /note="match: proteins: Tr:Q9H577 Tr:Q9NWS3 Tr:Q9NX16" FT /protein_id="CAC12705.1" FT /translation="MEQPWPPPGPWSLPRAEGEAEEESDFDVFPSSPRCPQLPGGGAQM FT YSHGIELACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELR FT QREEEWRQKEEALVQREKMCLWSTDAISKDVFNKSFINQDKRKDTEDEDKSESFMQKYE FT QKIRHFGMLSRWDDSQRFLSDHPYLVCEETAKYLILWCFHLEAEKKGALMEQIAHQAVV FT MQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYSQSQSFQP FT MTVQNHVPHSGVGSIGLLESLPQNPDYLQYSISTALCSLNSVVHKEDDEPKMMDTV" FT misc_feature 4701258 FT /note="Clone_left_end: RP11-307I14" FT mRNA join(AL162587.20:142063..142338,4561449..4561541, FT 4564344..4564458) FT /gene="SLC1A1" FT /locus_tag="RP11-6J24.1-003" FT /product="solute carrier family 1 (neuronal/epithelial high FT affinity glutamate transporter, system Xag), member 1" FT /note="match: ESTs: Em:AA278256.1" FT polyA_signal 4706574..4706579 FT polyA_site 4706594 FT polyA_site 4707648 FT polyA_signal 4707663..4707664 FT polyA_signal 4708377..4708382 FT polyA_site 4708399 FT polyA_site complement(4711155) FT polyA_signal complement(4711173..4711178) FT polyA_site complement(4712062) FT polyA_signal complement(4712066..4712071) FT misc_feature 4713802 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 1.3kb by BAMHI and ECORI restriction enzyme FT digest data" FT misc_feature 4720982 FT /note="Clone_right_end: RP11-6J24" FT misc_feature 4721083..4831655 FT /note="annotated region of clone" FT CDS complement(join(AL136231.12:151906..152026, FT AL136231.12:157349..157467,AL136231.12:158065..158237, FT 4722506..4722566)) FT /gene="AK3" FT /locus_tag="RP11-6J24.4-001" FT /standard_name="OTTHUMP00000021015" FT /product="adenylate kinase 3" FT /protein_id="CAH72282.1" FT /translation="MTRLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLN FT VPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLK FT AYEDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQTKVPQRSQKASVTP" FT misc_feature 4723443..4723491 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 4732883..4733255 FT /note="Single clone region. Assembly consistent with FT restriction digest data" FT misc_feature 4733255 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 60bp by restriction digest data" FT mRNA complement(join(AL136231.12:150085..152026, FT AL136231.12:157349..157467,AL136231.12:158065..158237, FT 4722506..4722625,4740937..4741318)) FT /gene="AK3" FT /locus_tag="RP11-6J24.4-002" FT /product="adenylate kinase 3" FT /note="match: ESTs: Em:AA007279 Em:AA165658 Em:AI008141 FT Em:AU130170.1 Em:AU136907.1 Em:AV691157.1 Em:BB759223.1 FT Em:BG682861.1 Em:BG698420.1 Em:BI328500.1 Em:BI553912.1 FT Em:BI561819.1 Em:BI601245.1 Em:BI601992.1 Em:BJ542207.1 FT Em:BM478239.1 Em:BM837013.1 Em:BQ270849.1 Em:BQ338087.1 FT Em:BQ650443.1 Em:D13062 Em:H31410.1 Em:H65871 Em:R70844" FT /note="match: cDNAs: Em:AB020203 Em:AB020239 Em:AB021870 FT Em:AB021870.1 Em:AF417508.1 Em:AK001553.1 Em:AK001951.1 FT Em:AK007618.1 Em:AK008681.1 Em:AK027534.1 Em:BC013771.1 FT Em:BC016432.1 Em:BC019174.1 Em:D13062.1 Em:D85036 Em:M25757 FT Em:M25757.1" FT CDS complement(join(AL136231.12:151906..152026, FT AL136231.12:157349..157467,AL136231.12:158065..158237, FT 4722506..4722625,4740937..4741087)) FT /gene="AK3" FT /locus_tag="RP11-6J24.4-002" FT /standard_name="OTTHUMP00000021016" FT /product="adenylate kinase 3" FT /note="match: proteins: Sw:P08760 Sw:P0A137 Sw:P27144 FT Sw:P29411 Sw:P49974 Sw:Q9UIJ7 Sw:Q9UIJ7 Sw:Q9WTP7 Sw:Q9WTP7 FT Sw:Q9WTP7 Sw:Q9WTP7 Sw:Q9WUR9 Sw:Q9WUS0 Tr:Q95J94 Tr:Q9D8W6 FT Tr:Q9VGU6" FT /protein_id="CAH72283.1" FT /translation="MGASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDN FT MLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQYSWLLDGFPRTLPQAEALDR FT AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRED FT DKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQTKVPQRSQK FT ASVTP" FT mRNA complement(join(AL136231.12:150975..152026, FT AL136231.12:157349..157467,AL136231.12:158065..158237, FT 4722506..4722625,4741972..4742043)) FT /gene="AK3" FT /locus_tag="RP11-6J24.4-001" FT /product="adenylate kinase 3" FT /note="match: ESTs: Em:AV733920.1" FT /note="match: cDNAs: Em:AF183419.1" FT polyA_signal complement(4781443..4781448) FT CDS complement(4781475..4782078) FT /pseudo FT /locus_tag="RP11-307I14.2-001" FT /product="ribosomal protein S5 (RPS5) pseudogene" FT /note="match: proteins: Sw:O14277 Sw:O27130 Sw:P24050 FT Sw:P46782 Sw:P97461 Sw:Q24186 Sw:Q8ZYK5 Sw:Q9P3T6 Sw:Q9VFE4 FT Tr:Q24186 Tr:Q29323 Tr:Q8JHH3 Tr:Q90YR9 Tr:Q91V55 FT Tr:Q95V33" FT mRNA join(4792869..4793227,4823548..4823619,4826858..4827033, FT AL158147.17:3499..3573,AL158147.17:4486..4610, FT AL158147.17:11577..11702,AL158147.17:14870..15026, FT AL158147.17:19792..19895,AL158147.17:30470..31409) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-001" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: ESTs: Em:AA722896.1 Em:AI222106.1 FT Em:AI888749.1 Em:AL518076.1 Em:AL518476.1 Em:AL529407.1 FT Em:AL545511.1 Em:AL547476.1 Em:AU128358.1 Em:AV717481.1 FT Em:AV736916.1 Em:AV741570.1 Em:AV741594.1 Em:AW102650.1 FT Em:BE742227.1 Em:BE796777.1 Em:BG257857.1 Em:BG259035.1 FT Em:BG342031.1 Em:BI827154.1 Em:BM149809.1 Em:BM150321.1 FT Em:BM837664.1 Em:BM920862.1 Em:BQ071500.1 Em:BQ226469.1 FT Em:D82436.1" FT /note="match: cDNAs: Em:AF067172.1 Em:AF161456.1 FT Em:AJ276894.1 Em:AK009709.1 Em:AK012585.1 Em:AK022904.1 FT Em:BC001025.1 Em:BC004574.1" FT mRNA join(4792976..4793227,4823548..4823619,4826858..4827337) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-004" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: ESTs: Em:BQ933532.1" FT mRNA join(4792980..4793227,4823548..4823619, FT AL158147.17:3499..3573,AL158147.17:4486..4610, FT AL158147.17:11577..11702,AL158147.17:14870..15026, FT AL158147.17:19792..19895,AL158147.17:30470..>30518) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-003" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: ESTs: Em:AL560629.1" FT mRNA join(4793087..4793227,4823548..4823619, FT AL158147.17:3499..3573,AL158147.17:11550..11702) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-005" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: ESTs: Em:AA454129.1" FT CDS join(4793092..4793227,4823548..4823619,4826858..4827033, FT AL158147.17:3499..3573,AL158147.17:4486..4610, FT AL158147.17:11577..11702,AL158147.17:14870..15026, FT AL158147.17:19792..19895,AL158147.17:30470..30620) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-001" FT /standard_name="OTTHUMP00000021017" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: proteins: Sw:P56175 Sw:P56175 Sw:Q08096 FT Sw:Q09870 Sw:Q23400 Sw:Q9C578 Sw:Q9JJT0 Sw:Q9JJT0 FT Sw:Q9Y2P8" FT /protein_id="CAH72285.1" FT /translation="MATQAHSLSYAGCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLR FT DFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVEHDCSVLRGIGYYLESLLC FT LAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFELKIVRRGMPPGG FT GGEVVFSCPVRKVLKPIQLTDPGKIKRIRGMAYSVRVSPQMANRIVDSARSILNKFIPD FT IYIYTDHMKGVNSGKSPGFGLSLVAETTSGTFLSAELASNPQGQGAAVLPEDLGRNCAR FT LLLEEIYRGGCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQIMFK FT IETKPCGEELKGGDKVLMTCVGIGFSNLSKTLK" FT CDS join(4793092..4793227,4823548..4823619,4826858..4827177) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-004" FT /standard_name="OTTHUMP00000021020" FT /product="RNA terminal phosphate cyclase-like 1" FT /protein_id="CAH72286.1" FT /translation="MATQAHSLSYAGCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLR FT DFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVEHDCSVLRGIGYYLESLLC FT LAPFMKHPLKIVLRGVTNDQVDPSVSIENKPWCGFCFVSCHNPTCEKKVPYKAQFYYKC FT ILLLLFTLRFRG" FT polyA_signal complement(4802540..4802545) FT CDS complement(4803799..4804972) FT /pseudo FT /locus_tag="RP11-307I14.3-001" FT /product="Kruppel-like factor 4 (gut) (KLF4) pseudogene" FT /note="match: proteins: Sw:O08584 Sw:O08584 Sw:O35819 FT Sw:O43474 Sw:O43474 Sw:O75840 Sw:O95600 Sw:P57682 Sw:Q60793 FT Sw:Q60843 Sw:Q99612 Sw:Q99JB0 Sw:Q9ET58 Sw:Q9Y4X4 Sw:Q9Y5W3 FT Tr:Q8N717 Tr:Q8QGW5 Tr:Q8VDZ7 Tr:Q8WWI3 Tr:Q90XE7 Tr:Q923V7 FT Tr:Q99612 Tr:Q99JB0 Tr:Q9ESF3 Tr:Q9R255 Tr:Q9TZ64 FT Tr:Q9VZN4" FT misc_feature 4827656 FT /note="Clone_left_end: RP11-125K10" FT misc_feature 4831656..5001841 FT /note="annotated region of clone" FT CDS join(4834156..4834265,4841232..4841357,4844525..4844681, FT 4849447..4849550,4860125..>4860173) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-003" FT /standard_name="OTTHUMP00000021019" FT /product="RNA terminal phosphate cyclase-like 1" FT /protein_id="CAH70317.1" FT /translation="MPPGGGGEVVFSCPVRKVLKPIQLTDPGKIKRIRGMAYSVRVSPQ FT MANRIVDSARSILNKFIPDIYIYTDHMKGVNSGKSPGFGLSLVAETTSGTFLSAELASN FT PQGQGAAVLPEDLGRNCARLLLEEIYRGGCVDSTNQSLALLLMTLGQQDVSKVLLGPLS FT PYTIEFLRHLKSFFQIMFK" FT mRNA join(4836726..4836764,4841205..4841357,4844525..4844681, FT 4849447..4849550,4860125..4860472) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-002" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: ESTs: Em:BG687687.1" FT mRNA join(4839518..4839693,4841205..4841357,4844525..4844681, FT 4849447..4849550,4860125..4860292) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-006" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: ESTs: Em:BG699982.1" FT mRNA join(4839777..4839859,4841205..4841357,4844525..4844681, FT 4849447..>4849550) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-007" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: ESTs: Em:AA344149.1 Em:AV650415.1 FT Em:AW956566.1 Em:BG899183.1" FT CDS join(4841206..4841357,4844525..4844681,4849447..>4849550) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-007" FT /standard_name="OTTHUMP00000021022" FT /product="RNA terminal phosphate cyclase-like 1" FT /protein_id="CAH70318.1" FT /translation="MTSLTPGCRYSVRVSPQMANRIVDSARSILNKFIPDIYIYTDHMK FT GVNSGKSPGFGLSLVAETTSGTFLSAELASNPQGQGAAVLPEDLGRNCARLLLEEIYRG FT GCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYT" FT CDS join(4841206..4841357,4844525..4844681,4849447..4849550, FT 4860125..4860275) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-002" FT /standard_name="OTTHUMP00000021018" FT /product="RNA terminal phosphate cyclase-like 1" FT /protein_id="CAH70319.1" FT /translation="MTSLTPGCRYSVRVSPQMANRIVDSARSILNKFIPDIYIYTDHMK FT GVNSGKSPGFGLSLVAETTSGTFLSAELASNPQGQGAAVLPEDLGRNCARLLLEEIYRG FT GCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQIMFKIETKPCGEE FT LKGGDKVLMTCVGIGFSNLSKTLK" FT mRNA complement(4850299..4850373) FT /locus_tag="RP11-125K10.5-001" FT /product="miR-101-precursor-9 micro RNA" FT /note="match: cDNAs: Em:AF480540.1" FT misc_feature 4859575 FT /note="Clone_right_end: RP11-307I14" FT mRNA join(4860454..4860901,4884488..4885917) FT /locus_tag="RP11-125K10.4-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AU118979.1" FT /note="match: cDNAs: Em:AK021739.1" FT polyA_signal 4861045..4861050 FT polyA_site 4861064 FT mRNA join(AL353151.26:73787..74145,AL353151.26:104466..104537, FT AL353151.26:107776..107951,4833154..4833228, FT 4834141..4834265,4841232..4841357,4844525..4844681, FT 4849447..4849550,4860125..4861064) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-001" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: ESTs: Em:AA722896.1 Em:AI222106.1 FT Em:AI888749.1 Em:AL518076.1 Em:AL518476.1 Em:AL529407.1 FT Em:AL545511.1 Em:AL547476.1 Em:AU128358.1 Em:AV717481.1 FT Em:AV736916.1 Em:AV741570.1 Em:AV741594.1 Em:AW102650.1 FT Em:BE742227.1 Em:BE796777.1 Em:BG257857.1 Em:BG259035.1 FT Em:BG342031.1 Em:BI827154.1 Em:BM149809.1 Em:BM150321.1 FT Em:BM837664.1 Em:BM920862.1 Em:BQ071500.1 Em:BQ226469.1 FT Em:D82436.1" FT /note="match: cDNAs: Em:AF067172.1 Em:AF161456.1 FT Em:AJ276894.1 Em:AK009709.1 Em:AK012585.1 Em:AK022904.1 FT Em:BC001025.1 Em:BC004574.1" FT mRNA join(AL353151.26:73898..74145,AL353151.26:104466..104537, FT 4833154..4833228,4834141..4834265,4841232..4841357, FT 4844525..4844681,4849447..4849550,4860125..>4860173) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-003" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: ESTs: Em:AL560629.1" FT mRNA join(AL353151.26:74005..74145,AL353151.26:104466..104537, FT 4833154..4833228,4841205..4841357) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-005" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: ESTs: Em:AA454129.1" FT CDS join(AL353151.26:74010..74145,AL353151.26:104466..104537, FT AL353151.26:107776..107951,4833154..4833228, FT 4834141..4834265,4841232..4841357,4844525..4844681, FT 4849447..4849550,4860125..4860275) FT /gene="RCL1" FT /locus_tag="RP11-125K10.1-001" FT /standard_name="OTTHUMP00000021017" FT /product="RNA terminal phosphate cyclase-like 1" FT /note="match: proteins: Sw:P56175 Sw:P56175 Sw:Q08096 FT Sw:Q09870 Sw:Q23400 Sw:Q9C578 Sw:Q9JJT0 Sw:Q9JJT0 FT Sw:Q9Y2P8" FT /protein_id="CAH70320.1" FT /translation="MATQAHSLSYAGCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLR FT DFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVEHDCSVLRGIGYYLESLLC FT LAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFELKIVRRGMPPGG FT GGEVVFSCPVRKVLKPIQLTDPGKIKRIRGMAYSVRVSPQMANRIVDSARSILNKFIPD FT IYIYTDHMKGVNSGKSPGFGLSLVAETTSGTFLSAELASNPQGQGAAVLPEDLGRNCAR FT LLLEEIYRGGCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQIMFK FT IETKPCGEELKGGDKVLMTCVGIGFSNLSKTLK" FT misc_feature 4919545 FT /note="Clone_left_end: RP11-509D8" FT CDS complement(join(4944673..4945350,4945656..4945902)) FT /pseudo FT /locus_tag="RP11-125K10.2-001" FT /product="heterogeneous nuclear ribonucleoprotein A1 FT (HNRPA1) pseudogene" FT /note="match: proteins: Sw:P17130 Sw:P21522 Sw:P22626 FT Sw:P49312 Sw:Q28521 Tr:P09651 Tr:P09651 Tr:P49312 Tr:Q91ZR9 FT Tr:Q9BSM5 Tr:Q9CX86" FT mRNA join(4985033..4985173,4985940..4986022, FT AL161450.14:3254..>3356) FT /gene="JAK2" FT /locus_tag="RP11-39K24.3-002" FT /product="Janus kinase 2 (a protein tyrosine kinase)" FT /note="match: ESTs: Em:AL589569.1" FT mRNA join(4985245..4985630,4985940..4986022, FT AL161450.14:3254..3504,AL161450.14:11074..11197, FT AL161450.14:25694..25811,AL161450.14:31977..32122, FT AL161450.14:35854..36175,AL161450.14:36960..37079, FT AL161450.14:46174..46331,AL161450.14:47969..48080, FT AL161450.14:50313..50499,AL161450.14:51216..51343, FT AL161450.14:53783..53917,AL161450.14:54989..55076, FT AL161450.14:58744..58871,AL161450.14:59597..59735, FT AL161450.14:61520..61671,AL161450.14:61824..61974, FT AL161450.14:63016..63152,AL161450.14:70965..71154, FT AL161450.14:71737..71861,AL161450.14:72030..72202, FT AL161450.14:104295..104412,AL161450.14:107624..107737, FT AL161450.14:107975..109474) FT /gene="JAK2" FT /locus_tag="RP11-39K24.3-001" FT /product="Janus kinase 2 (a protein tyrosine kinase)" FT /note="match: ESTs: Em:AA023398.1 Em:AA111135.1 FT Em:AA259122.1 Em:AA445725.1 Em:AA453345.1 Em:AA464860.1 FT Em:AI367869.1 Em:AL700201.1 Em:AU134500.1 Em:AU155461.1 FT Em:BB534849.2 Em:BB712091.1 Em:BE242174.1 Em:BE242517.1 FT Em:BF367544.1 Em:BF846255.1 Em:BG870416.1 Em:BI687358.1 FT Em:BI734179.1 Em:BI991437.1 Em:BM145230.1 Em:BM146583.1 FT Em:BM147640.1 Em:BM150680.1 Em:BM193228.1 Em:BM193847.1 FT Em:BM905676.1 Em:BM964423.1 Em:BQ130120.1 Em:BQ130370.1 FT Em:BQ899824.1" FT /note="match: cDNAs: Em:AB006011.1 Em:AB036336.1 FT Em:AB036337.1 Em:AF001362.1 Em:AF005216.1 Em:AF058925.1 FT Em:L16956.1 Em:U13396.1" FT misc_feature 4999841 FT /note="Clone_right_end: RP11-125K10" FT misc_feature 5001842..5018809 FT /note="annotated region of clone" FT misc_feature 5018610 FT /note="Clone_left_end: RP11-39K24" FT misc_feature 5018810..5189855 FT /note="annotated region of clone" FT CDS join(5021988..5022213,5029783..5029906,5044403..5044520, FT 5050686..5050831,5054563..5054884,5055669..5055788, FT 5064883..5065040,5066678..5066789,5069022..5069208, FT 5069925..5070052,5072492..5072626,5073698..5073785, FT 5077453..5077580,5078306..5078444,5080229..5080380, FT 5080533..5080683,5081725..5081861,5089674..5089863, FT 5090446..5090570,5090739..5090911,5123004..5123121, FT 5126333..5126446,5126684..5126791) FT /gene="JAK2" FT /locus_tag="RP11-39K24.3-001" FT /standard_name="OTTHUMP00000021024" FT /product="Janus kinase 2 (a protein tyrosine kinase)" FT /note="match: proteins: Sw:O60674 Sw:Q62120 Sw:Q62689 FT Tr:O19064" FT /protein_id="CAD13329.1" FT /translation="MGMACLTMTEMEGTSTSSIYQNGDISGNANSMKQIDPVLQVYLYH FT SLGKSEADYLTFPSGEYVAEEICIAASKACGITPVYHNMFALMSETERIWYPPNHVFHI FT DESTRHNVLYRIRFYFPRWYCSGSNRAYRHGISRGAEAPLLDDFVMSYLFAQWRHDFVH FT GWIKVPVTHETQEECLGMAVLDMMRIAKENDQTPLAIYNSISYKTFLPKCIRAKIQDYH FT ILTRKRIRYRFRRFIQQFSQCKATARNLKLKYLINLETLQSAFYTEKFEVKEPGSGPSG FT EEIFATIIITGNGGIQWSRGKHKESETLTEQDLQLYCDFPNIIDVSIKQANQEGSNESR FT VVTIHKQDGKNLEIELSSLREALSFVSLIDGYYRLTADAHHYLCKEVAPPAVLENIQSN FT CHGPISMDFAISKLKKAGNQTGLYVLRCSPKDFNKYFLTFAVERENVIEYKHCLITKNE FT NEEYNLSGTKKNFSSLKDLLNCYQMETVRSDNIIFQFTKCCPPKPKDKSNLLVFRTNGV FT SDVPTSPTLQRPTHMNQMVFHKIRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHET FT EVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLD FT TYLKKNKNCINILWKLEVAKQLAWAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPF FT IKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKP FT LSALDSQRKLQFYEDRHQLPAPKWAELANLINNCMDYEPDFRPSFRAIIRDLNSLFTPD FT YELLTENDMLPNMRIGALGFSGAFEDRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPL FT QDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIME FT YLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENR FT VKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF FT TYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWN FT NNVNQRPSFRDLALRVDQIRDNMAG" FT CDS join(5040945..5041591,5041633..5041940) FT /pseudo FT /locus_tag="RP11-39K24.2-002" FT /product="casein kinase pseudogene" FT /note="match: proteins: Sw:P05986 Sw:P32023 Sw:P35509 FT Sw:P40233 Sw:P40234 Sw:P48730 Sw:P67963 Sw:P78368 Sw:Q06486 FT Sw:Q62761 Sw:Q62762 Sw:Q62763 Sw:Q9Y6M4 Tr:O82321 Tr:Q9VEX2 FT Tr:Q9VQE3" FT mRNA join(5044430..5044520,5050686..5050831,5054563..5054637, FT 5054735..5054789) FT /gene="JAK2" FT /locus_tag="RP11-39K24.3-003" FT /product="Janus kinase 2 (a protein tyrosine kinase)" FT /note="match: ESTs: Em:AA198682.1" FT CDS complement(5084999..5086112) FT /pseudo FT /locus_tag="RP11-39K24.9-001" FT /product="trans-prenyltransferase (TPT) pseudogene" FT /note="match: proteins: Sw:O43091 Sw:P31114 Sw:Q33DR2 FT Sw:Q5T2R2 Sw:Q9TLS1 Tr:O06428 Tr:O24743 Tr:O50410 Tr:Q8NJ19 FT Tr:Q8RIN0 Tr:Q8RWM1 Tr:Q8VJ17 Tr:Q9CZQ1 Tr:Q9V9Z3" FT CDS 5091093..5091600 FT /pseudo FT /locus_tag="RP11-39K24.5-001" FT /product="mitochondrially encoded NADH dehydrogenase 6 FT (MT-ND6) pseuodgene" FT /note="match: proteins: Sw:O79438 Sw:P03923 Sw:P92700 FT Tr:Q8LX54 Tr:Q94YC2 Tr:Q9B0M9 Tr:Q9B1K4 Tr:Q9B2U4 Tr:Q9GA19 FT Tr:Q9XMJ6" FT CDS 5094139..5095014 FT /pseudo FT /locus_tag="RP11-39K24.11-001" FT /product="mitochondrially encoded NADH dehydrogenase 1 FT (MT-ND1) pseudogene" FT /note="match: proteins: Sw:P03886 Sw:P03889 Sw:P09045 FT Sw:P0AFD4 Sw:P12772 Sw:P23650 Sw:P26845 Sw:P33502 Sw:P34846 FT Sw:P48174 Sw:P48898 Sw:P48899 Sw:P92718 Sw:Q37714 Sw:Q60019 FT Sw:Q8M899 Sw:Q9ZCF7 Sw:Q9ZXY4 Tr:O21242 Tr:O63587 Tr:O63624 FT Tr:Q8M2B9 Tr:Q9GA30" FT CDS 5096666..5098193 FT /pseudo FT /locus_tag="RP11-39K24.4-001" FT /product="mitochondrially encoded cytochrome c oxidase I FT (MT-CO1) pseudogene" FT /note="match: proteins: Sw:O03198 Sw:O79403 Sw:O79672 FT Sw:P00395 Sw:P05502 Sw:P12786 Sw:P24983 Sw:P41293 Sw:P48659 FT Sw:P60621 Sw:P92477 Sw:P92692 Sw:Q34800 Sw:Q9T9W1 Sw:Q9T9X0 FT Tr:O99040 Tr:Q8WCW6 Tr:Q94ZL8 Tr:Q9B2V2 Tr:Q9B2V6 Tr:Q9B812 FT Tr:Q9B858 Tr:Q9B859 Tr:Q9B861 Tr:Q9G7S4 Tr:Q9MEV8 FT Tr:Q9T9X7" FT CDS join(5098341..5098695,5099001..5099325) FT /pseudo FT /locus_tag="RP11-39K24.14-001" FT /product="mitochondrially encoded cytochrome c oxidase II FT (MT-CO2) pseudogene" FT /note="match: proteins: Sw:O78750 Sw:P00405 Sw:P26456 FT Sw:P26457 Sw:P29870 Sw:P43373 Sw:P48870 Sw:P50662 Sw:P50667 FT Sw:P50679 Sw:P50680 Sw:P50685 Sw:P50686 Sw:P50690 Sw:P68530 FT Sw:P98032 Sw:P98046" FT CDS 5099560..5100229 FT /pseudo FT /locus_tag="RP11-39K24.12-001" FT /product="mitochondrially encoded ATP synthase 6 (MT-ATP6) FT pseudogene" FT /note="match: proteins: Sw:O78752 Sw:P00850 Sw:P12696 FT Sw:P15995 Sw:P21535 Sw:P26853 Sw:Q37385 Tr:Q8LWS4 Tr:Q8M0L5 FT Tr:Q9MEI5 Tr:Q9MEV5 Tr:Q9MJB1 Tr:Q9XKZ6" FT CDS 5100236..5101009 FT /pseudo FT /locus_tag="RP11-39K24.13-001" FT /product="mitochondrially encoded cytochrome c oxidase III FT (MT-CO3) pseudogene" FT /note="match: proteins: Sw:O47693 Sw:O47695 Sw:O47698 FT Sw:O47699 Sw:O47701 Sw:O47710 Sw:P14574 Sw:P14853 Sw:P15953 FT Sw:P92514 Sw:Q03227 Sw:Q8LX26 Sw:Q95707 Tr:Q8LX59 Tr:Q8WCY1 FT Tr:Q94YC7 Tr:Q953I8 Tr:Q9MF54 Tr:Q9TA23" FT CDS 5107937..5109290 FT /pseudo FT /locus_tag="RP11-39K24.8-001" FT /product="mitochondrially encoded NADH dehydrogenase 4 FT (MT-ND4)pseudogene" FT /note="match: proteins: Sw:P03905 Sw:P03910 Sw:P92698 FT Sw:Q00506 Sw:Q9T9W6 Tr:O21702 Tr:O21718 Tr:O63665 Tr:Q94P72 FT Tr:Q94PH0 Tr:Q953J8 Tr:Q9B1S7 Tr:Q9B300 Tr:Q9GBX7 Tr:Q9MEI1 FT Tr:Q9T4X5" FT CDS 5109496..5110762 FT /pseudo FT /locus_tag="RP11-39K24.15-001" FT /product="pseudogene similar to part of NADH dehydrogenase FT 5 MTND5" FT /note="match: proteins: Sw:O79556 Sw:P24978 Sw:P41299 FT Sw:P41309 Sw:P50366 Tr:Q8LWR9 Tr:Q94SF8 Tr:Q94ST8 Tr:Q94SW4 FT Tr:Q952R6 Tr:Q958Z0 Tr:Q9B105 Tr:Q9B1M0 Tr:Q9B2F9 Tr:Q9MES6 FT Tr:Q9XN23" FT CDS 5110913..5112842 FT /pseudo FT /locus_tag="RP11-39K24.7-001" FT /product="transcription factor 3 (E2A immunoglobulin FT enhancer binding factors E12/E47) (TCF3) pseudogene" FT /note="match: proteins: Sw:P15806 Sw:P15923 Sw:P98180 FT Sw:Q01978" FT CDS 5113549..5114804 FT /pseudo FT /locus_tag="RP11-39K24.16-001" FT /product="immunoglobulin heavy constant epsilon P2" FT /note="match: proteins: Sw:P01854.1 Sw:P01855.1 FT Sw:P06336.2" FT mRNA join(5125965..5126446,5126684..5126974) FT /gene="JAK2" FT /locus_tag="RP11-39K24.3-004" FT /product="Janus kinase 2 (a protein tyrosine kinase)" FT /note="match: ESTs: Em:AV729875.1" FT polyA_signal 5128156..5128161 FT polyA_site 5128183 FT polyA_site complement(5163863) FT polyA_signal complement(5163883..5163888) FT mRNA complement(join(5131979..5132141,5132806..5132844, FT 5133425..5133592,5164179..5164251)) FT /locus_tag="RP11-39K24.10-001" FT /product="novel transcript" FT /note="match: ESTs: Em:AI553950.1 Em:AW663052.1" FT mRNA join(AL158147.17:155378..155518,AL158147.17:156285..156367, FT 5021963..>5022065) FT /gene="JAK2" FT /locus_tag="RP11-39K24.3-002" FT /product="Janus kinase 2 (a protein tyrosine kinase)" FT /note="match: ESTs: Em:AL589569.1" FT mRNA join(AL158147.17:155590..155975,AL158147.17:156285..156367, FT 5021963..5022213,5029783..5029906,5044403..5044520, FT 5050686..5050831,5054563..5054884,5055669..5055788, FT 5064883..5065040,5066678..5066789,5069022..5069208, FT 5069925..5070052,5072492..5072626,5073698..5073785, FT 5077453..5077580,5078306..5078444,5080229..5080380, FT 5080533..5080683,5081725..5081861,5089674..5089863, FT 5090446..5090570,5090739..5090911,5123004..5123121, FT 5126333..5126446,5126684..5128183) FT /gene="JAK2" FT /locus_tag="RP11-39K24.3-001" FT /product="Janus kinase 2 (a protein tyrosine kinase)" FT /note="match: ESTs: Em:AA023398.1 Em:AA111135.1 FT Em:AA259122.1 Em:AA445725.1 Em:AA453345.1 Em:AA464860.1 FT Em:AI367869.1 Em:AL700201.1 Em:AU134500.1 Em:AU155461.1 FT Em:BB534849.2 Em:BB712091.1 Em:BE242174.1 Em:BE242517.1 FT Em:BF367544.1 Em:BF846255.1 Em:BG870416.1 Em:BI687358.1 FT Em:BI734179.1 Em:BI991437.1 Em:BM145230.1 Em:BM146583.1 FT Em:BM147640.1 Em:BM150680.1 Em:BM193228.1 Em:BM193847.1 FT Em:BM905676.1 Em:BM964423.1 Em:BQ130120.1 Em:BQ130370.1 FT Em:BQ899824.1" FT /note="match: cDNAs: Em:AB006011.1 Em:AB036336.1 FT Em:AB036337.1 Em:AF001362.1 Em:AF005216.1 Em:AF058925.1 FT Em:L16956.1 Em:U13396.1" FT mRNA complement(join(5163863..5164265,5185314..5185668)) FT /gene="INSL6" FT /locus_tag="RP11-39K24.6-001" FT /product="insulin-like 6" FT /note="match: ESTs: Em:AI215096.1 Em:AI743479.1 FT Em:AW117587.1 Em:AW183490.1 Em:AW188252.1 Em:AW628986.1 FT Em:BQ429291.1 Em:BX103932.1 Em:T19007.1" FT /note="match: cDNAs: Em:AF135824.1 Em:AF156094.1" FT CDS complement(join(5163913..5164265,5185314..5185602)) FT /gene="INSL6" FT /locus_tag="RP11-39K24.6-001" FT /standard_name="OTTHUMP00000021023" FT /product="insulin-like 6" FT /note="match: proteins: Sw:Q9Y581" FT /protein_id="CAD13336.1" FT /translation="MPRLLRLSLLWLGLLLVRFSRELSDISSARKLCGRYLVKEIEKLC FT GHANWSQFRFEEETPFSRLIAQASEKVEAYSPYQFESPQTASPARGRGTNPVSTSWEEA FT VNSWEMQSLPEYKDKKGYSPLGKTREFSSSHNINVYIHENAKFQKKRRNKIKTLSNLFW FT GHHPQRKRRGYSEKCCLTGCTKEELSIACLPYIDFKRLKEKRSSLVTKIY" FT misc_feature 5189656 FT /note="Clone_left_end: RP11-140C18" FT misc_feature 5189856..5298020 FT /note="annotated region of clone" FT misc_feature 5191808 FT /note="Clone_right_end: RP11-39K24" FT CDS complement(5193339..5193558) FT /pseudo FT /locus_tag="RP11-140C18.2-001" FT /product="insulin-like 4 (placenta) (INSL4) pseudogene" FT /note="match: proteins: Sw:Q14641" FT mRNA join(5231419..5231719,5233654..5235304) FT /gene="INSL4" FT /locus_tag="RP11-140C18.3-001" FT /product="insulin-like 4 (placenta)" FT /note="match: ESTs: Em:AA442679.1 Em:AA777897.1 FT Em:AI088100.1 Em:AI128289.1 Em:AI148843.1 Em:AI800597.1 FT Em:BG623890.1 Em:BQ004108.1 Em:BQ011259.1 Em:R15708.1" FT /note="match: cDNAs: Em:BC026254.1 Em:CR601901.1 FT Em:L34838.1" FT CDS join(5231524..5231719,5233654..5233877) FT /gene="INSL4" FT /locus_tag="RP11-140C18.3-001" FT /standard_name="OTTHUMP00000021025" FT /product="insulin-like 4 (placenta)" FT /note="match: proteins: Sw:Q14641" FT /protein_id="CAH70506.1" FT /translation="MASLFRSYLPAIWLLLSQLLRESLAAELRGCGPRFGKHLLSYCPM FT PEKTFTTTPGGWLLESGRPKEMVSTSNNKDGQALGTTSEFIPNLSPELKKPLSEGQPSL FT KKIILSRKKRSGRHRFDPFCCEVICDDGTSVKLCT" FT polyA_signal 5233949..5233954 FT polyA_site 5233967 FT misc_feature 5297821 FT /note="Clone_left_end: RP11-12D24" FT misc_feature 5298021..5454512 FT /note="annotated region of clone" FT polyA_site complement(5299868) FT polyA_signal complement(5299886..5299891) FT mRNA complement(join(5299868..5300444,5304370..5304969)) FT /gene="RLN2" FT /locus_tag="RP11-12D24.2-001" FT /product="relaxin 2" FT /note="match: ESTs: Em:BF513584.1 Em:BF681442.1 FT Em:BF681457.1" FT /note="match: cDNAs: Em:A06925.1 Em:A17315.1 Em:E00219.1 FT Em:X00948.1" FT CDS complement(join(5300098..5300444,5304370..5304580)) FT /gene="RLN2" FT /locus_tag="RP11-12D24.2-001" FT /standard_name="OTTHUMP00000021027" FT /product="relaxin 2" FT /note="match: proteins: Sw:P01347 Sw:P01348 Sw:P04090 FT Sw:P47932 Sw:P51456" FT /protein_id="CAC04177.1" FT /translation="MPRLFFFHLLGVCLLLNQFSRAVADSWMEEVIKLCGRELVRAQIA FT ICGMSTWSKRSLSQEDAPQTPRPVAEIVPSFINKDTETINMMSEFVANLPQELKLTLSE FT MQPALPQLQQHVPVLKDSSLLFEEFKKLIRNRQSEAADSSPSELKYLGLDTHSRKKRQL FT YSALANKCCHVGCTKRSLARFC" FT mRNA complement(join(5299876..5300444,5304096..5304196, FT 5304370..>5304432)) FT /gene="RLN2" FT /locus_tag="RP11-12D24.2-002" FT /product="relaxin 2" FT /note="match: cDNAs: Em:S83209.1" FT /note="match: ESTs: Em:AA935560.1 Em:BX094853.1" FT CDS complement(join(5300403..5300444,5304096..5304196, FT 5304370..>5304432)) FT /codon_start=3 FT /gene="RLN2" FT /locus_tag="RP11-12D24.2-002" FT /standard_name="OTTHUMP00000196912" FT /product="relaxin 2" FT /protein_id="CAO03586.1" FT /translation="TWSKRSLSQEDAPQTPRPVAGDFIQTVSLGISPDGGKALRTGSCF FT TREFLGALSKLCHPSSTKIQKP" FT CDS 5311444..5311711 FT /pseudo FT /locus_tag="RP11-12D24.3-001" FT /product="high-mobility group nucleosomal binding domain 2 FT (HMGN2) pseudogene" FT /note="match: proteins: Sw:P02313 Sw:P02314 Sw:P05204 FT Sw:P09602 Sw:P18437 Sw:P80272 Sw:Q711A6 Tr:Q9I987" FT CDS 5312026..5312269 FT /pseudo FT /locus_tag="RP11-12D24.8-001" FT /product="novel pseudogene" FT /note="match: proteins: Sw:P05204" FT polyA_site complement(5334969) FT polyA_signal complement(5334983..5334988) FT mRNA complement(join(5334969..5335597,5339536..5339873)) FT /gene="RLN1" FT /locus_tag="RP11-12D24.1-001" FT /product="relaxin 1" FT /note="match: ESTs: Em:AI089170.1 Em:BF681442.1 FT Em:BF681457.1 Em:BG195391.1" FT /note="match: cDNAs: Em:A06846.1 Em:A06925.1 Em:A06926.1 FT Em:A17315.1 Em:A17317.1 Em:A17329.1 Em:BC005956.1 FT Em:E00193.1 Em:E00219.1 Em:X00948.1 Em:X00949.1" FT CDS complement(join(5335251..5335597,5339536..5339746)) FT /gene="RLN1" FT /locus_tag="RP11-12D24.1-001" FT /standard_name="OTTHUMP00000021026" FT /product="relaxin 1" FT /note="match: proteins: Sw:P04808 Sw:P51454" FT /protein_id="CAC04179.1" FT /translation="MPRLFLFHLLEFCLLLNQFSRAVAAKWKDDVIKLCGRELVRAQIA FT ICGMSTWSKRSLSQEDAPQTPRPVAEIVPSFINKDTETIIIMLEFIANLPPELKAALSE FT RQPSLPELQQYVPALKDSNLSFEEFKKLIRNRQSEAADSNPSELKYLGLDTHSQKKRRP FT YVALFEKCCLIGCTKRSLAKYC" FT mRNA complement(join(5334969..5335597,5339261..5339382, FT 5339536..5339625)) FT /gene="RLN1" FT /locus_tag="RP11-12D24.1-002" FT /product="relaxin 1" FT /note="match: ESTs: Em:AA210817.1" FT /note="match: cDNAs: Em:S83209.1" FT CDS complement(5356312..5356525) FT /pseudo FT /locus_tag="RP11-12D24.6-001" FT /product="novel pseudogene" FT /note="match: proteins: Tr:Q9N072" FT polyA_site complement(5357973) FT polyA_signal complement(5357990..5357995) FT misc_feature 5365337 FT /note="Clone_right_end: RP11-140C18" FT CDS complement(5418373..5418976) FT /pseudo FT /locus_tag="RP11-12D24.7-001" FT /product="novel pseudogene" FT /note="match: proteins: Sw:Q8N8N0" FT CDS complement(join(5358239..5358360,5361078..5361187, FT 5361758..5361888,5431897..5431977)) FT /gene="C9orf46" FT /locus_tag="RP11-12D24.9-001" FT /standard_name="OTTHUMP00000021028" FT /product="chromosome 9 open reading frame 46" FT /note="match: proteins: Sw:Q9D3P8 Sw:Q9HBL7" FT /protein_id="CAH70364.1" FT /translation="MGFIFSKSMNESMKNQKEFMLMNARLQLERQLIMQSEMRERQMAM FT QIAWSREFLKYFGTFFGLAAISLTAGAIKKKKPAFLVPIVPLSFILTYQYDLGYGTLLE FT RMKGEAEDILETEKSKLQLPRGMITFESIEKARKEQSRFFIDK" FT mRNA complement(join(5392333..5392649,5431897..5431983, FT 5436569..5436694)) FT /gene="C9orf46" FT /locus_tag="RP11-12D24.9-002" FT /product="chromosome 9 open reading frame 46" FT /note="match: ESTs: Em:AW592256.1" FT misc_feature 5437172 FT /note="Clone_left_end: RP11-574F11" FT mRNA complement(join(5361781..5361888,5431897..5431983, FT 5436569..5436694,5437632..5437706)) FT /gene="C9orf46" FT /locus_tag="RP11-12D24.9-004" FT /product="chromosome 9 open reading frame 46" FT /note="match: ESTs: Em:BQ631590.1" FT mRNA complement(join(5357973..5358360,5361078..5361187, FT 5361758..5361888,5431897..5431983,5436569..5436694, FT 5437789..5437878)) FT /gene="C9orf46" FT /locus_tag="RP11-12D24.9-001" FT /product="chromosome 9 open reading frame 46" FT /note="match: ESTs: Em:AA456524.1 Em:AI017918.1 FT Em:AI357582.1 Em:AI627793.1 Em:AI741646.1 Em:BG190739.1 FT Em:BG195050.1 Em:BG221256.1 Em:BM693747.1 Em:BQ216144.1 FT Em:BQ231154.1 Em:BQ631314.1 Em:BQ723556.1 Em:BU738188.1 FT Em:CA306245.1 Em:CA307417.1 Em:N90331.1" FT /note="match: cDNAs: Em:AF220050.1 Em:AF225420.1 FT Em:AK027594.1 Em:BC008212.1" FT mRNA complement(join(5361758..5361888,5381863..5382031, FT 5431897..5431983,5436569..5436694,5437789..5437867)) FT /gene="C9orf46" FT /locus_tag="RP11-12D24.9-003" FT /product="chromosome 9 open reading frame 46" FT /note="match: ESTs: Em:BG705798.1" FT mRNA join(5450525..5450596,AL162253.17:1688..1753, FT AL162253.17:2667..3008,AL162253.17:8422..8709, FT AL162253.17:11087..11194,AL162253.17:12358..12417, FT AL162253.17:13428..16135) FT /gene="CD274" FT /locus_tag="RP11-574F11.1-001" FT /product="CD274 molecule" FT /note="match: ESTs: Em:AI275846.1 Em:AI424335.1 FT Em:AI690414.1 Em:AI819376.1 Em:AU136409.1 Em:AU137240.1 FT Em:BE874013.1 Em:BG538935.1 Em:BG573785.1 Em:BM999646.1 FT Em:BU621474.1 Em:BU751819.1 Em:BX327279.2 Em:BX337038.2 FT Em:BX381605.1 Em:BX399016.2 Em:H62437.1" FT /note="match: cDNAs: Em:AF177937.1 Em:AF233516.1 FT Em:AF233517.1 Em:AF317088.1 Em:AK001894.1" FT misc_feature 5454412 FT /note="Clone_right_end: RP11-12D24" FT misc_feature 5454513..5600739 FT /note="annotated region of clone" FT CDS join(5456114..5456165,5457079..5457420,5462834..5463121, FT 5465499..5465606,5466770..5466829,5467840..5467862) FT /gene="CD274" FT /locus_tag="RP11-574F11.1-001" FT /standard_name="OTTHUMP00000021029" FT /product="CD274 molecule" FT /note="match: proteins: Sw:Q9EP73 Sw:Q9NZQ7" FT /protein_id="CAI15983.1" FT /translation="MRIFAVFIFMTYWHLLNAFTVTVPKDLYVVEYGSNMTIECKFPVE FT KQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV FT KLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKA FT EVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTA FT ELVIPELPLAHPPNERTHLVILGAILLCLGVALTFIFRLRKGRMMDVKKCGIQDTNSKK FT QSDTHLEET" FT mRNA join(5456114..5456165,5457079..5457420,5462834..5462968, FT 5463075..5463121,5465499..5465539,5466770..5466829, FT 5467840..5467866) FT /gene="CD274" FT /locus_tag="RP11-574F11.1-004" FT /product="CD274 molecule" FT /note="match: cDNAs: Em:AY714881.1" FT mRNA join(5457384..5457420,5462834..5463238) FT /gene="CD274" FT /locus_tag="RP11-574F11.1-003" FT /product="CD274 molecule" FT /note="match: ESTs: Em:AA399416.1" FT mRNA join(5462935..5463121,5465499..5465912) FT /gene="CD274" FT /locus_tag="RP11-574F11.1-002" FT /product="CD274 molecule" FT /note="match: ESTs: Em:BQ331712.1 Em:BQ332046.1" FT polyA_signal 5470529..5470534 FT polyA_site 5470547 FT mRNA join(5510570..5510803,5522533..5522601,5534745..5535050, FT 5549335..5549604,5557618..5557752,5563162..5563211, FT 5569954..5571252) FT /gene="PDCD1LG2" FT /locus_tag="RP11-574F11.2-001" FT /product="programmed cell death 1 ligand 2" FT /note="match: ESTs: Em:AI798762.1 Em:AI990290.1 FT Em:AU135908.1 Em:AW105205.1 Em:AW449368.1 Em:BU608319.1" FT /note="match: cDNAs: Em:AF142780.2 Em:AF329193.1 FT Em:AF344424.1" FT misc_feature 5517260 FT /note="Clone_left_end: RP11-635N21" FT CDS join(5522547..5522601,5534745..5535050,5549335..5549604, FT 5557618..5557752,5563162..5563211,5569954..5569959) FT /gene="PDCD1LG2" FT /locus_tag="RP11-574F11.2-001" FT /standard_name="OTTHUMP00000021030" FT /product="programmed cell death 1 ligand 2" FT /note="match: proteins: Sw:Q9BQ51" FT /protein_id="CAI15984.1" FT /translation="MIFLLLMLSLELQLHQIAALFTVTVPKELYIIEHGSNVTLECNFD FT TGSHVNLGAITASLQKVENDTSPHRERATLLEEQLPLGKASFHIPQVQVRDEGQYQCII FT IYGVAWDYKYLTLKVKASYRKINTHILKVPETDEVELTCQATGYPLAEVSWPNVSVPAN FT TSHSRTPEGLYQVTSVLRLKPPPGRNFSCVFWNTHVRELTLASIDLQSQMEPRTHPTWL FT LHIFIPFCIIAFIFIATVIALRKQLCQKLYSSKDTTKRPVTTTKREVNSAI" FT misc_feature 5538616..5538618 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 5538616..5538917 FT /note="Sequence from overlapping clone bA635N21 (AL354744). FT Assembly confirmed by restriction digest data" FT polyA_signal 5571229..5571234 FT polyA_site 5571254 FT mRNA join(5584490..5584845,5588593..5588994) FT /locus_tag="RP11-574F11.3-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BG433207.1" FT misc_feature 5600639 FT /note="Clone_right_end: RP11-574F11" FT mRNA join(AL135786.17:152605..152676,5456100..5456165, FT 5457079..5457420,5462834..5463121,5465499..5465606, FT 5466770..5466829,5467840..5470547) FT /gene="CD274" FT /locus_tag="RP11-574F11.1-001" FT /product="CD274 molecule" FT /note="match: ESTs: Em:AI275846.1 Em:AI424335.1 FT Em:AI690414.1 Em:AI819376.1 Em:AU136409.1 Em:AU137240.1 FT Em:BE874013.1 Em:BG538935.1 Em:BG573785.1 Em:BM999646.1 FT Em:BU621474.1 Em:BU751819.1 Em:BX327279.2 Em:BX337038.2 FT Em:BX381605.1 Em:BX399016.2 Em:H62437.1" FT /note="match: cDNAs: Em:AF177937.1 Em:AF233516.1 FT Em:AF233517.1 Em:AF317088.1 Em:AK001894.1" FT misc_feature 5600740..5649598 FT /note="annotated region of clone" FT mRNA join(5629120..5629453,AL136980.5:7085..7192, FT AL136980.5:40461..40540,AL136980.5:64398..64505, FT AL136980.5:70684..70826,AL136980.5:71119..71252, FT AL136980.5:82890..82981,AL136980.5:88952..89040, FT AL136980.5:93371..93515,AL136980.5:94191..94239, FT AL136980.5:96433..96585,AL136980.5:97804..98007, FT AL136980.5:103702..103740,AL136980.5:104038..104148, FT AL136980.5:105343..105432,AL136980.5:106714..106874, FT AL136980.5:107815..107953,AL136980.5:113043..113162, FT AL136980.5:113642..114370,AL136980.5:115916..116074, FT AL136980.5:116164..116300,AL136980.5:119472..119956) FT /gene="KIAA1432" FT /locus_tag="RP11-207C16.5-001" FT /product="KIAA1432" FT /note="match: cDNAs: Em:AK022642.1 Em:AL136875.1" FT /note="match: ESTs: Em:AA319684.1 Em:AU125152.1 FT Em:AW502347.1 Em:BB633248.1 Em:BB649136.1 Em:BE000808.1 FT Em:BE000857.1 Em:BF983693.1 Em:BG106799.1 Em:BQ362101.1 FT Em:BU195285.1" FT misc_feature 5649399 FT /note="Clone_left_end: RP11-207C16" FT misc_feature 5649599..5819060 FT /note="annotated region of clone" FT CDS join(5656676..5656690,5689959..5690038,5713896..5714003, FT 5720182..5720324,5720617..5720750,5732388..5732479, FT 5738450..5738538,5742869..5743013,5743689..5743737, FT 5745931..5746083,5747302..5747505,5753200..5753238, FT 5753536..5753646,5754841..5754930,5756212..5756372, FT 5757313..5757451,5762541..5762660,5763140..5763868, FT 5765414..5765572,5765662..5765798,5768970..5769330) FT /gene="KIAA1432" FT /locus_tag="RP11-207C16.5-001" FT /standard_name="OTTHUMP00000021031" FT /product="KIAA1432" FT /note="match: proteins: Tr:Q9H0A5 Tr:Q9H9S1" FT /protein_id="CAI95003.1" FT /translation="MIAVSTANGYILFFHITSTRGDKYLYEPVYPKGSPQMKGTPHFKE FT EQCAPALNLEMRKILDLQAPIMSLQSVLEDLLVATSDGLLHLIHWEGMTNGRKAINLCT FT VPFSVDLQSSRGSFLGFTDVHIRDMEYCATLDGFAVVFNDGKVGFITPVSSRFTAEQLH FT GVWPQDVVDGTCVAVNNKYRLMAFGCVSGSVQVYTIDNSTGAMLLSHKLELTAKQYPDI FT WNKTGAVKLMRWSPDNSVVIVTWEYGGLSLWSVFGAQLICTLGGDFAYRSDGTKKDPLK FT INSMSWGAEGYHLWVISGFGSQNTEIESDLRSVVKQPSILLFQFIKSVLTVNPCMSNQE FT QVLLQGEDRLYLNCGEASQTQNPRSSSTHSEHKPSREKSPFADGGLESQGLSTLLGHRH FT WHVVQISSTYLESNWPIRFSAIDKLGQNIAVVGKFGFAHYSLLTKKWKLFGNITQEQNM FT IVTGGLAWWNDFMVLACYNINDRQEELRVYLRTSNLDNAFAHVTKAQAETLLLSVFQDM FT VIVFRADCSICLYSIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENG FT ITLKMPQQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQ FT SVENVWTTCRANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHI FT NIYPLAVLFEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILR FT QLLVRNLGEQALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFIT FT EFPLFLQTVVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEV FT PAVSRQHATLLFNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEF FT FRNRSISLSQSAENVPASKFSLQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARR FT LLEDVRLKDLGCFAAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPAS FT SISSPFKNGKYRTGNVDFMSLVQGELYFTPCIYTFCY" FT mRNA complement(join(5787035..5787308,5787430..5787593, FT 5797817..5797932,5798806..5799008,5801176..5801328, FT 5805611..5805785,5810011..5810231,5811111..5811323, FT 5812125..5812217,5812889..5813035,AL365360.9:4936..5041, FT AL365360.9:6132..6259,AL365360.9:11767..12068, FT AL365360.9:13494..13997)) FT /gene="ERMP1" FT /locus_tag="RP11-207C16.6-002" FT /product="endoplasmic reticulum metallopeptidase 1" FT /note="match: ESTs: Em:BI560130.1" FT /note="match: cDNAs: Em:AK093217.1" FT mRNA complement(join(5784571..5787308,5787430..5787593, FT 5797817..5797932,5798806..5799008,5801176..5801328, FT 5805027..5805217,5805611..5805785,5810011..5810231, FT 5811111..5811323,5812125..5812217,5812889..5813035, FT AL365360.9:4936..5041,AL365360.9:11767..12068, FT AL365360.9:13730..13881)) FT /gene="ERMP1" FT /locus_tag="RP11-207C16.6-001" FT /product="endoplasmic reticulum metallopeptidase 1" FT /note="match: ESTs: Em:AA155877.1 Em:AA156360.1 FT Em:AA233223.1 Em:AA282319.1 Em:AA286781.1 Em:AA337561.1 FT Em:AA406266.1 Em:AA463342.1 Em:AA492360.1 Em:AA716505.1 FT Em:AA716936.1 Em:AA809300.1 Em:AA913312.1 Em:AI126284.1 FT Em:AI219197.1 Em:AI262175.1 Em:AI262819.1 Em:AI263800.1 FT Em:AI276006.1 Em:AI276018.1 Em:AI334153.1 Em:AI367140.1 FT Em:AI379518.1 Em:AI582627.1 Em:AI671615.1 Em:AI762891.1 FT Em:AI765377.1 Em:AI798697.1 Em:AI811814.1 Em:AI870465.1 FT Em:AL834191.1 Em:AW025166.1 Em:AW194715.1 Em:AW195049.1 FT Em:AW385504.1 Em:AW390245.1 Em:AW402821.1 Em:AW426446.1 FT Em:AW578425.1 Em:AW590408.1 Em:AW604360.1 Em:BF332330.1 FT Em:BQ650310.1 Em:H24132.1 Em:N92627.1 Em:W19943.1 FT Em:W31763.1 Em:W39139.1" FT /note="match: cDNAs: Em:AB058718.1 Em:AK026962.1 FT Em:AL834191.1 Em:BC031519.1 Em:BC031630.1" FT mRNA join(AL354744.13:28481..28814,5656583..5656690, FT 5689959..5690038,5713896..5714003,5720182..5720324, FT 5720617..5720750,5732388..5732479,5738450..5738538, FT 5742869..5743013,5743689..5743737,5745931..5746083, FT 5747302..5747505,5753200..5753238,5753536..5753646, FT 5754841..5754930,5756212..5756372,5757313..5757451, FT 5762541..5762660,5763140..5763868,5765414..5765572, FT 5765662..5765798,5768970..5769454) FT /gene="KIAA1432" FT /locus_tag="RP11-207C16.5-001" FT /product="KIAA1432" FT /note="match: ESTs: Em:AA319684.1 Em:AU125152.1 FT Em:AW502347.1 Em:BB633248.1 Em:BB649136.1 Em:BE000808.1 FT Em:BE000857.1 Em:BF983693.1 Em:BG106799.1 Em:BQ362101.1 FT Em:BU195285.1" FT /note="match: cDNAs: Em:AK022642.1 Em:AL136875.1" FT misc_feature 5702141 FT /note="Clone_right_end: RP11-635N21" FT mRNA complement(join(5719021..5719498,5720180..5720244)) FT /locus_tag="RP11-207C16.4-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BF431596.1" FT mRNA join(5757341..5757451,5762541..5762660,5763140..5763868, FT 5765414..5765572,5765662..5765798,5768970..5769256, FT 5770087..5770278,5772564..5772741,5772892..5773080, FT 5773958..5776555) FT /gene="KIAA1432" FT /locus_tag="RP11-207C16.5-002" FT /product="KIAA1432" FT /note="match: ESTs: Em:AA250978.1 Em:AI435414.1 FT Em:AI632993.1 Em:AI652998.1 Em:AI653686.1 Em:AI741031.1 FT Em:AI936351.1 Em:AI936361.1 Em:AI952848.1 Em:AW167053.1 FT Em:AW408558.1 Em:AW665297.1 Em:AW966938.1 Em:AW966942.1 FT Em:AW967556.1 Em:BE244222.1 Em:BF111630.1 Em:BF214774.1 FT Em:BF305798.1 Em:BF592989.1 Em:BG827452.1 Em:BM091291.1 FT Em:BM467828.1 Em:BM699553.1 Em:BQ008932.1 Em:BQ024317.1 FT Em:BQ286783.1 Em:BQ723758.1 Em:BU431177.1 Em:BU599705.1 FT Em:N57120.1" FT /note="match: cDNAs: Em:AB037853.2 Em:AK074150.1 FT Em:BC023535.1 Em:BC030576.1 Em:BC036137.1" FT CDS join(5757356..5757451,5762541..5762660,5763140..5763868, FT 5765414..5765572,5765662..5765798,5768970..5769256, FT 5770087..5770278,5772564..5772741,5772892..5773080, FT 5773958..5774246) FT /gene="KIAA1432" FT /locus_tag="RP11-207C16.5-002" FT /standard_name="OTTHUMP00000021032" FT /product="KIAA1432" FT /note="match: proteins: Tr:Q76MT5 Tr:Q8N6E0 Tr:Q8TEH4" FT /protein_id="CAI95004.1" FT /translation="MSRYIPHPFLVVSVTLTSVSTENGITLKMPQQARGAESIMLNLAG FT QLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWTTCRANKQKRHLLEA FT LWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVLFEDALVLGAVNDT FT LLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGEQALLLAQSCATL FT PYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVVHCARKTEYALW FT NYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTALEQGKW FT DLCRHMIRFLKAIGSGESETPPSTPTAQEPSSSGGFEFFRNRSISLSQSAENVPASKFS FT LQKTLSMPSGPSGKRWSKDSDCAENMYIDMMLWRHARRLLEDVRLKDLGCFAAQLGFEL FT ISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTVGEQLLKS FT QSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPLSNKGDE FT CSIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQVQLRYL FT LHIFMEAGCLDWCIVIGLILRESSIINQILVITQSSEVDGEMLQNIKTGLHAVDRWAST FT DCPGYKPFLNIIKPQLQKLSEITEEQVQPDAFQPITMGKTPEQTSPRAEESRGSSSHGS FT IPQGEVGSSNMVSRKEEDTAQAEEEEPFQDGTYDCSVS" FT polyA_signal 5769430..5769435 FT polyA_site 5769454 FT polyA_signal 5776037..5776042 FT polyA_site 5776061 FT polyA_signal 5776539..5776544 FT polyA_site 5776557 FT polyA_site complement(5784572) FT polyA_signal complement(5784584..5784589) FT CDS complement(join(5787144..5787308,5787430..5787593, FT 5797817..5797932,5798806..5799008,5801176..5801328, FT 5805027..5805217,5805611..5805785,5810011..5810231, FT 5811111..5811279)) FT /gene="ERMP1" FT /locus_tag="RP11-207C16.6-001" FT /standard_name="OTTHUMP00000021034" FT /product="endoplasmic reticulum metallopeptidase 1" FT /note="match: proteins: Tr:Q8K2F9 Tr:Q8N5T5 Tr:Q9H5M1" FT /protein_id="CAI95005.1" FT /translation="MLAAASKYRHGNMVFFDVLGLFVIAYPSRIGSIINYMVVMGVVLY FT LGKKFLQPKHKTGNYKKDFLCGLGITLISWFTSLVTVLIIAVFISLIGQSLSWYNHFYV FT SVCLYGTATVAKIILIHTLAKRFYYMNASAQYLGEVFFDISLFVHCCFLVTLTYQGLCS FT AFISAVWVAFPLLTKLCVHKDFKQHGAQGKFIAFYLLGMFIPYLYALYLIWAVFEMFTP FT ILGRSGSEIPPDVVLASILAGCTMILSSYFINFIYLAKSTKKTMLTLTLVCAITFLLVC FT SGTFFPYSSNPANPKPKRVFLQHMTRTFHDLEGNAVKRDSGIWINGFDYTGISHITPHI FT PEINDSIRAHCEENAPLCGFPWYLPVHFLIRKNWYLPAPEVSPRNPPHFRLISKEQTPW FT DSIKLTFEATGPSHMSFYVRAHKGSTLSQWSLGNGTPVTSKGGDYFVFYSHGLQASAWQ FT FWIEVQVSEEHPEGMVTVAIAAHYLSGEDKRSPQLDALKEKFPDWTFPSAWVCTYDLFV FT F" FT misc_feature 5818960 FT /note="Clone_right_end: RP11-207C16" FT misc_feature 5819061..5975983 FT /note="annotated region of clone" FT mRNA complement(join(5968158..5969436,AL353606.12:14362..14562, FT AL162384.14:3518..4059)) FT /locus_tag="RP11-546N22.5-001" FT /product="novel transcript" FT /note="match: ESTs: Em:AI004775.1 Em:AI760849.1 FT Em:AW370897.1 Em:AW449596.1 Em:AW629298.1 Em:AW889233.1 FT Em:BE702595.1 Em:BE702599.1 Em:BF514001.1 Em:BF514858.1 FT Em:BI079752.1 Em:BQ376550.1" FT /note="match: cDNAs: Em:BC023491.1" FT mRNA complement(join(AL136980.5:137537..137810, FT AL136980.5:137932..138095,AL136980.5:148319..148434, FT AL136980.5:149308..149510,AL136980.5:151678..151830, FT AL136980.5:156113..156287,AL136980.5:160513..160733, FT AL136980.5:161613..161825,AL136980.5:162627..162719, FT AL136980.5:163391..163537,5823896..5824001, FT 5825092..5825219,5830727..5831028,5832454..5832957)) FT /gene="ERMP1" FT /locus_tag="RP11-207C16.6-002" FT /product="endoplasmic reticulum metallopeptidase 1" FT /note="match: ESTs: Em:BI560130.1" FT /note="match: cDNAs: Em:AK093217.1" FT mRNA complement(join(5825137..5825219,5830727..5831028, FT 5832690..5833312)) FT /gene="ERMP1" FT /locus_tag="RP11-207C16.6-003" FT /product="endoplasmic reticulum metallopeptidase 1" FT /note="match: ESTs: Em:AI025122.1 Em:AI034327.1 FT Em:AI042330.1 Em:AI057520.1 Em:AI452790.1 Em:AW300416.1" FT mRNA complement(join(AL136980.5:135073..137810, FT AL136980.5:137932..138095,AL136980.5:148319..148434, FT AL136980.5:149308..149510,AL136980.5:151678..151830, FT AL136980.5:155529..155719,AL136980.5:156113..156287, FT AL136980.5:160513..160733,AL136980.5:161613..161825, FT AL136980.5:162627..162719,AL136980.5:163391..163537, FT 5823896..5824001,5830727..5831028,5832690..5832841)) FT /gene="ERMP1" FT /locus_tag="RP11-207C16.6-001" FT /product="endoplasmic reticulum metallopeptidase 1" FT /note="match: ESTs: Em:AA155877.1 Em:AA156360.1 FT Em:AA233223.1 Em:AA282319.1 Em:AA286781.1 Em:AA337561.1 FT Em:AA406266.1 Em:AA463342.1 Em:AA492360.1 Em:AA716505.1 FT Em:AA716936.1 Em:AA809300.1 Em:AA913312.1 Em:AI126284.1 FT Em:AI219197.1 Em:AI262175.1 Em:AI262819.1 Em:AI263800.1 FT Em:AI276006.1 Em:AI276018.1 Em:AI334153.1 Em:AI367140.1 FT Em:AI379518.1 Em:AI582627.1 Em:AI671615.1 Em:AI762891.1 FT Em:AI765377.1 Em:AI798697.1 Em:AI811814.1 Em:AI870465.1 FT Em:AL834191.1 Em:AW025166.1 Em:AW194715.1 Em:AW195049.1 FT Em:AW385504.1 Em:AW390245.1 Em:AW402821.1 Em:AW426446.1 FT Em:AW578425.1 Em:AW590408.1 Em:AW604360.1 Em:BF332330.1 FT Em:BQ650310.1 Em:H24132.1 Em:N92627.1 Em:W19943.1 FT Em:W31763.1 Em:W39139.1" FT /note="match: cDNAs: Em:AB058718.1 Em:AK026962.1 FT Em:AL834191.1 Em:BC031519.1 Em:BC031630.1" FT CDS complement(5855781..5856426) FT /pseudo FT /locus_tag="RP11-546N22.2-001" FT /product="adenylate kinase 3 (AK3) pseudogene" FT /note="match: proteins: Sw:P08760 Sw:P24323 Sw:P27144 FT Sw:P69344 Sw:Q59591 Sw:Q59594 Sw:Q59596 Sw:Q9WUR9 Sw:Q9WUS0 FT Tr:Q9R452" FT misc_feature 5880159..5880240 FT /note="Single clone region. Sequence from reads from a FT short insert library derived from a single pUC clone. FT Restriction digest data confirm the assembly" FT misc_feature 5883309 FT /note="Clone_left_end: RP11-165O14" FT mRNA join(5890802..5890936,5892450..5892551,5897557..5897653, FT 5906885..5906998,5908640..5910606) FT /gene="MLANA" FT /locus_tag="RP11-546N22.1-001" FT /product="melan-A" FT /note="match: ESTs: Em:AI624490.1 Em:AL533466.1 FT Em:AL565131.1 Em:BF691077.1 Em:BF691815.1 Em:BI856088.1 FT Em:BM014085.1 Em:BM450147.1 Em:BM551877.1 Em:BM905215.1 FT Em:BQ066975.1 Em:BQ677630.1 Em:BQ678597.1 Em:BQ894783.1 FT Em:BU155807.1 Em:BU166919.1 Em:BU178468.1 Em:BU600333.1 FT Em:N42705.1" FT /note="match: cDNAs: Em:BC014423.1 Em:U06452.1 Em:U06654.1" FT mRNA join(5890908..5890936,5891055..5891199,5892450..5892551, FT 5897557..5897653,5906885..5906998,5908640..5908943) FT /gene="MLANA" FT /locus_tag="RP11-546N22.1-003" FT /product="melan-A" FT /note="match: ESTs: Em:BQ435119.1" FT mRNA join(5890922..5891302,5892450..5892551,5897557..5897653, FT 5906885..5906998,5908640..5908945) FT /gene="MLANA" FT /locus_tag="RP11-546N22.1-004" FT /product="melan-A" FT /note="match: ESTs: Em:BE385156.1 Em:BE891265.1 FT Em:BE895878.1 Em:BE896634.1 Em:BE897950.1 Em:BM449570.1 FT Em:BM542362.1 Em:BQ212842.1 Em:BQ214402.1 Em:BQ223446.1 FT Em:BU165857.1 Em:BU602431.1" FT CDS join(5892475..5892551,5897557..5897653,5906885..5906998, FT 5908640..5908708) FT /gene="MLANA" FT /locus_tag="RP11-546N22.1-001" FT /standard_name="OTTHUMP00000021036" FT /product="melan-A" FT /note="match: proteins: Sw:Q16655 Sw:Q16655" FT /protein_id="CAI95312.1" FT /translation="MPREDAHFIYGYPKKGHGHSYTTAEEAAGIGILTVILGVLLLIGC FT WYCRRRNGYRALMDKSLHVGTQCALTRRCPQEGFDHRDSKVSLQEKNCEPVVPNAPPAY FT EKLSAEQSPPPYSP" FT mRNA join(5892511..5892551,5897557..5897653,5906885..5907194) FT /gene="MLANA" FT /locus_tag="RP11-546N22.1-002" FT /product="melan-A" FT /note="match: ESTs: Em:AA232639.1 Em:AA497058.1 FT Em:AA497067.1 Em:AA497135.1 Em:AA497143.1" FT mRNA join(5897564..5897653,5898081..5898186,5906885..5907189) FT /gene="MLANA" FT /locus_tag="RP11-546N22.1-005" FT /product="melan-A" FT /note="match: ESTs: Em:AA071342.1" FT mRNA complement(join(5898926..5899255,5910615..5910710)) FT /locus_tag="RP11-546N22.6-002" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AW450313.1" FT polyA_site complement(5919022) FT polyA_signal complement(5919035..5919040) FT mRNA complement(join(5881596..5881675,5910615..5910707, FT 5913858..5914062,5920544..5920655)) FT /locus_tag="RP11-546N22.6-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AA428531.1" FT CDS complement(join(5919684..5923309,5924658..5924845, FT 5929044..5929159,5933751..5933774)) FT /gene="KIAA2026" FT /locus_tag="RP11-546N22.7-001" FT /standard_name="OTTHUMP00000021033" FT /product="KIAA2026" FT /note="match: proteins: Tr:Q9GM48" FT /protein_id="CAI95313.1" FT /translation="MQLFFSCEGKWYHRRQAVKELHSTLIRLLNELLPWEPKLMKAFQR FT NRSRLKKDYDDFRRQPDHDTFNRELWTTDEGEGDLGKDSPKGEISKSIDSTEPLDILEK FT DHFDSDDMKLSEIDFPMARSKLLKKELPSKDLPKTLLKTLKRQSKQTDYVDDSTKELSP FT RKKAKLSTNETTVENLESDVQIDCFSESKHTEPSFPESFASLDSVPVSTLQKGTKPIQA FT LLAKNIGNKVTLTNQLPPSTGRNALAVEKPVLSPPEASPIKPALTCHTNTKGPLQMVYK FT MPCGQWLPIDLQNSSVKIQVQPMVDPKTGEKIMQQVLILPKNFVIQHKEGKAVAKEVPP FT LQQKGTEQHCSSFPQTTNINSSLASVFVNSPGTVSTQLPNTAFNKTITPLSNISSARPQ FT PLSPVTSVSNLLTPSVKTSQSEAGKAKNAVSAATFSLPSASPTISSTGQPLSSTTTLNG FT STNPGSSFNCFAQQTADSSEAKQELKTVCIRDSQSILVRTRGGNTGVVKVQTNPDQNSP FT NTVSSSSVFTFAPQLQAFLVPKSTTSSSAFSPVAGTTTTSSLSPFSQTPTSVSIPASFA FT PSMGKNLKLTLGHTTGSGDLGHVIDKTSHMPSSPLKSSICSSTLLPSTTSSSVSVISIS FT AANFGQNNANIIHTPTKQQQVDYITKSYPVTRSEATAATNGDVISGTPVQKLMLVSAPS FT ILSSGNGTAINMTPALTSTGVSAQKLVFINAPVPSGTSTPTLVAESLKQTLPPPLHKAY FT VKTPEQPQIVLIPSTVGTPIKINSSPAVSQIKDVKIGLNIGQAIVNTSGTVPAIPSINI FT LQNVTPKGEDKSSKGYILPLSTSGNSVPVSSNFVSQNITPVNESVVSSARAVNVLSVTG FT ANLSLGSFPVTSASASAGAQPPVLVSGNDTSSRIMPILSNRLCSSSLGNTVAISTVKTG FT HLASSVLISTTQPVVSPKCLTSALQIPVTVALPTPATTSPKIINTVPHSAAVPGATRSV FT SISKRQSRTSLQFHSPGISTTVPTNVNTNKPQTELSSLSTSPGKITNTSNFASLPNQQA FT LVKTPSYSSAPGGTTIHTASAPSNVTSLVGSQFSEPCIQQKIVINTSTPLAPGTQIMIN FT GTRFIVPPQGLGAGSHVLLISTNPKYGAPLVLNSGQGIQSTPIDNSAQKITLASNNSLS FT GQPLQHPLRSPTKFINSFGNASSIPTVHTSPQLINTTAKVPVPPPVPTVSLTSVIKSPA FT TLLAKTSLVSAICPSNPPLPSSTSVFHLDPPVKKLLVSPEGAILNTINTPASKVSSLSP FT SLSQIVVSASRSPASVFPAFQSSGLEKPDRAAS" FT mRNA complement(join(5919022..5923309,5924658..5924845, FT 5929044..5929159,5933751..5933881,5944871..5944960, FT 5954016..5954095,5968019..5968348)) FT /gene="KIAA2026" FT /locus_tag="RP11-546N22.7-001" FT /product="KIAA2026" FT /note="match: ESTs: Em:AA287088.1 Em:AA830050.1 FT Em:AA937934.1 Em:AI887465.1 Em:AW959408.1 Em:AW996810.1 FT Em:BE536730.1 Em:BF996704.1 Em:BG109896.1 Em:BM992657.1 FT Em:BQ215718.1 Em:BU627587.1 Em:BU686371.1 Em:W27743.1" FT /note="match: cDNAs: Em:AB049838.1 Em:AB095946.1 FT Em:AK091373.1 Em:AL833370.1" FT misc_feature 5975883 FT /note="Clone_right_end: RP11-546N22" FT misc_feature 5975984..6005677 FT /note="annotated region of clone" FT mRNA complement(join(AL365360.9:149198..150476,5988345..5988545, FT AL162384.14:3518..4059)) FT /locus_tag="RP11-546N22.5-001" FT /product="novel transcript" FT /note="match: cDNAs: Em:BC023491.1" FT /note="match: ESTs: Em:AI004775.1 Em:AI760849.1 FT Em:AW370897.1 Em:AW449596.1 Em:AW629298.1 Em:AW889233.1 FT Em:BE702595.1 Em:BE702599.1 Em:BF514001.1 Em:BF514858.1 FT Em:BI079752.1 Em:BQ376550.1" FT misc_feature 6001678 FT /note="Clone_left_end: RP11-218I7" FT misc_feature 6005678..6072142 FT /note="annotated region of clone" FT mRNA complement(join(AL365360.9:149198..150476, FT AL353606.12:14362..14562,6007195..6007736)) FT /locus_tag="RP11-546N22.5-001" FT /product="novel transcript" FT /note="match: cDNAs: Em:BC023491.1" FT /note="match: ESTs: Em:AI004775.1 Em:AI760849.1 FT Em:AW370897.1 Em:AW449596.1 Em:AW629298.1 Em:AW889233.1 FT Em:BE702595.1 Em:BE702599.1 Em:BF514001.1 Em:BF514858.1 FT Em:BI079752.1 Em:BQ376550.1" FT polyA_site complement(6011043) FT mRNA complement(6011043..6015618) FT /gene="RANBP6" FT /locus_tag="RP11-218I7.1-001" FT /product="RAN binding protein 6" FT /note="match: cDNAs: Em:AF039023.1 Em:AF294327.1 FT Em:AK001982.1 Em:AK017701.1 Em:BC001497.1 Em:BC012805.1 FT Em:BC019309.1 Em:BC019838.1 Em:BC020012.1 Em:BC026487.1 FT Em:U72761.1 Em:Y08890.1" FT /note="match: ESTs: Em:AI568841.1 Em:AL513854.1 FT Em:AL708378.1 Em:AU132880.1 Em:AU137263.1 Em:AW975761.1 FT Em:BF240511.1 Em:BG109871.1 Em:BG622522.1 Em:BI091767.1 FT Em:BI827617.1 Em:BM468937.1 Em:BM556244.1 Em:BM677000.1 FT Em:BM799977.1 Em:BM800655.1 Em:BQ001465.1 Em:BQ068431.1 FT Em:BQ217175.1 Em:BQ220742.1 Em:BQ653718.1 Em:BQ722086.1" FT polyA_signal complement(6011055..6011060) FT CDS complement(6012290..6015607) FT /gene="RANBP6" FT /locus_tag="RP11-218I7.1-001" FT /standard_name="OTTHUMP00000021039" FT /product="RAN binding protein 6" FT /note="match: proteins: Sw:O00410 Sw:O00410 Sw:O00410 FT Sw:O60518 Sw:O60518 Sw:Q8BKC5" FT /protein_id="CAI12713.1" FT /translation="MAATASAGVPATVSEKQEFYQLLKNLINPSCMVRRQAEEIYENIP FT GLCKTTFLLDAVRNRRAGYEVRQMAAALLRRLLSSGFEEVYPNLPADVQRDVKIELILA FT VKLETHASMRKKLCDIFAVLARNLIDEDGTNHWPEGLKFLIDSIYSKNVVLWEVALHVF FT WHFPGIFGTQERHDLDIIKRLLDQCIQDQEHPAIRTLSARAAAAFVLANENNIALFKDF FT ADLLPGILQAVNDSCYQDDDSVLESLVEIADTVPKYLGPYLEDTLQLSLKLCGDSRLSN FT LQRQLALEVIVTLSETATPMLKKHTNIIAQAVPHILAMMVDLQDDEDWVNADEMEEDDF FT DSNAVAAESALDRLACGLGGKVVLPMTKEHIMQMLQSPDWKYRHAGLMALSAIGEGCHQ FT QMESILDETVNSVLLFLQDPHPRVRAAACTTLGQMATDFAPNFQKKFHETVIAALLRTM FT ENQGNQRVQSHAASALIIFIEDCPKSLLVLYVDSMVKNLHSVLVIKLQELIRNGTKLAL FT EQLVTTIASVADTIEEKFVPYYDIFMPSLKHIVELAVQKELKLLRGKTIECISHIGLAV FT GKEKFMQDASNVMQLLLKTQSDLNNMEDDDPQTSYMVSAWARMCKILGKDFQQYLPLVI FT EPLIKTASAKPDVALLDTQDVENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLV FT YYAKELREGFVEYTEQVVKLMVPLLKFYFHDNVRVAAAESMPFLLECARIRGPEYLAQM FT WQFICDPLIKAIGTEPDTDVLSEIMNSFAKSIEVMGDGCLNDEHLEELGGILKAKLEGH FT FKNQELRQVKRQEENYDQQVEMSLQDEDECDVYILTKVSDILHSLFSTYKEKILPWFEQ FT LLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVR FT QAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSKTKKNVIATENCISAIGKILK FT FKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLSFLCDLIESNHPVVIGPNNSNLPKIIS FT IIAEGKINETINYEDPCAKRLANVVRQVQTSEDLWLECVSQLDDEQQEALQELLNFA" FT mRNA complement(join(<6013498..6014356,6015472..6015612)) FT /gene="RANBP6" FT /locus_tag="RP11-218I7.1-002" FT /product="RAN binding protein 6" FT /note="match: ESTs: Em:AA043342.1 Em:AL527785.3 FT Em:BI918575.1" FT misc_feature 6037621 FT /note="Clone_right_end: RP11-165O14" FT mRNA join(6047360..6047508,6066365..6066714) FT /locus_tag="RP11-218I7.2-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AI651280.1 Em:AI970391.1 FT Em:AW243550.1 Em:AW590614.1 Em:BF062077.1 Em:BF222880.1" FT misc_feature 6070043 FT /note="Clone_left_end: RP11-575C20" FT misc_feature 6072143..6271559 FT /note="annotated region of clone" FT misc_feature 6156412 FT /note="Clone_right_end: RP11-218I7" FT misc_feature 6188680 FT /note="Clone_left_end: RP11-279E1" FT CDS join(6195934..6196846,6197158..6197470) FT /pseudo FT /locus_tag="RP11-575C20.1-001" FT /product="general transcription factor IIIA (GTF3A) FT pseudogene" FT /note="match: proteins: Sw:P03001 Sw:P17842 Sw:P34694 FT Sw:P34695 Sw:Q92664 Tr:Q8K270 Tr:Q8VHT7 Tr:Q8VHT8 FT Tr:Q9CSH8" FT misc_feature 6231032..6231078 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 6231299..6231369 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT mRNA join(6241682..6241785,6250474..6250599,6251140..6251265, FT 6252866..6252991,6253552..6253602,6254462..6254553, FT 6255968..6257983) FT /gene="IL33" FT /locus_tag="RP11-575C20.2-001" FT /product="interleukin 33" FT /note="match: ESTs: Em:AA428482.1 Em:AA479893.1 FT Em:AI016160.1 Em:AI636918.1 Em:AL544952.1 Em:AL545473.1 FT Em:AL545577.1 Em:AL545605.1 Em:AL570880.1 Em:AL602291.1 FT Em:AV706157.1 Em:AV706195.1 Em:AV752217.1 Em:AW632607.1 FT Em:AW954874.1 Em:BI668792.1 Em:BM804742.1 Em:BQ878541.1 FT Em:BQ889038.1 Em:BQ894344.1 Em:D60585.1 Em:W79345.1" FT /note="match: cDNAs: Em:AB024517.1 Em:AB024518.1 FT Em:AL080211.1" FT mRNA join(6241693..6241785,6242192..6242734) FT /gene="IL33" FT /locus_tag="RP11-575C20.2-002" FT /product="interleukin 33" FT /note="match: ESTs: Em:BG200777.1" FT CDS join(6241695..6241785,6250474..6250599,6251140..6251265, FT 6252866..6252991,6253552..6253602,6254462..6254553, FT 6255968..6256168) FT /gene="IL33" FT /locus_tag="RP11-575C20.2-001" FT /standard_name="OTTHUMP00000021041" FT /product="interleukin 33" FT /note="match: proteins: Sw:O95760" FT /protein_id="CAI16003.1" FT /translation="MKPKMKYSTNKISTAKWKNTASKALCFKLGKSQQKAKEVCPMYFM FT KLRSGLMIKKEACYFRRETTKRPSLKTGRKHKRHLVLAACQQQSTVECFAFGISGVQKY FT TRALHDSSITGISPITEYLASLSTYNDQSITFALEDESYEIYVEDLKKDEKKDKVLLSY FT YESQHPSNESGDGVDGKMLMVTLSPTKDFWLHANNKEHSVELHKCEKPLPDQAFFVLHN FT MHSNCVSFECKTDPGVFIGVKDNHLALIKVDSSENLCTENILFKLSET" FT polyA_signal 6257960..6257965 FT polyA_site 6257983 FT misc_feature 6271459 FT /note="Clone_right_end: RP11-575C20" FT misc_feature 6271560..6277408 FT /note="annotated region of clone" FT CDS 6276465..6276969 FT /pseudo FT /locus_tag="RP11-279E1.1-001" FT /product="glycine cleavage system protein H (aminomethyl FT carrier) (GCSH) pseudogene" FT /note="match: proteins: Sw:P11183 Sw:P20821 Sw:P23434 FT Sw:Q91WK5 Sw:Q9N121 Sw:Q9U616 Sw:Q9U616 Tr:Q9CV53 Tr:Q9CY75 FT Tr:Q9CY75 Tr:Q9QYU8" FT misc_feature 6277209 FT /note="Clone_left_end: RP11-307L3" FT misc_feature 6277409..6466980 FT /note="annotated region of clone" FT CDS 6278667..6279153 FT /pseudo FT /locus_tag="RP11-307L3.2-001" FT /product="selenoprotein T pseudogene" FT /note="match: proteins: Sw:P62342 Sw:Q9U3N5 Sw:Q9VMV6" FT misc_feature 6323394..6323458 FT /note="Sequence derived from neighbouring clone AL360221 FT only" FT mRNA 6328375..6330670 FT /gene="TPD52L3" FT /locus_tag="RP11-307L3.3-001" FT /product="tumor protein D52-like 3" FT /note="match: cDNAs: Em:AK057479.1 Em:AY032877.1" FT /note="match: ESTs: Em:AA834968.1 Em:AI028342.1 FT Em:AI032390.1 Em:AL040413.1 Em:AW206997.1" FT mRNA join(6328375..6328962,6330182..6330914) FT /gene="TPD52L3" FT /locus_tag="RP11-307L3.3-003" FT /product="tumor protein D52-like 3" FT /note="match: cDNAs: Em:BC017589.1" FT /note="match: ESTs: Em:AI041556.1 Em:AI042725.1 FT Em:BG700389.1 Em:BG718156.1 Em:BI828707.1" FT mRNA join(6328404..6328962,6330976..6331900) FT /gene="TPD52L3" FT /locus_tag="RP11-307L3.3-002" FT /product="tumor protein D52-like 3" FT /note="match: cDNAs: Em:BC033792.1" FT /note="match: ESTs: Em:AA411964.1 Em:AI024918.1 FT Em:AI809924.1 Em:AI962433.1 Em:AW104889.1 Em:BI519930.1 FT Em:BI826146.1" FT CDS 6328596..6329018 FT /gene="TPD52L3" FT /locus_tag="RP11-307L3.3-001" FT /standard_name="OTTHUMP00000021042" FT /product="tumor protein D52-like 3" FT /note="match: proteins: Tr:Q96J77 Tr:Q96M09" FT /protein_id="CAI13289.1" FT /translation="MPHARTETSVGTYESHSTSELEDLTEPEQRELKTKLTKLEAEIVT FT LRHVLAAKERRCGELKRKLGLTALVGLRQNLSKSWLDVQVSNTYVKQKTSAALSTMGTL FT ICRKLGGVKKSATFRSFEGLMGTIKSKVSGGKRAWP" FT CDS join(6328596..6328962,6330182..6330213) FT /gene="TPD52L3" FT /locus_tag="RP11-307L3.3-003" FT /standard_name="OTTHUMP00000021044" FT /product="tumor protein D52-like 3" FT /protein_id="CAI13290.1" FT /translation="MPHARTETSVGTYESHSTSELEDLTEPEQRELKTKLTKLEAEIVT FT LRHVLAAKERRCGELKRKLGLTALVGLRQNLSKSWLDVQVSNTYVKQKTSAALSTMGTL FT ICRKLGGVKKSATFRSFEGNPKGEGSRI" FT CDS join(6328596..6328962,6330976..6331019) FT /gene="TPD52L3" FT /locus_tag="RP11-307L3.3-002" FT /standard_name="OTTHUMP00000021043" FT /product="tumor protein D52-like 3" FT /note="match: proteins: Tr:Q8N4P5" FT /protein_id="CAI13291.1" FT /translation="MPHARTETSVGTYESHSTSELEDLTEPEQRELKTKLTKLEAEIVT FT LRHVLAAKERRCGELKRKLGLTALVGLRQNLSKSWLDVQVSNTYVKQKTSAALSTMGTL FT ICRKLGGVKKSATFRSFEGLIFNKYTLNQGRN" FT polyA_signal 6330642..6330647 FT polyA_site 6330670 FT polyA_signal 6330898..6330903 FT polyA_site 6330914 FT polyA_signal 6331865..6331870 FT polyA_site 6331900 FT misc_feature 6355532 FT /note="Clone_right_end: RP11-279E1" FT mRNA join(6413151..6413643,6420912..6421142,6433914..6434173, FT 6460573..6460791,AL353718.10:10411..10520, FT AL353718.10:12642..12828,AL353718.10:16663..16786, FT AL353718.10:17012..17119,AL353718.10:21841..21945, FT AL353718.10:27323..27422,AL353718.10:28846..28952, FT AL353718.10:32218..32380,AL353718.10:33038..33178, FT AL353718.10:34855..34951,AL353718.10:35572..35729, FT AL353718.10:39613..39711,AL353718.10:41053..42074) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-001" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: cDNAs: Em:BC028397.1" FT /note="match: ESTs: Em:BG709183.1 Em:BI465154.1 FT Em:BI550520.1 Em:BM147228.1 Em:BM152672.1 Em:BM461786.1" FT mRNA join(6413193..6413355,6413483..6413643,6420912..6421142, FT 6433914..6434348) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-011" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT mRNA join(6413323..6413643,6420912..6421142,6433914..6434173, FT 6460573..6460791,AL353718.10:10411..10520, FT AL353718.10:12642..12828,AL353718.10:16663..16786, FT AL353718.10:17012..17119,AL353718.10:21841..21945, FT AL353718.10:28846..28952,AL353718.10:32218..32380, FT AL353718.10:33038..33178,AL353718.10:34855..34951, FT AL353718.10:35572..35729,AL353718.10:39613..39711, FT AL353718.10:41053..42074) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-003" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: cDNAs: Em:AB071698.1 Em:AF274047.1 FT Em:AF274049.1" FT /note="match: ESTs: Em:AA314887.1 Em:AA544754.1 FT Em:AL585296.1 Em:AL707307.1 Em:BB217593.1 Em:BB240489.2 FT Em:BB610650.1 Em:BE613948.1 Em:BE738021.1 Em:BE782564.1 FT Em:BE886576.1 Em:BF023361.1 Em:BF362808.1 Em:BF544879.1 FT Em:BF750383.1 Em:BF895540.1 Em:BG021860.1 Em:BG327880.1 FT Em:BG340758.1 Em:BG400045.1 Em:BG536376.1 Em:BG539602.1 FT Em:BG696192.1 Em:BG771344.1 Em:BG778190.1 Em:BG869912.1 FT Em:BG975059.1 Em:BI112788.1 Em:BI181060.1 Em:BI819799.1 FT Em:BM800706.1 Em:BM923046.1 Em:BQ334539.1 Em:BQ437591.1 FT Em:BU054906.1" FT mRNA join(6413418..6413643,6420912..6421142,6422635..6422979) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-002" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: ESTs: Em:AA972739.1 Em:AW664739.1 FT Em:CA313723.1" FT CDS join(6413491..6413643,6420912..6421142,6433914..6434173, FT 6460573..6460791,AL353718.10:10411..10520, FT AL353718.10:12642..12828,AL353718.10:16663..16786, FT AL353718.10:17012..17119,AL353718.10:21841..21945, FT AL353718.10:28846..28952,AL353718.10:32218..32380, FT AL353718.10:33038..33178,AL353718.10:34855..34951, FT AL353718.10:35572..35729,AL353718.10:39613..39711, FT AL353718.10:41053..41199) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-003" FT /standard_name="OTTHUMP00000021047" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: proteins: Sw:Q7TMI3 Sw:Q96PU4" FT /protein_id="CAI13293.1" FT /translation="MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRL FT FYRGKQLENGYTLFDYDVGLNDIIQLLVRPDPDHLPGTSTQIEAKPCSNSPPKVKKAPR FT VGPSNQPSTSARARLIDPGFGIYKVNELVDARDVGLGAWFEAHIHSVTRASDGQSRGKT FT PLKNGSSCKRTNGNIKHKSKENTNKLDSVPSTSNSDCVAADEDVIYHIQYDEYPESGTL FT EMNVKDLRPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEITTLKTISRTKKEL FT RVKIFLGGSEGTLNDCKIISVDEIFKIERPGAHPLSFADGKFLRRNDPECDLCGGDPEK FT KCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSSEV FT VKAGERLKMSKKKAKMPSASTESRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGST FT WRFRVQVSEAGVHRPHVGGIHGRSNDGAYSLVLAGGFADEVDRGDEFTYTGSGGKNLAG FT NKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKY FT APEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRL FT QYPAGYPSDKEGKKPKGQSKKQPSGTTKRPISDDDCPSASKVYKASDSAEAIEAFQLTP FT QQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVC FT KDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYSKGR" FT CDS join(6413491..6413643,6420912..6421142,6422635..6422661) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-002" FT /standard_name="OTTHUMP00000021046" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /protein_id="CAI13294.1" FT /translation="MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRL FT FYRGKQLENGYTLFDYDVGLNDIIQLLVRPDPDHLPGTSTQIEAKPCSNSPPKVKKAPR FT VGPSNQPSTSARARLIDPGFGIYKGLALSPRL" FT mRNA join(6413777..6413911,6420912..6421142,6433914..6434173, FT 6460573..6460581) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-012" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: ESTs: Em:BI562531.1 Em:DB072880.1 FT Em:DB442470.1 Em:DB448285.1 Em:DB455516.1" FT mRNA join(6414058..6414168,6420912..6421142,6433914..6434025) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-013" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: ESTs: Em:DB449653.1" FT mRNA join(6421031..6421142,6460573..6460791, FT AL353718.10:10411..10520,AL353718.10:12642..>12674) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-004" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: ESTs: Em:AA449626.1" FT polyA_signal 6422960..6422965 FT polyA_site 6422979 FT mRNA join(6434088..6434173,6460573..6460791, FT AL353718.10:10411..10520,AL353718.10:12642..12828, FT AL353718.10:16663..16786,AL353718.10:17012..17119, FT AL353718.10:21841..21945,AL353718.10:28846..31018) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-010" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: cDNAs: Em:AK122730.1" FT misc_feature 6437738 FT /note="Clone_left_end: RP11-472F14" FT mRNA complement(join(<6415145..6415563,6449340..6449558)) FT /locus_tag="RP11-307L3.4-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BF726910.1 Em:BF726911.1" FT CDS join(6460598..6460791,AL353718.10:10411..10520, FT AL353718.10:12642..>12674) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-004" FT /standard_name="OTTHUMP00000021048" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /protein_id="CAI13295.1" FT /translation="MNVKDLRPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI FT TTLKTISRTKKELRVKIFLGGSEGTLNDCKIISVDEIFKIERPGAHPLSFADGKFLRRN FT DPECDLCG" FT misc_feature 6466880 FT /note="Clone_right_end: RP11-307L3" FT misc_feature 6466981..6611726 FT /note="annotated region of clone" FT mRNA join(6482051..6482099,6484597..6484686,6486821..6486925, FT 6492303..6492844) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-007" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: ESTs: Em:AA383803.1 Em:AW853260.1 FT Em:BE969696.1" FT mRNA join(6486871..6486925,6492303..6492402,6493826..6493932, FT 6495585..6497103,6497198..6497360,6498018..6498158, FT 6499835..6499931,6500552..6500709,6504593..6504691, FT 6506033..6507054) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-005" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: cDNAs: Em:AL833522.1" FT /note="match: ESTs: Em:AA307547.1 Em:AA724762.1 FT Em:AW340485.1 Em:AW961183.1 Em:BE044309.1 Em:BE539741.1 FT Em:N50913.1" FT mRNA join(6497049..6497103,6497198..6497268,6498018..6498150) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-008" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: ESTs: Em:AA352424.1" FT mRNA join(6498352..6499931,6500552..6500709,6504593..6504691, FT 6506033..6507054) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-006" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: cDNAs: Em:AL137728.1" FT mRNA complement(join(6532464..6533160,6534708..6534788, FT 6536064..6536236,6540051..6540146,6550803..6550914, FT 6553368..6553509,6554669..6554781,6556153..6556302, FT 6558559..6558684,6565354..6565429,6587141..6587283, FT 6588401..6588442,6588618..6588702,6589195..6589292, FT 6592143..6592223,6592851..6592990,6595014..6595119, FT 6602109..6602205,6604588..6604784,6605131..6605278, FT 6606592..6606669,6610192..6610356,AL162411.23:10458..10593, FT AL162411.23:34888..34966,AL162411.23:35519..35924)) FT /gene="GLDC" FT /locus_tag="RP11-472F14.1-001" FT /product="glycine dehydrogenase (decarboxylating)" FT /note="match: cDNAs: Em:AK010327.1 Em:BC017135.1 FT Em:D90239.1 Em:D90266.1 Em:M63635.1 Em:M64402.1 FT Em:M64590.1" FT /note="match: ESTs: Em:AA300474.1 Em:AA409757.1 FT Em:AA580613.1 Em:AI322679.1 Em:AI760965.1 Em:AI808105.1 FT Em:AL133881.1 Em:AU098901.1 Em:AU124921.1 Em:AU125752.1 FT Em:AU128699.1 Em:AU130455.1 Em:AV647010.1 Em:AV659182.1 FT Em:AW211191.1 Em:AW292881.1 Em:BB619424.1 Em:BB645548.1 FT Em:BE222825.1 Em:BE280944.1 Em:BE542432.1 Em:BF039008.1 FT Em:BF564860.1 Em:BF695752.1 Em:BG115748.1 Em:BG578013.1 FT Em:BG674896.1 Em:BG696971.1 Em:BG706112.1 Em:BG970133.1 FT Em:BI089975.1 Em:BM556699.1 Em:BQ327546.1 Em:BQ379549.1 FT Em:BQ425169.1" FT CDS complement(join(6533017..6533160,6534708..6534788, FT 6536064..6536236,6540051..6540146,6550803..6550914, FT 6553368..6553509,6554669..6554781,6556153..6556302, FT 6558559..6558684,6565354..6565429,6587141..6587283, FT 6588401..6588442,6588618..6588702,6589195..6589292, FT 6592143..6592223,6592851..6592990,6595014..6595119, FT 6602109..6602205,6604588..6604784,6605131..6605278, FT 6606592..6606669,6610192..6610356,AL162411.23:10458..10593, FT AL162411.23:34888..34966,AL162411.23:35519..35773)) FT /gene="GLDC" FT /locus_tag="RP11-472F14.1-001" FT /standard_name="OTTHUMP00000021050" FT /product="glycine dehydrogenase (decarboxylating)" FT /note="match: proteins: Sw:P23378.1 Sw:Q91W43 Tr:Q9HDA3" FT /protein_id="CAQ07607.1" FT /translation="MQSCARAWGLRLGRGVGGGRRLAGGSGPCWAPRSRDSSSGGGDSA FT AAGASRLLERLLPRHDDFARRHIGPGDKDQREMLQTLGLASIDELIEKTVPANIRLKRP FT LKMEDPVCENEILATLHAISSKNQIWRSYIGMGYYNCSVPQTILRNLLENSGWITQYTP FT YQPEVSQGRLESLLNYQTMVCDITGLDMANASLLDEGTAAAEALQLCYRHNKRRKFLVD FT PRCHPQTIAVVQTRAKYTGVLTELKLPCEMDFSGKDVSGVLFQYPDTEGKVEDFTELVE FT RAHQSGSLACCATDLLALCILRPPGEFGVDIALGSSQRFGVPLGYGGPHAAFFAVRESL FT VRMMPGRMVGVTRDATGKEVYRLALQTREQHIRRDKATSNICTAQALLANMAAMFAIYH FT GSHGLEHIARRVHNATLILSEGLKRAGHQLQHDLFFDTLKIQCGCSVKEVLGRAAQRQI FT NFRLFEDGTLGISLDETVNEKDLDDLLWIFGCESSAELVAESMGEECRGIPGSVFKRTS FT PFLTHQVFNSYHSETNIVRYMKKLENKDISLVHSMIPLGSCTMKLNSSSELAPITWKEF FT ANIHPFVPLDQAQGYQQLFRELEKDLCELTGYDQVCFQPNSGAQGEYAGLATIRAYLNQ FT KGEGHRTVCLIPKSAHGTNPASAHMAGMKIQPVEVDKYGNIDAVHLKAMVDKHKENLAA FT IMITYPSTNGVFEENISDVCDLIHQHGGQVYLDGANMNAQVGICRPGDFGSDVSHLNLH FT KTFCIPHGGGGPGMGPIGVKKHLAPFLPNHPVISLKRNEDACPVGTVSAAPWGSSSILP FT ISWAYIKMMGGKGLKQATETAILNANYMAKRLETHYRILFRGARGYVGHEFILDTRPFK FT KSANIEAVDVAKRLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMISIRQEI FT ADIEEGRIDPRVNPLKMSPHSLTCVTSSHWDRPYSREVAAFPLPFVKPENKFWPTIARI FT DDIYGDQHLVCTCPPMEVYESPFSEQKRASS" FT mRNA join(6504350..6504691,6506033..6506112) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-009" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: ESTs: Em:F12908.1 Em:T75062.1" FT polyA_signal 6507030..6507035 FT polyA_site 6507054 FT misc_feature 6513774..6513805 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT polyA_site complement(6532464) FT polyA_signal complement(6532483..6532488) FT mRNA complement(join(6532899..6533160,6534708..6534788, FT 6535947..6536236,6540051..6540179)) FT /gene="GLDC" FT /locus_tag="RP11-472F14.1-003" FT /product="glycine dehydrogenase (decarboxylating)" FT /note="match: ESTs: Em:BG739798.1" FT mRNA complement(join(6553432..6553509,6554669..6554909)) FT /gene="GLDC" FT /locus_tag="RP11-472F14.1-004" FT /product="glycine dehydrogenase (decarboxylating)" FT /note="match: cDNAs: Em:F15257.1" FT mRNA complement(join(6557948..6558684,6565354..6565418)) FT /gene="GLDC" FT /locus_tag="RP11-472F14.1-005" FT /product="glycine dehydrogenase (decarboxylating)" FT /note="match: ESTs: Em:BF685886.1" FT CDS 6568844..6569360 FT /pseudo FT /locus_tag="RP11-472F14.4-001" FT /product="pseudogene similar to part of DCN1, defective in FT cullin neddylation 1, domain containing 1 (S. cerevisiae) FT DCUN1D1" FT /note="match: proteins: Sw:Q6PH85 Sw:Q96GG9 Sw:Q9QZ73 FT Tr:Q99NE7" FT misc_feature 6574990 FT /note="Clone_left_end: RP11-106A1" FT mRNA join(AL133480.9:135843..136335,AL133480.9:143604..143834, FT AL133480.9:156606..156865,AL133480.9:183265..183483, FT 6475391..6475500,6477622..6477808,6481643..6481766, FT 6481992..6482099,6486821..6486925,6492303..6492402, FT 6493826..6493932,6497198..6497360,6498018..6498158, FT 6499835..6499931,6500552..6500709,6504593..6504691, FT 6506033..6507054) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-001" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: cDNAs: Em:BC028397.1" FT /note="match: ESTs: Em:BG709183.1 Em:BI465154.1 FT Em:BI550520.1 Em:BM147228.1 Em:BM152672.1 Em:BM461786.1" FT mRNA join(AL133480.9:136015..136335,AL133480.9:143604..143834, FT AL133480.9:156606..156865,AL133480.9:183265..183483, FT 6475391..6475500,6477622..6477808,6481643..6481766, FT 6481992..6482099,6486821..6486925,6493826..6493932, FT 6497198..6497360,6498018..6498158,6499835..6499931, FT 6500552..6500709,6504593..6504691,6506033..6507054) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-003" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: cDNAs: Em:AB071698.1 Em:AF274047.1 FT Em:AF274049.1" FT /note="match: ESTs: Em:AA314887.1 Em:AA544754.1 FT Em:AL585296.1 Em:AL707307.1 Em:BB217593.1 Em:BB240489.2 FT Em:BB610650.1 Em:BE613948.1 Em:BE738021.1 Em:BE782564.1 FT Em:BE886576.1 Em:BF023361.1 Em:BF362808.1 Em:BF544879.1 FT Em:BF750383.1 Em:BF895540.1 Em:BG021860.1 Em:BG327880.1 FT Em:BG340758.1 Em:BG400045.1 Em:BG536376.1 Em:BG539602.1 FT Em:BG696192.1 Em:BG771344.1 Em:BG778190.1 Em:BG869912.1 FT Em:BG975059.1 Em:BI112788.1 Em:BI181060.1 Em:BI819799.1 FT Em:BM800706.1 Em:BM923046.1 Em:BQ334539.1 Em:BQ437591.1 FT Em:BU054906.1" FT CDS join(AL133480.9:136183..136335,AL133480.9:143604..143834, FT AL133480.9:156606..156865,AL133480.9:183265..183483, FT 6475391..6475500,6477622..6477808,6481643..6481766, FT 6481992..6482099,6486821..6486925,6493826..6493932, FT 6497198..6497360,6498018..6498158,6499835..6499931, FT 6500552..6500709,6504593..6504691,6506033..6506179) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-003" FT /standard_name="OTTHUMP00000021047" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: proteins: Sw:Q7TMI3 Sw:Q96PU4" FT /protein_id="CAH74119.1" FT /translation="MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRL FT FYRGKQLENGYTLFDYDVGLNDIIQLLVRPDPDHLPGTSTQIEAKPCSNSPPKVKKAPR FT VGPSNQPSTSARARLIDPGFGIYKVNELVDARDVGLGAWFEAHIHSVTRASDGQSRGKT FT PLKNGSSCKRTNGNIKHKSKENTNKLDSVPSTSNSDCVAADEDVIYHIQYDEYPESGTL FT EMNVKDLRPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEITTLKTISRTKKEL FT RVKIFLGGSEGTLNDCKIISVDEIFKIERPGAHPLSFADGKFLRRNDPECDLCGGDPEK FT KCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTDSSEV FT VKAGERLKMSKKKAKMPSASTESRRDWGRGMACVGRTRECTIVPSNHYGPIPGIPVGST FT WRFRVQVSEAGVHRPHVGGIHGRSNDGAYSLVLAGGFADEVDRGDEFTYTGSGGKNLAG FT NKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKY FT APEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRL FT QYPAGYPSDKEGKKPKGQSKKQPSGTTKRPISDDDCPSASKVYKASDSAEAIEAFQLTP FT QQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVC FT KDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYSKGR" FT mRNA complement(join(6589207..6589292,6592143..6592223, FT 6592851..6592990,6595014..6595119,6602109..6602205, FT 6605131..6605272)) FT /gene="GLDC" FT /locus_tag="RP11-472F14.1-002" FT /product="glycine dehydrogenase (decarboxylating)" FT /note="match: ESTs: Em:BG257593.1" FT mRNA join(AL133480.9:143723..143834,AL133480.9:183265..183483, FT 6475391..6475500,6477622..>6477654) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-004" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: ESTs: Em:AA449626.1" FT misc_feature 6609726 FT /note="Clone_right_end: RP11-472F14" FT mRNA join(AL133480.9:156780..156865,AL133480.9:183265..183483, FT 6475391..6475500,6477622..6477808,6481643..6481766, FT 6481992..6482099,6486821..6486925,6493826..6495998) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-010" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /note="match: cDNAs: Em:AK122730.1" FT CDS join(AL133480.9:183290..183483,6475391..6475500, FT 6477622..>6477654) FT /gene="UHRF2" FT /locus_tag="RP11-472F14.2-004" FT /standard_name="OTTHUMP00000021048" FT /product="ubiquitin-like with PHD and ring finger domains FT 2" FT /protein_id="CAH74120.1" FT /translation="MNVKDLRPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI FT TTLKTISRTKKELRVKIFLGGSEGTLNDCKIISVDEIFKIERPGAHPLSFADGKFLRRN FT DPECDLCG" FT misc_feature 6611727..6669690 FT /note="annotated region of clone" FT CDS complement(join(6669004..6669690,AL354707.17:2001..2318)) FT /pseudo FT /locus_tag="RP11-390F4.4-001" FT /product="ring finger protein 2 (RNF2) pseudogene" FT /note="match: proteins: Sw:O35730 Sw:Q06587 Sw:Q803I4 FT Sw:Q8WMN5 Sw:Q99496 Sw:Q9CQJ4 Sw:Q9VB08 Tr:Q06587" FT CDS 6639139..6639604 FT /pseudo FT /locus_tag="RP11-106A1.2-001" FT /product="ribosomal protein L23a (RPL23A) pseudogene" FT /note="match: proteins: Sw:P62751 Sw:P62752 Sw:Q8LD46 FT Sw:Q9AT35 Sw:Q9M3C3 Tr:Q90YU4 Tr:Q91YK6 Tr:Q9LWB2 FT Tr:Q9LWB3" FT mRNA complement(join(AL353718.10:67484..68180, FT AL353718.10:69728..69808,AL353718.10:71084..71256, FT AL353718.10:75071..75166,AL353718.10:85823..85934, FT AL353718.10:88388..88529,AL353718.10:89689..89801, FT AL353718.10:91173..91322,AL353718.10:93579..93704, FT AL353718.10:100374..100449,AL353718.10:122161..122303, FT AL353718.10:123421..123462,AL353718.10:123638..123722, FT AL353718.10:124215..124312,AL353718.10:127163..127243, FT AL353718.10:127871..128010,AL353718.10:130034..130139, FT AL353718.10:137129..137225,AL353718.10:139608..139804, FT AL353718.10:140151..140298,AL353718.10:141612..141689, FT AL353718.10:145212..145376,6620184..6620319, FT 6644614..6644692,6645245..6645650)) FT /gene="GLDC" FT /locus_tag="RP11-472F14.1-001" FT /product="glycine dehydrogenase (decarboxylating)" FT /note="match: cDNAs: Em:AK010327.1 Em:BC017135.1 FT Em:D90239.1 Em:D90266.1 Em:M63635.1 Em:M64402.1 FT Em:M64590.1" FT /note="match: ESTs: Em:AA300474.1 Em:AA409757.1 FT Em:AA580613.1 Em:AI322679.1 Em:AI760965.1 Em:AI808105.1 FT Em:AL133881.1 Em:AU098901.1 Em:AU124921.1 Em:AU125752.1 FT Em:AU128699.1 Em:AU130455.1 Em:AV647010.1 Em:AV659182.1 FT Em:AW211191.1 Em:AW292881.1 Em:BB619424.1 Em:BB645548.1 FT Em:BE222825.1 Em:BE280944.1 Em:BE542432.1 Em:BF039008.1 FT Em:BF564860.1 Em:BF695752.1 Em:BG115748.1 Em:BG578013.1 FT Em:BG674896.1 Em:BG696971.1 Em:BG706112.1 Em:BG970133.1 FT Em:BI089975.1 Em:BM556699.1 Em:BQ327546.1 Em:BQ379549.1 FT Em:BQ425169.1" FT CDS complement(join(AL353718.10:68037..68180, FT AL353718.10:69728..69808,AL353718.10:71084..71256, FT AL353718.10:75071..75166,AL353718.10:85823..85934, FT AL353718.10:88388..88529,AL353718.10:89689..89801, FT AL353718.10:91173..91322,AL353718.10:93579..93704, FT AL353718.10:100374..100449,AL353718.10:122161..122303, FT AL353718.10:123421..123462,AL353718.10:123638..123722, FT AL353718.10:124215..124312,AL353718.10:127163..127243, FT AL353718.10:127871..128010,AL353718.10:130034..130139, FT AL353718.10:137129..137225,AL353718.10:139608..139804, FT AL353718.10:140151..140298,AL353718.10:141612..141689, FT AL353718.10:145212..145376,6620184..6620319, FT 6644614..6644692,6645245..6645499)) FT /gene="GLDC" FT /locus_tag="RP11-472F14.1-001" FT /standard_name="OTTHUMP00000021050" FT /product="glycine dehydrogenase (decarboxylating)" FT /note="match: proteins: Sw:P23378.1 Sw:Q91W43 Tr:Q9HDA3" FT /protein_id="CAQ10367.1" FT /translation="MQSCARAWGLRLGRGVGGGRRLAGGSGPCWAPRSRDSSSGGGDSA FT AAGASRLLERLLPRHDDFARRHIGPGDKDQREMLQTLGLASIDELIEKTVPANIRLKRP FT LKMEDPVCENEILATLHAISSKNQIWRSYIGMGYYNCSVPQTILRNLLENSGWITQYTP FT YQPEVSQGRLESLLNYQTMVCDITGLDMANASLLDEGTAAAEALQLCYRHNKRRKFLVD FT PRCHPQTIAVVQTRAKYTGVLTELKLPCEMDFSGKDVSGVLFQYPDTEGKVEDFTELVE FT RAHQSGSLACCATDLLALCILRPPGEFGVDIALGSSQRFGVPLGYGGPHAAFFAVRESL FT VRMMPGRMVGVTRDATGKEVYRLALQTREQHIRRDKATSNICTAQALLANMAAMFAIYH FT GSHGLEHIARRVHNATLILSEGLKRAGHQLQHDLFFDTLKIQCGCSVKEVLGRAAQRQI FT NFRLFEDGTLGISLDETVNEKDLDDLLWIFGCESSAELVAESMGEECRGIPGSVFKRTS FT PFLTHQVFNSYHSETNIVRYMKKLENKDISLVHSMIPLGSCTMKLNSSSELAPITWKEF FT ANIHPFVPLDQAQGYQQLFRELEKDLCELTGYDQVCFQPNSGAQGEYAGLATIRAYLNQ FT KGEGHRTVCLIPKSAHGTNPASAHMAGMKIQPVEVDKYGNIDAVHLKAMVDKHKENLAA FT IMITYPSTNGVFEENISDVCDLIHQHGGQVYLDGANMNAQVGICRPGDFGSDVSHLNLH FT KTFCIPHGGGGPGMGPIGVKKHLAPFLPNHPVISLKRNEDACPVGTVSAAPWGSSSILP FT ISWAYIKMMGGKGLKQATETAILNANYMAKRLETHYRILFRGARGYVGHEFILDTRPFK FT KSANIEAVDVAKRLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMISIRQEI FT ADIEEGRIDPRVNPLKMSPHSLTCVTSSHWDRPYSREVAAFPLPFVKPENKFWPTIARI FT DDIYGDQHLVCTCPPMEVYESPFSEQKRASS" FT mRNA join(6645956..6646085,6669544..6669690, FT AL354707.17:2001..2038,AL354707.17:2735..2945) FT /locus_tag="RP11-390F4.6-001" FT /product="novel transcript" FT /note="match: ESTs: Em:AI830434.1 Em:AW772337.1 FT Em:BE048410.1" FT misc_feature 6655620..6655658 FT /note="Sequence from uni-directional dGTP big dye FT terminator reads only" FT CDS join(6662424..6662810,6663156..6663366,6663657..6663792) FT /pseudo FT /locus_tag="RP11-106A1.3-001" FT /product="ribosomal protein S3A (RPS3A) pseudogene" FT /note="match: proteins: Sw:O43999 Sw:O73813 Sw:P49242 FT Sw:P49395 Sw:P52813 Sw:P55830 Sw:P61246 Sw:P97351 Sw:Q98TX2 FT Tr:P93765 Tr:Q564F3 Tr:Q90YS1 Tr:Q95V35 Tr:Q9D1S3 FT Tr:Q9MBB3" FT misc_feature 6665691 FT /note="Clone_left_end: RP11-390F4" FT misc_feature 6669691..6838660 FT /note="annotated region of clone" FT CDS complement(join(AL162411.23:59278..59964,6669691..6670008)) FT /pseudo FT /locus_tag="RP11-390F4.4-001" FT /product="ring finger protein 2 (RNF2) pseudogene" FT /note="match: proteins: Sw:O35730 Sw:Q06587 Sw:Q803I4 FT Sw:Q8WMN5 Sw:Q99496 Sw:Q9CQJ4 Sw:Q9VB08 Tr:Q06587" FT CDS 6675215..6675662 FT /pseudo FT /locus_tag="RP11-390F4.2-001" FT /product="60S ribosomal protein L35a (RPL35A) pseudogene" FT /note="match: proteins: Sw:P18077" FT mRNA join(AL162411.23:36230..36359,AL162411.23:59818..59964, FT 6669691..6669728,6670425..6670635) FT /locus_tag="RP11-390F4.6-001" FT /product="novel transcript" FT /note="match: ESTs: Em:AI830434.1 Em:AW772337.1 FT Em:BE048410.1" FT mRNA join(6704471..6704653,6707542..6707780) FT /locus_tag="RP11-390F4.10-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AA723843.1 Em:AI247415.1" FT mRNA join(6716548..6716616,6717873..6718981,6719071..6719154, FT 6720863..6720997,6723527..6723630) FT /locus_tag="RP11-390F4.3-001" FT /product="novel transcript" FT /note="match: ESTs: Em:AA634414.1" FT /note="match: cDNAs: Em:AK098534.1" FT mRNA join(6718810..6718981,6719071..6719370) FT /locus_tag="RP11-390F4.3-003" FT /product="novel transcript" FT /note="match: ESTs: Em:AW577992.1" FT mRNA join(6719068..6719154,6720863..6720997,6726503..6726619, FT 6726946..6727438) FT /locus_tag="RP11-390F4.3-002" FT /product="novel transcript" FT /note="match: ESTs: Em:BG698056.1 Em:BG698121.1" FT CDS complement(6734491..6735076) FT /pseudo FT /locus_tag="RP11-390F4.9-001" FT /product="chromosome 20 open reading frame 45 (C20orf45) FT pseudogene" FT /note="match: proteins: Sw:Q9CYY7 Sw:Q9Y3B1 Tr:O59707" FT misc_feature 6742616 FT /note="Clone_left_end: RP11-660M15" FT misc_feature 6742621 FT /note="Clone_right_end: RP11-106A1" FT polyA_site complement(6748546) FT mRNA complement(6748546..6749014) FT /gene="SNRPEL1" FT /locus_tag="RP11-390F4.1-001" FT /product="small nuclear ribonucleoprotein polypeptide FT E-like 1" FT /note="match: ESTs: Em:BG772284.1 Em:BQ018979.1" FT /note="match: cDNAs: Em:BC002639.1 Em:M37716.1 Em:X12466.1" FT polyA_signal complement(6748578..6748583) FT CDS complement(6748703..6748981) FT /gene="SNRPEL1" FT /locus_tag="RP11-390F4.1-001" FT /standard_name="OTTHUMP00000021051" FT /product="small nuclear ribonucleoprotein polypeptide FT E-like 1" FT /note="match: proteins: Sw:P62303" FT /protein_id="CAH73282.1" FT /translation="MAYSGQGQKVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEG FT CIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN" FT mRNA join(6757641..6758203,6792972..6793132,6805599..6805774, FT 6814631..6814745,AL445592.15:12847..13040, FT AL445592.15:43352..43401,AL445592.15:51300..51403, FT AL445592.15:56435..56572,AL513412.3:115535..115728, FT AL513412.3:116452..117375,AL513412.3:118776..119014, FT AL513412.3:120954..121276,AL513412.3:125026..125134, FT AL513412.3:146308..146489,AL513412.3:148398..148947) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-011" FT /product="jumonji domain containing 2C" FT /note="match: cDNAs: Em:BC060771.1" FT mRNA join(6757654..6758203,6792972..6793132,6805599..6805774, FT 6814631..6815149) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-010" FT /product="jumonji domain containing 2C" FT /note="match: cDNAs: Em:BC053678.1" FT mRNA join(6757656..6758203,6792972..6793132,6805599..6805774, FT 6814631..6814745,AL445592.15:12847..13040, FT AL445592.15:43352..43401,AL445592.15:51300..51403, FT AL445592.15:56435..56572,AL513412.3:115535..115728, FT AL513412.3:118776..119014,AL513412.3:120954..121276, FT AL513412.3:125026..125134,AL513412.3:146308..146489, FT AL513412.3:148398..148611,AL513412.3:150463..150539, FT AL513412.3:181472..181527,AL513412.3:183702..183810, FT AL137020.13:134726..134911,AL137020.13:159107..159277, FT AL161443.13:14148..14267,AL161443.13:18708..19842) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-002" FT /product="jumonji domain containing 2C" FT /note="match: ESTs: Em:AA465547.1 Em:AI291331.1 FT Em:AI341811.1 Em:AI567803.1 Em:AL701604.1 Em:AW863772.1 FT Em:AW863776.1 Em:BE265181.1 Em:BE537899.1 Em:BE708144.1 FT Em:BM147746.1 Em:BM456170.1 Em:BU078862.1 Em:BU188813.1 FT Em:CA391723.1" FT /note="match: cDNAs: Em:AB018323.1 Em:BC036628.1" FT mRNA join(6757656..6758203,6792972..6793132,6805599..6805774, FT 6814631..6814745,AL445592.15:12847..13040, FT AL445592.15:43352..43401,AL445592.15:51300..51403, FT AL445592.15:56435..56572,AL513412.3:115535..115728, FT AL513412.3:118776..119014,AL513412.3:120954..121276, FT AL513412.3:125026..125134,AL513412.3:146308..146489, FT AL513412.3:148398..148611,AL513412.3:150463..150539, FT AL513412.3:181472..181527,AL513412.3:183702..183810, FT AL137020.13:134726..134911,AL137020.13:159107..159277, FT AL161443.13:14148..14267,AL161443.13:18708..18800, FT AL161443.13:23463..24558) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-001" FT /product="jumonji domain containing 2C" FT /note="match: ESTs: Em:AA465547.1 Em:AA719275.1 FT Em:AI017056.1 Em:AI762198.1 Em:AI857847.1 Em:AL701604.1 FT Em:AW083815.1 Em:AW402136.1 Em:AW863772.1 Em:AW863776.1 FT Em:BE265181.1 Em:BE537899.1 Em:BE708144.1 Em:BF829543.1 FT Em:BM147746.1 Em:BM456170.1 Em:BU188813.1 Em:BU660755.1 FT Em:CA391723.1" FT /note="match: cDNAs: Em:AB037901.1" FT mRNA join(6758103..6758203,6792972..6793132,6805599..6805774, FT 6814631..6814745,AL445592.15:12847..13040, FT AL445592.15:43352..43401,AL445592.15:51300..51403, FT AL445592.15:56435..56972) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-003" FT /product="jumonji domain containing 2C" FT /note="match: ESTs: Em:AV645511.1" FT /note="match: cDNAs: Em:BC008296.1" FT mRNA join(6780333..6780490,6785601..6785929) FT /locus_tag="RP11-390F4.7-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AI400627.1" FT CDS join(6792989..6793132,6805599..6805774,6814631..6814745, FT AL445592.15:12847..13040,AL445592.15:43352..43401, FT AL445592.15:51300..51403,AL445592.15:56435..56572, FT AL513412.3:115535..115728,AL513412.3:118776..119014, FT AL513412.3:120954..121276,AL513412.3:125026..125134, FT AL513412.3:146308..146489,AL513412.3:148398..148611, FT AL513412.3:150463..150539,AL513412.3:181472..181527, FT AL513412.3:183702..183810,AL137020.13:134726..134911, FT AL137020.13:159107..159277,AL161443.13:14148..14267, FT AL161443.13:18708..18950) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-002" FT /standard_name="OTTHUMP00000021053" FT /product="jumonji domain containing 2C" FT /note="match: proteins: Sw:Q9H3R0" FT /protein_id="CAH73283.1" FT /translation="MEVAEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAG FT LAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLAN FT SGKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVE FT EECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE FT RLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGF FT NHGFNCAESTNFATVRWIDYGKVAKLCTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDI FT YTIDHTKPTPASTPEVKAWLQRRRKVRKASRSFQCARSTSKRPKADEEEEVSDEVDGAE FT VPNPDSVTDDLKVSEKSEAAVKLRNTEASSEEESSASRMQVEQNLSDHIKLSGNSCLST FT SVTEDIKTEDDKAYAYRSVPSISSEADDSIPLSSGYEKPEKSDPSELSWPKSPESCSSV FT AESNGVLTEGEESDVESHGNGLEPGEIPAVPSGERNSFKVPSIAEGENKTSKSWRHPLS FT RPPARSPMTLVKQQAPSDEELPEVLSIEEEVEETESWAKPLIHLWQTKSPNFAAEQEYN FT ATVARMKPHCAICTLLMPYHKPDSSNEENDARWETKLDEVVTSEGKTKPLIPEMCFIYS FT EENIEYSPPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTA FT ECCLCNLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCIF FT CRHRVKRVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKVNPNVK FT SKACEKVISVGQTVITKHRNTRYYSCRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRD FT CLKLGPPAEGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKREDIYTLDEE FT LPKRVKARFVSAGRCHLGTCQVNSLSSPHVSQAQQETYLGFWINSKKSQCNIFLSGTY" FT CDS join(6792989..6793132,6805599..6805774,6814631..6814745, FT AL445592.15:12847..13040,AL445592.15:43352..43401, FT AL445592.15:51300..51403,AL445592.15:56435..56572, FT AL513412.3:115535..115728,AL513412.3:118776..119014, FT AL513412.3:120954..121276,AL513412.3:125026..125134, FT AL513412.3:146308..146489,AL513412.3:148398..148611, FT AL513412.3:150463..150539,AL513412.3:181472..181527, FT AL513412.3:183702..183810,AL137020.13:134726..134911, FT AL137020.13:159107..159277,AL161443.13:14148..14267, FT AL161443.13:18708..18800,AL161443.13:23463..23639) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-001" FT /standard_name="OTTHUMP00000021052" FT /product="jumonji domain containing 2C" FT /note="match: proteins: Sw:Q8VCD7 Sw:Q9H3R0" FT /protein_id="CAH73284.1" FT /translation="MEVAEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAG FT LAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLAN FT SGKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVE FT EECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE FT RLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGF FT NHGFNCAESTNFATVRWIDYGKVAKLCTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDI FT YTIDHTKPTPASTPEVKAWLQRRRKVRKASRSFQCARSTSKRPKADEEEEVSDEVDGAE FT VPNPDSVTDDLKVSEKSEAAVKLRNTEASSEEESSASRMQVEQNLSDHIKLSGNSCLST FT SVTEDIKTEDDKAYAYRSVPSISSEADDSIPLSSGYEKPEKSDPSELSWPKSPESCSSV FT AESNGVLTEGEESDVESHGNGLEPGEIPAVPSGERNSFKVPSIAEGENKTSKSWRHPLS FT RPPARSPMTLVKQQAPSDEELPEVLSIEEEVEETESWAKPLIHLWQTKSPNFAAEQEYN FT ATVARMKPHCAICTLLMPYHKPDSSNEENDARWETKLDEVVTSEGKTKPLIPEMCFIYS FT EENIEYSPPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTA FT ECCLCNLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCIF FT CRHRVKRVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKVNPNVK FT SKACEKVISVGQTVITKHRNTRYYSCRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRD FT CLKLGPPAEGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKREDIYTLDEE FT LPKRVKARFSTASDMRFEDTFYGADIIQGERKRQRVLSSRFKNEYVADPVYRTFLKSSF FT QKKCQKRQ" FT CDS join(6792989..6793132,6805599..6805774,6814631..6814766) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-010" FT /standard_name="OTTHUMP00000197650" FT /product="jumonji domain containing 2C" FT /protein_id="CAQ07510.1" FT /translation="MEVAEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAG FT LAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLAN FT SGKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGSIYDEVHSYLQ" FT mRNA join(6805617..6805774,6814631..6814745,6818948..6819079) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-004" FT /product="jumonji domain containing 2C" FT /note="match: ESTs: Em:AI288727.1" FT polyA_signal 6815127..6815132 FT polyA_site 6815149 FT CDS 6834386..6835577 FT /pseudo FT /locus_tag="RP11-390F4.8-001" FT /product="actin pseudogene" FT /note="match: proteins: Sw:P60709" FT misc_feature 6836660 FT /note="Clone_right_end: RP11-390F4" FT misc_feature 6838661..6906366 FT /note="annotated region of clone" FT misc_feature 6863391 FT /note="Clone_left_end: RP11-403H13" FT mRNA join(6880046..6880061,6887960..6888063,6893095..6893258, FT 6893313..6893398) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-013" FT /product="jumonji domain containing 2C" FT /note="match: ESTs: Em:AV645419.1" FT mRNA join(6893123..6893232,AL513412.3:76196..76425, FT AL513412.3:77070..77244,AL513412.3:82643..82824) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-012" FT /product="jumonji domain containing 2C" FT /note="match: ESTs: Em:AI807895.1 Em:BX105818.1" FT mRNA join(6902670..6902752,AL513412.3:108437..108497, FT AL513412.3:109376..109549,AL513412.3:113235..113469) FT /locus_tag="RP11-403H13.1-001" FT /product="novel transcript" FT /note="match: ESTs: Em:DA232216.1" FT misc_feature 6904366 FT /note="Clone_right_end: RP11-660M15" FT mRNA join(AL354707.17:89951..90513,AL354707.17:125282..125442, FT AL354707.17:137909..138084,AL354707.17:146941..147055, FT 6849507..6849700,6880012..6880061,6887960..6888063, FT 6893095..6893232,AL513412.3:115535..115728, FT AL513412.3:116452..117375,AL513412.3:118776..119014, FT AL513412.3:120954..121276,AL513412.3:125026..125134, FT AL513412.3:146308..146489,AL513412.3:148398..148947) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-011" FT /product="jumonji domain containing 2C" FT /note="match: cDNAs: Em:BC060771.1" FT mRNA join(AL354707.17:89966..90513,AL354707.17:125282..125442, FT AL354707.17:137909..138084,AL354707.17:146941..147055, FT 6849507..6849700,6880012..6880061,6887960..6888063, FT 6893095..6893232,AL513412.3:115535..115728, FT AL513412.3:118776..119014,AL513412.3:120954..121276, FT AL513412.3:125026..125134,AL513412.3:146308..146489, FT AL513412.3:148398..148611,AL513412.3:150463..150539, FT AL513412.3:181472..181527,AL513412.3:183702..183810, FT AL137020.13:134726..134911,AL137020.13:159107..159277, FT AL161443.13:14148..14267,AL161443.13:18708..19842) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-002" FT /product="jumonji domain containing 2C" FT /note="match: cDNAs: Em:AB018323.1 Em:BC036628.1" FT /note="match: ESTs: Em:AA465547.1 Em:AI291331.1 FT Em:AI341811.1 Em:AI567803.1 Em:AL701604.1 Em:AW863772.1 FT Em:AW863776.1 Em:BE265181.1 Em:BE537899.1 Em:BE708144.1 FT Em:BM147746.1 Em:BM456170.1 Em:BU078862.1 Em:BU188813.1 FT Em:CA391723.1" FT mRNA join(AL354707.17:89966..90513,AL354707.17:125282..125442, FT AL354707.17:137909..138084,AL354707.17:146941..147055, FT 6849507..6849700,6880012..6880061,6887960..6888063, FT 6893095..6893232,AL513412.3:115535..115728, FT AL513412.3:118776..119014,AL513412.3:120954..121276, FT AL513412.3:125026..125134,AL513412.3:146308..146489, FT AL513412.3:148398..148611,AL513412.3:150463..150539, FT AL513412.3:181472..181527,AL513412.3:183702..183810, FT AL137020.13:134726..134911,AL137020.13:159107..159277, FT AL161443.13:14148..14267,AL161443.13:18708..18800, FT AL161443.13:23463..24558) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-001" FT /product="jumonji domain containing 2C" FT /note="match: cDNAs: Em:AB037901.1" FT /note="match: ESTs: Em:AA465547.1 Em:AA719275.1 FT Em:AI017056.1 Em:AI762198.1 Em:AI857847.1 Em:AL701604.1 FT Em:AW083815.1 Em:AW402136.1 Em:AW863772.1 Em:AW863776.1 FT Em:BE265181.1 Em:BE537899.1 Em:BE708144.1 Em:BF829543.1 FT Em:BM147746.1 Em:BM456170.1 Em:BU188813.1 Em:BU660755.1 FT Em:CA391723.1" FT mRNA join(AL354707.17:90413..90513,AL354707.17:125282..125442, FT AL354707.17:137909..138084,AL354707.17:146941..147055, FT 6849507..6849700,6880012..6880061,6887960..6888063, FT 6893095..6893632) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-003" FT /product="jumonji domain containing 2C" FT /note="match: cDNAs: Em:BC008296.1" FT /note="match: ESTs: Em:AV645511.1" FT CDS join(AL354707.17:125299..125442,AL354707.17:137909..138084, FT AL354707.17:146941..147055,6849507..6849700, FT 6880012..6880061,6887960..6888063,6893095..6893232, FT AL513412.3:115535..115728,AL513412.3:118776..119014, FT AL513412.3:120954..121276,AL513412.3:125026..125134, FT AL513412.3:146308..146489,AL513412.3:148398..148611, FT AL513412.3:150463..150539,AL513412.3:181472..181527, FT AL513412.3:183702..183810,AL137020.13:134726..134911, FT AL137020.13:159107..159277,AL161443.13:14148..14267, FT AL161443.13:18708..18950) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-002" FT /standard_name="OTTHUMP00000021053" FT /product="jumonji domain containing 2C" FT /note="match: proteins: Sw:Q9H3R0" FT /protein_id="CAI16322.1" FT /translation="MEVAEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAG FT LAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLAN FT SGKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVE FT EECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE FT RLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGF FT NHGFNCAESTNFATVRWIDYGKVAKLCTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDI FT YTIDHTKPTPASTPEVKAWLQRRRKVRKASRSFQCARSTSKRPKADEEEEVSDEVDGAE FT VPNPDSVTDDLKVSEKSEAAVKLRNTEASSEEESSASRMQVEQNLSDHIKLSGNSCLST FT SVTEDIKTEDDKAYAYRSVPSISSEADDSIPLSSGYEKPEKSDPSELSWPKSPESCSSV FT AESNGVLTEGEESDVESHGNGLEPGEIPAVPSGERNSFKVPSIAEGENKTSKSWRHPLS FT RPPARSPMTLVKQQAPSDEELPEVLSIEEEVEETESWAKPLIHLWQTKSPNFAAEQEYN FT ATVARMKPHCAICTLLMPYHKPDSSNEENDARWETKLDEVVTSEGKTKPLIPEMCFIYS FT EENIEYSPPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTA FT ECCLCNLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCIF FT CRHRVKRVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKVNPNVK FT SKACEKVISVGQTVITKHRNTRYYSCRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRD FT CLKLGPPAEGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKREDIYTLDEE FT LPKRVKARFVSAGRCHLGTCQVNSLSSPHVSQAQQETYLGFWINSKKSQCNIFLSGTY" FT CDS join(AL354707.17:125299..125442,AL354707.17:137909..138084, FT AL354707.17:146941..147055,6849507..6849700, FT 6880012..6880061,6887960..6888063,6893095..6893232, FT AL513412.3:115535..115728,AL513412.3:118776..119014, FT AL513412.3:120954..121276,AL513412.3:125026..125134, FT AL513412.3:146308..146489,AL513412.3:148398..148611, FT AL513412.3:150463..150539,AL513412.3:181472..181527, FT AL513412.3:183702..183810,AL137020.13:134726..134911, FT AL137020.13:159107..159277,AL161443.13:14148..14267, FT AL161443.13:18708..18800,AL161443.13:23463..23639) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-001" FT /standard_name="OTTHUMP00000021052" FT /product="jumonji domain containing 2C" FT /note="match: proteins: Sw:Q8VCD7 Sw:Q9H3R0" FT /protein_id="CAI16323.1" FT /translation="MEVAEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAG FT LAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLAN FT SGKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVE FT EECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE FT RLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGF FT NHGFNCAESTNFATVRWIDYGKVAKLCTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDI FT YTIDHTKPTPASTPEVKAWLQRRRKVRKASRSFQCARSTSKRPKADEEEEVSDEVDGAE FT VPNPDSVTDDLKVSEKSEAAVKLRNTEASSEEESSASRMQVEQNLSDHIKLSGNSCLST FT SVTEDIKTEDDKAYAYRSVPSISSEADDSIPLSSGYEKPEKSDPSELSWPKSPESCSSV FT AESNGVLTEGEESDVESHGNGLEPGEIPAVPSGERNSFKVPSIAEGENKTSKSWRHPLS FT RPPARSPMTLVKQQAPSDEELPEVLSIEEEVEETESWAKPLIHLWQTKSPNFAAEQEYN FT ATVARMKPHCAICTLLMPYHKPDSSNEENDARWETKLDEVVTSEGKTKPLIPEMCFIYS FT EENIEYSPPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTA FT ECCLCNLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCIF FT CRHRVKRVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKVNPNVK FT SKACEKVISVGQTVITKHRNTRYYSCRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRD FT CLKLGPPAEGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKREDIYTLDEE FT LPKRVKARFSTASDMRFEDTFYGADIIQGERKRQRVLSSRFKNEYVADPVYRTFLKSSF FT QKKCQKRQ" FT misc_feature 6865391..7057058 FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT repeat_region complement(6906513..6906548) FT /rpt_family="ALU" FT /note="100% identity: matches 155..190 of consensus" FT repeat_region complement(6906560..6906678) FT /rpt_family="ALU" FT /note="85% identity: matches 400..514 of consensus" FT repeat_region complement(6906645..6906730) FT /rpt_family="ALU" FT /note="83% identity: matches 12..97 of consensus" FT exon 6908343..6908359 FT /note="XPOUND prediction, score = 0.669" FT exon 6909483..6909517 FT /note="XPOUND prediction, score = 0.525" FT exon 6911959..6912079 FT /note="GENSCAN prediction, score = 6.73" FT exon 6913460..6913574 FT /note="GENSCAN prediction, score = 7.03" FT repeat_region complement(6914077..6914335) FT /rpt_family="ALU" FT /note="89% identity: matches 543..801 of consensus" FT repeat_region 6914101..6914194 FT /rpt_family="L1" FT /note="87% identity: matches 335..428 of consensus" FT repeat_region 6914229..6914338 FT /rpt_family="L1" FT /note="86% identity: matches 467..576 of consensus" FT exon 6915839..6915886 FT /note="XPOUND prediction, score = 0.300" FT exon 6916024..6916061 FT /note="XPOUND prediction, score = 0.297" FT repeat_region complement(6916496..6916558) FT /rpt_family="ALU" FT /note="88% identity: matches 309..371 of consensus" FT repeat_region 6917036..6917049 FT /note="TTG repeat" FT repeat_region complement(6918028..6918149) FT /rpt_family="L1" FT /note="90% identity: matches 561..682 of consensus" FT exon 6918039..6918145 FT /note="MZEF prediction, score = 0.896" FT repeat_region complement(6918208..6918604) FT /rpt_family="L1" FT /note="81% identity: matches 118..513 of consensus" FT repeat_region complement(6918444..6918854) FT /rpt_family="L1" FT /note="81% identity: matches 2..409 of consensus" FT repeat_region complement(6918870..6919137) FT /rpt_family="ALU" FT /note="89% identity: matches 15..281 of consensus" FT repeat_region 6918876..6919136 FT /rpt_family="L1" FT /note="84% identity: matches 167..424 of consensus" FT repeat_region 6918946..6919076 FT /rpt_type=INVERTED FT /note="IR5, 83% complementary to IR5' (54966..55096)" FT repeat_region 6919170..6919305 FT /rpt_family="tctt repeat" FT /rpt_type=TANDEM FT /note="homology = 68.4%, counts = 34" FT repeat_region 6919224..6919303 FT /note="TTCT repeat" FT repeat_region complement(6919308..6919407) FT /rpt_family="L1" FT /note="88% identity: matches 2..101 of consensus" FT repeat_region 6919530..6919548 FT /note="TCTG repeat" FT repeat_region 6919530..6919593 FT /rpt_family="tcta repeat" FT /rpt_type=TANDEM FT /note="homology = 93.8%, counts = 16" FT repeat_region 6919549..6919593 FT /note="ATCT repeat" FT repeat_region complement(6919598..6919863) FT /rpt_family="ALU" FT /note="89% identity: matches 877..1141 of consensus" FT repeat_region 6919665..6919866 FT /rpt_family="L1" FT /note="83% identity: matches 383..588 of consensus" FT exon 6920342..6920380 FT /note="MZEF prediction, score = 0.836" FT exon 6920355..6920380 FT /note="XPOUND prediction, score = 0.826" FT repeat_region 6920356..6920402 FT /rpt_family="ALU" FT /note="93% identity: matches 76..122 of consensus" FT repeat_region complement(6920356..6920402) FT /rpt_family="L1" FT /note="93% identity: matches 474..520 of consensus" FT repeat_region 6920356..6920486 FT /rpt_type=INVERTED FT /note="IR5', 83% complementary to IR5 (53556..53686)" FT repeat_region 6920414..6920537 FT /rpt_family="ALU" FT /note="90% identity: matches 279..402 of consensus" FT repeat_region complement(6920437..6920537) FT /rpt_family="L1" FT /note="90% identity: matches 186..286 of consensus" FT repeat_region 6922117..6922131 FT /note="ATGA repeat" FT repeat_region 6922189..6922200 FT /note="GCT repeat" FT repeat_region 6922471..6922589 FT /rpt_family="ALU" FT /note="85% identity: matches 7..125 of consensus" FT repeat_region complement(6922479..6922517) FT /rpt_family="L1" FT /note="97% identity: matches 386..424 of consensus" FT repeat_region 6922577..6922692 FT /rpt_family="ALU" FT /note="87% identity: matches 105..219 of consensus" FT repeat_region complement(6922577..6922692) FT /rpt_family="L1" FT /note="82% identity: matches 215..330 of consensus" FT repeat_region 6922684..6922750 FT /rpt_family="ALU" FT /note="89% identity: matches 218..284 of consensus" FT exon 6923034..6923044 FT /note="XPOUND prediction, score = 0.878" FT exon 6923890..6923996 FT /note="MZEF prediction, score = 0.677" FT exon complement(6924329..6924492) FT /note="MZEF prediction, score = 0.713" FT repeat_region 6925404..6925459 FT /rpt_family="ccccctt repeat" FT /rpt_type=TANDEM FT /note="homology = 78.6%, counts = 8" FT exon 6925946..6926033 FT /note="XPOUND prediction, score = 0.350" FT repeat_region 6927090..6927140 FT /note="TCTA repeat" FT repeat_region 6927090..6927141 FT /rpt_family="tcta repeat" FT /rpt_type=TANDEM FT /note="homology = 98.1%, counts = 13" FT repeat_region 6927142..6927317 FT /rpt_family="L1" FT /note="82% identity: matches 155..330 of consensus" FT repeat_region complement(6927142..6927415) FT /rpt_family="ALU" FT /note="83% identity: matches 14..287 of consensus" FT repeat_region 6927331..6927430 FT /rpt_family="THR" FT /note="83% identity: matches 2..101 of consensus" FT exon complement(6928215..6928347) FT /note="MZEF prediction, score = 0.907" FT exon 6928230..6928360 FT /note="GENSCAN prediction, score = 4.17" FT exon 6930191..6930229 FT /note="XPOUND prediction, score = 0.556" FT repeat_region 6930470..6930595 FT /rpt_family="tatatataa repeat" FT /rpt_type=TANDEM FT /note="homology = 62.7%, counts = 14" FT repeat_region 6930494..6930605 FT /rpt_type=INVERTED FT /note="IR6, 79% complementary to IR6' (65268..65379)" FT repeat_region 6930658..6930769 FT /rpt_type=INVERTED FT /note="IR6', 79% complementary to IR6 (65104..65215)" FT repeat_region 6930674..6930761 FT /rpt_family="aattataatat repeat" FT /rpt_type=TANDEM FT /note="homology = 71.6%, counts = 8" FT repeat_region 6931494..6931507 FT /note="AT repeat" FT repeat_region complement(6931541..6931658) FT /rpt_family="ALU" FT /note="83% identity: matches 929..1046 of consensus" FT repeat_region complement(6931614..6931789) FT /rpt_family="ALU" FT /note="85% identity: matches 245..417 of consensus" FT repeat_region 6931614..6931789 FT /rpt_family="L1" FT /note="86% identity: matches 748..924 of consensus" FT exon 6931945..6931976 FT /note="XPOUND prediction, score = 0.285" FT exon 6931976..6932192 FT /note="GENSCAN prediction, score = 4.88" FT exon 6932778..6932830 FT /note="XPOUND prediction, score = 0.563" FT repeat_region 6933847..6933861 FT /note="TTTA repeat" FT repeat_region 6933848..6934153 FT /rpt_type=INVERTED FT /note="IR7, 75% complementary to IR7' (68809..69109)" FT repeat_region complement(6933868..6933984) FT /rpt_family="ALU" FT /note="82% identity: matches 165..281 of consensus" FT repeat_region 6933944..6934147 FT /rpt_family="L1" FT /note="83% identity: matches 388..591 of consensus" FT repeat_region complement(6933947..6934136) FT /rpt_family="ALU" FT /note="86% identity: matches 642..828 of consensus" FT repeat_region 6934199..6934499 FT /rpt_type=INVERTED FT /note="IR7', 75% complementary to IR7 (68458..68763)" FT repeat_region 6934204..6934317 FT /rpt_family="ALU" FT /note="87% identity: matches 5..118 of consensus" FT repeat_region complement(6934205..6934313) FT /rpt_family="L1" FT /note="83% identity: matches 413..521 of consensus" FT repeat_region 6934346..6934471 FT /rpt_family="ALU" FT /note="92% identity: matches 147..272 of consensus" FT repeat_region complement(6934354..6934471) FT /rpt_family="L1" FT /note="88% identity: matches 253..370 of consensus" FT repeat_region complement(6934574..6934759) FT /rpt_family="ALU" FT /note="93% identity: matches 150..335 of consensus" FT repeat_region 6934574..6934761 FT /rpt_family="L1" FT /note="86% identity: matches 337..526 of consensus" FT exon complement(6934663..6934808) FT /note="MZEF prediction, score = 0.526" FT repeat_region 6935435..6935561 FT /rpt_family="L1" FT /note="86% identity: matches 161..286 of consensus" FT repeat_region complement(6935435..6935584) FT /rpt_family="ALU" FT /note="86% identity: matches 435..583 of consensus" FT exon 6936601..6936708 FT /note="MZEF prediction, score = 0.856" FT exon 6937165..6937213 FT /note="MZEF prediction, score = 0.902" FT exon complement(6937230..6937283) FT /note="MZEF prediction, score = 0.514" FT exon complement(6937580..6937687) FT /note="MZEF prediction, score = 0.998" FT repeat_region 6937708..6937726 FT /note="ATTTA repeat" FT repeat_region complement(6937723..6938011) FT /rpt_family="ALU" FT /note="87% identity: matches 1..290 of consensus" FT repeat_region 6937879..6938000 FT /rpt_family="L1" FT /note="90% identity: matches 464..585 of consensus" FT repeat_region 6938182..6938280 FT /rpt_family="aataaatatat repeat" FT /rpt_type=TANDEM FT /note="homology = 66.7%, counts = 9" FT exon 6938766..6938807 FT /note="MZEF prediction, score = 0.772" FT repeat_region 6939055..6939088 FT /rpt_type=INVERTED FT /note="IR8, 85% complementary to IR8' (73722..73755)" FT repeat_region 6939112..6939145 FT /rpt_type=INVERTED FT /note="IR8', 85% complementary to IR8 (73665..73698)" FT repeat_region complement(6939176..6939510) FT /rpt_family="MER1" FT /note="84% identity: matches 75..411 of consensus" FT repeat_region 6939955..6940070 FT /rpt_family="ttcc repeat" FT /rpt_type=TANDEM FT /note="homology = 88.8%, counts = 29" FT repeat_region 6939960..6939979 FT /note="ACCT repeat" FT repeat_region 6939980..6940062 FT /note="TCCT repeat" FT repeat_region 6940068..6940080 FT /note="TC repeat" FT repeat_region 6940093..6940106 FT /note="TTTC repeat" FT exon 6940117..6940431 FT /note="MZEF prediction, score = 0.693" FT repeat_region 6940124..6940278 FT /rpt_family="L1" FT /note="80% identity: matches 175..330 of consensus" FT repeat_region complement(6940125..6940155) FT /rpt_family="ALU" FT /note="100% identity: matches 220..250 of consensus" FT repeat_region complement(6940167..6940278) FT /rpt_family="ALU" FT /note="88% identity: matches 105..215 of consensus" FT repeat_region complement(6940253..6940309) FT /rpt_family="L1" FT /note="89% identity: matches 201..257 of consensus" FT repeat_region 6940258..6940312 FT /rpt_family="L1" FT /note="90% identity: matches 464..518 of consensus" FT repeat_region 6940795..6940900 FT /rpt_type=INVERTED FT /note="IR9, 97% complementary to IR9' (75984..76087)" FT exon 6940915..6940930 FT /note="XPOUND prediction, score = 0.294" FT repeat_region complement(6941066..6941158) FT /rpt_family="ALU" FT /note="91% identity: matches 176..268 of consensus" FT repeat_region 6941080..6941139 FT /rpt_family="L1" FT /note="90% identity: matches 192..251 of consensus" FT repeat_region complement(6941158..6941284) FT /rpt_family="ALU" FT /note="87% identity: matches 321..447 of consensus" FT repeat_region 6941167..6941284 FT /rpt_family="L1" FT /note="83% identity: matches 301..414 of consensus" FT repeat_region complement(6941352..6941396) FT /rpt_family="L1" FT /note="93% identity: matches 228..273 of consensus" FT repeat_region 6941374..6941477 FT /rpt_type=INVERTED FT /note="IR9', 97% complementary to IR9 (75405..75510)" FT exon 6941656..6941721 FT /note="XPOUND prediction, score = 0.529" FT repeat_region 6941826..6941861 FT /rpt_family="gtgtct repeat" FT /rpt_type=TANDEM FT /note="homology = 86.1%, counts = 6" FT repeat_region 6941853..6941865 FT /note="TC repeat" FT repeat_region 6941866..6941876 FT /note="TG repeat" FT repeat_region 6942283..6942322 FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 20" FT repeat_region 6942283..6942322 FT /note="GT repeat" FT repeat_region 6942396..6942461 FT /rpt_family="tcttttttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 74.2%, counts = 6" FT exon 6942460..6942491 FT /note="XPOUND prediction, score = 0.257" FT exon 6942524..6942570 FT /note="XPOUND prediction, score = 0.368" FT repeat_region 6942869..6942882 FT /note="TTA repeat" FT exon 6943054..6943157 FT /note="MZEF prediction, score = 0.692" FT exon complement(6943215..6943259) FT /note="MZEF prediction, score = 0.569" FT repeat_region 6943427..6943662 FT /rpt_family="ALU" FT /note="98% identity: matches 1..236 of consensus" FT exon complement(6946931..6946989) FT /note="MZEF prediction, score = 0.800" FT misc_feature 6948949..6949725 FT /note="CpG_island (%GC=66.5, o/e=0.76, #CpGs=59)" FT exon 6948953..6948984 FT /note="XPOUND prediction, score = 0.322" FT repeat_region 6949097..6949150 FT /rpt_family="ALU" FT /note="88% identity: matches 39..92 of consensus" FT repeat_region 6949187..6949268 FT /rpt_family="ALU" FT /note="89% identity: matches 10..93 of consensus" FT repeat_region 6949259..6949347 FT /rpt_family="ALU" FT /note="89% identity: matches 5..93 of consensus" FT exon 6949324..6949366 FT /note="XPOUND prediction, score = 0.388" FT repeat_region 6949368..6949816 FT /rpt_family="ALU" FT /note="93% identity: matches 6..452 of consensus" FT repeat_region 6949670..6949699 FT /rpt_type=INVERTED FT /note="IR10, 86% complementary to IR10' (84646..84675)" FT exon 6949783..6949820 FT /note="XPOUND prediction, score = 0.453" FT repeat_region 6950036..6950065 FT /rpt_type=INVERTED FT /note="IR10', 86% complementary to IR10 (84280..84309)" FT STS 6950300..6950499 FT /standard_name="WI-9749 (D22S606), Map: 828_A_4, Homo FT sapiens" FT /note="GenBank Accession Number: G05397" FT exon 6950576..6950598 FT /note="XPOUND prediction, score = 0.866" FT repeat_region complement(6951067..6951180) FT /rpt_family="L1" FT /note="86% identity: matches 5..119 of consensus" FT repeat_region complement(6951232..6951269) FT /rpt_family="L1" FT /note="94% identity: matches 14..51 of consensus" FT repeat_region complement(6951274..6951319) FT /rpt_family="L1" FT /note="93% identity: matches 168..213 of consensus" FT repeat_region 6952247..6952261 FT /note="AGCAA repeat" FT exon 6952249..6952268 FT /note="XPOUND prediction, score = 0.481" FT exon 6952273..6952286 FT /note="XPOUND prediction, score = 0.293" FT repeat_region 6952399..6952450 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 73.1%, counts = 26" FT repeat_region 6952412..6952431 FT /note="TA repeat" FT repeat_region 6952459..6952726 FT /rpt_family="L1" FT /note="86% identity: matches 161..424 of consensus" FT repeat_region complement(6952459..6952736) FT /rpt_family="ALU" FT /note="89% identity: matches 139..417 of consensus" FT exon complement(6953647..6953694) FT /note="MZEF prediction, score = 0.933" FT exon 6955416..6955596 FT /note="GENSCAN prediction, score = 5.35" FT repeat_region 6956017..6956069 FT /rpt_family="L1" FT /note="94% identity: matches 356..408 of consensus" FT repeat_region 6956194..6956349 FT /rpt_family="L1" FT /note="91% identity: matches 3003..3157 of consensus" FT repeat_region 6957576..6957589 FT /note="CAC repeat" FT exon 6957945..6957978 FT /note="XPOUND prediction, score = 0.301" FT repeat_region 6958313..6958394 FT /rpt_type=INVERTED FT /note="IR11, 81% complementary to IR11' (93466..93547)" FT repeat_region 6958313..6958426 FT /rpt_family="ALU" FT /note="85% identity: matches 1063..1176 of consensus" FT repeat_region complement(6958314..6958430) FT /rpt_family="L1" FT /note="84% identity: matches 469..585 of consensus" FT repeat_region 6958379..6958585 FT /rpt_family="ALU" FT /note="87% identity: matches 75..279 of consensus" FT repeat_region complement(6958381..6958585) FT /rpt_family="L1" FT /note="80% identity: matches 246..450 of consensus" FT repeat_region complement(6958703..6958769) FT /rpt_family="ALU" FT /note="92% identity: matches 207..273 of consensus" FT repeat_region 6958711..6958770 FT /rpt_family="L1" FT /note="88% identity: matches 169..228 of consensus" FT repeat_region 6958856..6958937 FT /rpt_type=INVERTED FT /note="IR11', 81% complementary to IR11 (92923..93004)" FT repeat_region complement(6958859..6958943) FT /rpt_family="ALU" FT /note="89% identity: matches 470..554 of consensus" FT repeat_region 6958892..6958948 FT /rpt_family="THR" FT /note="89% identity: matches 45..101 of consensus" FT exon 6959491..6959552 FT /note="MZEF prediction, score = 0.560" FT exon complement(6959906..6960185) FT /note="MZEF prediction, score = 0.624" FT repeat_region complement(6960303..6960558) FT /rpt_family="ALU" FT /note="99% identity: matches 1..256 of consensus" FT STS 6960329..6960577 FT /standard_name="A005A28 (D12S8), Map: 6p11, Homo sapiens" FT /note="GenBank Accession Number: G20220" FT repeat_region 6962126..6962138 FT /note="ATTG repeat" FT repeat_region 6964041..6964053 FT /note="TAT repeat" FT repeat_region 6964083..6964096 FT /note="ATTTT repeat" FT repeat_region complement(6964104..6964228) FT /rpt_family="L1" FT /note="93% identity: matches 1259..1383 of consensus" FT exon 6964122..6964143 FT /note="XPOUND prediction, score = 0.816" FT repeat_region complement(6964255..6964568) FT /rpt_family="L1" FT /note="92% identity: matches 13..325 of consensus" FT repeat_region 6964572..6964616 FT /rpt_family="ALU" FT /note="100% identity: matches 944..988 of consensus" FT repeat_region complement(6964572..6964617) FT /rpt_family="L1" FT /note="93% identity: matches 477..522 of consensus" FT repeat_region 6964595..6964791 FT /rpt_type=INVERTED FT /note="IR12, 90% complementary to IR12' (100801..100996)" FT repeat_region 6964633..6964781 FT /rpt_family="ALU" FT /note="94% identity: matches 133..281 of consensus" FT repeat_region complement(6964633..6964781) FT /rpt_family="L1" FT /note="87% identity: matches 245..393 of consensus" FT repeat_region complement(6964826..6964946) FT /rpt_family="L1" FT /note="90% identity: matches 168..288 of consensus" FT repeat_region 6964827..6964931 FT /rpt_family="ALU" FT /note="96% identity: matches 732..836 of consensus" FT repeat_region 6965291..6965306 FT /note="AT repeat" FT repeat_region 6965291..6965366 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 65.8%, counts = 38" FT repeat_region 6965476..6965486 FT /note="TG repeat" FT exon 6965647..6965657 FT /note="XPOUND prediction, score = 0.210" FT exon 6965660..6965697 FT /note="XPOUND prediction, score = 0.216" FT exon 6966083..6966167 FT /note="MZEF prediction, score = 0.640" FT repeat_region 6966191..6966386 FT /rpt_type=INVERTED FT /note="IR12', 90% complementary to IR12 (99205..99401)" FT repeat_region 6966202..6966386 FT /rpt_family="L1" FT /note="89% identity: matches 246..431 of consensus" FT repeat_region complement(6966202..6966464) FT /rpt_family="ALU" FT /note="91% identity: matches 6..268 of consensus" FT repeat_region 6966385..6966469 FT /rpt_family="L1" FT /note="93% identity: matches 442..526 of consensus" FT repeat_region 6967146..6967406 FT /rpt_family="ALU" FT /note="86% identity: matches 139..399 of consensus" FT repeat_region complement(6967156..6967410) FT /rpt_family="L1" FT /note="83% identity: matches 174..424 of consensus" FT repeat_region 6967193..6967413 FT /rpt_type=INVERTED FT /note="IR13, 80% complementary to IR13' (103575..103794)" FT exon 6967602..6967648 FT /note="XPOUND prediction, score = 0.340" FT repeat_region 6968209..6968286 FT /rpt_family="ALU" FT /note="85% identity: matches 16..93 of consensus" FT repeat_region 6968937..6968951 FT /note="TG repeat" FT repeat_region 6968952..6969221 FT /rpt_family="L1" FT /note="82% identity: matches 158..424 of consensus" FT repeat_region complement(6968952..6969235) FT /rpt_family="ALU" FT /note="84% identity: matches 1..283 of consensus" FT repeat_region 6968965..6969184 FT /rpt_type=INVERTED FT /note="IR13', 80% complementary to IR13 (101803..102023)" FT exon 6971772..6971781 FT /note="XPOUND prediction, score = 0.303" FT repeat_region 6972231..6972250 FT /rpt_type=INVERTED FT /note="IR14, 95% complementary to IR14' (106926..106945)" FT repeat_region 6972241..6972256 FT /note="GT repeat" FT repeat_region 6972241..6972296 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 71.4%, counts = 28" FT repeat_region 6972257..6972267 FT /note="AT repeat" FT repeat_region 6972316..6972327 FT /note="AC repeat" FT repeat_region 6972316..6972335 FT /rpt_type=INVERTED FT /note="IR14', 95% complementary to IR14 (106841..106860)" FT repeat_region complement(6973230..6973284) FT /rpt_family="ALU" FT /note="89% identity: matches 395..449 of consensus" FT repeat_region complement(6973296..6973329) FT /rpt_family="ALU" FT /note="97% identity: matches 14..47 of consensus" FT repeat_region 6974357..6974651 FT /rpt_type=INVERTED FT /note="IR15, 81% complementary to IR15' (110376..110668)" FT repeat_region 6974374..6974641 FT /rpt_family="L1" FT /note="82% identity: matches 157..422 of consensus" FT repeat_region complement(6974374..6974648) FT /rpt_family="ALU" FT /note="84% identity: matches 144..421 of consensus" FT exon 6974766..6974939 FT /note="MZEF prediction, score = 0.757" FT exon 6975761..6975806 FT /note="XPOUND prediction, score = 0.221" FT repeat_region 6975766..6976058 FT /rpt_type=INVERTED FT /note="IR15', 81% complementary to IR15 (108967..109261)" FT repeat_region 6975770..6976021 FT /rpt_family="ALU" FT /note="85% identity: matches 145..400 of consensus" FT repeat_region complement(6975774..6976029) FT /rpt_family="L1" FT /note="83% identity: matches 169..424 of consensus" FT repeat_region 6976039..6976052 FT /note="AAAAT repeat" FT exon 6976120..6976133 FT /note="XPOUND prediction, score = 0.225" FT exon complement(6976207..6976281) FT /note="MZEF prediction, score = 0.709" FT repeat_region complement(6977012..6977126) FT /rpt_family="ALU" FT /note="84% identity: matches 22..136 of consensus" FT repeat_region 6977015..6977076 FT /rpt_family="L1" FT /note="87% identity: matches 464..525 of consensus" FT exon 6978470..6978507 FT /note="XPOUND prediction, score = 0.364" FT exon 6979728..6979756 FT /note="XPOUND prediction, score = 0.243" FT repeat_region 6980355..6980369 FT /note="TTG repeat" FT repeat_region 6980387..6980400 FT /note="ATGTG repeat" FT exon 6980925..6981118 FT /note="GENSCAN prediction, score = 7.07" FT exon 6982262..6982314 FT /note="XPOUND prediction, score = 0.370" FT repeat_region 6982493..6982534 FT /rpt_type=INVERTED FT /note="IR16, 80% complementary to IR16' (118168..118210)" FT repeat_region 6983465..6983543 FT /rpt_family="ALU" FT /note="87% identity: matches 401..480 of consensus" FT repeat_region complement(6983466..6983501) FT /rpt_family="L1" FT /note="97% identity: matches 550..585 of consensus" FT repeat_region 6983558..6983600 FT /rpt_type=INVERTED FT /note="IR16', 80% complementary to IR16 (117103..117144)" FT repeat_region 6983574..6983613 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 20" FT repeat_region 6983574..6983613 FT /note="AC repeat" FT repeat_region 6983785..6983872 FT /rpt_family="ttattttt repeat" FT /rpt_type=TANDEM FT /note="homology = 69.3%, counts = 11" FT exon 6984130..6984404 FT /note="MZEF prediction, score = 0.944" FT exon 6984166..6984404 FT /note="GENSCAN prediction, score = 27.04" FT exon 6984181..6984404 FT /note="XPOUND prediction, score = 0.910" FT exon complement(6984703..6984783) FT /note="MZEF prediction, score = 0.525" FT repeat_region 6985709..6985790 FT /rpt_family="L1" FT /note="86% identity: matches 245..326 of consensus" FT repeat_region complement(6985709..6985980) FT /rpt_family="ALU" FT /note="82% identity: matches 10..281 of consensus" FT repeat_region 6985858..6985963 FT /rpt_family="L1" FT /note="87% identity: matches 464..569 of consensus" FT repeat_region 6985946..6985980 FT /rpt_type=INVERTED FT /note="IR17, 82% complementary to IR17' (122495..122529)" FT repeat_region 6986206..6986251 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 78.3%, counts = 23" FT exon 6986344..6986666 FT /note="GENSCAN prediction, score = 20.05" FT exon 6986377..6986498 FT /note="XPOUND prediction, score = 0.633" FT exon 6986593..6986706 FT /note="GENSCAN prediction, score = 3.06" FT repeat_region 6987885..6987919 FT /rpt_type=INVERTED FT /note="IR17', 82% complementary to IR17 (120556..120590)" FT repeat_region 6987995..6988174 FT /rpt_type=INVERTED FT /note="IR18, 75% complementary to IR18' (124385..124562)" FT repeat_region 6988040..6988145 FT /rpt_family="ALU" FT /note="83% identity: matches 1023..1128 of consensus" FT STS 6988606..6988778 FT /standard_name="CHLC.GGAT12H06.P33479 (D7S2653), Map: 7, FT Homo sapiens" FT /note="GenBank Accession Number: G10183" FT repeat_region 6988656..6988707 FT /note="CCAT repeat" FT repeat_region 6988656..6988711 FT /rpt_family="ccat repeat" FT /rpt_type=TANDEM FT /note="homology = 98.2%, counts = 14" FT exon complement(6988990..6989101) FT /note="MZEF prediction, score = 0.740" FT repeat_region 6989775..6989952 FT /rpt_type=INVERTED FT /note="IR18', 75% complementary to IR18 (122605..122784)" FT repeat_region complement(6989809..6989919) FT /rpt_family="ALU" FT /note="84% identity: matches 471..581 of consensus" FT repeat_region 6989976..6990078 FT /rpt_family="L1" FT /note="83% identity: matches 834..936 of consensus" FT repeat_region complement(6990024..6990078) FT /rpt_family="ALU" FT /note="92% identity: matches 144..198 of consensus" FT exon 6990416..6990524 FT /note="GENSCAN prediction, score = 5.74" FT /note="MZEF prediction, score = 0.995" FT exon 6990482..6990524 FT /note="XPOUND prediction, score = 0.316" FT exon 6990998..6991018 FT /note="XPOUND prediction, score = 0.288" FT repeat_region complement(6991097..6991204) FT /rpt_family="ALU" FT /note="85% identity: matches 167..271 of consensus" FT exon 6991102..6991240 FT /note="MZEF prediction, score = 0.739" FT repeat_region complement(6991178..6991245) FT /rpt_family="ALU" FT /note="86% identity: matches 133..200 of consensus" FT exon 6991272..6991455 FT /note="MZEF prediction, score = 0.982" FT exon 6991445..6991455 FT /note="XPOUND prediction, score = 0.399" FT repeat_region 6991793..6991851 FT /rpt_family="ALU" FT /note="89% identity: matches 40..98 of consensus" FT exon complement(6992710..6992801) FT /note="MZEF prediction, score = 0.880" FT repeat_region 6993169..6993180 FT /note="TGG repeat" FT repeat_region 6993758..6993772 FT /note="TTTC repeat" FT repeat_region 6994076..6994205 FT /rpt_family="MER1" FT /note="86% identity: matches 262..391 of consensus" FT exon 6995161..6995207 FT /note="XPOUND prediction, score = 0.665" FT repeat_region 6995329..6995368 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 90.0%, counts = 20" FT repeat_region 6995353..6995369 FT /note="AC repeat" FT repeat_region complement(6995690..6995967) FT /rpt_family="ALU" FT /note="91% identity: matches 1..281 of consensus" FT repeat_region 6995698..6995967 FT /rpt_family="L1" FT /note="90% identity: matches 253..526 of consensus" FT repeat_region complement(6995994..6996091) FT /rpt_family="L1" FT /note="85% identity: matches 83..181 of consensus" FT repeat_region 6998514..6998789 FT /rpt_family="ALU" FT /note="86% identity: matches 1..274 of consensus" FT repeat_region complement(6998528..6998774) FT /rpt_family="L1" FT /note="83% identity: matches 182..424 of consensus" FT exon 6998572..6998581 FT /note="XPOUND prediction, score = 0.209" FT exon 6998590..6998617 FT /note="XPOUND prediction, score = 0.243" FT repeat_region 6998796..6998843 FT /rpt_family="caaa repeat" FT /rpt_type=TANDEM FT /note="homology = 79.2%, counts = 12" FT repeat_region 6998814..6998826 FT /note="AACA repeat" FT repeat_region 6998827..6998841 FT /note="CAA repeat" FT repeat_region 6998953..6998978 FT /rpt_type=INVERTED FT /note="IR19, 84% complementary to IR19' (134787..134812)" FT exon complement(6999153..6999261) FT /note="MZEF prediction, score = 0.742" FT repeat_region 6999385..6999665 FT /rpt_family="ALU" FT /note="96% identity: matches 1..281 of consensus" FT repeat_region complement(6999385..6999665) FT /rpt_family="L1" FT /note="91% identity: matches 245..526 of consensus" FT misc_feature 6999388..6999661 FT /note="CpG_island (%GC=64.2, o/e=0.83, #CpGs=25)" FT exon 6999744..6999766 FT /note="XPOUND prediction, score = 0.255" FT repeat_region 7000177..7000202 FT /rpt_type=INVERTED FT /note="IR19', 84% complementary to IR19 (133563..133588)" FT repeat_region complement(7001895..7002184) FT /rpt_family="ALU" FT /note="85% identity: matches 156..443 of consensus" FT repeat_region 7001896..7001911 FT /note="TTTG repeat" FT repeat_region 7001944..7002178 FT /rpt_family="L1" FT /note="84% identity: matches 194..424 of consensus" FT exon 7002728..7002806 FT /note="MZEF prediction, score = 0.842" FT repeat_region 7002902..7003151 FT /rpt_family="L1" FT /note="82% identity: matches 184..424 of consensus" FT repeat_region complement(7002902..7003154) FT /rpt_family="ALU" FT /note="84% identity: matches 314..560 of consensus" FT repeat_region complement(7005153..7005284) FT /rpt_family="L1" FT /note="93% identity: matches 466..597 of consensus" FT repeat_region 7005165..7005435 FT /rpt_family="ALU" FT /note="90% identity: matches 877..1146 of consensus" FT exon complement(7007177..7007282) FT /note="MZEF prediction, score = 0.611" FT exon 7008123..7008138 FT /note="XPOUND prediction, score = 0.221" FT exon 7008616..7008771 FT /note="GENSCAN prediction, score = 5.46" FT exon complement(7008843..7008859) FT /note="XPOUND prediction, score = 0.371" FT exon complement(7008935..7008947) FT /note="XPOUND prediction, score = 0.218" FT exon 7009099..7009225 FT /note="MZEF prediction, score = 0.923" FT repeat_region 7010310..7010321 FT /note="AAC repeat" FT repeat_region 7010771..7010886 FT /rpt_family="ALU" FT /note="90% identity: matches 466..584 of consensus" FT repeat_region complement(7010771..7010886) FT /rpt_family="L1" FT /note="86% identity: matches 469..587 of consensus" FT repeat_region 7010906..7010997 FT /rpt_family="ALU" FT /note="83% identity: matches 137..228 of consensus" FT repeat_region 7010959..7011043 FT /rpt_family="ALU" FT /note="90% identity: matches 230..313 of consensus" FT exon 7011698..7011879 FT /note="GENSCAN prediction, score = 11.27" FT /note="MZEF prediction, score = 0.959" FT exon 7011757..7011879 FT /note="XPOUND prediction, score = 0.746" FT repeat_region complement(7012083..7012137) FT /rpt_family="ALU" FT /note="92% identity: matches 396..450 of consensus" FT repeat_region complement(7012269..7012341) FT /rpt_family="ALU" FT /note="86% identity: matches 374..446 of consensus" FT exon 7012615..7012655 FT /note="XPOUND prediction, score = 0.451" FT exon 7013788..7014001 FT /note="GENSCAN prediction, score = 2.37" FT repeat_region 7014231..7014243 FT /note="GTTT repeat" FT exon complement(7014663..7014805) FT /note="MZEF prediction, score = 0.726" FT repeat_region 7014916..7014953 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 19" FT repeat_region 7014916..7014953 FT /note="AC repeat" FT exon 7015853..7015929 FT /note="MZEF prediction, score = 0.995" FT repeat_region complement(7016146..7016415) FT /rpt_family="ALU" FT /note="92% identity: matches 314..583 of consensus" FT repeat_region 7016146..7016415 FT /rpt_family="L1" FT /note="89% identity: matches 245..515 of consensus" FT repeat_region 7016445..7016711 FT /rpt_family="L1" FT /note="81% identity: matches 161..424 of consensus" FT repeat_region complement(7016445..7016714) FT /rpt_family="ALU" FT /note="85% identity: matches 314..583 of consensus" FT repeat_region 7016949..7017002 FT /rpt_family="L1" FT /note="90% identity: matches 307..360 of consensus" FT repeat_region complement(7016954..7017207) FT /rpt_family="ALU" FT /note="81% identity: matches 934..1186 of consensus" FT repeat_region 7017132..7017233 FT /rpt_family="L1" FT /note="83% identity: matches 831..932 of consensus" FT repeat_region 7017483..7017500 FT /note="AAT repeat" FT repeat_region 7018082..7018181 FT /rpt_family="MER7" FT /note="85% identity: matches 34..133 of consensus" FT repeat_region 7018217..7018274 FT /rpt_family="MER7" FT /note="89% identity: matches 196..253 of consensus" FT exon 7019465..7019478 FT /note="XPOUND prediction, score = 0.373" FT exon 7019573..7019582 FT /note="XPOUND prediction, score = 0.221" FT repeat_region 7019676..7019801 FT /rpt_family="aaatattataatataata repeat" FT /rpt_type=TANDEM FT /note="homology = 68.3%, counts = 7" FT repeat_region 7019695..7019743 FT /rpt_type=INVERTED FT /note="IR20, 95% complementary to IR20' (154355..154403)" FT repeat_region 7019745..7019793 FT /rpt_type=INVERTED FT /note="IR20', 95% complementary to IR20 (154305..154353)" FT repeat_region 7019832..7019845 FT /note="ATAA repeat" FT repeat_region complement(7020693..7020886) FT /rpt_family="L1" FT /note="82% identity: matches 940..1133 of consensus" FT repeat_region 7021121..7021141 FT /note="TG repeat" FT repeat_region 7021121..7021170 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 74.0%, counts = 25" FT repeat_region 7021142..7021153 FT /note="AT repeat" FT repeat_region 7021170..7021250 FT /rpt_family="L1" FT /note="90% identity: matches 161..241 of consensus" FT repeat_region complement(7021193..7021433) FT /rpt_family="ALU" FT /note="86% identity: matches 11..258 of consensus" FT repeat_region 7021312..7021435 FT /rpt_family="L1" FT /note="91% identity: matches 464..587 of consensus" FT repeat_region complement(7021479..7022216) FT /rpt_family="L1" FT /note="80% identity: matches 15..758 of consensus" FT repeat_region complement(7022176..7022299) FT /rpt_family="L1" FT /note="86% identity: matches 19..143 of consensus" FT repeat_region complement(7022313..7022637) FT /rpt_family="L1" FT /note="79% identity: matches 111..431 of consensus" FT repeat_region complement(7022668..7023112) FT /rpt_family="L1" FT /note="83% identity: matches 462..907 of consensus" FT repeat_region complement(7023128..7023204) FT /rpt_family="L1" FT /note="85% identity: matches 126..202 of consensus" FT repeat_region complement(7023204..7023483) FT /rpt_family="L1" FT /note="84% identity: matches 259..539 of consensus" FT repeat_region 7023551..7023760 FT /rpt_family="ttttttttattttta repeat" FT /rpt_type=TANDEM FT /note="homology = 60.0%, counts = 14" FT repeat_region complement(7023617..7024000) FT /rpt_family="L1" FT /note="80% identity: matches 5..384 of consensus" FT repeat_region complement(7024114..7024282) FT /rpt_family="L1" FT /note="82% identity: matches 411..584 of consensus" FT repeat_region 7024269..7024366 FT /rpt_family="tttttagttttatt repeat" FT /rpt_type=TANDEM FT /note="homology = 69.4%, counts = 7" FT repeat_region complement(7024343..7024472) FT /rpt_family="L1" FT /note="96% identity: matches 1056..1186 of consensus" FT repeat_region complement(7024496..7025011) FT /rpt_family="L1" FT /note="94% identity: matches 506..1021 of consensus" FT repeat_region complement(7025011..7025170) FT /rpt_family="L1" FT /note="81% identity: matches 256..411 of consensus" FT repeat_region complement(7025229..7025349) FT /rpt_family="L1" FT /note="82% identity: matches 65..183 of consensus" FT exon complement(7025843..7026035) FT /note="MZEF prediction, score = 0.947" FT repeat_region 7025932..7026206 FT /rpt_family="ALU" FT /note="83% identity: matches 3..276 of consensus" FT repeat_region complement(7025943..7026206) FT /rpt_family="L1" FT /note="82% identity: matches 159..418 of consensus" FT exon 7026061..7026360 FT /note="MZEF prediction, score = 0.733" FT repeat_region complement(7026273..7026307) FT /rpt_family="L1" FT /note="97% identity: matches 284..318 of consensus" FT repeat_region complement(7026379..7026434) FT /rpt_family="L1" FT /note="94% identity: matches 162..217 of consensus" FT repeat_region complement(7026523..7026656) FT /rpt_family="L1" FT /note="85% identity: matches 81..214 of consensus" FT repeat_region complement(7026809..7026894) FT /rpt_family="L1" FT /note="84% identity: matches 89..174 of consensus" FT repeat_region 7027300..7027435 FT /rpt_family="MER43" FT /note="81% identity: matches 1..136 of consensus" FT exon 7027662..7027680 FT /note="XPOUND prediction, score = 0.215" FT exon 7027848..7028014 FT /note="GENSCAN prediction, score = 4.86" FT exon 7028031..7028121 FT /note="XPOUND prediction, score = 0.534" FT exon 7028505..7028599 FT /note="GENSCAN prediction, score = 1.44" FT repeat_region 7029572..7029615 FT /rpt_type=INVERTED FT /note="IR21, 83% complementary to IR21' (165738..165780)" FT exon complement(7029974..7030023) FT /note="MZEF prediction, score = 0.568" FT repeat_region 7030422..7030537 FT /rpt_family="MER42" FT /note="85% identity: matches 1..119 of consensus" FT repeat_region 7031123..7031182 FT /rpt_family="ttta repeat" FT /rpt_type=TANDEM FT /note="homology = 90.0%, counts = 15" FT repeat_region 7031128..7031170 FT /rpt_type=INVERTED FT /note="IR21', 83% complementary to IR21 (164182..164225)" FT repeat_region 7031131..7031171 FT /note="TTTA repeat" FT repeat_region complement(7031177..7031448) FT /rpt_family="ALU" FT /note="86% identity: matches 868..1141 of consensus" FT repeat_region 7031195..7031448 FT /rpt_family="L1" FT /note="82% identity: matches 326..584 of consensus" FT repeat_region 7031589..7031619 FT /rpt_type=INVERTED FT /note="IR22, 90% complementary to IR22' (166244..166274)" FT repeat_region 7031600..7031651 FT /rpt_family="tata repeat" FT /rpt_type=TANDEM FT /note="homology = 75.0%, counts = 13" FT repeat_region 7031634..7031664 FT /rpt_type=INVERTED FT /note="IR22', 90% complementary to IR22 (166199..166229)" FT repeat_region 7031667..7031677 FT /note="TA repeat" FT repeat_region 7031667..7031702 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 18" FT repeat_region 7031678..7031703 FT /note="GT repeat" FT exon 7033985..7034004 FT /note="XPOUND prediction, score = 0.317" FT repeat_region 7034021..7034035 FT /note="TGG repeat" FT exon 7034120..7034136 FT /note="XPOUND prediction, score = 0.273" FT repeat_region complement(7034165..7034268) FT /rpt_family="L1" FT /note="83% identity: matches 2..107 of consensus" FT repeat_region complement(7034691..7034799) FT /rpt_family="L1" FT /note="84% identity: matches 194..302 of consensus" FT repeat_region complement(7034774..7034913) FT /rpt_family="L1" FT /note="81% identity: matches 339..477 of consensus" FT repeat_region 7035013..7035027 FT /note="TTTG repeat" FT repeat_region complement(7035131..7035299) FT /rpt_family="ALU" FT /note="84% identity: matches 471..637 of consensus" FT repeat_region 7035134..7035201 FT /rpt_family="L1" FT /note="94% identity: matches 264..330 of consensus" FT repeat_region 7035181..7035299 FT /rpt_family="L1" FT /note="86% identity: matches 464..582 of consensus" FT repeat_region complement(7035393..7035576) FT /rpt_family="L1" FT /note="81% identity: matches 551..739 of consensus" FT repeat_region complement(7035559..7035745) FT /rpt_family="L1" FT /note="81% identity: matches 315..501 of consensus" FT exon 7035565..7035575 FT /note="XPOUND prediction, score = 0.208" FT repeat_region complement(7035820..7035935) FT /rpt_family="L1" FT /note="86% identity: matches 24..138 of consensus" FT repeat_region complement(7036011..7036116) FT /rpt_family="L1" FT /note="88% identity: matches 1462..1567 of consensus" FT repeat_region 7036027..7036103 FT /rpt_family="L1" FT /note="85% identity: matches 107..183 of consensus" FT exon 7037021..7037035 FT /note="XPOUND prediction, score = 0.277" FT exon complement(7037021..7037124) FT /note="MZEF prediction, score = 0.609" FT repeat_region 7037995..7038009 FT /note="TTTA repeat" FT exon 7038030..7038046 FT /note="XPOUND prediction, score = 0.561" FT repeat_region 7038985..7039068 FT /rpt_family="tttattt repeat" FT /rpt_type=TANDEM FT /note="homology = 69.0%, counts = 12" FT repeat_region 7039637..7039716 FT /rpt_family="MER28" FT /note="88% identity: matches 161..240 of consensus" FT repeat_region 7039703..7039737 FT /rpt_family="MER28" FT /note="97% identity: matches 125..159 of consensus" FT repeat_region 7039745..7039815 FT /rpt_family="MER28" FT /note="90% identity: matches 89..159 of consensus" FT repeat_region 7040296..7040367 FT /rpt_family="tccctccc repeat" FT /rpt_type=TANDEM FT /note="homology = 80.6%, counts = 9" FT repeat_region 7040300..7040313 FT /note="TCCC repeat" FT repeat_region 7040324..7040340 FT /note="TCCC repeat" FT repeat_region 7040370..7040405 FT /note="TG repeat" FT repeat_region 7040370..7040433 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 92.2%, counts = 32" FT exon complement(7040466..7040576) FT /note="MZEF prediction, score = 0.851" FT repeat_region 7041228..7041332 FT /rpt_family="MER2" FT /note="89% identity: matches 12..116 of consensus" FT exon 7041848..7041881 FT /note="XPOUND prediction, score = 0.289" FT exon 7043136..7043180 FT /note="MZEF prediction, score = 0.912" FT exon 7044422..7044527 FT /note="GENSCAN prediction, score = 1.30" FT exon 7044482..7044513 FT /note="XPOUND prediction, score = 0.218" FT exon 7045203..7045219 FT /note="XPOUND prediction, score = 0.280" FT repeat_region 7045404..7045417 FT /note="TTCA repeat" FT exon 7046862..7046917 FT /note="GENSCAN prediction, score = 4.66" FT /note="MZEF prediction, score = 0.797" FT exon 7046890..7046917 FT /note="XPOUND prediction, score = 0.496" FT exon 7048905..7049043 FT /note="GENSCAN prediction, score = 0.85" FT exon 7049092..7049200 FT /note="MZEF prediction, score = 0.861" FT exon complement(7049358..7049411) FT /note="MZEF prediction, score = 0.771" FT exon complement(7049654..7049749) FT /note="MZEF prediction, score = 0.741" FT exon complement(7050655..7050764) FT /note="MZEF prediction, score = 0.609" FT exon complement(7051456..7051525) FT /note="MZEF prediction, score = 0.598" FT exon 7052328..7052343 FT /note="XPOUND prediction, score = 0.241" FT exon 7052708..7052797 FT /note="XPOUND prediction, score = 0.451" FT repeat_region 7052864..7052901 FT /note="AG repeat" FT repeat_region 7052864..7052909 FT /rpt_family="ag repeat" FT /rpt_type=TANDEM FT /note="homology = 95.7%, counts = 23" FT exon 7052930..7052968 FT /note="XPOUND prediction, score = 0.517" FT repeat_region 7054320..7054332 FT /note="TTCT repeat" FT repeat_region 7054975..7055162 FT /rpt_family="ALU" FT /note="88% identity: matches 226..412 of consensus" FT repeat_region complement(7054984..7055163) FT /rpt_family="L1" FT /note="83% identity: matches 174..353 of consensus" FT STS 7056711..7056989 FT /standard_name="SHGC-81035 (D11S4975), Map: 9, Homo FT sapiens" FT /note="GenBank Accession Number: G51668" FT exon 7056837..7056849 FT /note="XPOUND prediction, score = 0.473" FT misc_feature 7151191..7289533 FT /note="annotated region of clone" FT polyA_signal 7170885..7170890 FT polyA_site 7170932 FT misc_feature 7175286 FT /note="Clone_left_end: RP11-244O6" FT polyA_signal 7175626..7175631 FT polyA_site 7175648 FT mRNA join(AL354707.17:89966..90513,AL354707.17:125282..125442, FT AL354707.17:137909..138084,AL354707.17:146941..147055, FT AL445592.15:12847..13040,AL445592.15:43352..43401, FT AL445592.15:51300..51403,AL445592.15:56435..56572, FT AL513412.3:115535..115728,AL513412.3:118776..119014, FT AL513412.3:120954..121276,AL513412.3:125026..125134, FT AL513412.3:146308..146489,AL513412.3:148398..148611, FT AL513412.3:150463..150539,AL513412.3:181472..181527, FT AL513412.3:183702..183810,AL137020.13:134726..134911, FT AL137020.13:159107..159277,7165238..7165357, FT 7169798..7170932) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-002" FT /product="jumonji domain containing 2C" FT /note="match: cDNAs: Em:AB018323.1 Em:BC036628.1" FT /note="match: ESTs: Em:AA465547.1 Em:AI291331.1 FT Em:AI341811.1 Em:AI567803.1 Em:AL701604.1 Em:AW863772.1 FT Em:AW863776.1 Em:BE265181.1 Em:BE537899.1 Em:BE708144.1 FT Em:BM147746.1 Em:BM456170.1 Em:BU078862.1 Em:BU188813.1 FT Em:CA391723.1" FT mRNA join(AL354707.17:89966..90513,AL354707.17:125282..125442, FT AL354707.17:137909..138084,AL354707.17:146941..147055, FT AL445592.15:12847..13040,AL445592.15:43352..43401, FT AL445592.15:51300..51403,AL445592.15:56435..56572, FT AL513412.3:115535..115728,AL513412.3:118776..119014, FT AL513412.3:120954..121276,AL513412.3:125026..125134, FT AL513412.3:146308..146489,AL513412.3:148398..148611, FT AL513412.3:150463..150539,AL513412.3:181472..181527, FT AL513412.3:183702..183810,AL137020.13:134726..134911, FT AL137020.13:159107..159277,7165238..7165357, FT 7169798..7169890,7174553..7175648) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-001" FT /product="jumonji domain containing 2C" FT /note="match: cDNAs: Em:AB037901.1" FT /note="match: ESTs: Em:AA465547.1 Em:AA719275.1 FT Em:AI017056.1 Em:AI762198.1 Em:AI857847.1 Em:AL701604.1 FT Em:AW083815.1 Em:AW402136.1 Em:AW863772.1 Em:AW863776.1 FT Em:BE265181.1 Em:BE537899.1 Em:BE708144.1 Em:BF829543.1 FT Em:BM147746.1 Em:BM456170.1 Em:BU188813.1 Em:BU660755.1 FT Em:CA391723.1" FT CDS join(AL354707.17:125299..125442,AL354707.17:137909..138084, FT AL354707.17:146941..147055,AL445592.15:12847..13040, FT AL445592.15:43352..43401,AL445592.15:51300..51403, FT AL445592.15:56435..56572,AL513412.3:115535..115728, FT AL513412.3:118776..119014,AL513412.3:120954..121276, FT AL513412.3:125026..125134,AL513412.3:146308..146489, FT AL513412.3:148398..148611,AL513412.3:150463..150539, FT AL513412.3:181472..181527,AL513412.3:183702..183810, FT AL137020.13:134726..134911,AL137020.13:159107..159277, FT 7165238..7165357,7169798..7170040) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-002" FT /standard_name="OTTHUMP00000021053" FT /product="jumonji domain containing 2C" FT /note="match: proteins: Sw:Q9H3R0" FT /protein_id="CAI39606.1" FT /translation="MEVAEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAG FT LAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLAN FT SGKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVE FT EECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE FT RLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGF FT NHGFNCAESTNFATVRWIDYGKVAKLCTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDI FT YTIDHTKPTPASTPEVKAWLQRRRKVRKASRSFQCARSTSKRPKADEEEEVSDEVDGAE FT VPNPDSVTDDLKVSEKSEAAVKLRNTEASSEEESSASRMQVEQNLSDHIKLSGNSCLST FT SVTEDIKTEDDKAYAYRSVPSISSEADDSIPLSSGYEKPEKSDPSELSWPKSPESCSSV FT AESNGVLTEGEESDVESHGNGLEPGEIPAVPSGERNSFKVPSIAEGENKTSKSWRHPLS FT RPPARSPMTLVKQQAPSDEELPEVLSIEEEVEETESWAKPLIHLWQTKSPNFAAEQEYN FT ATVARMKPHCAICTLLMPYHKPDSSNEENDARWETKLDEVVTSEGKTKPLIPEMCFIYS FT EENIEYSPPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTA FT ECCLCNLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCIF FT CRHRVKRVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKVNPNVK FT SKACEKVISVGQTVITKHRNTRYYSCRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRD FT CLKLGPPAEGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKREDIYTLDEE FT LPKRVKARFVSAGRCHLGTCQVNSLSSPHVSQAQQETYLGFWINSKKSQCNIFLSGTY" FT CDS join(AL354707.17:125299..125442,AL354707.17:137909..138084, FT AL354707.17:146941..147055,AL445592.15:12847..13040, FT AL445592.15:43352..43401,AL445592.15:51300..51403, FT AL445592.15:56435..56572,AL513412.3:115535..115728, FT AL513412.3:118776..119014,AL513412.3:120954..121276, FT AL513412.3:125026..125134,AL513412.3:146308..146489, FT AL513412.3:148398..148611,AL513412.3:150463..150539, FT AL513412.3:181472..181527,AL513412.3:183702..183810, FT AL137020.13:134726..134911,AL137020.13:159107..159277, FT 7165238..7165357,7169798..7169890,7174553..7174729) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-001" FT /standard_name="OTTHUMP00000021052" FT /product="jumonji domain containing 2C" FT /note="match: proteins: Sw:Q8VCD7 Sw:Q9H3R0" FT /protein_id="CAI39607.1" FT /translation="MEVAEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAG FT LAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLAN FT SGKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVE FT EECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE FT RLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGF FT NHGFNCAESTNFATVRWIDYGKVAKLCTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDI FT YTIDHTKPTPASTPEVKAWLQRRRKVRKASRSFQCARSTSKRPKADEEEEVSDEVDGAE FT VPNPDSVTDDLKVSEKSEAAVKLRNTEASSEEESSASRMQVEQNLSDHIKLSGNSCLST FT SVTEDIKTEDDKAYAYRSVPSISSEADDSIPLSSGYEKPEKSDPSELSWPKSPESCSSV FT AESNGVLTEGEESDVESHGNGLEPGEIPAVPSGERNSFKVPSIAEGENKTSKSWRHPLS FT RPPARSPMTLVKQQAPSDEELPEVLSIEEEVEETESWAKPLIHLWQTKSPNFAAEQEYN FT ATVARMKPHCAICTLLMPYHKPDSSNEENDARWETKLDEVVTSEGKTKPLIPEMCFIYS FT EENIEYSPPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTA FT ECCLCNLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCIF FT CRHRVKRVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKVNPNVK FT SKACEKVISVGQTVITKHRNTRYYSCRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRD FT CLKLGPPAEGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKREDIYTLDEE FT LPKRVKARFSTASDMRFEDTFYGADIIQGERKRQRVLSSRFKNEYVADPVYRTFLKSSF FT QKKCQKRQ" FT mRNA join(AL137020.13:135309..135395,AL137020.13:159107..159277, FT 7165238..7165357,7169798..7170212) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-009" FT /product="jumonji domain containing 2C" FT /note="match: ESTs: Em:BF790712.1" FT mRNA join(AL513412.3:<148398..148611,AL513412.3:150463..150539, FT AL513412.3:181472..181527,AL513412.3:183702..183810, FT AL137020.13:134726..134911,AL137020.13:136443..136541, FT AL137020.13:159107..159277,7165238..7165357, FT 7169798..>7169829) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-006" FT /product="jumonji domain containing 2C" FT /note="match: ESTs: Em:BG187108.1 Em:BG191277.1 FT Em:BG194401.1 Em:BG194779.1 Em:BG195384.1 Em:BG197904.1 FT Em:BG200531.1 Em:BG205720.1 Em:BG210432.1 Em:BG210928.1 FT Em:BG210953.1 Em:BG213547.1 Em:BG216826.1 Em:BG217826.1 FT Em:BG218874.1 Em:BG219351.1 Em:BG219355.1" FT CDS join(AL513412.3:<148398..148611,AL513412.3:150463..150539, FT AL513412.3:181472..181527,AL513412.3:183702..183810, FT AL137020.13:134726..134911,AL137020.13:136443..136541, FT AL137020.13:159107..159277,7165238..7165357, FT 7169798..>7169829) FT /codon_start=1 FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-006" FT /standard_name="OTTHUMP00000021054" FT /product="jumonji domain containing 2C" FT /protein_id="CAI39608.1" FT /translation="PDSSNEENDARWETKLDEVVTSEGKTKPLIPEMCFIYSEENIEYS FT PPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTAECCLCNL FT RGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCIFCRHRVKR FT VSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKVNPNVFTAQSKHS FT KNESCIATTTSAAAAGATILCELGHKSKACEKVISVGQTVITKHRNTRYYSCRVMAVTS FT QTFYEVMFDDGSFSRDTFPEDIVSRDCLKLGPPAEGEVVQVKWPDGKLYGAKYFGSNIA FT HMYQVEFEDGSQIA" FT mRNA join(AL137020.13:158948..159277,7165238..7165357, FT 7169798..7169884) FT /gene="JMJD2C" FT /locus_tag="RP11-169L18.1-008" FT /product="jumonji domain containing 2C" FT /note="match: ESTs: Em:BQ694638.1" FT misc_feature 7291533 FT /note="Clone_right_end: RP11-169L18" FT misc_feature 7312940 FT /note="Clone_left_end: RP11-79K3" FT misc_feature 7327063 FT /note="Clone_right_end: RP11-244O6" FT misc_feature 7343267..7343276 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 7354875..7354899 FT /note="Single clone region. Assembly confirmed by FT restriction digest data. Single read sequenced with dGTP FT big dye terminator chemistry" FT misc_feature 7374671..7374716 FT /note="Single clone region. Assembly confirmed by FT restriction digest data. Single read sequenced with dGTP FT big dye terminator chemistry" FT misc_feature 7401218..7577169 FT /note="annotated region of clone" FT misc_feature 7401218 FT /note="Clone_left_end: RP11-87M1" FT misc_feature 7401855..7401862 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT polyA_signal complement(7476979..7476984) FT CDS complement(7477045..7478320) FT /pseudo FT /locus_tag="RP11-87M1.1-001" FT /product="ribosomal protein L4 (RPL4) pseudogene" FT /note="match: proteins: Sw:P08429 Sw:P36578 Sw:P50878" FT misc_feature 7482982 FT /note="Clone_right_end: RP11-79K3" FT misc_feature 7577169 FT /note="Clone_right_end: RP11-87M1" FT misc_feature 7577170..7682013 FT /note="annotated region of clone" FT CDS 7597823..7598371 FT /pseudo FT /locus_tag="RP11-366I21.1-001" FT /product="cyclophilin pseudogene" FT /note="match: proteins: Sw:P49792 Sw:P62941 Sw:Q9UNP9" FT misc_feature 7681814 FT /note="Clone_left_end: RP11-77E14" FT misc_feature 7682014..7835237 FT /note="annotated region of clone" FT misc_feature 7683735 FT /note="Clone_right_end: RP11-366I21" FT mRNA complement(join(7798344..7798637,7833925..7834006, FT AL391983.6:53161..53242)) FT /gene="C9orf123" FT /locus_tag="RP11-77E14.1-002" FT /product="chromosome 9 open reading frame 123" FT /note="match: ESTs: Em:BG212122.1" FT misc_feature 7769534 FT /note="Clone_left_end: RP11-203F16" FT polyA_site complement(7796490) FT polyA_signal complement(7796519..7796524) FT mRNA complement(join(7796490..7798637,7799461..7800067)) FT /gene="C9orf123" FT /locus_tag="RP11-77E14.1-003" FT /product="chromosome 9 open reading frame 123" FT /note="match: ESTs: Em:AA282544.1 Em:AI873460.1 FT Em:BE733004.1 Em:BG704853.1 Em:BI550091.1 Em:BI822295.1 FT Em:BI822915.1 Em:BI834909.1 Em:BI838403.1 Em:BM745042.1 FT Em:BM791849.1 Em:BQ446045.1 Em:BQ652874.1" FT /note="match: cDNAs: Em:AL137489.1 Em:BC009510.1" FT CDS complement(join(7798573..7798637,7799461..7799734)) FT /gene="C9orf123" FT /locus_tag="RP11-77E14.1-003" FT /standard_name="OTTHUMP00000021055" FT /product="chromosome 9 open reading frame 123" FT /note="match: proteins: Sw:Q96GE9" FT /protein_id="CAI16700.1" FT /translation="MGSRLSQPFESYITAPPGTAAAPAKPAPPATPGAPTSPAEHRLLK FT TCWSCRVLSGLGLMGAGGYVYWVARKPMKMGYPPSPWTITQMVIGLSIATWGIVVMADP FT KGKAYRVV" FT mRNA complement(join(7798199..7798637,7800041..7800148)) FT /gene="C9orf123" FT /locus_tag="RP11-77E14.1-001" FT /product="chromosome 9 open reading frame 123" FT /note="match: ESTs: Em:BG200842.1" FT misc_feature 7800132..7800165 FT /note="Sequence from reads for overlapping clone FT RP11-203F16 (AL391983). Assembly confirmed by restriction FT digest" FT misc_feature 7800166..7800191 FT /note="Single clone region. Sequence from overlapping clone FT RP11-203F16 (AL391983). Assembly confirmed by restriction FT digest" FT misc_feature 7800176 FT /note="Weak data" FT misc_feature 7800192..7800318 FT /note="Sequence from overlapping clone RP11-203F16 FT (AL391983). Assembly confirmed by restriction digest" FT misc_feature 7835137 FT /note="Clone_right_end: RP11-77E14" FT misc_feature 7835238..7914520 FT /note="annotated region of clone" FT mRNA complement(join(AL354694.18:116431..116724, FT AL354694.18:152012..152093,7888299..7888380)) FT /gene="C9orf123" FT /locus_tag="RP11-77E14.1-002" FT /product="chromosome 9 open reading frame 123" FT /note="match: ESTs: Em:BG212122.1" FT misc_feature 7914322 FT /note="Clone_left_end: RP11-29B9" FT misc_feature 7914521..8066890 FT /note="annotated region of clone" FT mRNA complement(join(7930827..7930898,7932085..7932170, FT 7935100..7935137)) FT /locus_tag="RP11-29B9.1-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AI699615.1" FT mRNA complement(join(7960413..7960662,7960830..7961080)) FT /locus_tag="RP11-29B9.2-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AI032394.1 Em:AI914464.1 FT Em:AW573152.1" FT misc_feature 8000730 FT /note="Clone_left_end: RP11-352G21" FT misc_feature 8066790 FT /note="Clone_right_end: RP11-29B9" FT misc_feature 8087214..8087279 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 8136140..8136313 FT /note="Single clone region. Sequenced derived by BAC PCR FT only. Assembly confirmed by restriction digest data" FT misc_feature 8162893 FT /note="Clone_right_end: RP11-352G21" FT misc_feature 8195569 FT /note="Clone_left_end: RP11-439I6" FT misc_feature 8195769..8362921 FT /note="annotated region of clone" FT mRNA complement(join(8314246..8317942,8319831..8319966, FT 8331582..8331736,8338922..8339047,8340343..8340469, FT 8341090..8341268,8341693..8341978, FT AL590397.7:123242..123396,AL590397.7:123913..124032, FT AL590397.7:136538..136713,AL590397.7:151843..151966, FT AL137125.7:27991..28088,AL137125.7:41124..41236, FT AL137125.7:51810..51970,AL137125.7:56865..57074, FT AL137125.7:62394..62484,AL137125.7:75518..75777, FT AL137125.7:76626..76723,AL137125.7:77161..77748, FT AL137125.7:84261..84378,AL137125.7:88641..88667, FT AL137125.7:91046..91239,AL137125.7:92153..92384, FT AL356584.21:101..174,AL356584.21:3376..3520, FT AL356584.21:6416..6549,AL356584.21:16963..17544, FT AL356584.21:20392..20661,AL356584.21:22628..22639, FT AL356584.21:24040..24150,AL356584.21:25742..25759, FT AL356584.21:26460..26468,AL356584.21:27706..27894, FT AL356584.21:132432..132573,AL356584.21:135814..135959, FT AL583805.7:69306..69472,AL353638.15:37027..37065)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-003" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:AB033584.1 Em:AB033586.1 FT Em:AF197944 Em:AF197944.1 Em:AF197945 Em:AF197945.1 FT Em:AF326559.1 Em:AF326560.1 Em:BC025145.1 Em:D13903.1 FT Em:D13904.1 Em:D13905.1 Em:D28530 Em:E09890.1 Em:E09891.1 FT Em:E09892.1 Em:L11587 Em:L32780.1 Em:L38929.1 Em:U35234 FT Em:U40317 Em:X54133 Em:X54133.1 Em:X82288" FT /note="match: ESTs: Em:AA059639.1 Em:AA322179.1 FT Em:AA390061.1 Em:AA447501 Em:AA643376.1 Em:AI002205 FT Em:AI033924.1 Em:AI034023.1 Em:AI034121.1 Em:AI034271.1 FT Em:AI091163.1 Em:AI218006.1 Em:AI326962.1 Em:AI337171.1 FT Em:AI385471.1 Em:AI439096.1 Em:AI458843.1 Em:AI652827.1 FT Em:AI684550.1 Em:AI740787.1 Em:AI763189.1 Em:AI765053.1 FT Em:AI769582.1 Em:AI854013.1 Em:AL364225 Em:AL793205.1 FT Em:AU118845.1 Em:AU132385 Em:AU132385.1 Em:AV595622.1 FT Em:AV595623 Em:AV652567.1 Em:AV726343 Em:AV728442.1 FT Em:AV750483 Em:AW120669.1 Em:AW207650.1 Em:AW363515 FT Em:AW363516 Em:AW382154 Em:AW385934 Em:AW385935 FT Em:AW385935.1 Em:AW385938 Em:AW449483.1 Em:AW576955 FT Em:AW611068.1 Em:AW838810 Em:AW893441.1 Em:AW972595.1 FT Em:BE314000.1 Em:BE328549.1 Em:BE648382.1 Em:BE669485.1 FT Em:BE677792.1 Em:BE719766.1 Em:BE739730.1 Em:BE765558 FT Em:BE950605.1 Em:BE951136.1 Em:BE957046.1 Em:BE979460.1 FT Em:BF062299.1 Em:BF090014 Em:BF105224 Em:BF332804 FT Em:BF363340 Em:BF363340.1 Em:BF431900.1 Em:BF478086.1 FT Em:BF524779.1 Em:BF785326.1 Em:BF919200.1 Em:BG009606.1 FT Em:BG250358.1 Em:BG328665.1 Em:BG514013.1 Em:BG564192.1 FT Em:BG707394.1 Em:BG802891.1 Em:BG945071.1 Em:BI010096.1 FT Em:BI343710.1 Em:BI346281.1 Em:BI769749.1 Em:BI914859.1 FT Em:BJ064304.1 Em:BJ074351.1 Em:BM091181.1 Em:BM091486.1 FT Em:BM120902.1 Em:BM220587.1 Em:BQ445966.1 Em:BU055913.1 FT Em:BU736557.1 Em:CA416196.1 Em:R40244.1 Em:W14143.1" FT CDS complement(join(8317874..8317942,8319831..8319966, FT 8331582..8331736,8338922..8339047,8340343..8340469, FT 8341090..8341268,8341693..8341978, FT AL590397.7:123242..123396,AL590397.7:123913..124032, FT AL590397.7:136538..136713,AL590397.7:151843..151966, FT AL137125.7:27991..28088,AL137125.7:41124..41236, FT AL137125.7:51810..51970,AL137125.7:56865..57074, FT AL137125.7:62394..62484,AL137125.7:75518..75777, FT AL137125.7:76626..76723,AL137125.7:77161..77748, FT AL137125.7:84261..84378,AL137125.7:88641..88667, FT AL137125.7:91046..91239,AL137125.7:92153..92384, FT AL356584.21:101..174,AL356584.21:3376..3520, FT AL356584.21:6416..6549,AL356584.21:16963..17544, FT AL356584.21:20392..20661,AL356584.21:22628..22639, FT AL356584.21:24040..24150,AL356584.21:25742..25759, FT AL356584.21:26460..26468,AL356584.21:27706..27894, FT AL356584.21:132432..132573,AL356584.21:135814..135959, FT AL583805.7:69306..69369)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-003" FT /standard_name="OTTHUMP00000022727" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: proteins: Sw:P10586 Sw:P23468 Sw:Q13332 FT Sw:Q64487 Tr:Q8R169 Tr:Q8VBV0 Tr:Q9IAJ0 Tr:Q9IAJ1 Tr:Q9IBA2 FT Tr:Q9QW67" FT /protein_id="CAH73847.2" FT /translation="MVHVARLLLLLLTFFLRTDAETPPRFTRTPVDQTGVSGGVASFIC FT QATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV FT GEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF FT LPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPAN FT LYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDLTPEDD FT MPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKALPKPPGTPVVTESTATSIT FT LTWDSGNPEPVSYYIIQHKPKNSEELYKEIDGVATTRYSVAGLSPYSDYEFRVVAVNNI FT GRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMD FT PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGVPG FT QPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLK FT PNSLYYFRLAARSPQGLGASTAEISARTMQSKPSAPPQDISCTSPSSTSILVSWQPPPV FT EKQNGIITEYSIKYTAVDGEDDKPHEILGIPSDTTKYLLEQLEKWTEYRITVTAHTDVG FT PGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVR FT MENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGDGARS FT KPKLVSTTGAVPGKPRLVINHTQMNTALIQWHPPVDTFGPLQGYRLKFGRKDMEPLTTL FT EFSEKEDHFTATDIHKGASYVFRLSARNKVGFGEEMVKEISIPEEVPTGFPQNLHSEGT FT TSTSVQLSWQPPVLAERNGIITKYTLLYRDINIPLLPMEQLIVPADTTMTLTGLKPDTT FT YDVKVRAHTSKGPGPYSPSVQFRTLPVDQVFAKNFHVKAVMKTSVLLSWEIPENYNSAM FT PFKILYDDGKMVEEVDGRATQKLIVNLKPEKSYSFVLTNRGNSAGGLQHRVTAKTAPDV FT LRTKPAFIGKTNLDGMITVQLPEVPANENIKGYYIIIVPLKKSRGKFIKPWESPDEMEL FT DELLKEISRKRRSIRYGREVELKPYIAAHFDVLPTEFTLGDDKHYGGFTNKQLQSGQEY FT VFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIV FT IAILLYKRKRAESDSRKSSIPNNKEIPSHHPTDPVELRRLNFQTPGMASHPPIPILELA FT DHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAI FT EGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERS FT RVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNGSSEKREVRQFQFTAWP FT DHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTV FT DIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTEVPARNLYAYIQKLTQIETG FT ENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGS FT DYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQ FT YWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPK FT SGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQ FT TVKMLRTQRPAMVQTEDQYQFSYRAALEYLGSFDHYAT" FT polyA_site complement(8314246) FT polyA_signal complement(8314263..8314268) FT misc_feature 8362821 FT /note="Clone_right_end: RP11-439I6" FT misc_feature 8362922..8421017 FT /note="annotated region of clone" FT mRNA complement(join(AL445926.5:118578..122274, FT AL445926.5:124163..124298,AL445926.5:135914..136068, FT AL445926.5:143254..143379,AL445926.5:144675..144801, FT AL445926.5:145422..145600,AL445926.5:146025..146310, FT 8375936..8376090,8376607..8376726,8389232..8389407, FT 8404537..8404660,AL137125.7:27991..28088, FT AL137125.7:41124..41236,AL137125.7:51810..51970, FT AL137125.7:56865..57074,AL137125.7:62394..62484, FT AL137125.7:75518..75777,AL137125.7:76626..76723, FT AL137125.7:77161..77748,AL137125.7:84261..84378, FT AL137125.7:88641..88667,AL137125.7:91046..91239, FT AL137125.7:92153..92384,AL356584.21:101..174, FT AL356584.21:3376..3520,AL356584.21:6416..6549, FT AL356584.21:16963..17544,AL356584.21:20392..20661, FT AL356584.21:22628..22639,AL356584.21:24040..24150, FT AL356584.21:25742..25759,AL356584.21:26460..26468, FT AL356584.21:27706..27894,AL356584.21:132432..132573, FT AL356584.21:135814..135959,AL583805.7:69306..69472, FT AL353638.15:37027..37065)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-003" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:AB033584.1 Em:AB033586.1 FT Em:AF197944 Em:AF197944.1 Em:AF197945 Em:AF197945.1 FT Em:AF326559.1 Em:AF326560.1 Em:BC025145.1 Em:D13903.1 FT Em:D13904.1 Em:D13905.1 Em:D28530 Em:E09890.1 Em:E09891.1 FT Em:E09892.1 Em:L11587 Em:L32780.1 Em:L38929.1 Em:U35234 FT Em:U40317 Em:X54133 Em:X54133.1 Em:X82288" FT /note="match: ESTs: Em:AA059639.1 Em:AA322179.1 FT Em:AA390061.1 Em:AA447501 Em:AA643376.1 Em:AI002205 FT Em:AI033924.1 Em:AI034023.1 Em:AI034121.1 Em:AI034271.1 FT Em:AI091163.1 Em:AI218006.1 Em:AI326962.1 Em:AI337171.1 FT Em:AI385471.1 Em:AI439096.1 Em:AI458843.1 Em:AI652827.1 FT Em:AI684550.1 Em:AI740787.1 Em:AI763189.1 Em:AI765053.1 FT Em:AI769582.1 Em:AI854013.1 Em:AL364225 Em:AL793205.1 FT Em:AU118845.1 Em:AU132385 Em:AU132385.1 Em:AV595622.1 FT Em:AV595623 Em:AV652567.1 Em:AV726343 Em:AV728442.1 FT Em:AV750483 Em:AW120669.1 Em:AW207650.1 Em:AW363515 FT Em:AW363516 Em:AW382154 Em:AW385934 Em:AW385935 FT Em:AW385935.1 Em:AW385938 Em:AW449483.1 Em:AW576955 FT Em:AW611068.1 Em:AW838810 Em:AW893441.1 Em:AW972595.1 FT Em:BE314000.1 Em:BE328549.1 Em:BE648382.1 Em:BE669485.1 FT Em:BE677792.1 Em:BE719766.1 Em:BE739730.1 Em:BE765558 FT Em:BE950605.1 Em:BE951136.1 Em:BE957046.1 Em:BE979460.1 FT Em:BF062299.1 Em:BF090014 Em:BF105224 Em:BF332804 FT Em:BF363340 Em:BF363340.1 Em:BF431900.1 Em:BF478086.1 FT Em:BF524779.1 Em:BF785326.1 Em:BF919200.1 Em:BG009606.1 FT Em:BG250358.1 Em:BG328665.1 Em:BG514013.1 Em:BG564192.1 FT Em:BG707394.1 Em:BG802891.1 Em:BG945071.1 Em:BI010096.1 FT Em:BI343710.1 Em:BI346281.1 Em:BI769749.1 Em:BI914859.1 FT Em:BJ064304.1 Em:BJ074351.1 Em:BM091181.1 Em:BM091486.1 FT Em:BM120902.1 Em:BM220587.1 Em:BQ445966.1 Em:BU055913.1 FT Em:BU736557.1 Em:CA416196.1 Em:R40244.1 Em:W14143.1" FT CDS complement(join(AL445926.5:122206..122274, FT AL445926.5:124163..124298,AL445926.5:135914..136068, FT AL445926.5:143254..143379,AL445926.5:144675..144801, FT AL445926.5:145422..145600,AL445926.5:146025..146310, FT 8375936..8376090,8376607..8376726,8389232..8389407, FT 8404537..8404660,AL137125.7:27991..28088, FT AL137125.7:41124..41236,AL137125.7:51810..51970, FT AL137125.7:56865..57074,AL137125.7:62394..62484, FT AL137125.7:75518..75777,AL137125.7:76626..76723, FT AL137125.7:77161..77748,AL137125.7:84261..84378, FT AL137125.7:88641..88667,AL137125.7:91046..91239, FT AL137125.7:92153..92384,AL356584.21:101..174, FT AL356584.21:3376..3520,AL356584.21:6416..6549, FT AL356584.21:16963..17544,AL356584.21:20392..20661, FT AL356584.21:22628..22639,AL356584.21:24040..24150, FT AL356584.21:25742..25759,AL356584.21:26460..26468, FT AL356584.21:27706..27894,AL356584.21:132432..132573, FT AL356584.21:135814..135959,AL583805.7:69306..69369)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-003" FT /standard_name="OTTHUMP00000022727" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: proteins: Sw:P10586 Sw:P23468 Sw:Q13332 FT Sw:Q64487 Tr:Q8R169 Tr:Q8VBV0 Tr:Q9IAJ0 Tr:Q9IAJ1 Tr:Q9IBA2 FT Tr:Q9QW67" FT /protein_id="CAH73128.2" FT /translation="MVHVARLLLLLLTFFLRTDAETPPRFTRTPVDQTGVSGGVASFIC FT QATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV FT GEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF FT LPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPAN FT LYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDLTPEDD FT MPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKALPKPPGTPVVTESTATSIT FT LTWDSGNPEPVSYYIIQHKPKNSEELYKEIDGVATTRYSVAGLSPYSDYEFRVVAVNNI FT GRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMD FT PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGVPG FT QPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLK FT PNSLYYFRLAARSPQGLGASTAEISARTMQSKPSAPPQDISCTSPSSTSILVSWQPPPV FT EKQNGIITEYSIKYTAVDGEDDKPHEILGIPSDTTKYLLEQLEKWTEYRITVTAHTDVG FT PGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVR FT MENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGDGARS FT KPKLVSTTGAVPGKPRLVINHTQMNTALIQWHPPVDTFGPLQGYRLKFGRKDMEPLTTL FT EFSEKEDHFTATDIHKGASYVFRLSARNKVGFGEEMVKEISIPEEVPTGFPQNLHSEGT FT TSTSVQLSWQPPVLAERNGIITKYTLLYRDINIPLLPMEQLIVPADTTMTLTGLKPDTT FT YDVKVRAHTSKGPGPYSPSVQFRTLPVDQVFAKNFHVKAVMKTSVLLSWEIPENYNSAM FT PFKILYDDGKMVEEVDGRATQKLIVNLKPEKSYSFVLTNRGNSAGGLQHRVTAKTAPDV FT LRTKPAFIGKTNLDGMITVQLPEVPANENIKGYYIIIVPLKKSRGKFIKPWESPDEMEL FT DELLKEISRKRRSIRYGREVELKPYIAAHFDVLPTEFTLGDDKHYGGFTNKQLQSGQEY FT VFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIV FT IAILLYKRKRAESDSRKSSIPNNKEIPSHHPTDPVELRRLNFQTPGMASHPPIPILELA FT DHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAI FT EGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERS FT RVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNGSSEKREVRQFQFTAWP FT DHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTV FT DIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTEVPARNLYAYIQKLTQIETG FT ENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGS FT DYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQ FT YWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPK FT SGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQ FT TVKMLRTQRPAMVQTEDQYQFSYRAALEYLGSFDHYAT" FT misc_feature 8421018..8500985 FT /note="annotated region of clone" FT mRNA complement(join(8485763..8486349,8492862..8492979, FT 8499647..8499840,8500754..8500985,AL356584.21:101..174)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-005" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:D13905.1 Em:E09892.1" FT mRNA complement(join(AL445926.5:118578..122274, FT AL445926.5:124163..124298,AL445926.5:135914..136068, FT AL445926.5:143254..143379,AL445926.5:144675..144801, FT AL445926.5:145422..145600,AL445926.5:146025..146310, FT AL590397.7:123242..123396,AL590397.7:123913..124032, FT AL590397.7:136538..136713,AL590397.7:151843..151966, FT 8436592..8436689,8449725..8449837,8460411..8460571, FT 8465466..8465675,8470995..8471085,8484119..8484378, FT 8485227..8485324,8485762..8486349,8492862..8492979, FT 8497242..8497268,8499647..8499840,8500754..8500985, FT AL356584.21:101..174,AL356584.21:3376..3520, FT AL356584.21:6416..6549,AL356584.21:16963..17544, FT AL356584.21:20392..20661,AL356584.21:22628..22639, FT AL356584.21:24040..24150,AL356584.21:25742..25759, FT AL356584.21:26460..26468,AL356584.21:27706..27894, FT AL356584.21:132432..132573,AL356584.21:135814..135959, FT AL583805.7:69306..69472,AL353638.15:37027..37065)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-003" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:AB033584.1 Em:AB033586.1 FT Em:AF197944 Em:AF197944.1 Em:AF197945 Em:AF197945.1 FT Em:AF326559.1 Em:AF326560.1 Em:BC025145.1 Em:D13903.1 FT Em:D13904.1 Em:D13905.1 Em:D28530 Em:E09890.1 Em:E09891.1 FT Em:E09892.1 Em:L11587 Em:L32780.1 Em:L38929.1 Em:U35234 FT Em:U40317 Em:X54133 Em:X54133.1 Em:X82288" FT /note="match: ESTs: Em:AA059639.1 Em:AA322179.1 FT Em:AA390061.1 Em:AA447501 Em:AA643376.1 Em:AI002205 FT Em:AI033924.1 Em:AI034023.1 Em:AI034121.1 Em:AI034271.1 FT Em:AI091163.1 Em:AI218006.1 Em:AI326962.1 Em:AI337171.1 FT Em:AI385471.1 Em:AI439096.1 Em:AI458843.1 Em:AI652827.1 FT Em:AI684550.1 Em:AI740787.1 Em:AI763189.1 Em:AI765053.1 FT Em:AI769582.1 Em:AI854013.1 Em:AL364225 Em:AL793205.1 FT Em:AU118845.1 Em:AU132385 Em:AU132385.1 Em:AV595622.1 FT Em:AV595623 Em:AV652567.1 Em:AV726343 Em:AV728442.1 FT Em:AV750483 Em:AW120669.1 Em:AW207650.1 Em:AW363515 FT Em:AW363516 Em:AW382154 Em:AW385934 Em:AW385935 FT Em:AW385935.1 Em:AW385938 Em:AW449483.1 Em:AW576955 FT Em:AW611068.1 Em:AW838810 Em:AW893441.1 Em:AW972595.1 FT Em:BE314000.1 Em:BE328549.1 Em:BE648382.1 Em:BE669485.1 FT Em:BE677792.1 Em:BE719766.1 Em:BE739730.1 Em:BE765558 FT Em:BE950605.1 Em:BE951136.1 Em:BE957046.1 Em:BE979460.1 FT Em:BF062299.1 Em:BF090014 Em:BF105224 Em:BF332804 FT Em:BF363340 Em:BF363340.1 Em:BF431900.1 Em:BF478086.1 FT Em:BF524779.1 Em:BF785326.1 Em:BF919200.1 Em:BG009606.1 FT Em:BG250358.1 Em:BG328665.1 Em:BG514013.1 Em:BG564192.1 FT Em:BG707394.1 Em:BG802891.1 Em:BG945071.1 Em:BI010096.1 FT Em:BI343710.1 Em:BI346281.1 Em:BI769749.1 Em:BI914859.1 FT Em:BJ064304.1 Em:BJ074351.1 Em:BM091181.1 Em:BM091486.1 FT Em:BM120902.1 Em:BM220587.1 Em:BQ445966.1 Em:BU055913.1 FT Em:BU736557.1 Em:CA416196.1 Em:R40244.1 Em:W14143.1" FT mRNA complement(join(8436585..8436689,8437198..8437239, FT 8449725..8449820)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-006" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: ESTs: Em:BF363871.1" FT CDS complement(join(AL445926.5:122206..122274, FT AL445926.5:124163..124298,AL445926.5:135914..136068, FT AL445926.5:143254..143379,AL445926.5:144675..144801, FT AL445926.5:145422..145600,AL445926.5:146025..146310, FT AL590397.7:123242..123396,AL590397.7:123913..124032, FT AL590397.7:136538..136713,AL590397.7:151843..151966, FT 8436592..8436689,8449725..8449837,8460411..8460571, FT 8465466..8465675,8470995..8471085,8484119..8484378, FT 8485227..8485324,8485762..8486349,8492862..8492979, FT 8497242..8497268,8499647..8499840,8500754..8500985, FT AL356584.21:101..174,AL356584.21:3376..3520, FT AL356584.21:6416..6549,AL356584.21:16963..17544, FT AL356584.21:20392..20661,AL356584.21:22628..22639, FT AL356584.21:24040..24150,AL356584.21:25742..25759, FT AL356584.21:26460..26468,AL356584.21:27706..27894, FT AL356584.21:132432..132573,AL356584.21:135814..135959, FT AL583805.7:69306..69369)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-003" FT /standard_name="OTTHUMP00000022727" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: proteins: Sw:P10586 Sw:P23468 Sw:Q13332 FT Sw:Q64487 Tr:Q8R169 Tr:Q8VBV0 Tr:Q9IAJ0 Tr:Q9IAJ1 Tr:Q9IBA2 FT Tr:Q9QW67" FT /protein_id="CAH70912.2" FT /translation="MVHVARLLLLLLTFFLRTDAETPPRFTRTPVDQTGVSGGVASFIC FT QATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV FT GEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF FT LPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPAN FT LYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDLTPEDD FT MPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKALPKPPGTPVVTESTATSIT FT LTWDSGNPEPVSYYIIQHKPKNSEELYKEIDGVATTRYSVAGLSPYSDYEFRVVAVNNI FT GRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMD FT PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGVPG FT QPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLK FT PNSLYYFRLAARSPQGLGASTAEISARTMQSKPSAPPQDISCTSPSSTSILVSWQPPPV FT EKQNGIITEYSIKYTAVDGEDDKPHEILGIPSDTTKYLLEQLEKWTEYRITVTAHTDVG FT PGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVR FT MENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGDGARS FT KPKLVSTTGAVPGKPRLVINHTQMNTALIQWHPPVDTFGPLQGYRLKFGRKDMEPLTTL FT EFSEKEDHFTATDIHKGASYVFRLSARNKVGFGEEMVKEISIPEEVPTGFPQNLHSEGT FT TSTSVQLSWQPPVLAERNGIITKYTLLYRDINIPLLPMEQLIVPADTTMTLTGLKPDTT FT YDVKVRAHTSKGPGPYSPSVQFRTLPVDQVFAKNFHVKAVMKTSVLLSWEIPENYNSAM FT PFKILYDDGKMVEEVDGRATQKLIVNLKPEKSYSFVLTNRGNSAGGLQHRVTAKTAPDV FT LRTKPAFIGKTNLDGMITVQLPEVPANENIKGYYIIIVPLKKSRGKFIKPWESPDEMEL FT DELLKEISRKRRSIRYGREVELKPYIAAHFDVLPTEFTLGDDKHYGGFTNKQLQSGQEY FT VFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIV FT IAILLYKRKRAESDSRKSSIPNNKEIPSHHPTDPVELRRLNFQTPGMASHPPIPILELA FT DHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAI FT EGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERS FT RVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNGSSEKREVRQFQFTAWP FT DHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTV FT DIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTEVPARNLYAYIQKLTQIETG FT ENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGS FT DYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQ FT YWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPK FT SGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQ FT TVKMLRTQRPAMVQTEDQYQFSYRAALEYLGSFDHYAT" FT misc_feature 8488470 FT /note="Clone_left_end: RP11-60C15" FT misc_feature 8500986..8666474 FT /note="annotated region of clone" FT mRNA complement(join(AL137125.7:77162..77748, FT AL137125.7:84261..84378,AL137125.7:91046..91239, FT AL137125.7:92153..92384,8500986..8501059)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-005" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:D13905.1 Em:E09892.1" FT polyA_site complement(8528152) FT polyA_signal complement(8528174..8528179) FT mRNA complement(join(AL445926.5:118578..122274, FT AL445926.5:124163..124298,AL445926.5:135914..136068, FT AL445926.5:143254..143379,AL445926.5:144675..144801, FT AL445926.5:145422..145600,AL445926.5:146025..146310, FT AL590397.7:123242..123396,AL590397.7:123913..124032, FT AL590397.7:136538..136713,AL590397.7:151843..151966, FT AL137125.7:27991..28088,AL137125.7:41124..41236, FT AL137125.7:51810..51970,AL137125.7:56865..57074, FT AL137125.7:62394..62484,AL137125.7:75518..75777, FT AL137125.7:76626..76723,AL137125.7:77161..77748, FT AL137125.7:84261..84378,AL137125.7:88641..88667, FT AL137125.7:91046..91239,AL137125.7:92153..92384, FT 8500986..8501059,8504261..8504405,8507301..8507434, FT 8517848..8518429,8521277..8521546,8523513..8523524, FT 8524925..8525035,8526627..8526644,8527345..8527353, FT 8528591..8528779,8633317..8633458,8636699..8636844, FT AL583805.7:69306..69472,AL353638.15:37027..37065)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-003" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:AB033584.1 Em:AB033586.1 FT Em:AF197944 Em:AF197944.1 Em:AF197945 Em:AF197945.1 FT Em:AF326559.1 Em:AF326560.1 Em:BC025145.1 Em:D13903.1 FT Em:D13904.1 Em:D13905.1 Em:D28530 Em:E09890.1 Em:E09891.1 FT Em:E09892.1 Em:L11587 Em:L32780.1 Em:L38929.1 Em:U35234 FT Em:U40317 Em:X54133 Em:X54133.1 Em:X82288" FT /note="match: ESTs: Em:AA059639.1 Em:AA322179.1 FT Em:AA390061.1 Em:AA447501 Em:AA643376.1 Em:AI002205 FT Em:AI033924.1 Em:AI034023.1 Em:AI034121.1 Em:AI034271.1 FT Em:AI091163.1 Em:AI218006.1 Em:AI326962.1 Em:AI337171.1 FT Em:AI385471.1 Em:AI439096.1 Em:AI458843.1 Em:AI652827.1 FT Em:AI684550.1 Em:AI740787.1 Em:AI763189.1 Em:AI765053.1 FT Em:AI769582.1 Em:AI854013.1 Em:AL364225 Em:AL793205.1 FT Em:AU118845.1 Em:AU132385 Em:AU132385.1 Em:AV595622.1 FT Em:AV595623 Em:AV652567.1 Em:AV726343 Em:AV728442.1 FT Em:AV750483 Em:AW120669.1 Em:AW207650.1 Em:AW363515 FT Em:AW363516 Em:AW382154 Em:AW385934 Em:AW385935 FT Em:AW385935.1 Em:AW385938 Em:AW449483.1 Em:AW576955 FT Em:AW611068.1 Em:AW838810 Em:AW893441.1 Em:AW972595.1 FT Em:BE314000.1 Em:BE328549.1 Em:BE648382.1 Em:BE669485.1 FT Em:BE677792.1 Em:BE719766.1 Em:BE739730.1 Em:BE765558 FT Em:BE950605.1 Em:BE951136.1 Em:BE957046.1 Em:BE979460.1 FT Em:BF062299.1 Em:BF090014 Em:BF105224 Em:BF332804 FT Em:BF363340 Em:BF363340.1 Em:BF431900.1 Em:BF478086.1 FT Em:BF524779.1 Em:BF785326.1 Em:BF919200.1 Em:BG009606.1 FT Em:BG250358.1 Em:BG328665.1 Em:BG514013.1 Em:BG564192.1 FT Em:BG707394.1 Em:BG802891.1 Em:BG945071.1 Em:BI010096.1 FT Em:BI343710.1 Em:BI346281.1 Em:BI769749.1 Em:BI914859.1 FT Em:BJ064304.1 Em:BJ074351.1 Em:BM091181.1 Em:BM091486.1 FT Em:BM120902.1 Em:BM220587.1 Em:BQ445966.1 Em:BU055913.1 FT Em:BU736557.1 Em:CA416196.1 Em:R40244.1 Em:W14143.1" FT misc_feature 8566617..8566679 FT /note="Sequence from overlapping clone RP11-175E13 FT (AL137125). Assembly confirmed by restriction digest" FT misc_feature 8567517 FT /note="Clone_right_end: RP11-175E13" FT misc_feature 8568825..8568913 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT CDS complement(join(AL445926.5:122206..122274, FT AL445926.5:124163..124298,AL445926.5:135914..136068, FT AL445926.5:143254..143379,AL445926.5:144675..144801, FT AL445926.5:145422..145600,AL445926.5:146025..146310, FT AL590397.7:123242..123396,AL590397.7:123913..124032, FT AL590397.7:136538..136713,AL590397.7:151843..151966, FT AL137125.7:27991..28088,AL137125.7:41124..41236, FT AL137125.7:51810..51970,AL137125.7:56865..57074, FT AL137125.7:62394..62484,AL137125.7:75518..75777, FT AL137125.7:76626..76723,AL137125.7:77161..77748, FT AL137125.7:84261..84378,AL137125.7:88641..88667, FT AL137125.7:91046..91239,AL137125.7:92153..92384, FT 8500986..8501059,8504261..8504405,8507301..8507434, FT 8517848..8518429,8521277..8521546,8523513..8523524, FT 8524925..8525035,8526627..8526644,8527345..8527353, FT 8528591..8528779,8633317..8633458,8636699..8636844, FT AL583805.7:69306..69369)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-003" FT /standard_name="OTTHUMP00000022727" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: proteins: Sw:P10586 Sw:P23468 Sw:Q13332 FT Sw:Q64487 Tr:Q8R169 Tr:Q8VBV0 Tr:Q9IAJ0 Tr:Q9IAJ1 Tr:Q9IBA2 FT Tr:Q9QW67" FT /protein_id="CAI16146.2" FT /translation="MVHVARLLLLLLTFFLRTDAETPPRFTRTPVDQTGVSGGVASFIC FT QATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV FT GEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF FT LPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPAN FT LYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDLTPEDD FT MPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKALPKPPGTPVVTESTATSIT FT LTWDSGNPEPVSYYIIQHKPKNSEELYKEIDGVATTRYSVAGLSPYSDYEFRVVAVNNI FT GRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMD FT PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGVPG FT QPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLK FT PNSLYYFRLAARSPQGLGASTAEISARTMQSKPSAPPQDISCTSPSSTSILVSWQPPPV FT EKQNGIITEYSIKYTAVDGEDDKPHEILGIPSDTTKYLLEQLEKWTEYRITVTAHTDVG FT PGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVR FT MENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGDGARS FT KPKLVSTTGAVPGKPRLVINHTQMNTALIQWHPPVDTFGPLQGYRLKFGRKDMEPLTTL FT EFSEKEDHFTATDIHKGASYVFRLSARNKVGFGEEMVKEISIPEEVPTGFPQNLHSEGT FT TSTSVQLSWQPPVLAERNGIITKYTLLYRDINIPLLPMEQLIVPADTTMTLTGLKPDTT FT YDVKVRAHTSKGPGPYSPSVQFRTLPVDQVFAKNFHVKAVMKTSVLLSWEIPENYNSAM FT PFKILYDDGKMVEEVDGRATQKLIVNLKPEKSYSFVLTNRGNSAGGLQHRVTAKTAPDV FT LRTKPAFIGKTNLDGMITVQLPEVPANENIKGYYIIIVPLKKSRGKFIKPWESPDEMEL FT DELLKEISRKRRSIRYGREVELKPYIAAHFDVLPTEFTLGDDKHYGGFTNKQLQSGQEY FT VFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIV FT IAILLYKRKRAESDSRKSSIPNNKEIPSHHPTDPVELRRLNFQTPGMASHPPIPILELA FT DHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAI FT EGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERS FT RVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNGSSEKREVRQFQFTAWP FT DHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTV FT DIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTEVPARNLYAYIQKLTQIETG FT ENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGS FT DYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQ FT YWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPK FT SGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQ FT TVKMLRTQRPAMVQTEDQYQFSYRAALEYLGSFDHYAT" FT misc_feature 8596013 FT /note="Clone_left_end: RP11-134K1" FT mRNA complement(join(8524949..8525035,8528591..8528779, FT 8633317..8633460)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-004" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: ESTs: Em:N94871.1 Em:W07719.1" FT mRNA complement(join(8528152..8528492,8528591..8528779, FT 8633317..8633458,8636699..8636844,AL583805.7:69306..69472, FT AL353638.15:37027..37065,AL591133.7:42567..42626, FT AL354722.10:104290..104323,AL354722.10:121593..121664, FT AL157826.8:60286..60335,AL513422.2:66943..66981, FT AL513422.2:99220..99261,AL441884.5:66360..66463, FT AL390723.21:23888..23960,AL137069.15:69098..69152, FT AL135790.7:135511..135618,AL135790.7:135801..135836)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-001" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:BC028038.1" FT /note="match: ESTs: Em:AA461176.1 Em:AA775818.1 FT Em:BI918807.1" FT misc_feature 8643192..8643209 FT /note="Sequence from overlapping clone RP11-134K1 FT (AL583805). Sequence from uni-directional energy transfer FT primer reads only. Assembly confirmed by restriction FT digest" FT misc_feature 8666374 FT /note="Clone_right_end: RP11-60C15" FT misc_feature 8666475..8754202 FT /note="annotated region of clone" FT mRNA complement(join(8700595..8700916,8701390..8701552)) FT /locus_tag="RP11-134K1.3-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AA019797.1" FT mRNA complement(join(AL445926.5:118578..122274, FT AL445926.5:124163..124298,AL445926.5:135914..136068, FT AL445926.5:143254..143379,AL445926.5:144675..144801, FT AL445926.5:145422..145600,AL445926.5:146025..146310, FT AL590397.7:123242..123396,AL590397.7:123913..124032, FT AL590397.7:136538..136713,AL590397.7:151843..151966, FT AL137125.7:27991..28088,AL137125.7:41124..41236, FT AL137125.7:51810..51970,AL137125.7:56865..57074, FT AL137125.7:62394..62484,AL137125.7:75518..75777, FT AL137125.7:76626..76723,AL137125.7:77161..77748, FT AL137125.7:84261..84378,AL137125.7:88641..88667, FT AL137125.7:91046..91239,AL137125.7:92153..92384, FT AL356584.21:101..174,AL356584.21:3376..3520, FT AL356584.21:6416..6549,AL356584.21:16963..17544, FT AL356584.21:20392..20661,AL356584.21:22628..22639, FT AL356584.21:24040..24150,AL356584.21:25742..25759, FT AL356584.21:26460..26468,AL356584.21:27706..27894, FT AL356584.21:132432..132573,AL356584.21:135814..135959, FT 8733780..8733946,AL353638.15:37027..37065)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-003" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:AB033584.1 Em:AB033586.1 FT Em:AF197944 Em:AF197944.1 Em:AF197945 Em:AF197945.1 FT Em:AF326559.1 Em:AF326560.1 Em:BC025145.1 Em:D13903.1 FT Em:D13904.1 Em:D13905.1 Em:D28530 Em:E09890.1 Em:E09891.1 FT Em:E09892.1 Em:L11587 Em:L32780.1 Em:L38929.1 Em:U35234 FT Em:U40317 Em:X54133 Em:X54133.1 Em:X82288" FT /note="match: ESTs: Em:AA059639.1 Em:AA322179.1 FT Em:AA390061.1 Em:AA447501 Em:AA643376.1 Em:AI002205 FT Em:AI033924.1 Em:AI034023.1 Em:AI034121.1 Em:AI034271.1 FT Em:AI091163.1 Em:AI218006.1 Em:AI326962.1 Em:AI337171.1 FT Em:AI385471.1 Em:AI439096.1 Em:AI458843.1 Em:AI652827.1 FT Em:AI684550.1 Em:AI740787.1 Em:AI763189.1 Em:AI765053.1 FT Em:AI769582.1 Em:AI854013.1 Em:AL364225 Em:AL793205.1 FT Em:AU118845.1 Em:AU132385 Em:AU132385.1 Em:AV595622.1 FT Em:AV595623 Em:AV652567.1 Em:AV726343 Em:AV728442.1 FT Em:AV750483 Em:AW120669.1 Em:AW207650.1 Em:AW363515 FT Em:AW363516 Em:AW382154 Em:AW385934 Em:AW385935 FT Em:AW385935.1 Em:AW385938 Em:AW449483.1 Em:AW576955 FT Em:AW611068.1 Em:AW838810 Em:AW893441.1 Em:AW972595.1 FT Em:BE314000.1 Em:BE328549.1 Em:BE648382.1 Em:BE669485.1 FT Em:BE677792.1 Em:BE719766.1 Em:BE739730.1 Em:BE765558 FT Em:BE950605.1 Em:BE951136.1 Em:BE957046.1 Em:BE979460.1 FT Em:BF062299.1 Em:BF090014 Em:BF105224 Em:BF332804 FT Em:BF363340 Em:BF363340.1 Em:BF431900.1 Em:BF478086.1 FT Em:BF524779.1 Em:BF785326.1 Em:BF919200.1 Em:BG009606.1 FT Em:BG250358.1 Em:BG328665.1 Em:BG514013.1 Em:BG564192.1 FT Em:BG707394.1 Em:BG802891.1 Em:BG945071.1 Em:BI010096.1 FT Em:BI343710.1 Em:BI346281.1 Em:BI769749.1 Em:BI914859.1 FT Em:BJ064304.1 Em:BJ074351.1 Em:BM091181.1 Em:BM091486.1 FT Em:BM120902.1 Em:BM220587.1 Em:BQ445966.1 Em:BU055913.1 FT Em:BU736557.1 Em:CA416196.1 Em:R40244.1 Em:W14143.1" FT CDS 8713311..8713841 FT /pseudo FT /locus_tag="RP11-134K1.2-001" FT /product="ribosomal protein 18 (RPL18) pseudogene" FT /note="match: proteins: Sw:O44480 Sw:O57561 Sw:P41093 FT Sw:P62717 Sw:P62718 Sw:Q02543 Sw:Q8WQI7 Sw:Q90YU9 Tr:O76968 FT Tr:P41093" FT polyA_signal 8713871..8713876 FT CDS complement(join(AL445926.5:122206..122274, FT AL445926.5:124163..124298,AL445926.5:135914..136068, FT AL445926.5:143254..143379,AL445926.5:144675..144801, FT AL445926.5:145422..145600,AL445926.5:146025..146310, FT AL590397.7:123242..123396,AL590397.7:123913..124032, FT AL590397.7:136538..136713,AL590397.7:151843..151966, FT AL137125.7:27991..28088,AL137125.7:41124..41236, FT AL137125.7:51810..51970,AL137125.7:56865..57074, FT AL137125.7:62394..62484,AL137125.7:75518..75777, FT AL137125.7:76626..76723,AL137125.7:77161..77748, FT AL137125.7:84261..84378,AL137125.7:88641..88667, FT AL137125.7:91046..91239,AL137125.7:92153..92384, FT AL356584.21:101..174,AL356584.21:3376..3520, FT AL356584.21:6416..6549,AL356584.21:16963..17544, FT AL356584.21:20392..20661,AL356584.21:22628..22639, FT AL356584.21:24040..24150,AL356584.21:25742..25759, FT AL356584.21:26460..26468,AL356584.21:27706..27894, FT AL356584.21:132432..132573,AL356584.21:135814..135959, FT 8733780..8733843)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-003" FT /standard_name="OTTHUMP00000022727" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: proteins: Sw:P10586 Sw:P23468 Sw:Q13332 FT Sw:Q64487 Tr:Q8R169 Tr:Q8VBV0 Tr:Q9IAJ0 Tr:Q9IAJ1 Tr:Q9IBA2 FT Tr:Q9QW67" FT /protein_id="CAH70443.2" FT /translation="MVHVARLLLLLLTFFLRTDAETPPRFTRTPVDQTGVSGGVASFIC FT QATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV FT GEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF FT LPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPAN FT LYVRELREVRRVPPRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDLTPEDD FT MPIGRNVLELNDVRQSANYTCVAMSTLGVIEAIAQITVKALPKPPGTPVVTESTATSIT FT LTWDSGNPEPVSYYIIQHKPKNSEELYKEIDGVATTRYSVAGLSPYSDYEFRVVAVNNI FT GRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMD FT PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGVPG FT QPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLK FT PNSLYYFRLAARSPQGLGASTAEISARTMQSKPSAPPQDISCTSPSSTSILVSWQPPPV FT EKQNGIITEYSIKYTAVDGEDDKPHEILGIPSDTTKYLLEQLEKWTEYRITVTAHTDVG FT PGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVR FT MENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGDGARS FT KPKLVSTTGAVPGKPRLVINHTQMNTALIQWHPPVDTFGPLQGYRLKFGRKDMEPLTTL FT EFSEKEDHFTATDIHKGASYVFRLSARNKVGFGEEMVKEISIPEEVPTGFPQNLHSEGT FT TSTSVQLSWQPPVLAERNGIITKYTLLYRDINIPLLPMEQLIVPADTTMTLTGLKPDTT FT YDVKVRAHTSKGPGPYSPSVQFRTLPVDQVFAKNFHVKAVMKTSVLLSWEIPENYNSAM FT PFKILYDDGKMVEEVDGRATQKLIVNLKPEKSYSFVLTNRGNSAGGLQHRVTAKTAPDV FT LRTKPAFIGKTNLDGMITVQLPEVPANENIKGYYIIIVPLKKSRGKFIKPWESPDEMEL FT DELLKEISRKRRSIRYGREVELKPYIAAHFDVLPTEFTLGDDKHYGGFTNKQLQSGQEY FT VFFVLAVMEHAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIICIV FT IAILLYKRKRAESDSRKSSIPNNKEIPSHHPTDPVELRRLNFQTPGMASHPPIPILELA FT DHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAI FT EGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERS FT RVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNGSSEKREVRQFQFTAWP FT DHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTV FT DIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTEVPARNLYAYIQKLTQIETG FT ENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGS FT DYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQ FT YWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPK FT SGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQ FT TVKMLRTQRPAMVQTEDQYQFSYRAALEYLGSFDHYAT" FT misc_feature 8752202 FT /note="Clone_right_end: RP11-134K1" FT mRNA complement(join(AL356584.21:27267..27607, FT AL356584.21:27706..27894,AL356584.21:132432..132573, FT AL356584.21:135814..135959,8733780..8733946, FT AL353638.15:37027..37065,AL591133.7:42567..42626, FT AL354722.10:104290..104323,AL354722.10:121593..121664, FT AL157826.8:60286..60335,AL513422.2:66943..66981, FT AL513422.2:99220..99261,AL441884.5:66360..66463, FT AL390723.21:23888..23960,AL137069.15:69098..69152, FT AL135790.7:135511..135618,AL135790.7:135801..135836)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-001" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:BC028038.1" FT /note="match: ESTs: Em:AA461176.1 Em:AA775818.1 FT Em:BI918807.1" FT misc_feature 8754203..8852430 FT /note="annotated region of clone" FT misc_feature 8832171 FT /note="Clone_left_end: RP11-13N19" FT misc_feature 8850430 FT /note="Clone_right_end: RP11-10G21" FT misc_feature 8852431..8855157 FT /note="annotated region of clone" FT misc_feature 8855158..8983670 FT /note="annotated region of clone" FT mRNA join(8858130..8858323,8860782..8862255) FT /locus_tag="RP11-75C9.1-002" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AV723260.1 Em:BF105042.1 FT Em:BF381765.1 Em:BF381894.1 Em:BI914857.1" FT mRNA join(8858134..8858323,8859956..8861724) FT /locus_tag="RP11-75C9.1-001" FT /product="putative novel transcript" FT /note="match: cDNAs: Em:AK094342.1" FT mRNA join(8936079..8936179,8958722..8958848,8962124..8962189, FT 8962800..8963077) FT /locus_tag="RP11-75C9.2-001" FT /product="novel transcript" FT /note="match: ESTs: Em:BG197735.1" FT misc_feature 8979671 FT /note="Clone_left_end: RP11-338L20" FT misc_feature 8983671..9142737 FT /note="annotated region of clone" FT misc_feature 9005682 FT /note="Clone_left_end: RP11-12I16" FT mRNA complement(join(AL445926.5:118578..122274, FT AL445926.5:124163..124298,AL445926.5:135914..136068, FT AL445926.5:143254..143379,AL445926.5:144675..144801, FT AL445926.5:145422..145600,AL445926.5:146025..146310, FT AL590397.7:123242..123396,AL590397.7:123913..124032, FT AL590397.7:136538..136713,AL590397.7:151843..151966, FT AL137125.7:27991..28088,AL137125.7:41124..41236, FT AL137125.7:51810..51970,AL137125.7:56865..57074, FT AL137125.7:62394..62484,AL137125.7:75518..75777, FT AL137125.7:76626..76723,AL137125.7:77161..77748, FT AL137125.7:84261..84378,AL137125.7:88641..88667, FT AL137125.7:91046..91239,AL137125.7:92153..92384, FT AL356584.21:101..174,AL356584.21:3376..3520, FT AL356584.21:6416..6549,AL356584.21:16963..17544, FT AL356584.21:20392..20661,AL356584.21:22628..22639, FT AL356584.21:24040..24150,AL356584.21:25742..25759, FT AL356584.21:26460..26468,AL356584.21:27706..27894, FT AL356584.21:132432..132573,AL356584.21:135814..135959, FT AL583805.7:69306..69472,9018697..9018735)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-003" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:AB033584.1 Em:AB033586.1 FT Em:AF197944 Em:AF197944.1 Em:AF197945 Em:AF197945.1 FT Em:AF326559.1 Em:AF326560.1 Em:BC025145.1 Em:D13903.1 FT Em:D13904.1 Em:D13905.1 Em:D28530 Em:E09890.1 Em:E09891.1 FT Em:E09892.1 Em:L11587 Em:L32780.1 Em:L38929.1 Em:U35234 FT Em:U40317 Em:X54133 Em:X54133.1 Em:X82288" FT /note="match: ESTs: Em:AA059639.1 Em:AA322179.1 FT Em:AA390061.1 Em:AA447501 Em:AA643376.1 Em:AI002205 FT Em:AI033924.1 Em:AI034023.1 Em:AI034121.1 Em:AI034271.1 FT Em:AI091163.1 Em:AI218006.1 Em:AI326962.1 Em:AI337171.1 FT Em:AI385471.1 Em:AI439096.1 Em:AI458843.1 Em:AI652827.1 FT Em:AI684550.1 Em:AI740787.1 Em:AI763189.1 Em:AI765053.1 FT Em:AI769582.1 Em:AI854013.1 Em:AL364225 Em:AL793205.1 FT Em:AU118845.1 Em:AU132385 Em:AU132385.1 Em:AV595622.1 FT Em:AV595623 Em:AV652567.1 Em:AV726343 Em:AV728442.1 FT Em:AV750483 Em:AW120669.1 Em:AW207650.1 Em:AW363515 FT Em:AW363516 Em:AW382154 Em:AW385934 Em:AW385935 FT Em:AW385935.1 Em:AW385938 Em:AW449483.1 Em:AW576955 FT Em:AW611068.1 Em:AW838810 Em:AW893441.1 Em:AW972595.1 FT Em:BE314000.1 Em:BE328549.1 Em:BE648382.1 Em:BE669485.1 FT Em:BE677792.1 Em:BE719766.1 Em:BE739730.1 Em:BE765558 FT Em:BE950605.1 Em:BE951136.1 Em:BE957046.1 Em:BE979460.1 FT Em:BF062299.1 Em:BF090014 Em:BF105224 Em:BF332804 FT Em:BF363340 Em:BF363340.1 Em:BF431900.1 Em:BF478086.1 FT Em:BF524779.1 Em:BF785326.1 Em:BF919200.1 Em:BG009606.1 FT Em:BG250358.1 Em:BG328665.1 Em:BG514013.1 Em:BG564192.1 FT Em:BG707394.1 Em:BG802891.1 Em:BG945071.1 Em:BI010096.1 FT Em:BI343710.1 Em:BI346281.1 Em:BI769749.1 Em:BI914859.1 FT Em:BJ064304.1 Em:BJ074351.1 Em:BM091181.1 Em:BM091486.1 FT Em:BM120902.1 Em:BM220587.1 Em:BQ445966.1 Em:BU055913.1 FT Em:BU736557.1 Em:CA416196.1 Em:R40244.1 Em:W14143.1" FT CDS 9090874..9091323 FT /pseudo FT /locus_tag="RP11-338L20.1-001" FT /product="ribosomal protein S26 pseudogene 3" FT /note="match: proteins: Sw:P30742 Sw:P49171 Sw:P62856 FT Tr:Q90YP7 Tr:Q90YP8" FT mRNA complement(join(AL356584.21:27267..27607, FT AL356584.21:27706..27894,AL356584.21:132432..132573, FT AL356584.21:135814..135959,AL583805.7:69306..69472, FT 9018697..9018735,AL591133.7:42567..42626, FT AL354722.10:104290..104323,AL354722.10:121593..121664, FT AL157826.8:60286..60335,AL513422.2:66943..66981, FT AL513422.2:99220..99261,AL441884.5:66360..66463, FT AL390723.21:23888..23960,AL137069.15:69098..69152, FT AL135790.7:135511..135618,AL135790.7:135801..135836)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-001" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:BC028038.1" FT /note="match: ESTs: Em:AA461176.1 Em:AA775818.1 FT Em:BI918807.1" FT misc_feature 9140737 FT /note="Clone_right_end: RP11-338L20" FT misc_feature 9142738..9207214 FT /note="annotated region of clone" FT misc_feature 9203215 FT /note="Clone_left_end: RP11-141L16" FT mRNA complement(join(AL356584.21:27267..27607, FT AL356584.21:27706..27894,AL356584.21:132432..132573, FT AL356584.21:135814..135959,AL583805.7:69306..69472, FT AL353638.15:37027..37065,9183304..9183363, FT AL354722.10:104290..104323,AL354722.10:121593..121664, FT AL157826.8:60286..60335,AL513422.2:66943..66981, FT AL513422.2:99220..99261,AL441884.5:66360..66463, FT AL390723.21:23888..23960,AL137069.15:69098..69152, FT AL135790.7:135511..135618,AL135790.7:135801..135836)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-001" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:BC028038.1" FT /note="match: ESTs: Em:AA461176.1 Em:AA775818.1 FT Em:BI918807.1" FT misc_feature 9207215..9295158 FT /note="annotated region of clone" FT misc_feature 9210182 FT /note="Clone_right_end: RP11-12I16" FT misc_feature 9291159 FT /note="Clone_left_end: RP11-744O14" FT misc_feature 9295159..9419204 FT /note="annotated region of clone" FT misc_feature 9417106 FT /note="Clone_left_end: RP11-143N16" FT mRNA complement(join(AL356584.21:27267..27607, FT AL356584.21:27706..27894,AL356584.21:132432..132573, FT AL356584.21:135814..135959,AL583805.7:69306..69472, FT AL353638.15:37027..37065,AL591133.7:42567..42626, FT 9397449..9397482,9414752..9414823,AL157826.8:60286..60335, FT AL513422.2:66943..66981,AL513422.2:99220..99261, FT AL441884.5:66360..66463,AL390723.21:23888..23960, FT AL137069.15:69098..69152,AL135790.7:135511..135618, FT AL135790.7:135801..135836)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-001" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:BC028038.1" FT /note="match: ESTs: Em:AA461176.1 Em:AA775818.1 FT Em:BI918807.1" FT misc_feature 9419205..9514546 FT /note="annotated region of clone" FT misc_feature 9464917 FT /note="Clone_right_end: RP11-744O14" FT misc_feature 9514347 FT /note="Clone_left_end: RP11-176P17" FT misc_feature 9514547..9663533 FT /note="annotated region of clone" FT misc_feature 9601101 FT /note="Clone_right_end: RP11-143N16" FT mRNA complement(join(9574732..9574747,AL513422.2:66943..66981, FT AL513422.2:99220..99261,AL441884.5:66360..66463, FT AL390723.21:23888..23960,AL137069.15:69098..69152, FT AL135790.7:135511..135814)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-002" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: ESTs: Em:BI917145.1" FT mRNA complement(join(AL356584.21:27267..27607, FT AL356584.21:27706..27894,AL356584.21:132432..132573, FT AL356584.21:135814..135959,AL583805.7:69306..69472, FT AL353638.15:37027..37065,AL591133.7:42567..42626, FT AL354722.10:104290..104323,AL354722.10:121593..121664, FT 9574732..9574781,AL513422.2:66943..66981, FT AL513422.2:99220..99261,AL441884.5:66360..66463, FT AL390723.21:23888..23960,AL137069.15:69098..69152, FT AL135790.7:135511..135618,AL135790.7:135801..135836)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-001" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:BC028038.1" FT /note="match: ESTs: Em:AA461176.1 Em:AA775818.1 FT Em:BI918807.1" FT misc_feature 9663433 FT /note="Clone_right_end: RP11-176P17" FT misc_feature 9663534..9694353 FT /note="annotated region of clone" FT misc_feature 9667480 FT /note="Clone_left_end: RP11-527D15" FT misc_feature 9694253 FT /note="Clone_right_end: RP11-378H16" FT misc_feature 9667591..9833759 FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT repeat_region 9694321..9694424 FT /rpt_family="MER43" FT /note="83% identity: matches 45..148 of consensus" FT repeat_region 9694414..9694424 FT /note="TC repeat" FT exon 9694429..9694606 FT /note="GENSCAN prediction, score = 0.26" FT exon 9694453..9694510 FT /note="XPOUND prediction, score = 0.267" FT repeat_region 9694456..9694517 FT /rpt_family="MER43" FT /note="88% identity: matches 181..240 of consensus" FT repeat_region 9694476..9694487 FT /note="CCA repeat" FT exon complement(9694717..9694788) FT /note="MZEF prediction, score = 0.705" FT exon 9694885..9695305 FT /note="GENSCAN prediction, score = 3.08" FT repeat_region complement(9695541..9695605) FT /rpt_family="L1" FT /note="87% identity: matches 722..786 of consensus" FT repeat_region complement(9695773..9695864) FT /rpt_family="L1" FT /note="84% identity: matches 463..554 of consensus" FT exon complement(9697842..9697987) FT /note="GRAIL, score = 67%, comment = good" FT exon complement(9698654..9698804) FT /note="GRAIL, score = 71%, comment = good" FT STS 9699590..9699874 FT /standard_name="SHGC-89347 (D11S4975), Map: 9, Homo FT sapiens" FT /note="GenBank Accession Number: G61909" FT exon 9699910..9699985 FT /note="XPOUND prediction, score = 0.532" FT exon 9699994..9700111 FT /note="GRAIL, score = 57%, comment = good shadow" FT exon 9700096..9700111 FT /note="XPOUND prediction, score = 0.283" FT exon 9701571..9701654 FT /note="MZEF prediction, score = 0.854" FT repeat_region 9701837..9702121 FT /rpt_family="ALU" FT /note="87% identity: matches 520..803 of consensus" FT repeat_region complement(9701848..9701969) FT /rpt_family="L1" FT /note="87% identity: matches 464..585 of consensus" FT repeat_region 9702032..9702128 FT /rpt_type=INVERTED FT /note="IR1, 82% complementary to IR1' (36305..36400)" FT repeat_region complement(9702036..9702121) FT /rpt_family="L1" FT /note="90% identity: matches 159..244 of consensus" FT repeat_region 9702120..9702153 FT /rpt_family="ga repeat" FT /rpt_type=TANDEM FT /note="homology = 85.3%, counts = 17" FT repeat_region 9702127..9702143 FT /note="AG repeat" FT exon 9702443..9702474 FT /note="XPOUND prediction, score = 0.556" FT repeat_region 9703000..9703043 FT /rpt_family="THE" FT /note="95% identity: matches 10..53 of consensus" FT exon complement(9703180..9703266) FT /note="GRAIL, score = 61%, comment = good shadow" FT repeat_region 9703231..9703355 FT /rpt_family="THE" FT /note="88% identity: matches 251..376 of consensus" FT exon 9703450..9703548 FT /note="GRAIL, score = 71%, comment = good" FT repeat_region 9703895..9703990 FT /rpt_type=INVERTED FT /note="IR1', 82% complementary to IR1 (34442..34538)" FT repeat_region complement(9703911..9703945) FT /rpt_family="ALU" FT /note="97% identity: matches 377..411 of consensus" FT repeat_region 9704570..9704583 FT /note="AAC repeat" FT repeat_region 9705045..9705059 FT /note="CTTTT repeat" FT repeat_region 9706457..9706725 FT /rpt_family="L1" FT /note="82% identity: matches 161..424 of consensus" FT repeat_region complement(9706482..9706739) FT /rpt_family="ALU" FT /note="85% identity: matches 299..556 of consensus" FT exon complement(9707112..9707178) FT /note="MZEF prediction, score = 0.575" FT exon 9708014..9708081 FT /note="MZEF prediction, score = 0.829" FT exon 9708233..9708346 FT /note="GRAIL, score = 71%, comment = good" FT repeat_region 9710033..9710058 FT /rpt_type=INVERTED FT /note="IR2, 84% complementary to IR2' (42631..42656)" FT repeat_region 9710221..9710246 FT /rpt_type=INVERTED FT /note="IR2', 84% complementary to IR2 (42443..42468)" FT repeat_region 9710365..9710391 FT /rpt_type=INVERTED FT /note="IR3, 92% complementary to IR3' (42803..42829)" FT repeat_region 9710393..9710419 FT /rpt_type=INVERTED FT /note="IR3', 92% complementary to IR3 (42775..42801)" FT repeat_region 9710787..9710803 FT /rpt_type=INVERTED FT /note="IR4, 100% complementary to IR4' (43387..43403)" FT repeat_region 9710787..9710803 FT /note="AC repeat" FT exon 9710839..9710872 FT /note="XPOUND prediction, score = 0.685" FT repeat_region 9710954..9710968 FT /note="GAGC repeat" FT repeat_region 9710976..9710995 FT /note="GT repeat" FT repeat_region 9710977..9710993 FT /rpt_type=INVERTED FT /note="IR4', 100% complementary to IR4 (43197..43213)" FT exon 9710996..9711121 FT /note="GRAIL, score = 78%, comment = excellent" FT exon complement(9711023..9711102) FT /note="XPOUND prediction, score = 0.477" FT repeat_region 9711491..9711503 FT /note="TAA repeat" FT exon complement(9713762..9713775) FT /note="XPOUND prediction, score = 0.207" FT exon complement(9713963..9714024) FT /note="XPOUND prediction, score = 0.288" FT repeat_region 9715852..9715870 FT /note="TTA repeat" FT repeat_region complement(9715871..9715980) FT /rpt_family="L1" FT /note="98% identity: matches 540..649 of consensus" FT exon 9715917..9715954 FT /note="XPOUND prediction, score = 0.455" FT exon complement(9716013..9716081) FT /note="GRAIL, score = 71%, comment = good" FT repeat_region complement(9716045..9717466) FT /rpt_family="L1" FT /note="95% identity: matches 528..1953 of consensus" FT exon complement(9717249..9717452) FT /note="GRAIL, score = 47%, comment = marginal" FT exon 9718360..9718373 FT /note="XPOUND prediction, score = 0.275" FT exon 9718377..9718392 FT /note="XPOUND prediction, score = 0.207" FT exon complement(9718968..9719096) FT /note="GENSCAN prediction, score = 9.10" FT exon complement(9720010..9720181) FT /note="GRAIL, score = 53%, comment = good" FT exon complement(9720153..9720155) FT /note="XPOUND prediction, score = 0.201" FT exon complement(9720169..9720180) FT /note="XPOUND prediction, score = 0.227" FT repeat_region 9720703..9720887 FT /rpt_family="L1" FT /note="82% identity: matches 104..289 of consensus" FT repeat_region 9720711..9720756 FT /rpt_type=INVERTED FT /note="IR5, 76% complementary to IR5' (54879..54924)" FT repeat_region 9721038..9721079 FT /rpt_family="L1" FT /note="92% identity: matches 510..551 of consensus" FT repeat_region 9721060..9721125 FT /rpt_family="L1" FT /note="87% identity: matches 357..422 of consensus" FT exon complement(9722221..9722273) FT /note="XPOUND prediction, score = 0.576" FT exon 9722286..9722301 FT /note="XPOUND prediction, score = 0.314" FT repeat_region 9722469..9722514 FT /rpt_type=INVERTED FT /note="IR5', 76% complementary to IR5 (53121..53166)" FT exon 9722752..9722763 FT /note="XPOUND prediction, score = 0.266" FT repeat_region 9725124..9725230 FT /rpt_family="THE" FT /note="83% identity: matches 1..110 of consensus" FT repeat_region 9725191..9725281 FT /rpt_family="THE" FT /note="90% identity: matches 67..157 of consensus" FT repeat_region 9725364..9725433 FT /rpt_family="THE" FT /note="90% identity: matches 28..98 of consensus" FT exon 9725927..9725937 FT /note="XPOUND prediction, score = 0.230" FT exon complement(9726218..9726324) FT /note="GRAIL, score = 52%, comment = good" FT repeat_region complement(9727239..9727300) FT /rpt_family="L1" FT /note="88% identity: matches 464..525 of consensus" FT repeat_region 9727239..9727426 FT /rpt_family="ALU" FT /note="84% identity: matches 72..258 of consensus" FT repeat_region 9727452..9727465 FT /note="AAATT repeat" FT exon 9727806..9727816 FT /note="XPOUND prediction, score = 0.247" FT repeat_region 9727944..9728272 FT /rpt_family="THE" FT /note="82% identity: matches 6..334 of consensus" FT exon 9729249..9729262 FT /note="XPOUND prediction, score = 0.376" FT exon 9730954..9731039 FT /note="MZEF prediction, score = 0.857" FT exon complement(9731380..9731426) FT /note="GRAIL, score = 93%, comment = excellent" FT repeat_region complement(9731474..9731625) FT /rpt_family="L1" FT /note="94% identity: matches 406..557 of consensus" FT repeat_region 9731625..9731777 FT /rpt_family="L1" FT /note="94% identity: matches 313..469 of consensus" FT exon 9732033..9732110 FT /note="GRAIL, score = 45%, comment = marginal shadow" FT exon complement(9732039..9732180) FT /note="GRAIL, score = 53%, comment = good" FT exon 9732118..9732174 FT /note="GENSCAN prediction, score = 3.56" FT repeat_region 9732344..9732361 FT /note="AAAC repeat" FT STS 9733079..9733299 FT /standard_name="SHGC-62953 (D11S4975), Map: 9, Homo FT sapiens" FT /note="GenBank Accession Number: G48265" FT exon 9733200..9733364 FT /note="GENSCAN prediction, score = 3.03" FT exon 9733260..9733364 FT /note="GRAIL, score = 40%, comment = marginal" FT exon 9733644..9733763 FT /note="GRAIL, score = 40%, comment = marginal" FT exon 9735366..9735450 FT /note="MZEF prediction, score = 0.570" FT exon 9735441..9735450 FT /note="XPOUND prediction, score = 0.202" FT exon 9735661..9735679 FT /note="XPOUND prediction, score = 0.227" FT exon 9735956..9736013 FT /note="MZEF prediction, score = 0.609" FT repeat_region 9736292..9736302 FT /note="TC repeat" FT repeat_region complement(9737575..9737614) FT /rpt_family="L1" FT /note="95% identity: matches 1362..1401 of consensus" FT repeat_region 9738011..9738103 FT /rpt_family="L1" FT /note="95% identity: matches 1677..1769 of consensus" FT exon 9738037..9738100 FT /note="GRAIL, score = 52%, comment = good" FT exon 9738049..9738100 FT /note="XPOUND prediction, score = 0.261" FT repeat_region 9738121..9738249 FT /rpt_family="L1" FT /note="95% identity: matches 2301..2429 of consensus" FT repeat_region 9738268..9738281 FT /note="AAC repeat" FT repeat_region 9738428..9738440 FT /note="TCAC repeat" FT repeat_region 9738462..9738556 FT /rpt_family="L1" FT /note="85% identity: matches 161..255 of consensus" FT repeat_region complement(9738469..9738738) FT /rpt_family="ALU" FT /note="85% identity: matches 4..275 of consensus" FT repeat_region 9738609..9738730 FT /rpt_family="L1" FT /note="90% identity: matches 464..585 of consensus" FT exon complement(9739200..9739306) FT /note="MZEF prediction, score = 0.546" FT exon 9739266..9739277 FT /note="XPOUND prediction, score = 0.265" FT exon complement(9739407..9739455) FT /note="GRAIL, score = 79%, comment = excellent" FT repeat_region 9739625..9739642 FT /rpt_type=INVERTED FT /note="IR6, 100% complementary to IR6' (73856..73873)" FT repeat_region 9739821..9739834 FT /note="AT repeat" FT repeat_region 9740376..9740602 FT /rpt_family="L1" FT /note="87% identity: matches 245..468 of consensus" FT repeat_region complement(9740376..9740666) FT /rpt_family="ALU" FT /note="88% identity: matches 326..611 of consensus" FT exon 9740403..9740422 FT /note="XPOUND prediction, score = 0.340" FT exon complement(9741029..9741090) FT /note="XPOUND prediction, score = 0.434" FT repeat_region 9741446..9741463 FT /rpt_type=INVERTED FT /note="IR6', 100% complementary to IR6 (72035..72052)" FT repeat_region complement(9741480..9742078) FT /rpt_family="L1" FT /note="90% identity: matches 843..1441 of consensus" FT exon complement(9741623..9741763) FT /note="GRAIL, score = 49%, comment = marginal" FT exon complement(9741830..9741902) FT /note="MZEF prediction, score = 0.733" FT repeat_region complement(9742078..9742221) FT /rpt_family="L1" FT /note="91% identity: matches 819..963 of consensus" FT exon 9742279..9742413 FT /note="GRAIL, score = 40%, comment = marginal shadow" FT exon complement(9743521..9743530) FT /note="XPOUND prediction, score = 0.204" FT exon complement(9743610..9743622) FT /note="XPOUND prediction, score = 0.205" FT repeat_region 9743732..9743769 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 19" FT repeat_region 9743732..9743770 FT /note="AC repeat" FT exon complement(9744546..9744576) FT /note="XPOUND prediction, score = 0.379" FT STS 9746751..9747055 FT /standard_name="SHGC-106109 (D11S4975), Map: 9, Homo FT sapiens" FT /note="GenBank Accession Number: G58859" FT repeat_region complement(9747563..9747841) FT /rpt_family="ALU" FT /note="84% identity: matches 146..418 of consensus" FT exon complement(9747628..9747650) FT /note="XPOUND prediction, score = 0.373" FT repeat_region 9747651..9747844 FT /rpt_family="L1" FT /note="82% identity: matches 398..588 of consensus" FT exon 9747995..9748053 FT /note="GRAIL, score = 48%, comment = marginal" FT exon complement(9748738..9748758) FT /note="MZEF prediction, score = 0.583" FT repeat_region 9749032..9749043 FT /note="CTT repeat" FT exon complement(9749322..9749367) FT /note="XPOUND prediction, score = 0.371" FT repeat_region 9750634..9750645 FT /note="TG repeat" FT exon complement(9751028..9751073) FT /note="MZEF prediction, score = 0.741" FT exon complement(9752105..9752174) FT /note="MZEF prediction, score = 0.663" FT exon complement(9754009..9754048) FT /note="MZEF prediction, score = 0.819" FT exon complement(9754487..9754506) FT /note="XPOUND prediction, score = 0.386" FT exon complement(9754991..9755015) FT /note="XPOUND prediction, score = 0.274" FT exon complement(9755959..9755969) FT /note="XPOUND prediction, score = 0.206" FT exon complement(9757861..9757935) FT /note="MZEF prediction, score = 0.767" FT exon complement(9759298..9759300) FT /note="XPOUND prediction, score = 0.236" FT exon complement(9759308..9759310) FT /note="XPOUND prediction, score = 0.206" FT repeat_region 9759576..9759701 FT /rpt_family="L1" FT /note="84% identity: matches 161..286 of consensus" FT repeat_region complement(9759576..9759710) FT /rpt_family="ALU" FT /note="90% identity: matches 130..264 of consensus" FT repeat_region 9759739..9759836 FT /rpt_family="L1" FT /note="87% identity: matches 323..418 of consensus" FT repeat_region complement(9759739..9759856) FT /rpt_family="ALU" FT /note="87% identity: matches 1..118 of consensus" FT repeat_region 9760597..9760654 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 98.3%, counts = 29" FT repeat_region 9760600..9760654 FT /note="AC repeat" FT repeat_region 9760655..9760667 FT /note="TA repeat" FT exon complement(9760690..9760703) FT /note="XPOUND prediction, score = 0.221" FT exon 9761338..9761409 FT /note="MZEF prediction, score = 0.635" FT exon complement(9761436..9761447) FT /note="XPOUND prediction, score = 0.211" FT exon complement(9762900..9762989) FT /note="GRAIL, score = 52%, comment = good" FT exon complement(9764421..9764452) FT /note="XPOUND prediction, score = 0.519" FT repeat_region 9765674..9765804 FT /rpt_family="L1" FT /note="88% identity: matches 240..370 of consensus" FT repeat_region complement(9765674..9765827) FT /rpt_family="ALU" FT /note="92% identity: matches 435..588 of consensus" FT repeat_region 9765844..9765956 FT /rpt_family="L1" FT /note="95% identity: matches 409..521 of consensus" FT repeat_region complement(9765844..9765959) FT /rpt_family="ALU" FT /note="99% identity: matches 329..444 of consensus" FT misc_feature 9765852..9765963 FT /note="CpG_island (%GC=65.2, o/e=1.00, #CpGs=10)" FT exon complement(9765863..9765899) FT /note="XPOUND prediction, score = 0.829" FT exon complement(9766063..9766099) FT /note="XPOUND prediction, score = 0.281" FT exon complement(9766810..9766851) FT /note="GRAIL, score = 88%, comment = excellent" FT /note="MZEF prediction, score = 0.999" FT exon complement(9768839..9768864) FT /note="XPOUND prediction, score = 0.286" FT exon complement(9768958..9768989) FT /note="XPOUND prediction, score = 0.304" FT repeat_region 9769101..9769155 FT /rpt_family="agaaaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 78.2%, counts = 5" FT repeat_region complement(9769344..9769492) FT /rpt_family="ALU" FT /note="91% identity: matches 133..281 of consensus" FT repeat_region 9769344..9769492 FT /rpt_family="L1" FT /note="87% identity: matches 245..393 of consensus" FT repeat_region complement(9769508..9769615) FT /rpt_family="ALU" FT /note="95% identity: matches 386..493 of consensus" FT repeat_region 9769508..9769625 FT /rpt_family="L1" FT /note="89% identity: matches 409..526 of consensus" FT exon complement(9769527..9769553) FT /note="XPOUND prediction, score = 0.236" FT repeat_region complement(9769645..9770307) FT /rpt_family="L1" FT /note="90% identity: matches 767..1430 of consensus" FT exon complement(9769773..9769917) FT /note="GRAIL, score = 66%, comment = good" FT exon complement(9769897..9769921) FT /note="XPOUND prediction, score = 0.362" FT exon 9772169..9772270 FT /note="GRAIL, score = 73%, comment = good" FT exon complement(9773288..9773412) FT /note="MZEF prediction, score = 0.568" FT exon 9773956..9774037 FT /note="GRAIL, score = 75%, comment = excellent" FT /note="MZEF prediction, score = 0.805" FT exon 9774101..9774187 FT /note="GENSCAN prediction, score = 6.29" FT exon 9775637..9775760 FT /note="MZEF prediction, score = 0.963" FT repeat_region 9775670..9775779 FT /rpt_family="ALU" FT /note="96% identity: matches 299..408 of consensus" FT repeat_region complement(9775670..9775779) FT /rpt_family="L1" FT /note="91% identity: matches 409..518 of consensus" FT repeat_region 9775789..9775803 FT /note="AAAC repeat" FT repeat_region complement(9775808..9775954) FT /rpt_family="L1" FT /note="86% identity: matches 245..392 of consensus" FT repeat_region 9775820..9775954 FT /rpt_family="ALU" FT /note="94% identity: matches 434..569 of consensus" FT repeat_region 9777303..9777354 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 80.8%, counts = 26" FT repeat_region 9777326..9777354 FT /note="CA repeat" FT repeat_region 9777422..9777502 FT /rpt_family="ALU" FT /note="86% identity: matches 10..90 of consensus" FT exon complement(9778293..9778372) FT /note="GRAIL, score = 50%, comment = good" FT exon 9778623..9778652 FT /note="GENSCAN prediction, score = 3.71" FT repeat_region 9778907..9779014 FT /rpt_family="L1" FT /note="84% identity: matches 5..118 of consensus" FT repeat_region 9779185..9779263 FT /rpt_family="L1" FT /note="86% identity: matches 1075..1153 of consensus" FT repeat_region 9779388..9779498 FT /rpt_family="L1" FT /note="87% identity: matches 8..118 of consensus" FT repeat_region 9779599..9779708 FT /rpt_family="L1" FT /note="86% identity: matches 5373..5482 of consensus" FT repeat_region 9779707..9779737 FT /rpt_type=INVERTED FT /note="IR7, 90% complementary to IR7' (112177..112207)" FT repeat_region 9779767..9779797 FT /rpt_type=INVERTED FT /note="IR7', 90% complementary to IR7 (112117..112147)" FT repeat_region 9779819..9779915 FT /rpt_family="L1" FT /note="89% identity: matches 70..165 of consensus" FT exon complement(9779974..9780007) FT /note="XPOUND prediction, score = 0.512" FT repeat_region 9780050..9780141 FT /rpt_family="L1" FT /note="88% identity: matches 330..420 of consensus" FT exon complement(9780100..9780124) FT /note="XPOUND prediction, score = 0.301" FT repeat_region 9780158..9780297 FT /rpt_family="L1" FT /note="86% identity: matches 32..171 of consensus" FT repeat_region 9780326..9780361 FT /rpt_family="L1" FT /note="97% identity: matches 641..676 of consensus" FT repeat_region 9781812..9782082 FT /rpt_family="L1" FT /note="90% identity: matches 246..518 of consensus" FT repeat_region complement(9781812..9782090) FT /rpt_family="ALU" FT /note="93% identity: matches 1..280 of consensus" FT exon complement(9781993..9782154) FT /note="MZEF prediction, score = 0.591" FT exon 9783612..9783786 FT /note="MZEF prediction, score = 0.784" FT exon complement(9783896..9783918) FT /note="XPOUND prediction, score = 0.580" FT repeat_region 9784762..9784819 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 74.1%, counts = 29" FT repeat_region 9784764..9784774 FT /note="TG repeat" FT repeat_region 9784764..9784791 FT /rpt_type=INVERTED FT /note="IR8, 96% complementary to IR8' (117262..117288)" FT repeat_region 9784852..9784878 FT /rpt_type=INVERTED FT /note="IR8', 96% complementary to IR8 (117174..117201)" FT repeat_region 9784868..9784887 FT /note="AC repeat" FT repeat_region 9784868..9784897 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 86.7%, counts = 15" FT exon complement(9785423..9785436) FT /note="XPOUND prediction, score = 0.330" FT exon 9785580..9785661 FT /note="GRAIL, score = 45%, comment = marginal" FT exon complement(9785655..9785677) FT /note="XPOUND prediction, score = 0.311" FT repeat_region complement(9786614..9786666) FT /rpt_family="L1" FT /note="96% identity: matches 1060..1112 of consensus" FT repeat_region 9786664..9786772 FT /rpt_family="L1" FT /note="95% identity: matches 1276..1384 of consensus" FT repeat_region 9786863..9787136 FT /rpt_family="ALU" FT /note="79% identity: matches 1..282 of consensus" FT repeat_region 9786923..9787164 FT /rpt_type=INVERTED FT /note="IR9, 78% complementary to IR9' (120183..120422)" FT repeat_region complement(9786935..9786976) FT /rpt_family="L1" FT /note="95% identity: matches 474..515 of consensus" FT repeat_region complement(9787053..9787138) FT /rpt_family="L1" FT /note="87% identity: matches 159..244 of consensus" FT STS 9787270..9787394 FT /standard_name="SHGC-11668 (D7S467), Map: 9, Homo sapiens" FT /note="GenBank Accession Number: G17357" FT exon complement(9787302..9787374) FT /note="GRAIL, score = 66%, comment = good" FT repeat_region 9787766..9788083 FT /rpt_type=INVERTED FT /note="IR10, 81% complementary to IR10' (120680..120995)" FT repeat_region 9787773..9787798 FT /note="TTA repeat" FT repeat_region 9787773..9787799 FT /rpt_family="tta repeat" FT /rpt_type=TANDEM FT /note="homology = 96.3%, counts = 9" FT repeat_region 9787773..9788012 FT /rpt_type=INVERTED FT /note="IR9', 78% complementary to IR9 (119333..119574)" FT repeat_region complement(9787799..9788083) FT /rpt_family="ALU" FT /note="86% identity: matches 1..281 of consensus" FT repeat_region 9787808..9788069 FT /rpt_family="L1" FT /note="85% identity: matches 169..424 of consensus" FT repeat_region 9788270..9788535 FT /rpt_family="ALU" FT /note="90% identity: matches 1..266 of consensus" FT repeat_region complement(9788270..9788535) FT /rpt_family="L1" FT /note="88% identity: matches 261..526 of consensus" FT repeat_region 9788270..9788585 FT /rpt_type=INVERTED FT /note="IR10', 81% complementary to IR10 (120176..120493)" FT exon 9789186..9789256 FT /note="MZEF prediction, score = 0.956" FT exon complement(9789273..9789307) FT /note="XPOUND prediction, score = 0.339" FT repeat_region complement(9789515..9789796) FT /rpt_family="L1" FT /note="88% identity: matches 245..527 of consensus" FT repeat_region 9789516..9789796 FT /rpt_family="ALU" FT /note="91% identity: matches 1..281 of consensus" FT repeat_region 9793484..9793496 FT /note="ATGG repeat" FT exon complement(9794058..9794122) FT /note="MZEF prediction, score = 0.713" FT repeat_region 9794101..9794242 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 72.5%, counts = 71" FT repeat_region 9794143..9794187 FT /rpt_type=INVERTED FT /note="IR11, 80% complementary to IR11' (126606..126650)" FT repeat_region 9794160..9794173 FT /note="TA repeat" FT repeat_region 9794190..9794202 FT /note="TG repeat" FT repeat_region 9794196..9794240 FT /rpt_type=INVERTED FT /note="IR11', 80% complementary to IR11 (126553..126597)" FT repeat_region 9794203..9794217 FT /note="AT repeat" FT repeat_region 9794231..9794242 FT /note="AT repeat" FT exon 9794399..9794525 FT /note="MZEF prediction, score = 0.981" FT repeat_region 9795646..9795660 FT /note="AAATA repeat" FT exon complement(9795791..9795857) FT /note="MZEF prediction, score = 0.811" FT exon complement(9795794..9795834) FT /note="XPOUND prediction, score = 0.271" FT repeat_region 9796062..9796091 FT /rpt_type=INVERTED FT /note="IR12, 83% complementary to IR12' (129747..129776)" FT repeat_region 9796202..9796215 FT /note="AAG repeat" FT exon complement(9796903..9796940) FT /note="MZEF prediction, score = 0.639" FT repeat_region 9797337..9797366 FT /rpt_type=INVERTED FT /note="IR12', 83% complementary to IR12 (128472..128501)" FT exon 9797472..9797574 FT /note="GRAIL, score = 43%, comment = marginal" FT repeat_region complement(9797575..9797696) FT /rpt_family="L1" FT /note="86% identity: matches 464..585 of consensus" FT repeat_region 9797575..9797737 FT /rpt_family="ALU" FT /note="88% identity: matches 468..629 of consensus" FT repeat_region 9797747..9797841 FT /rpt_family="ALU" FT /note="83% identity: matches 758..852 of consensus" FT exon complement(9798609..9798663) FT /note="GRAIL, score = 54%, comment = good shadow" FT exon complement(9800297..9800307) FT /note="XPOUND prediction, score = 0.532" FT repeat_region 9801045..9801058 FT /note="TTAT repeat" FT exon 9805293..9805424 FT /note="GRAIL, score = 77%, comment = excellent" FT exon complement(9805755..9805825) FT /note="GRAIL, score = 83%, comment = excellent shadow" FT exon 9805966..9806078 FT /note="MZEF prediction, score = 0.608" FT exon complement(9806374..9806387) FT /note="XPOUND prediction, score = 0.267" FT exon 9807167..9807236 FT /note="GENSCAN prediction, score = 0.97" FT repeat_region 9808252..9808265 FT /note="AATTA repeat" FT repeat_region complement(9808825..9808887) FT /rpt_family="ALU" FT /note="87% identity: matches 971..1033 of consensus" FT repeat_region 9809259..9809285 FT /rpt_type=INVERTED FT /note="IR13, 85% complementary to IR13' (142544..142570)" FT repeat_region complement(9809287..9809552) FT /rpt_family="ALU" FT /note="90% identity: matches 314..582 of consensus" FT repeat_region 9809287..9809552 FT /rpt_family="L1" FT /note="86% identity: matches 246..515 of consensus" FT exon complement(9809497..9809512) FT /note="XPOUND prediction, score = 0.281" FT exon complement(9810038..9810079) FT /note="GRAIL, score = 57%, comment = good shadow" FT exon 9810079..9810135 FT /note="GENSCAN prediction, score = 3.61" FT /note="GRAIL, score = 79%, comment = excellent" FT repeat_region 9810134..9810160 FT /rpt_type=INVERTED FT /note="IR13', 85% complementary to IR13 (141669..141695)" FT repeat_region complement(9810241..9810291) FT /rpt_family="MER28" FT /note="90% identity: matches 114..164 of consensus" FT exon complement(9810431..9810461) FT /note="XPOUND prediction, score = 0.311" FT repeat_region 9810438..9810505 FT /rpt_family="MER37" FT /note="86% identity: matches 28..95 of consensus" FT exon 9810807..9810896 FT /note="MZEF prediction, score = 0.648" FT repeat_region 9810978..9811144 FT /rpt_family="ALU" FT /note="87% identity: matches 22..188 of consensus" FT repeat_region complement(9811009..9811144) FT /rpt_family="L1" FT /note="84% identity: matches 746..882 of consensus" FT repeat_region complement(9811426..9811701) FT /rpt_family="L1" FT /note="87% identity: matches 250..526 of consensus" FT repeat_region 9811427..9811701 FT /rpt_family="ALU" FT /note="89% identity: matches 1..275 of consensus" FT repeat_region 9811708..9811721 FT /note="AAAAC repeat" FT repeat_region 9811738..9811825 FT /rpt_family="MER37" FT /note="86% identity: matches 163..251 of consensus" FT repeat_region complement(9812006..9812064) FT /rpt_family="MER37" FT /note="89% identity: matches 61..119 of consensus" FT exon complement(9812938..9812983) FT /note="XPOUND prediction, score = 0.278" FT repeat_region 9813742..9813801 FT /rpt_family="L1" FT /note="88% identity: matches 568..627 of consensus" FT exon complement(9814577..9814592) FT /note="XPOUND prediction, score = 0.245" FT exon 9814825..9815030 FT /note="MZEF prediction, score = 0.701" FT repeat_region complement(9814844..9814955) FT /rpt_family="ALU" FT /note="85% identity: matches 143..254 of consensus" FT repeat_region 9815143..9815190 FT /rpt_family="L1" FT /note="93% identity: matches 716..763 of consensus" FT exon 9815458..9815571 FT /note="GRAIL, score = 56%, comment = good" FT repeat_region 9816897..9816908 FT /note="TAA repeat" FT exon 9817367..9817404 FT /note="GRAIL, score = 94%, comment = excellent" FT /note="MZEF prediction, score = 0.829" FT exon complement(9817853..9817864) FT /note="XPOUND prediction, score = 0.217" FT exon complement(9818341..9818386) FT /note="GRAIL, score = 79%, comment = excellent shadow" FT repeat_region 9818639..9818892 FT /rpt_family="ALU" FT /note="87% identity: matches 151..404 of consensus" FT repeat_region complement(9818650..9818907) FT /rpt_family="L1" FT /note="83% identity: matches 169..424 of consensus" FT exon 9818687..9818734 FT /note="GRAIL, score = 68%, comment = good" FT exon 9818687..9818740 FT /note="XPOUND prediction, score = 0.512" FT exon 9819120..9819153 FT /note="XPOUND prediction, score = 0.486" FT repeat_region complement(9819519..9819633) FT /rpt_family="L1" FT /note="85% identity: matches 580..694 of consensus" FT exon 9819538..9819635 FT /note="MZEF prediction, score = 0.835" FT repeat_region complement(9819676..9819759) FT /rpt_family="L1" FT /note="85% identity: matches 231..314 of consensus" FT repeat_region complement(9819772..9819820) FT /rpt_family="L1" FT /note="92% identity: matches 150..199 of consensus" FT repeat_region complement(9819854..9819940) FT /rpt_family="L1" FT /note="86% identity: matches 111..197 of consensus" FT exon complement(9819870..9820080) FT /note="MZEF prediction, score = 0.745" FT repeat_region complement(9820044..9820125) FT /rpt_family="L1" FT /note="85% identity: matches 195..276 of consensus" FT repeat_region complement(9820148..9820249) FT /rpt_family="L1" FT /note="84% identity: matches 795..896 of consensus" FT repeat_region complement(9820279..9820904) FT /rpt_family="L1" FT /note="80% identity: matches 220..846 of consensus" FT repeat_region 9820509..9820520 FT /note="TTG repeat" FT repeat_region complement(9820840..9821111) FT /rpt_family="L1" FT /note="80% identity: matches 509..792 of consensus" FT exon complement(9821468..9821617) FT /note="MZEF prediction, score = 0.586" FT repeat_region 9821541..9821571 FT /rpt_type=INVERTED FT /note="IR14, 90% complementary to IR14' (154335..154364)" FT repeat_region 9821925..9821954 FT /rpt_type=INVERTED FT /note="IR14', 90% complementary to IR14 (153951..153981)" FT repeat_region 9821935..9821953 FT /note="TA repeat" FT repeat_region 9822141..9822395 FT /rpt_family="ALU" FT /note="88% identity: matches 158..412 of consensus" FT repeat_region complement(9822164..9822413) FT /rpt_family="L1" FT /note="84% identity: matches 157..405 of consensus" FT exon 9822198..9822235 FT /note="XPOUND prediction, score = 0.466" FT exon complement(9822364..9822383) FT /note="XPOUND prediction, score = 0.382" FT repeat_region 9822407..9822546 FT /rpt_family="taaaatatatataatatata repeat" FT /rpt_type=TANDEM FT /note="homology = 74.3%, counts = 7" FT repeat_region 9822708..9822735 FT /rpt_type=INVERTED FT /note="IR15, 85% complementary to IR15' (156634..156661)" FT exon 9822805..9822905 FT /note="MZEF prediction, score = 0.575" FT repeat_region 9822817..9822871 FT /rpt_family="L1" FT /note="90% identity: matches 1087..1141 of consensus" FT repeat_region 9822971..9823079 FT /rpt_family="L1" FT /note="82% identity: matches 1796..1904 of consensus" FT repeat_region complement(9823128..9823309) FT /rpt_family="THE" FT /note="88% identity: matches 167..349 of consensus" FT repeat_region complement(9823359..9823475) FT /rpt_family="THE" FT /note="86% identity: matches 50..167 of consensus" FT repeat_region 9823539..9823648 FT /rpt_family="L1" FT /note="85% identity: matches 2725..2834 of consensus" FT repeat_region 9823929..9824002 FT /rpt_family="L1" FT /note="91% identity: matches 665..738 of consensus" FT repeat_region 9824224..9824251 FT /rpt_type=INVERTED FT /note="IR15', 85% complementary to IR15 (155118..155145)" FT repeat_region 9825277..9825434 FT /rpt_family="ag repeat" FT /rpt_type=TANDEM FT /note="homology = 75.3%, counts = 79" FT repeat_region 9825323..9825333 FT /note="AG repeat" FT repeat_region 9825435..9825504 FT /rpt_family="ga repeat" FT /rpt_type=TANDEM FT /note="homology = 78.6%, counts = 35" FT repeat_region 9826735..9828651 FT /rpt_family="L1" FT /note="93% identity: matches 208..2132 of consensus" FT exon 9826882..9827841 FT /note="GENSCAN prediction, score = 16.00" FT exon 9826931..9827082 FT /note="MZEF prediction, score = 0.657" FT exon 9827016..9827082 FT /note="GRAIL, score = 52%, comment = good" FT exon 9828235..9828350 FT /note="GRAIL, score = 54%, comment = good" FT exon 9828436..9828499 FT /note="GRAIL, score = 78%, comment = excellent" FT exon complement(9828579..9828610) FT /note="XPOUND prediction, score = 0.632" FT exon complement(9828618..9828626) FT /note="XPOUND prediction, score = 0.220" FT repeat_region 9830099..9830230 FT /rpt_family="tttattaatatt repeat" FT /rpt_type=TANDEM FT /note="homology = 62.1%, counts = 11" FT exon complement(9830480..9830510) FT /note="MZEF prediction, score = 0.562" FT exon 9831078..9831180 FT /note="MZEF prediction, score = 0.650" FT exon complement(9831472..9831568) FT /note="GRAIL, score = 79%, comment = excellent shadow" FT exon complement(9831506..9831568) FT /note="XPOUND prediction, score = 0.526" FT exon 9831528..9831594 FT /note="GRAIL, score = 85%, comment = excellent" FT exon complement(9832722..9832743) FT /note="XPOUND prediction, score = 0.533" FT repeat_region complement(9833173..9833471) FT /rpt_family="MER11" FT /note="92% identity: matches 25..328 of consensus" FT exon complement(9833179..9833221) FT /note="XPOUND prediction, score = 0.349" FT repeat_region complement(9833477..9833641) FT /rpt_family="MER11" FT /note="87% identity: matches 97..265 of consensus" FT misc_feature 9833760..9872247 FT /note="annotated region of clone" FT misc_feature 9872248..10009930 FT /note="annotated region of clone" FT misc_feature 9941942 FT /note="Clone_left_end: RP11-19G1" FT mRNA complement(join(AL157826.8:60286..60301, FT AL513422.2:66943..66981,AL513422.2:99220..99261, FT 9938507..9938610,AL390723.21:23888..23960, FT AL137069.15:69098..69152,AL135790.7:135511..135814)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-002" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: ESTs: Em:BI917145.1" FT mRNA complement(join(AL356584.21:27267..27607, FT AL356584.21:27706..27894,AL356584.21:132432..132573, FT AL356584.21:135814..135959,AL583805.7:69306..69472, FT AL353638.15:37027..37065,AL591133.7:42567..42626, FT AL354722.10:104290..104323,AL354722.10:121593..121664, FT AL157826.8:60286..60335,AL513422.2:66943..66981, FT AL513422.2:99220..99261,9938507..9938610, FT AL390723.21:23888..23960,AL137069.15:69098..69152, FT AL135790.7:135511..135618,AL135790.7:135801..135836)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-001" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:BC028038.1" FT /note="match: ESTs: Em:AA461176.1 Em:AA775818.1 FT Em:BI918807.1" FT misc_feature 10009830 FT /note="Clone_right_end: RP11-19A22" FT misc_feature 10009931..10104473 FT /note="annotated region of clone" FT misc_feature 10104274 FT /note="Clone_left_end: RP11-299F23" FT mRNA complement(join(AL157826.8:60286..60301, FT AL513422.2:66943..66981,AL513422.2:99220..99261, FT AL441884.5:66360..66463,10033718..10033790, FT AL137069.15:69098..69152,AL135790.7:135511..135814)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-002" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: ESTs: Em:BI917145.1" FT mRNA complement(join(AL356584.21:27267..27607, FT AL356584.21:27706..27894,AL356584.21:132432..132573, FT AL356584.21:135814..135959,AL583805.7:69306..69472, FT AL353638.15:37027..37065,AL591133.7:42567..42626, FT AL354722.10:104290..104323,AL354722.10:121593..121664, FT AL157826.8:60286..60335,AL513422.2:66943..66981, FT AL513422.2:99220..99261,AL441884.5:66360..66463, FT 10033718..10033790,AL137069.15:69098..69152, FT AL135790.7:135511..135618,AL135790.7:135801..135836)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-001" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:BC028038.1" FT /note="match: ESTs: Em:AA461176.1 Em:AA775818.1 FT Em:BI918807.1" FT misc_feature 10104474..10269871 FT /note="annotated region of clone" FT misc_feature 10242621..10242647 FT /note="Single clone region. Assembly confirmed by FT restriction enzyme digest data" FT misc_feature 10269872..10273865 FT /note="annotated region of clone" FT misc_feature 10271866 FT /note="Clone_left_end: RP11-167C5" FT misc_feature 10271871 FT /note="Clone_right_end: RP11-299F23" FT misc_feature 10273866..10443717 FT /note="annotated region of clone" FT misc_feature 10314841..10314988 FT /note="Sequence confirmed by AC025498 sequenced by WIBR" FT mRNA complement(join(AL157826.8:60286..60301, FT AL513422.2:66943..66981,AL513422.2:99220..99261, FT AL441884.5:66360..66463,AL390723.21:23888..23960, FT 10340963..10341017,AL135790.7:135511..135814)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-002" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: ESTs: Em:BI917145.1" FT mRNA complement(join(AL356584.21:27267..27607, FT AL356584.21:27706..27894,AL356584.21:132432..132573, FT AL356584.21:135814..135959,AL583805.7:69306..69472, FT AL353638.15:37027..37065,AL591133.7:42567..42626, FT AL354722.10:104290..104323,AL354722.10:121593..121664, FT AL157826.8:60286..60335,AL513422.2:66943..66981, FT AL513422.2:99220..99261,AL441884.5:66360..66463, FT AL390723.21:23888..23960,10340963..10341017, FT AL135790.7:135511..135618,AL135790.7:135801..135836)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-001" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:BC028038.1" FT /note="match: ESTs: Em:AA461176.1 Em:AA775818.1 FT Em:BI918807.1" FT misc_feature 10408043 FT /note="Clone_left_end: RP11-50C21" FT misc_feature 10441717 FT /note="Clone_right_end: RP11-167C5" FT misc_feature 10443718..10478887 FT /note="annotated region of clone" FT misc_feature 10474888 FT /note="Clone_left_end: RP11-87N24" FT misc_feature 10478888..10653160 FT /note="annotated region of clone" FT CDS 10532145..10532411 FT /pseudo FT /locus_tag="RP11-87N24.1-001" FT /product="ribosomal protein S12 (RPS12) pseudogene" FT /note="match: proteins: Sw:O13019 Sw:O14062 Sw:O59936 FT Sw:O74322 Sw:P25398 Sw:P46405 Sw:P47840 Sw:P49196 Sw:P63324 FT Sw:P80455 Sw:P80455 Sw:Q9SKZ3 Sw:Q9SMI3 Sw:Q9XHS0" FT mRNA complement(join(AL157826.8:60286..60301, FT AL513422.2:66943..66981,AL513422.2:99220..99261, FT AL441884.5:66360..66463,AL390723.21:23888..23960, FT AL137069.15:69098..69152,10612398..10612701)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-002" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: ESTs: Em:BI917145.1" FT mRNA complement(join(AL356584.21:27267..27607, FT AL356584.21:27706..27894,AL356584.21:132432..132573, FT AL356584.21:135814..135959,AL583805.7:69306..69472, FT AL353638.15:37027..37065,AL591133.7:42567..42626, FT AL354722.10:104290..104323,AL354722.10:121593..121664, FT AL157826.8:60286..60335,AL513422.2:66943..66981, FT AL513422.2:99220..99261,AL441884.5:66360..66463, FT AL390723.21:23888..23960,AL137069.15:69098..69152, FT 10612398..10612505,10612688..10612723)) FT /gene="PTPRD" FT /locus_tag="RP11-60C15.1-001" FT /product="protein tyrosine phosphatase, receptor type, D" FT /note="match: cDNAs: Em:BC028038.1" FT /note="match: ESTs: Em:AA461176.1 Em:AA775818.1 FT Em:BI918807.1" FT mRNA join(10613202..10613426,10616617..10616669, FT 10617861..10618218) FT /locus_tag="RP11-87N24.2-001" FT /product="novel transcript" FT /note="match: ESTs: Em:BI601152.1" FT mRNA complement(join(10631750..10631785,10632083..10632203)) FT /locus_tag="RP11-87N24.3-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AA722133.1" FT misc_feature 10651160 FT /note="Clone_right_end: RP11-87N24" FT misc_feature 10728118 FT /note="Clone_left_end: RP11-421B23" FT misc_feature 10732118..10900577 FT /note="annotated region of clone" FT CDS 10777357..10777525 FT /pseudo FT /locus_tag="RP11-421B23.2-001" FT /product="pseudogene similar to part of ribosomal protein FT S3A RPS3A" FT /note="match: proteins: Sw:P49242 Sw:P61246 Sw:P97351 FT Sw:Q98TX2 Tr:Q564F3 Tr:Q564F3 Tr:Q9D1S3" FT CDS complement(10829752..10830308) FT /pseudo FT /locus_tag="RP11-421B23.1-001" FT /product="novel pseudogene" FT /note="match: proteins: Sw:O01513 Sw:O13835 Sw:P32899 FT Sw:Q01688 Sw:Q9NV31 Tr:Q9LFV1 Tr:Q9P406 Tr:Q9V832" FT misc_feature 10854529 FT /note="Clone_left_end: RP11-109M17" FT misc_feature 10897699..10897815 FT /note="Sequence from overlapping clone bA109M17 (AL162413) FT only. Assembly confirmed by restriction digest" FT misc_feature 10898577 FT /note="Clone_right_end: RP11-421B23" FT misc_feature 10900578..11012879 FT /note="annotated region of clone" FT misc_feature 10912437..10912500 FT /note="Single clone region. Sequence from reads from a FT short insert library derived from a single pUC clone. FT Restriction digest data confirm the assembly" FT misc_feature 10916490..10916581 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 10925291..10925374 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 10966814 FT /note="Clone_left_end: RP11-536I1" FT misc_feature 10995944..10996039 FT /note="Sequence from overlapping clone AL354952 FT (RP11-536I1). Assembly confirmed by restriction digest" FT misc_feature 11010879 FT /note="Clone_right_end: RP11-109M17" FT CDS join(11011748..11012879,AL354952.12:2001..2217) FT /pseudo FT /locus_tag="RP11-109M17.1-001" FT /product="pseudogene similar to part of A kinase (PRKA) FT anchor protein 8 AKAP8" FT /note="match: proteins: Sw:O43823 Sw:Q63014 Sw:Q9DBR0 FT Sw:Q9DBR0 Tr:Q8NE02 Tr:Q9UG73" FT misc_feature 11012880..11065643 FT /note="annotated region of clone" FT misc_feature 11061644 FT /note="Clone_left_end: RP11-293A1" FT CDS join(AL162413.26:113171..114302,11012880..11013096) FT /pseudo FT /locus_tag="RP11-109M17.1-001" FT /product="pseudogene similar to part of A kinase (PRKA) FT anchor protein 8 AKAP8" FT /note="match: proteins: Sw:O43823 Sw:Q63014 Sw:Q9DBR0 FT Sw:Q9DBR0 Tr:Q8NE02 Tr:Q9UG73" FT misc_feature 11118745..11118898 FT /note="Sequence from overlapping clone AL354942. Assembly FT confirmed by restriction digest data" FT misc_feature 11124562 FT /note="Clone_right_end: RP11-536I1" FT misc_feature 11178422 FT /note="Clone_left_end: RP11-23D5" FT misc_feature 11235554 FT /note="Clone_right_end: RP11-293A1" FT misc_feature 11237555..11313482 FT /note="annotated region of clone" FT mRNA complement(join(11275314..11275536,11276253..11276314)) FT /locus_tag="RP11-23D5.1-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AI017565.1" FT misc_feature 11313283 FT /note="Clone_left_end: RP11-165C19" FT misc_feature 11351874 FT /note="Clone_right_end: RP11-23D5" FT misc_feature 11399554 FT /note="Clone_left_end: RP11-352F21" FT misc_feature 11467041 FT /note="Clone_right_end: RP11-165C19" FT misc_feature 11598051 FT /note="Clone_right_end: RP11-352F21" FT misc_feature 11605868 FT /note="Clone_left_end: RP11-58B8" FT misc_feature 11649686 FT /note="Clone_right_end: RP11-32D4" FT misc_feature 11700978 FT /note="Clone_left_end: RP11-158N20" FT misc_feature 11772217 FT /note="Clone_right_end: RP11-58B8" FT misc_feature 11791343 FT /note="Clone_left_end: RP11-81P8" FT misc_feature 11864304..11864319 FT /note="Sequence from uni-directional dGTP big dye FT terminator reads only" FT misc_feature 11885443 FT /note="Clone_right_end: RP11-158N20" FT misc_feature 11896520 FT /note="Clone_left_end: RP11-493O12" FT misc_feature 11958971 FT /note="Clone_right_end: RP11-81P8" FT misc_feature 11996111 FT /note="Clone_left_end: RP11-74C3" FT misc_feature 12000111..12133032 FT /note="annotated region of clone" FT mRNA complement(join(12098660..12099015,12116821..12116865, FT AL357772.15:15239..15367,AL357772.15:28083..28113)) FT /locus_tag="RP11-74C3.1-001" FT /product="novel transcript" FT /note="match: ESTs: Em:BU569799.1" FT misc_feature 12074489..12074657 FT /note="Sequence from uni-directional primer reads and dGTP FT big dye terminator reads only" FT misc_feature 12082297 FT /note="Clone_right_end: RP11-493O12" FT misc_feature 12129033 FT /note="Clone_left_end: RP11-71E22" FT misc_feature 12133033..12293537 FT /note="annotated region of clone" FT mRNA complement(join(AL589678.9:100550..100905, FT AL589678.9:118711..118755,12146273..12146401, FT 12159117..12159147)) FT /locus_tag="RP11-74C3.1-001" FT /product="novel transcript" FT /note="match: ESTs: Em:BU569799.1" FT misc_feature 12172786 FT /note="Clone_right_end: RP11-74C3" FT misc_feature 12232923 FT /note="Clone_left_end: RP11-446F13" FT CDS 12287320..12288228 FT /pseudo FT /locus_tag="RP11-71E22.1-001" FT /product="novel pseudogene" FT /note="match: proteins: Sw:Q8BI36 Sw:Q8BI36 Sw:Q9P055 FT Sw:Q9P055 Sw:Q9P055 Sw:Q9P055 Sw:Q9P055 Tr:Q8SXK7 Tr:Q8SXK7 FT Tr:Q9CR05" FT misc_feature 12291539 FT /note="Clone_right_end: RP11-71E22" FT misc_feature 12352849 FT /note="Clone_left_end: RP11-364M22" FT misc_feature 12404297 FT /note="Clone_right_end: RP11-446F13" FT misc_feature 12487904 FT /note="Clone_left_end: RP11-328C23" FT misc_feature 12534076 FT /note="Clone_right_end: RP11-364M22" FT misc_feature 12621842 FT /note="Clone_left_end: RP11-3L8" FT misc_feature 12622042..12784092 FT /note="annotated region of clone" FT mRNA complement(join(12700100..12700626,12759551..12759623, FT AL157828.14:6627..6772,AL157828.14:30300..30352)) FT /locus_tag="RP11-3L8.3-001" FT /product="novel transcript" FT /note="match: ESTs: Em:BQ416907.1" FT misc_feature 12689631 FT /note="Clone_right_end: RP11-328C23" FT mRNA join(12693435..12693478,12693912..12694381, FT 12695515..12695837,12698451..12698655,12702271..12702442, FT 12704533..12704705,12707997..12708143,12708977..12710290) FT /gene="TYRP1" FT /locus_tag="RP11-3L8.1-001" FT /product="tyrosinase-related protein 1" FT /note="match: ESTs: Em:AA194212.1 Em:AA253269.1 FT Em:AA317583.1 Em:AA318325.1 Em:AA668457.1 Em:AL120804.1 FT Em:AL135552.1 Em:AL598164.1 Em:AL600069.1 Em:BF571082.1 FT Em:BF724562.1 Em:BG430403.1 Em:BG575042.1 Em:BI480884.1 FT Em:BI768674.1 Em:BI859377.1 Em:BI859475.1 Em:BM679064.1 FT Em:BM690932.1 Em:BM728174.1 Em:H86270.1 Em:H97702.1" FT /note="match: cDNAs: Em:AB005228.1 Em:AF076781.1 FT Em:AF136926.2 Em:AF400250.1 Em:AF445638.1 Em:AY052751.3 FT Em:X03687.1 Em:X51420.1 Em:X51455.1" FT CDS join(12693997..12694381,12695515..12695837, FT 12698451..12698655,12702271..12702442,12704533..12704705, FT 12707997..12708143,12708977..12709182) FT /gene="TYRP1" FT /locus_tag="RP11-3L8.1-001" FT /standard_name="OTTHUMP00000022788" FT /product="tyrosinase-related protein 1" FT /note="match: proteins: Sw:O57405 Sw:P07147 Sw:P17643 FT Sw:Q8WN57 Tr:Q8WX62 Tr:Q95J87 Tr:Q95JD8 Tr:Q95M39 Tr:Q9IBH8 FT Tr:Q9XSG9" FT /protein_id="CAD13328.1" FT /translation="MSAPKLLSLGCIFFPLLLFQQARAQFPRQCATVEALRSGMCCPDL FT SPVSGPGTDRCGSSSGRGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGN FT FSGHNCGTCRPGWRGAACDQRVLIVRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIAT FT RRSEEILGPDGNTPQFENISIYNYFVWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLT FT WHRYHLLRLEKDMQEMLQEPSFSLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNS FT VFSQWRVVCDSLEDYDTLGTLCNSTEDGPIRRNPAGNVARPMVQRLPEPQDVAQCLEVG FT LFDTPPFYSNSTNSFRNTVEGNDPTGKYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIF FT VLLHTFTDAVFDEWLRRYNADISTFPLENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDN FT LGYTYEIQWPSREFSVPEIIAIAVVGALLLVALIFGTASYLIRARRSMDEANQPLLTDQ FT YQCYAEEYEKLQNPNQSVV" FT mRNA join(12695720..12695837,12702271..12702442, FT 12704533..12704705,12707997..12708143,12708977..12709235) FT /gene="TYRP1" FT /locus_tag="RP11-3L8.1-002" FT /product="tyrosinase-related protein 1" FT /note="match: ESTs: Em:BG577256.1 Em:BI771438.1" FT CDS join(12695795..12695837,12702271..12702442, FT 12704533..12704705,12707997..12708143,12708977..12709182) FT /gene="TYRP1" FT /locus_tag="RP11-3L8.1-002" FT /standard_name="OTTHUMP00000022789" FT /product="tyrosinase-related protein 1" FT /protein_id="CAH73438.1" FT /translation="MAQVPPPASGERHAGTEDGPIRRNPAGNVARPMVQRLPEPQDVAQ FT CLEVGLFDTPPFYSNSTNSFRNTVEGNDPTGKYDPAVRSLHNLAHLFLNGTGGQTHLSP FT NDPIFVLLHTFTDAVFDEWLRRYNADISTFPLENAPIGHNRQYNMVPFWPPVTNTEMFV FT TAPDNLGYTYEIQWPSREFSVPEIIAIAVVGALLLVALIFGTASYLIRARRSMDEANQP FT LLTDQYQCYAEEYEKLQNPNQSVV" FT polyA_site complement(12700100) FT polyA_signal complement(12700118..12700123) FT mRNA join(12701645..12701815,12702271..12702442) FT /gene="TYRP1" FT /locus_tag="RP11-3L8.1-003" FT /product="tyrosinase-related protein 1" FT /note="match: ESTs: Em:T29084.1" FT mRNA join(12707671..12708143,12708977..12709294) FT /gene="TYRP1" FT /locus_tag="RP11-3L8.1-004" FT /product="tyrosinase-related protein 1" FT /note="match: ESTs: Em:BG740650.1" FT polyA_signal 12710253..12710258 FT polyA_site 12710290 FT misc_feature 12716079 FT /note="Clone_left_end: RP11-214I20" FT mRNA join(12775020..12776026,AL157828.14:37393..38138) FT /gene="C9orf150" FT /locus_tag="RP11-214I20.2-001" FT /product="chromosome 9 open reading frame 150" FT /note="match: ESTs: Em:AA468883.1 Em:AA551349.1 FT Em:AI347115.1 Em:AI740799.1 Em:AI802869.1 Em:AL523653.1 FT Em:AL523654.1 Em:AV696301.1 Em:AW915640.1 Em:BF436626.1 FT Em:BF472116.1 Em:BG215244.1 Em:BG219920.1 Em:BG968562.1 FT Em:BI438659.1 Em:BI438984.1 Em:BI455049.1 Em:BI824154.1 FT Em:BM288646.1 Em:BM718634.1 Em:BM739185.1 Em:BM739457.1 FT Em:BM770532.1 Em:BM770990.1 Em:BM973908.1 Em:BM981458.1 FT Em:R66945.1" FT /note="match: cDNAs: Em:AK003950.1 Em:AK074752.1 FT Em:AK095824.1 Em:BC021501.1 Em:BC030404.1" FT mRNA join(12775667..12776026,12777199..12777577) FT /gene="C9orf150" FT /locus_tag="RP11-214I20.2-002" FT /product="chromosome 9 open reading frame 150" FT /note="match: ESTs: Em:AI090443.1 Em:BQ000385.1" FT CDS join(12775715..12776026,AL157828.14:37393..37767) FT /gene="C9orf150" FT /locus_tag="RP11-214I20.2-001" FT /standard_name="OTTHUMP00000021058" FT /product="chromosome 9 open reading frame 150" FT /note="match: proteins: Sw:Q8IV03 Sw:Q8K2P1" FT /protein_id="CAH73439.1" FT /translation="MEDSPLPDLRDIELKLGRKVPESLVRSLRGEEPVPRERDRDPCGG FT SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKLHLLRQEM FT VNLRATDVRLMRQLLVINESIESIKWMIEEKATITSRGSSLSGSLCSLLESQSTSLRGS FT YNSLHDGSDGLDGISVGSYLDTLADDVPGHQTPSDLDQFSDSSLIEDSQALHKRPKLDS FT EYYCFG" FT polyA_signal 12777557..12777562 FT polyA_site 12777577 FT misc_feature 12783992 FT /note="Clone_right_end: RP11-3L8" FT misc_feature 12784093..12884919 FT /note="annotated region of clone" FT mRNA complement(join(AL138753.8:78159..78685, FT AL138753.8:137610..137682,12790619..12790764, FT 12814292..12814344)) FT /locus_tag="RP11-3L8.3-001" FT /product="novel transcript" FT /note="match: ESTs: Em:BQ416907.1" FT polyA_signal 12822104..12822109 FT polyA_site 12822130 FT misc_feature 12829604 FT /note="Clone_left_end: RP11-187K14" FT misc_feature 12884819 FT /note="Clone_right_end: RP11-214I20" FT mRNA join(AL138753.8:153079..154085,12821385..12822130) FT /gene="C9orf150" FT /locus_tag="RP11-214I20.2-001" FT /product="chromosome 9 open reading frame 150" FT /note="match: cDNAs: Em:AK003950.1 Em:AK074752.1 FT Em:AK095824.1 Em:BC021501.1 Em:BC030404.1" FT /note="match: ESTs: Em:AA468883.1 Em:AA551349.1 FT Em:AI347115.1 Em:AI740799.1 Em:AI802869.1 Em:AL523653.1 FT Em:AL523654.1 Em:AV696301.1 Em:AW915640.1 Em:BF436626.1 FT Em:BF472116.1 Em:BG215244.1 Em:BG219920.1 Em:BG968562.1 FT Em:BI438659.1 Em:BI438984.1 Em:BI455049.1 Em:BI824154.1 FT Em:BM288646.1 Em:BM718634.1 Em:BM739185.1 Em:BM739457.1 FT Em:BM770532.1 Em:BM770990.1 Em:BM973908.1 Em:BM981458.1 FT Em:R66945.1" FT CDS join(AL138753.8:153774..154085,12821385..12821759) FT /gene="C9orf150" FT /locus_tag="RP11-214I20.2-001" FT /standard_name="OTTHUMP00000021058" FT /product="chromosome 9 open reading frame 150" FT /note="match: proteins: Sw:Q8IV03 Sw:Q8K2P1" FT /protein_id="CAH71386.1" FT /translation="MEDSPLPDLRDIELKLGRKVPESLVRSLRGEEPVPRERDRDPCGG FT SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKLHLLRQEM FT VNLRATDVRLMRQLLVINESIESIKWMIEEKATITSRGSSLSGSLCSLLESQSTSLRGS FT YNSLHDGSDGLDGISVGSYLDTLADDVPGHQTPSDLDQFSDSSLIEDSQALHKRPKLDS FT EYYCFG" FT misc_feature 12958271 FT /note="Clone_left_end: RP11-382H24" FT misc_feature 12962271..13129930 FT /note="annotated region of clone" FT mRNA complement(join(13106497..13107110,13108935..13109058, FT 13109951..13110063,13110635..13110739,13112023..13112145, FT 13113010..13113053,13113930..13114020,13115247..13115333, FT 13119501..13119648,13121738..13121931,13123152..13123297, FT 13125215..13125389,13126515..13126589,13126679..13126771, FT AL353639.10:5893..5973,AL353639.10:8161..>8250)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-003" FT /product="multiple PDZ domain protein" FT /note="match: cDNAs: Em:AK074721.1" FT CDS complement(join(13106964..13107110,13108935..13109058, FT 13109951..13110063,13110635..13110739,13112023..13112145, FT 13113010..13113053,13113930..13114020,13115247..13115333, FT 13119501..13119648,13121738..13121931,13123152..13123297, FT 13125215..13125389,13126515..13126589,13126679..13126771, FT AL353639.10:5893..5973,AL353639.10:8161..>8250)) FT /codon_start=1 FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-003" FT /standard_name="OTTHUMP00000022779" FT /product="multiple PDZ domain protein" FT /protein_id="CAI40490.1" FT /translation="NKDAVNQMAVCPGNAVEPLPSNSENLQNKETEPTVTTSDAAVDLS FT SFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATDGRLKVGDQILAVDDE FT IVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASGEKKNSSQSLMVPQSG FT SPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTGLGLSIVGGSDTLLVN FT GIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKEEEVCDTLTIELQKKPGKGLGLSI FT VGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTV FT TLEVGRIKAGPFHSERRPSQSSQVSEGSLSSFTFPLSGSSTSESLESSSKKNALASEIQ FT GLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTIC FT GTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSVVTGHQQEPASSSLSFTGLTSSSIF FT QDDLGPPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGD FT QIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS" FT CDS complement(join(13106964..13107110,13108935..13109058, FT 13109951..13110063,13110635..13110739,13112023..13112145, FT 13113010..13113053,13113930..13114020,13115247..13115333, FT 13119501..13119648,13121738..13121931,13122086..13122169, FT 13123152..13123297,13125215..13125389,13126515..13126589, FT 13126679..13126771,AL353639.10:5893..5973, FT AL353639.10:8161..8251,AL353639.10:8781..8872, FT AL353639.10:10026..10222,AL353639.10:12056..12137)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-005" FT /standard_name="OTTHUMP00000022781" FT /product="multiple PDZ domain protein" FT /protein_id="CAI40491.1" FT /translation="MGSDHTQSSASKISQDVDKEDEFGYSWKNIRERYGTLTGELHMIE FT LEKGHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEINGQILYGRSH FT QNASSIIKCAPSKVKIIFIRNKDAVNQMAVCPGNAVEPLPSNSENLQNKETEPTVTTSD FT AAVDLSSFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATDGRLKVGDQI FT LAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASGEKKNSSQSL FT MVPQSGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTGLGLSIVGGS FT DTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRL FT TLYRDEAPYKEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGR FT LMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIKAGPFHSERRPSQSSQVS FT EGSLSSFTFPLSGSSTSESLESSSKKNALASEIQGLRTVEMKKGPTDSLGISIAGGVGS FT PLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEM FT QVVAGGDVSVVTGHQQEPASSSLSFTGLTSSSIFQDDLGPPQCKSITLERGPDGLGFSI FT VGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT FT KGTVTLMVLS" FT polyA_site complement(12972560) FT polyA_signal complement(12972571..12972576) FT CDS complement(12972847..12973438) FT /pseudo FT /locus_tag="RP11-382H24.3-001" FT /product="peroxiredoxin 1 (PRDX1) pseudogene" FT /note="match: proteins: Sw:P30048 Sw:P35700 Sw:P35700 FT Sw:Q63716 Tr:O93241 Tr:P35700 Tr:P35700 Tr:Q19265 Tr:Q9BGI4 FT Tr:Q9I886 Tr:Q9JKY1 Tr:Q9Z0V6" FT mRNA complement(join(13105703..13107110,13108935..13109058, FT 13109951..13110063,13110635..13110739,13112023..13112145, FT 13113010..13113053,13113930..13114020,13115247..13115333, FT 13119501..13119648,13121738..13121931,13122086..13122169, FT 13123152..13123297,13125215..13125389,13126515..13126589, FT 13126679..13126771,AL353639.10:5893..5973, FT AL353639.10:8161..8251,AL353639.10:8781..8872, FT AL353639.10:10026..10222,AL353639.10:12056..12218, FT AL353639.10:15535..15633,AL353639.10:19617..19727, FT AL353639.10:22580..22757,AL353639.10:30087..30179, FT AL353639.10:34760..34864,AL353639.10:40435..40633, FT AL353639.10:47821..47944,AL353639.10:48205..48486, FT AL353639.10:55487..55654,AL353639.10:58339..58455, FT AL353639.10:60853..61062,AL353639.10:62183..62368, FT AL353639.10:64200..64364,AL353639.10:65236..65382, FT AL353639.10:68190..68299,AL353639.10:77105..77176, FT AL353639.10:77985..78168,AL353639.10:88843..88931, FT AL353639.10:89249..89363,AL353639.10:91628..91837, FT AL353639.10:93441..93569,AL353639.10:94302..94515, FT AL353639.10:95640..95779,AL353639.10:96443..96652, FT AL162386.17:17882..18048,AL162386.17:20547..20576)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-001" FT /product="multiple PDZ domain protein" FT /note="match: ESTs: Em:AL694097.1 Em:AV696967.1 FT Em:AW160850.1 Em:BE780556.1 Em:BF675982.1 Em:BM718297.1 FT Em:BM919298.1 Em:BQ876382.1" FT /note="match: cDNAs: Em:AF326526.1 Em:AF326527.1 FT Em:AF326528.1 Em:AF326529.1 Em:AF326530.1 Em:AF326539.1 FT Em:AF326543.1 Em:AF326544.1 Em:AJ001319.1 Em:AJ001320.1 FT Em:AJ131869.1 Em:AK098775.1" FT CDS complement(join(13106964..13107110,13108935..13109058, FT 13109951..13110063,13110635..13110739,13112023..13112145, FT 13113010..13113053,13113930..13114020,13115247..13115333, FT 13119501..13119648,13121738..13121931,13122086..13122169, FT 13123152..13123297,13125215..13125389,13126515..13126589, FT 13126679..13126771,AL353639.10:5893..5973, FT AL353639.10:8161..8251,AL353639.10:8781..8872, FT AL353639.10:10026..10222,AL353639.10:12056..12218, FT AL353639.10:15535..15633,AL353639.10:19617..19727, FT AL353639.10:22580..22757,AL353639.10:30087..30179, FT AL353639.10:34760..34864,AL353639.10:40435..40633, FT AL353639.10:47821..47944,AL353639.10:48205..48486, FT AL353639.10:55487..55654,AL353639.10:58339..58455, FT AL353639.10:60853..61062,AL353639.10:62183..62368, FT AL353639.10:64200..64364,AL353639.10:65236..65382, FT AL353639.10:68190..68299,AL353639.10:77105..77176, FT AL353639.10:77985..78168,AL353639.10:88843..88931, FT AL353639.10:89249..89363,AL353639.10:91628..91837, FT AL353639.10:93441..93569,AL353639.10:94302..94515, FT AL353639.10:95640..95779,AL353639.10:96443..96652, FT AL162386.17:17882..18048,AL162386.17:20547..20562)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-001" FT /standard_name="OTTHUMP00000022777" FT /product="multiple PDZ domain protein" FT /note="match: proteins: Sw:O55164 Sw:O75970 Sw:O75970 FT Sw:Q63ZW7 Sw:Q8NI35 Sw:Q8VBX6 Sw:Q8VBX6 Tr:Q09515" FT /protein_id="CAI40493.1" FT /translation="MLEAIDKNRALHAAERLQTKLRERGDVANEDKLSLLKSVLQSPLF FT SQILSLQTSVQQLKDQVNIATSATSNIEYAHVPHLSPAVIPTLQNESFLLSPNNGNLEA FT LTGPGIPHINGKPACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGEL FT GIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIAR FT GSLPQLVSPIVSRSPSAASTISAHSNPVHWQHMETIELVNDGSGLGFGIIGGKATGVIV FT KTILPGGVADQHGRLCSGDHILKIGDTDLAGMSSEQVAQVLRQCGNRVKLMIARGAIEE FT RTAPTALGITLSSSPTSTPELRVDASTQKGEESETFDVELTKNVQGLGITIAGYIGDKK FT LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT FT LMRRGMKQEAELMSREDVTKDADLSPVNASIIKENYEKDEDFLSSTRNTNILPTEEEGY FT PLLSAEIEEIEDAQKQEAALLTKWQRIMGINYEIVVAHVSKFSENSGLGISLEATVGHH FT FIRSVLPEGPVGHSGKLFSGDELLEVNGITLLGENHQDVVNILKELPIEVTMVCCRRTV FT PPTTQSELDSLDLCDIELTEKPHVDLGEFIGSSETEDPVLAMTDAGQSTEEVQAPLAMW FT EAGIQHIELEKGSKGLGFSILDYQDPIDPASTVIIIRSLVPGGIAEKDGRLLPGDRLMF FT VNDVNLENSSLEEAVEALKGAPSGTVRIGVAKPLPLSPEEGYVSAKEDSFLYPPHSCEE FT AGLADKPLFRADLALVGTNDADLVDESTFESPYSPENDSIYSTQASILSLHGSSCGDGL FT NYGSSLPSSPPKDVIENSCDPVLDLHMSLEELYTQNLLQRQDENTPSVDISMGPASGFT FT INDYTPANAIEQQYECENTIVWTESHLPSEVISSAELPSVLPDSAGKGSEYLLEQSSLA FT CNAECVMLQNVSKESFERTINIAKGNSSLGMTVSANKDGLGMIVRSIIHGGAISRDGRI FT AIGDCILSINEESTISVTNAQARAMLRRHSLIGPDIKITYVPAEHLEEFKISLGQQSGR FT VMALDIFSSYTGRDIPELPEREEGEGEESELQNTAYSNWNQPRRVELWREPSKSLGISI FT VGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAV FT EAIRKAGNPVVFMVQSIINRPRKSPLPSLLHNLYPKYNFSSTNPFADSLQINADKAPSQ FT SESEPEKAPLCSVPPPPPSAFAEMGSDHTQSSASKISQDVDKEDEFGYSWKNIRERYGT FT LTGELHMIELEKGHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEIN FT GQILYGRSHQNASSIIKCAPSKVKIIFIRNKDAVNQMAVCPGNAVEPLPSNSENLQNKE FT TEPTVTTSDAAVDLSSFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATD FT GRLKVGDQILAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASG FT EKKNSSQSLMVPQSGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTG FT LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVL FT RQTPQRVRLTLYRDEAPYKEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVK FT GGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIKAGPFHSER FT RPSQSSQVSEGSLSSFTFPLSGSSTSESLESSSKKNALASEIQGLRTVEMKKGPTDSLG FT ISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLL FT KNASGSIEMQVVAGGDVSVVTGHQQEPASSSLSFTGLTSSSIFQDDLGPPQCKSITLER FT GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHE FT EAVAILKRTKGTVTLMVLS" FT mRNA complement(join(13106560..13107110,13108935..13109058, FT 13109951..13110063,13110635..13110739,13112023..13112145, FT 13113010..13113053,13113930..13113977,13115288..13115333, FT 13119501..13119648,13121738..13121931,13122086..13122169, FT 13123152..13123297,13125215..13125389,13126515..13126589, FT 13126679..13126771,AL353639.10:5893..5973, FT AL353639.10:8161..8251,AL353639.10:8781..8872, FT AL353639.10:10026..10222,AL353639.10:12056..12218, FT AL353639.10:15535..15633,AL353639.10:19617..19727, FT AL353639.10:22580..22757,AL353639.10:30087..30179, FT AL353639.10:34760..34864,AL353639.10:40435..40633, FT AL353639.10:47821..47944,AL353639.10:48205..48486, FT AL353639.10:55487..55654,AL353639.10:58339..58455, FT AL353639.10:60853..61062,AL353639.10:62183..62368, FT AL353639.10:64200..64364,AL353639.10:65236..65382, FT AL353639.10:68190..68299,AL353639.10:77105..77176, FT AL353639.10:77985..78168,AL353639.10:88843..88931, FT AL353639.10:89249..89363,AL353639.10:91628..91837, FT AL353639.10:93441..93569,AL353639.10:94302..94515, FT AL353639.10:95640..95779,AL353639.10:96443..96652, FT AL162386.17:17882..18048,AL162386.17:20547..20605)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-004" FT /product="multiple PDZ domain protein" FT /note="match: cDNAs: Em:AF093419.1" FT CDS complement(join(13106964..13107110,13108935..13109058, FT 13109951..13110063,13110635..13110739,13112023..13112145, FT 13113010..13113053,13113930..13113977,13115288..13115333, FT 13119501..13119648,13121738..13121931,13122086..13122169, FT 13123152..13123297,13125215..13125389,13126515..13126589, FT 13126679..13126771,AL353639.10:5893..5973, FT AL353639.10:8161..8251,AL353639.10:8781..8872, FT AL353639.10:10026..10222,AL353639.10:12056..12218, FT AL353639.10:15535..15633,AL353639.10:19617..19727, FT AL353639.10:22580..22757,AL353639.10:30087..30179, FT AL353639.10:34760..34864,AL353639.10:40435..40633, FT AL353639.10:47821..47944,AL353639.10:48205..48486, FT AL353639.10:55487..55654,AL353639.10:58339..58455, FT AL353639.10:60853..61062,AL353639.10:62183..62368, FT AL353639.10:64200..64364,AL353639.10:65236..65382, FT AL353639.10:68190..68299,AL353639.10:77105..77176, FT AL353639.10:77985..78168,AL353639.10:88843..88931, FT AL353639.10:89249..89363,AL353639.10:91628..91837, FT AL353639.10:93441..93569,AL353639.10:94302..94515, FT AL353639.10:95640..95779,AL353639.10:96443..96652, FT AL162386.17:17882..18048,AL162386.17:20547..20562)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-004" FT /standard_name="OTTHUMP00000022780" FT /product="multiple PDZ domain protein" FT /protein_id="CAI40492.1" FT /translation="MLEAIDKNRALHAAERLQTKLRERGDVANEDKLSLLKSVLQSPLF FT SQILSLQTSVQQLKDQVNIATSATSNIEYAHVPHLSPAVIPTLQNESFLLSPNNGNLEA FT LTGPGIPHINGKPACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGEL FT GIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIAR FT GSLPQLVSPIVSRSPSAASTISAHSNPVHWQHMETIELVNDGSGLGFGIIGGKATGVIV FT KTILPGGVADQHGRLCSGDHILKIGDTDLAGMSSEQVAQVLRQCGNRVKLMIARGAIEE FT RTAPTALGITLSSSPTSTPELRVDASTQKGEESETFDVELTKNVQGLGITIAGYIGDKK FT LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT FT LMRRGMKQEAELMSREDVTKDADLSPVNASIIKENYEKDEDFLSSTRNTNILPTEEEGY FT PLLSAEIEEIEDAQKQEAALLTKWQRIMGINYEIVVAHVSKFSENSGLGISLEATVGHH FT FIRSVLPEGPVGHSGKLFSGDELLEVNGITLLGENHQDVVNILKELPIEVTMVCCRRTV FT PPTTQSELDSLDLCDIELTEKPHVDLGEFIGSSETEDPVLAMTDAGQSTEEVQAPLAMW FT EAGIQHIELEKGSKGLGFSILDYQDPIDPASTVIIIRSLVPGGIAEKDGRLLPGDRLMF FT VNDVNLENSSLEEAVEALKGAPSGTVRIGVAKPLPLSPEEGYVSAKEDSFLYPPHSCEE FT AGLADKPLFRADLALVGTNDADLVDESTFESPYSPENDSIYSTQASILSLHGSSCGDGL FT NYGSSLPSSPPKDVIENSCDPVLDLHMSLEELYTQNLLQRQDENTPSVDISMGPASGFT FT INDYTPANAIEQQYECENTIVWTESHLPSEVISSAELPSVLPDSAGKGSEYLLEQSSLA FT CNAECVMLQNVSKESFERTINIAKGNSSLGMTVSANKDGLGMIVRSIIHGGAISRDGRI FT AIGDCILSINEESTISVTNAQARAMLRRHSLIGPDIKITYVPAEHLEEFKISLGQQSGR FT VMALDIFSSYTGRDIPELPEREEGEGEESELQNTAYSNWNQPRRVELWREPSKSLGISI FT VGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAV FT EAIRKAGNPVVFMVQSIINRPRKSPLPSLLHNLYPKYNFSSTNPFADSLQINADKAPSQ FT SESEPEKAPLCSVPPPPPSAFAEMGSDHTQSSASKISQDVDKEDEFGYSWKNIRERYGT FT LTGELHMIELEKGHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEIN FT GQILYGRSHQNASSIIKCAPSKVKIIFIRNKDAVNQMAVCPGNAVEPLPSNSENLQNKE FT TEPTVTTSDAAVDLSSFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATD FT GRLKVGDQILAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASG FT EKKNSSQSLMVPQSGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTG FT LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVL FT RQTPQRVRLTLYRDEAPYKEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVK FT GGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIKAGSSTSES FT LESSSKKNALASEIQGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAA FT QTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSVVTGHQQEPA FT SSSLSFTGLTSSSIFQDDLGPPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVF FT AKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS" FT mRNA complement(join(13106497..13107110,13108935..13109058, FT 13109951..13110063,13110635..13110739,13112023..13112145, FT 13113010..13113053,13113930..13114020,13115247..13115333, FT 13119501..13119648,13121738..13121931,13122086..13122169, FT 13123152..13123297,13125215..13125389,13126515..13126589, FT 13126679..13126771,AL353639.10:5893..5973, FT AL353639.10:8161..8251,AL353639.10:8781..8872, FT AL353639.10:10026..10222,AL353639.10:12056..12218, FT AL353639.10:40435..40633,AL353639.10:47821..47961)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-005" FT /product="multiple PDZ domain protein" FT /note="match: cDNAs: Em:AK091945.1" FT misc_feature 13012121 FT /note="Clone_right_end: RP11-187K14" FT polyA_site complement(13021399) FT polyA_signal complement(13021413..13021418) FT CDS complement(13021698..13022891) FT /pseudo FT /locus_tag="RP11-382H24.2-001" FT /product="Sjogren syndrome antigen B (autoantigen La) (SSB) FT pseudogene" FT /note="match: proteins: Sw:P05455 Sw:P10881 Sw:P28048 FT Sw:P28049 Sw:P32067 Sw:P38656 Sw:P87058 Sw:Q04504 Tr:O01806 FT Tr:Q14730 Tr:Q15367" FT misc_feature 13094220 FT /note="Clone_left_end: RP11-664D14" FT polyA_site complement(13105703) FT polyA_signal complement(13105730..13105735) FT polyA_site complement(13106572) FT polyA_signal complement(13106573..13106578) FT mRNA complement(join(13105703..13107110,13108935..13109058, FT 13109951..13110063,13110635..13110739,13112023..13112145, FT 13113010..13113053,13113930..13114020,13115247..13115333, FT 13119501..13120649)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-006" FT /product="multiple PDZ domain protein" FT /note="match: cDNAs: Em:AK058011.1" FT CDS complement(join(13106964..13107110,13108935..13109058, FT 13109951..13110063,13110635..13110739,13112023..13112145, FT 13113010..13113053,13113930..13114020,13115247..13115333, FT 13119501..13119674)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-006" FT /standard_name="OTTHUMP00000022782" FT /product="multiple PDZ domain protein" FT /protein_id="CAI40494.1" FT /translation="MLKFKIVCRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDV FT RNATQEAVAALLKCSLGTVTLEVGRIKAGPFHSERRPSQSSQVSEGSLSSFTFPLSGSS FT TSESLESSSKKNALASEIQGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPT FT GVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSVVTGHQ FT QEPASSSLSFTGLTSSSIFQDDLGPPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYV FT KTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS" FT mRNA complement(join(13119501..13119648,13122086..13122169, FT 13123152..13123297,13125215..13125389,13126515..13126589, FT 13126679..>13126771)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-002" FT /product="multiple PDZ domain protein" FT /note="match: ESTs: Em:AV646567.1 Em:AV646613.1 FT Em:AV646631.1 Em:AV646633.1 Em:AV646666.1 Em:AV646667.1" FT CDS complement(join(13119535..13119648,13122086..13122169, FT 13123152..13123297,13125215..13125389,13126515..13126589, FT 13126679..>13126771)) FT /codon_start=1 FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-002" FT /standard_name="OTTHUMP00000022778" FT /product="multiple PDZ domain protein" FT /protein_id="CAI40495.1" FT /translation="DQGGLGIAISEEDTLSGVIIKSLTEHGVAATDGRLKVGDQILAVD FT DEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASGEKKNSSQSLMVPQ FT SGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTGLGLSIVGGSDTLL FT GAIIIHEVYEEGAACKDGRLWAGDQILEKRYWSICVRHCQRRNCRCRWKTDAGRPDING FT EWGRRS" FT misc_feature 13127930 FT /note="Clone_right_end: RP11-382H24" FT misc_feature 13129931..13231752 FT /note="annotated region of clone" FT mRNA complement(join(AL161449.7:146227..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153750, FT AL161449.7:154977..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:162882..163027, FT AL161449.7:164945..165119,AL161449.7:166245..166319, FT AL161449.7:166409..166501,13133823..13133903, FT 13136091..>13136180)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-003" FT /product="multiple PDZ domain protein" FT /note="match: cDNAs: Em:AK074721.1" FT CDS complement(join(AL161449.7:146694..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153750, FT AL161449.7:154977..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:162882..163027, FT AL161449.7:164945..165119,AL161449.7:166245..166319, FT AL161449.7:166409..166501,13133823..13133903, FT 13136091..>13136180)) FT /codon_start=1 FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-003" FT /standard_name="OTTHUMP00000022779" FT /product="multiple PDZ domain protein" FT /protein_id="CAI41236.1" FT /translation="NKDAVNQMAVCPGNAVEPLPSNSENLQNKETEPTVTTSDAAVDLS FT SFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATDGRLKVGDQILAVDDE FT IVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASGEKKNSSQSLMVPQSG FT SPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTGLGLSIVGGSDTLLVN FT GIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKEEEVCDTLTIELQKKPGKGLGLSI FT VGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTV FT TLEVGRIKAGPFHSERRPSQSSQVSEGSLSSFTFPLSGSSTSESLESSSKKNALASEIQ FT GLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTIC FT GTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSVVTGHQQEPASSSLSFTGLTSSSIF FT QDDLGPPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGD FT QIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS" FT CDS complement(join(AL161449.7:146694..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153750, FT AL161449.7:154977..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:161816..161899, FT AL161449.7:162882..163027,AL161449.7:164945..165119, FT AL161449.7:166245..166319,AL161449.7:166409..166501, FT 13133823..13133903,13136091..13136181,13136711..13136802, FT 13137956..13138152,13139986..13140067)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-005" FT /standard_name="OTTHUMP00000022781" FT /product="multiple PDZ domain protein" FT /protein_id="CAI41237.1" FT /translation="MGSDHTQSSASKISQDVDKEDEFGYSWKNIRERYGTLTGELHMIE FT LEKGHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEINGQILYGRSH FT QNASSIIKCAPSKVKIIFIRNKDAVNQMAVCPGNAVEPLPSNSENLQNKETEPTVTTSD FT AAVDLSSFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATDGRLKVGDQI FT LAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASGEKKNSSQSL FT MVPQSGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTGLGLSIVGGS FT DTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRL FT TLYRDEAPYKEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGR FT LMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIKAGPFHSERRPSQSSQVS FT EGSLSSFTFPLSGSSTSESLESSSKKNALASEIQGLRTVEMKKGPTDSLGISIAGGVGS FT PLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEM FT QVVAGGDVSVVTGHQQEPASSSLSFTGLTSSSIFQDDLGPPQCKSITLERGPDGLGFSI FT VGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT FT KGTVTLMVLS" FT mRNA complement(join(AL161449.7:145433..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153750, FT AL161449.7:154977..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:161816..161899, FT AL161449.7:162882..163027,AL161449.7:164945..165119, FT AL161449.7:166245..166319,AL161449.7:166409..166501, FT 13133823..13133903,13136091..13136181,13136711..13136802, FT 13137956..13138152,13139986..13140148,13143465..13143563, FT 13147547..13147657,13150510..13150687,13158017..13158109, FT 13162690..13162794,13168365..13168563,13175751..13175874, FT 13176135..13176416,13183417..13183584,13186269..13186385, FT 13188783..13188992,13190113..13190298,13192130..13192294, FT 13193166..13193312,13196120..13196229,13205035..13205106, FT 13205915..13206098,13216773..13216861,13217179..13217293, FT 13219558..13219767,13221371..13221499,13222232..13222445, FT 13223570..13223709,13224373..13224582, FT AL162386.17:17882..18048,AL162386.17:20547..20576)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-001" FT /product="multiple PDZ domain protein" FT /note="match: ESTs: Em:AL694097.1 Em:AV696967.1 FT Em:AW160850.1 Em:BE780556.1 Em:BF675982.1 Em:BM718297.1 FT Em:BM919298.1 Em:BQ876382.1" FT /note="match: cDNAs: Em:AF326526.1 Em:AF326527.1 FT Em:AF326528.1 Em:AF326529.1 Em:AF326530.1 Em:AF326539.1 FT Em:AF326543.1 Em:AF326544.1 Em:AJ001319.1 Em:AJ001320.1 FT Em:AJ131869.1 Em:AK098775.1" FT CDS complement(join(AL161449.7:146694..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153750, FT AL161449.7:154977..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:161816..161899, FT AL161449.7:162882..163027,AL161449.7:164945..165119, FT AL161449.7:166245..166319,AL161449.7:166409..166501, FT 13133823..13133903,13136091..13136181,13136711..13136802, FT 13137956..13138152,13139986..13140148,13143465..13143563, FT 13147547..13147657,13150510..13150687,13158017..13158109, FT 13162690..13162794,13168365..13168563,13175751..13175874, FT 13176135..13176416,13183417..13183584,13186269..13186385, FT 13188783..13188992,13190113..13190298,13192130..13192294, FT 13193166..13193312,13196120..13196229,13205035..13205106, FT 13205915..13206098,13216773..13216861,13217179..13217293, FT 13219558..13219767,13221371..13221499,13222232..13222445, FT 13223570..13223709,13224373..13224582, FT AL162386.17:17882..18048,AL162386.17:20547..20562)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-001" FT /standard_name="OTTHUMP00000022777" FT /product="multiple PDZ domain protein" FT /note="match: proteins: Sw:O55164 Sw:O75970 Sw:O75970 FT Sw:Q63ZW7 Sw:Q8NI35 Sw:Q8VBX6 Sw:Q8VBX6 Tr:Q09515" FT /protein_id="CAI41239.1" FT /translation="MLEAIDKNRALHAAERLQTKLRERGDVANEDKLSLLKSVLQSPLF FT SQILSLQTSVQQLKDQVNIATSATSNIEYAHVPHLSPAVIPTLQNESFLLSPNNGNLEA FT LTGPGIPHINGKPACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGEL FT GIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIAR FT GSLPQLVSPIVSRSPSAASTISAHSNPVHWQHMETIELVNDGSGLGFGIIGGKATGVIV FT KTILPGGVADQHGRLCSGDHILKIGDTDLAGMSSEQVAQVLRQCGNRVKLMIARGAIEE FT RTAPTALGITLSSSPTSTPELRVDASTQKGEESETFDVELTKNVQGLGITIAGYIGDKK FT LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT FT LMRRGMKQEAELMSREDVTKDADLSPVNASIIKENYEKDEDFLSSTRNTNILPTEEEGY FT PLLSAEIEEIEDAQKQEAALLTKWQRIMGINYEIVVAHVSKFSENSGLGISLEATVGHH FT FIRSVLPEGPVGHSGKLFSGDELLEVNGITLLGENHQDVVNILKELPIEVTMVCCRRTV FT PPTTQSELDSLDLCDIELTEKPHVDLGEFIGSSETEDPVLAMTDAGQSTEEVQAPLAMW FT EAGIQHIELEKGSKGLGFSILDYQDPIDPASTVIIIRSLVPGGIAEKDGRLLPGDRLMF FT VNDVNLENSSLEEAVEALKGAPSGTVRIGVAKPLPLSPEEGYVSAKEDSFLYPPHSCEE FT AGLADKPLFRADLALVGTNDADLVDESTFESPYSPENDSIYSTQASILSLHGSSCGDGL FT NYGSSLPSSPPKDVIENSCDPVLDLHMSLEELYTQNLLQRQDENTPSVDISMGPASGFT FT INDYTPANAIEQQYECENTIVWTESHLPSEVISSAELPSVLPDSAGKGSEYLLEQSSLA FT CNAECVMLQNVSKESFERTINIAKGNSSLGMTVSANKDGLGMIVRSIIHGGAISRDGRI FT AIGDCILSINEESTISVTNAQARAMLRRHSLIGPDIKITYVPAEHLEEFKISLGQQSGR FT VMALDIFSSYTGRDIPELPEREEGEGEESELQNTAYSNWNQPRRVELWREPSKSLGISI FT VGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAV FT EAIRKAGNPVVFMVQSIINRPRKSPLPSLLHNLYPKYNFSSTNPFADSLQINADKAPSQ FT SESEPEKAPLCSVPPPPPSAFAEMGSDHTQSSASKISQDVDKEDEFGYSWKNIRERYGT FT LTGELHMIELEKGHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEIN FT GQILYGRSHQNASSIIKCAPSKVKIIFIRNKDAVNQMAVCPGNAVEPLPSNSENLQNKE FT TEPTVTTSDAAVDLSSFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATD FT GRLKVGDQILAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASG FT EKKNSSQSLMVPQSGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTG FT LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVL FT RQTPQRVRLTLYRDEAPYKEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVK FT GGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIKAGPFHSER FT RPSQSSQVSEGSLSSFTFPLSGSSTSESLESSSKKNALASEIQGLRTVEMKKGPTDSLG FT ISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLL FT KNASGSIEMQVVAGGDVSVVTGHQQEPASSSLSFTGLTSSSIFQDDLGPPQCKSITLER FT GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHE FT EAVAILKRTKGTVTLMVLS" FT mRNA complement(join(AL161449.7:146290..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153707, FT AL161449.7:155018..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:161816..161899, FT AL161449.7:162882..163027,AL161449.7:164945..165119, FT AL161449.7:166245..166319,AL161449.7:166409..166501, FT 13133823..13133903,13136091..13136181,13136711..13136802, FT 13137956..13138152,13139986..13140148,13143465..13143563, FT 13147547..13147657,13150510..13150687,13158017..13158109, FT 13162690..13162794,13168365..13168563,13175751..13175874, FT 13176135..13176416,13183417..13183584,13186269..13186385, FT 13188783..13188992,13190113..13190298,13192130..13192294, FT 13193166..13193312,13196120..13196229,13205035..13205106, FT 13205915..13206098,13216773..13216861,13217179..13217293, FT 13219558..13219767,13221371..13221499,13222232..13222445, FT 13223570..13223709,13224373..13224582, FT AL162386.17:17882..18048,AL162386.17:20547..20605)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-004" FT /product="multiple PDZ domain protein" FT /note="match: cDNAs: Em:AF093419.1" FT CDS complement(join(AL161449.7:146694..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153707, FT AL161449.7:155018..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:161816..161899, FT AL161449.7:162882..163027,AL161449.7:164945..165119, FT AL161449.7:166245..166319,AL161449.7:166409..166501, FT 13133823..13133903,13136091..13136181,13136711..13136802, FT 13137956..13138152,13139986..13140148,13143465..13143563, FT 13147547..13147657,13150510..13150687,13158017..13158109, FT 13162690..13162794,13168365..13168563,13175751..13175874, FT 13176135..13176416,13183417..13183584,13186269..13186385, FT 13188783..13188992,13190113..13190298,13192130..13192294, FT 13193166..13193312,13196120..13196229,13205035..13205106, FT 13205915..13206098,13216773..13216861,13217179..13217293, FT 13219558..13219767,13221371..13221499,13222232..13222445, FT 13223570..13223709,13224373..13224582, FT AL162386.17:17882..18048,AL162386.17:20547..20562)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-004" FT /standard_name="OTTHUMP00000022780" FT /product="multiple PDZ domain protein" FT /protein_id="CAI41238.1" FT /translation="MLEAIDKNRALHAAERLQTKLRERGDVANEDKLSLLKSVLQSPLF FT SQILSLQTSVQQLKDQVNIATSATSNIEYAHVPHLSPAVIPTLQNESFLLSPNNGNLEA FT LTGPGIPHINGKPACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGEL FT GIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIAR FT GSLPQLVSPIVSRSPSAASTISAHSNPVHWQHMETIELVNDGSGLGFGIIGGKATGVIV FT KTILPGGVADQHGRLCSGDHILKIGDTDLAGMSSEQVAQVLRQCGNRVKLMIARGAIEE FT RTAPTALGITLSSSPTSTPELRVDASTQKGEESETFDVELTKNVQGLGITIAGYIGDKK FT LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT FT LMRRGMKQEAELMSREDVTKDADLSPVNASIIKENYEKDEDFLSSTRNTNILPTEEEGY FT PLLSAEIEEIEDAQKQEAALLTKWQRIMGINYEIVVAHVSKFSENSGLGISLEATVGHH FT FIRSVLPEGPVGHSGKLFSGDELLEVNGITLLGENHQDVVNILKELPIEVTMVCCRRTV FT PPTTQSELDSLDLCDIELTEKPHVDLGEFIGSSETEDPVLAMTDAGQSTEEVQAPLAMW FT EAGIQHIELEKGSKGLGFSILDYQDPIDPASTVIIIRSLVPGGIAEKDGRLLPGDRLMF FT VNDVNLENSSLEEAVEALKGAPSGTVRIGVAKPLPLSPEEGYVSAKEDSFLYPPHSCEE FT AGLADKPLFRADLALVGTNDADLVDESTFESPYSPENDSIYSTQASILSLHGSSCGDGL FT NYGSSLPSSPPKDVIENSCDPVLDLHMSLEELYTQNLLQRQDENTPSVDISMGPASGFT FT INDYTPANAIEQQYECENTIVWTESHLPSEVISSAELPSVLPDSAGKGSEYLLEQSSLA FT CNAECVMLQNVSKESFERTINIAKGNSSLGMTVSANKDGLGMIVRSIIHGGAISRDGRI FT AIGDCILSINEESTISVTNAQARAMLRRHSLIGPDIKITYVPAEHLEEFKISLGQQSGR FT VMALDIFSSYTGRDIPELPEREEGEGEESELQNTAYSNWNQPRRVELWREPSKSLGISI FT VGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAV FT EAIRKAGNPVVFMVQSIINRPRKSPLPSLLHNLYPKYNFSSTNPFADSLQINADKAPSQ FT SESEPEKAPLCSVPPPPPSAFAEMGSDHTQSSASKISQDVDKEDEFGYSWKNIRERYGT FT LTGELHMIELEKGHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEIN FT GQILYGRSHQNASSIIKCAPSKVKIIFIRNKDAVNQMAVCPGNAVEPLPSNSENLQNKE FT TEPTVTTSDAAVDLSSFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATD FT GRLKVGDQILAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASG FT EKKNSSQSLMVPQSGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTG FT LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVL FT RQTPQRVRLTLYRDEAPYKEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVK FT GGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIKAGSSTSES FT LESSSKKNALASEIQGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAA FT QTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSVVTGHQQEPA FT SSSLSFTGLTSSSIFQDDLGPPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVF FT AKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS" FT mRNA complement(join(<13133830..13133903,13136091..13136181, FT 13136711..13136802,13137956..13138152,13139986..13140148, FT 13150510..13150687,13158017..13158109,13162690..13162794, FT 13165366..>13165431)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-007" FT /product="multiple PDZ domain protein" FT /note="match: ESTs: Em:BE263698.1 Em:BM905224.1" FT CDS complement(join(<13133830..13133903,13136091..13136181, FT 13136711..13136802,13137956..13138152,13139986..13140148, FT 13150510..13150687,13158017..13158109,13162690..13162794, FT 13165366..>13165431)) FT /codon_start=2 FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-007" FT /standard_name="OTTHUMP00000022783" FT /product="multiple PDZ domain protein" FT /protein_id="CAI41240.1" FT /translation="AAYASHSRFSAAPADDRAPFYVITYVPAEHLEEFKISLGQQSGRV FT MALDIFSSYTGRDIPELPEREEGEGEESELQNTAYSNWNQPRRVELWREPSKSLGISIV FT GGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEAPSQSESEPEKAPLCS FT VPPPPPSAFAEMGSDHTQSSASKISQDVDKEDEFGYSWKNIRERYGTLTGELHMIELEK FT GHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEINGQILYGRSHQNA FT SSIIKCAPSKVKIIFIRNKDAVNQMAVCPGNAVEPLPSNSENLQNKETEPTVTTSDAAV FT DLSSFKNVQHLEL" FT mRNA complement(join(AL161449.7:146227..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153750, FT AL161449.7:154977..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:161816..161899, FT AL161449.7:162882..163027,AL161449.7:164945..165119, FT AL161449.7:166245..166319,AL161449.7:166409..166501, FT 13133823..13133903,13136091..13136181,13136711..13136802, FT 13137956..13138152,13139986..13140148,13168365..13168563, FT 13175751..13175891)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-005" FT /product="multiple PDZ domain protein" FT /note="match: cDNAs: Em:AK091945.1" FT mRNA complement(join(13205919..13206098,13216773..13216861, FT 13217179..13217293,13219655..13219697)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-008" FT /product="multiple PDZ domain protein" FT /note="match: ESTs: Em:AA983518.1" FT misc_feature 13227753 FT /note="Clone_left_end: RP11-272P10" FT misc_feature 13231753..13332638 FT /note="annotated region of clone" FT mRNA complement(join(AL161449.7:145433..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153750, FT AL161449.7:154977..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:161816..161899, FT AL161449.7:162882..163027,AL161449.7:164945..165119, FT AL161449.7:166245..166319,AL161449.7:166409..166501, FT AL353639.10:5893..5973,AL353639.10:8161..8251, FT AL353639.10:8781..8872,AL353639.10:10026..10222, FT AL353639.10:12056..12218,AL353639.10:15535..15633, FT AL353639.10:19617..19727,AL353639.10:22580..22757, FT AL353639.10:30087..30179,AL353639.10:34760..34864, FT AL353639.10:40435..40633,AL353639.10:47821..47944, FT AL353639.10:48205..48486,AL353639.10:55487..55654, FT AL353639.10:58339..58455,AL353639.10:60853..61062, FT AL353639.10:62183..62368,AL353639.10:64200..64364, FT AL353639.10:65236..65382,AL353639.10:68190..68299, FT AL353639.10:77105..77176,AL353639.10:77985..78168, FT AL353639.10:88843..88931,AL353639.10:89249..89363, FT AL353639.10:91628..91837,AL353639.10:93441..93569, FT AL353639.10:94302..94515,AL353639.10:95640..95779, FT AL353639.10:96443..96652,13247634..13247800, FT 13250299..13250328)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-001" FT /product="multiple PDZ domain protein" FT /note="match: cDNAs: Em:AF326526.1 Em:AF326527.1 FT Em:AF326528.1 Em:AF326529.1 Em:AF326530.1 Em:AF326539.1 FT Em:AF326543.1 Em:AF326544.1 Em:AJ001319.1 Em:AJ001320.1 FT Em:AJ131869.1 Em:AK098775.1" FT /note="match: ESTs: Em:AL694097.1 Em:AV696967.1 FT Em:AW160850.1 Em:BE780556.1 Em:BF675982.1 Em:BM718297.1 FT Em:BM919298.1 Em:BQ876382.1" FT CDS complement(join(AL161449.7:146694..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153750, FT AL161449.7:154977..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:161816..161899, FT AL161449.7:162882..163027,AL161449.7:164945..165119, FT AL161449.7:166245..166319,AL161449.7:166409..166501, FT AL353639.10:5893..5973,AL353639.10:8161..8251, FT AL353639.10:8781..8872,AL353639.10:10026..10222, FT AL353639.10:12056..12218,AL353639.10:15535..15633, FT AL353639.10:19617..19727,AL353639.10:22580..22757, FT AL353639.10:30087..30179,AL353639.10:34760..34864, FT AL353639.10:40435..40633,AL353639.10:47821..47944, FT AL353639.10:48205..48486,AL353639.10:55487..55654, FT AL353639.10:58339..58455,AL353639.10:60853..61062, FT AL353639.10:62183..62368,AL353639.10:64200..64364, FT AL353639.10:65236..65382,AL353639.10:68190..68299, FT AL353639.10:77105..77176,AL353639.10:77985..78168, FT AL353639.10:88843..88931,AL353639.10:89249..89363, FT AL353639.10:91628..91837,AL353639.10:93441..93569, FT AL353639.10:94302..94515,AL353639.10:95640..95779, FT AL353639.10:96443..96652,13247634..13247800, FT 13250299..13250314)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-001" FT /standard_name="OTTHUMP00000022777" FT /product="multiple PDZ domain protein" FT /note="match: proteins: Sw:O55164 Sw:O75970 Sw:O75970 FT Sw:Q63ZW7 Sw:Q8NI35 Sw:Q8VBX6 Sw:Q8VBX6 Tr:Q09515" FT /protein_id="CAH71899.1" FT /translation="MLEAIDKNRALHAAERLQTKLRERGDVANEDKLSLLKSVLQSPLF FT SQILSLQTSVQQLKDQVNIATSATSNIEYAHVPHLSPAVIPTLQNESFLLSPNNGNLEA FT LTGPGIPHINGKPACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGEL FT GIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIAR FT GSLPQLVSPIVSRSPSAASTISAHSNPVHWQHMETIELVNDGSGLGFGIIGGKATGVIV FT KTILPGGVADQHGRLCSGDHILKIGDTDLAGMSSEQVAQVLRQCGNRVKLMIARGAIEE FT RTAPTALGITLSSSPTSTPELRVDASTQKGEESETFDVELTKNVQGLGITIAGYIGDKK FT LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT FT LMRRGMKQEAELMSREDVTKDADLSPVNASIIKENYEKDEDFLSSTRNTNILPTEEEGY FT PLLSAEIEEIEDAQKQEAALLTKWQRIMGINYEIVVAHVSKFSENSGLGISLEATVGHH FT FIRSVLPEGPVGHSGKLFSGDELLEVNGITLLGENHQDVVNILKELPIEVTMVCCRRTV FT PPTTQSELDSLDLCDIELTEKPHVDLGEFIGSSETEDPVLAMTDAGQSTEEVQAPLAMW FT EAGIQHIELEKGSKGLGFSILDYQDPIDPASTVIIIRSLVPGGIAEKDGRLLPGDRLMF FT VNDVNLENSSLEEAVEALKGAPSGTVRIGVAKPLPLSPEEGYVSAKEDSFLYPPHSCEE FT AGLADKPLFRADLALVGTNDADLVDESTFESPYSPENDSIYSTQASILSLHGSSCGDGL FT NYGSSLPSSPPKDVIENSCDPVLDLHMSLEELYTQNLLQRQDENTPSVDISMGPASGFT FT INDYTPANAIEQQYECENTIVWTESHLPSEVISSAELPSVLPDSAGKGSEYLLEQSSLA FT CNAECVMLQNVSKESFERTINIAKGNSSLGMTVSANKDGLGMIVRSIIHGGAISRDGRI FT AIGDCILSINEESTISVTNAQARAMLRRHSLIGPDIKITYVPAEHLEEFKISLGQQSGR FT VMALDIFSSYTGRDIPELPEREEGEGEESELQNTAYSNWNQPRRVELWREPSKSLGISI FT VGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAV FT EAIRKAGNPVVFMVQSIINRPRKSPLPSLLHNLYPKYNFSSTNPFADSLQINADKAPSQ FT SESEPEKAPLCSVPPPPPSAFAEMGSDHTQSSASKISQDVDKEDEFGYSWKNIRERYGT FT LTGELHMIELEKGHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEIN FT GQILYGRSHQNASSIIKCAPSKVKIIFIRNKDAVNQMAVCPGNAVEPLPSNSENLQNKE FT TEPTVTTSDAAVDLSSFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATD FT GRLKVGDQILAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASG FT EKKNSSQSLMVPQSGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTG FT LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVL FT RQTPQRVRLTLYRDEAPYKEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVK FT GGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIKAGPFHSER FT RPSQSSQVSEGSLSSFTFPLSGSSTSESLESSSKKNALASEIQGLRTVEMKKGPTDSLG FT ISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLL FT KNASGSIEMQVVAGGDVSVVTGHQQEPASSSLSFTGLTSSSIFQDDLGPPQCKSITLER FT GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHE FT EAVAILKRTKGTVTLMVLS" FT mRNA complement(join(AL161449.7:146290..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153707, FT AL161449.7:155018..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:161816..161899, FT AL161449.7:162882..163027,AL161449.7:164945..165119, FT AL161449.7:166245..166319,AL161449.7:166409..166501, FT AL353639.10:5893..5973,AL353639.10:8161..8251, FT AL353639.10:8781..8872,AL353639.10:10026..10222, FT AL353639.10:12056..12218,AL353639.10:15535..15633, FT AL353639.10:19617..19727,AL353639.10:22580..22757, FT AL353639.10:30087..30179,AL353639.10:34760..34864, FT AL353639.10:40435..40633,AL353639.10:47821..47944, FT AL353639.10:48205..48486,AL353639.10:55487..55654, FT AL353639.10:58339..58455,AL353639.10:60853..61062, FT AL353639.10:62183..62368,AL353639.10:64200..64364, FT AL353639.10:65236..65382,AL353639.10:68190..68299, FT AL353639.10:77105..77176,AL353639.10:77985..78168, FT AL353639.10:88843..88931,AL353639.10:89249..89363, FT AL353639.10:91628..91837,AL353639.10:93441..93569, FT AL353639.10:94302..94515,AL353639.10:95640..95779, FT AL353639.10:96443..96652,13247634..13247800, FT 13250299..13250357)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-004" FT /product="multiple PDZ domain protein" FT /note="match: cDNAs: Em:AF093419.1" FT CDS complement(join(AL161449.7:146694..146840, FT AL161449.7:148665..148788,AL161449.7:149681..149793, FT AL161449.7:150365..150469,AL161449.7:151753..151875, FT AL161449.7:152740..152783,AL161449.7:153660..153707, FT AL161449.7:155018..155063,AL161449.7:159231..159378, FT AL161449.7:161468..161661,AL161449.7:161816..161899, FT AL161449.7:162882..163027,AL161449.7:164945..165119, FT AL161449.7:166245..166319,AL161449.7:166409..166501, FT AL353639.10:5893..5973,AL353639.10:8161..8251, FT AL353639.10:8781..8872,AL353639.10:10026..10222, FT AL353639.10:12056..12218,AL353639.10:15535..15633, FT AL353639.10:19617..19727,AL353639.10:22580..22757, FT AL353639.10:30087..30179,AL353639.10:34760..34864, FT AL353639.10:40435..40633,AL353639.10:47821..47944, FT AL353639.10:48205..48486,AL353639.10:55487..55654, FT AL353639.10:58339..58455,AL353639.10:60853..61062, FT AL353639.10:62183..62368,AL353639.10:64200..64364, FT AL353639.10:65236..65382,AL353639.10:68190..68299, FT AL353639.10:77105..77176,AL353639.10:77985..78168, FT AL353639.10:88843..88931,AL353639.10:89249..89363, FT AL353639.10:91628..91837,AL353639.10:93441..93569, FT AL353639.10:94302..94515,AL353639.10:95640..95779, FT AL353639.10:96443..96652,13247634..13247800, FT 13250299..13250314)) FT /gene="MPDZ" FT /locus_tag="RP11-382H24.1-004" FT /standard_name="OTTHUMP00000022780" FT /product="multiple PDZ domain protein" FT /protein_id="CAH71900.1" FT /translation="MLEAIDKNRALHAAERLQTKLRERGDVANEDKLSLLKSVLQSPLF FT SQILSLQTSVQQLKDQVNIATSATSNIEYAHVPHLSPAVIPTLQNESFLLSPNNGNLEA FT LTGPGIPHINGKPACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGEL FT GIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIAR FT GSLPQLVSPIVSRSPSAASTISAHSNPVHWQHMETIELVNDGSGLGFGIIGGKATGVIV FT KTILPGGVADQHGRLCSGDHILKIGDTDLAGMSSEQVAQVLRQCGNRVKLMIARGAIEE FT RTAPTALGITLSSSPTSTPELRVDASTQKGEESETFDVELTKNVQGLGITIAGYIGDKK FT LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT FT LMRRGMKQEAELMSREDVTKDADLSPVNASIIKENYEKDEDFLSSTRNTNILPTEEEGY FT PLLSAEIEEIEDAQKQEAALLTKWQRIMGINYEIVVAHVSKFSENSGLGISLEATVGHH FT FIRSVLPEGPVGHSGKLFSGDELLEVNGITLLGENHQDVVNILKELPIEVTMVCCRRTV FT PPTTQSELDSLDLCDIELTEKPHVDLGEFIGSSETEDPVLAMTDAGQSTEEVQAPLAMW FT EAGIQHIELEKGSKGLGFSILDYQDPIDPASTVIIIRSLVPGGIAEKDGRLLPGDRLMF FT VNDVNLENSSLEEAVEALKGAPSGTVRIGVAKPLPLSPEEGYVSAKEDSFLYPPHSCEE FT AGLADKPLFRADLALVGTNDADLVDESTFESPYSPENDSIYSTQASILSLHGSSCGDGL FT NYGSSLPSSPPKDVIENSCDPVLDLHMSLEELYTQNLLQRQDENTPSVDISMGPASGFT FT INDYTPANAIEQQYECENTIVWTESHLPSEVISSAELPSVLPDSAGKGSEYLLEQSSLA FT CNAECVMLQNVSKESFERTINIAKGNSSLGMTVSANKDGLGMIVRSIIHGGAISRDGRI FT AIGDCILSINEESTISVTNAQARAMLRRHSLIGPDIKITYVPAEHLEEFKISLGQQSGR FT VMALDIFSSYTGRDIPELPEREEGEGEESELQNTAYSNWNQPRRVELWREPSKSLGISI FT VGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAV FT EAIRKAGNPVVFMVQSIINRPRKSPLPSLLHNLYPKYNFSSTNPFADSLQINADKAPSQ FT SESEPEKAPLCSVPPPPPSAFAEMGSDHTQSSASKISQDVDKEDEFGYSWKNIRERYGT FT LTGELHMIELEKGHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEIN FT GQILYGRSHQNASSIIKCAPSKVKIIFIRNKDAVNQMAVCPGNAVEPLPSNSENLQNKE FT TEPTVTTSDAAVDLSSFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATD FT GRLKVGDQILAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASG FT EKKNSSQSLMVPQSGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTG FT LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVL FT RQTPQRVRLTLYRDEAPYKEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVK FT GGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIKAGSSTSES FT LESSSKKNALASEIQGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAA FT QTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSVVTGHQQEPA FT SSSLSFTGLTSSSIFQDDLGPPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVF FT AKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS" FT misc_feature 13277245..13277267 FT /note="Single clone region. Sequence from reads from a FT short insert library derived from a single pUC clone. FT Restriction digest data confirm the assembly" FT mRNA complement(join(13274509..13274609,13276573..13276770, FT 13279029..13279186)) FT /locus_tag="RP11-272P10.2-001" FT /product="novel transcript" FT /note="match: ESTs: Em:AA812601.1 Em:AI743527.1" FT misc_feature 13288117 FT /note="Clone_right_end: RP11-664D14" FT polyA_site complement(13322558) FT polyA_signal complement(13322560..13322565) FT CDS complement(13322805..13323654) FT /pseudo FT /locus_tag="RP11-272P10.3-001" FT /product="inhibitor of growth family, member 1 (ING1) FT pseudogene" FT /note="match: proteins: Sw:Q9QXV3 Sw:Q9UK53 Sw:Q9UK53 FT Sw:Q9UK53 Sw:Q9UK53" FT misc_feature 13332639..13507436 FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT repeat_region 13333652..13333709 FT /rpt_family="ALU" FT /note="89% identity: matches 357..414 of consensus" FT exon 13334429..13334475 FT /note="XPOUND prediction, score = 0.251" FT repeat_region complement(13334795..13335065) FT /rpt_family="ALU" FT /note="88% identity: matches 314..583 of consensus" FT repeat_region 13334795..13335065 FT /rpt_family="L1" FT /note="86% identity: matches 245..515 of consensus" FT exon complement(13335191..13335257) FT /note="MZEF prediction, score = 0.970" FT repeat_region 13335379..13335499 FT /rpt_family="ttttttatttt repeat" FT /rpt_type=TANDEM FT /note="homology = 62.8%, counts = 11" FT exon complement(13335954..13336301) FT /note="GENSCAN prediction, score = 17.69" FT /note="GRAIL, score = 63%, comment = good" FT exon 13335968..13335981 FT /note="XPOUND prediction, score = 0.473" FT repeat_region 13335969..13336024 FT /rpt_family="MER37" FT /note="91% identity: matches 64..119 of consensus" FT repeat_region complement(13336260..13336385) FT /rpt_family="MER37" FT /note="82% identity: matches 78..202 of consensus" FT repeat_region 13336701..13336834 FT /rpt_family="MER37" FT /note="82% identity: matches 39..170 of consensus" FT repeat_region 13337042..13337134 FT /rpt_family="MER37" FT /note="83% identity: matches 150..242 of consensus" FT exon complement(13337043..13337147) FT /note="GRAIL, score = 50%, comment = good" FT repeat_region complement(13337559..13337841) FT /rpt_family="ALU" FT /note="90% identity: matches 228..509 of consensus" FT repeat_region 13337614..13337826 FT /rpt_family="L1" FT /note="86% identity: matches 215..424 of consensus" FT repeat_region 13337876..13337889 FT /note="CT repeat" FT repeat_region 13337918..13338081 FT /rpt_family="L1" FT /note="81% identity: matches 169..331 of consensus" FT repeat_region complement(13337918..13338121) FT /rpt_family="ALU" FT /note="82% identity: matches 70..273 of consensus" FT repeat_region complement(13338100..13338182) FT /rpt_family="ALU" FT /note="88% identity: matches 427..511 of consensus" FT exon complement(13338100..13338185) FT /note="MZEF prediction, score = 0.673" FT repeat_region 13338271..13338318 FT /rpt_family="MER37" FT /note="95% identity: matches 157..204 of consensus" FT repeat_region 13338507..13338584 FT /rpt_family="MER37" FT /note="89% identity: matches 108..185 of consensus" FT repeat_region complement(13339122..13339246) FT /rpt_family="THE" FT /note="88% identity: matches 251..374 of consensus" FT repeat_region complement(13339237..13339294) FT /rpt_family="THE" FT /note="89% identity: matches 201..258 of consensus" FT repeat_region complement(13339308..13339402) FT /rpt_family="THE" FT /note="88% identity: matches 1..93 of consensus" FT repeat_region complement(13339438..13339488) FT /rpt_family="THE" FT /note="90% identity: matches 7..57 of consensus" FT exon 13339448..13339463 FT /note="XPOUND prediction, score = 0.336" FT exon 13339482..13339494 FT /note="XPOUND prediction, score = 0.234" FT repeat_region 13339825..13339908 FT /rpt_family="tttttta repeat" FT /rpt_type=TANDEM FT /note="homology = 66.7%, counts = 12" FT repeat_region 13340116..13340132 FT /note="TTTG repeat" FT repeat_region complement(13340156..13340282) FT /rpt_family="L1" FT /note="98% identity: matches 78..204 of consensus" FT repeat_region complement(13340321..13342492) FT /rpt_family="L1" FT /note="95% identity: matches 3681..5856 of consensus" FT exon complement(13341116..13341466) FT /note="GRAIL, score = 44%, comment = marginal" FT exon complement(13341524..13342402) FT /note="GENSCAN prediction, score = 21.84" FT exon complement(13341524..13342477) FT /note="GRAIL, score = 86%, comment = excellent" FT exon complement(13341725..13341876) FT /note="MZEF prediction, score = 0.677" FT repeat_region complement(13342493..13343527) FT /rpt_family="L1" FT /note="93% identity: matches 2627..3662 of consensus" FT exon complement(13342897..13343370) FT /note="GRAIL, score = 46%, comment = marginal" FT repeat_region 13343530..13344168 FT /rpt_family="L1" FT /note="89% identity: matches 525..1160 of consensus" FT exon 13343600..13343625 FT /note="XPOUND prediction, score = 0.223" FT exon 13343633..13343694 FT /note="XPOUND prediction, score = 0.715" FT exon complement(13343858..13343877) FT /note="XPOUND prediction, score = 0.218" FT exon complement(13344113..13344132) FT /note="XPOUND prediction, score = 0.625" FT exon 13344154..13344365 FT /note="GRAIL, score = 60%, comment = good shadow" FT repeat_region 13344228..13345506 FT /rpt_family="L1" FT /note="93% identity: matches 1343..2630 of consensus" FT exon complement(13344272..13344283) FT /note="XPOUND prediction, score = 0.330" FT repeat_region 13345451..13345464 FT /note="CACCA repeat" FT repeat_region 13346426..13346437 FT /note="TAT repeat" FT exon 13347115..13347236 FT /note="MZEF prediction, score = 0.861" FT repeat_region 13347787..13347815 FT /rpt_type=INVERTED FT /note="IR1, 89% complementary to IR1' (15832..15859)" FT repeat_region 13348064..13348180 FT /rpt_family="ALU" FT /note="82% identity: matches 3..119 of consensus" FT repeat_region 13348222..13348318 FT /rpt_family="ALU" FT /note="86% identity: matches 945..1042 of consensus" FT repeat_region 13348361..13348450 FT /rpt_family="aga repeat" FT /rpt_type=TANDEM FT /note="homology = 74.4%, counts = 30" FT repeat_region 13348399..13348414 FT /note="AGG repeat" FT repeat_region 13348436..13348450 FT /note="GGA repeat" FT repeat_region 13348470..13348497 FT /rpt_type=INVERTED FT /note="IR1', 89% complementary to IR1 (15149..15177)" FT exon complement(13348950..13348956) FT /note="XPOUND prediction, score = 0.203" FT repeat_region 13349961..13349978 FT /note="TTTA repeat" FT repeat_region 13350005..13350255 FT /rpt_family="L1" FT /note="85% identity: matches 178..424 of consensus" FT repeat_region complement(13350014..13350267) FT /rpt_family="ALU" FT /note="88% identity: matches 150..401 of consensus" FT exon 13350300..13350385 FT /note="XPOUND prediction, score = 0.519" FT repeat_region 13350733..13351008 FT /rpt_family="L1" FT /note="87% identity: matches 245..521 of consensus" FT repeat_region complement(13350733..13351012) FT /rpt_family="ALU" FT /note="90% identity: matches 2..280 of consensus" FT exon 13351469..13351540 FT /note="GRAIL, score = 71%, comment = good" FT exon 13351620..13351680 FT /note="MZEF prediction, score = 0.836" FT exon 13351744..13351840 FT /note="GRAIL, score = 63%, comment = good" FT exon 13352913..13352953 FT /note="MZEF prediction, score = 0.606" FT exon complement(13353388..13353505) FT /note="GRAIL, score = 70%, comment = good" FT repeat_region 13354500..13354519 FT /note="TTTTG repeat" FT repeat_region complement(13354533..13354732) FT /rpt_family="ALU" FT /note="88% identity: matches 360..560 of consensus" FT repeat_region 13354674..13354733 FT /rpt_family="L1" FT /note="95% identity: matches 472..531 of consensus" FT exon 13355148..13355164 FT /note="XPOUND prediction, score = 0.467" FT repeat_region complement(13356660..13356924) FT /rpt_family="ALU" FT /note="89% identity: matches 4..269 of consensus" FT repeat_region 13356692..13356913 FT /rpt_family="L1" FT /note="85% identity: matches 207..424 of consensus" FT repeat_region 13359156..13359463 FT /rpt_type=INVERTED FT /note="IR2, 85% complementary to IR2' (26919..27218)" FT repeat_region 13359166..13359180 FT /note="TTTA repeat" FT repeat_region 13359183..13359449 FT /rpt_family="L1" FT /note="84% identity: matches 161..424 of consensus" FT repeat_region complement(13359201..13359461) FT /rpt_family="ALU" FT /note="88% identity: matches 868..1127 of consensus" FT exon 13359454..13359530 FT /note="GENSCAN prediction, score = 2.24" FT repeat_region 13359557..13359705 FT /rpt_family="ALU" FT /note="88% identity: matches 446..595 of consensus" FT repeat_region 13359557..13359856 FT /rpt_type=INVERTED FT /note="IR2', 85% complementary to IR2 (26518..26825)" FT repeat_region complement(13359571..13359697) FT /rpt_family="L1" FT /note="87% identity: matches 299..424 of consensus" FT exon 13359618..13359654 FT /note="XPOUND prediction, score = 0.391" FT repeat_region 13359713..13359808 FT /rpt_family="ALU" FT /note="92% identity: matches 461..553 of consensus" FT repeat_region complement(13359713..13359825) FT /rpt_family="L1" FT /note="84% identity: matches 166..276 of consensus" FT exon 13359860..13359930 FT /note="XPOUND prediction, score = 0.365" FT repeat_region 13360254..13360352 FT /rpt_family="THE" FT /note="84% identity: matches 43..139 of consensus" FT exon complement(13361420..13361551) FT /note="GRAIL, score = 55%, comment = good" FT repeat_region 13362461..13362769 FT /rpt_type=INVERTED FT /note="IR3, 77% complementary to IR3' (30722..31026)" FT repeat_region 13362471..13362485 FT /note="TTTA repeat" FT repeat_region 13362483..13362613 FT /rpt_family="L1" FT /note="83% identity: matches 157..287 of consensus" FT repeat_region complement(13362495..13362625) FT /rpt_family="ALU" FT /note="88% identity: matches 289..418 of consensus" FT repeat_region complement(13362652..13362702) FT /rpt_family="ALU" FT /note="94% identity: matches 688..738 of consensus" FT exon complement(13363086..13363219) FT /note="GRAIL, score = 96%, comment = excellent" FT exon 13363144..13363157 FT /note="XPOUND prediction, score = 0.221" FT exon 13363293..13363330 FT /note="XPOUND prediction, score = 0.244" FT repeat_region 13363360..13363642 FT /rpt_family="ALU" FT /note="89% identity: matches 303..585 of consensus" FT repeat_region 13363360..13363664 FT /rpt_type=INVERTED FT /note="IR3', 77% complementary to IR3 (29823..30131)" FT repeat_region complement(13363362..13363642) FT /rpt_family="L1" FT /note="89% identity: matches 243..524 of consensus" FT repeat_region 13363639..13363690 FT /rpt_family="taaa repeat" FT /rpt_type=TANDEM FT /note="homology = 75.0%, counts = 13" FT repeat_region 13363666..13363682 FT /note="AAAAC repeat" FT repeat_region 13364159..13364170 FT /note="TG repeat" FT exon 13364410..13364462 FT /note="XPOUND prediction, score = 0.584" FT repeat_region 13365534..13365545 FT /note="TTG repeat" FT exon 13367920..13367938 FT /note="XPOUND prediction, score = 0.211" FT exon 13368122..13368138 FT /note="XPOUND prediction, score = 0.208" FT repeat_region 13368336..13368363 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 14" FT repeat_region 13368336..13368363 FT /note="AT repeat" FT repeat_region 13368364..13368380 FT /note="TTG repeat" FT repeat_region complement(13368386..13368487) FT /rpt_family="ALU" FT /note="90% identity: matches 973..1073 of consensus" FT repeat_region 13368411..13368478 FT /rpt_family="L1" FT /note="89% identity: matches 187..254 of consensus" FT repeat_region complement(13368487..13368688) FT /rpt_family="ALU" FT /note="84% identity: matches 314..513 of consensus" FT repeat_region 13368488..13368691 FT /rpt_family="L1" FT /note="81% identity: matches 383..588 of consensus" FT exon 13369021..13369042 FT /note="XPOUND prediction, score = 0.240" FT repeat_region 13370289..13370301 FT /note="AT repeat" FT exon complement(13370801..13370900) FT /note="GRAIL, score = 99%, comment = excellent" FT /note="MZEF prediction, score = 0.994" FT repeat_region complement(13370982..13371147) FT /rpt_family="L1" FT /note="86% identity: matches 558..723 of consensus" FT repeat_region complement(13371375..13371451) FT /rpt_family="L1" FT /note="86% identity: matches 5574..5652 of consensus" FT exon 13371448..13371580 FT /note="GENSCAN prediction, score = 0.23" FT exon 13371524..13371580 FT /note="GRAIL, score = 42%, comment = marginal shadow" FT repeat_region 13372060..13372149 FT /rpt_family="aaaaaaaaaagaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 73.3%, counts = 6" FT repeat_region 13372076..13372089 FT /note="AAAAG repeat" FT repeat_region 13373140..13373150 FT /note="AC repeat" FT repeat_region 13373154..13373215 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 69.4%, counts = 31" FT repeat_region 13373171..13373182 FT /note="AT repeat" FT exon 13373837..13373928 FT /note="GENSCAN prediction, score = 4.87" FT /note="GRAIL, score = 75%, comment = excellent shadow" FT exon 13373915..13373928 FT /note="XPOUND prediction, score = 0.278" FT exon complement(13374131..13374219) FT /note="GRAIL, score = 65%, comment = good" FT exon 13374145..13374158 FT /note="XPOUND prediction, score = 0.232" FT exon 13375175..13375251 FT /note="MZEF prediction, score = 0.939" FT exon 13375232..13375251 FT /note="XPOUND prediction, score = 0.326" FT exon 13375294..13375304 FT /note="XPOUND prediction, score = 0.369" FT exon 13375518..13375653 FT /note="MZEF prediction, score = 0.667" FT exon 13375956..13375985 FT /note="XPOUND prediction, score = 0.223" FT exon 13376610..13376628 FT /note="XPOUND prediction, score = 0.392" FT exon 13376637..13376670 FT /note="XPOUND prediction, score = 0.208" FT exon complement(13377244..13377348) FT /note="GRAIL, score = 74%, comment = good" FT exon complement(13377503..13377679) FT /note="GRAIL, score = 56%, comment = good" FT repeat_region 13377880..13377909 FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 15" FT repeat_region 13377887..13377910 FT /note="TG repeat" FT repeat_region 13378033..13378043 FT /note="AT repeat" FT exon 13378317..13378360 FT /note="XPOUND prediction, score = 0.236" FT repeat_region complement(13378830..13378947) FT /rpt_family="L1" FT /note="85% identity: matches 481..598 of consensus" FT repeat_region 13378833..13379140 FT /rpt_type=INVERTED FT /note="IR4, 80% complementary to IR4' (47237..47524)" FT repeat_region 13378843..13378947 FT /rpt_family="ALU" FT /note="91% identity: matches 468..572 of consensus" FT repeat_region 13378961..13378982 FT /note="AT repeat" FT repeat_region complement(13379006..13379110) FT /rpt_family="L1" FT /note="84% identity: matches 182..285 of consensus" FT repeat_region 13379006..13379111 FT /rpt_family="L1" FT /note="90% identity: matches 296..400 of consensus" FT repeat_region 13379094..13379131 FT /rpt_family="ALU" FT /note="94% identity: matches 552..589 of consensus" FT STS 13379156..13379347 FT /standard_name="SHGC-3971 (D7S467), Map: 9, Homo sapiens" FT /note="GenBank Accession Number: G17299" FT repeat_region complement(13379371..13379419) FT /rpt_family="MER5" FT /note="91% identity: matches 23..71 of consensus" FT repeat_region 13379869..13379883 FT /note="ATTTT repeat" FT repeat_region 13379870..13380149 FT /rpt_family="L1" FT /note="83% identity: matches 147..424 of consensus" FT repeat_region 13379875..13380162 FT /rpt_type=INVERTED FT /note="IR4', 80% complementary to IR4 (46195..46502)" FT repeat_region complement(13379890..13380152) FT /rpt_family="L1" FT /note="84% identity: matches 83..347 of consensus" FT repeat_region 13380843..13380881 FT /rpt_family="THE" FT /note="94% identity: matches 490..528 of consensus" FT exon 13381339..13381414 FT /note="GRAIL, score = 60%, comment = good shadow" FT exon 13381897..13382018 FT /note="GENSCAN prediction, score = 1.56" FT repeat_region 13383625..13383636 FT /note="TTA repeat" FT repeat_region 13383993..13384367 FT /rpt_family="THE" FT /note="84% identity: matches 1..371 of consensus" FT exon 13384355..13384385 FT /note="XPOUND prediction, score = 0.214" FT repeat_region 13384369..13384626 FT /rpt_family="THR" FT /note="87% identity: matches 3..260 of consensus" FT repeat_region 13384522..13385899 FT /rpt_family="THR" FT /note="82% identity: matches 103..1483 of consensus" FT exon complement(13385239..13385519) FT /note="GENSCAN prediction, score = 4.02" FT /note="GRAIL, score = 55%, comment = good" FT exon complement(13385573..13385616) FT /note="GRAIL, score = 80%, comment = excellent" FT repeat_region 13385937..13386310 FT /rpt_family="THE" FT /note="85% identity: matches 1..371 of consensus" FT exon complement(13386147..13386189) FT /note="XPOUND prediction, score = 0.273" FT repeat_region 13386572..13386853 FT /rpt_family="L1" FT /note="81% identity: matches 312..596 of consensus" FT repeat_region complement(13386578..13386841) FT /rpt_family="ALU" FT /note="83% identity: matches 308..571 of consensus" FT repeat_region 13387428..13387439 FT /note="TTG repeat" FT STS 13387995..13388266 FT /standard_name="SHGC-100457 (D11S4975), Map: 9, Homo FT sapiens" FT /note="GenBank Accession Number: G55209" FT exon complement(13388912..13388957) FT /note="MZEF prediction, score = 0.601" FT exon complement(13389495..13389577) FT /note="GENSCAN prediction, score = 3.96" FT repeat_region 13389815..13389913 FT /rpt_family="L1" FT /note="85% identity: matches 67..164 of consensus" FT repeat_region 13389940..13390225 FT /rpt_family="L1" FT /note="86% identity: matches 1138..1417 of consensus" FT repeat_region 13390120..13390410 FT /rpt_family="L1" FT /note="80% identity: matches 29..325 of consensus" FT repeat_region 13390393..13390431 FT /rpt_family="L1" FT /note="94% identity: matches 2779..2817 of consensus" FT exon 13390402..13390683 FT /note="GRAIL, score = 45%, comment = marginal" FT repeat_region 13390491..13391287 FT /rpt_family="L1" FT /note="83% identity: matches 3391..4190 of consensus" FT exon complement(13390716..13390779) FT /note="GRAIL, score = 90%, comment = excellent shadow" FT exon 13391202..13391397 FT /note="GRAIL, score = 54%, comment = good" FT repeat_region 13391305..13391562 FT /rpt_family="L1" FT /note="82% identity: matches 358..617 of consensus" FT repeat_region 13391519..13391608 FT /rpt_family="L1" FT /note="84% identity: matches 1009..1097 of consensus" FT repeat_region 13391636..13391704 FT /rpt_family="L1" FT /note="92% identity: matches 24..92 of consensus" FT repeat_region 13391708..13391831 FT /rpt_family="L1" FT /note="83% identity: matches 2299..2422 of consensus" FT repeat_region 13391769..13392269 FT /rpt_family="L1" FT /note="83% identity: matches 2..510 of consensus" FT repeat_region 13392047..13392691 FT /rpt_family="L1" FT /note="82% identity: matches 82..743 of consensus" FT repeat_region complement(13392700..13392973) FT /rpt_family="L1" FT /note="89% identity: matches 245..518 of consensus" FT repeat_region 13392702..13392973 FT /rpt_family="ALU" FT /note="95% identity: matches 313..583 of consensus" FT repeat_region 13392813..13392956 FT /rpt_type=INVERTED FT /note="IR5, 82% complementary to IR5' (62032..62173)" FT repeat_region 13392998..13393314 FT /rpt_family="L1" FT /note="85% identity: matches 726..1044 of consensus" FT exon complement(13393282..13393298) FT /note="XPOUND prediction, score = 0.234" FT repeat_region 13393289..13393342 FT /rpt_family="L1" FT /note="90% identity: matches 248..301 of consensus" FT repeat_region 13393901..13393914 FT /note="TTCAG repeat" FT repeat_region 13394670..13394811 FT /rpt_type=INVERTED FT /note="IR5', 82% complementary to IR5 (60175..60318)" FT repeat_region 13394706..13394920 FT /rpt_family="L1" FT /note="85% identity: matches 215..424 of consensus" FT repeat_region complement(13394709..13394934) FT /rpt_family="ALU" FT /note="91% identity: matches 1..223 of consensus" FT exon complement(13395141..13395271) FT /note="GRAIL, score = 81%, comment = excellent" FT repeat_region 13397360..13397378 FT /note="AAAAT repeat" FT repeat_region 13398258..13398268 FT /note="TA repeat" FT exon 13399092..13399201 FT /note="GRAIL, score = 84%, comment = excellent" FT repeat_region 13399416..13399427 FT /note="AT repeat" FT repeat_region 13399724..13399786 FT /rpt_family="gaaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 74.6%, counts = 7" FT repeat_region 13399750..13399763 FT /note="AAGC repeat" FT repeat_region 13399783..13399797 FT /note="AAGG repeat" FT repeat_region complement(13399818..13399917) FT /rpt_family="L1" FT /note="84% identity: matches 837..936 of consensus" FT repeat_region 13399840..13399918 FT /rpt_family="ALU" FT /note="87% identity: matches 1416..1494 of consensus" FT repeat_region 13399940..13399952 FT /note="AAAT repeat" FT repeat_region 13400106..13400149 FT /rpt_family="ga repeat" FT /rpt_type=TANDEM FT /note="homology = 90.9%, counts = 22" FT repeat_region 13400119..13400149 FT /note="AG repeat" FT exon 13400441..13400478 FT /note="XPOUND prediction, score = 0.369" FT exon complement(13401244..13401433) FT /note="MZEF prediction, score = 0.950" FT repeat_region complement(13402593..13404850) FT /rpt_family="L1" FT /note="93% identity: matches 3760..6022 of consensus" FT exon complement(13403453..13404361) FT /note="GENSCAN prediction, score = 18.71" FT /note="GRAIL, score = 87%, comment = excellent" FT exon complement(13404161..13404312) FT /note="MZEF prediction, score = 0.821" FT exon complement(13404392..13404969) FT /note="GRAIL, score = 66%, comment = good" FT exon complement(13404769..13404896) FT /note="MZEF prediction, score = 0.748" FT repeat_region 13404938..13404952 FT /note="TTG repeat" FT repeat_region complement(13405139..13405288) FT /rpt_family="L1" FT /note="88% identity: matches 17..166 of consensus" FT repeat_region complement(13405254..13405766) FT /rpt_family="L1" FT /note="89% identity: matches 838..1350 of consensus" FT exon complement(13405297..13405449) FT /note="GRAIL, score = 69%, comment = good" FT exon 13405794..13405812 FT /note="XPOUND prediction, score = 0.378" FT repeat_region 13405867..13405880 FT /note="TTA repeat" FT exon 13407029..13407091 FT /note="GRAIL, score = 79%, comment = excellent shadow" FT repeat_region 13407520..13407573 FT /rpt_family="tttctttttttcttttct repeat" FT /rpt_type=TANDEM FT /note="homology = 85.2%, counts = 3" FT repeat_region 13407528..13407545 FT /note="TTTCT repeat" FT repeat_region 13407550..13407565 FT /note="CTTT repeat" FT repeat_region complement(13407595..13407778) FT /rpt_family="ALU" FT /note="91% identity: matches 399..582 of consensus" FT repeat_region 13407658..13407782 FT /rpt_family="L1" FT /note="88% identity: matches 468..592 of consensus" FT exon 13408118..13408211 FT /note="MZEF prediction, score = 0.576" FT exon complement(13408357..13408421) FT /note="GRAIL, score = 83%, comment = excellent" FT exon 13408886..13409026 FT /note="GRAIL, score = 43%, comment = marginal shadow" FT repeat_region complement(13409412..13409530) FT /rpt_family="L1" FT /note="93% identity: matches 17..135 of consensus" FT exon 13409430..13409451 FT /note="XPOUND prediction, score = 0.249" FT exon complement(13410322..13410347) FT /note="XPOUND prediction, score = 0.219" FT exon complement(13411865..13412106) FT /note="MZEF prediction, score = 0.617" FT exon complement(13411872..13412119) FT /note="GRAIL, score = 55%, comment = good" FT exon 13411900..13412110 FT /note="GRAIL, score = 56%, comment = good shadow" FT exon complement(13412457..13412565) FT /note="GRAIL, score = 88%, comment = excellent" FT exon 13414162..13414212 FT /note="GRAIL, score = 64%, comment = good shadow" FT exon 13415125..13415141 FT /note="GENSCAN prediction, score = 2.62" FT repeat_region 13415181..13415203 FT /rpt_type=INVERTED FT /note="IR6, 100% complementary to IR6' (82911..82933)" FT repeat_region 13415549..13415571 FT /rpt_type=INVERTED FT /note="IR6', 100% complementary to IR6 (82543..82565)" FT exon complement(13415969..13416120) FT /note="GRAIL, score = 45%, comment = marginal" FT exon complement(13416039..13416065) FT /note="XPOUND prediction, score = 0.243" FT exon complement(13416398..13416492) FT /note="XPOUND prediction, score = 0.622" FT exon complement(13416398..13416544) FT /note="GRAIL, score = 73%, comment = good" FT /note="MZEF prediction, score = 0.970" FT exon 13416521..13416653 FT /note="GENSCAN prediction, score = 9.73" FT /note="GRAIL, score = 85%, comment = excellent shadow" FT exon 13416628..13416657 FT /note="XPOUND prediction, score = 0.412" FT exon 13416673..13416702 FT /note="XPOUND prediction, score = 0.233" FT exon 13416718..13416720 FT /note="XPOUND prediction, score = 0.203" FT exon 13417030..13417163 FT /note="MZEF prediction, score = 0.778" FT repeat_region 13417071..13417338 FT /rpt_family="ALU" FT /note="89% identity: matches 153..420 of consensus" FT repeat_region complement(13417090..13417338) FT /rpt_family="L1" FT /note="86% identity: matches 167..413 of consensus" FT exon 13417488..13417513 FT /note="XPOUND prediction, score = 0.350" FT exon complement(13418194..13418245) FT /note="MZEF prediction, score = 0.756" FT repeat_region 13419628..13419744 FT /rpt_family="ALU" FT /note="92% identity: matches 468..584 of consensus" FT repeat_region complement(13419628..13419744) FT /rpt_family="L1" FT /note="91% identity: matches 469..585 of consensus" FT repeat_region 13419763..13419825 FT /rpt_family="ALU" FT /note="88% identity: matches 268..330 of consensus" FT repeat_region complement(13419763..13419890) FT /rpt_family="L1" FT /note="83% identity: matches 182..309 of consensus" FT repeat_region 13419801..13419906 FT /rpt_family="ALU" FT /note="94% identity: matches 690..795 of consensus" FT exon 13420725..13420799 FT /note="MZEF prediction, score = 0.602" FT exon 13422143..13422198 FT /note="MZEF prediction, score = 0.675" FT exon 13422374..13422422 FT /note="MZEF prediction, score = 0.717" FT exon 13422994..13423019 FT /note="XPOUND prediction, score = 0.383" FT STS 13422994..13423244 FT /standard_name="HSA297WE9 (D9S1808), Map: 9, Homo sapiens" FT /note="GenBank Accession Number: Z52818" FT repeat_region 13423026..13423049 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 12" FT repeat_region 13423026..13423049 FT /note="TG repeat" FT exon 13423276..13423305 FT /note="XPOUND prediction, score = 0.397" FT exon 13423456..13423544 FT /note="MZEF prediction, score = 0.754" FT repeat_region complement(13423653..13423733) FT /rpt_family="ALU" FT /note="88% identity: matches 956..1036 of consensus" FT repeat_region complement(13423836..13423874) FT /rpt_family="ALU" FT /note="94% identity: matches 401..439 of consensus" FT exon 13424287..13424350 FT /note="XPOUND prediction, score = 0.365" FT exon 13424373..13424380 FT /note="XPOUND prediction, score = 0.223" FT exon 13424382..13424433 FT /note="XPOUND prediction, score = 0.330" FT exon 13424658..13424699 FT /note="XPOUND prediction, score = 0.308" FT repeat_region 13424835..13424847 FT /note="AAGG repeat" FT exon 13424934..13424985 FT /note="GENSCAN prediction, score = 0.76" FT /note="GRAIL, score = 85%, comment = excellent" FT /note="MZEF prediction, score = 0.633" FT /note="XPOUND prediction, score = 0.934" FT repeat_region 13425242..13425254 FT /note="TCCT repeat" FT repeat_region complement(13425279..13425389) FT /rpt_family="L1" FT /note="88% identity: matches 1811..1928 of consensus" FT repeat_region 13425281..13425293 FT /note="TTA repeat" FT repeat_region 13425390..13425413 FT /note="CCTT repeat" FT repeat_region 13425407..13425496 FT /rpt_family="ttttcttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 75.6%, counts = 9" FT repeat_region 13425427..13425439 FT /note="TTTC repeat" FT repeat_region 13425440..13425478 FT /note="CTTT repeat" FT repeat_region complement(13425499..13425610) FT /rpt_family="ALU" FT /note="90% identity: matches 171..284 of consensus" FT repeat_region 13425513..13425581 FT /rpt_family="L1" FT /note="89% identity: matches 176..244 of consensus" FT repeat_region complement(13425662..13425780) FT /rpt_family="ALU" FT /note="88% identity: matches 466..584 of consensus" FT repeat_region 13425662..13425781 FT /rpt_family="L1" FT /note="89% identity: matches 469..588 of consensus" FT repeat_region 13425703..13425778 FT /rpt_type=INVERTED FT /note="IR7, 78% complementary to IR7' (94815..94890)" FT repeat_region 13426005..13426015 FT /note="TA repeat" FT exon 13426078..13426144 FT /note="GRAIL, score = 66%, comment = good" FT exon 13426150..13426183 FT /note="XPOUND prediction, score = 0.351" FT repeat_region 13427452..13427505 FT /rpt_family="ALU" FT /note="96% identity: matches 337..390 of consensus" FT repeat_region 13427453..13427528 FT /rpt_type=INVERTED FT /note="IR7', 78% complementary to IR7 (93065..93140)" FT repeat_region complement(13427456..13427493) FT /rpt_family="L1" FT /note="97% identity: matches 387..424 of consensus" FT exon 13428459..13428543 FT /note="MZEF prediction, score = 0.734" FT repeat_region 13429246..13429359 FT /rpt_family="tttaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 63.2%, counts = 19" FT repeat_region 13429865..13429900 FT /rpt_family="ctaa repeat" FT /rpt_type=TANDEM FT /note="homology = 88.9%, counts = 9" FT repeat_region 13429877..13429889 FT /note="CTAA repeat" FT exon 13430544..13430546 FT /note="XPOUND prediction, score = 0.203" FT repeat_region 13431150..13431163 FT /note="TG repeat" FT exon 13431190..13431285 FT /note="XPOUND prediction, score = 0.756" FT exon complement(13431207..13431400) FT /note="GRAIL, score = 62%, comment = good" FT repeat_region 13431528..13431585 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 82.8%, counts = 29" FT repeat_region 13431544..13431578 FT /rpt_type=INVERTED FT /note="IR8, 94% complementary to IR8' (100138..100172)" FT repeat_region 13431544..13431586 FT /note="TG repeat" FT exon 13431840..13431872 FT /note="XPOUND prediction, score = 0.332" FT exon 13432406..13432553 FT /note="GRAIL, score = 74%, comment = good" FT repeat_region 13432730..13432775 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 97.8%, counts = 23" FT repeat_region 13432732..13432775 FT /note="AT repeat" FT repeat_region 13432776..13432810 FT /rpt_type=INVERTED FT /note="IR8', 94% complementary to IR8 (98906..98940)" FT repeat_region 13432777..13432812 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 18" FT repeat_region 13432777..13432813 FT /note="CA repeat" FT exon complement(13432900..13432989) FT /note="MZEF prediction, score = 0.956" FT repeat_region 13433346..13433622 FT /rpt_family="ALU" FT /note="89% identity: matches 4..278 of consensus" FT repeat_region complement(13433357..13433622) FT /rpt_family="L1" FT /note="88% identity: matches 161..423 of consensus" FT repeat_region 13433624..13433666 FT /note="AAAT repeat" FT repeat_region 13433624..13433667 FT /rpt_family="aaat repeat" FT /rpt_type=TANDEM FT /note="homology = 97.7%, counts = 11" FT repeat_region 13434006..13434034 FT /rpt_type=INVERTED FT /note="IR9, 82% complementary to IR9' (101464..101492)" FT repeat_region 13434102..13434130 FT /rpt_type=INVERTED FT /note="IR9', 82% complementary to IR9 (101368..101396)" FT repeat_region 13436204..13436259 FT /rpt_family="ag repeat" FT /rpt_type=TANDEM FT /note="homology = 75.0%, counts = 28" FT exon 13436360..13436385 FT /note="XPOUND prediction, score = 0.415" FT repeat_region 13437308..13437571 FT /rpt_family="L1" FT /note="82% identity: matches 161..420 of consensus" FT repeat_region complement(13437308..13437584) FT /rpt_family="ALU" FT /note="87% identity: matches 6..279 of consensus" FT repeat_region 13437844..13437857 FT /note="TATGG repeat" FT exon 13438424..13438538 FT /note="GRAIL, score = 80%, comment = excellent" FT exon 13438679..13438758 FT /note="GRAIL, score = 94%, comment = excellent" FT /note="MZEF prediction, score = 0.770" FT exon 13441473..13441505 FT /note="GRAIL, score = 46%, comment = marginal" FT exon complement(13441784..13441834) FT /note="GRAIL, score = 61%, comment = good shadow" FT repeat_region 13442849..13442860 FT /note="AC repeat" FT repeat_region 13444067..13444085 FT /note="TG repeat" FT repeat_region 13444100..13444114 FT /note="GTTTT repeat" FT repeat_region 13444301..13444311 FT /note="CA repeat" FT exon 13445141..13445205 FT /note="GENSCAN prediction, score = 2.57" FT /note="GRAIL, score = 89%, comment = excellent" FT exon 13445186..13445196 FT /note="XPOUND prediction, score = 0.222" FT exon 13445333..13445342 FT /note="XPOUND prediction, score = 0.227" FT exon 13447517..13447639 FT /note="GRAIL, score = 79%, comment = excellent" FT exon 13447521..13447646 FT /note="GENSCAN prediction, score = 1.81" FT repeat_region 13447825..13447835 FT /note="TC repeat" FT repeat_region 13447841..13447853 FT /note="TG repeat" FT exon 13450250..13450310 FT /note="XPOUND prediction, score = 0.232" FT exon 13450615..13450633 FT /note="XPOUND prediction, score = 0.291" FT exon 13451223..13451298 FT /note="XPOUND prediction, score = 0.296" FT exon 13453097..13453178 FT /note="XPOUND prediction, score = 0.357" FT repeat_region 13453274..13453313 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 97.5%, counts = 20" FT repeat_region 13453274..13453314 FT /note="CA repeat" FT repeat_region 13454957..13454970 FT /note="TAAAA repeat" FT repeat_region 13455185..13455216 FT /rpt_family="gttt repeat" FT /rpt_type=TANDEM FT /note="homology = 90.6%, counts = 8" FT repeat_region 13455194..13455216 FT /note="TTTG repeat" FT repeat_region 13455223..13455473 FT /rpt_family="L1" FT /note="84% identity: matches 168..424 of consensus" FT repeat_region complement(13455223..13455487) FT /rpt_family="ALU" FT /note="87% identity: matches 1..273 of consensus" FT exon 13456227..13456245 FT /note="XPOUND prediction, score = 0.246" FT repeat_region 13456422..13456445 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 12" FT repeat_region 13456422..13456446 FT /note="CA repeat" FT repeat_region 13456449..13456459 FT /note="CA repeat" FT exon complement(13457138..13457267) FT /note="GRAIL, score = 59%, comment = good shadow" FT /note="MZEF prediction, score = 0.963" FT exon 13457624..13457707 FT /note="GENSCAN prediction, score = 4.10" FT /note="GRAIL, score = 87%, comment = excellent" FT exon 13457662..13457707 FT /note="XPOUND prediction, score = 0.374" FT exon 13458019..13458048 FT /note="XPOUND prediction, score = 0.214" FT repeat_region 13458536..13458577 FT /rpt_family="tgttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 90.5%, counts = 6" FT repeat_region complement(13458670..13458849) FT /rpt_family="ALU" FT /note="84% identity: matches 871..1049 of consensus" FT exon complement(13459031..13459092) FT /note="MZEF prediction, score = 0.515" FT exon 13459217..13459330 FT /note="GENSCAN prediction, score = 7.30" FT /note="GRAIL, score = 51%, comment = good" FT /note="MZEF prediction, score = 0.726" FT exon 13459439..13459567 FT /note="GRAIL, score = 89%, comment = excellent" FT exon 13459466..13459498 FT /note="XPOUND prediction, score = 0.271" FT exon 13459543..13459576 FT /note="XPOUND prediction, score = 0.450" FT repeat_region complement(13460447..13460599) FT /rpt_family="ALU" FT /note="84% identity: matches 426..578 of consensus" FT repeat_region 13460460..13460568 FT /rpt_family="L1" FT /note="82% identity: matches 175..283 of consensus" FT repeat_region 13460601..13460622 FT /note="TAT repeat" FT repeat_region complement(13460623..13460721) FT /rpt_family="ALU" FT /note="91% identity: matches 1269..1367 of consensus" FT repeat_region 13460623..13460721 FT /rpt_family="L1" FT /note="89% identity: matches 159..257 of consensus" FT repeat_region complement(13460718..13460994) FT /rpt_family="ALU" FT /note="84% identity: matches 335..611 of consensus" FT repeat_region 13460737..13460858 FT /rpt_family="L1" FT /note="88% identity: matches 464..585 of consensus" FT repeat_region 13460873..13461005 FT /rpt_family="L1" FT /note="86% identity: matches 803..935 of consensus" FT exon 13461408..13461467 FT /note="MZEF prediction, score = 0.894" FT exon 13461440..13461467 FT /note="XPOUND prediction, score = 0.285" FT exon complement(13461531..13461583) FT /note="MZEF prediction, score = 0.698" FT exon 13461803..13461899 FT /note="GRAIL, score = 85%, comment = excellent" FT repeat_region 13461876..13461937 FT /rpt_type=INVERTED FT /note="IR11, 80% complementary to IR11' (130506..130567)" FT repeat_region 13461878..13461937 FT /rpt_type=INVERTED FT /note="IR10, 83% complementary to IR10' (130506..130565)" FT exon complement(13461887..13461986) FT /note="MZEF prediction, score = 0.902" FT exon 13463134..13463194 FT /note="MZEF prediction, score = 0.700" FT repeat_region 13463144..13463203 FT /rpt_type=INVERTED FT /note="IR10', 83% complementary to IR10 (129240..129299)" FT repeat_region 13463144..13463205 FT /rpt_type=INVERTED FT /note="IR11', 80% complementary to IR11 (129238..129299)" FT exon 13463178..13463194 FT /note="XPOUND prediction, score = 0.281" FT repeat_region 13463324..13463604 FT /rpt_family="ALU" FT /note="87% identity: matches 1..281 of consensus" FT repeat_region 13463324..13463624 FT /rpt_type=INVERTED FT /note="IR12, 84% complementary to IR12' (131168..131465)" FT repeat_region complement(13463338..13463598) FT /rpt_family="L1" FT /note="84% identity: matches 167..424 of consensus" FT repeat_region 13463605..13463644 FT /rpt_family="aaaaataa repeat" FT /rpt_type=TANDEM FT /note="homology = 85.0%, counts = 5" FT repeat_region 13463615..13463629 FT /note="AAAT repeat" FT repeat_region 13463634..13463649 FT /note="AAT repeat" FT exon 13463651..13463753 FT /note="MZEF prediction, score = 0.502" FT repeat_region 13463806..13464103 FT /rpt_type=INVERTED FT /note="IR12', 84% complementary to IR12 (130686..130986)" FT repeat_region complement(13463825..13464101) FT /rpt_family="ALU" FT /note="88% identity: matches 305..584 of consensus" FT repeat_region 13463825..13464104 FT /rpt_family="L1" FT /note="84% identity: matches 244..527 of consensus" FT exon 13463840..13463879 FT /note="XPOUND prediction, score = 0.365" FT exon complement(13464994..13465052) FT /note="MZEF prediction, score = 0.567" FT exon 13465472..13465501 FT /note="XPOUND prediction, score = 0.338" FT repeat_region 13465844..13465858 FT /note="AGAGA repeat" FT repeat_region 13466050..13466061 FT /note="TG repeat" FT exon complement(13466584..13466773) FT /note="GRAIL, score = 63%, comment = good" FT exon complement(13467355..13467403) FT /note="MZEF prediction, score = 0.886" FT exon complement(13467355..13467452) FT /note="GRAIL, score = 66%, comment = good" FT exon complement(13467635..13467659) FT /note="XPOUND prediction, score = 0.588" FT repeat_region complement(13467952..13468013) FT /rpt_family="L1" FT /note="88% identity: matches 139..200 of consensus" FT exon complement(13468348..13468420) FT /note="MZEF prediction, score = 0.696" FT exon complement(13468623..13468672) FT /note="XPOUND prediction, score = 0.295" FT exon complement(13468642..13468758) FT /note="GRAIL, score = 70%, comment = good" FT exon 13469806..13469849 FT /note="XPOUND prediction, score = 0.602" FT exon 13469835..13469948 FT /note="GRAIL, score = 65%, comment = good shadow" FT exon complement(13470278..13470347) FT /note="MZEF prediction, score = 0.638" FT repeat_region complement(13471350..13471528) FT /rpt_family="L1" FT /note="82% identity: matches 90..262 of consensus" FT repeat_region complement(13471493..13471789) FT /rpt_family="L1" FT /note="82% identity: matches 95..391 of consensus" FT repeat_region complement(13471661..13472103) FT /rpt_family="L1" FT /note="84% identity: matches 782..1224 of consensus" FT exon 13471916..13471950 FT /note="GRAIL, score = 76%, comment = excellent" FT repeat_region complement(13472032..13472174) FT /rpt_family="L1" FT /note="81% identity: matches 452..599 of consensus" FT repeat_region complement(13472201..13472854) FT /rpt_family="L1" FT /note="82% identity: matches 104..757 of consensus" FT repeat_region complement(13472887..13472989) FT /rpt_family="L1" FT /note="84% identity: matches 2033..2134 of consensus" FT repeat_region complement(13472944..13473203) FT /rpt_family="L1" FT /note="82% identity: matches 252..505 of consensus" FT repeat_region complement(13473171..13473270) FT /rpt_family="L1" FT /note="84% identity: matches 119..218 of consensus" FT repeat_region complement(13473221..13473347) FT /rpt_family="L1" FT /note="86% identity: matches 2355..2482 of consensus" FT repeat_region complement(13473419..13473473) FT /rpt_family="L1" FT /note="94% identity: matches 333..387 of consensus" FT repeat_region complement(13473529..13473935) FT /rpt_family="L1" FT /note="81% identity: matches 3361..3771 of consensus" FT repeat_region complement(13473977..13474060) FT /rpt_family="L1" FT /note="84% identity: matches 1002..1085 of consensus" FT repeat_region 13474168..13474181 FT /note="TTCT repeat" FT repeat_region complement(13474289..13474592) FT /rpt_family="L1" FT /note="81% identity: matches 101..404 of consensus" FT repeat_region complement(13474837..13475359) FT /rpt_family="L1" FT /note="79% identity: matches 1841..2360 of consensus" FT repeat_region complement(13475465..13475980) FT /rpt_family="L1" FT /note="82% identity: matches 168..681 of consensus" FT repeat_region complement(13476065..13476154) FT /rpt_family="L1" FT /note="85% identity: matches 1..90 of consensus" FT exon 13476315..13476359 FT /note="MZEF prediction, score = 0.552" FT repeat_region 13476441..13476508 FT /rpt_family="gtttttgttgttttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 79.4%, counts = 4" FT repeat_region 13476473..13476489 FT /note="TTG repeat" FT repeat_region 13476514..13476779 FT /rpt_family="L1" FT /note="88% identity: matches 250..516 of consensus" FT repeat_region complement(13476514..13476781) FT /rpt_family="ALU" FT /note="91% identity: matches 311..578 of consensus" FT exon 13477087..13477089 FT /note="XPOUND prediction, score = 0.204" FT exon 13477240..13477429 FT /note="GENSCAN prediction, score = 9.62" FT exon 13477294..13477429 FT /note="GRAIL, score = 45%, comment = marginal" FT exon 13477311..13477461 FT /note="XPOUND prediction, score = 0.672" FT exon 13477684..13477755 FT /note="GENSCAN prediction, score = 0.26" FT exon 13477739..13477755 FT /note="XPOUND prediction, score = 0.285" FT exon 13477976..13478026 FT /note="GENSCAN prediction, score = 2.06" FT exon 13478243..13478271 FT /note="XPOUND prediction, score = 0.271" FT exon 13479085..13479092 FT /note="XPOUND prediction, score = 0.213" FT exon complement(13480582..13480737) FT /note="GRAIL, score = 45%, comment = marginal" FT exon 13481505..13481674 FT /note="GENSCAN prediction, score = 0.16" FT repeat_region 13481934..13481947 FT /note="AAAAC repeat" FT exon complement(13482248..13482363) FT /note="XPOUND prediction, score = 0.653" FT repeat_region 13482275..13482322 FT /rpt_family="ctcctt repeat" FT /rpt_type=TANDEM FT /note="homology = 81.2%, counts = 8" FT exon complement(13482652..13482744) FT /note="MZEF prediction, score = 0.757" FT repeat_region 13483123..13483185 FT /rpt_family="tct repeat" FT /rpt_type=TANDEM FT /note="homology = 69.8%, counts = 21" FT exon complement(13483234..13483270) FT /note="XPOUND prediction, score = 0.298" FT repeat_region 13483237..13483250 FT /note="TCC repeat" FT exon complement(13483732..13483796) FT /note="XPOUND prediction, score = 0.431" FT exon complement(13484971..13485074) FT /note="GENSCAN prediction, score = 1.16" FT exon complement(13485297..13485470) FT /note="GRAIL, score = 66%, comment = good" FT exon complement(13485305..13485470) FT /note="MZEF prediction, score = 0.640" FT repeat_region 13486226..13486460 FT /rpt_family="ALU" FT /note="86% identity: matches 6..240 of consensus" FT repeat_region complement(13486232..13486353) FT /rpt_family="L1" FT /note="89% identity: matches 464..585 of consensus" FT repeat_region complement(13486384..13486429) FT /rpt_family="L1" FT /note="93% identity: matches 383..428 of consensus" FT exon 13487660..13487802 FT /note="MZEF prediction, score = 0.789" FT exon complement(13487709..13487776) FT /note="XPOUND prediction, score = 0.222" FT exon complement(13489032..13489041) FT /note="XPOUND prediction, score = 0.287" FT exon 13489064..13489200 FT /note="GRAIL, score = 55%, comment = good" FT repeat_region 13489653..13489670 FT /note="TA repeat" FT exon complement(13489778..13489820) FT /note="GENSCAN prediction, score = 1.89" FT /note="MZEF prediction, score = 0.530" FT repeat_region 13490526..13490564 FT /note="TTTTG repeat" FT repeat_region 13490526..13490565 FT /rpt_family="ttttg repeat" FT /rpt_type=TANDEM FT /note="homology = 97.5%, counts = 8" FT exon 13491782..13491867 FT /note="GRAIL, score = 52%, comment = good" FT exon complement(13492057..13492098) FT /note="XPOUND prediction, score = 0.234" FT exon complement(13492057..13492116) FT /note="MZEF prediction, score = 0.583" FT exon complement(13492485..13492613) FT /note="MZEF prediction, score = 0.875" FT repeat_region 13492800..13492812 FT /note="TCAT repeat" FT repeat_region 13494015..13494032 FT /rpt_type=INVERTED FT /note="IR13, 100% complementary to IR13' (161890..161907)" FT exon complement(13494407..13494417) FT /note="XPOUND prediction, score = 0.340" FT repeat_region 13494528..13494545 FT /rpt_type=INVERTED FT /note="IR13', 100% complementary to IR13 (161377..161394)" FT repeat_region complement(13495115..13495346) FT /rpt_family="L1" FT /note="80% identity: matches 585..814 of consensus" FT repeat_region 13495381..13495562 FT /rpt_family="L1" FT /note="83% identity: matches 1122..1303 of consensus" FT exon 13495472..13495650 FT /note="GRAIL, score = 66%, comment = good shadow" FT repeat_region 13495506..13495646 FT /rpt_family="L1" FT /note="84% identity: matches 4..140 of consensus" FT exon complement(13496059..13496075) FT /note="XPOUND prediction, score = 0.260" FT exon complement(13496059..13496164) FT /note="GRAIL, score = 68%, comment = good" FT /note="MZEF prediction, score = 0.887" FT exon complement(13496134..13496149) FT /note="XPOUND prediction, score = 0.286" FT repeat_region 13496242..13496421 FT /rpt_family="ataagtaaaaaacaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 61.7%, counts = 9" FT repeat_region 13496466..13496488 FT /note="AAAC repeat" FT repeat_region complement(13497585..13497690) FT /rpt_family="ALU" FT /note="93% identity: matches 310..415 of consensus" FT repeat_region 13497585..13497699 FT /rpt_family="L1" FT /note="87% identity: matches 401..515 of consensus" FT exon complement(13497616..13497626) FT /note="XPOUND prediction, score = 0.228" FT repeat_region complement(13497808..13498067) FT /rpt_family="L1" FT /note="82% identity: matches 169..424 of consensus" FT repeat_region 13497829..13498062 FT /rpt_family="ALU" FT /note="88% identity: matches 19..254 of consensus" FT STS 13497885..13498034 FT /standard_name="WIAF-4025-STS (D11S4975), Map: 72.40, Homo FT sapiens" FT /note="GenBank Accession Number: G44365" FT repeat_region 13498079..13498123 FT /rpt_family="aaaac repeat" FT /rpt_type=TANDEM FT /note="homology = 84.4%, counts = 9" FT repeat_region 13498099..13498113 FT /note="AAAAC repeat" FT repeat_region 13498227..13498277 FT /rpt_family="THE" FT /note="90% identity: matches 3..53 of consensus" FT exon complement(13498263..13498345) FT /note="GRAIL, score = 81%, comment = excellent" FT repeat_region 13498285..13498397 FT /rpt_family="THE" FT /note="86% identity: matches 58..171 of consensus" FT exon 13498418..13498484 FT /note="XPOUND prediction, score = 0.311" FT exon complement(13498422..13498519) FT /note="XPOUND prediction, score = 0.434" FT exon complement(13498427..13498480) FT /note="GENSCAN prediction, score = 8.44" FT exon complement(13498427..13498493) FT /note="GRAIL, score = 83%, comment = excellent" FT repeat_region 13498480..13498603 FT /rpt_family="THE" FT /note="86% identity: matches 176..298 of consensus" FT exon complement(13498557..13498620) FT /note="MZEF prediction, score = 0.506" FT exon 13498607..13498626 FT /note="XPOUND prediction, score = 0.602" FT exon 13500235..13500290 FT /note="GRAIL, score = 56%, comment = good shadow" FT exon 13501099..13501186 FT /note="GRAIL, score = 78%, comment = excellent shadow" FT exon complement(13501647..13501762) FT /note="GRAIL, score = 72%, comment = good" FT exon 13501821..13501845 FT /note="XPOUND prediction, score = 0.227" FT repeat_region 13502276..13502309 FT /rpt_family="L1" FT /note="97% identity: matches 70..103 of consensus" FT exon 13502514..13502652 FT /note="XPOUND prediction, score = 0.786" FT repeat_region 13502622..13502644 FT /note="TGTGC repeat" FT exon complement(13502674..13503042) FT /note="GENSCAN prediction, score = 8.26" FT /note="GRAIL, score = 62%, comment = good" FT exon complement(13503139..13503205) FT /note="GRAIL, score = 86%, comment = excellent" FT repeat_region 13503504..13503547 FT /rpt_family="ttgt repeat" FT /rpt_type=TANDEM FT /note="homology = 81.8%, counts = 11" FT repeat_region complement(13504930..13505288) FT /rpt_family="THE" FT /note="83% identity: matches 1..360 of consensus" FT repeat_region 13505446..13505540 FT /rpt_family="ALU" FT /note="86% identity: matches 651..745 of consensus" FT repeat_region 13505643..13505716 FT /rpt_family="ALU" FT /note="86% identity: matches 34..107 of consensus" FT repeat_region 13506156..13506335 FT /rpt_family="L1" FT /note="86% identity: matches 161..339 of consensus" FT repeat_region complement(13506156..13506426) FT /rpt_family="ALU" FT /note="89% identity: matches 11..282 of consensus" FT repeat_region 13506306..13506425 FT /rpt_family="L1" FT /note="88% identity: matches 464..585 of consensus" FT exon 13506993..13507147 FT /note="MZEF prediction, score = 0.683" FT repeat_region 13507074..13507157 FT /rpt_family="ALU" FT /note="91% identity: matches 899..980 of consensus" FT repeat_region complement(13507117..13507322) FT /rpt_family="L1" FT /note="84% identity: matches 251..458 of consensus" FT repeat_region 13507122..13507326 FT /rpt_family="ALU" FT /note="91% identity: matches 1..205 of consensus" FT exon 13507123..13507153 FT /note="XPOUND prediction, score = 0.529" FT misc_feature 13526895 FT /note="Clone_right_end: RP11-378F20" FT misc_feature 13626333 FT /note="Clone_left_end: RP11-261H15" FT misc_feature 13713588 FT /note="Clone_right_end: RP11-311A12" FT misc_feature 13737563 FT /note="Clone_left_end: RP11-413D24" FT misc_feature 13805448 FT /note="Clone_right_end: RP11-261H15" FT misc_feature 13922872 FT /note="Clone_right_end: RP11-413D24" FT misc_feature 13922973..13936301 FT /note="annotated region of clone" FT mRNA join(13927970..13928060,AL360089.13:10073..10149, FT AL360089.13:11090..11308) FT /gene="C9orf146" FT /locus_tag="RP11-284P20.1-001" FT /product="chromosome 9 open reading frame 146" FT /note="match: ESTs: Em:AI286110.1 Em:AW070422.1" FT CDS join(13928036..13928060,AL360089.13:10073..10149, FT AL360089.13:11090..11164) FT /gene="C9orf146" FT /locus_tag="RP11-284P20.1-001" FT /standard_name="OTTHUMP00000021059" FT /product="chromosome 9 open reading frame 146" FT /protein_id="CAI15473.1" FT /translation="MPNRHKTKDQTLLPAQQYIWLLNSHTQMTAPVPQFKLSETASLLC FT KRKISTAMSSTCL" FT misc_feature 13932302 FT /note="Clone_left_end: RP11-284P20" FT misc_feature 13936302..14063564 FT /note="annotated region of clone" FT mRNA join(AL691508.8:6998..7088,13944374..13944450, FT 13945391..13945609) FT /gene="C9orf146" FT /locus_tag="RP11-284P20.1-001" FT /product="chromosome 9 open reading frame 146" FT /note="match: ESTs: Em:AI286110.1 Em:AW070422.1" FT CDS join(AL691508.8:7064..7088,13944374..13944450, FT 13945391..13945465) FT /gene="C9orf146" FT /locus_tag="RP11-284P20.1-001" FT /standard_name="OTTHUMP00000021059" FT /product="chromosome 9 open reading frame 146" FT /protein_id="CAH71984.1" FT /translation="MPNRHKTKDQTLLPAQQYIWLLNSHTQMTAPVPQFKLSETASLLC FT KRKISTAMSSTCL" FT misc_feature 13952497 FT /note="Clone_left_end: RP11-18O16" FT CDS 13986174..13987908 FT /pseudo FT /locus_tag="RP11-284P20.2-001" FT /product="pescadillo homolog 1, containing BRCT domain FT (zebrafish) (PES1) pseudogene" FT /note="match: proteins: Sw:O00541 Sw:O00541 Sw:O60164 FT Sw:P53261 Sw:P79741 Sw:Q9EQ61 Tr:O97209 Tr:Q95Y89 Tr:Q9LYK7 FT Tr:Q9VL96" FT mRNA join(14025970..14026076,14026943..14027108, FT 14029952..14030114) FT /locus_tag="RP11-284P20.3-001" FT /product="novel transcript" FT /note="match: ESTs: Em:AI684479.1" FT CDS 14040720..14041860 FT /pseudo FT /locus_tag="RP11-284P20.4-001" FT /product="ribosomal protein L3 (RPL3) pseudogene" FT /note="match: proteins: Sw:O16797 Sw:P14126 Sw:P36584 FT Sw:P39872 Sw:P40372 Sw:P50880 Sw:Q8NKF4 Tr:Q8MUF0 Tr:Q8WQI9 FT Tr:Q90YW8 Tr:Q96QL0 Tr:Q9UV31" FT misc_feature 14061465 FT /note="Clone_left_end: RP11-280O24" FT misc_feature 14063565..14222940 FT /note="annotated region of clone" FT CDS 14068931..14069411 FT /pseudo FT /locus_tag="RP11-280O24.1-009" FT /product="ATP synthase, H+ transporting, mitochondrial F0 FT complex, subunit d (ATP5H) pseudogene" FT /note="match: proteins: Sw:O75947 Sw:O75947 Sw:O75947 FT Sw:P13620 Sw:P31399 Sw:Q24251 Sw:Q9DCX2 Sw:Q9DCX2 FT Tr:Q8MTU3" FT polyA_site complement(14081847) FT polyA_signal complement(14081864..14081869) FT misc_feature 14114205 FT /note="Clone_right_end: RP11-284P20" FT misc_feature 14118391 FT /note="Clone_right_end: RP11-18O16" FT CDS complement(join(14088308..14088325,14120439..14120623, FT 14125631..14125765,14146688..14146806,14150144..14150193)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-008" FT /standard_name="OTTHUMP00000022771" FT /product="nuclear factor I/B" FT /protein_id="CAH71969.1" FT /translation="MNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPSSPA FT AGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVIS FT TRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQ FT SWYLG" FT mRNA complement(join(14081847..14088325,14120439..14120623, FT 14125631..14125765,14146688..14146806,14150144..14150264, FT 14155824..14155892,14179726..14179779, FT AL136366.24:84054..84585,AL136366.24:90547..91050)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-001" FT /product="nuclear factor I/B" FT /note="match: ESTs: Em:AA876721.1 Em:AI021705.1 FT Em:AI091820.1 Em:AI913353.1 Em:AL517486.1 Em:AL517487.1 FT Em:AL600398.1 Em:AU076656.1 Em:AU120586.1 Em:AU120893.1 FT Em:AU121764.1 Em:AW651696.1 Em:AW744195.1 Em:BE177687.1 FT Em:BE544337.1 Em:BE883134.1 Em:BE884704.1 Em:BE889930.1 FT Em:BF667073.1 Em:BF667630.1 Em:BG033280.1 Em:BG429493.1 FT Em:BG619290.1 Em:BG998707.1 Em:BM458097.1 Em:BM459843.1 FT Em:BM468090.1 Em:BM473999.1 Em:BM477001.1 Em:BM547480.1 FT Em:BM924305.1 Em:BM945685.1 Em:BQ050715.1 Em:BQ050777.1 FT Em:BQ068224.1 Em:BQ178188.1 Em:BQ277165.1 Em:BQ434455.1 FT Em:BQ575086.1 Em:BQ771675.1 Em:BQ897087.1 Em:BQ923127.1 FT Em:BQ940552.1 Em:BQ946078.1 Em:BQ948681.1 Em:BQ962824.1 FT Em:BU147317.1 Em:BU166043.1 Em:BU172496.1 Em:BU193670.1 FT Em:BU508956.1 Em:BU509329.1 Em:BU521484.1 Em:BU619880.1 FT Em:BU838484.1 Em:BU902064.1 Em:CA312975.1" FT /note="match: cDNAs: Em:AK094066.1 Em:AL110126.1 FT Em:BC001283.1 Em:BC024316.1 Em:U85193.1" FT CDS complement(join(14088308..14088325,14120439..14120623, FT 14125631..14125765,14146688..14146806,14150144..14150264, FT 14155824..14155892,14179726..14179779, FT AL136366.24:84054..84585,AL136366.24:90547..90576)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-001" FT /standard_name="OTTHUMP00000022765" FT /product="nuclear factor I/B" FT /note="match: proteins: Sw:O00712 Sw:O00712 Tr:Q6GSP7 FT Tr:Q6GSP7" FT /protein_id="CAH71972.1" FT /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKH FT EKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCC FT VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALC FT VQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSE FT LVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENM FT EPSPTGDFYPSPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFP FT QHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTL FT KNYVPSYDPSSPQTSQSWYLG" FT mRNA complement(join(14087602..14088325,14102421..14102509, FT 14120439..14120623,14125631..14125765,14146688..14146806, FT 14150144..14150264,14155824..14155892,14179726..14179779, FT AL136366.24:84054..84585,AL136366.24:90547..91647)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-002" FT /product="nuclear factor I/B" FT /note="match: ESTs: Em:BF541662.1 Em:H91814.1" FT /note="match: cDNAs: Em:Y07687.1" FT CDS complement(join(14088196..14088325,14102421..14102509, FT 14120439..14120623,14125631..14125765,14146688..14146806, FT 14150144..14150264,14155824..14155892,14179726..14179779, FT AL136366.24:84054..84585,AL136366.24:90547..90576)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-002" FT /standard_name="OTTHUMP00000022766" FT /product="nuclear factor I/B" FT /protein_id="CAH71973.1" FT /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKH FT EKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCC FT VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALC FT VQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSE FT LVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENM FT EPSPTGDFYPSPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFP FT QHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTL FT KNYVPSYDPSSPQTSQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQVS FT NRTPILPANVQNYGLNIIGEPFLQAETSN" FT mRNA complement(join(14087599..14088325,14102421..14102509, FT 14112998..14113080,14116180..14116345,14120439..14120623, FT 14125631..14125765,14146688..14146806,14150144..14150264, FT 14155824..14155892,14179726..14179779, FT AL136366.24:84054..84585,AL136366.24:90547..91584)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-003" FT /product="nuclear factor I/B" FT /note="match: ESTs: Em:AA486704.1 Em:AA486898.1 FT Em:AA492856.1 Em:AA510173.1 Em:AA673456.1 Em:AW762621.1 FT Em:BE889468.1 Em:BF452310.1 Em:BG609177.1" FT /note="match: cDNAs: Em:BC014290.1 Em:Y07685.1" FT CDS complement(join(14088196..14088325,14102421..14102509, FT 14112998..14113080,14116180..14116345,14120439..14120623, FT 14125631..14125765,14146688..14146806,14150144..14150264, FT 14155824..14155892,14179726..14179779, FT AL136366.24:84054..84585,AL136366.24:90547..90576)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-003" FT /standard_name="OTTHUMP00000022767" FT /product="nuclear factor I/B" FT /note="match: proteins: Sw:P97863 Sw:P97863" FT /protein_id="CAH71974.1" FT /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKH FT EKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCC FT VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALC FT VQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSE FT LVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENM FT EPSPTGDFYPSPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFP FT QHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTL FT KNYVPSYDPSSPQTSQPNGSGQVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITT FT STEGEAASPTATTYTASGTSQANRYVGLSPRDPSFLHQQQLRICDWTMNQNGRHLYPST FT SEDTLGITWQSPGTWASLVPFQVSNRTPILPANVQNYGLNIIGEPFLQAETSN" FT mRNA complement(join(14087571..14088325,14102421..14102509, FT 14112998..14113080,14116207..14116345,14120439..14120623, FT 14125631..14125765,14146688..14146806,14150144..14150264, FT 14155824..14155892,14179726..14179779, FT AL136366.24:84054..84585,AL136366.24:90547..91134)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-004" FT /product="nuclear factor I/B" FT /note="match: ESTs: Em:AA467421.1 Em:AA500678.1 FT Em:AI022136.1 Em:BE286479.1 Em:BF198930.1 Em:BG742798.1 FT Em:BG925855.1 Em:BM829424.1" FT /note="match: cDNAs: Em:AB012230.1 Em:J04122.1 Em:X51485.1" FT CDS complement(join(14088196..14088325,14102421..14102509, FT 14112998..14113080,14116207..14116345,14120439..14120623, FT 14125631..14125765,14146688..14146806,14150144..14150264, FT 14155824..14155892,14179726..14179779, FT AL136366.24:84054..84585,AL136366.24:90547..90576)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-004" FT /standard_name="OTTHUMP00000022768" FT /product="nuclear factor I/B" FT /note="match: proteins: Sw:P13622 Sw:P17924 Tr:O70185" FT /protein_id="CAH71970.1" FT /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKH FT EKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCC FT VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALC FT VQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSE FT LVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENM FT EPSPTGDFYPSPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFP FT QHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTL FT KNYVPSYDPSSPQTSQPNGSGQVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITT FT STEAYTASGTSQANRYVGLSPRDPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITW FT QSPGTWASLVPFQVSNRTPILPANVQNYGLNIIGEPFLQAETSN" FT mRNA complement(join(14087568..14088325,14112998..14113080, FT 14116207..14116345,14120439..14120623,14125631..14125765, FT 14146688..14146806,14150144..14150264,14155824..14155892, FT 14179726..14179779,AL136366.24:84054..84585, FT AL136366.24:90547..90732)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-005" FT /product="nuclear factor I/B" FT /note="match: cDNAs: Em:AB012231.1 Em:BC023366.1" FT CDS complement(join(14088308..14088325,14112998..14113080, FT 14116207..14116345,14120439..14120623,14125631..14125765, FT 14146688..14146806,14150144..14150264,14155824..14155892, FT 14179726..14179779,AL136366.24:84054..84585, FT AL136366.24:90547..90576)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-005" FT /standard_name="OTTHUMP00000022769" FT /product="nuclear factor I/B" FT /note="match: proteins: Tr:O70186" FT /protein_id="CAH71971.1" FT /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKH FT EKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCC FT VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALC FT VQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSE FT LVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENM FT EPSPTGDFYPSPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFP FT QHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTL FT KNYVPSYDPSSPQTSQPNGSGQVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITT FT STEAYTASGTSQANRYVGLSPRDPSFLHQQQSWYLG" FT misc_feature 14168215 FT /note="Clone_left_end: RP11-54D21" FT mRNA complement(join(14088303..14088325,14120439..14120623, FT 14125631..14125765,14146688..14146806,14150144..14150264, FT 14155824..14155892,14179726..14179779,14180658..14180791)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-008" FT /product="nuclear factor I/B" FT /note="match: ESTs: Em:AU121970.1 Em:AU122316.1" FT CDS 14204247..14205038 FT /pseudo FT /locus_tag="RP11-280O24.3-001" FT /product="ribosomal protein L7a (RPL7A) pseudogene" FT /note="match: proteins: Sw:P12970 Sw:P12970 Sw:P32429 FT Sw:P62425 Sw:Q90YW2 Tr:Q8MKB9" FT misc_feature 14205079..14205158 FT /note="Weak data" FT misc_feature 14205158 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 100bp by restriction digest data" FT misc_feature 14222840 FT /note="Clone_right_end: RP11-280O24" FT misc_feature 14222941..14223034 FT /note="annotated region of clone" FT misc_feature 14223035..14343216 FT /note="annotated region of clone" FT misc_feature 14287313..14287317 FT /note="Single clone region. Sequence from reads from a FT short insert library derived from a single pUC clone. FT Restriction digest data confirm the assembly" FT polyA_site complement(14305752) FT polyA_signal complement(14305780..14305785) FT mRNA complement(join(14307035..14307519,14307907..14308012)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-007" FT /product="nuclear factor I/B" FT /note="match: ESTs: Em:BI545001.1 Em:BI549028.1" FT mRNA complement(join(AL441963.7:18383..24861, FT AL441963.7:56975..57159,AL441963.7:62167..62301, FT AL441963.7:83224..83342,AL441963.7:86680..86800, FT AL441963.7:92360..92428,AL441963.7:116262..116315, FT 14306988..14307519,14313481..14313984)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-001" FT /product="nuclear factor I/B" FT /note="match: ESTs: Em:AA876721.1 Em:AI021705.1 FT Em:AI091820.1 Em:AI913353.1 Em:AL517486.1 Em:AL517487.1 FT Em:AL600398.1 Em:AU076656.1 Em:AU120586.1 Em:AU120893.1 FT Em:AU121764.1 Em:AW651696.1 Em:AW744195.1 Em:BE177687.1 FT Em:BE544337.1 Em:BE883134.1 Em:BE884704.1 Em:BE889930.1 FT Em:BF667073.1 Em:BF667630.1 Em:BG033280.1 Em:BG429493.1 FT Em:BG619290.1 Em:BG998707.1 Em:BM458097.1 Em:BM459843.1 FT Em:BM468090.1 Em:BM473999.1 Em:BM477001.1 Em:BM547480.1 FT Em:BM924305.1 Em:BM945685.1 Em:BQ050715.1 Em:BQ050777.1 FT Em:BQ068224.1 Em:BQ178188.1 Em:BQ277165.1 Em:BQ434455.1 FT Em:BQ575086.1 Em:BQ771675.1 Em:BQ897087.1 Em:BQ923127.1 FT Em:BQ940552.1 Em:BQ946078.1 Em:BQ948681.1 Em:BQ962824.1 FT Em:BU147317.1 Em:BU166043.1 Em:BU172496.1 Em:BU193670.1 FT Em:BU508956.1 Em:BU509329.1 Em:BU521484.1 Em:BU619880.1 FT Em:BU838484.1 Em:BU902064.1 Em:CA312975.1" FT /note="match: cDNAs: Em:AK094066.1 Em:AL110126.1 FT Em:BC001283.1 Em:BC024316.1 Em:U85193.1" FT CDS complement(join(AL441963.7:24844..24861, FT AL441963.7:56975..57159,AL441963.7:62167..62301, FT AL441963.7:83224..83342,AL441963.7:86680..86800, FT AL441963.7:92360..92428,AL441963.7:116262..116315, FT 14306988..14307519,14313481..14313510)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-001" FT /standard_name="OTTHUMP00000022765" FT /product="nuclear factor I/B" FT /note="match: proteins: Sw:O00712 Sw:O00712 Tr:Q6GSP7 FT Tr:Q6GSP7" FT /protein_id="CAH73586.1" FT /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKH FT EKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCC FT VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALC FT VQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSE FT LVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENM FT EPSPTGDFYPSPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFP FT QHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTL FT KNYVPSYDPSSPQTSQSWYLG" FT mRNA complement(join(AL441963.7:24138..24861, FT AL441963.7:38957..39045,AL441963.7:56975..57159, FT AL441963.7:62167..62301,AL441963.7:83224..83342, FT AL441963.7:86680..86800,AL441963.7:92360..92428, FT AL441963.7:116262..116315,14306988..14307519, FT 14313481..14314581)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-002" FT /product="nuclear factor I/B" FT /note="match: ESTs: Em:BF541662.1 Em:H91814.1" FT /note="match: cDNAs: Em:Y07687.1" FT CDS complement(join(AL441963.7:24732..24861, FT AL441963.7:38957..39045,AL441963.7:56975..57159, FT AL441963.7:62167..62301,AL441963.7:83224..83342, FT AL441963.7:86680..86800,AL441963.7:92360..92428, FT AL441963.7:116262..116315,14306988..14307519, FT 14313481..14313510)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-002" FT /standard_name="OTTHUMP00000022766" FT /product="nuclear factor I/B" FT /protein_id="CAH73583.1" FT /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKH FT EKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCC FT VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALC FT VQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSE FT LVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENM FT EPSPTGDFYPSPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFP FT QHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTL FT KNYVPSYDPSSPQTSQLRICDWTMNQNGRHLYPSTSEDTLGITWQSPGTWASLVPFQVS FT NRTPILPANVQNYGLNIIGEPFLQAETSN" FT mRNA complement(join(AL441963.7:24135..24861, FT AL441963.7:38957..39045,AL441963.7:49534..49616, FT AL441963.7:52716..52881,AL441963.7:56975..57159, FT AL441963.7:62167..62301,AL441963.7:83224..83342, FT AL441963.7:86680..86800,AL441963.7:92360..92428, FT AL441963.7:116262..116315,14306988..14307519, FT 14313481..14314518)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-003" FT /product="nuclear factor I/B" FT /note="match: ESTs: Em:AA486704.1 Em:AA486898.1 FT Em:AA492856.1 Em:AA510173.1 Em:AA673456.1 Em:AW762621.1 FT Em:BE889468.1 Em:BF452310.1 Em:BG609177.1" FT /note="match: cDNAs: Em:BC014290.1 Em:Y07685.1" FT CDS complement(join(AL441963.7:24732..24861, FT AL441963.7:38957..39045,AL441963.7:49534..49616, FT AL441963.7:52716..52881,AL441963.7:56975..57159, FT AL441963.7:62167..62301,AL441963.7:83224..83342, FT AL441963.7:86680..86800,AL441963.7:92360..92428, FT AL441963.7:116262..116315,14306988..14307519, FT 14313481..14313510)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-003" FT /standard_name="OTTHUMP00000022767" FT /product="nuclear factor I/B" FT /note="match: proteins: Sw:P97863 Sw:P97863" FT /protein_id="CAH73587.1" FT /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKH FT EKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCC FT VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALC FT VQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSE FT LVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENM FT EPSPTGDFYPSPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFP FT QHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTL FT KNYVPSYDPSSPQTSQPNGSGQVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITT FT STEGEAASPTATTYTASGTSQANRYVGLSPRDPSFLHQQQLRICDWTMNQNGRHLYPST FT SEDTLGITWQSPGTWASLVPFQVSNRTPILPANVQNYGLNIIGEPFLQAETSN" FT mRNA complement(join(AL441963.7:24107..24861, FT AL441963.7:38957..39045,AL441963.7:49534..49616, FT AL441963.7:52743..52881,AL441963.7:56975..57159, FT AL441963.7:62167..62301,AL441963.7:83224..83342, FT AL441963.7:86680..86800,AL441963.7:92360..92428, FT AL441963.7:116262..116315,14306988..14307519, FT 14313481..14314068)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-004" FT /product="nuclear factor I/B" FT /note="match: ESTs: Em:AA467421.1 Em:AA500678.1 FT Em:AI022136.1 Em:BE286479.1 Em:BF198930.1 Em:BG742798.1 FT Em:BG925855.1 Em:BM829424.1" FT /note="match: cDNAs: Em:AB012230.1 Em:J04122.1 Em:X51485.1" FT CDS complement(join(AL441963.7:24732..24861, FT AL441963.7:38957..39045,AL441963.7:49534..49616, FT AL441963.7:52743..52881,AL441963.7:56975..57159, FT AL441963.7:62167..62301,AL441963.7:83224..83342, FT AL441963.7:86680..86800,AL441963.7:92360..92428, FT AL441963.7:116262..116315,14306988..14307519, FT 14313481..14313510)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-004" FT /standard_name="OTTHUMP00000022768" FT /product="nuclear factor I/B" FT /note="match: proteins: Sw:P13622 Sw:P17924 Tr:O70185" FT /protein_id="CAH73584.1" FT /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKH FT EKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCC FT VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALC FT VQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSE FT LVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENM FT EPSPTGDFYPSPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFP FT QHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTL FT KNYVPSYDPSSPQTSQPNGSGQVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITT FT STEAYTASGTSQANRYVGLSPRDPSFLHQQQLRICDWTMNQNGRHLYPSTSEDTLGITW FT QSPGTWASLVPFQVSNRTPILPANVQNYGLNIIGEPFLQAETSN" FT mRNA complement(join(AL441963.7:24104..24861, FT AL441963.7:49534..49616,AL441963.7:52743..52881, FT AL441963.7:56975..57159,AL441963.7:62167..62301, FT AL441963.7:83224..83342,AL441963.7:86680..86800, FT AL441963.7:92360..92428,AL441963.7:116262..116315, FT 14306988..14307519,14313481..14313666)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-005" FT /product="nuclear factor I/B" FT /note="match: cDNAs: Em:AB012231.1 Em:BC023366.1" FT CDS complement(join(AL441963.7:24844..24861, FT AL441963.7:49534..49616,AL441963.7:52743..52881, FT AL441963.7:56975..57159,AL441963.7:62167..62301, FT AL441963.7:83224..83342,AL441963.7:86680..86800, FT AL441963.7:92360..92428,AL441963.7:116262..116315, FT 14306988..14307519,14313481..14313510)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-005" FT /standard_name="OTTHUMP00000022769" FT /product="nuclear factor I/B" FT /note="match: proteins: Tr:O70186" FT /protein_id="CAH73585.1" FT /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKH FT EKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCC FT VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALC FT VQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSE FT LVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENM FT EPSPTGDFYPSPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFP FT QHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTL FT KNYVPSYDPSSPQTSQPNGSGQVVGKVPGHFTPVLAPSPHPSAVRPVTLSMTDTKPITT FT STEAYTASGTSQANRYVGLSPRDPSFLHQQQSWYLG" FT mRNA complement(join(14305752..14306017,14306988..14307519, FT 14313481..14313956)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-006" FT /product="nuclear factor I/B" FT /note="match: cDNAs: Em:U70862.1" FT CDS complement(join(14305977..14306017,14306988..14307519, FT 14313481..14313510)) FT /gene="NFIB" FT /locus_tag="RP11-280O24.2-006" FT /standard_name="OTTHUMP00000022770" FT /product="nuclear factor I/B" FT /protein_id="CAH73588.1" FT /translation="MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKH FT EKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCC FT VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALC FT VQPHHITVSVKELDLFLAYYVQEQGKNFFSSNKCIKI" FT misc_feature 14314083..14314176 FT /note="Single clone region. Sequence from reads from a FT short insert library derived from a single pUC clone. FT Restriction digest data confirm the assembly" FT misc_feature 14315166..14315308 FT /note="Single clone region. Sequence from reads from a FT short insert library derived from a single pUC clone. FT Restriction digest data confirm the assembly" FT mRNA join(14317084..14317344,AL137017.9:14035..14737) FT /locus_tag="RP11-120J1.1-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AL538961.1 Em:BM926339.1" FT misc_feature 14329654..14329709 FT /note="Single clone region. Sequence from reads from a FT short insert library derived from a single pUC clone. FT Restriction digest data confirm the assembly" FT misc_feature 14333979 FT /note="Clone_right_end: RP11-54D21" FT misc_feature 14343017 FT /note="Clone_left_end: RP11-120J1" FT misc_feature 14343217..14510701 FT /note="annotated region of clone" FT mRNA join(14347319..14347354,14357151..14357907) FT /locus_tag="RP11-120J1.1-002" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BI772180.1 Em:BI772318.1" FT misc_feature 14391854 FT /note="Clone_right_end: RP11-413C16" FT misc_feature 14429708 FT /note="Clone_left_end: RP11-408A13" FT mRNA join(AL136366.24:94150..94410,14357151..14357853) FT /locus_tag="RP11-120J1.1-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AL538961.1 Em:BM926339.1" FT misc_feature 14510601 FT /note="Clone_right_end: RP11-120J1" FT misc_feature 14510702..14596756 FT /note="annotated region of clone" FT CDS complement(14531914..14532040) FT /pseudo FT /locus_tag="RP11-408A13.2-001" FT /product="pseudogene similar to part of nuclear factor I/A FT NFIA" FT /note="match: proteins: Sw:Q02780 Tr:Q9QY90" FT unsure 14574902 FT /note="Tandem repeat" FT unsure 14574914 FT /note="Tandem repeat" FT CDS 14593575..14594181 FT /pseudo FT /locus_tag="RP11-408A13.1-001" FT /product="pseudogene similar to part of cell division cycle FT associated 4 CDCA4" FT /note="match: proteins: Sw:Q9BXL8 Sw:Q9CWM2" FT misc_feature 14596656 FT /note="Clone_right_end: RP11-408A13" FT misc_feature 14596757..14739902 FT /note="annotated region of clone" FT polyA_site complement(14615530) FT polyA_signal complement(14615547..14615552) FT mRNA complement(join(14737364..14737593,AL512643.9:2241..2330, FT AL512643.9:8449..8564,AL512643.9:9019..9147, FT AL512643.9:9360..9524,AL512643.9:9777..9824, FT AL512643.9:18470..18542,AL512643.9:21868..21997, FT AL512643.9:31820..31964,AL512643.9:32701..32902, FT AL512643.9:36161..36257)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-002" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: cDNAs: Em:AK058190.1" FT CDS complement(join(14737394..14737593,AL512643.9:2245..2330, FT AL512643.9:8449..8564,AL512643.9:9019..9147, FT AL512643.9:9360..9524,AL512643.9:9777..9824, FT AL512643.9:10497..10735,AL512643.9:12223..12372, FT AL512643.9:18470..18542,AL512643.9:21868..21997, FT AL512643.9:31820..31964,AL512643.9:32701..32902, FT AL512643.9:37885..38349)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-001" FT /standard_name="OTTHUMP00000021062" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: proteins: Sw:Q5H8C1" FT /protein_id="CAH73848.1" FT /translation="MVTQESMLKAALPLFTRFIISNGLRTEHGVFEITLETVDRALPVV FT TRNKGLRLAQGAVGLLSPDLLQLTDPDTPAENLTFLLVQLPQHGQLYLWGTGLLQHNFT FT QQDVDSKNVAYRHSGGDSQTDCFTFMATDGTNQGFIVNGRVWEEPVLFTIQVDQLDKTA FT PRITLLHSPSQVGLLKNGCYGIYITSRVLKASDPDTEDDQIIFKILQGPKHGHLENTTT FT GEFIHEKFSQKDLNSKTILYIINPSLEVNSDTVEFQIMDPTGNSATPQILELKWSHIEW FT SQTEYEVCENVGLLPLEIIRRGYSMDSAFVGIKVNQVSAAVGKDFTVIPSKLIQFDPGM FT STKMWNIAITYDGLEEDDEVFEVILNSPVNAVLGTKTKAAVKILDSKGGQCHPSYSSNQ FT SKHSTWEKGIWHLLPPGSSSSTTSGSFHLERRPLPSSMQLAVIRGDTLRGFDSTDLSQR FT KLRTRGNGKTVRPSSVYRNGTDIIYNYHGIVSLKLEDDSFPTHKRKAKVSIISQPQKTI FT KVAELPQADKVESTTDSHFPRQDQLPSFPKNCTLELKGLFHFEEGIQKLYQCNGIAWKA FT WSPQTKDVEDKSCPAGWHQHSGYCHILITEQKGTWNAAAQACREQYLGNLVTVFSRQHM FT RWLWDIGGRKSFWIGLNDQVHAGHWEWIGGEPVAFTNGRRGPSQRSKLGKSCVLVQRQG FT KWQTKDCRRAKPHNYVCSRKL" FT mRNA complement(join(14737150..14737593,AL512643.9:2245..2330, FT AL512643.9:8449..8564,AL512643.9:9019..9147, FT AL512643.9:9360..9524,AL512643.9:9777..9824, FT AL512643.9:10497..10735,AL512643.9:12223..12372, FT AL512643.9:18470..18542,AL512643.9:21868..21997, FT AL512643.9:31820..31964,AL512643.9:32701..32902, FT AL512643.9:37885..38352,AL512643.9:41544..41629)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-001" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: cDNAs: Em:BC031064.1" FT /note="match: ESTs: Em:AA463292.1 Em:AA683244.1 FT Em:AI453580.1 Em:AI628063.1 Em:AI767602.1 Em:AI824037.1 FT Em:AL045520.1 Em:AL599598.1 Em:AW237665.1 Em:AW875289.1 FT Em:BI461171.1 Em:BI767662.1 Em:BI827115.1 Em:BM256080.1 FT Em:W07288.1" FT CDS complement(join(14618964..14619096,14619637..14619680, FT 14639894..14640010,14658747..14658885,14662213..14662324, FT 14672828..14672926,14674185..14674338)) FT /gene="ZDHHC21" FT /locus_tag="RP11-439N12.2-001" FT /standard_name="OTTHUMP00000021060" FT /product="zinc finger, DHHC-type containing 21" FT /note="match: proteins: Sw:Q9D270" FT /protein_id="CAH73849.1" FT /translation="MGLRIHFVVDPHGWCCMGLIVFVWLYNIVLIPKIVLFPHYEEGHI FT PGILIIIFYGISIFCLVALVRASITDPGRLPENPKIPHGEREFWELCNKCNLMRPKRSH FT HCSRCGHCVRRMDHHCPWINNCVGEDNHWLFLQLCFYTELLTCYALMFSFCHYYYFLPL FT KKRNLDLFVFRHELAIMRLAAFMGITMLVGITGLFYTQLIGIITDTTSIEKMSNCCEDI FT SRPRKPWQQTFSEVFGTRWKILWFIPFRQRQPLRVPYHFANHV" FT mRNA complement(join(14615530..14619096,14619637..14619680, FT 14639894..14640010,14658747..14658885,14662213..14662324, FT 14672828..14672926,14674185..14674383,14680031..14680160, FT 14690335..14690383,14693227..14693469)) FT /gene="ZDHHC21" FT /locus_tag="RP11-439N12.2-001" FT /product="zinc finger, DHHC-type containing 21" FT /note="match: cDNAs: Em:AK020293.1 Em:AK096860.1" FT /note="match: ESTs: Em:AA635026.1 Em:AA778351.1 FT Em:AA789312.1 Em:AL539073.1 Em:AL596912.1 Em:AL597897.1 FT Em:AL700436.1 Em:AW663917.1 Em:AW874387.1 Em:BE720625.1 FT Em:BF184089.1 Em:BF979691.1 Em:BG564357.1 Em:BI913800.1 FT Em:BI916761.1 Em:BM463623.1 Em:BM721007.1 Em:BU055722.1" FT mRNA complement(join(14677364..14677470,14680031..14680160, FT 14683569..14683727,14690335..14690383,14693227..14693263)) FT /gene="ZDHHC21" FT /locus_tag="RP11-439N12.2-002" FT /product="zinc finger, DHHC-type containing 21" FT /note="match: ESTs: Em:AL699289.1" FT misc_feature 14708404 FT /note="Clone_left_end: RP11-265B7" FT mRNA complement(join(14719722..14720384,14722164..14722715)) FT /gene="CER1" FT /locus_tag="RP11-439N12.1-001" FT /product="cerberus 1, cysteine knot superfamily, homolog FT (Xenopus laevis)" FT /note="match: cDNAs: Em:AF035579.1 Em:AF400435.1" FT /note="match: ESTs: Em:AA866116.1 Em:BG383313.1 FT Em:BQ478475.1 Em:BU071467.1 Em:BU071563.1" FT CDS complement(join(14720088..14720384,14722164..14722670)) FT /gene="CER1" FT /locus_tag="RP11-439N12.1-001" FT /standard_name="OTTHUMP00000022757" FT /product="cerberus 1, cysteine knot superfamily, homolog FT (Xenopus laevis)" FT /note="match: proteins: Sw:O55233 Sw:O55233 Sw:O95813" FT /protein_id="CAH73850.1" FT /translation="MHLLLFQLLVLLPLGKTTRHQDGRQNQSSLSPVLLPRNQRELPTG FT NHEEAEEKPDLFVAVPHLVATSPAGEGQRQREKMLSRFGRFWKKPEREMHPSRDSDSEP FT FPPGTQSLIQPIDGMKMEKSPLREEAKKFWHHFMFRKTPASQGVILPIKSHEVHWETCR FT TVPFSQTITHEGCEKVVVQNNLCFGKCGSVHFPGAAQHSHTSCSHCLPAKFTTMHLPLN FT CTELSSVIKVVMLVEECQCKVKTEHEDGHILHAGSQDSFIPGVSA" FT polyA_site complement(14737150) FT polyA_signal complement(14737168..14737173) FT misc_feature 14739802 FT /note="Clone_right_end: RP11-439N12" FT misc_feature 14739903..14854708 FT /note="annotated region of clone" FT CDS complement(join(AL390732.10:140738..140937, FT 14740147..14740232,14746351..14746466,14746921..14747049, FT 14747262..14747426,14747679..14747726,14748399..14748637, FT 14750125..14750274,14756372..14756444,14759770..14759899, FT 14769722..14769866,14770603..14770804,14775787..14776201, FT 14784368..14784632,14788917..14789112,14792741..14792882, FT 14797496..14797640,14801650..14801872,14804954..14805150, FT 14806659..14806844,14807938..14808132,14812810..14813062, FT 14816776..14816869,14819232..14819440,14823158..14823325, FT 14824023..14824113,14824794..14824990,14841445..14841587, FT 14842314..14842658,14845958..14846089,14848663..14848771, FT 14851282..14851608,AL354672.27:4837..5039, FT AL354672.27:6473..6774,AL354672.27:11099..11193, FT AL354672.27:16034..16267)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-001" FT /standard_name="OTTHUMP00000207736" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: proteins: Sw:Q5H8C1.2" FT /protein_id="CAH71826.2" FT /translation="MNSLSWGAANAVLLLLLLAWASPTFISINRGVRVMKGHSAFLSGD FT DLKFAIPKEKDACKVEVVMNEPITQRVGKLTPQVFDCHFLPNEVKYVHNGCPILDEDTV FT KLRLYRFTERDTFIETFILWVYLLEPDCNIIHMSNNVLEVPEFNGLSQAIDKNLLRFDY FT DRMASLECTVSLDTARTRLPAHGQMVLGEPRPEEPRGDQPHSFFPESQLRAKLKCPGGS FT CTPGLKKIGSLKVSCEEFLLMGLRYQHLDPPSPNIDYISIQLDLTDTRSKIVYKVEKSE FT SAWLPVYIRAGIPNQIPKAAFMAVFILEVDQFILTSLTTSVLDCEEDETPKPLLVFNIT FT KAPLQGYVTHLLDHTRPISSFTWKDLSDMQIAYQPPNSSHSERRHDEVELEVYDFFFER FT SAPMTVHISIRTADTNAPRVSWNTGLSLLEGQSRAITWEQFQVVDNDDIGAVRLVTVGG FT LQHGWLTLRGGKGFLFTVADLQAGVVRYHHDDSDSTKDFVVFRIFDGHHSIRHKFPINV FT LPKDDSPPFLITNVVIELEEGQTILIQGSMLRASDVDASDDYIFFNITKPPQAGEIMKK FT PGPGLIGYPVHGFLQRDLFNGIIYYRHFGGEIFEDSFQFVLWDSHEPPNLSVPQVATIH FT ITPVDDQLPKEAPGVSRHLVVKETEVAYITKKQLHFIDSESYDRELVYTITTPPFFSFS FT HRHLDAGKLFMVDSIPKVVKNPTALELRSFTQHAVNYMKVAYMPPMQDIGPHCRDVQFT FT FSVSNQHGGTLHGICFNITILPVDNQVPEAFTNPLKVTEGGQSIISTEHILISDADTKL FT DNIDLSLRELPLHGRVELNGFPLNSGGTFSWGDLHTLKVRYQHDGTEVLQDDLLLEVTD FT GTNSAEFVLHVEVFPVNDEPPVLKADLMPVMNCSEGGEVVITSEYIFATDVDSDNLKLM FT FVIAREPQHGVVRRAGVTVDQFSQRDVISEAVTYKHTGGEIGLMPCFDTITLVVSDGEA FT GPFVNGCCYNGPNPSVPLHASFPVYDLNITVYPVDNQPPSIAIGPVFVVDEGCSTALTV FT NHLSATDPDTAADDLEFVLVSPPQFGYLENILPSVGFEKSNIGISIDSFQWKDMNAFHI FT NYVQSRHLRIEPTADQFTVYVTDGKHHSLEIPFSIIINPTNDEAPDFVVQNITVCEGQM FT KELDSSIISAVDLDIPQDALLFSITQKPRHGLLIDRGFSKDFSENKQPANPHQKHAPVH FT SFSMELLKTGMRLTYMHDDSESLADDFTIQLSDGKHKILKTISVEVIPVNDEKPMLSKK FT AEIAMNMGETRIISSAILSAIDEDSPREKIYYVFERLPQNGQLQLKIGRDWVPLSPGMK FT CTQEEVDLNLLRYTHTGAMDSQNQDSFTFYLWDGNNRSPALDCQITIKDMEKGDIVILT FT KPLVVSKGDRGFLTTTTLLAVDGTDKPEELLYVITSPPRYGQIEYVHYPGVPITNFSQM FT DVVGQTVCYVHKSKVTVSSDRFRFIISNGLRTEHGVFEITLETVDRALPVVTRNKGLRL FT AQGAVGLLSPDLLQLTDPDTPAENLTFLLVQLPQHGQLYLWGTGLLQHNFTQQDVDSKN FT VAYRHSGGDSQTDCFTFMATDGTNQGFIVNGRVWEEPVLFTIQVDQLDKTAPRITLLHS FT PSQVGLLKNGCYGIYITSRVLKASDPDTEDDQIIFKILQGPKHGHLENTTTGEFIHEKF FT SQKDLNSKTILYIINPSLEVNSDTVEFQIMDPTGNSATPQILELKWSHIEWSQTEYEVC FT ENVGLLPLEIIRRGYSMDSAFVGIKVNQVSAAVGKDFTVIPSKLIQFDPGMSTKMWNIA FT ITYDGLEEDDEVFEVILNSPVNAVLGTKTKAAVKILDSKGGQCHPSYSSNQSKHSTWEK FT GIWHLLPPGSSSSTTSGSFHLERRPLPSSMQLAVIRGDTLRGFDSTDLSQRKLRTRGNG FT KTVRPSSVYRNGTDIIYNYHGIVSLKLEDDSFPTHKRKAKVSIISQPQKTIKVAELPQA FT DKVESTTDSHFPRQDQLPSFPKNCTLELKGLFHFEEGIQKLYQCNGIAWKAWSPQTKDV FT EDKSCPAGWHQHSGYCHILITEQKGTWNAAAQACREQYLGNLVTVFSRQHMRWLWDIGG FT RKSFWIGLNDQVHAGHWEWIGGEPVAFTNGRRGPSQRSKLGKSCVLVQRQGKWQTKDCR FT RAKPHNYVCSRKL" FT mRNA complement(join(AL390732.10:140708..140937, FT 14740147..14740232,14746351..14746466,14746921..14747049, FT 14747262..14747426,14747679..14747726,14756372..14756444, FT 14759770..14759899,14769722..14769866,14770603..14770804, FT 14774063..14774159)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-006" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: cDNAs: Em:AK058190.1" FT mRNA complement(join(14751703..14751850,14756372..14756444, FT 14759770..14759899,14769722..14769866,14770603..14770804, FT 14775787..14775903)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-010" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: ESTs: Em:CD358093.1" FT CDS complement(join(AL390732.10:140738..140937, FT 14740147..14740232,14746351..14746466,14746921..14747049, FT 14747262..14747426,14747679..14747726,14748399..14748637, FT 14750125..14750274,14756372..14756444,14759770..14759899, FT 14769722..14769866,14770603..14770804,14775787..14776251)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-002" FT /standard_name="OTTHUMP00000021062" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: proteins: Sw:Q5H8C1" FT /protein_id="CAX15052.1" FT /translation="MVTQESMLKAALPLFTRFIISNGLRTEHGVFEITLETVDRALPVV FT TRNKGLRLAQGAVGLLSPDLLQLTDPDTPAENLTFLLVQLPQHGQLYLWGTGLLQHNFT FT QQDVDSKNVAYRHSGGDSQTDCFTFMATDGTNQGFIVNGRVWEEPVLFTIQVDQLDKTA FT PRITLLHSPSQVGLLKNGCYGIYITSRVLKASDPDTEDDQIIFKILQGPKHGHLENTTT FT GEFIHEKFSQKDLNSKTILYIINPSLEVNSDTVEFQIMDPTGNSATPQILELKWSHIEW FT SQTEYEVCENVGLLPLEIIRRGYSMDSAFVGIKVNQVSAAVGKDFTVIPSKLIQFDPGM FT STKMWNIAITYDGLEEDDEVFEVILNSPVNAVLGTKTKAAVKILDSKGGQCHPSYSSNQ FT SKHSTWEKGIWHLLPPGSSSSTTSGSFHLERRPLPSSMQLAVIRGDTLRGFDSTDLSQR FT KLRTRGNGKTVRPSSVYRNGTDIIYNYHGIVSLKLEDDSFPTHKRKAKVSIISQPQKTI FT KVAELPQADKVESTTDSHFPRQDQLPSFPKNCTLELKGLFHFEEGIQKLYQCNGIAWKA FT WSPQTKDVEDKSCPAGWHQHSGYCHILITEQKGTWNAAAQACREQYLGNLVTVFSRQHM FT RWLWDIGGRKSFWIGLNDQVHAGHWEWIGGEPVAFTNGRRGPSQRSKLGKSCVLVQRQG FT KWQTKDCRRAKPHNYVCSRKL" FT mRNA complement(join(AL390732.10:140494..140937, FT 14740147..14740232,14746351..14746466,14746921..14747049, FT 14747262..14747426,14747679..14747726,14748399..14748637, FT 14750125..14750274,14756372..14756444,14759770..14759899, FT 14769722..14769866,14770603..14770804,14775787..14776254, FT 14779446..14779531)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-002" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: ESTs: Em:AA463292.1 Em:AA683244.1 FT Em:AI453580.1 Em:AI628063.1 Em:AI767602.1 Em:AI824037.1 FT Em:AL045520.1 Em:AL599598.1 Em:AW237665.1 Em:AW875289.1 FT Em:BI461171.1 Em:BI767662.1 Em:BI827115.1 Em:BM256080.1 FT Em:W07288.1" FT /note="match: cDNAs: Em:BC031064.1" FT mRNA complement(join(14775821..14776254,14784368..14784632)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-009" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: ESTs: Em:DR000966.1" FT mRNA complement(join(14775933..14776201,14784368..14784632, FT 14788917..14789064,14792741..14792799)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-007" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: ESTs: Em:CN425445.1" FT mRNA complement(join(14784270..14784632,14788917..14789112, FT 14792741..14792795)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-008" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: ESTs: Em:CA336600.1" FT mRNA complement(join(AL390732.10:140738..140937, FT 14740147..14740232,14746351..14746466,14746921..14747049, FT 14747262..14747426,14747679..14747726,14748399..14748637, FT 14750125..14750274,14756372..14756444,14759770..14759899, FT 14769722..14769866,14770603..14770804,14775787..14776201, FT 14784368..14784632,14788917..14789112,14792741..14792882, FT 14797496..14797640,14801650..14801872,14804954..14805150, FT 14806659..14806844,14807938..14808132,14812810..14813062, FT 14816776..14816869,14819232..14819440,14823158..14823325, FT 14824023..14824113,14824794..14824990,14841445..14841587, FT 14842314..14842658,14845958..14846089,14848663..14848771, FT 14851282..14851608,AL354672.27:4837..5039, FT AL354672.27:6473..6774,AL354672.27:11099..11193, FT AL354672.27:16034..16534,AL354672.27:57204..57720)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-001" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: cDNAs: Em:AB160987.1" FT /note="match: ESTs: Em:DB255935.1 Em:DN992860.1" FT mRNA complement(join(AL390732.10:140542..140937, FT 14740147..14740232,14746351..14746466,14746921..14747049, FT 14747262..14747426,14747679..14747726,14748399..14748637, FT 14750125..14750274,14792741..14792882,14797496..14797640, FT 14801650..14801872,14804954..14805150,14806659..14806844, FT 14807938..14808132,14812810..14813062,14816776..14816869, FT 14819232..14819440,14823158..14823325,14824023..14824113, FT 14824794..14824990,14841445..14841587,14842314..14842658, FT 14845958..14846089,14848663..14848771,14851282..14851608, FT AL354672.27:4837..5039,AL354672.27:6473..6774, FT AL354672.27:11099..11193,AL354672.27:16034..16534, FT AL354672.27:57204..57526,AL354672.27:58060..58285)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-005" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: cDNAs: Em:BX537574.1" FT mRNA complement(join(14784270..14784632,14788917..14789112, FT 14792741..14792882,14797496..14797640,14801648..14801680)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-004" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: ESTs: Em:BU703609.1 Em:CA336600.1" FT misc_feature 14812628 FT /note="Clone_left_end: RP11-476C9" FT misc_feature 14852708 FT /note="Clone_right_end: RP11-265B7" FT misc_feature 14854709..14917962 FT /note="annotated region of clone" FT CDS complement(join(AL390732.10:140738..140937, FT AL512643.9:2245..2330,AL512643.9:8449..8564, FT AL512643.9:9019..9147,AL512643.9:9360..9524, FT AL512643.9:9777..9824,AL512643.9:10497..10735, FT AL512643.9:12223..12372,AL512643.9:18470..18542, FT AL512643.9:21868..21997,AL512643.9:31820..31964, FT AL512643.9:32701..32902,AL512643.9:37885..38299, FT AL512643.9:46466..46730,AL512643.9:51015..51210, FT AL512643.9:54839..54980,AL512643.9:59594..59738, FT AL512643.9:63748..63970,AL512643.9:67052..67248, FT AL512643.9:68757..68942,AL512643.9:70036..70230, FT AL512643.9:74908..75160,AL512643.9:78874..78967, FT AL512643.9:81330..81538,AL512643.9:85256..85423, FT AL512643.9:86121..86211,AL512643.9:86892..87088, FT AL512643.9:103543..103685,AL512643.9:104412..104756, FT AL512643.9:108056..108187,AL512643.9:110761..110869, FT AL512643.9:113380..113706,14857545..14857747, FT 14859181..14859482,14863807..14863901,14868742..14868975)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-001" FT /standard_name="OTTHUMP00000207736" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: proteins: Sw:Q5H8C1.2" FT /protein_id="CAX14920.1" FT /translation="MNSLSWGAANAVLLLLLLAWASPTFISINRGVRVMKGHSAFLSGD FT DLKFAIPKEKDACKVEVVMNEPITQRVGKLTPQVFDCHFLPNEVKYVHNGCPILDEDTV FT KLRLYRFTERDTFIETFILWVYLLEPDCNIIHMSNNVLEVPEFNGLSQAIDKNLLRFDY FT DRMASLECTVSLDTARTRLPAHGQMVLGEPRPEEPRGDQPHSFFPESQLRAKLKCPGGS FT CTPGLKKIGSLKVSCEEFLLMGLRYQHLDPPSPNIDYISIQLDLTDTRSKIVYKVEKSE FT SAWLPVYIRAGIPNQIPKAAFMAVFILEVDQFILTSLTTSVLDCEEDETPKPLLVFNIT FT KAPLQGYVTHLLDHTRPISSFTWKDLSDMQIAYQPPNSSHSERRHDEVELEVYDFFFER FT SAPMTVHISIRTADTNAPRVSWNTGLSLLEGQSRAITWEQFQVVDNDDIGAVRLVTVGG FT LQHGWLTLRGGKGFLFTVADLQAGVVRYHHDDSDSTKDFVVFRIFDGHHSIRHKFPINV FT LPKDDSPPFLITNVVIELEEGQTILIQGSMLRASDVDASDDYIFFNITKPPQAGEIMKK FT PGPGLIGYPVHGFLQRDLFNGIIYYRHFGGEIFEDSFQFVLWDSHEPPNLSVPQVATIH FT ITPVDDQLPKEAPGVSRHLVVKETEVAYITKKQLHFIDSESYDRELVYTITTPPFFSFS FT HRHLDAGKLFMVDSIPKVVKNPTALELRSFTQHAVNYMKVAYMPPMQDIGPHCRDVQFT FT FSVSNQHGGTLHGICFNITILPVDNQVPEAFTNPLKVTEGGQSIISTEHILISDADTKL FT DNIDLSLRELPLHGRVELNGFPLNSGGTFSWGDLHTLKVRYQHDGTEVLQDDLLLEVTD FT GTNSAEFVLHVEVFPVNDEPPVLKADLMPVMNCSEGGEVVITSEYIFATDVDSDNLKLM FT FVIAREPQHGVVRRAGVTVDQFSQRDVISEAVTYKHTGGEIGLMPCFDTITLVVSDGEA FT GPFVNGCCYNGPNPSVPLHASFPVYDLNITVYPVDNQPPSIAIGPVFVVDEGCSTALTV FT NHLSATDPDTAADDLEFVLVSPPQFGYLENILPSVGFEKSNIGISIDSFQWKDMNAFHI FT NYVQSRHLRIEPTADQFTVYVTDGKHHSLEIPFSIIINPTNDEAPDFVVQNITVCEGQM FT KELDSSIISAVDLDIPQDALLFSITQKPRHGLLIDRGFSKDFSENKQPANPHQKHAPVH FT SFSMELLKTGMRLTYMHDDSESLADDFTIQLSDGKHKILKTISVEVIPVNDEKPMLSKK FT AEIAMNMGETRIISSAILSAIDEDSPREKIYYVFERLPQNGQLQLKIGRDWVPLSPGMK FT CTQEEVDLNLLRYTHTGAMDSQNQDSFTFYLWDGNNRSPALDCQITIKDMEKGDIVILT FT KPLVVSKGDRGFLTTTTLLAVDGTDKPEELLYVITSPPRYGQIEYVHYPGVPITNFSQM FT DVVGQTVCYVHKSKVTVSSDRFRFIISNGLRTEHGVFEITLETVDRALPVVTRNKGLRL FT AQGAVGLLSPDLLQLTDPDTPAENLTFLLVQLPQHGQLYLWGTGLLQHNFTQQDVDSKN FT VAYRHSGGDSQTDCFTFMATDGTNQGFIVNGRVWEEPVLFTIQVDQLDKTAPRITLLHS FT PSQVGLLKNGCYGIYITSRVLKASDPDTEDDQIIFKILQGPKHGHLENTTTGEFIHEKF FT SQKDLNSKTILYIINPSLEVNSDTVEFQIMDPTGNSATPQILELKWSHIEWSQTEYEVC FT ENVGLLPLEIIRRGYSMDSAFVGIKVNQVSAAVGKDFTVIPSKLIQFDPGMSTKMWNIA FT ITYDGLEEDDEVFEVILNSPVNAVLGTKTKAAVKILDSKGGQCHPSYSSNQSKHSTWEK FT GIWHLLPPGSSSSTTSGSFHLERRPLPSSMQLAVIRGDTLRGFDSTDLSQRKLRTRGNG FT KTVRPSSVYRNGTDIIYNYHGIVSLKLEDDSFPTHKRKAKVSIISQPQKTIKVAELPQA FT DKVESTTDSHFPRQDQLPSFPKNCTLELKGLFHFEEGIQKLYQCNGIAWKAWSPQTKDV FT EDKSCPAGWHQHSGYCHILITEQKGTWNAAAQACREQYLGNLVTVFSRQHMRWLWDIGG FT RKSFWIGLNDQVHAGHWEWIGGEPVAFTNGRRGPSQRSKLGKSCVLVQRQGKWQTKDCR FT RAKPHNYVCSRKL" FT mRNA complement(join(AL390732.10:140738..140937, FT AL512643.9:2245..2330,AL512643.9:8449..8564, FT AL512643.9:9019..9147,AL512643.9:9360..9524, FT AL512643.9:9777..9824,AL512643.9:10497..10735, FT AL512643.9:12223..12372,AL512643.9:18470..18542, FT AL512643.9:21868..21997,AL512643.9:31820..31964, FT AL512643.9:32701..32902,AL512643.9:37885..38299, FT AL512643.9:46466..46730,AL512643.9:51015..51210, FT AL512643.9:54839..54980,AL512643.9:59594..59738, FT AL512643.9:63748..63970,AL512643.9:67052..67248, FT AL512643.9:68757..68942,AL512643.9:70036..70230, FT AL512643.9:74908..75160,AL512643.9:78874..78967, FT AL512643.9:81330..81538,AL512643.9:85256..85423, FT AL512643.9:86121..86211,AL512643.9:86892..87088, FT AL512643.9:103543..103685,AL512643.9:104412..104756, FT AL512643.9:108056..108187,AL512643.9:110761..110869, FT AL512643.9:113380..113706,14857545..14857747, FT 14859181..14859482,14863807..14863901,14868742..14869242, FT 14909912..14910428)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-001" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: cDNAs: Em:AB160987.1" FT /note="match: ESTs: Em:DB255935.1 Em:DN992860.1" FT mRNA complement(join(AL390732.10:140542..140937, FT AL512643.9:2245..2330,AL512643.9:8449..8564, FT AL512643.9:9019..9147,AL512643.9:9360..9524, FT AL512643.9:9777..9824,AL512643.9:10497..10735, FT AL512643.9:12223..12372,AL512643.9:54839..54980, FT AL512643.9:59594..59738,AL512643.9:63748..63970, FT AL512643.9:67052..67248,AL512643.9:68757..68942, FT AL512643.9:70036..70230,AL512643.9:74908..75160, FT AL512643.9:78874..78967,AL512643.9:81330..81538, FT AL512643.9:85256..85423,AL512643.9:86121..86211, FT AL512643.9:86892..87088,AL512643.9:103543..103685, FT AL512643.9:104412..104756,AL512643.9:108056..108187, FT AL512643.9:110761..110869,AL512643.9:113380..113706, FT 14857545..14857747,14859181..14859482,14863807..14863901, FT 14868742..14869242,14909912..14910234,14910768..14910993)) FT /gene="FREM1" FT /locus_tag="RP11-439N12.3-005" FT /product="FRAS1 related extracellular matrix 1" FT /note="match: cDNAs: Em:BX537574.1" FT misc_feature 14913963 FT /note="Clone_left_end: RP11-54D18" FT misc_feature 14917963..15073536 FT /note="annotated region of clone" FT polyA_signal complement(14920776..14920781) FT CDS complement(14921341..14922328) FT /pseudo FT /locus_tag="RP11-54D18.1-001" FT /product="lactate dehdrogenase A (LDHA) pseudogene" FT /note="match: proteins: Sw:P00338 Sw:P00339 Sw:P00340 FT Sw:P00341 Sw:P04642 Sw:P06151 Sw:P13491 Sw:P19858 Sw:P79913 FT Sw:Q29563 Sw:Q9BE24 Sw:Q9PW07 Sw:Q9TSX5 Sw:Q9W7L3 Sw:Q9W7L5 FT Sw:Q9W7M6 Sw:Q9XT87 Sw:Q9YI05 Tr:Q99K20 Tr:Q9W5Z7 FT Tr:Q9W7M7" FT misc_feature 14984457 FT /note="Clone_right_end: RP11-476C9" FT CDS join(14993310..14993395,14997162..14997321, FT 15000354..15000539,15001632..15001730,15007730..15007880, FT 15011674..15011761,15017353..15017525,15019483..15019727) FT /pseudo FT /locus_tag="RP11-54D18.2-001" FT /product="novel pseudogene" FT /note="match: proteins: Tr:Q9NWY4" FT misc_feature 15024056 FT /note="Clone_left_end: RP11-271D19" FT CDS complement(join(15034178..15034724,15035789..15035975, FT 15040709..15040817,15047903..15048059)) FT /pseudo FT /locus_tag="RP11-54D18.3-001" FT /product="pseudogene similar to part of chloride channel 3 FT CLCN3" FT /note="match: proteins: Sw:O18894 Sw:P51790 Sw:P51790 FT Sw:Q9R279 Tr:O13080 Tr:P97274 Tr:Q8K4W8 Tr:Q8K4W9 Tr:Q8K4X0 FT Tr:Q8K4X0 Tr:Q8K4X1 Tr:Q9PUI6 Tr:Q9R287 Tr:Q9YH11" FT misc_feature 15048131..15048143 FT /note="Sequence from uni-directional dGTP big dye FT terminator reads only" FT CDS 15055054..15056032 FT /pseudo FT /locus_tag="RP11-54D18.4-001" FT /note="match: proteins: Sw:O75475 Sw:O75475 Sw:O75475 FT Sw:O75475 Sw:O75475 Sw:Q8MJG1 Sw:Q99JF8 Sw:Q99JF8" FT misc_feature 15071536 FT /note="Clone_right_end: RP11-54D18" FT misc_feature 15124772 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 1900bp by restriction digest data" FT misc_feature 15133328 FT /note="Clone_left_end: RP11-224J22" FT misc_feature 15137328..15310238 FT /note="annotated region of clone" FT polyA_site complement(15171562) FT polyA_signal complement(15171579..15171584) FT CDS complement(join(15172017..15172107,15175017..15175133, FT 15177695..15177812,15182305..15182413,15185278..15185442)) FT /gene="TTC39B" FT /locus_tag="RP11-224J22.1-003" FT /standard_name="OTTHUMP00000021067" FT /product="tetratricopeptide repeat domain 39B" FT /protein_id="CAH71479.1" FT /translation="MTFLWGWAGVLHRQVDSLKQRIAGKSIPTEKFAVRKARRYSASLP FT APVKLILPALEMMYVWNGFSIVSKRKDLSENLLVTVEKAEAALQSQNFNSFSVDDECLV FT KLLKGCCLKNLQRPLQAELCYNHVVESEKLLKYDHYLVPFTLFELASLYKSQGEIDKAI FT KFLETARNNYKDYSLESRLHFRIQAALHLWRKPSSD" FT mRNA complement(join(15171562..15172107,15175017..15175133, FT 15177695..15177812,15182305..15182413,15185278..15185526, FT 15186942..15187033,15187969..15188063)) FT /gene="TTC39B" FT /locus_tag="RP11-224J22.1-003" FT /product="tetratricopeptide repeat domain 39B" FT /note="match: ESTs: Em:BE183140.1 Em:BI909163.1" FT /note="match: cDNAs: Em:BC038592.1" FT misc_feature 15192272 FT /note="Clone_right_end: RP11-271D19" FT misc_feature 15227937 FT /note="Clone_left_end: RP11-490C5" FT misc_feature 15255791..15255795 FT /note="Single clone region. Sequence from reads from a FT short insert library derived from a single pUC clone. FT Restriction digest data confirm the assembly" FT mRNA complement(join(15171910..15172107,15175017..15175133, FT 15177695..15177812,15182305..15182413,15183270..15183454, FT 15185278..15185404,15186942..15187033,15187969..15188130, FT 15189572..15189631,15189723..15189790,15190552..15190660, FT 15191188..15191253,15192588..15192693,15199859..15199923, FT 15203821..15203888,15210086..15210162,15211264..15211395, FT 15214137..15214247,15225915..15226010,15267912..15267946, FT 15293801..15294086)) FT /gene="TTC39B" FT /locus_tag="RP11-224J22.1-002" FT /product="tetratricopeptide repeat domain 39B" FT /note="match: cDNAs: Em:AB071091.1" FT mRNA complement(join(15171561..15172107,15175017..15175133, FT 15177695..15177812,15182305..15182413,15185278..15185404, FT 15186942..15187033,15187969..15188130,15189572..15189631, FT 15189723..15189790,15190552..15190660,15191188..15191253, FT 15192588..15192693,15199859..15199923,15203821..15203888, FT 15210086..15210162,15211264..15211395,15214137..15214247, FT 15225915..15226010,15267912..15267946,15307082..15307244)) FT /gene="TTC39B" FT /locus_tag="RP11-224J22.1-001" FT /product="tetratricopeptide repeat domain 39B" FT /note="match: ESTs: Em:AA398910.1 Em:AA517162.1 FT Em:AA620302.1 Em:AI653293.1 Em:BB150889.2 Em:BF056282.1 FT Em:BF605246.1 Em:BG669165.1 Em:BI562431.1 Em:BI827065.1 FT Em:BM052771.1 Em:BM053065.1 Em:Z24976.1" FT /note="match: cDNAs: Em:AK091187.1" FT CDS complement(join(15172017..15172107,15175017..15175133, FT 15177695..15177812,15182305..15182413,15185278..15185404, FT 15186942..15187033,15187969..15188130,15189572..15189631, FT 15189723..15189790,15190552..15190660,15191188..15191253, FT 15192588..15192693,15199859..15199923,15203821..15203888, FT 15210086..15210162,15211264..15211395,15214137..15214247, FT 15225915..15226010,15267912..15267946,15307082..15307123)) FT /gene="TTC39B" FT /locus_tag="RP11-224J22.1-001" FT /standard_name="OTTHUMP00000021065" FT /product="tetratricopeptide repeat domain 39B" FT /note="match: proteins: Tr:Q8N267 Tr:Q9D8N8" FT /protein_id="CAH71481.1" FT /translation="MALLGSRAELEADEDVFEDALETISISSHSDMATSSLHFASCDTQ FT QAPRQRGASTVSSSSSTKVDLKSGLEECAVALNLFLSNKFTDALELLRPWAKESMYHAL FT GYSTIVVLQAVLTFEQQDIQNGISAMKDALQTCQKYRKKYTVVESFSSLLSRGSLEQLS FT EEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKECLSILHEIQKNK FT LQQEFFYEFEGGVKLGSGAFNLMLSLLPARIIRLLEFIGFSGNRELGLLQLREGASGRS FT MRSALCCLTILAFHTYISLILGTGEVNVAEAERLLAPFLQQFPNGSLVLFYHARIELLK FT GNLEEAQEVFQKCISVQEEWKQFHHLCYWELMWINVFQQNWMQAYYYSDLLCKESKWSK FT ATYVFLKAAILSMLPEEDVVATNENVVTLFRQVDSLKQRIAGKSIPTEKFAVRKARRYS FT ASLPAPVKLILPALEMMYVWNGFSIVSKRKDLSENLLVTVEKAEAALQSQNFNSFSVDD FT ECLVKLLKGCCLKNLQRPLQAELCYNHVVESEKLLKYDHYLVPFTLFELASLYKSQGEI FT DKAIKFLETARNNYKDYSLESRLHFRIQAALHLWRKPSSD" FT misc_feature 15308238 FT /note="Clone_right_end: RP11-224J22" FT misc_feature 15310239..15409992 FT /note="annotated region of clone" FT CDS 15361391..15362132 FT /pseudo FT /locus_tag="RP11-490C5.1-001" FT /product="ribosomal protein L7 (RPL7) pseudogene" FT /note="match: proteins: Sw:P05426 Sw:P14148 Sw:P14148 FT Sw:P18124 Sw:P18124 Sw:P18124 Sw:Q9LHP1 Tr:O95036 Tr:Q15289 FT Tr:Q8WQI8 Tr:Q90YW3 Tr:Q9DG69" FT polyA_signal 15362175..15362180 FT misc_feature 15409993..15466627 FT /note="annotated region of clone" FT misc_feature 15411992 FT /note="Clone_right_end: RP11-490C5" FT mRNA join(15422702..15423191,15423907..15423984, FT 15433550..15433634,15444600..15444704,15447093..15447242, FT 15451318..15451400,15453039..15453203,15457958..15458065, FT 15459717..15464132) FT /gene="SNAPC3" FT /locus_tag="RP11-307K19.1-002" FT /product="small nuclear RNA activating complex, polypeptide FT 3, 50kDa" FT /note="match: cDNAs: Em:AK007563.1 Em:AK010932.1 FT Em:AK016168.1 Em:AK019863.1 Em:U71300.1" FT /note="match: ESTs: Em:AA033512.1 Em:AA149136.1 FT Em:AA384206.1 Em:AA446555.1 Em:AA838141.1 Em:AI215615.1 FT Em:AI243714.1 Em:AI671164.1 Em:AV593173.1 Em:AW383211.1 FT Em:AW383264.1 Em:AW581931.1 Em:AW581948.1 Em:AW866986.1 FT Em:AW961570.1 Em:BE149596.1 Em:BE870891.1 Em:BG718791.1 FT Em:BG722909.1 Em:BG772830.1 Em:BI459127.1 Em:BI461190.1 FT Em:BM286297.1 Em:BQ004139.1 Em:BQ417138.1 Em:BU078591.1 FT Em:H39844.1 Em:H69160.1 Em:N75869.1 Em:R20243.1 FT Em:R59277.1" FT mRNA join(15422732..15423191,15423907..15423984, FT 15433550..15433634,15444600..15444704,15447093..15447242, FT 15451318..15451400,15453039..15453203,15457958..15458065, FT 15459717..15460311,15461629..15461803,15462863..15462988, FT 15465508..15465951) FT /gene="SNAPC3" FT /locus_tag="RP11-307K19.1-001" FT /product="small nuclear RNA activating complex, polypeptide FT 3, 50kDa" FT /note="match: cDNAs: Em:BC036031.1" FT /note="match: ESTs: Em:AA393305.1 Em:AA771975.1 FT Em:AA992385.1 Em:AI066599.1 Em:BE702552.1 Em:BM703459.1 FT Em:BU623481.1 Em:R45016.1" FT mRNA join(15422867..15423191,15423907..15423984, FT 15433550..15433634,15444600..15444704,15447093..15447242, FT 15451318..15451400,15453039..15453203,15457958..15458065, FT 15459717..15460311,15461629..15462458) FT /gene="SNAPC3" FT /locus_tag="RP11-307K19.1-003" FT /product="small nuclear RNA activating complex, polypeptide FT 3, 50kDa" FT /note="match: cDNAs: Em:BC014985.1 Em:U66413.1" FT /note="match: ESTs: Em:AA043335.1 Em:AA829743.1 FT Em:AW900721.1 Em:AW960275.1 Em:BE179963.1 Em:BG249089.1 FT Em:BM511679.1 Em:BM730022.1 Em:BM831846.1 Em:BQ086252.1 FT Em:BQ086321.1 Em:BQ430818.1" FT mRNA join(15422877..15423191,15423907..15423984, FT 15433550..15433634,15444600..15444704,15451318..15451400, FT 15453039..>15453102) FT /gene="SNAPC3" FT /locus_tag="RP11-307K19.1-006" FT /product="small nuclear RNA activating complex, polypeptide FT 3, 50kDa" FT /note="match: ESTs: Em:BI549828.1" FT CDS join(15422878..15423191,15423907..15423984, FT 15433550..15433634,15444600..15444704,15451318..15451400, FT 15453039..>15453102) FT /gene="SNAPC3" FT /locus_tag="RP11-307K19.1-006" FT /standard_name="OTTHUMP00000021072" FT /product="small nuclear RNA activating complex, polypeptide FT 3, 50kDa" FT /protein_id="CAI13284.1" FT /translation="MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVG FT AFGELWRGRLRGAGDLSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVC FT GLDKLKCLEDGEDPEVIPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHA FT IGKKPENSADMIEEGELILSVNILYPVIFHKDLYKSAFFYFEGTFYNDKRYPECRDLSR FT TIIEWSESHDRGYGKFQTARM" FT CDS join(15422878..15423191,15423907..15423984, FT 15433550..15433634,15444600..15444704,15447093..15447242, FT 15451318..15451400,15453039..15453203,15457958..15458065, FT 15459717..15459864) FT /gene="SNAPC3" FT /locus_tag="RP11-307K19.1-002" FT /standard_name="OTTHUMP00000021069" FT /product="small nuclear RNA activating complex, polypeptide FT 3, 50kDa" FT /note="match: proteins: Sw:Q92966 Sw:Q9D2C9" FT /protein_id="CAI13285.1" FT /translation="MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVG FT AFGELWRGRLRGAGDLSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVC FT GLDKLKCLEDGEDPEVIPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHA FT IGKKPENSADMIEEGELILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCV FT SDLQIGGEFSNTPDQAPEHISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESH FT DRGYGKFQTARMEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLY FT PLLIKKHWLWTRKCFVCKMYTARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEF FT LAYPYVDPGTFN" FT mRNA join(15423140..15423191,15423907..15423984, FT 15433550..15433822) FT /gene="SNAPC3" FT /locus_tag="RP11-307K19.1-004" FT /product="small nuclear RNA activating complex, polypeptide FT 3, 50kDa" FT /note="match: ESTs: Em:BE159041.1" FT mRNA join(15447110..15447242,15451318..15451400, FT 15453039..15453575) FT /gene="SNAPC3" FT /locus_tag="RP11-307K19.1-005" FT /product="small nuclear RNA activating complex, polypeptide FT 3, 50kDa" FT /note="match: ESTs: Em:BU852090.1" FT CDS join(15447120..15447242,15451318..15451400, FT 15453039..15453207) FT /gene="SNAPC3" FT /locus_tag="RP11-307K19.1-005" FT /standard_name="OTTHUMP00000021071" FT /product="small nuclear RNA activating complex, polypeptide FT 3, 50kDa" FT /protein_id="CAI13286.1" FT /translation="MLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPEHISKDLYK FT SAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFNDLCIKLGF FT PYLYCHQGDCEHVIVITDIR" FT polyA_site complement(15464064) FT polyA_signal complement(15464080..15464085) FT polyA_signal 15465928..15465933 FT polyA_site 15465951 FT misc_feature 15466627 FT /note="Clone_right_end: RP11-307K19" FT mRNA join(AL513423.3:125383..125585,AL513423.3:126073..126285, FT AL513423.3:129765..129841,AL513423.3:146278..146416, FT AL513423.3:149471..149575,AL513423.3:150334..150396, FT AL513423.3:156715..156811,AL513423.3:157850..157925, FT AL513423.3:162165..162393,AL513423.3:163652..163770, FT AL513423.3:166409..166464,AL513423.3:167066..167136, FT AL513423.3:167344..167445,AL513423.3:167559..167772, FT complement(AL359998.21:2119..2230), FT complement(15464064..15465578)) FT /gene="PSIP1" FT /locus_tag="RP11-307K19.2-003" FT /product="PC4 and SFRS1 interacting protein 1" FT /note="match: cDNAs: Em:AF063020.1 Em:AF098483.1 FT Em:BC022971.1 Em:U94319.1" FT /note="match: ESTs: Em:AI375636.1 Em:AI583920.1 FT Em:AL044645.1 Em:AL046720.1 Em:AL574202.1 Em:AU119069.1 FT Em:AU120067.1 Em:AU132459.1 Em:AV755689.1 Em:AW009494.1 FT Em:BE348945.1 Em:BE886403.1 Em:BE886591.1 Em:BF033149.1 FT Em:BF230129.1 Em:BG819185.1 Em:BI042617.1 Em:BI492975.1 FT Em:BI547490.1 Em:BM473778.1 Em:BM557625.1 Em:BQ009675.1 FT Em:BQ434201.1 Em:BQ436584.1 Em:BQ439671.1 Em:BQ921668.1 FT Em:BQ934260.1 Em:BQ949530.1" FT mRNA join(AL513423.3:125407..125585,AL513423.3:126076..126285, FT AL513423.3:129765..129841,AL513423.3:146278..146416, FT AL513423.3:149471..149575,AL513423.3:150334..150396, FT AL513423.3:156715..156811,AL513423.3:157850..157925, FT AL513423.3:162165..162393,AL513423.3:163652..163770, FT AL513423.3:166409..166464,AL513423.3:167066..167136, FT AL513423.3:167344..167445,AL513423.3:167559..167772, FT complement(AL359998.21:2119..2230), FT complement(15464064..15465578)) FT /gene="PSIP1" FT /locus_tag="RP11-307K19.2-004" FT /product="PC4 and SFRS1 interacting protein 1" FT /note="match: cDNAs: Em:AF339082.1 Em:AF432220.1 FT Em:BC043079.1 Em:U94319.1" FT /note="match: ESTs: Em:AI589965.1 Em:AL044645.1 FT Em:AL550291.1 Em:AU119069.1 Em:AU135465.1 Em:AV755689.1 FT Em:AW970117.1 Em:BE778401.1 Em:BF698273.1 Em:BF797572.1 FT Em:BG709187.1 Em:BI042617.1 Em:BI602110.1 Em:BM473778.1 FT Em:BM541771.1 Em:BM557625.1 Em:BQ439671.1 Em:BQ949530.1 FT Em:BQ957296.1 Em:BU177412.1 Em:BU429674.1 Em:BU683489.1 FT Em:BU684966.1 Em:F35590.1" FT CDS join(AL513423.3:126214..126285,AL513423.3:129765..129841, FT AL513423.3:146278..146416,AL513423.3:149471..149575, FT AL513423.3:150334..150396,AL513423.3:156715..156811, FT AL513423.3:157850..157925,AL513423.3:162165..162393, FT AL513423.3:163652..163770,AL513423.3:166409..166464, FT AL513423.3:167066..167136,AL513423.3:167344..167445, FT AL513423.3:167559..167772, FT complement(AL359998.21:2119..2230), FT complement(15465518..15465578)) FT /gene="PSIP1" FT /locus_tag="RP11-307K19.2-003" FT /standard_name="OTTHUMP00000022753" FT /product="PC4 and SFRS1 interacting protein 1" FT /note="match: proteins: Sw:O75475 Sw:O75475 Sw:O75475 FT Sw:Q812D1 Sw:Q8MJG1 Sw:Q8MJG1 Sw:Q99JF8 Sw:Q99JF8 Sw:Q99JF8 FT Sw:Q99JF8" FT /protein_id="CAI13287.1" FT /translation="MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFF FT GTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNA FT SSDVEVEEKETSVSKEDTDHEEKASNEDVTKAVDITTPKAARRGRKRKAEKQVETEEAG FT VVTTATASVNLKVSPKRGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQ FT EEKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDD FT QEGEKKRKGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEQQNKDEGKKPEVKKV FT EKKRETSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITT FT LKKIRRFKVSQVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNKSLAEQRQHEEANKTKD FT QGKKGPNKKLEKEQTGSKTLNGGSDAQDGNQPQHNGESNEDSKDNHEASTKKKPSSEER FT ETEISLKDSTLDN" FT misc_feature 15466628..15467864 FT /note="annotated region of clone" FT mRNA join(AL513423.3:125383..125585,AL513423.3:126073..126285, FT AL513423.3:129765..129841,AL513423.3:146278..146416, FT AL513423.3:149471..149575,AL513423.3:150334..150396, FT AL513423.3:156715..156811,AL513423.3:157850..157925, FT AL513423.3:162165..162393,AL513423.3:163652..163770, FT AL513423.3:166409..166464,AL513423.3:167066..167136, FT AL513423.3:167344..167445,AL513423.3:167559..167772, FT complement(15466746..15466857), FT complement(AL441925.16:54072..55586)) FT /gene="PSIP1" FT /locus_tag="RP11-307K19.2-003" FT /product="PC4 and SFRS1 interacting protein 1" FT /note="match: cDNAs: Em:AF063020.1 Em:AF098483.1 FT Em:BC022971.1 Em:U94319.1" FT /note="match: ESTs: Em:AI375636.1 Em:AI583920.1 FT Em:AL044645.1 Em:AL046720.1 Em:AL574202.1 Em:AU119069.1 FT Em:AU120067.1 Em:AU132459.1 Em:AV755689.1 Em:AW009494.1 FT Em:BE348945.1 Em:BE886403.1 Em:BE886591.1 Em:BF033149.1 FT Em:BF230129.1 Em:BG819185.1 Em:BI042617.1 Em:BI492975.1 FT Em:BI547490.1 Em:BM473778.1 Em:BM557625.1 Em:BQ009675.1 FT Em:BQ434201.1 Em:BQ436584.1 Em:BQ439671.1 Em:BQ921668.1 FT Em:BQ934260.1 Em:BQ949530.1" FT mRNA join(AL513423.3:125407..125585,AL513423.3:126076..126285, FT AL513423.3:129765..129841,AL513423.3:146278..146416, FT AL513423.3:149471..149575,AL513423.3:150334..150396, FT AL513423.3:156715..156811,AL513423.3:157850..157925, FT AL513423.3:162165..162393,AL513423.3:163652..163770, FT AL513423.3:166409..166464,AL513423.3:167066..167136, FT AL513423.3:167344..167445,AL513423.3:167559..167772, FT complement(15466746..15466857), FT complement(AL441925.16:54072..55586)) FT /gene="PSIP1" FT /locus_tag="RP11-307K19.2-004" FT /product="PC4 and SFRS1 interacting protein 1" FT /note="match: cDNAs: Em:AF339082.1 Em:AF432220.1 FT Em:BC043079.1 Em:U94319.1" FT /note="match: ESTs: Em:AI589965.1 Em:AL044645.1 FT Em:AL550291.1 Em:AU119069.1 Em:AU135465.1 Em:AV755689.1 FT Em:AW970117.1 Em:BE778401.1 Em:BF698273.1 Em:BF797572.1 FT Em:BG709187.1 Em:BI042617.1 Em:BI602110.1 Em:BM473778.1 FT Em:BM541771.1 Em:BM557625.1 Em:BQ439671.1 Em:BQ949530.1 FT Em:BQ957296.1 Em:BU177412.1 Em:BU429674.1 Em:BU683489.1 FT Em:BU684966.1 Em:F35590.1" FT CDS join(AL513423.3:126214..126285,AL513423.3:129765..129841, FT AL513423.3:146278..146416,AL513423.3:149471..149575, FT AL513423.3:150334..150396,AL513423.3:156715..156811, FT AL513423.3:157850..157925,AL513423.3:162165..162393, FT AL513423.3:163652..163770,AL513423.3:166409..166464, FT AL513423.3:167066..167136,AL513423.3:167344..167445, FT AL513423.3:167559..167772,complement(15466746..15466857), FT complement(AL441925.16:55526..55586)) FT /gene="PSIP1" FT /locus_tag="RP11-307K19.2-003" FT /standard_name="OTTHUMP00000022753" FT /product="PC4 and SFRS1 interacting protein 1" FT /note="match: proteins: Sw:O75475 Sw:O75475 Sw:O75475 FT Sw:Q812D1 Sw:Q8MJG1 Sw:Q8MJG1 Sw:Q99JF8 Sw:Q99JF8 Sw:Q99JF8 FT Sw:Q99JF8" FT /protein_id="CAH71355.1" FT /translation="MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFF FT GTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNA FT SSDVEVEEKETSVSKEDTDHEEKASNEDVTKAVDITTPKAARRGRKRKAEKQVETEEAG FT VVTTATASVNLKVSPKRGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQ FT EEKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDD FT QEGEKKRKGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEQQNKDEGKKPEVKKV FT EKKRETSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITT FT LKKIRRFKVSQVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNKSLAEQRQHEEANKTKD FT QGKKGPNKKLEKEQTGSKTLNGGSDAQDGNQPQHNGESNEDSKDNHEASTKKKPSSEER FT ETEISLKDSTLDN" FT misc_feature complement(15465865..15636399) FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon complement(15636223..15636271) FT /note="XPOUND prediction, score = 0.468" FT repeat_region complement(15636153..15636167) FT /note="AT repeat" FT repeat_region complement(15635985..15636032) FT /rpt_family="L1" FT /note="95% identity: matches 177..224 of consensus" FT repeat_region complement(15635377..15635388) FT /note="TA repeat" FT repeat_region complement(15634973..15635010) FT /rpt_type=INVERTED FT /note="IR1, 76% complementary to IR1' (2545..2582)" FT repeat_region complement(15634167..15634286) FT /rpt_family="atattatttttttattattt repeat" FT /rpt_type=TANDEM FT /note="homology = 66.7%, counts = 6" FT repeat_region 15629502..15634175 FT /rpt_family="L1" FT /note="94% identity: matches 1344..6024 of consensus" FT repeat_region complement(15633818..15633855) FT /rpt_type=INVERTED FT /note="IR1', 76% complementary to IR1 (1390..1427)" FT exon 15631921..15632835 FT /note="GENSCAN prediction, score = 20.66" FT exon 15632447..15632598 FT /note="MZEF prediction, score = 0.634" FT exon 15629338..15630084 FT /note="GENSCAN prediction, score = 35.33" FT repeat_region 15629120..15629425 FT /rpt_family="L1" FT /note="92% identity: matches 958..1267 of consensus" FT repeat_region 15628807..15629059 FT /rpt_family="L1" FT /note="88% identity: matches 1..253 of consensus" FT exon complement(15628804..15628921) FT /note="XPOUND prediction, score = 0.349" FT repeat_region 15628042..15628814 FT /rpt_family="L1" FT /note="93% identity: matches 7..776 of consensus" FT exon complement(15628306..15628436) FT /note="XPOUND prediction, score = 0.547" FT exon 15628060..15628113 FT /note="XPOUND prediction, score = 0.781" FT repeat_region complement(15624341..15627958) FT /rpt_family="L1" FT /note="92% identity: matches 2388..6006 of consensus" FT repeat_region complement(15627320..15627396) FT /rpt_family="aaaaagcaaga repeat" FT /rpt_type=TANDEM FT /note="homology = 70.1%, counts = 7" FT exon 15624384..15624397 FT /note="XPOUND prediction, score = 0.218" FT repeat_region complement(15623456..15623507) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 82.7%, counts = 26" FT repeat_region complement(15623474..15623505) FT /note="TG repeat" FT repeat_region complement(15623463..15623473) FT /note="CG repeat" FT exon 15623265..15623411 FT /note="MZEF prediction, score = 0.977" FT repeat_region 15621582..15622280 FT /rpt_family="L1" FT /note="82% identity: matches 399..1100 of consensus" FT repeat_region 15620982..15621255 FT /rpt_family="L1" FT /note="81% identity: matches 312..587 of consensus" FT repeat_region complement(15620982..15621253) FT /rpt_family="ALU" FT /note="84% identity: matches 11..281 of consensus" FT repeat_region complement(15620965..15620979) FT /note="AAAT repeat" FT exon 15620805..15620927 FT /note="MZEF prediction, score = 0.841" FT repeat_region 15620520..15620655 FT /rpt_family="MER37" FT /note="83% identity: matches 101..235 of consensus" FT repeat_region complement(15620489..15620567) FT /rpt_family="MER37" FT /note="84% identity: matches 11..84 of consensus" FT repeat_region 15619844..15619955 FT /rpt_family="MER37" FT /note="84% identity: matches 25..134 of consensus" FT exon 15619623..15619847 FT /note="MZEF prediction, score = 0.871" FT repeat_region 15619310..15619426 FT /rpt_family="MER37" FT /note="82% identity: matches 79..195 of consensus" FT repeat_region complement(15619315..15619366) FT /rpt_family="MER37" FT /note="94% identity: matches 429..480 of consensus" FT repeat_region complement(15619229..15619269) FT /rpt_family="MER37" FT /note="97% identity: matches 164..204 of consensus" FT exon complement(15619078..15619132) FT /note="MZEF prediction, score = 0.564" FT exon 15619022..15619041 FT /note="XPOUND prediction, score = 0.624" FT repeat_region complement(15618769..15618932) FT /rpt_family="L1" FT /note="88% identity: matches 257..420 of consensus" FT repeat_region complement(15618582..15618671) FT /rpt_family="L1" FT /note="88% identity: matches 300..389 of consensus" FT exon 15618348..15618623 FT /note="GENSCAN prediction, score = 14.13" FT repeat_region complement(15618337..15618522) FT /rpt_family="L1" FT /note="84% identity: matches 452..635 of consensus" FT repeat_region complement(15618128..15618256) FT /rpt_family="L1" FT /note="83% identity: matches 713..841 of consensus" FT exon 15618139..15618224 FT /note="XPOUND prediction, score = 0.358" FT exon 15618076..15618084 FT /note="XPOUND prediction, score = 0.221" FT repeat_region complement(15617808..15618012) FT /rpt_family="L1" FT /note="89% identity: matches 86..290 of consensus" FT repeat_region complement(15617692..15617776) FT /rpt_family="L1" FT /note="86% identity: matches 307..395 of consensus" FT repeat_region complement(15617393..15617673) FT /rpt_family="ALU" FT /note="92% identity: matches 1..281 of consensus" FT repeat_region 15617393..15617673 FT /rpt_family="L1" FT /note="89% identity: matches 245..526 of consensus" FT repeat_region complement(15617040..15617361) FT /rpt_family="L1" FT /note="83% identity: matches 419..741 of consensus" FT repeat_region complement(15616857..15617038) FT /rpt_family="THE" FT /note="84% identity: matches 167..343 of consensus" FT repeat_region complement(15615968..15616381) FT /rpt_family="ALU" FT /note="83% identity: matches 1..419 of consensus" FT repeat_region 15615972..15616244 FT /rpt_family="L1" FT /note="84% identity: matches 250..521 of consensus" FT repeat_region complement(15615948..15615961) FT /note="AATA repeat" FT repeat_region complement(15615796..15615897) FT /rpt_family="ALU" FT /note="86% identity: matches 178..279 of consensus" FT repeat_region 15615803..15615868 FT /rpt_family="L1" FT /note="86% identity: matches 169..234 of consensus" FT repeat_region complement(15615364..15615399) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 80.6%, counts = 18" FT repeat_region 15613545..15613818 FT /rpt_family="L1" FT /note="83% identity: matches 250..524 of consensus" FT repeat_region complement(15613545..15613811) FT /rpt_family="ALU" FT /note="88% identity: matches 9..273 of consensus" FT repeat_region complement(15613516..15613529) FT /note="AAAAG repeat" FT repeat_region complement(15613401..15613491) FT /rpt_family="MER6" FT /note="87% identity: matches 578..670 of consensus" FT exon complement(15612828..15612972) FT /note="MZEF prediction, score = 0.869" FT exon complement(15612717..15612798) FT /note="MZEF prediction, score = 0.596" FT repeat_region 15612092..15612150 FT /rpt_family="THE" FT /note="91% identity: matches 71..129 of consensus" FT exon 15611929..15611939 FT /note="XPOUND prediction, score = 0.309" FT exon 15611321..15611357 FT /note="XPOUND prediction, score = 0.432" FT repeat_region 15611129..15611335 FT /rpt_family="THE" FT /note="87% identity: matches 155..361 of consensus" FT repeat_region 15610940..15611045 FT /rpt_family="THE" FT /note="86% identity: matches 19..129 of consensus" FT repeat_region 15610752..15610858 FT /rpt_family="L1" FT /note="82% identity: matches 831..937 of consensus" FT repeat_region complement(15610723..15610856) FT /rpt_type=INVERTED FT /note="IR2, 79% complementary to IR2' (25944..26077)" FT repeat_region complement(15610643..15610852) FT /rpt_family="ALU" FT /note="81% identity: matches 5..213 of consensus" FT repeat_region complement(15610331..15610641) FT /rpt_type=INVERTED FT /note="IR3, 87% complementary to IR3' (27002..27299)" FT repeat_region 15610482..15610609 FT /rpt_family="ALU" FT /note="89% identity: matches 595..721 of consensus" FT repeat_region complement(15610495..15610608) FT /rpt_family="L1" FT /note="87% identity: matches 178..290 of consensus" FT repeat_region complement(15610323..15610456) FT /rpt_type=INVERTED FT /note="IR2', 79% complementary to IR2 (25544..25677)" FT repeat_region 15610335..15610438 FT /rpt_family="ALU" FT /note="95% identity: matches 469..572 of consensus" FT repeat_region complement(15610323..15610438) FT /rpt_family="L1" FT /note="91% identity: matches 481..596 of consensus" FT repeat_region complement(15610276..15610322) FT /rpt_family="ALU" FT /note="91% identity: matches 684..730 of consensus" FT repeat_region complement(15610213..15610228) FT /note="AAAGA repeat" FT repeat_region complement(15609287..15609406) FT /rpt_family="ALU" FT /note="94% identity: matches 1..120 of consensus" FT exon complement(15609306..15609405) FT /note="MZEF prediction, score = 0.574" FT repeat_region complement(15609101..15609398) FT /rpt_type=INVERTED FT /note="IR3', 87% complementary to IR3 (25759..26069)" FT repeat_region complement(15609158..15609396) FT /rpt_type=INVERTED FT /note="IR4, 75% complementary to IR4' (27487..27722)" FT repeat_region 15609287..15609395 FT /rpt_family="L1" FT /note="90% identity: matches 477..585 of consensus" FT repeat_region complement(15609119..15609264) FT /rpt_family="ALU" FT /note="91% identity: matches 132..277 of consensus" FT repeat_region 15609121..15609252 FT /rpt_family="L1" FT /note="87% identity: matches 166..297 of consensus" FT repeat_region complement(15608678..15608913) FT /rpt_type=INVERTED FT /note="IR4', 75% complementary to IR4 (27004..27242)" FT repeat_region 15608806..15608860 FT /rpt_family="ALU" FT /note="89% identity: matches 438..492 of consensus" FT repeat_region 15608668..15608766 FT /rpt_family="ALU" FT /note="84% identity: matches 1..99 of consensus" FT repeat_region complement(15608200..15608280) FT /rpt_family="THE" FT /note="86% identity: matches 9..88 of consensus" FT repeat_region complement(15608129..15608168) FT /rpt_family="aatgggtt repeat" FT /rpt_type=TANDEM FT /note="homology = 85.0%, counts = 5" FT repeat_region complement(15607886..15607946) FT /rpt_family="THE" FT /note="90% identity: matches 13..73 of consensus" FT repeat_region complement(15607486..15607750) FT /rpt_family="ALU" FT /note="84% identity: matches 10..270 of consensus" FT repeat_region 15607486..15607670 FT /rpt_family="L1" FT /note="83% identity: matches 169..352 of consensus" FT repeat_region complement(15607456..15607580) FT /rpt_type=INVERTED FT /note="IR5, 84% complementary to IR5' (30694..30818)" FT exon 15606180..15606190 FT /note="XPOUND prediction, score = 0.252" FT exon complement(15605937..15606016) FT /note="MZEF prediction, score = 0.773" FT repeat_region complement(15605582..15605706) FT /rpt_type=INVERTED FT /note="IR5', 84% complementary to IR5 (28820..28944)" FT repeat_region 15605536..15605682 FT /rpt_family="ALU" FT /note="90% identity: matches 133..279 of consensus" FT repeat_region complement(15605559..15605678) FT /rpt_family="L1" FT /note="88% identity: matches 167..286 of consensus" FT exon complement(15605560..15605677) FT /note="MZEF prediction, score = 0.950" FT repeat_region complement(15605525..15605570) FT /rpt_type=INVERTED FT /note="IR6, 76% complementary to IR6' (31193..31238)" FT repeat_region 15605410..15605513 FT /rpt_family="ALU" FT /note="93% identity: matches 1..104 of consensus" FT repeat_region complement(15605407..15605513) FT /rpt_family="L1" FT /note="89% identity: matches 409..515 of consensus" FT exon 15605307..15605323 FT /note="XPOUND prediction, score = 0.300" FT repeat_region complement(15605162..15605207) FT /rpt_type=INVERTED FT /note="IR6', 76% complementary to IR6 (30830..30875)" FT repeat_region complement(15605086..15605183) FT /rpt_family="ALU" FT /note="83% identity: matches 12..109 of consensus" FT repeat_region complement(15604105..15604323) FT /rpt_family="L1" FT /note="91% identity: matches 212..428 of consensus" FT repeat_region complement(15604054..15604093) FT /rpt_family="L1" FT /note="97% identity: matches 125..164 of consensus" FT repeat_region complement(15603281..15603987) FT /rpt_family="L1" FT /note="88% identity: matches 1..706 of consensus" FT exon complement(15603625..15603697) FT /note="MZEF prediction, score = 0.819" FT repeat_region complement(15602998..15603255) FT /rpt_family="ALU" FT /note="87% identity: matches 27..282 of consensus" FT repeat_region 15602998..15603255 FT /rpt_family="L1" FT /note="83% identity: matches 245..500 of consensus" FT repeat_region complement(15602958..15602997) FT /rpt_family="aaat repeat" FT /rpt_type=TANDEM FT /note="homology = 80.0%, counts = 10" FT repeat_region complement(15602975..15602987) FT /note="ATAA repeat" FT repeat_region complement(15602695..15602943) FT /rpt_family="ALU" FT /note="87% identity: matches 160..404 of consensus" FT repeat_region 15602678..15602941 FT /rpt_family="L1" FT /note="83% identity: matches 167..424 of consensus" FT repeat_region complement(15602627..15602671) FT /rpt_family="aaaaaaaaaaagaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 97.8%, counts = 3" FT exon complement(15601547..15601602) FT /note="MZEF prediction, score = 0.536" FT repeat_region complement(15600836..15601275) FT /rpt_family="L1" FT /note="81% identity: matches 1..436 of consensus" FT repeat_region complement(15599880..15601040) FT /rpt_family="L1" FT /note="89% identity: matches 1..1172 of consensus" FT exon complement(15599877..15600146) FT /note="GENSCAN prediction, score = 21.93" FT repeat_region complement(15596003..15599821) FT /rpt_family="L1" FT /note="94% identity: matches 1354..5172 of consensus" FT exon complement(15597722..15599014) FT /note="GENSCAN prediction, score = 41.67" FT repeat_region complement(15598589..15598602) FT /note="CACCA repeat" FT exon complement(15595962..15597026) FT /note="GENSCAN prediction, score = 7.33" FT exon complement(15596727..15596878) FT /note="MZEF prediction, score = 0.778" FT repeat_region complement(15595166..15596395) FT /rpt_family="L1" FT /note="93% identity: matches 1..1230 of consensus" FT exon 15595200..15595231 FT /note="XPOUND prediction, score = 0.271" FT exon 15594039..15594170 FT /note="MZEF prediction, score = 0.875" FT exon 15594116..15594158 FT /note="XPOUND prediction, score = 0.369" FT repeat_region complement(15592880..15593064) FT /rpt_family="L1" FT /note="96% identity: matches 353..538 of consensus" FT repeat_region complement(15592876..15592888) FT /note="ATA repeat" FT repeat_region complement(15592853..15592888) FT /rpt_family="aaaata repeat" FT /rpt_type=TANDEM FT /note="homology = 88.9%, counts = 6" FT exon 15592768..15592784 FT /note="XPOUND prediction, score = 0.617" FT exon complement(15592397..15592446) FT /note="MZEF prediction, score = 0.954" FT repeat_region complement(15592186..15592266) FT /rpt_type=INVERTED FT /note="IR7, 79% complementary to IR7' (45394..45474)" FT repeat_region complement(15591652..15591671) FT /note="AGGA repeat" FT repeat_region complement(15591637..15591650) FT /note="AAGG repeat" FT exon 15591369..15591554 FT /note="MZEF prediction, score = 0.919" FT repeat_region 15590960..15591012 FT /rpt_family="L1" FT /note="90% identity: matches 747..799 of consensus" FT repeat_region complement(15590926..15591006) FT /rpt_type=INVERTED FT /note="IR7', 79% complementary to IR7 (44134..44214)" FT repeat_region complement(15590930..15591005) FT /rpt_family="ALU" FT /note="88% identity: matches 143..218 of consensus" FT repeat_region complement(15590755..15590869) FT /note="AGAA repeat" FT repeat_region complement(15590770..15590833) FT /rpt_family="aaga repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 16" FT repeat_region complement(15588710..15589017) FT /rpt_type=INVERTED FT /note="IR8, 82% complementary to IR8' (48154..48457)" FT repeat_region 15588723..15588999 FT /rpt_family="L1" FT /note="88% identity: matches 244..518 of consensus" FT repeat_region complement(15588723..15588997) FT /rpt_family="ALU" FT /note="92% identity: matches 313..584 of consensus" FT exon 15588449..15588613 FT /note="XPOUND prediction, score = 0.467" FT exon 15588248..15588613 FT /note="GENSCAN prediction, score = 36.74" FT exon 15588387..15588420 FT /note="XPOUND prediction, score = 0.403" FT repeat_region complement(15587943..15588246) FT /rpt_type=INVERTED FT /note="IR8', 82% complementary to IR8 (47383..47690)" FT repeat_region complement(15587967..15588235) FT /rpt_family="L1" FT /note="85% identity: matches 158..424 of consensus" FT repeat_region 15587962..15588210 FT /rpt_family="ALU" FT /note="89% identity: matches 144..394 of consensus" FT repeat_region 15587220..15587545 FT /rpt_family="THE" FT /note="84% identity: matches 8..340 of consensus" FT repeat_region 15587060..15587110 FT /rpt_family="THR" FT /note="90% identity: matches 50..100 of consensus" FT repeat_region complement(15587064..15587104) FT /rpt_family="ALU" FT /note="95% identity: matches 6..46 of consensus" FT exon 15586949..15586966 FT /note="XPOUND prediction, score = 0.299" FT repeat_region complement(15586838..15586963) FT /rpt_family="ALU" FT /note="87% identity: matches 929..1054 of consensus" FT repeat_region complement(15586805..15586817) FT /note="TAA repeat" FT repeat_region complement(15586790..15586804) FT /note="TAAT repeat" FT repeat_region complement(15586156..15586207) FT /rpt_family="atcc repeat" FT /rpt_type=TANDEM FT /note="homology = 75.0%, counts = 13" FT repeat_region 15585706..15585973 FT /rpt_family="ALU" FT /note="83% identity: matches 13..279 of consensus" FT repeat_region complement(15585887..15585967) FT /rpt_family="L1" FT /note="86% identity: matches 167..247 of consensus" FT repeat_region complement(15585706..15585927) FT /rpt_type=INVERTED FT /note="IR9, 81% complementary to IR9' (52248..52470)" FT repeat_region complement(15585765..15585818) FT /rpt_family="L1" FT /note="90% identity: matches 472..525 of consensus" FT repeat_region complement(15585708..15585755) FT /rpt_family="L1" FT /note="91% identity: matches 377..424 of consensus" FT exon 15585348..15585427 FT /note="XPOUND prediction, score = 0.411" FT exon 15585300..15585309 FT /note="XPOUND prediction, score = 0.223" FT exon 15584393..15584422 FT /note="XPOUND prediction, score = 0.458" FT repeat_region 15584312..15584416 FT /rpt_family="MER39" FT /note="87% identity: matches 71..176 of consensus" FT repeat_region complement(15583884..15584163) FT /rpt_family="ALU" FT /note="92% identity: matches 1..278 of consensus" FT repeat_region complement(15583930..15584152) FT /rpt_type=INVERTED FT /note="IR9', 81% complementary to IR9 (50473..50694)" FT repeat_region 15583884..15584150 FT /rpt_family="L1" FT /note="88% identity: matches 161..424 of consensus" FT repeat_region complement(15583867..15583899) FT /rpt_type=INVERTED FT /note="IR10, 90% complementary to IR10' (52977..53009)" FT exon 15583637..15583698 FT /note="XPOUND prediction, score = 0.266" FT repeat_region 15583552..15583630 FT /rpt_family="L1" FT /note="88% identity: matches 881..959 of consensus" FT exon 15583490..15583521 FT /note="XPOUND prediction, score = 0.256" FT exon complement(15583480..15583518) FT /note="XPOUND prediction, score = 0.229" FT repeat_region complement(15583391..15583423) FT /rpt_type=INVERTED FT /note="IR10', 90% complementary to IR10 (52501..52533)" FT repeat_region 15583133..15583392 FT /rpt_family="ALU" FT /note="90% identity: matches 1..263 of consensus" FT repeat_region complement(15583147..15583375) FT /rpt_family="L1" FT /note="87% identity: matches 195..424 of consensus" FT repeat_region 15582943..15583088 FT /rpt_family="L1" FT /note="89% identity: matches 565..710 of consensus" FT repeat_region 15582799..15582926 FT /rpt_family="L1" FT /note="92% identity: matches 1322..1449 of consensus" FT exon complement(15582850..15582874) FT /note="XPOUND prediction, score = 0.362" FT exon complement(15582826..15582838) FT /note="XPOUND prediction, score = 0.210" FT repeat_region 15580836..15582772 FT /rpt_family="L1" FT /note="90% identity: matches 1544..3471 of consensus" FT exon 15580901..15581229 FT /note="GENSCAN prediction, score = 2.29" FT repeat_region 15580740..15580839 FT /rpt_family="L1" FT /note="93% identity: matches 474..573 of consensus" FT repeat_region 15580405..15580712 FT /rpt_family="L1" FT /note="82% identity: matches 2..313 of consensus" FT repeat_region 15579996..15580342 FT /rpt_family="L1" FT /note="87% identity: matches 3028..3379 of consensus" FT exon complement(15579982..15580002) FT /note="XPOUND prediction, score = 0.240" FT exon 15579584..15579667 FT /note="MZEF prediction, score = 0.984" FT exon 15579588..15579666 FT /note="XPOUND prediction, score = 0.349" FT exon 15578847..15579021 FT /note="GENSCAN prediction, score = 7.99" FT /note="MZEF prediction, score = 0.999" FT exon 15578945..15578983 FT /note="XPOUND prediction, score = 0.211" FT exon 15578847..15578909 FT /note="XPOUND prediction, score = 0.304" FT exon 15578546..15578570 FT /note="XPOUND prediction, score = 0.396" FT repeat_region 15578478..15578567 FT /rpt_family="L1" FT /note="84% identity: matches 846..935 of consensus" FT repeat_region complement(15578452..15578564) FT /rpt_family="ALU" FT /note="85% identity: matches 908..1020 of consensus" FT repeat_region complement(15578406..15578451) FT /note="AAT repeat" FT repeat_region complement(15578395..15578451) FT /rpt_family="aat repeat" FT /rpt_type=TANDEM FT /note="homology = 91.2%, counts = 19" FT repeat_region complement(15578259..15578405) FT /rpt_family="ALU" FT /note="87% identity: matches 260..406 of consensus" FT repeat_region 15578298..15578327 FT /rpt_family="L1" FT /note="100% identity: matches 697..726 of consensus" FT repeat_region complement(15578170..15578254) FT /rpt_family="tacaaaaaaaacaatca repeat" FT /rpt_type=TANDEM FT /note="homology = 72.9%, counts = 5" FT repeat_region complement(15578198..15578212) FT /note="AAAC repeat" FT exon 15577689..15577719 FT /note="XPOUND prediction, score = 0.288" FT exon complement(15577325..15577427) FT /note="MZEF prediction, score = 0.934" FT exon complement(15577325..15577385) FT /note="GENSCAN prediction, score = 2.86" FT exon 15576939..15576988 FT /note="MZEF prediction, score = 0.911" FT exon complement(15576693..15576931) FT /note="GENSCAN prediction, score = 4.55" FT exon 15576709..15576731 FT /note="XPOUND prediction, score = 0.215" FT repeat_region complement(15576427..15576480) FT /rpt_family="ALU" FT /note="90% identity: matches 6..59 of consensus" FT repeat_region complement(15576349..15576365) FT /note="AAT repeat" FT repeat_region complement(15576200..15576287) FT /rpt_family="ALU" FT /note="86% identity: matches 195..282 of consensus" FT repeat_region complement(15576133..15576158) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 13" FT repeat_region complement(15576132..15576158) FT /note="AC repeat" FT repeat_region complement(15575820..15576100) FT /rpt_type=INVERTED FT /note="IR11, 82% complementary to IR11' (61972..62254)" FT repeat_region 15575820..15576089 FT /rpt_family="ALU" FT /note="87% identity: matches 160..426 of consensus" FT repeat_region complement(15575822..15576083) FT /rpt_family="L1" FT /note="85% identity: matches 167..424 of consensus" FT repeat_region complement(15575266..15575462) FT /rpt_family="ALU" FT /note="84% identity: matches 10..203 of consensus" FT repeat_region 15575339..15575460 FT /rpt_family="L1" FT /note="86% identity: matches 463..585 of consensus" FT repeat_region complement(15575185..15575243) FT /rpt_family="ALU" FT /note="91% identity: matches 599..657 of consensus" FT repeat_region 15574442..15574555 FT /rpt_family="L1" FT /note="85% identity: matches 308..417 of consensus" FT repeat_region complement(15574178..15574555) FT /rpt_family="ALU" FT /note="85% identity: matches 22..402 of consensus" FT repeat_region complement(15574310..15574439) FT /rpt_type=INVERTED FT /note="IR12, 78% complementary to IR12' (62491..62622)" FT repeat_region complement(15574146..15574428) FT /rpt_type=INVERTED FT /note="IR11', 82% complementary to IR11 (60300..60580)" FT repeat_region 15574184..15574426 FT /rpt_family="L1" FT /note="84% identity: matches 184..424 of consensus" FT repeat_region complement(15574103..15574156) FT /rpt_family="aaaaag repeat" FT /rpt_type=TANDEM FT /note="homology = 75.9%, counts = 9" FT repeat_region complement(15573898..15573911) FT /note="TTTTA repeat" FT repeat_region complement(15573778..15573909) FT /rpt_type=INVERTED FT /note="IR12', 78% complementary to IR12 (61961..62090)" FT exon complement(15573777..15573891) FT /note="MZEF prediction, score = 0.556" FT exon 15573779..15573873 FT /note="MZEF prediction, score = 0.827" FT repeat_region 15573786..15573871 FT /rpt_family="ALU" FT /note="88% identity: matches 475..560 of consensus" FT repeat_region complement(15573788..15573826) FT /rpt_family="L1" FT /note="97% identity: matches 547..585 of consensus" FT repeat_region 15573447..15573575 FT /rpt_family="L1" FT /note="93% identity: matches 464..592 of consensus" FT repeat_region complement(15573292..15573568) FT /rpt_family="ALU" FT /note="91% identity: matches 12..282 of consensus" FT repeat_region complement(15573306..15573379) FT /rpt_type=INVERTED FT /note="IR13, 85% complementary to IR13' (63257..63332)" FT repeat_region 15573292..15573346 FT /rpt_family="L1" FT /note="89% identity: matches 245..299 of consensus" FT repeat_region complement(15573068..15573143) FT /rpt_type=INVERTED FT /note="IR13', 85% complementary to IR13 (63021..63094)" FT repeat_region complement(15572889..15573143) FT /rpt_family="L1" FT /note="85% identity: matches 175..424 of consensus" FT repeat_region 15572885..15573134 FT /rpt_family="ALU" FT /note="87% identity: matches 158..404 of consensus" FT exon 15572945..15572975 FT /note="XPOUND prediction, score = 0.570" FT repeat_region complement(15571715..15571760) FT /rpt_type=INVERTED FT /note="IR14, 84% complementary to IR14' (65193..65236)" FT exon 15571622..15571757 FT /note="MZEF prediction, score = 0.975" FT repeat_region complement(15571429..15571440) FT /note="TA repeat" FT repeat_region complement(15571164..15571207) FT /rpt_type=INVERTED FT /note="IR14', 84% complementary to IR14 (64640..64685)" FT repeat_region complement(15569963..15570267) FT /rpt_type=INVERTED FT /note="IR15, 80% complementary to IR15' (66565..66867)" FT repeat_region 15570169..15570257 FT /rpt_family="THR" FT /note="84% identity: matches 1..89 of consensus" FT repeat_region complement(15570028..15570257) FT /rpt_family="ALU" FT /note="85% identity: matches 339..567 of consensus" FT repeat_region 15570033..15570210 FT /rpt_family="L1" FT /note="86% identity: matches 696..877 of consensus" FT repeat_region complement(15569986..15570070) FT /rpt_family="MIR" FT /note="84% identity: matches 11..95 of consensus" FT repeat_region complement(15569851..15569985) FT /rpt_family="aaaaaaaaaaaaata repeat" FT /rpt_type=TANDEM FT /note="homology = 68.1%, counts = 9" FT repeat_region complement(15569968..15569981) FT /note="AAAAG repeat" FT repeat_region complement(15569819..15569847) FT /note="TTTG repeat" FT repeat_region complement(15569533..15569835) FT /rpt_type=INVERTED FT /note="IR15', 80% complementary to IR15 (66133..66437)" FT repeat_region complement(15569532..15569833) FT /rpt_type=INVERTED FT /note="IR16, 92% complementary to IR16' (67833..68134)" FT repeat_region 15569532..15569812 FT /rpt_family="ALU" FT /note="97% identity: matches 1..281 of consensus" FT repeat_region complement(15569531..15569812) FT /rpt_family="L1" FT /note="93% identity: matches 245..527 of consensus" FT misc_feature complement(15569531..15569808) FT /note="CpG_island (%GC=64.4, o/e=0.84, #CpGs=26)" FT exon 15569594..15569630 FT /note="XPOUND prediction, score = 0.376" FT repeat_region complement(15568757..15569006) FT /rpt_family="L1" FT /note="81% identity: matches 175..428 of consensus" FT exon 15568944..15568966 FT /note="XPOUND prediction, score = 0.237" FT repeat_region complement(15568568..15568744) FT /rpt_family="L1" FT /note="88% identity: matches 267..444 of consensus" FT repeat_region complement(15568266..15568567) FT /rpt_type=INVERTED FT /note="IR16', 92% complementary to IR16 (66567..66868)" FT repeat_region 15568291..15568559 FT /rpt_family="L1" FT /note="90% identity: matches 249..518 of consensus" FT repeat_region complement(15568291..15568557) FT /rpt_family="ALU" FT /note="94% identity: matches 313..579 of consensus" FT repeat_region complement(15567955..15568074) FT /rpt_family="aataa repeat" FT /rpt_type=TANDEM FT /note="homology = 60.8%, counts = 24" FT repeat_region 15567860..15567938 FT /rpt_family="L1" FT /note="85% identity: matches 505..585 of consensus" FT repeat_region complement(15567660..15567934) FT /rpt_type=INVERTED FT /note="IR17, 75% complementary to IR17' (69833..70111)" FT repeat_region complement(15567859..15567921) FT /rpt_family="ALU" FT /note="88% identity: matches 31..93 of consensus" FT repeat_region complement(15567693..15567807) FT /rpt_family="L1" FT /note="84% identity: matches 320..435 of consensus" FT repeat_region 15567091..15567299 FT /rpt_family="L1" FT /note="88% identity: matches 214..420 of consensus" FT repeat_region complement(15567124..15567294) FT /rpt_family="ALU" FT /note="89% identity: matches 398..570 of consensus" FT repeat_region complement(15567068..15567164) FT /rpt_family="ALU" FT /note="85% identity: matches 732..833 of consensus" FT exon 15566708..15566718 FT /note="XPOUND prediction, score = 0.205" FT repeat_region complement(15566556..15566573) FT /note="TTG repeat" FT repeat_region complement(15566289..15566567) FT /rpt_type=INVERTED FT /note="IR17', 75% complementary to IR17 (68466..68740)" FT repeat_region 15566289..15566549 FT /rpt_family="ALU" FT /note="82% identity: matches 318..576 of consensus" FT repeat_region complement(15566289..15566549) FT /rpt_family="L1" FT /note="80% identity: matches 168..423 of consensus" FT repeat_region complement(15565405..15565451) FT /rpt_family="ALU" FT /note="93% identity: matches 648..694 of consensus" FT repeat_region complement(15565134..15565257) FT /rpt_family="ALU" FT /note="88% identity: matches 293..416 of consensus" FT repeat_region 15565118..15565237 FT /rpt_family="L1" FT /note="86% identity: matches 174..293 of consensus" FT repeat_region complement(15565105..15565142) FT /rpt_family="MER42" FT /note="94% identity: matches 12..49 of consensus" FT repeat_region complement(15563159..15563430) FT /rpt_family="ALU" FT /note="87% identity: matches 525..796 of consensus" FT repeat_region 15563304..15563424 FT /rpt_family="L1" FT /note="86% identity: matches 465..585 of consensus" FT repeat_region 15563172..15563271 FT /rpt_family="L1" FT /note="83% identity: matches 329..428 of consensus" FT repeat_region complement(15563113..15563153) FT /rpt_type=INVERTED FT /note="IR18, 85% complementary to IR18' (74540..74580)" FT repeat_region complement(15562016..15562291) FT /rpt_family="ALU" FT /note="87% identity: matches 1..278 of consensus" FT repeat_region 15562012..15562275 FT /rpt_family="L1" FT /note="84% identity: matches 162..422 of consensus" FT repeat_region complement(15561820..15561860) FT /rpt_type=INVERTED FT /note="IR18', 85% complementary to IR18 (73247..73287)" FT exon complement(15560872..15561157) FT /note="GENSCAN prediction, score = 8.09" FT repeat_region complement(15561026..15561113) FT /rpt_family="L1" FT /note="89% identity: matches 11..98 of consensus" FT repeat_region complement(15560767..15561015) FT /rpt_family="L1" FT /note="89% identity: matches 95..353 of consensus" FT exon complement(15560279..15560787) FT /note="GENSCAN prediction, score = 31.58" FT repeat_region complement(15560484..15560696) FT /rpt_family="L1" FT /note="87% identity: matches 1156..1368 of consensus" FT repeat_region complement(15558604..15560416) FT /rpt_family="L1" FT /note="92% identity: matches 1338..3156 of consensus" FT repeat_region complement(15556251..15559382) FT /rpt_family="L1" FT /note="92% identity: matches 7..3130 of consensus" FT exon complement(15558690..15559304) FT /note="GENSCAN prediction, score = 10.74" FT repeat_region complement(15556178..15556252) FT /rpt_family="L1" FT /note="96% identity: matches 1604..1678 of consensus" FT repeat_region complement(15555691..15556175) FT /rpt_family="L1" FT /note="90% identity: matches 170..654 of consensus" FT exon 15555003..15555057 FT /note="MZEF prediction, score = 0.730" FT exon 15554719..15554748 FT /note="XPOUND prediction, score = 0.253" FT exon 15554360..15554387 FT /note="XPOUND prediction, score = 0.295" FT repeat_region complement(15554036..15554316) FT /rpt_family="ALU" FT /note="91% identity: matches 2..282 of consensus" FT misc_feature complement(15554078..15554314) FT /note="CpG_island (%GC=62.0, o/e=0.92, #CpGs=22)" FT repeat_region 15554036..15554312 FT /rpt_family="L1" FT /note="88% identity: matches 245..521 of consensus" FT exon complement(15554011..15554180) FT /note="MZEF prediction, score = 0.670" FT exon complement(15553744..15553826) FT /note="MZEF prediction, score = 0.713" FT exon complement(15553510..15553591) FT /note="XPOUND prediction, score = 0.258" FT exon complement(15553306..15553483) FT /note="XPOUND prediction, score = 0.402" FT misc_feature complement(15552734..15553334) FT /note="CpG_island (%GC=65.9, o/e=0.86, #CpGs=56)" FT exon complement(15552731..15552980) FT /note="XPOUND prediction, score = 0.613" FT exon complement(15552808..15552884) FT /note="GENSCAN prediction, score = 5.61" FT exon complement(15552461..15552618) FT /note="GENSCAN prediction, score = 1.53" FT exon 15552470..15552520 FT /note="XPOUND prediction, score = 0.229" FT exon 15552386..15552400 FT /note="XPOUND prediction, score = 0.224" FT repeat_region complement(15552269..15552314) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 23" FT repeat_region complement(15552269..15552314) FT /note="AC repeat" FT repeat_region complement(15552084..15552096) FT /note="CAC repeat" FT exon 15551970..15552008 FT /note="XPOUND prediction, score = 0.667" FT repeat_region complement(15551649..15551725) FT /rpt_family="ttttatt repeat" FT /rpt_type=TANDEM FT /note="homology = 70.1%, counts = 11" FT repeat_region complement(15551530..15551671) FT /rpt_type=INVERTED FT /note="IR19, 80% complementary to IR19' (85050..85191)" FT repeat_region 15551530..15551638 FT /rpt_family="ALU" FT /note="83% identity: matches 159..267 of consensus" FT repeat_region complement(15551228..15551510) FT /rpt_family="ALU" FT /note="92% identity: matches 1..282 of consensus" FT repeat_region 15551228..15551510 FT /rpt_family="L1" FT /note="88% identity: matches 245..526 of consensus" FT misc_feature complement(15551232..15551507) FT /note="CpG_island (%GC=61.2, o/e=0.80, #CpGs=20)" FT repeat_region complement(15551209..15551350) FT /rpt_type=INVERTED FT /note="IR19', 80% complementary to IR19 (84729..84870)" FT exon complement(15550827..15550975) FT /note="GENSCAN prediction, score = 2.23" FT repeat_region complement(15550505..15550517) FT /note="ATTC repeat" FT exon complement(15550398..15550428) FT /note="XPOUND prediction, score = 0.626" FT exon complement(15549624..15549631) FT /note="XPOUND prediction, score = 0.202" FT repeat_region 15549373..15549507 FT /rpt_family="L1" FT /note="94% identity: matches 1315..1449 of consensus" FT repeat_region complement(15548782..15548859) FT /rpt_type=INVERTED FT /note="IR20, 82% complementary to IR20' (88540..88617)" FT repeat_region 15548796..15548849 FT /rpt_family="ALU" FT /note="94% identity: matches 966..1019 of consensus" FT repeat_region 15548575..15548651 FT /rpt_family="MER37" FT /note="89% identity: matches 124..201 of consensus" FT repeat_region complement(15548473..15548523) FT /rpt_family="ALU" FT /note="94% identity: matches 305..355 of consensus" FT repeat_region 15548474..15548511 FT /rpt_family="L1" FT /note="97% identity: matches 387..424 of consensus" FT exon complement(15547988..15548239) FT /note="GENSCAN prediction, score = 7.75" FT exon complement(15548183..15548229) FT /note="XPOUND prediction, score = 0.310" FT exon complement(15547988..15548126) FT /note="XPOUND prediction, score = 0.441" FT repeat_region complement(15547783..15547860) FT /rpt_type=INVERTED FT /note="IR20', 82% complementary to IR20 (87541..87618)" FT repeat_region 15547622..15547856 FT /rpt_family="L1" FT /note="83% identity: matches 696..935 of consensus" FT repeat_region complement(15547580..15547856) FT /rpt_family="ALU" FT /note="86% identity: matches 1..279 of consensus" FT repeat_region complement(15547535..15547782) FT /rpt_type=INVERTED FT /note="IR21, 82% complementary to IR21' (89108..89354)" FT repeat_region complement(15547548..15547566) FT /note="AAAG repeat" FT repeat_region complement(15547046..15547292) FT /rpt_type=INVERTED FT /note="IR21', 82% complementary to IR21 (88618..88865)" FT repeat_region complement(15547022..15547271) FT /rpt_type=INVERTED FT /note="IR23, 83% complementary to IR23' (90278..90528)" FT repeat_region complement(15546986..15547267) FT /rpt_type=INVERTED FT /note="IR22, 85% complementary to IR22' (89479..89764)" FT repeat_region 15547008..15547252 FT /rpt_family="ALU" FT /note="86% identity: matches 36..278 of consensus" FT repeat_region complement(15547008..15547246) FT /rpt_family="L1" FT /note="83% identity: matches 167..402 of consensus" FT repeat_region complement(15546674..15546924) FT /rpt_family="ALU" FT /note="90% identity: matches 156..404 of consensus" FT repeat_region complement(15546636..15546921) FT /rpt_type=INVERTED FT /note="IR22', 85% complementary to IR22 (89133..89414)" FT repeat_region 15546651..15546918 FT /rpt_family="L1" FT /note="86% identity: matches 161..424 of consensus" FT repeat_region complement(15546357..15546631) FT /rpt_family="ALU" FT /note="87% identity: matches 3..281 of consensus" FT repeat_region 15546357..15546624 FT /rpt_family="L1" FT /note="85% identity: matches 245..517 of consensus" FT repeat_region complement(15546327..15546342) FT /note="AATT repeat" FT exon complement(15546176..15546210) FT /note="MZEF prediction, score = 0.631" FT repeat_region complement(15545872..15546122) FT /rpt_type=INVERTED FT /note="IR23', 83% complementary to IR23 (89129..89378)" FT repeat_region complement(15545891..15546115) FT /rpt_family="ALU" FT /note="84% identity: matches 57..281 of consensus" FT repeat_region 15545891..15546106 FT /rpt_family="L1" FT /note="81% identity: matches 245..462 of consensus" FT exon 15546016..15546026 FT /note="XPOUND prediction, score = 0.227" FT exon 15545968..15545978 FT /note="XPOUND prediction, score = 0.213" FT repeat_region 15545751..15545805 FT /rpt_family="ALU" FT /note="89% identity: matches 518..572 of consensus" FT repeat_region 15545577..15545653 FT /rpt_family="ALU" FT /note="85% identity: matches 406..482 of consensus" FT repeat_region 15545474..15545544 FT /rpt_family="MER37" FT /note="88% identity: matches 46..116 of consensus" FT repeat_region 15545168..15545298 FT /rpt_family="L1" FT /note="89% identity: matches 593..723 of consensus" FT repeat_region 15544292..15545082 FT /rpt_family="L1" FT /note="87% identity: matches 620..1415 of consensus" FT exon 15544945..15545058 FT /note="XPOUND prediction, score = 0.675" FT repeat_region complement(15544121..15544183) FT /rpt_family="MER37" FT /note="90% identity: matches 145..207 of consensus" FT repeat_region complement(15544098..15544111) FT /note="TTAT repeat" FT repeat_region 15543969..15544079 FT /rpt_family="ALU" FT /note="84% identity: matches 159..268 of consensus" FT repeat_region 15543869..15543930 FT /rpt_family="ALU" FT /note="88% identity: matches 221..282 of consensus" FT repeat_region 15543659..15543781 FT /rpt_family="ALU" FT /note="83% identity: matches 12..134 of consensus" FT repeat_region complement(15543272..15543325) FT /rpt_family="MER42" FT /note="88% identity: matches 4..57 of consensus" FT repeat_region complement(15542701..15542973) FT /rpt_family="ALU" FT /note="84% identity: matches 455..727 of consensus" FT repeat_region 15542783..15542971 FT /rpt_family="L1" FT /note="84% identity: matches 746..935 of consensus" FT repeat_region complement(15542668..15542850) FT /rpt_type=INVERTED FT /note="IR24, 82% complementary to IR24' (94780..94959)" FT repeat_region complement(15542553..15542601) FT /rpt_family="L1" FT /note="91% identity: matches 240..288 of consensus" FT repeat_region 15542533..15542585 FT /rpt_family="ALU" FT /note="90% identity: matches 551..603 of consensus" FT repeat_region complement(15542499..15542513) FT /note="ATTT repeat" FT exon complement(15542346..15542383) FT /note="XPOUND prediction, score = 0.294" FT exon 15542290..15542379 FT /note="MZEF prediction, score = 0.748" FT repeat_region complement(15541441..15541620) FT /rpt_type=INVERTED FT /note="IR24', 82% complementary to IR24 (93550..93732)" FT repeat_region complement(15541452..15541599) FT /rpt_family="L1" FT /note="85% identity: matches 161..309 of consensus" FT repeat_region 15541452..15541591 FT /rpt_family="ALU" FT /note="89% identity: matches 279..418 of consensus" FT repeat_region complement(15541420..15541443) FT /note="TTTTG repeat" FT repeat_region complement(15541409..15541443) FT /rpt_family="ttttg repeat" FT /rpt_type=TANDEM FT /note="homology = 85.7%, counts = 7" FT repeat_region 15541308..15541409 FT /rpt_family="ALU" FT /note="91% identity: matches 14..115 of consensus" FT repeat_region complement(15541303..15541409) FT /rpt_family="L1" FT /note="86% identity: matches 477..585 of consensus" FT repeat_region complement(15541195..15541240) FT /rpt_family="ALU" FT /note="91% identity: matches 6..51 of consensus" FT exon 15540531..15540632 FT /note="MZEF prediction, score = 0.706" FT repeat_region complement(15539996..15540030) FT /note="TTAT repeat" FT repeat_region complement(15539991..15540030) FT /rpt_family="ttat repeat" FT /rpt_type=TANDEM FT /note="homology = 95.0%, counts = 10" FT repeat_region complement(15539707..15539987) FT /rpt_type=INVERTED FT /note="IR25, 75% complementary to IR25' (97463..97743)" FT repeat_region 15539707..15539983 FT /rpt_family="ALU" FT /note="91% identity: matches 6..282 of consensus" FT repeat_region complement(15539707..15539983) FT /rpt_family="L1" FT /note="87% identity: matches 245..521 of consensus" FT misc_feature complement(15539709..15539944) FT /note="CpG_island (%GC=58.5, o/e=0.85, #CpGs=17)" FT exon 15539352..15539525 FT /note="MZEF prediction, score = 0.581" FT repeat_region complement(15538657..15538937) FT /rpt_type=INVERTED FT /note="IR25', 75% complementary to IR25 (96413..96693)" FT repeat_region 15538812..15538868 FT /rpt_family="L1" FT /note="89% identity: matches 466..522 of consensus" FT repeat_region complement(15538684..15538838) FT /rpt_family="ALU" FT /note="85% identity: matches 250..404 of consensus" FT repeat_region 15538683..15538838 FT /rpt_family="L1" FT /note="82% identity: matches 183..338 of consensus" FT repeat_region complement(15538653..15538830) FT /rpt_type=INVERTED FT /note="IR26, 79% complementary to IR26' (99389..99567)" FT repeat_region 15538207..15538364 FT /rpt_family="ALU" FT /note="83% identity: matches 32..187 of consensus" FT repeat_region complement(15537144..15537263) FT /rpt_family="atgaaatattatatttattt repeat" FT /rpt_type=TANDEM FT /note="homology = 66.7%, counts = 6" FT repeat_region 15537083..15537119 FT /rpt_family="ALU" FT /note="97% identity: matches 63..99 of consensus" FT repeat_region complement(15536724..15537016) FT /rpt_type=INVERTED FT /note="IR27, 90% complementary to IR27' (100891..101183)" FT repeat_region complement(15536833..15537011) FT /rpt_type=INVERTED FT /note="IR26', 79% complementary to IR26 (97570..97747)" FT repeat_region 15536731..15537003 FT /rpt_family="ALU" FT /note="91% identity: matches 2..274 of consensus" FT repeat_region complement(15536731..15537003) FT /rpt_family="L1" FT /note="88% identity: matches 245..518 of consensus" FT misc_feature complement(15536860..15536961) FT /note="CpG_island (%GC=67.6, o/e=0.75, #CpGs=9)" FT repeat_region complement(15536571..15536586) FT /note="TTATT repeat" FT exon complement(15536506..15536536) FT /note="XPOUND prediction, score = 0.250" FT repeat_region 15536464..15536515 FT /rpt_family="ALU" FT /note="92% identity: matches 629..680 of consensus" FT repeat_region complement(15536301..15536377) FT /rpt_family="ALU" FT /note="87% identity: matches 486..562 of consensus" FT repeat_region complement(15536149..15536277) FT /rpt_family="ALU" FT /note="82% identity: matches 448..576 of consensus" FT exon 15536153..15536156 FT /note="XPOUND prediction, score = 0.203" FT repeat_region complement(15536101..15536148) FT /rpt_family="ALU" FT /note="93% identity: matches 427..475 of consensus" FT repeat_region complement(15536085..15536099) FT /note="TAAA repeat" FT repeat_region complement(15535973..15536016) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 79.5%, counts = 22" FT repeat_region complement(15535996..15536006) FT /note="TA repeat" FT repeat_region complement(15535622..15535672) FT /rpt_family="atttttttaagttaaat repeat" FT /rpt_type=TANDEM FT /note="homology = 86.3%, counts = 3" FT repeat_region complement(15535217..15535509) FT /rpt_type=INVERTED FT /note="IR27', 90% complementary to IR27 (99384..99676)" FT exon complement(15535412..15535508) FT /note="MZEF prediction, score = 0.692" FT repeat_region 15535230..15535501 FT /rpt_family="L1" FT /note="91% identity: matches 245..517 of consensus" FT repeat_region complement(15535230..15535500) FT /rpt_family="ALU" FT /note="94% identity: matches 313..583 of consensus" FT repeat_region complement(15535173..15535488) FT /rpt_type=INVERTED FT /note="IR28, 81% complementary to IR28' (101947..102261)" FT repeat_region complement(15535158..15535229) FT /rpt_family="aaaaaaataaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 76.4%, counts = 6" FT repeat_region complement(15535179..15535213) FT /note="AATA repeat" FT repeat_region complement(15534651..15534930) FT /rpt_family="ALU" FT /note="85% identity: matches 150..426 of consensus" FT repeat_region 15534657..15534912 FT /rpt_family="L1" FT /note="83% identity: matches 167..418 of consensus" FT repeat_region complement(15534622..15534640) FT /note="AAAAT repeat" FT repeat_region complement(15534139..15534453) FT /rpt_type=INVERTED FT /note="IR28', 81% complementary to IR28 (100912..101227)" FT repeat_region complement(15534435..15534448) FT /note="TTTTC repeat" FT repeat_region complement(15534399..15534412) FT /note="TTTTC repeat" FT repeat_region complement(15534272..15534390) FT /rpt_family="L1" FT /note="84% identity: matches 169..287 of consensus" FT repeat_region 15534139..15534390 FT /rpt_family="ALU" FT /note="85% identity: matches 22..270 of consensus" FT repeat_region complement(15534145..15534250) FT /rpt_family="L1" FT /note="83% identity: matches 464..568 of consensus" FT repeat_region complement(15533684..15533957) FT /rpt_family="ALU" FT /note="86% identity: matches 9..277 of consensus" FT repeat_region 15533696..15533952 FT /rpt_family="L1" FT /note="84% identity: matches 174..424 of consensus" FT exon 15533500..15533567 FT /note="MZEF prediction, score = 0.796" FT misc_feature complement(15532891..15533138) FT /note="CpG_island (%GC=60.5, o/e=0.88, #CpGs=21)" FT repeat_region 15532996..15533124 FT /rpt_family="L1" FT /note="89% identity: matches 464..592 of consensus" FT repeat_region complement(15532855..15533124) FT /rpt_family="ALU" FT /note="85% identity: matches 5..281 of consensus" FT repeat_region 15532926..15532976 FT /rpt_family="L1" FT /note="90% identity: matches 383..433 of consensus" FT repeat_region 15532860..15532951 FT /rpt_family="L1" FT /note="86% identity: matches 167..257 of consensus" FT repeat_region complement(15532832..15532850) FT /note="AAAT repeat" FT repeat_region complement(15531458..15531470) FT /note="TTTC repeat" FT repeat_region complement(15531182..15531217) FT /rpt_type=INVERTED FT /note="IR29, 77% complementary to IR29' (105404..105439)" FT repeat_region complement(15531174..15531186) FT /note="AAAT repeat" FT repeat_region complement(15530961..15530996) FT /rpt_type=INVERTED FT /note="IR29', 77% complementary to IR29 (105183..105218)" FT repeat_region 15530720..15530969 FT /rpt_family="ALU" FT /note="88% identity: matches 180..426 of consensus" FT repeat_region complement(15530717..15530969) FT /rpt_family="L1" FT /note="84% identity: matches 312..567 of consensus" FT repeat_region complement(15530648..15530670) FT /note="TTG repeat" FT repeat_region complement(15530629..15530670) FT /rpt_family="ttg repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 14" FT repeat_region complement(15530631..15530647) FT /note="TTGTT repeat" FT repeat_region complement(15530452..15530600) FT /rpt_family="L1" FT /note="85% identity: matches 182..330 of consensus" FT repeat_region 15530434..15530598 FT /rpt_family="ALU" FT /note="86% identity: matches 240..404 of consensus" FT repeat_region 15530365..15530477 FT /rpt_family="ALU" FT /note="84% identity: matches 25..137 of consensus" FT repeat_region complement(15529489..15529511) FT /note="TTTA repeat" FT repeat_region complement(15529327..15529495) FT /rpt_type=INVERTED FT /note="IR30, 82% complementary to IR30' (108344..108514)" FT repeat_region 15529348..15529486 FT /rpt_family="ALU" FT /note="92% identity: matches 417..555 of consensus" FT repeat_region complement(15529338..15529486) FT /rpt_family="L1" FT /note="85% identity: matches 245..393 of consensus" FT exon 15529374..15529378 FT /note="XPOUND prediction, score = 0.324" FT repeat_region complement(15529327..15529378) FT /rpt_type=INVERTED FT /note="IR32, 78% complementary to IR32' (108344..108395)" FT repeat_region complement(15529214..15529320) FT /rpt_family="L1" FT /note="90% identity: matches 409..515 of consensus" FT repeat_region 15529201..15529320 FT /rpt_family="ALU" FT /note="93% identity: matches 327..446 of consensus" FT repeat_region 15529107..15529152 FT /rpt_family="L1" FT /note="93% identity: matches 412..457 of consensus" FT repeat_region 15529054..15529104 FT /rpt_family="ALU" FT /note="94% identity: matches 477..527 of consensus" FT repeat_region complement(15529043..15529092) FT /rpt_family="L1" FT /note="94% identity: matches 547..596 of consensus" FT exon 15528275..15528295 FT /note="XPOUND prediction, score = 0.613" FT repeat_region complement(15528079..15528171) FT /rpt_family="L1" FT /note="91% identity: matches 167..259 of consensus" FT repeat_region 15528059..15528169 FT /rpt_family="ALU" FT /note="92% identity: matches 341..451 of consensus" FT repeat_region complement(15528005..15528056) FT /rpt_type=INVERTED FT /note="IR32', 78% complementary to IR32 (107022..107073)" FT repeat_region complement(15527895..15528056) FT /rpt_family="ALU" FT /note="88% identity: matches 424..583 of consensus" FT repeat_region complement(15527886..15528056) FT /rpt_type=INVERTED FT /note="IR30', 82% complementary to IR30 (106905..107073)" FT repeat_region 15527895..15528050 FT /rpt_family="L1" FT /note="85% identity: matches 245..398 of consensus" FT misc_feature complement(15527653..15527881) FT /note="CpG_island (%GC=69.9, o/e=0.80, #CpGs=24)" FT exon complement(15527370..15527792) FT /note="XPOUND prediction, score = 0.887" FT repeat_region complement(15527699..15527713) FT /note="GCC repeat" FT exon complement(15527256..15527681) FT /note="GENSCAN prediction, score = 36.85" FT repeat_region complement(15526843..15526935) FT /rpt_family="ALU" FT /note="91% identity: matches 1..93 of consensus" FT repeat_region 15526831..15526935 FT /rpt_family="L1" FT /note="84% identity: matches 831..935 of consensus" FT exon 15526847..15526875 FT /note="XPOUND prediction, score = 0.311" FT exon 15526780..15526793 FT /note="XPOUND prediction, score = 0.352" FT repeat_region complement(15526087..15526239) FT /rpt_family="atatataattaaatatt repeat" FT /rpt_type=TANDEM FT /note="homology = 66.0%, counts = 9" FT exon complement(15524574..15524759) FT /note="GENSCAN prediction, score = 3.21" FT exon 15524443..15524507 FT /note="XPOUND prediction, score = 0.503" FT repeat_region 15524230..15524349 FT /rpt_family="L1" FT /note="82% identity: matches 305..424 of consensus" FT repeat_region complement(15524230..15524345) FT /rpt_family="ALU" FT /note="87% identity: matches 1286..1401 of consensus" FT repeat_region 15524108..15524226 FT /rpt_family="L1" FT /note="87% identity: matches 167..285 of consensus" FT repeat_region complement(15524104..15524226) FT /rpt_family="ALU" FT /note="91% identity: matches 157..279 of consensus" FT repeat_region complement(15524083..15524103) FT /note="TAAA repeat" FT exon 15523813..15523835 FT /note="XPOUND prediction, score = 0.479" FT repeat_region complement(15521889..15521937) FT /rpt_type=INVERTED FT /note="IR31, 75% complementary to IR31' (115235..115283)" FT exon 15521874..15521896 FT /note="XPOUND prediction, score = 0.296" FT repeat_region 15521466..15521515 FT /rpt_family="MER2" FT /note="90% identity: matches 131..180 of consensus" FT exon complement(15521278..15521353) FT /note="MZEF prediction, score = 0.899" FT repeat_region complement(15521117..15521165) FT /rpt_type=INVERTED FT /note="IR31', 75% complementary to IR31 (114463..114511)" FT repeat_region complement(15520660..15520767) FT /rpt_type=INVERTED FT /note="IR33, 82% complementary to IR33' (117168..117273)" FT repeat_region 15520483..15520743 FT /rpt_family="ALU" FT /note="88% identity: matches 10..268 of consensus" FT repeat_region complement(15520498..15520741) FT /rpt_family="L1" FT /note="84% identity: matches 174..413 of consensus" FT repeat_region 15519153..15519232 FT /rpt_family="L1" FT /note="87% identity: matches 176..255 of consensus" FT repeat_region complement(15519138..15519232) FT /rpt_family="ALU" FT /note="90% identity: matches 187..281 of consensus" FT repeat_region complement(15519127..15519232) FT /rpt_type=INVERTED FT /note="IR33', 82% complementary to IR33 (115633..115740)" FT repeat_region complement(15519089..15519136) FT /rpt_family="aaaaca repeat" FT /rpt_type=TANDEM FT /note="homology = 85.4%, counts = 8" FT repeat_region complement(15519097..15519110) FT /note="AACA repeat" FT exon complement(15518832..15518862) FT /note="MZEF prediction, score = 0.751" FT repeat_region complement(15518646..15518709) FT /rpt_family="ALU" FT /note="89% identity: matches 6..69 of consensus" FT repeat_region 15518669..15518704 FT /rpt_family="MIR" FT /note="97% identity: matches 4..39 of consensus" FT repeat_region complement(15518449..15518536) FT /rpt_family="L1" FT /note="87% identity: matches 366..453 of consensus" FT exon 15518116..15518126 FT /note="XPOUND prediction, score = 0.210" FT exon complement(15518019..15518108) FT /note="MZEF prediction, score = 0.597" FT exon complement(15518035..15518107) FT /note="GENSCAN prediction, score = 4.18" FT repeat_region complement(15518031..15518087) FT /rpt_family="L1" FT /note="92% identity: matches 78..134 of consensus" FT exon 15518077..15518082 FT /note="XPOUND prediction, score = 0.238" FT repeat_region complement(15517980..15518042) FT /rpt_family="L1" FT /note="88% identity: matches 51..112 of consensus" FT repeat_region 15517835..15517918 FT /rpt_family="L1" FT /note="84% identity: matches 108..191 of consensus" FT repeat_region complement(15517815..15517881) FT /rpt_family="L1" FT /note="92% identity: matches 49..116 of consensus" FT repeat_region complement(15517161..15517225) FT /rpt_family="ALU" FT /note="92% identity: matches 38..101 of consensus" FT repeat_region complement(15516977..15517065) FT /rpt_family="ALU" FT /note="87% identity: matches 184..271 of consensus" FT repeat_region complement(15516932..15516973) FT /note="AAT repeat" FT repeat_region complement(15516926..15516973) FT /rpt_family="aat repeat" FT /rpt_type=TANDEM FT /note="homology = 95.8%, counts = 16" FT repeat_region complement(15515563..15515675) FT /rpt_family="ALU" FT /note="85% identity: matches 5..117 of consensus" FT repeat_region complement(15515386..15515675) FT /rpt_type=INVERTED FT /note="IR34, 81% complementary to IR34' (122125..122411)" FT exon 15515585..15515594 FT /note="XPOUND prediction, score = 0.225" FT exon 15515562..15515571 FT /note="XPOUND prediction, score = 0.360" FT repeat_region complement(15515413..15515543) FT /rpt_family="ALU" FT /note="92% identity: matches 877..1007 of consensus" FT repeat_region 15515396..15515532 FT /rpt_family="L1" FT /note="88% identity: matches 161..297 of consensus" FT exon 15515254..15515351 FT /note="MZEF prediction, score = 0.546" FT repeat_region complement(15515244..15515350) FT /rpt_family="ALU" FT /note="89% identity: matches 478..584 of consensus" FT repeat_region 15515244..15515306 FT /rpt_family="L1" FT /note="92% identity: matches 469..531 of consensus" FT repeat_region complement(15515079..15515216) FT /rpt_family="ALU" FT /note="88% identity: matches 147..284 of consensus" FT repeat_region 15515079..15515208 FT /rpt_family="L1" FT /note="83% identity: matches 245..374 of consensus" FT exon 15514815..15514857 FT /note="XPOUND prediction, score = 0.345" FT repeat_region complement(15513989..15514275) FT /rpt_type=INVERTED FT /note="IR34', 81% complementary to IR34 (120725..121014)" FT repeat_region complement(15513999..15514259) FT /rpt_family="L1" FT /note="84% identity: matches 167..424 of consensus" FT repeat_region 15513986..15514259 FT /rpt_family="ALU" FT /note="89% identity: matches 1..272 of consensus" FT exon complement(15513705..15513832) FT /note="MZEF prediction, score = 0.989" FT repeat_region complement(15513151..15513195) FT /rpt_family="tcccc repeat" FT /rpt_type=TANDEM FT /note="homology = 84.4%, counts = 9" FT repeat_region complement(15513166..15513188) FT /note="CCCTC repeat" FT exon 15513024..15513045 FT /note="XPOUND prediction, score = 0.380" FT exon 15511664..15511672 FT /note="XPOUND prediction, score = 0.215" FT misc_feature complement(15510177..15511338) FT /note="CpG_island (%GC=69.9, o/e=0.88, #CpGs=131)" FT exon 15511132..15511218 FT /note="XPOUND prediction, score = 0.325" FT exon 15510670..15511076 FT /note="XPOUND prediction, score = 0.822" FT exon complement(15510815..15511015) FT /note="GENSCAN prediction, score = 15.44" FT repeat_region complement(15510936..15510955) FT /note="CGG repeat" FT exon 15510432..15510546 FT /note="XPOUND prediction, score = 0.265" FT exon complement(15510115..15510279) FT /note="XPOUND prediction, score = 0.460" FT exon 15509872..15509919 FT /note="MZEF prediction, score = 0.501" FT exon complement(15509695..15509767) FT /note="MZEF prediction, score = 0.716" FT exon 15509593..15509652 FT /note="MZEF prediction, score = 0.659" FT exon 15509439..15509493 FT /note="MZEF prediction, score = 0.506" FT repeat_region 15507546..15507626 FT /rpt_family="ALU" FT /note="90% identity: matches 193..273 of consensus" FT repeat_region complement(15507546..15507626) FT /rpt_family="L1" FT /note="88% identity: matches 170..250 of consensus" FT repeat_region 15507371..15507533 FT /rpt_family="ALU" FT /note="88% identity: matches 6..168 of consensus" FT repeat_region complement(15507380..15507525) FT /rpt_family="L1" FT /note="86% identity: matches 281..424 of consensus" FT exon complement(15507151..15507222) FT /note="MZEF prediction, score = 0.783" FT exon 15506906..15507018 FT /note="MZEF prediction, score = 0.549" FT exon complement(15506559..15506635) FT /note="GENSCAN prediction, score = 5.59" FT /note="MZEF prediction, score = 1.000" FT exon complement(15506036..15506196) FT /note="MZEF prediction, score = 0.845" FT exon complement(15506168..15506195) FT /note="XPOUND prediction, score = 0.582" FT repeat_region complement(15504989..15505225) FT /rpt_family="ALU" FT /note="82% identity: matches 10..248 of consensus" FT repeat_region 15505099..15505213 FT /rpt_family="L1" FT /note="82% identity: matches 305..417 of consensus" FT repeat_region complement(15504989..15505207) FT /rpt_type=INVERTED FT /note="IR35, 77% complementary to IR35' (131700..131919)" FT repeat_region complement(15504481..15504756) FT /rpt_type=INVERTED FT /note="IR36, 84% complementary to IR36' (132385..132659)" FT repeat_region complement(15504489..15504734) FT /rpt_family="L1" FT /note="91% identity: matches 245..490 of consensus" FT repeat_region 15504487..15504734 FT /rpt_family="ALU" FT /note="93% identity: matches 6..253 of consensus" FT repeat_region complement(15504481..15504700) FT /rpt_type=INVERTED FT /note="IR35', 77% complementary to IR35 (131193..131411)" FT repeat_region complement(15503738..15504042) FT /rpt_type=INVERTED FT /note="IR37, 77% complementary to IR37' (133012..133317)" FT repeat_region complement(15503763..15504038) FT /rpt_family="ALU" FT /note="87% identity: matches 4..278 of consensus" FT repeat_region 15503763..15504037 FT /rpt_family="L1" FT /note="84% identity: matches 245..521 of consensus" FT exon 15503764..15504022 FT /note="MZEF prediction, score = 0.787" FT repeat_region complement(15503741..15504015) FT /rpt_type=INVERTED FT /note="IR36', 84% complementary to IR36 (131644..131919)" FT repeat_region complement(15503494..15503510) FT /note="TTA repeat" FT repeat_region 15503393..15503465 FT /rpt_family="ALU" FT /note="87% identity: matches 156..228 of consensus" FT repeat_region complement(15503083..15503388) FT /rpt_type=INVERTED FT /note="IR37', 77% complementary to IR37 (132358..132662)" FT repeat_region complement(15503104..15503361) FT /rpt_family="L1" FT /note="86% identity: matches 163..417 of consensus" FT repeat_region 15503104..15503350 FT /rpt_family="ALU" FT /note="88% identity: matches 157..403 of consensus" FT exon complement(15503105..15503200) FT /note="MZEF prediction, score = 0.697" FT exon complement(15502473..15502569) FT /note="MZEF prediction, score = 0.608" FT repeat_region complement(15502514..15502549) FT /rpt_family="ALU" FT /note="100% identity: matches 129..164 of consensus" FT repeat_region complement(15502187..15502238) FT /rpt_family="MER2" FT /note="92% identity: matches 27..78 of consensus" FT repeat_region complement(15501974..15502099) FT /rpt_family="MER1" FT /note="84% identity: matches 274..399 of consensus" FT repeat_region complement(15501839..15501865) FT /note="TA repeat" FT repeat_region complement(15501826..15501865) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 85.0%, counts = 20" FT repeat_region complement(15501785..15501835) FT /rpt_family="MER2" FT /note="90% identity: matches 203..253 of consensus" FT exon complement(15501750..15501823) FT /note="MZEF prediction, score = 0.657" FT exon 15501553..15501587 FT /note="MZEF prediction, score = 0.668" FT exon complement(15500621..15500671) FT /note="MZEF prediction, score = 0.574" FT repeat_region complement(15500188..15500468) FT /rpt_family="L1" FT /note="84% identity: matches 245..521 of consensus" FT repeat_region 15500187..15500468 FT /rpt_family="ALU" FT /note="87% identity: matches 5..282 of consensus" FT repeat_region 15499590..15499873 FT /rpt_family="ALU" FT /note="85% identity: matches 1..283 of consensus" FT repeat_region complement(15499612..15499858) FT /rpt_family="L1" FT /note="83% identity: matches 174..416 of consensus" FT exon complement(15499407..15499426) FT /note="XPOUND prediction, score = 0.849" FT repeat_region complement(15498419..15498434) FT /note="TTTTG repeat" FT repeat_region complement(15498161..15498429) FT /rpt_type=INVERTED FT /note="IR38, 82% complementary to IR38' (138807..139076)" FT repeat_region 15498161..15498410 FT /rpt_family="ALU" FT /note="85% identity: matches 29..275 of consensus" FT repeat_region complement(15498161..15498281) FT /rpt_family="L1" FT /note="88% identity: matches 444..567 of consensus" FT repeat_region 15497429..15497617 FT /rpt_family="L1" FT /note="87% identity: matches 331..521 of consensus" FT repeat_region complement(15497340..15497612) FT /rpt_family="ALU" FT /note="88% identity: matches 10..281 of consensus" FT repeat_region complement(15497324..15497593) FT /rpt_type=INVERTED FT /note="IR38', 82% complementary to IR38 (137971..138239)" FT repeat_region 15496917..15496956 FT /rpt_family="L1" FT /note="95% identity: matches 138..177 of consensus" FT repeat_region complement(15494593..15494605) FT /note="TG repeat" FT repeat_region 15494288..15494563 FT /rpt_family="ALU" FT /note="88% identity: matches 6..286 of consensus" FT repeat_region complement(15494391..15494498) FT /rpt_family="L1" FT /note="88% identity: matches 309..419 of consensus" FT exon 15493863..15494016 FT /note="MZEF prediction, score = 0.811" FT repeat_region complement(15493850..15493899) FT /rpt_family="THE" FT /note="92% identity: matches 1..50 of consensus" FT repeat_region complement(15493549..15493711) FT /rpt_family="THE" FT /note="87% identity: matches 99..261 of consensus" FT repeat_region complement(15493159..15493546) FT /rpt_family="THR" FT /note="86% identity: matches 1..388 of consensus" FT exon complement(15493258..15493531) FT /note="GENSCAN prediction, score = 4.62" FT exon complement(15493296..15493399) FT /note="XPOUND prediction, score = 0.809" FT repeat_region complement(15493072..15493133) FT /rpt_family="THR" FT /note="91% identity: matches 453..514 of consensus" FT repeat_region complement(15492497..15492930) FT /rpt_family="THR" FT /note="81% identity: matches 632..1071 of consensus" FT exon complement(15492707..15492918) FT /note="GENSCAN prediction, score = 3.79" FT exon complement(15492659..15492738) FT /note="XPOUND prediction, score = 0.449" FT exon complement(15492474..15492541) FT /note="XPOUND prediction, score = 0.495" FT repeat_region complement(15492379..15492435) FT /rpt_family="THR" FT /note="89% identity: matches 53..109 of consensus" FT repeat_region complement(15492077..15492314) FT /rpt_family="THR" FT /note="87% identity: matches 914..1144 of consensus" FT repeat_region complement(15492005..15492055) FT /rpt_family="THE" FT /note="90% identity: matches 1..51 of consensus" FT exon complement(15491971..15491995) FT /note="XPOUND prediction, score = 0.294" FT repeat_region complement(15491716..15491863) FT /rpt_family="THE" FT /note="91% identity: matches 104..251 of consensus" FT repeat_region 15490417..15490680 FT /rpt_family="ALU" FT /note="90% identity: matches 18..278 of consensus" FT repeat_region complement(15490417..15490674) FT /rpt_family="L1" FT /note="87% identity: matches 167..420 of consensus" FT exon complement(15489984..15490122) FT /note="GENSCAN prediction, score = 3.35" FT exon complement(15489984..15490111) FT /note="MZEF prediction, score = 0.987" FT repeat_region complement(15489632..15489647) FT /note="TTAA repeat" FT repeat_region complement(15489346..15489584) FT /rpt_family="L1" FT /note="85% identity: matches 182..416 of consensus" FT repeat_region 15489346..15489583 FT /rpt_family="ALU" FT /note="87% identity: matches 479..715 of consensus" FT repeat_region 15488749..15489013 FT /rpt_family="ALU" FT /note="92% identity: matches 314..578 of consensus" FT repeat_region complement(15488749..15489013) FT /rpt_family="L1" FT /note="89% identity: matches 250..515 of consensus" FT repeat_region complement(15488623..15488738) FT /rpt_family="L1" FT /note="91% identity: matches 390..506 of consensus" FT repeat_region 15488623..15488734 FT /rpt_family="ALU" FT /note="92% identity: matches 310..421 of consensus" FT exon 15488549..15488701 FT /note="MZEF prediction, score = 0.570" FT repeat_region complement(15488226..15488350) FT /rpt_type=INVERTED FT /note="IR39, 76% complementary to IR39' (149284..149408)" FT repeat_region complement(15488328..15488342) FT /note="TTG repeat" FT repeat_region complement(15488231..15488330) FT /rpt_family="L1" FT /note="86% identity: matches 159..259 of consensus" FT repeat_region 15488067..15488328 FT /rpt_family="ALU" FT /note="87% identity: matches 20..278 of consensus" FT repeat_region complement(15488067..15488180) FT /rpt_family="L1" FT /note="92% identity: matches 307..418 of consensus" FT repeat_region 15487555..15487590 FT /rpt_family="ALU" FT /note="97% identity: matches 528..563 of consensus" FT repeat_region 15487322..15487549 FT /rpt_family="ALU" FT /note="88% identity: matches 12..238 of consensus" FT repeat_region complement(15487322..15487499) FT /rpt_family="L1" FT /note="83% identity: matches 338..515 of consensus" FT exon complement(15487030..15487184) FT /note="MZEF prediction, score = 0.679" FT repeat_region 15487113..15487179 FT /rpt_family="ALU" FT /note="86% identity: matches 680..746 of consensus" FT repeat_region complement(15486992..15487116) FT /rpt_type=INVERTED FT /note="IR39', 76% complementary to IR39 (148050..148174)" FT exon complement(15486825..15486945) FT /note="MZEF prediction, score = 0.997" FT exon complement(15486825..15486929) FT /note="GENSCAN prediction, score = 8.69" FT exon complement(15486825..15486903) FT /note="XPOUND prediction, score = 0.286" FT exon complement(15486575..15486585) FT /note="XPOUND prediction, score = 0.253" FT exon complement(15486004..15486066) FT /note="GENSCAN prediction, score = 3.40" FT /note="MZEF prediction, score = 0.992" FT exon complement(15486004..15486044) FT /note="XPOUND prediction, score = 0.328" FT repeat_region complement(15485606..15485621) FT /note="TGT repeat" FT exon complement(15485415..15485452) FT /note="XPOUND prediction, score = 0.750" FT repeat_region 15484784..15484909 FT /rpt_family="ALU" FT /note="89% identity: matches 153..278 of consensus" FT repeat_region complement(15484783..15484901) FT /rpt_family="L1" FT /note="84% identity: matches 170..288 of consensus" FT repeat_region complement(15484737..15484750) FT /note="TTTTG repeat" FT repeat_region 15484471..15484697 FT /rpt_family="ALU" FT /note="83% identity: matches 29..253 of consensus" FT repeat_region complement(15484626..15484692) FT /rpt_family="L1" FT /note="91% identity: matches 193..259 of consensus" FT repeat_region complement(15484471..15484568) FT /rpt_family="L1" FT /note="88% identity: matches 469..566 of consensus" FT exon 15484452..15484541 FT /note="MZEF prediction, score = 0.779" FT repeat_region 15484324..15484469 FT /rpt_family="ALU" FT /note="87% identity: matches 10..155 of consensus" FT repeat_region complement(15484367..15484447) FT /rpt_family="L1" FT /note="92% identity: matches 464..544 of consensus" FT repeat_region complement(15484302..15484314) FT /note="TA repeat" FT repeat_region complement(15483864..15484114) FT /rpt_family="L1" FT /note="83% identity: matches 176..418 of consensus" FT repeat_region 15483746..15484100 FT /rpt_family="ALU" FT /note="85% identity: matches 37..388 of consensus" FT repeat_region complement(15483783..15483878) FT /rpt_family="L1" FT /note="85% identity: matches 765..860 of consensus" FT exon complement(15483176..15483198) FT /note="XPOUND prediction, score = 0.340" FT repeat_region complement(15482128..15482139) FT /note="TG repeat" FT repeat_region complement(15481584..15481681) FT /rpt_family="L1" FT /note="86% identity: matches 161..258 of consensus" FT repeat_region 15481552..15481681 FT /rpt_family="ALU" FT /note="86% identity: matches 155..284 of consensus" FT repeat_region 15481478..15481545 FT /rpt_family="ALU" FT /note="97% identity: matches 202..269 of consensus" FT repeat_region complement(15481478..15481544) FT /rpt_family="L1" FT /note="95% identity: matches 464..530 of consensus" FT repeat_region complement(15480920..15480938) FT /note="TTTTG repeat" FT repeat_region complement(15480799..15480911) FT /rpt_family="L1" FT /note="83% identity: matches 168..279 of consensus" FT repeat_region 15480654..15480904 FT /rpt_family="ALU" FT /note="83% identity: matches 16..269 of consensus" FT repeat_region complement(15480638..15480762) FT /rpt_family="L1" FT /note="84% identity: matches 472..596 of consensus" FT exon 15480638..15480688 FT /note="MZEF prediction, score = 0.583" FT exon 15479718..15479770 FT /note="MZEF prediction, score = 0.528" FT exon complement(15479589..15479685) FT /note="GENSCAN prediction, score = 2.16" FT /note="MZEF prediction, score = 0.990" FT exon complement(15478507..15478550) FT /note="MZEF prediction, score = 0.801" FT repeat_region 15478084..15478123 FT /rpt_family="ALU" FT /note="95% identity: matches 241..280 of consensus" FT repeat_region 15477984..15478026 FT /rpt_family="ALU" FT /note="93% identity: matches 278..320 of consensus" FT repeat_region 15477865..15477947 FT /rpt_family="ALU" FT /note="84% identity: matches 12..94 of consensus" FT exon complement(15474007..15474235) FT /note="GENSCAN prediction, score = 21.25" FT /note="MZEF prediction, score = 1.000" FT exon complement(15474131..15474175) FT /note="XPOUND prediction, score = 0.226" FT exon complement(15474007..15474048) FT /note="XPOUND prediction, score = 0.470" FT repeat_region complement(15473953..15473963) FT /note="TA repeat" FT repeat_region complement(15473901..15473955) FT /rpt_family="ttttttttgtt repeat" FT /rpt_type=TANDEM FT /note="homology = 89.1%, counts = 5" FT repeat_region complement(15473637..15473901) FT /rpt_family="L1" FT /note="82% identity: matches 158..418 of consensus" FT repeat_region 15473624..15473898 FT /rpt_family="ALU" FT /note="97% identity: matches 1..275 of consensus" FT exon complement(15472630..15472748) FT /note="GENSCAN prediction, score = 6.54" FT /note="MZEF prediction, score = 0.908" FT exon complement(15472630..15472705) FT /note="XPOUND prediction, score = 0.398" FT repeat_region complement(15471235..15471248) FT /note="TATTG repeat" FT exon complement(15469936..15469991) FT /note="GENSCAN prediction, score = 0.40" FT /note="MZEF prediction, score = 0.997" FT exon complement(15468955..15469056) FT /note="GENSCAN prediction, score = 8.55" FT /note="MZEF prediction, score = 0.980" FT exon complement(15468628..15468877) FT /note="MZEF prediction, score = 0.972" FT exon complement(15468628..15468841) FT /note="GENSCAN prediction, score = 10.07" FT repeat_region complement(15467851..15468118) FT /rpt_family="L1" FT /note="82% identity: matches 162..424 of consensus" FT repeat_region 15467842..15468118 FT /rpt_family="ALU" FT /note="89% identity: matches 6..282 of consensus" FT misc_feature 15636400..15740762 FT /note="annotated region of clone" FT CDS join(complement(AL513423.3:72273..72313), FT complement(AL513423.3:64643..64778), FT complement(AL513423.3:57379..57553), FT complement(AL513423.3:44846..45036), FT complement(AL513423.3:42230..42361), FT complement(AL513423.3:12989..13135),15657125..15657217, FT 15666161..15666321,15678756..15678894,15695233..15695335, FT 15721767..15721873,15723679..15723744,15724774..15724974, FT 15727867..15728034,15729608..15729796, FT AL359877.12:5509..6013,AL359877.12:6751..6867, FT AL359877.12:38836..39062,AL359877.12:40204..40386, FT AL359877.12:45745..45930,AL359877.12:107938..108083, FT AL359877.12:110129..110183,AL359877.12:135768..135899, FT AL592153.6:19498..19650,AL592153.6:70837..71064) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-001" FT /standard_name="OTTHUMP00000021073" FT /product="chromosome 9 open reading frame 93" FT /note="match: proteins: Tr:Q8BLX2 Tr:Q9CUL1" FT /protein_id="CAI95333.1" FT /translation="MNLNTSSNTGDTQRLKIASLDVKQILKNETELDITDNLRKKLHWA FT KKEKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEE FT RLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCN FT REYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEFRLQEEQWEAERRELQF FT IVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVR FT KLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVE FT SAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSEL FT QEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGIHKDKDKPPSFSVVLERL FT RRTLTDYQNKLEDASNEEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKC FT ADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQH FT LVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTM FT RELQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKFQEIAEKNME FT KLNHIEKSHEQLVLENSHFKKLLSQTQREQMSLLAACALMAGALYPLYSRSCALSTQRD FT FLQEQVNTFELFKLEIRTLAQALSTVEEKKQEEAKMKKKTFKGLIRIFRKGVIAVLAAN FT RLKILGQSCASLFTWMESFKEGIGMLVCTGEPQDKHKFPKHQKEQLRCLQALSWLTSSD FT LLAAIISSMAELQDVIGKADPNSRICGHLLIGAAKNSFAKLMDKISLVMECIPLHSSRS FT ITYVEKDSLVQRLAHGLHKVNTLALKYGLRGHVPITKSTASLQKQILGFTQRLHAAEVE FT RRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHEKFESACEELNNALLR FT EEQAQMLLNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQ FT LNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENTLHKVRDQISLSWS FT AASRNDFTLQLPKLHLETFAMEGLKGGPEVVACQAMIKSFMDVYQLASTRIMTLEKEMT FT SHRSHIAALKSELHTACLRENASLQSIGSRDHSNLSIPSRAPLPADTTGIGDFLPLKAE FT LDTTYTFLKETFINTVPHALTSSHSSPVTMSANANRPTQIGL" FT mRNA join(complement(AL513423.3:83100..83316), FT complement(AL513423.3:72273..72424), FT complement(AL513423.3:64643..64778), FT complement(AL513423.3:57379..57553), FT complement(AL513423.3:44846..45036), FT complement(AL513423.3:42230..42361), FT complement(AL513423.3:12989..13135),15657125..15657217, FT 15666161..15666321,15678756..15678894,15695233..15695335, FT 15721767..15721873,15723679..15723744,15724774..15724974, FT 15727867..15728034,15729608..15729796, FT AL359877.12:5509..6013,AL359877.12:6751..6867, FT AL359877.12:38836..39062,AL359877.12:40204..40386, FT AL359877.12:45745..45930,AL359877.12:107938..108083, FT AL359877.12:110129..110183,AL359877.12:135768..135899, FT AL592153.6:19498..19650,AL592153.6:70837..73267) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-001" FT /product="chromosome 9 open reading frame 93" FT /note="match: cDNAs: Em:AK015563.1 Em:AK041005.1 FT Em:AK128581.1 Em:AY422473.1" FT /note="match: ESTs: Em:AL552779.1 Em:BX344223.1" FT misc_feature 15736763 FT /note="Clone_left_end: RP11-179A4" FT misc_feature 15740763..15902770 FT /note="annotated region of clone" FT CDS join(<15744503..15744775,15745513..15745629, FT 15777598..15777824,15778966..15779148,15784507..15784692, FT 15846700..15846845,15848891..15848945,15874530..15874667, FT 15883072..15883161) FT /codon_start=3 FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-003" FT /standard_name="OTTHUMP00000022795" FT /product="chromosome 9 open reading frame 93" FT /note="match: proteins: Sw:Q6TFL3" FT /protein_id="CAI39676.1" FT /translation="FELFKLEIRTLAQALSTVEEKKQEEAKMKKKTFKGLIRIFRKGVI FT AVLAANRLKILGQSCASLFTWMESFKEGIGMLVCTGEPQDKHKFPKHQKEQLRCLQALS FT WLTSSDLLAAIISSMAELQDVIGKADPNSRICGHLLIGAAKNSFAKLMDKISLVMECIP FT LHSSRSITYVEKDSLVQRLAHGLHKVNTLALKYGLRGHVPITKSTASLQKQILGFTQRL FT HAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHEKFESACEEL FT NNALLREEQAQMLLNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRK FT DQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENTLHKVRDQ FT ISLSWSAASRNDFTLQLPKLHLETFAMEGLKGGPEVVACQVRVRVQWCDHSSLQSQMPG FT LKQSSCLSLLST" FT mRNA join(<15744503..15744775,15745513..15745629, FT 15777598..15777824,15778966..15779148,15784507..15784692, FT 15846700..15846845,15848891..15848945,15874530..15874667, FT 15883072..15883189,15885512..15885586,15885688..15886803) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-003" FT /product="chromosome 9 open reading frame 93" FT /note="match: cDNAs: Em:AK096586.1" FT misc_feature 15759010 FT /note="Clone_right_end: RP11-778P13" FT misc_feature 15765829 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 230bp by restriction digest data" FT misc_feature 15772965..15773046 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT CDS join(<15777766..15777824,15778966..15779148, FT 15784507..15784692,15846700..15846845,15848891..15848945, FT 15874530..15874673) FT /codon_start=3 FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-008" FT /standard_name="OTTHUMP00000070336" FT /product="chromosome 9 open reading frame 93" FT /protein_id="CAI39677.1" FT /translation="HKVNTLALKYGLRGHVPITKSTASLQKQILGFTQRLHAAEVERRS FT LRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHEKFESACEELNNALLREEQ FT AQMLLNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNR FT HLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENTLHKVRDQISLSWSAAS FT RNDFTLQLPKLHLETFAMEGLKGGPEVVACQVRV" FT mRNA join(<15777766..15777824,15778966..15779148, FT 15784507..15784692,15846700..15846845,15848891..15848945, FT 15874530..15876081) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-008" FT /product="chromosome 9 open reading frame 93" FT /note="match: ESTs: Em:AI829655.1 Em:AW297965.1 FT Em:BG181842.1 Em:BG214863.1" FT /note="match: cDNAs: Em:AK094506.1" FT CDS join(complement(AL513423.3:72273..72313), FT complement(AL513423.3:64643..64778), FT complement(AL513423.3:57379..57553), FT complement(AL513423.3:44846..45036), FT complement(AL513423.3:42230..42361), FT complement(AL513423.3:12989..13135), FT AL662788.7:22726..22818,AL662788.7:31762..31922, FT AL662788.7:44357..44495,AL662788.7:60834..60936, FT AL662788.7:87368..87474,AL662788.7:89280..89345, FT AL662788.7:90375..90575,AL662788.7:93468..93635, FT AL662788.7:95209..95397,15744271..15744775, FT 15745513..15745629,15777598..15777824,15778966..15779148, FT 15784507..15784692,15846700..15846845,15848891..15848945, FT 15874530..15874661,AL592153.6:19498..19650, FT AL592153.6:70837..71064) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-001" FT /standard_name="OTTHUMP00000021073" FT /product="chromosome 9 open reading frame 93" FT /note="match: proteins: Tr:Q8BLX2 Tr:Q9CUL1" FT /protein_id="CAI94977.1" FT /translation="MNLNTSSNTGDTQRLKIASLDVKQILKNETELDITDNLRKKLHWA FT KKEKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEE FT RLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCN FT REYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEFRLQEEQWEAERRELQF FT IVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVR FT KLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVE FT SAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSEL FT QEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGIHKDKDKPPSFSVVLERL FT RRTLTDYQNKLEDASNEEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKC FT ADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQH FT LVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTM FT RELQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKFQEIAEKNME FT KLNHIEKSHEQLVLENSHFKKLLSQTQREQMSLLAACALMAGALYPLYSRSCALSTQRD FT FLQEQVNTFELFKLEIRTLAQALSTVEEKKQEEAKMKKKTFKGLIRIFRKGVIAVLAAN FT RLKILGQSCASLFTWMESFKEGIGMLVCTGEPQDKHKFPKHQKEQLRCLQALSWLTSSD FT LLAAIISSMAELQDVIGKADPNSRICGHLLIGAAKNSFAKLMDKISLVMECIPLHSSRS FT ITYVEKDSLVQRLAHGLHKVNTLALKYGLRGHVPITKSTASLQKQILGFTQRLHAAEVE FT RRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHEKFESACEELNNALLR FT EEQAQMLLNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQ FT LNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENTLHKVRDQISLSWS FT AASRNDFTLQLPKLHLETFAMEGLKGGPEVVACQAMIKSFMDVYQLASTRIMTLEKEMT FT SHRSHIAALKSELHTACLRENASLQSIGSRDHSNLSIPSRAPLPADTTGIGDFLPLKAE FT LDTTYTFLKETFINTVPHALTSSHSSPVTMSANANRPTQIGL" FT mRNA join(complement(AL513423.3:83100..83316), FT complement(AL513423.3:72273..72424), FT complement(AL513423.3:64643..64778), FT complement(AL513423.3:57379..57553), FT complement(AL513423.3:44846..45036), FT complement(AL513423.3:42230..42361), FT complement(AL513423.3:12989..13135), FT AL662788.7:22726..22818,AL662788.7:31762..31922, FT AL662788.7:44357..44495,AL662788.7:60834..60936, FT AL662788.7:87368..87474,AL662788.7:89280..89345, FT AL662788.7:90375..90575,AL662788.7:93468..93635, FT AL662788.7:95209..95397,15744271..15744775, FT 15745513..15745629,15777598..15777824,15778966..15779148, FT 15784507..15784692,15846700..15846845,15848891..15848945, FT 15874530..15874661,AL592153.6:19498..19650, FT AL592153.6:70837..73267) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-001" FT /product="chromosome 9 open reading frame 93" FT /note="match: ESTs: Em:AL552779.1 Em:BX344223.1" FT /note="match: cDNAs: Em:AK015563.1 Em:AK041005.1 FT Em:AK128581.1 Em:AY422473.1" FT mRNA join(15845637..15845699,15846700..15846845, FT 15848891..15848945,15874530..15874661, FT AL592153.6:19498..19650,AL592153.6:70837..71125) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-005" FT /product="chromosome 9 open reading frame 93" FT /note="match: ESTs: Em:BG194118.1" FT /note="match: cDNAs: Em:AF440401.1" FT mRNA join(15850224..15850309,15874530..15874661, FT AL592153.6:19498..19650,AL592153.6:70837..70963) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-006" FT /product="chromosome 9 open reading frame 93" FT /note="match: ESTs: Em:N42709.1" FT mRNA join(15874539..15874661,AL592153.6:19498..19650, FT AL592153.6:21339..21430,AL160053.15:13426..13679, FT AL160053.15:13833..14002,AL160053.15:26551..26619, FT AL160053.15:27187..27300,AL160053.15:33892..34014, FT AL160053.15:51740..52757) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-004" FT /product="chromosome 9 open reading frame 93" FT /note="match: ESTs: Em:BG196405.1" FT /note="match: cDNAs: Em:AL832443.1" FT misc_feature 15881016 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 90bp by restriction digest data" FT misc_feature 15882126 FT /note="Clone_left_end: RP11-58K1" FT mRNA join(15887793..15888086,15888981..15889099, FT AL592153.6:19498..19562) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-007" FT /product="chromosome 9 open reading frame 93" FT /note="match: ESTs: Em:AA393656.1" FT misc_feature 15900770 FT /note="Clone_right_end: RP11-179A4" FT misc_feature 15902771..16008904 FT /note="annotated region of clone" FT CDS join(complement(AL513423.3:72273..72313), FT complement(AL513423.3:64643..64778), FT complement(AL513423.3:57379..57553), FT complement(AL513423.3:44846..45036), FT complement(AL513423.3:42230..42361), FT complement(AL513423.3:12989..13135), FT AL662788.7:22726..22818,AL662788.7:31762..31922, FT AL662788.7:44357..44495,AL662788.7:60834..60936, FT AL662788.7:87368..87474,AL662788.7:89280..89345, FT AL662788.7:90375..90575,AL662788.7:93468..93635, FT AL662788.7:95209..95397,AL359877.12:5509..6013, FT AL359877.12:6751..6867,AL359877.12:38836..39062, FT AL359877.12:40204..40386,AL359877.12:45745..45930, FT AL359877.12:107938..108083,AL359877.12:110129..110183, FT AL359877.12:135768..135899,15920268..15920420, FT 15971607..15971834) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-001" FT /standard_name="OTTHUMP00000021073" FT /product="chromosome 9 open reading frame 93" FT /note="match: proteins: Tr:Q8BLX2 Tr:Q9CUL1" FT /protein_id="CAI95316.1" FT /translation="MNLNTSSNTGDTQRLKIASLDVKQILKNETELDITDNLRKKLHWA FT KKEKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEE FT RLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCN FT REYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEFRLQEEQWEAERRELQF FT IVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVR FT KLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVE FT SAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSEL FT QEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGIHKDKDKPPSFSVVLERL FT RRTLTDYQNKLEDASNEEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKC FT ADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQH FT LVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTM FT RELQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKFQEIAEKNME FT KLNHIEKSHEQLVLENSHFKKLLSQTQREQMSLLAACALMAGALYPLYSRSCALSTQRD FT FLQEQVNTFELFKLEIRTLAQALSTVEEKKQEEAKMKKKTFKGLIRIFRKGVIAVLAAN FT RLKILGQSCASLFTWMESFKEGIGMLVCTGEPQDKHKFPKHQKEQLRCLQALSWLTSSD FT LLAAIISSMAELQDVIGKADPNSRICGHLLIGAAKNSFAKLMDKISLVMECIPLHSSRS FT ITYVEKDSLVQRLAHGLHKVNTLALKYGLRGHVPITKSTASLQKQILGFTQRLHAAEVE FT RRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHEKFESACEELNNALLR FT EEQAQMLLNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQ FT LNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENTLHKVRDQISLSWS FT AASRNDFTLQLPKLHLETFAMEGLKGGPEVVACQAMIKSFMDVYQLASTRIMTLEKEMT FT SHRSHIAALKSELHTACLRENASLQSIGSRDHSNLSIPSRAPLPADTTGIGDFLPLKAE FT LDTTYTFLKETFINTVPHALTSSHSSPVTMSANANRPTQIGL" FT polyA_signal 15974012..15974017 FT polyA_site 15974037 FT mRNA join(complement(AL513423.3:83100..83316), FT complement(AL513423.3:72273..72424), FT complement(AL513423.3:64643..64778), FT complement(AL513423.3:57379..57553), FT complement(AL513423.3:44846..45036), FT complement(AL513423.3:42230..42361), FT complement(AL513423.3:12989..13135), FT AL662788.7:22726..22818,AL662788.7:31762..31922, FT AL662788.7:44357..44495,AL662788.7:60834..60936, FT AL662788.7:87368..87474,AL662788.7:89280..89345, FT AL662788.7:90375..90575,AL662788.7:93468..93635, FT AL662788.7:95209..95397,AL359877.12:5509..6013, FT AL359877.12:6751..6867,AL359877.12:38836..39062, FT AL359877.12:40204..40386,AL359877.12:45745..45930, FT AL359877.12:107938..108083,AL359877.12:110129..110183, FT AL359877.12:135768..135899,15920268..15920420, FT 15971607..15974037) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-001" FT /product="chromosome 9 open reading frame 93" FT /note="match: cDNAs: Em:AK015563.1 Em:AK041005.1 FT Em:AK128581.1 Em:AY422473.1" FT /note="match: ESTs: Em:AL552779.1 Em:BX344223.1" FT mRNA join(AL359877.12:106875..106937,AL359877.12:107938..108083, FT AL359877.12:110129..110183,AL359877.12:135768..135899, FT 15920268..15920420,15971607..15971895) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-005" FT /product="chromosome 9 open reading frame 93" FT /note="match: cDNAs: Em:AF440401.1" FT /note="match: ESTs: Em:BG194118.1" FT mRNA join(AL359877.12:111462..111547,AL359877.12:135768..135899, FT 15920268..15920420,15971607..15971733) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-006" FT /product="chromosome 9 open reading frame 93" FT /note="match: ESTs: Em:N42709.1" FT mRNA join(AL359877.12:135777..135899,15920268..15920420, FT 15922109..15922200,AL160053.15:13426..13679, FT AL160053.15:13833..14002,AL160053.15:26551..26619, FT AL160053.15:27187..27300,AL160053.15:33892..34014, FT AL160053.15:51740..52757) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-004" FT /product="chromosome 9 open reading frame 93" FT /note="match: cDNAs: Em:AL832443.1" FT /note="match: ESTs: Em:BG196405.1" FT mRNA join(AL359877.12:149031..149324,AL359877.12:150219..150337, FT 15920268..15920332) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-007" FT /product="chromosome 9 open reading frame 93" FT /note="match: ESTs: Em:AA393656.1" FT misc_feature 16008905..16181749 FT /note="annotated region of clone" FT misc_feature 16008905 FT /note="Clone_left_end: RP11-536D16" FT misc_feature 16031643 FT /note="Clone_right_end: RP11-531C18" FT mRNA join(16042796..16042884,16060644..16061318) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-009" FT /product="chromosome 9 open reading frame 93" FT /note="match: ESTs: Em:BG208303.1" FT polyA_signal 16061637..16061642 FT polyA_site 16061661 FT mRNA join(16121131..16121233,16122224..16122432) FT /locus_tag="RP11-536D16.2-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AA757387.1" FT mRNA join(AL359877.12:135777..135899,AL592153.6:19498..19650, FT AL592153.6:21339..21430,16022330..16022583, FT 16022737..16022906,16035455..16035523,16036091..16036204, FT 16042796..16042918,16060644..16061661) FT /gene="C9orf93" FT /locus_tag="RP11-518K17.1-004" FT /product="chromosome 9 open reading frame 93" FT /note="match: cDNAs: Em:AL832443.1" FT /note="match: ESTs: Em:BG196405.1" FT misc_feature 16151129 FT /note="Clone_left_end: RP11-109M15" FT misc_feature 16181749 FT /note="Clone_right_end: RP11-536D16" FT misc_feature complement(16151129..16335493) FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT repeat_region complement(16335349..16335430) FT /rpt_family="THE" FT /note="91% identity: matches 62..141 of consensus" FT repeat_region complement(16335270..16335380) FT /rpt_family="THE" FT /note="94% identity: matches 85..195 of consensus" FT exon complement(16333532..16333611) FT /note="XPOUND prediction, score = 0.375" FT exon 16333513..16333551 FT /note="XPOUND prediction, score = 0.240" FT exon 16333477..16333488 FT /note="XPOUND prediction, score = 0.212" FT repeat_region 16333116..16333171 FT /rpt_family="ALU" FT /note="91% identity: matches 369..424 of consensus" FT repeat_region 16333037..16333123 FT /rpt_family="ALU" FT /note="86% identity: matches 57..143 of consensus" FT repeat_region 16332911..16333019 FT /rpt_family="ALU" FT /note="88% identity: matches 334..442 of consensus" FT exon complement(16332828..16333015) FT /note="MZEF prediction, score = 0.982" FT repeat_region complement(16332912..16333007) FT /rpt_family="L1" FT /note="85% identity: matches 829..924 of consensus" FT exon 16332742..16332798 FT /note="XPOUND prediction, score = 0.274" FT repeat_region 16332294..16332344 FT /rpt_family="THE" FT /note="92% identity: matches 61..111 of consensus" FT repeat_region complement(16329593..16329612) FT /note="GA repeat" FT exon complement(16329292..16329329) FT /note="XPOUND prediction, score = 0.334" FT exon 16326604..16326756 FT /note="GENSCAN prediction, score = 6.37" FT exon complement(16325905..16325991) FT /note="XPOUND prediction, score = 0.273" FT exon complement(16325384..16325413) FT /note="XPOUND prediction, score = 0.203" FT repeat_region complement(16324796..16324808) FT /note="TCTT repeat" FT exon complement(16324600..16324770) FT /note="MZEF prediction, score = 0.808" FT exon complement(16323701..16323778) FT /note="XPOUND prediction, score = 0.631" FT exon complement(16323100..16323192) FT /note="XPOUND prediction, score = 0.626" FT repeat_region complement(16322775..16322789) FT /note="TTTA repeat" FT repeat_region complement(16322492..16322785) FT /rpt_type=INVERTED FT /note="IR1, 79% complementary to IR1' (13162..13453)" FT repeat_region complement(16322491..16322773) FT /rpt_family="L1" FT /note="82% identity: matches 312..597 of consensus" FT repeat_region 16322510..16322772 FT /rpt_family="ALU" FT /note="88% identity: matches 154..416 of consensus" FT repeat_region complement(16322041..16322332) FT /rpt_type=INVERTED FT /note="IR1', 79% complementary to IR1 (12709..13002)" FT repeat_region complement(16322082..16322323) FT /rpt_family="ALU" FT /note="90% identity: matches 8..249 of consensus" FT repeat_region 16322054..16322318 FT /rpt_family="L1" FT /note="84% identity: matches 162..424 of consensus" FT exon complement(16320800..16320821) FT /note="XPOUND prediction, score = 0.227" FT exon complement(16320552..16320607) FT /note="XPOUND prediction, score = 0.640" FT repeat_region 16319511..16319600 FT /rpt_family="THE" FT /note="84% identity: matches 71..160 of consensus" FT exon complement(16319489..16319523) FT /note="XPOUND prediction, score = 0.319" FT exon complement(16319348..16319402) FT /note="XPOUND prediction, score = 0.244" FT exon 16319270..16319338 FT /note="GENSCAN prediction, score = 0.90" FT exon complement(16318130..16318156) FT /note="XPOUND prediction, score = 0.382" FT exon complement(16316947..16317074) FT /note="XPOUND prediction, score = 0.422" FT exon complement(16316611..16316635) FT /note="XPOUND prediction, score = 0.325" FT repeat_region complement(16315659..16315688) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 15" FT repeat_region complement(16315659..16315683) FT /note="CA repeat" FT repeat_region complement(16315010..16315094) FT /rpt_family="L1" FT /note="87% identity: matches 175..259 of consensus" FT repeat_region 16314986..16315094 FT /rpt_family="ALU" FT /note="88% identity: matches 494..602 of consensus" FT exon complement(16313785..16313904) FT /note="MZEF prediction, score = 0.739" FT exon complement(16313819..16313857) FT /note="XPOUND prediction, score = 0.252" FT exon 16313246..16313419 FT /note="GENSCAN prediction, score = 0.95" FT exon 16313135..16313148 FT /note="XPOUND prediction, score = 0.620" FT exon 16312488..16312513 FT /note="XPOUND prediction, score = 0.232" FT exon 16312451..16312466 FT /note="XPOUND prediction, score = 0.232" FT repeat_region complement(16312237..16312260) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 12" FT repeat_region complement(16312237..16312260) FT /note="TG repeat" FT exon 16311292..16311314 FT /note="XPOUND prediction, score = 0.391" FT exon 16310927..16311068 FT /note="XPOUND prediction, score = 0.754" FT exon 16310150..16310161 FT /note="XPOUND prediction, score = 0.201" FT exon 16309928..16310121 FT /note="GENSCAN prediction, score = 0.69" FT repeat_region complement(16308378..16308653) FT /rpt_family="ALU" FT /note="89% identity: matches 1..277 of consensus" FT repeat_region 16308376..16308636 FT /rpt_family="L1" FT /note="85% identity: matches 164..421 of consensus" FT repeat_region complement(16308325..16308372) FT /rpt_family="aaaaca repeat" FT /rpt_type=TANDEM FT /note="homology = 89.6%, counts = 8" FT exon complement(16307950..16308021) FT /note="XPOUND prediction, score = 0.610" FT repeat_region complement(16307728..16307757) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 86.7%, counts = 15" FT repeat_region complement(16307728..16307741) FT /note="TG repeat" FT repeat_region 16306225..16306254 FT /rpt_family="ALU" FT /note="100% identity: matches 253..282 of consensus" FT exon complement(16305617..16305630) FT /note="XPOUND prediction, score = 0.300" FT exon complement(16305184..16305209) FT /note="XPOUND prediction, score = 0.358" FT exon complement(16302447..16302521) FT /note="XPOUND prediction, score = 0.394" FT exon 16302252..16302357 FT /note="MZEF prediction, score = 0.794" FT exon 16301549..16301610 FT /note="MZEF prediction, score = 0.580" FT repeat_region complement(16300862..16300913) FT /rpt_family="THE" FT /note="90% identity: matches 9..60 of consensus" FT repeat_region 16300516..16300563 FT /rpt_family="L1" FT /note="91% identity: matches 13..60 of consensus" FT exon complement(16300536..16300554) FT /note="XPOUND prediction, score = 0.250" FT repeat_region 16300268..16300534 FT /rpt_family="L1" FT /note="89% identity: matches 623..885 of consensus" FT repeat_region 16300203..16300262 FT /rpt_family="L1" FT /note="93% identity: matches 9..68 of consensus" FT repeat_region 16300017..16300230 FT /rpt_family="L1" FT /note="87% identity: matches 515..728 of consensus" FT repeat_region 16298881..16299932 FT /rpt_family="L1" FT /note="84% identity: matches 2670..3716 of consensus" FT repeat_region 16298757..16298829 FT /rpt_family="L1" FT /note="89% identity: matches 2533..2605 of consensus" FT repeat_region 16298065..16298663 FT /rpt_family="L1" FT /note="86% identity: matches 1855..2452 of consensus" FT exon complement(16298561..16298565) FT /note="XPOUND prediction, score = 0.200" FT exon 16298362..16298537 FT /note="GENSCAN prediction, score = 1.14" FT repeat_region 16297978..16298065 FT /rpt_family="L1" FT /note="87% identity: matches 626..713 of consensus" FT repeat_region 16297808..16297930 FT /rpt_family="L1" FT /note="81% identity: matches 3322..3444 of consensus" FT repeat_region 16297660..16297846 FT /rpt_family="L1" FT /note="86% identity: matches 192..377 of consensus" FT repeat_region complement(16297542..16297739) FT /rpt_family="tttttttgtttttttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 60.6%, counts = 11" FT repeat_region complement(16297618..16297631) FT /note="TTTG repeat" FT repeat_region 16297372..16297606 FT /rpt_family="L1" FT /note="83% identity: matches 18..252 of consensus" FT exon complement(16297425..16297467) FT /note="XPOUND prediction, score = 0.251" FT repeat_region 16297086..16297383 FT /rpt_family="L1" FT /note="86% identity: matches 468..766 of consensus" FT repeat_region 16296605..16297114 FT /rpt_family="L1" FT /note="85% identity: matches 486..1000 of consensus" FT exon complement(16296589..16296602) FT /note="XPOUND prediction, score = 0.267" FT repeat_region 16296005..16296477 FT /rpt_family="L1" FT /note="82% identity: matches 299..773 of consensus" FT exon complement(16296395..16296405) FT /note="XPOUND prediction, score = 0.240" FT repeat_region 16295776..16295998 FT /rpt_family="L1" FT /note="93% identity: matches 1..224 of consensus" FT repeat_region complement(16295680..16295758) FT /rpt_family="MER25" FT /note="89% identity: matches 1..75 of consensus" FT repeat_region 16295534..16295621 FT /rpt_family="L1" FT /note="88% identity: matches 2..89 of consensus" FT repeat_region 16295454..16295565 FT /rpt_family="L1" FT /note="87% identity: matches 1..112 of consensus" FT repeat_region complement(16294940..16294998) FT /rpt_family="MER25" FT /note="88% identity: matches 98..156 of consensus" FT exon complement(16294880..16294912) FT /note="XPOUND prediction, score = 0.704" FT repeat_region complement(16294765..16294844) FT /rpt_family="MER25" FT /note="88% identity: matches 254..333 of consensus" FT repeat_region complement(16294372..16294427) FT /rpt_family="MER25" FT /note="91% identity: matches 48..103 of consensus" FT repeat_region complement(16294100..16294310) FT /rpt_family="MER25" FT /note="85% identity: matches 100..311 of consensus" FT exon complement(16294108..16294149) FT /note="XPOUND prediction, score = 0.412" FT exon complement(16290480..16290662) FT /note="MZEF prediction, score = 0.529" FT exon complement(16288965..16289103) FT /note="XPOUND prediction, score = 0.495" FT exon 16286441..16286515 FT /note="GENSCAN prediction, score = 6.91" FT exon 16285170..16285359 FT /note="GENSCAN prediction, score = 2.69" FT repeat_region 16284591..16284950 FT /rpt_family="THE" FT /note="85% identity: matches 1..358 of consensus" FT exon 16283134..16283192 FT /note="XPOUND prediction, score = 0.320" FT exon 16283023..16283133 FT /note="GENSCAN prediction, score = 0.49" FT exon 16282957..16282963 FT /note="XPOUND prediction, score = 0.209" FT repeat_region complement(16282763..16282773) FT /note="GA repeat" FT exon 16282004..16282031 FT /note="XPOUND prediction, score = 0.526" FT exon 16281674..16281723 FT /note="XPOUND prediction, score = 0.479" FT exon 16279828..16279887 FT /note="XPOUND prediction, score = 0.816" FT repeat_region complement(16279840..16279882) FT /note="TCC repeat" FT repeat_region complement(16279820..16279882) FT /rpt_family="tcc repeat" FT /rpt_type=TANDEM FT /note="homology = 88.9%, counts = 21" FT repeat_region 16279745..16279829 FT /rpt_family="MER28" FT /note="90% identity: matches 24..105 of consensus" FT repeat_region 16279656..16279739 FT /rpt_family="MER28" FT /note="92% identity: matches 153..236 of consensus" FT exon 16279272..16279287 FT /note="XPOUND prediction, score = 0.235" FT exon 16279231..16279287 FT /note="MZEF prediction, score = 0.714" FT exon complement(16279160..16279180) FT /note="XPOUND prediction, score = 0.219" FT exon complement(16278050..16278063) FT /note="XPOUND prediction, score = 0.243" FT exon 16277592..16277874 FT /note="GENSCAN prediction, score = 6.78" FT exon complement(16277651..16277719) FT /note="XPOUND prediction, score = 0.844" FT repeat_region complement(16277640..16277684) FT /rpt_family="tgc repeat" FT /rpt_type=TANDEM FT /note="homology = 80.0%, counts = 15" FT repeat_region complement(16277538..16277555) FT /note="TTAT repeat" FT repeat_region complement(16277381..16277402) FT /note="TG repeat" FT repeat_region complement(16277363..16277402) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 92.5%, counts = 20" FT repeat_region complement(16277362..16277375) FT /note="GT repeat" FT repeat_region complement(16277362..16277373) FT /note="GT repeat" FT repeat_region complement(16277272..16277373) FT /rpt_family="ct repeat" FT /rpt_type=TANDEM FT /note="homology = 62.7%, counts = 51" FT repeat_region complement(16277273..16277362) FT /rpt_family="tc repeat" FT /rpt_type=TANDEM FT /note="homology = 64.4%, counts = 45" FT exon complement(16277073..16277089) FT /note="XPOUND prediction, score = 0.208" FT exon complement(16277068..16277070) FT /note="XPOUND prediction, score = 0.205" FT repeat_region complement(16276519..16276532) FT /note="TG repeat" FT repeat_region complement(16275546..16275574) FT /rpt_type=INVERTED FT /note="IR2, 82% complementary to IR2' (61204..61232)" FT exon 16275047..16275106 FT /note="MZEF prediction, score = 0.910" FT repeat_region complement(16274617..16274628) FT /note="TC repeat" FT repeat_region complement(16274262..16274290) FT /rpt_type=INVERTED FT /note="IR2', 82% complementary to IR2 (59920..59948)" FT repeat_region complement(16273395..16273430) FT /rpt_family="attc repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 9" FT exon complement(16272804..16272898) FT /note="GENSCAN prediction, score = 4.35" FT exon 16271576..16271702 FT /note="MZEF prediction, score = 0.545" FT repeat_region 16270587..16270738 FT /rpt_family="ALU" FT /note="85% identity: matches 127..278 of consensus" FT repeat_region complement(16270645..16270737) FT /rpt_family="L1" FT /note="87% identity: matches 166..258 of consensus" FT repeat_region complement(16270589..16270690) FT /rpt_family="L1" FT /note="83% identity: matches 702..806 of consensus" FT exon complement(16270567..16270617) FT /note="XPOUND prediction, score = 0.305" FT repeat_region complement(16270562..16270583) FT /note="TGG repeat" FT repeat_region complement(16270435..16270545) FT /rpt_family="L1" FT /note="89% identity: matches 479..589 of consensus" FT repeat_region 16270439..16270535 FT /rpt_family="ALU" FT /note="92% identity: matches 352..448 of consensus" FT exon complement(16269586..16269653) FT /note="XPOUND prediction, score = 0.553" FT exon complement(16269525..16269544) FT /note="XPOUND prediction, score = 0.239" FT exon complement(16269487..16269503) FT /note="XPOUND prediction, score = 0.318" FT repeat_region complement(16269302..16269345) FT /rpt_family="cctc repeat" FT /rpt_type=TANDEM FT /note="homology = 77.3%, counts = 11" FT repeat_region complement(16268359..16268371) FT /note="CTGA repeat" FT repeat_region complement(16267999..16268013) FT /note="TTTG repeat" FT repeat_region complement(16267952..16267968) FT /note="CAG repeat" FT exon complement(16267774..16267804) FT /note="XPOUND prediction, score = 0.307" FT repeat_region complement(16267285..16267298) FT /note="AAT repeat" FT repeat_region complement(16267242..16267252) FT /note="TC repeat" FT exon complement(16264702..16264755) FT /note="MZEF prediction, score = 0.848" FT exon complement(16264684..16264755) FT /note="GENSCAN prediction, score = 7.60" FT repeat_region complement(16262865..16262881) FT /note="TTG repeat" FT repeat_region complement(16262458..16262476) FT /note="AGCA repeat" FT exon 16262299..16262351 FT /note="XPOUND prediction, score = 0.341" FT exon 16262243..16262273 FT /note="XPOUND prediction, score = 0.556" FT repeat_region 16261234..16261491 FT /rpt_family="ALU" FT /note="80% identity: matches 26..281 of consensus" FT repeat_region complement(16261311..16261397) FT /rpt_family="L1" FT /note="86% identity: matches 340..426 of consensus" FT repeat_region complement(16261221..16261340) FT /rpt_family="L1" FT /note="85% identity: matches 465..584 of consensus" FT exon 16261121..16261125 FT /note="XPOUND prediction, score = 0.234" FT exon 16261065..16261119 FT /note="XPOUND prediction, score = 0.372" FT repeat_region complement(16260614..16260644) FT /rpt_type=INVERTED FT /note="IR3, 90% complementary to IR3' (76276..76305)" FT exon complement(16260021..16260273) FT /note="MZEF prediction, score = 0.555" FT exon 16260046..16260079 FT /note="XPOUND prediction, score = 0.522" FT exon 16259928..16259997 FT /note="XPOUND prediction, score = 0.404" FT repeat_region complement(16259189..16259218) FT /rpt_type=INVERTED FT /note="IR3', 90% complementary to IR3 (74850..74880)" FT exon complement(16258496..16258584) FT /note="GENSCAN prediction, score = 2.11" FT exon 16258283..16258414 FT /note="XPOUND prediction, score = 0.815" FT exon 16258287..16258373 FT /note="MZEF prediction, score = 0.617" FT exon 16257183..16257299 FT /note="MZEF prediction, score = 0.779" FT exon complement(16256107..16256193) FT /note="XPOUND prediction, score = 0.497" FT exon complement(16255459..16255510) FT /note="MZEF prediction, score = 0.787" FT exon 16254855..16254901 FT /note="XPOUND prediction, score = 0.283" FT exon complement(16253814..16253836) FT /note="XPOUND prediction, score = 0.224" FT exon 16252855..16252888 FT /note="XPOUND prediction, score = 0.235" FT exon complement(16252440..16252548) FT /note="MZEF prediction, score = 0.626" FT exon complement(16252440..16252499) FT /note="XPOUND prediction, score = 0.366" FT repeat_region 16251741..16251827 FT /rpt_family="L1" FT /note="87% identity: matches 1..87 of consensus" FT repeat_region 16251428..16251478 FT /rpt_family="L1" FT /note="92% identity: matches 1808..1858 of consensus" FT repeat_region complement(16249956..16250000) FT /rpt_family="agaggaagg repeat" FT /rpt_type=TANDEM FT /note="homology = 82.2%, counts = 5" FT repeat_region complement(16249832..16249864) FT /note="TG repeat" FT repeat_region complement(16249829..16249864) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 97.2%, counts = 18" FT exon complement(16249395..16249420) FT /note="XPOUND prediction, score = 0.217" FT exon complement(16249383..16249393) FT /note="XPOUND prediction, score = 0.245" FT exon 16248869..16249124 FT /note="MZEF prediction, score = 0.643" FT exon complement(16248457..16248509) FT /note="XPOUND prediction, score = 0.290" FT repeat_region complement(16245000..16245039) FT /rpt_type=INVERTED FT /note="IR4, 87% complementary to IR4' (90499..90538)" FT repeat_region complement(16244956..16244995) FT /rpt_type=INVERTED FT /note="IR4', 87% complementary to IR4 (90455..90494)" FT STS complement(16244181..16244313) FT /standard_name="HS051XD6 (D9S156), Map: 9, Homo sapiens" FT /note="GenBank Accession Number: Z16480" FT repeat_region complement(16244234..16244275) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 21" FT repeat_region complement(16244234..16244275) FT /note="TG repeat" FT repeat_region complement(16244217..16244229) FT /note="AG repeat" FT exon complement(16244079..16244141) FT /note="XPOUND prediction, score = 0.460" FT exon 16242917..16242926 FT /note="XPOUND prediction, score = 0.410" FT exon 16241021..16241130 FT /note="MZEF prediction, score = 0.664" FT STS complement(16240839..16240989) FT /standard_name="CHLC.GCT16G03.P18311 (D7S2653), Map: 7, FT Homo sapiens" FT /note="GenBank Accession Number: G10029" FT exon 16240866..16240950 FT /note="XPOUND prediction, score = 0.822" FT exon complement(16240856..16240943) FT /note="GENSCAN prediction, score = 8.34" FT /note="MZEF prediction, score = 0.929" FT repeat_region complement(16240894..16240923) FT /rpt_family="gca repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 10" FT repeat_region complement(16240894..16240923) FT /note="GCA repeat" FT exon 16240704..16240857 FT /note="XPOUND prediction, score = 0.838" FT repeat_region 16239039..16239401 FT /rpt_family="THE" FT /note="83% identity: matches 3..371 of consensus" FT exon 16239101..16239119 FT /note="XPOUND prediction, score = 0.206" FT exon 16237906..16237909 FT /note="XPOUND prediction, score = 0.200" FT exon 16236934..16236989 FT /note="XPOUND prediction, score = 0.490" FT exon 16236051..16236076 FT /note="XPOUND prediction, score = 0.215" FT repeat_region 16232395..16232450 FT /rpt_family="ALU" FT /note="89% identity: matches 132..187 of consensus" FT repeat_region complement(16232395..16232450) FT /rpt_family="L1" FT /note="89% identity: matches 748..803 of consensus" FT repeat_region 16232275..16232335 FT /rpt_family="ALU" FT /note="91% identity: matches 919..979 of consensus" FT repeat_region complement(16232274..16232324) FT /rpt_family="L1" FT /note="90% identity: matches 375..425 of consensus" FT exon 16230945..16230981 FT /note="XPOUND prediction, score = 0.528" FT exon 16230594..16230615 FT /note="XPOUND prediction, score = 0.224" FT exon 16230430..16230549 FT /note="MZEF prediction, score = 0.600" FT exon complement(16229637..16229652) FT /note="XPOUND prediction, score = 0.223" FT STS complement(16229322..16229572) FT /standard_name="CHLC.ATA10A04.P15687 (D7S2653), Map: 7, FT Homo sapiens" FT /note="GenBank Accession Number: G09663" FT repeat_region complement(16229454..16229486) FT /rpt_family="tta repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 11" FT repeat_region complement(16229453..16229486) FT /note="TTA repeat" FT repeat_region 16229281..16229432 FT /rpt_family="L1" FT /note="82% identity: matches 17..168 of consensus" FT exon complement(16229404..16229422) FT /note="XPOUND prediction, score = 0.402" FT repeat_region 16227669..16229355 FT /rpt_family="L1" FT /note="88% identity: matches 335..2029 of consensus" FT exon 16227693..16228121 FT /note="GENSCAN prediction, score = 5.39" FT repeat_region 16225728..16227634 FT /rpt_family="L1" FT /note="88% identity: matches 2274..4204 of consensus" FT repeat_region 16224798..16225632 FT /rpt_family="L1" FT /note="89% identity: matches 1327..2167 of consensus" FT repeat_region 16224478..16225062 FT /rpt_family="L1" FT /note="86% identity: matches 1415..2009 of consensus" FT exon 16224433..16224786 FT /note="GENSCAN prediction, score = 2.59" FT repeat_region 16224383..16224475 FT /rpt_family="L1" FT /note="91% identity: matches 484..576 of consensus" FT repeat_region 16224087..16224237 FT /rpt_family="L1" FT /note="90% identity: matches 165..314 of consensus" FT repeat_region 16223824..16224088 FT /rpt_family="L1" FT /note="82% identity: matches 735..998 of consensus" FT repeat_region 16223669..16223791 FT /rpt_family="L1" FT /note="86% identity: matches 30..152 of consensus" FT repeat_region 16223500..16223726 FT /rpt_family="L1" FT /note="83% identity: matches 419..639 of consensus" FT repeat_region 16223334..16223471 FT /rpt_family="L1" FT /note="82% identity: matches 257..393 of consensus" FT repeat_region 16223086..16223314 FT /rpt_family="L1" FT /note="83% identity: matches 1..229 of consensus" FT repeat_region complement(16220963..16220985) FT /note="TTTG repeat" FT repeat_region complement(16220954..16220985) FT /rpt_family="tttg repeat" FT /rpt_type=TANDEM FT /note="homology = 87.5%, counts = 8" FT repeat_region complement(16220675..16220980) FT /rpt_type=INVERTED FT /note="IR5, 86% complementary to IR5' (115154..115457)" FT repeat_region complement(16220689..16220948) FT /rpt_family="L1" FT /note="84% identity: matches 168..424 of consensus" FT repeat_region 16220738..16220932 FT /rpt_family="ALU" FT /note="92% identity: matches 55..249 of consensus" FT exon complement(16220348..16220368) FT /note="XPOUND prediction, score = 0.298" FT repeat_region complement(16220064..16220340) FT /rpt_family="ALU" FT /note="90% identity: matches 1..282 of consensus" FT repeat_region complement(16220037..16220340) FT /rpt_type=INVERTED FT /note="IR5', 86% complementary to IR5 (114514..114819)" FT repeat_region 16220064..16220326 FT /rpt_family="L1" FT /note="85% identity: matches 161..424 of consensus" FT exon 16219860..16219983 FT /note="MZEF prediction, score = 0.537" FT repeat_region 16219871..16219964 FT /rpt_family="L1" FT /note="84% identity: matches 1813..1906 of consensus" FT repeat_region complement(16219432..16219442) FT /note="AC repeat" FT exon 16218989..16219212 FT /note="GENSCAN prediction, score = 10.00" FT exon 16218360..16218518 FT /note="XPOUND prediction, score = 0.672" FT exon 16218266..16218303 FT /note="XPOUND prediction, score = 0.248" FT exon complement(16217963..16217986) FT /note="XPOUND prediction, score = 0.275" FT exon 16217580..16217646 FT /note="MZEF prediction, score = 0.728" FT repeat_region complement(16217260..16217293) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 97.1%, counts = 17" FT repeat_region complement(16217259..16217289) FT /note="AC repeat" FT exon 16217092..16217132 FT /note="XPOUND prediction, score = 0.251" FT exon complement(16215770..16215897) FT /note="MZEF prediction, score = 0.753" FT exon 16215155..16215387 FT /note="GENSCAN prediction, score = 7.77" FT exon complement(16214905..16214936) FT /note="XPOUND prediction, score = 0.249" FT exon 16214772..16214933 FT /note="GENSCAN prediction, score = 2.55" FT /note="MZEF prediction, score = 0.579" FT exon 16214900..16214932 FT /note="XPOUND prediction, score = 0.236" FT exon 16213369..16213476 FT /note="GENSCAN prediction, score = 0.36" FT exon 16213112..16213214 FT /note="MZEF prediction, score = 0.505" FT exon 16212050..16212141 FT /note="XPOUND prediction, score = 0.535" FT repeat_region complement(16210215..16210274) FT /rpt_family="tcct repeat" FT /rpt_type=TANDEM FT /note="homology = 71.7%, counts = 15" FT repeat_region complement(16209590..16209603) FT /note="AAC repeat" FT exon 16209306..16209343 FT /note="XPOUND prediction, score = 0.296" FT repeat_region complement(16208233..16208494) FT /rpt_family="ALU" FT /note="86% identity: matches 580..840 of consensus" FT repeat_region 16208212..16208481 FT /rpt_family="L1" FT /note="82% identity: matches 162..424 of consensus" FT repeat_region complement(16208188..16208211) FT /note="CAAA repeat" FT repeat_region complement(16208160..16208211) FT /rpt_family="caaa repeat" FT /rpt_type=TANDEM FT /note="homology = 80.8%, counts = 13" FT repeat_region complement(16208164..16208181) FT /note="AAC repeat" FT exon 16207373..16207436 FT /note="XPOUND prediction, score = 0.698" FT exon 16205899..16205964 FT /note="XPOUND prediction, score = 0.494" FT exon 16204120..16204164 FT /note="XPOUND prediction, score = 0.366" FT exon 16203087..16203092 FT /note="XPOUND prediction, score = 0.200" FT repeat_region complement(16202154..16202168) FT /note="GGGCA repeat" FT exon complement(16201045..16201141) FT /note="MZEF prediction, score = 0.531" FT repeat_region 16199866..16200145 FT /rpt_family="L1" FT /note="86% identity: matches 245..526 of consensus" FT repeat_region complement(16199866..16200135) FT /rpt_family="ALU" FT /note="90% identity: matches 4..274 of consensus" FT repeat_region complement(16199843..16199864) FT /rpt_type=INVERTED FT /note="IR6, 95% complementary to IR6' (136528..136549)" FT repeat_region complement(16198945..16198966) FT /rpt_type=INVERTED FT /note="IR6', 95% complementary to IR6 (135630..135651)" FT exon 16198667..16198761 FT /note="GENSCAN prediction, score = 1.59" FT exon 16198354..16198393 FT /note="XPOUND prediction, score = 0.217" FT exon 16198140..16198189 FT /note="GENSCAN prediction, score = 6.40" FT exon 16198134..16198189 FT /note="XPOUND prediction, score = 0.404" FT repeat_region complement(16198148..16198161) FT /note="GCA repeat" FT repeat_region complement(16197807..16197829) FT /note="TTTGT repeat" FT repeat_region complement(16197639..16197653) FT /note="TTTC repeat" FT exon complement(16197516..16197626) FT /note="MZEF prediction, score = 0.619" FT repeat_region complement(16192911..16192923) FT /note="TATT repeat" FT repeat_region complement(16192470..16192565) FT /rpt_family="aggggggagaga repeat" FT /rpt_type=TANDEM FT /note="homology = 66.7%, counts = 8" FT repeat_region complement(16192538..16192551) FT /note="GAAA repeat" FT exon 16192019..16192339 FT /note="MZEF prediction, score = 0.661" FT exon 16192079..16192159 FT /note="XPOUND prediction, score = 0.965" FT repeat_region complement(16192134..16192151) FT /note="GCA repeat" FT repeat_region complement(16191596..16191637) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 76.2%, counts = 21" FT repeat_region complement(16191600..16191614) FT /note="CA repeat" FT repeat_region complement(16190756..16190863) FT /rpt_family="ALU" FT /note="84% identity: matches 465..573 of consensus" FT repeat_region 16190756..16190789 FT /rpt_family="L1" FT /note="97% identity: matches 480..513 of consensus" FT repeat_region complement(16190591..16190691) FT /rpt_family="L1" FT /note="87% identity: matches 357..457 of consensus" FT repeat_region 16190199..16190290 FT /rpt_family="L1" FT /note="90% identity: matches 57..148 of consensus" FT exon 16189316..16189387 FT /note="XPOUND prediction, score = 0.566" FT repeat_region complement(16187447..16189119) FT /rpt_family="L1" FT /note="95% identity: matches 294..1967 of consensus" FT exon complement(16187928..16189054) FT /note="GENSCAN prediction, score = 27.00" FT repeat_region complement(16187283..16187413) FT /rpt_family="L1" FT /note="94% identity: matches 2301..2432 of consensus" FT exon complement(16186384..16186505) FT /note="MZEF prediction, score = 0.852" FT repeat_region complement(16185852..16185978) FT /rpt_family="ALU" FT /note="82% identity: matches 24..149 of consensus" FT repeat_region complement(16185808..16185890) FT /rpt_family="ALU" FT /note="84% identity: matches 110..192 of consensus" FT exon 16185745..16185843 FT /note="MZEF prediction, score = 0.640" FT repeat_region complement(16185713..16185728) FT /note="AAAAT repeat" FT repeat_region complement(16184579..16184593) FT /note="GTTTT repeat" FT exon 16183901..16183926 FT /note="XPOUND prediction, score = 0.219" FT repeat_region complement(16183417..16183490) FT /rpt_family="tc repeat" FT /rpt_type=TANDEM FT /note="homology = 75.7%, counts = 37" FT exon 16183334..16183389 FT /note="XPOUND prediction, score = 0.477" FT repeat_region 16182752..16182870 FT /rpt_family="L1" FT /note="84% identity: matches 478..596 of consensus" FT repeat_region complement(16182752..16182859) FT /rpt_family="ALU" FT /note="91% identity: matches 308..415 of consensus" FT exon 16182435..16182448 FT /note="XPOUND prediction, score = 0.297" FT exon 16182417..16182430 FT /note="XPOUND prediction, score = 0.223" FT exon 16182323..16182332 FT /note="XPOUND prediction, score = 0.204" FT misc_feature 16396215 FT /note="Clone_left_end: RP11-183I6" FT misc_feature complement(16398202..16596930) FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon complement(16595908..16596015) FT /note="GRAIL, score = 53%, comment = good shadow" FT exon 16595585..16595667 FT /note="MZEF prediction, score = 0.722" FT exon 16595563..16595667 FT /note="GRAIL, score = 78%, comment = excellent" FT exon 16594358..16594486 FT /note="GRAIL, score = 68%, comment = good" FT repeat_region complement(16593530..16593545) FT /note="AC repeat" FT exon complement(16593513..16593527) FT /note="XPOUND prediction, score = 0.436" FT repeat_region complement(16592106..16592119) FT /note="GGGGA repeat" FT exon 16591249..16591380 FT /note="GRAIL, score = 89%, comment = excellent" FT repeat_region complement(16590806..16590819) FT /note="TG repeat" FT repeat_region complement(16590543..16590799) FT /rpt_type=INVERTED FT /note="IR1, 78% complementary to IR1' (7460..7723)" FT repeat_region 16590604..16590710 FT /rpt_family="ALU" FT /note="85% identity: matches 382..489 of consensus" FT repeat_region 16590541..16590600 FT /rpt_family="ALU" FT /note="90% identity: matches 11..70 of consensus" FT repeat_region 16590230..16590476 FT /rpt_family="L1" FT /note="84% identity: matches 182..424 of consensus" FT repeat_region complement(16590214..16590476) FT /rpt_family="ALU" FT /note="89% identity: matches 14..278 of consensus" FT repeat_region 16589978..16590113 FT /rpt_family="ALU" FT /note="86% identity: matches 2..138 of consensus" FT repeat_region complement(16590046..16590107) FT /rpt_family="L1" FT /note="88% identity: matches 464..525 of consensus" FT repeat_region complement(16589996..16590074) FT /rpt_family="L1" FT /note="86% identity: matches 836..914 of consensus" FT repeat_region complement(16589526..16589805) FT /rpt_family="ALU" FT /note="87% identity: matches 1..282 of consensus" FT repeat_region 16589534..16589787 FT /rpt_family="L1" FT /note="85% identity: matches 170..420 of consensus" FT repeat_region complement(16589496..16589522) FT /note="AAAC repeat" FT repeat_region complement(16589495..16589522) FT /rpt_family="aaac repeat" FT /rpt_type=TANDEM FT /note="homology = 96.4%, counts = 7" FT repeat_region complement(16589437..16589484) FT /rpt_family="ALU" FT /note="91% identity: matches 383..430 of consensus" FT repeat_region complement(16589208..16589471) FT /rpt_type=INVERTED FT /note="IR1', 78% complementary to IR1 (6132..6388)" FT repeat_region 16589211..16589468 FT /rpt_family="L1" FT /note="81% identity: matches 170..423 of consensus" FT repeat_region complement(16589203..16589457) FT /rpt_family="ALU" FT /note="85% identity: matches 25..281 of consensus" FT exon complement(16589383..16589385) FT /note="GENSCAN prediction, score = 1.35" FT exon complement(16589062..16589085) FT /note="XPOUND prediction, score = 0.395" FT repeat_region complement(16587230..16587355) FT /rpt_family="ALU" FT /note="85% identity: matches 714..839 of consensus" FT exon complement(16587125..16587138) FT /note="XPOUND prediction, score = 0.358" FT exon complement(16586956..16587035) FT /note="MZEF prediction, score = 0.674" FT repeat_region complement(16586926..16586938) FT /note="TAAA repeat" FT repeat_region complement(16586593..16586618) FT /note="GA repeat" FT exon complement(16586324..16586394) FT /note="MZEF prediction, score = 0.579" FT repeat_region complement(16586083..16586231) FT /rpt_type=INVERTED FT /note="IR2, 90% complementary to IR2' (10978..11120)" FT exon complement(16586149..16586202) FT /note="XPOUND prediction, score = 0.254" FT exon complement(16586107..16586202) FT /note="GENSCAN prediction, score = 5.99" FT repeat_region complement(16585811..16585953) FT /rpt_type=INVERTED FT /note="IR2', 90% complementary to IR2 (10700..10848)" FT exon 16585750..16585929 FT /note="GRAIL, score = 46%, comment = marginal" FT repeat_region complement(16585266..16585293) FT /rpt_type=INVERTED FT /note="IR3, 89% complementary to IR3' (11846..11874)" FT repeat_region complement(16585057..16585085) FT /rpt_type=INVERTED FT /note="IR3', 89% complementary to IR3 (11638..11665)" FT exon complement(16584499..16584611) FT /note="GRAIL, score = 48%, comment = marginal shadow" FT exon complement(16582981..16583083) FT /note="GENSCAN prediction, score = 6.33" FT /note="MZEF prediction, score = 0.541" FT exon complement(16582981..16583005) FT /note="XPOUND prediction, score = 0.632" FT repeat_region complement(16582891..16582932) FT /note="GT repeat" FT repeat_region complement(16582887..16582932) FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 97.8%, counts = 23" FT exon complement(16582419..16582518) FT /note="MZEF prediction, score = 0.972" FT exon complement(16582419..16582424) FT /note="XPOUND prediction, score = 0.209" FT exon complement(16582300..16582310) FT /note="XPOUND prediction, score = 0.231" FT repeat_region 16581655..16581702 FT /rpt_family="THE" FT /note="93% identity: matches 286..333 of consensus" FT repeat_region 16581281..16581498 FT /rpt_family="ALU" FT /note="89% identity: matches 6..220 of consensus" FT repeat_region complement(16581409..16581487) FT /rpt_type=INVERTED FT /note="IR4, 80% complementary to IR4' (17348..17429)" FT repeat_region complement(16581349..16581460) FT /rpt_family="L1" FT /note="92% identity: matches 748..860 of consensus" FT exon 16581246..16581349 FT /note="GRAIL, score = 55%, comment = good" FT repeat_region 16581103..16581198 FT /rpt_family="THE" FT /note="85% identity: matches 25..120 of consensus" FT exon complement(16580517..16580544) FT /note="XPOUND prediction, score = 0.291" FT repeat_region complement(16579502..16579583) FT /rpt_type=INVERTED FT /note="IR4', 80% complementary to IR4 (15444..15522)" FT repeat_region complement(16579444..16579552) FT /rpt_family="ALU" FT /note="86% identity: matches 334..442 of consensus" FT repeat_region complement(16579299..16579360) FT /rpt_family="ALU" FT /note="90% identity: matches 218..279 of consensus" FT exon complement(16578004..16578012) FT /note="XPOUND prediction, score = 0.326" FT repeat_region complement(16576753..16577033) FT /rpt_family="ALU" FT /note="91% identity: matches 1..281 of consensus" FT repeat_region 16576753..16577019 FT /rpt_family="L1" FT /note="88% identity: matches 159..424 of consensus" FT exon complement(16576935..16576961) FT /note="XPOUND prediction, score = 0.254" FT repeat_region complement(16576741..16576755) FT /note="CAA repeat" FT exon complement(16576177..16576229) FT /note="XPOUND prediction, score = 0.324" FT exon 16573631..16573854 FT /note="GRAIL, score = 46%, comment = marginal" FT exon 16573613..16573755 FT /note="MZEF prediction, score = 0.985" FT exon complement(16573619..16573711) FT /note="XPOUND prediction, score = 0.508" FT repeat_region 16573025..16573191 FT /rpt_family="ALU" FT /note="83% identity: matches 259..425 of consensus" FT repeat_region complement(16573072..16573130) FT /rpt_family="L1" FT /note="88% identity: matches 748..806 of consensus" FT repeat_region complement(16573025..16573076) FT /rpt_family="L1" FT /note="90% identity: matches 464..515 of consensus" FT exon 16572700..16572783 FT /note="GRAIL, score = 42%, comment = marginal" FT exon 16572293..16572433 FT /note="GRAIL, score = 62%, comment = good" FT exon complement(16572268..16572286) FT /note="XPOUND prediction, score = 0.237" FT exon 16571740..16571864 FT /note="GRAIL, score = 69%, comment = good" FT exon complement(16571761..16571826) FT /note="GENSCAN prediction, score = 1.66" FT repeat_region complement(16569830..16569841) FT /note="AAT repeat" FT repeat_region complement(16565807..16565862) FT /rpt_family="gttt repeat" FT /rpt_type=TANDEM FT /note="homology = 78.6%, counts = 14" FT repeat_region 16565531..16565780 FT /rpt_family="ALU" FT /note="83% identity: matches 5..255 of consensus" FT repeat_region complement(16565541..16565661) FT /rpt_family="L1" FT /note="83% identity: matches 305..424 of consensus" FT exon 16565532..16565624 FT /note="MZEF prediction, score = 0.653" FT exon complement(16565274..16565295) FT /note="XPOUND prediction, score = 0.215" FT exon complement(16564210..16564238) FT /note="XPOUND prediction, score = 0.725" FT repeat_region 16563342..16563447 FT /rpt_family="ALU" FT /note="85% identity: matches 8..113 of consensus" FT repeat_region complement(16563349..16563444) FT /rpt_family="L1" FT /note="85% identity: matches 487..582 of consensus" FT exon complement(16562746..16562756) FT /note="XPOUND prediction, score = 0.253" FT exon 16562327..16562365 FT /note="GRAIL, score = 90%, comment = excellent" FT exon 16562205..16562365 FT /note="MZEF prediction, score = 0.912" FT repeat_region 16561961..16562002 FT /rpt_family="ALU" FT /note="92% identity: matches 238..279 of consensus" FT repeat_region complement(16561819..16561994) FT /rpt_family="L1" FT /note="82% identity: matches 169..343 of consensus" FT repeat_region 16561792..16561978 FT /rpt_family="ALU" FT /note="87% identity: matches 207..392 of consensus" FT repeat_region 16560974..16561219 FT /rpt_family="ALU" FT /note="86% identity: matches 19..264 of consensus" FT repeat_region complement(16561021..16561165) FT /rpt_family="L1" FT /note="83% identity: matches 383..530 of consensus" FT repeat_region complement(16560965..16561001) FT /rpt_family="L1" FT /note="97% identity: matches 549..585 of consensus" FT exon 16560830..16560922 FT /note="GRAIL, score = 89%, comment = excellent" FT repeat_region 16560633..16560680 FT /rpt_family="ALU" FT /note="95% identity: matches 190..237 of consensus" FT exon complement(16559633..16559782) FT /note="GRAIL, score = 55%, comment = good shadow" FT exon complement(16559711..16559760) FT /note="XPOUND prediction, score = 0.244" FT exon complement(16559583..16559601) FT /note="XPOUND prediction, score = 0.235" FT repeat_region complement(16559443..16559455) FT /note="AAT repeat" FT repeat_region complement(16559282..16559388) FT /rpt_family="MER30" FT /note="90% identity: matches 1..108 of consensus" FT repeat_region complement(16559203..16559259) FT /rpt_family="MER30" FT /note="92% identity: matches 147..203 of consensus" FT repeat_region complement(16558650..16558931) FT /rpt_family="L1" FT /note="84% identity: matches 245..523 of consensus" FT repeat_region 16558650..16558930 FT /rpt_family="ALU" FT /note="87% identity: matches 181..458 of consensus" FT repeat_region complement(16558657..16558818) FT /rpt_type=INVERTED FT /note="IR5, 82% complementary to IR5' (38796..38963)" FT repeat_region 16558099..16558135 FT /rpt_family="MIR" FT /note="100% identity: matches 3..39 of consensus" FT repeat_region complement(16557968..16558135) FT /rpt_type=INVERTED FT /note="IR5', 82% complementary to IR5 (38113..38274)" FT repeat_region complement(16557956..16558134) FT /rpt_type=INVERTED FT /note="IR6, 79% complementary to IR6' (39531..39705)" FT repeat_region complement(16558027..16558127) FT /rpt_family="ALU" FT /note="90% identity: matches 154..254 of consensus" FT repeat_region complement(16557962..16558013) FT /rpt_family="ALU" FT /note="90% identity: matches 127..178 of consensus" FT repeat_region complement(16557829..16557877) FT /rpt_family="caaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 83.7%, counts = 7" FT repeat_region complement(16557857..16557870) FT /note="AAAC repeat" FT repeat_region 16557226..16557494 FT /rpt_family="ALU" FT /note="85% identity: matches 10..279 of consensus" FT repeat_region complement(16557229..16557490) FT /rpt_family="L1" FT /note="85% identity: matches 167..424 of consensus" FT repeat_region complement(16557226..16557400) FT /rpt_type=INVERTED FT /note="IR6', 79% complementary to IR6 (38797..38975)" FT repeat_region complement(16556467..16556795) FT /rpt_type=INVERTED FT /note="IR7, 82% complementary to IR7' (41592..41927)" FT repeat_region complement(16556500..16556758) FT /rpt_family="L1" FT /note="85% identity: matches 167..424 of consensus" FT repeat_region 16556491..16556758 FT /rpt_family="ALU" FT /note="89% identity: matches 451..718 of consensus" FT repeat_region complement(16556292..16556307) FT /note="GTTT repeat" FT repeat_region 16556161..16556294 FT /rpt_family="ALU" FT /note="83% identity: matches 156..288 of consensus" FT repeat_region 16556016..16556071 FT /rpt_family="ALU" FT /note="94% identity: matches 1..56 of consensus" FT repeat_region 16555655..16555794 FT /rpt_family="ALU" FT /note="84% identity: matches 466..602 of consensus" FT repeat_region 16555584..16555703 FT /rpt_family="ALU" FT /note="82% identity: matches 223..341 of consensus" FT repeat_region 16555515..16555559 FT /rpt_family="ALU" FT /note="97% identity: matches 137..181 of consensus" FT repeat_region complement(16555004..16555339) FT /rpt_type=INVERTED FT /note="IR7', 82% complementary to IR7 (40136..40464)" FT repeat_region complement(16555195..16555312) FT /rpt_family="ALU" FT /note="96% identity: matches 311..428 of consensus" FT repeat_region 16555195..16555310 FT /rpt_family="L1" FT /note="92% identity: matches 401..516 of consensus" FT exon complement(16555222..16555258) FT /note="XPOUND prediction, score = 0.433" FT repeat_region complement(16555030..16555183) FT /rpt_family="ALU" FT /note="93% identity: matches 435..589 of consensus" FT repeat_region 16555030..16555141 FT /rpt_family="L1" FT /note="91% identity: matches 239..350 of consensus" FT exon complement(16554899..16554912) FT /note="XPOUND prediction, score = 0.272" FT exon complement(16554467..16554504) FT /note="XPOUND prediction, score = 0.396" FT repeat_region complement(16553147..16553163) FT /note="TTGTT repeat" FT exon complement(16552855..16552960) FT /note="MZEF prediction, score = 0.585" FT exon complement(16552528..16552789) FT /note="XPOUND prediction, score = 0.940" FT exon complement(16552528..16552763) FT /note="GENSCAN prediction, score = 16.78" FT /note="GRAIL, score = 95%, comment = excellent" FT exon 16552488..16552641 FT /note="GRAIL, score = 87%, comment = excellent shadow" FT exon complement(16552472..16552514) FT /note="XPOUND prediction, score = 0.297" FT exon complement(16552196..16552208) FT /note="XPOUND prediction, score = 0.238" FT exon complement(16551613..16551673) FT /note="XPOUND prediction, score = 0.556" FT repeat_region complement(16550266..16550364) FT /rpt_family="MER30" FT /note="91% identity: matches 1..100 of consensus" FT repeat_region complement(16550155..16550247) FT /rpt_family="MER30" FT /note="89% identity: matches 148..240 of consensus" FT exon complement(16549274..16549316) FT /note="XPOUND prediction, score = 0.557" FT repeat_region complement(16548443..16548692) FT /rpt_family="ALU" FT /note="88% identity: matches 145..395 of consensus" FT repeat_region 16548422..16548688 FT /rpt_family="L1" FT /note="85% identity: matches 161..424 of consensus" FT repeat_region complement(16548382..16548420) FT /rpt_family="gaa repeat" FT /rpt_type=TANDEM FT /note="homology = 84.6%, counts = 13" FT repeat_region complement(16548382..16548402) FT /note="GAA repeat" FT exon complement(16548380..16548402) FT /note="XPOUND prediction, score = 0.361" FT exon complement(16548008..16548084) FT /note="XPOUND prediction, score = 0.411" FT exon complement(16547860..16548015) FT /note="GENSCAN prediction, score = 0.29" FT exon 16547155..16547259 FT /note="GRAIL, score = 54%, comment = good" FT exon complement(16545759..16545837) FT /note="XPOUND prediction, score = 0.512" FT exon complement(16545758..16545837) FT /note="GRAIL, score = 65%, comment = good" FT repeat_region complement(16545096..16545153) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 69.0%, counts = 29" FT repeat_region complement(16544709..16544803) FT /rpt_family="L1" FT /note="87% identity: matches 165..259 of consensus" FT repeat_region 16544702..16544803 FT /rpt_family="ALU" FT /note="91% identity: matches 1032..1133 of consensus" FT repeat_region complement(16544548..16544687) FT /rpt_family="L1" FT /note="87% identity: matches 290..424 of consensus" FT repeat_region 16544534..16544680 FT /rpt_family="ALU" FT /note="91% identity: matches 363..508 of consensus" FT exon complement(16544178..16544208) FT /note="XPOUND prediction, score = 0.380" FT exon complement(16542964..16543035) FT /note="GRAIL, score = 75%, comment = excellent" FT exon 16541340..16541484 FT /note="GRAIL, score = 63%, comment = good" FT repeat_region complement(16539749..16539881) FT /note="TTTCC repeat" FT repeat_region complement(16539692..16539881) FT /rpt_family="ctttc repeat" FT /rpt_type=TANDEM FT /note="homology = 83.7%, counts = 38" FT repeat_region complement(16539734..16539748) FT /note="CCCTT repeat" FT repeat_region complement(16539675..16539717) FT /note="CCTT repeat" FT repeat_region complement(16539655..16539674) FT /note="CCCT repeat" FT repeat_region complement(16539641..16539654) FT /note="TC repeat" FT repeat_region complement(16539503..16539654) FT /rpt_family="tctctccc repeat" FT /rpt_type=TANDEM FT /note="homology = 71.1%, counts = 19" FT repeat_region complement(16539618..16539631) FT /note="CTCC repeat" FT repeat_region complement(16539604..16539617) FT /note="TC repeat" FT repeat_region complement(16539581..16539594) FT /note="CTCC repeat" FT repeat_region complement(16539561..16539574) FT /note="TC repeat" FT repeat_region complement(16539525..16539535) FT /note="CT repeat" FT repeat_region 16539386..16539505 FT /rpt_family="ALU" FT /note="84% identity: matches 143..262 of consensus" FT exon complement(16539229..16539350) FT /note="MZEF prediction, score = 0.971" FT repeat_region 16539265..16539328 FT /rpt_family="ALU" FT /note="90% identity: matches 29..92 of consensus" FT repeat_region complement(16539043..16539054) FT /note="AC repeat" FT exon complement(16538416..16538502) FT /note="MZEF prediction, score = 0.507" FT exon complement(16537544..16537586) FT /note="MZEF prediction, score = 0.975" FT exon 16535589..16535680 FT /note="MZEF prediction, score = 0.719" FT exon complement(16535526..16535610) FT /note="GRAIL, score = 53%, comment = good" FT exon 16534779..16534852 FT /note="MZEF prediction, score = 0.982" FT exon complement(16534202..16534250) FT /note="MZEF prediction, score = 0.576" FT exon complement(16534017..16534022) FT /note="XPOUND prediction, score = 0.250" FT repeat_region complement(16533418..16533508) FT /rpt_family="ttatttt repeat" FT /rpt_type=TANDEM FT /note="homology = 64.8%, counts = 13" FT repeat_region complement(16531576..16531590) FT /note="TTTG repeat" FT repeat_region complement(16531397..16531418) FT /rpt_type=INVERTED FT /note="IR8, 95% complementary to IR8' (66754..66775)" FT exon complement(16531273..16531383) FT /note="GENSCAN prediction, score = 1.18" FT /note="GRAIL, score = 73%, comment = good" FT exon complement(16530345..16530369) FT /note="XPOUND prediction, score = 0.259" FT exon complement(16530254..16530264) FT /note="XPOUND prediction, score = 0.209" FT repeat_region complement(16530156..16530177) FT /rpt_type=INVERTED FT /note="IR8', 95% complementary to IR8 (65513..65534)" FT repeat_region 16530013..16530118 FT /rpt_family="L1" FT /note="85% identity: matches 464..563 of consensus" FT repeat_region complement(16529972..16530118) FT /rpt_family="ALU" FT /note="84% identity: matches 339..479 of consensus" FT repeat_region complement(16529865..16530044) FT /rpt_family="ALU" FT /note="88% identity: matches 247..426 of consensus" FT repeat_region 16529865..16530044 FT /rpt_family="L1" FT /note="83% identity: matches 161..341 of consensus" FT repeat_region complement(16529845..16529864) FT /note="ATAA repeat" FT exon complement(16529054..16529074) FT /note="XPOUND prediction, score = 0.312" FT exon complement(16527877..16528086) FT /note="GRAIL, score = 70%, comment = good shadow" FT exon 16527857..16527906 FT /note="XPOUND prediction, score = 0.343" FT exon 16527720..16527906 FT /note="GRAIL, score = 56%, comment = good" FT exon complement(16527877..16527895) FT /note="XPOUND prediction, score = 0.241" FT exon 16527426..16527569 FT /note="XPOUND prediction, score = 0.345" FT exon 16527380..16527569 FT /note="GENSCAN prediction, score = 6.24" FT exon 16527380..16527539 FT /note="GRAIL, score = 60%, comment = good" FT exon complement(16527231..16527365) FT /note="GENSCAN prediction, score = 6.39" FT repeat_region complement(16527271..16527283) FT /note="CAT repeat" FT exon 16527093..16527254 FT /note="GRAIL, score = 64%, comment = good" FT exon complement(16527150..16527187) FT /note="XPOUND prediction, score = 0.253" FT exon complement(16526506..16526586) FT /note="GRAIL, score = 76%, comment = excellent shadow" FT exon complement(16526389..16526565) FT /note="MZEF prediction, score = 0.740" FT exon complement(16526510..16526531) FT /note="XPOUND prediction, score = 0.235" FT repeat_region complement(16526166..16526219) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 70.4%, counts = 27" FT repeat_region complement(16525215..16525314) FT /rpt_family="ttttcttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 65.0%, counts = 10" FT exon 16525180..16525230 FT /note="MZEF prediction, score = 0.572" FT repeat_region 16524907..16525060 FT /rpt_family="ALU" FT /note="82% identity: matches 433..588 of consensus" FT repeat_region 16524801..16524940 FT /rpt_family="ALU" FT /note="87% identity: matches 308..447 of consensus" FT repeat_region complement(16524798..16524922) FT /rpt_family="L1" FT /note="85% identity: matches 464..588 of consensus" FT exon complement(16524038..16524090) FT /note="GRAIL, score = 90%, comment = excellent" FT repeat_region 16523884..16523934 FT /rpt_family="L1" FT /note="94% identity: matches 319..369 of consensus" FT repeat_region 16523683..16523879 FT /rpt_family="ALU" FT /note="89% identity: matches 40..234 of consensus" FT repeat_region complement(16523650..16523866) FT /rpt_family="L1" FT /note="84% identity: matches 302..520 of consensus" FT repeat_region complement(16523468..16523495) FT /note="TTTTG repeat" FT repeat_region complement(16523195..16523472) FT /rpt_family="L1" FT /note="89% identity: matches 241..519 of consensus" FT repeat_region 16523188..16523472 FT /rpt_family="ALU" FT /note="91% identity: matches 1..286 of consensus" FT exon 16523028..16523068 FT /note="MZEF prediction, score = 0.606" FT exon 16523000..16523068 FT /note="GRAIL, score = 65%, comment = good" FT exon complement(16522290..16522448) FT /note="GENSCAN prediction, score = 4.46" FT exon complement(16520064..16520255) FT /note="XPOUND prediction, score = 0.773" FT exon 16519865..16520035 FT /note="GENSCAN prediction, score = 3.14" FT exon complement(16519266..16519279) FT /note="XPOUND prediction, score = 0.219" FT exon complement(16519124..16519131) FT /note="XPOUND prediction, score = 0.204" FT repeat_region complement(16518959..16518974) FT /note="TTTG repeat" FT repeat_region complement(16518670..16518887) FT /rpt_type=INVERTED FT /note="IR9, 76% complementary to IR9' (78553..78775)" FT repeat_region complement(16518644..16518887) FT /rpt_family="ALU" FT /note="88% identity: matches 314..556 of consensus" FT repeat_region 16518648..16518884 FT /rpt_family="L1" FT /note="81% identity: matches 192..424 of consensus" FT repeat_region complement(16518578..16518631) FT /rpt_family="caaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 9" FT repeat_region complement(16518616..16518629) FT /note="AAAAC repeat" FT repeat_region complement(16518596..16518609) FT /note="AAAC repeat" FT repeat_region complement(16518581..16518595) FT /note="CAA repeat" FT repeat_region complement(16518564..16518577) FT /note="AT repeat" FT exon complement(16518533..16518555) FT /note="XPOUND prediction, score = 0.446" FT repeat_region complement(16518429..16518442) FT /note="TTA repeat" FT repeat_region complement(16518156..16518378) FT /rpt_type=INVERTED FT /note="IR9', 76% complementary to IR9 (78044..78261)" FT repeat_region 16518215..16518339 FT /rpt_family="ALU" FT /note="84% identity: matches 941..1066 of consensus" FT repeat_region 16518159..16518261 FT /rpt_family="ALU" FT /note="88% identity: matches 919..1022 of consensus" FT repeat_region complement(16518163..16518245) FT /rpt_family="L1" FT /note="86% identity: matches 834..917 of consensus" FT exon complement(16517976..16518095) FT /note="MZEF prediction, score = 0.885" FT exon 16517899..16518057 FT /note="GRAIL, score = 57%, comment = good" FT repeat_region complement(16517565..16517576) FT /note="GT repeat" FT exon 16517177..16517272 FT /note="MZEF prediction, score = 0.994" FT exon 16516251..16516301 FT /note="MZEF prediction, score = 0.562" FT exon complement(16516273..16516290) FT /note="XPOUND prediction, score = 0.212" FT repeat_region complement(16516218..16516244) FT /rpt_type=INVERTED FT /note="IR10, 85% complementary to IR10' (82124..82150)" FT repeat_region complement(16515816..16515830) FT /note="TA repeat" FT exon complement(16515645..16515675) FT /note="GRAIL, score = 84%, comment = excellent shadow" FT /note="XPOUND prediction, score = 0.218" FT exon 16515520..16515576 FT /note="GENSCAN prediction, score = 0.26" FT exon 16515162..16515301 FT /note="GRAIL, score = 56%, comment = good" FT exon 16515097..16515301 FT /note="GENSCAN prediction, score = 13.08" FT repeat_region complement(16514781..16514807) FT /rpt_type=INVERTED FT /note="IR10', 85% complementary to IR10 (80687..80713)" FT repeat_region complement(16514783..16514801) FT /note="TTTG repeat" FT exon 16514611..16514656 FT /note="GRAIL, score = 65%, comment = good" FT repeat_region 16513323..16513602 FT /rpt_family="L1" FT /note="88% identity: matches 245..527 of consensus" FT repeat_region complement(16513295..16513601) FT /rpt_type=INVERTED FT /note="IR11, 82% complementary to IR11' (83776..84079)" FT repeat_region complement(16513323..16513596) FT /rpt_family="ALU" FT /note="92% identity: matches 308..583 of consensus" FT exon 16513251..16513293 FT /note="MZEF prediction, score = 0.515" FT repeat_region complement(16513139..16513157) FT /note="TTTTC repeat" FT repeat_region complement(16512852..16513155) FT /rpt_type=INVERTED FT /note="IR11', 82% complementary to IR11 (83330..83636)" FT repeat_region 16512856..16513127 FT /rpt_family="ALU" FT /note="83% identity: matches 4..278 of consensus" FT repeat_region complement(16512863..16513042) FT /rpt_family="L1" FT /note="84% identity: matches 743..924 of consensus" FT exon complement(16512554..16512562) FT /note="XPOUND prediction, score = 0.296" FT repeat_region complement(16512475..16512510) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 86.1%, counts = 18" FT repeat_region complement(16512483..16512504) FT /note="TG repeat" FT repeat_region complement(16511546..16511711) FT /rpt_family="ALU" FT /note="80% identity: matches 481..648 of consensus" FT repeat_region complement(16511452..16511597) FT /rpt_family="ALU" FT /note="83% identity: matches 132..277 of consensus" FT exon complement(16511316..16511402) FT /note="MZEF prediction, score = 0.503" FT repeat_region complement(16511148..16511251) FT /rpt_family="ALU" FT /note="86% identity: matches 943..1046 of consensus" FT exon 16511128..16511238 FT /note="MZEF prediction, score = 0.756" FT exon complement(16511179..16511185) FT /note="XPOUND prediction, score = 0.202" FT exon complement(16510450..16510502) FT /note="GRAIL, score = 91%, comment = excellent" FT /note="XPOUND prediction, score = 0.452" FT exon complement(16509202..16509297) FT /note="GRAIL, score = 93%, comment = excellent" FT exon complement(16509202..16509284) FT /note="MZEF prediction, score = 0.512" FT /note="XPOUND prediction, score = 0.695" FT exon complement(16509149..16509184) FT /note="XPOUND prediction, score = 0.532" FT repeat_region complement(16509002..16509057) FT /rpt_family="ALU" FT /note="89% identity: matches 691..746 of consensus" FT repeat_region complement(16508993..16509004) FT /note="AAT repeat" FT repeat_region complement(16508917..16508960) FT /rpt_family="ALU" FT /note="95% identity: matches 159..202 of consensus" FT exon 16508237..16508312 FT /note="GRAIL, score = 91%, comment = excellent shadow" FT exon complement(16508221..16508278) FT /note="GRAIL, score = 51%, comment = good" FT repeat_region 16507445..16507724 FT /rpt_family="L1" FT /note="85% identity: matches 245..526 of consensus" FT repeat_region complement(16507445..16507719) FT /rpt_family="ALU" FT /note="87% identity: matches 153..426 of consensus" FT repeat_region complement(16507343..16507404) FT /rpt_family="ALU" FT /note="93% identity: matches 730..791 of consensus" FT repeat_region complement(16506785..16507041) FT /rpt_family="ALU" FT /note="87% identity: matches 10..261 of consensus" FT repeat_region 16506785..16507037 FT /rpt_family="L1" FT /note="84% identity: matches 178..424 of consensus" FT repeat_region complement(16506753..16506772) FT /note="CAAA repeat" FT repeat_region complement(16506571..16506736) FT /rpt_family="ALU" FT /note="89% identity: matches 462..627 of consensus" FT repeat_region 16506588..16506734 FT /rpt_family="L1" FT /note="88% identity: matches 207..353 of consensus" FT exon complement(16506556..16506587) FT /note="XPOUND prediction, score = 0.804" FT repeat_region complement(16506493..16506508) FT /note="GA repeat" FT repeat_region complement(16505126..16505170) FT /rpt_family="atctctttt repeat" FT /rpt_type=TANDEM FT /note="homology = 82.2%, counts = 5" FT exon 16504971..16505037 FT /note="MZEF prediction, score = 0.992" FT repeat_region complement(16504625..16504639) FT /note="TTTA repeat" FT repeat_region complement(16504268..16504363) FT /rpt_family="ggaatacatgtattat repeat" FT /rpt_type=TANDEM FT /note="homology = 74.0%, counts = 6" FT repeat_region complement(16504321..16504346) FT /rpt_type=INVERTED FT /note="IR12, 100% complementary to IR12' (92617..92642)" FT repeat_region complement(16504289..16504314) FT /rpt_type=INVERTED FT /note="IR12', 100% complementary to IR12 (92585..92610)" FT repeat_region 16502302..16502345 FT /rpt_family="ALU" FT /note="95% identity: matches 229..272 of consensus" FT repeat_region 16502099..16502183 FT /rpt_family="ALU" FT /note="85% identity: matches 21..105 of consensus" FT repeat_region 16499552..16499815 FT /rpt_family="L1" FT /note="83% identity: matches 167..425 of consensus" FT repeat_region complement(16499546..16499814) FT /rpt_family="ALU" FT /note="86% identity: matches 1..267 of consensus" FT exon 16498747..16498864 FT /note="GRAIL, score = 79%, comment = excellent" FT exon complement(16498779..16498798) FT /note="XPOUND prediction, score = 0.629" FT repeat_region 16498315..16498616 FT /rpt_family="L1" FT /note="87% identity: matches 583..885 of consensus" FT repeat_region complement(16498295..16498306) FT /note="AT repeat" FT repeat_region complement(16498275..16498288) FT /note="AT repeat" FT repeat_region complement(16498239..16498252) FT /note="AT repeat" FT repeat_region complement(16498221..16498232) FT /note="AT repeat" FT repeat_region complement(16498023..16498230) FT /rpt_family="atatatatatgatgga repeat" FT /rpt_type=TANDEM FT /note="homology = 87.0%, counts = 13" FT repeat_region complement(16498059..16498070) FT /note="AT repeat" FT repeat_region complement(16497977..16498016) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 20" FT repeat_region complement(16497977..16498016) FT /note="AC repeat" FT repeat_region 16497885..16497976 FT /rpt_family="L1" FT /note="90% identity: matches 427..518 of consensus" FT exon 16496790..16497016 FT /note="GENSCAN prediction, score = 3.39" FT exon complement(16496910..16496937) FT /note="XPOUND prediction, score = 0.664" FT exon complement(16496485..16496497) FT /note="XPOUND prediction, score = 0.244" FT repeat_region complement(16496233..16496256) FT /note="TTTTG repeat" FT repeat_region complement(16496222..16496256) FT /rpt_family="ttttg repeat" FT /rpt_type=TANDEM FT /note="homology = 85.7%, counts = 7" FT repeat_region complement(16496224..16496253) FT /rpt_type=INVERTED FT /note="IR13, 86% complementary to IR13' (101023..101052)" FT repeat_region complement(16495925..16496198) FT /rpt_family="ALU" FT /note="87% identity: matches 9..281 of consensus" FT repeat_region 16495970..16496192 FT /rpt_family="L1" FT /note="85% identity: matches 206..424 of consensus" FT repeat_region complement(16495881..16495928) FT /rpt_family="aaaaaaagaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 4" FT repeat_region complement(16495879..16495908) FT /rpt_type=INVERTED FT /note="IR13', 86% complementary to IR13 (100678..100707)" FT exon 16495017..16495070 FT /note="GRAIL, score = 56%, comment = good" FT repeat_region complement(16494975..16494991) FT /note="TTTTA repeat" FT repeat_region 16494777..16494976 FT /rpt_family="L1" FT /note="91% identity: matches 358..557 of consensus" FT exon complement(16494705..16494769) FT /note="XPOUND prediction, score = 0.296" FT repeat_region complement(16494170..16494444) FT /rpt_family="ALU" FT /note="88% identity: matches 152..426 of consensus" FT repeat_region 16494170..16494439 FT /rpt_family="L1" FT /note="82% identity: matches 245..517 of consensus" FT exon 16493588..16493687 FT /note="GRAIL, score = 45%, comment = marginal" FT exon 16493401..16493483 FT /note="MZEF prediction, score = 0.672" FT exon 16493308..16493372 FT /note="GRAIL, score = 90%, comment = excellent" FT exon 16492916..16493094 FT /note="GRAIL, score = 59%, comment = good" FT exon 16492653..16492704 FT /note="GRAIL, score = 87%, comment = excellent" FT exon 16490990..16491067 FT /note="GRAIL, score = 57%, comment = good" FT repeat_region complement(16490558..16490595) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 81.6%, counts = 19" FT repeat_region complement(16490576..16490593) FT /note="AC repeat" FT exon complement(16490546..16490559) FT /note="XPOUND prediction, score = 0.370" FT exon complement(16490485..16490495) FT /note="XPOUND prediction, score = 0.395" FT repeat_region complement(16490185..16490472) FT /rpt_family="THE" FT /note="88% identity: matches 8..296 of consensus" FT repeat_region complement(16490126..16490164) FT /rpt_family="THE" FT /note="100% identity: matches 66..104 of consensus" FT exon complement(16489670..16489784) FT /note="MZEF prediction, score = 0.907" FT repeat_region complement(16489311..16489324) FT /note="TAAAT repeat" FT exon 16487861..16488149 FT /note="MZEF prediction, score = 0.607" FT exon complement(16487010..16487018) FT /note="XPOUND prediction, score = 0.221" FT repeat_region complement(16486742..16486868) FT /rpt_family="ALU" FT /note="85% identity: matches 154..280 of consensus" FT repeat_region complement(16486727..16486834) FT /rpt_type=INVERTED FT /note="IR14, 77% complementary to IR14' (111110..111217)" FT repeat_region complement(16485714..16485821) FT /rpt_type=INVERTED FT /note="IR14', 77% complementary to IR14 (110097..110204)" FT repeat_region 16485763..16485806 FT /rpt_family="ALU" FT /note="95% identity: matches 237..280 of consensus" FT repeat_region 16485622..16485659 FT /rpt_family="ALU" FT /note="97% identity: matches 707..744 of consensus" FT repeat_region complement(16485082..16485129) FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 93.8%, counts = 24" FT repeat_region complement(16485082..16485129) FT /note="GT repeat" FT exon 16483377..16483483 FT /note="MZEF prediction, score = 0.645" FT exon complement(16481603..16481631) FT /note="XPOUND prediction, score = 0.247" FT exon complement(16481425..16481499) FT /note="GRAIL, score = 68%, comment = good" FT exon complement(16481385..16481494) FT /note="XPOUND prediction, score = 0.499" FT exon complement(16481205..16481228) FT /note="XPOUND prediction, score = 0.279" FT exon complement(16480518..16480969) FT /note="XPOUND prediction, score = 0.871" FT exon complement(16480340..16480431) FT /note="XPOUND prediction, score = 0.253" FT repeat_region complement(16480044..16480100) FT /rpt_family="gatgttacatgtgttgaat repeat" FT /rpt_type=TANDEM FT /note="homology = 93.0%, counts = 3" FT exon complement(16479890..16479962) FT /note="MZEF prediction, score = 0.933" FT repeat_region complement(16479252..16479295) FT /rpt_family="ctttttctttt repeat" FT /rpt_type=TANDEM FT /note="homology = 90.9%, counts = 4" FT repeat_region complement(16479258..16479293) FT /note="TTTTC repeat" FT repeat_region 16479101..16479247 FT /rpt_family="ALU" FT /note="85% identity: matches 435..583 of consensus" FT repeat_region complement(16479124..16479241) FT /rpt_family="L1" FT /note="83% identity: matches 167..286 of consensus" FT repeat_region 16478968..16479086 FT /rpt_family="ALU" FT /note="88% identity: matches 445..561 of consensus" FT repeat_region complement(16478968..16479086) FT /rpt_family="L1" FT /note="88% identity: matches 478..596 of consensus" FT exon complement(16478091..16478307) FT /note="GRAIL, score = 46%, comment = marginal" FT repeat_region 16477130..16477184 FT /rpt_family="ALU" FT /note="90% identity: matches 23..77 of consensus" FT repeat_region complement(16476545..16476556) FT /note="AC repeat" FT repeat_region complement(16475949..16475962) FT /note="ATTAA repeat" FT exon 16474480..16474544 FT /note="GRAIL, score = 84%, comment = excellent" FT /note="MZEF prediction, score = 0.734" FT repeat_region complement(16473873..16473886) FT /note="TTAT repeat" FT repeat_region 16473593..16473870 FT /rpt_family="ALU" FT /note="88% identity: matches 2..278 of consensus" FT repeat_region complement(16473613..16473864) FT /rpt_family="L1" FT /note="87% identity: matches 167..414 of consensus" FT exon 16473211..16473354 FT /note="MZEF prediction, score = 0.858" FT exon complement(16472536..16472562) FT /note="XPOUND prediction, score = 0.620" FT exon complement(16472238..16472248) FT /note="XPOUND prediction, score = 0.532" FT repeat_region 16472085..16472126 FT /rpt_family="THE" FT /note="92% identity: matches 322..363 of consensus" FT repeat_region 16471778..16472079 FT /rpt_family="THE" FT /note="86% identity: matches 8..308 of consensus" FT repeat_region 16471591..16471753 FT /rpt_family="THR" FT /note="91% identity: matches 985..1145 of consensus" FT repeat_region complement(16471316..16471578) FT /rpt_family="ALU" FT /note="90% identity: matches 159..420 of consensus" FT repeat_region 16471311..16471575 FT /rpt_family="L1" FT /note="87% identity: matches 162..424 of consensus" FT repeat_region 16470295..16471290 FT /rpt_family="THR" FT /note="82% identity: matches 415..1409 of consensus" FT exon 16470711..16471279 FT /note="GENSCAN prediction, score = 8.39" FT exon complement(16471092..16471135) FT /note="GRAIL, score = 69%, comment = good shadow" FT exon complement(16470579..16470749) FT /note="GENSCAN prediction, score = 3.04" FT repeat_region complement(16470014..16470284) FT /rpt_family="ALU" FT /note="92% identity: matches 10..280 of consensus" FT repeat_region 16470014..16470284 FT /rpt_family="L1" FT /note="88% identity: matches 245..516 of consensus" FT repeat_region 16469578..16469965 FT /rpt_family="THR" FT /note="86% identity: matches 1..391 of consensus" FT exon complement(16469791..16469832) FT /note="XPOUND prediction, score = 0.270" FT exon 16469762..16469830 FT /note="GRAIL, score = 68%, comment = good" FT exon 16469780..16469828 FT /note="XPOUND prediction, score = 0.222" FT repeat_region 16469532..16469577 FT /rpt_family="THE" FT /note="93% identity: matches 316..361 of consensus" FT repeat_region 16469230..16469530 FT /rpt_family="THE" FT /note="84% identity: matches 8..308 of consensus" FT exon complement(16469166..16469421) FT /note="GRAIL, score = 56%, comment = good shadow" FT repeat_region complement(16468413..16468689) FT /rpt_family="ALU" FT /note="89% identity: matches 147..426 of consensus" FT repeat_region 16468413..16468678 FT /rpt_family="L1" FT /note="84% identity: matches 245..516 of consensus" FT repeat_region complement(16468385..16468411) FT /rpt_type=INVERTED FT /note="IR15, 88% complementary to IR15' (129074..129100)" FT exon complement(16468244..16468300) FT /note="MZEF prediction, score = 0.594" FT repeat_region complement(16468121..16468192) FT /rpt_family="ALU" FT /note="86% identity: matches 12..83 of consensus" FT repeat_region 16468073..16468156 FT /rpt_family="L1" FT /note="84% identity: matches 177..260 of consensus" FT repeat_region complement(16468079..16468155) FT /rpt_family="ALU" FT /note="87% identity: matches 666..742 of consensus" FT exon complement(16468073..16468107) FT /note="XPOUND prediction, score = 0.479" FT repeat_region complement(16468025..16468037) FT /note="AGAA repeat" FT repeat_region complement(16467831..16467857) FT /rpt_type=INVERTED FT /note="IR15', 88% complementary to IR15 (128520..128546)" FT repeat_region 16465817..16467830 FT /rpt_family="L1" FT /note="99% identity: matches 119..2132 of consensus" FT exon complement(16467742..16467782) FT /note="XPOUND prediction, score = 0.432" FT exon 16466801..16467625 FT /note="GRAIL, score = 49%, comment = marginal" FT exon 16465907..16467625 FT /note="GENSCAN prediction, score = 23.17" FT exon 16465828..16467380 FT /note="GENSCAN prediction, score = 23.11" FT exon complement(16466763..16466769) FT /note="XPOUND prediction, score = 0.201" FT exon 16466106..16466257 FT /note="MZEF prediction, score = 0.617" FT exon 16465828..16465999 FT /note="GRAIL, score = 79%, comment = excellent" FT exon complement(16465774..16465819) FT /note="XPOUND prediction, score = 0.367" FT repeat_region 16465170..16465422 FT /rpt_family="ALU" FT /note="85% identity: matches 21..274 of consensus" FT repeat_region complement(16465166..16465417) FT /rpt_family="L1" FT /note="83% identity: matches 177..424 of consensus" FT repeat_region complement(16465261..16465358) FT /rpt_type=INVERTED FT /note="IR16, 93% complementary to IR16' (132187..132283)" FT repeat_region complement(16464648..16464744) FT /rpt_type=INVERTED FT /note="IR16', 93% complementary to IR16 (131573..131670)" FT repeat_region complement(16464647..16464733) FT /rpt_family="ALU" FT /note="90% identity: matches 495..581 of consensus" FT repeat_region 16464647..16464726 FT /rpt_family="L1" FT /note="88% identity: matches 319..398 of consensus" FT exon complement(16464268..16464344) FT /note="XPOUND prediction, score = 0.507" FT exon 16464243..16464334 FT /note="MZEF prediction, score = 0.791" FT repeat_region complement(16464195..16464208) FT /note="TTAT repeat" FT repeat_region complement(16463817..16464114) FT /rpt_type=INVERTED FT /note="IR17, 81% complementary to IR17' (133343..133641)" FT repeat_region 16463834..16464091 FT /rpt_family="ALU" FT /note="84% identity: matches 22..281 of consensus" FT repeat_region complement(16463823..16463944) FT /rpt_family="L1" FT /note="84% identity: matches 464..585 of consensus" FT repeat_region 16463778..16463820 FT /rpt_family="ALU" FT /note="95% identity: matches 5..47 of consensus" FT repeat_region complement(16463313..16463593) FT /rpt_family="ALU" FT /note="98% identity: matches 1..281 of consensus" FT repeat_region 16463313..16463593 FT /rpt_family="L1" FT /note="92% identity: matches 245..526 of consensus" FT misc_feature complement(16463317..16463590) FT /note="CpG_island (%GC=62.0, o/e=0.81, #CpGs=22)" FT repeat_region complement(16463290..16463588) FT /rpt_type=INVERTED FT /note="IR17', 81% complementary to IR17 (132817..133114)" FT exon complement(16462656..16462697) FT /note="XPOUND prediction, score = 0.396" FT exon 16462491..16462531 FT /note="GRAIL, score = 59%, comment = good" FT exon complement(16461655..16461755) FT /note="XPOUND prediction, score = 0.633" FT repeat_region complement(16460530..16460596) FT /rpt_family="L1" FT /note="88% identity: matches 185..251 of consensus" FT repeat_region 16460420..16460596 FT /rpt_family="ALU" FT /note="81% identity: matches 601..776 of consensus" FT repeat_region complement(16460338..16460516) FT /rpt_family="L1" FT /note="86% identity: matches 757..936 of consensus" FT repeat_region 16460343..16460480 FT /rpt_family="ALU" FT /note="91% identity: matches 276..413 of consensus" FT exon 16459857..16459936 FT /note="MZEF prediction, score = 0.833" FT exon complement(16459868..16459870) FT /note="XPOUND prediction, score = 0.218" FT exon complement(16457371..16457398) FT /note="XPOUND prediction, score = 0.425" FT repeat_region complement(16457006..16457017) FT /note="TC repeat" FT exon complement(16456588..16456688) FT /note="GRAIL, score = 81%, comment = excellent" FT exon complement(16456561..16456688) FT /note="MZEF prediction, score = 0.907" FT exon 16456342..16456577 FT /note="MZEF prediction, score = 0.510" FT repeat_region 16456422..16456528 FT /rpt_family="ALU" FT /note="92% identity: matches 383..489 of consensus" FT repeat_region complement(16456421..16456528) FT /rpt_family="L1" FT /note="87% identity: matches 245..352 of consensus" FT exon complement(16456244..16456262) FT /note="XPOUND prediction, score = 0.629" FT repeat_region complement(16455519..16455803) FT /rpt_type=INVERTED FT /note="IR18, 79% complementary to IR18' (142342..142625)" FT repeat_region complement(16455523..16455790) FT /rpt_family="L1" FT /note="83% identity: matches 161..422 of consensus" FT repeat_region 16455528..16455781 FT /rpt_family="ALU" FT /note="88% identity: matches 478..729 of consensus" FT exon 16454975..16455080 FT /note="GRAIL, score = 54%, comment = good shadow" FT exon complement(16454653..16454700) FT /note="MZEF prediction, score = 0.589" FT exon complement(16454681..16454696) FT /note="XPOUND prediction, score = 0.407" FT exon complement(16454611..16454626) FT /note="XPOUND prediction, score = 0.402" FT repeat_region complement(16454334..16454590) FT /rpt_family="ALU" FT /note="81% identity: matches 12..267 of consensus" FT repeat_region complement(16454306..16454589) FT /rpt_type=INVERTED FT /note="IR18', 79% complementary to IR18 (141128..141412)" FT repeat_region 16454550..16454587 FT /rpt_family="L1" FT /note="97% identity: matches 387..424 of consensus" FT repeat_region 16454423..16454470 FT /rpt_family="L1" FT /note="91% identity: matches 267..314 of consensus" FT repeat_region complement(16454084..16454094) FT /note="AG repeat" FT repeat_region complement(16453807..16453823) FT /note="TTTGT repeat" FT repeat_region complement(16453722..16453777) FT /rpt_type=INVERTED FT /note="IR19, 80% complementary to IR19' (144400..144455)" FT repeat_region complement(16453716..16453777) FT /rpt_family="L1" FT /note="87% identity: matches 198..259 of consensus" FT repeat_region 16453713..16453775 FT /rpt_family="ALU" FT /note="92% identity: matches 699..761 of consensus" FT exon complement(16453578..16453634) FT /note="GENSCAN prediction, score = 0.26" FT exon complement(16453578..16453604) FT /note="XPOUND prediction, score = 0.334" FT repeat_region complement(16452962..16452976) FT /note="GTTTT repeat" FT repeat_region complement(16452528..16452702) FT /rpt_family="ALU" FT /note="88% identity: matches 5..177 of consensus" FT repeat_region 16452575..16452696 FT /rpt_family="L1" FT /note="86% identity: matches 464..585 of consensus" FT repeat_region complement(16452476..16452531) FT /rpt_type=INVERTED FT /note="IR19', 80% complementary to IR19 (143154..143209)" FT repeat_region complement(16452453..16452531) FT /rpt_family="ALU" FT /note="91% identity: matches 491..569 of consensus" FT repeat_region 16452453..16452518 FT /rpt_family="L1" FT /note="92% identity: matches 175..240 of consensus" FT repeat_region complement(16452420..16452437) FT /note="AAT repeat" FT exon complement(16451483..16451508) FT /note="XPOUND prediction, score = 0.500" FT exon complement(16449494..16449540) FT /note="XPOUND prediction, score = 0.327" FT exon 16447701..16447783 FT /note="MZEF prediction, score = 0.515" FT repeat_region complement(16446182..16446229) FT /rpt_family="atataataagagtgat repeat" FT /rpt_type=TANDEM FT /note="homology = 87.5%, counts = 3" FT exon complement(16444800..16444810) FT /note="XPOUND prediction, score = 0.265" FT exon 16444480..16444542 FT /note="GRAIL, score = 69%, comment = good" FT repeat_region complement(16444234..16444248) FT /note="TG repeat" FT exon 16443723..16443788 FT /note="GRAIL, score = 49%, comment = marginal" FT exon complement(16443687..16443696) FT /note="XPOUND prediction, score = 0.232" FT repeat_region 16442990..16443048 FT /rpt_family="ALU" FT /note="88% identity: matches 440..498 of consensus" FT repeat_region complement(16442837..16443029) FT /rpt_family="L1" FT /note="81% identity: matches 388..581 of consensus" FT repeat_region 16442823..16443019 FT /rpt_family="ALU" FT /note="83% identity: matches 2..196 of consensus" FT exon complement(16442698..16442739) FT /note="XPOUND prediction, score = 0.234" FT repeat_region 16441259..16441296 FT /rpt_family="ALU" FT /note="94% identity: matches 238..275 of consensus" FT repeat_region 16441182..16441277 FT /rpt_family="ALU" FT /note="85% identity: matches 759..854 of consensus" FT exon complement(16441228..16441238) FT /note="XPOUND prediction, score = 0.211" FT exon complement(16440997..16441063) FT /note="XPOUND prediction, score = 0.556" FT exon 16440781..16440828 FT /note="GRAIL, score = 66%, comment = good shadow" FT exon 16440757..16440828 FT /note="MZEF prediction, score = 0.880" FT exon 16439875..16440072 FT /note="MZEF prediction, score = 0.828" FT exon 16439799..16440044 FT /note="GRAIL, score = 54%, comment = good shadow" FT repeat_region 16438889..16439226 FT /rpt_family="THE" FT /note="86% identity: matches 1..339 of consensus" FT exon complement(16438779..16438838) FT /note="XPOUND prediction, score = 0.524" FT exon 16437415..16437574 FT /note="GRAIL, score = 64%, comment = good shadow" FT exon complement(16437346..16437522) FT /note="XPOUND prediction, score = 0.881" FT exon complement(16436832..16437522) FT /note="MZEF prediction, score = 0.570" FT exon complement(16435553..16437522) FT /note="GENSCAN prediction, score = 151.87" FT exon complement(16435477..16437486) FT /note="GRAIL, score = 94%, comment = excellent" FT exon 16436277..16436458 FT /note="MZEF prediction, score = 0.565" FT exon complement(16435740..16436409) FT /note="XPOUND prediction, score = 0.849" FT exon 16436199..16436286 FT /note="GRAIL, score = 73%, comment = good shadow" FT exon 16435759..16436091 FT /note="GRAIL, score = 48%, comment = marginal shadow" FT exon complement(16435553..16435676) FT /note="XPOUND prediction, score = 0.239" FT exon complement(16435553..16435633) FT /note="MZEF prediction, score = 0.668" FT exon complement(16435337..16435343) FT /note="XPOUND prediction, score = 0.208" FT repeat_region complement(16435176..16435194) FT /note="TA repeat" FT exon complement(16435036..16435097) FT /note="MZEF prediction, score = 0.971" FT exon 16435008..16435083 FT /note="MZEF prediction, score = 0.866" FT exon complement(16435032..16435065) FT /note="XPOUND prediction, score = 0.553" FT exon complement(16434913..16434969) FT /note="MZEF prediction, score = 0.569" FT exon 16434482..16434669 FT /note="GRAIL, score = 70%, comment = good shadow" FT exon 16432703..16432807 FT /note="GRAIL, score = 81%, comment = excellent shadow" FT exon 16432678..16432807 FT /note="MZEF prediction, score = 0.789" FT exon complement(16431937..16432029) FT /note="MZEF prediction, score = 0.581" FT repeat_region 16431795..16431980 FT /rpt_family="MER1" FT /note="84% identity: matches 112..300 of consensus" FT exon complement(16431937..16431958) FT /note="XPOUND prediction, score = 0.560" FT exon 16431546..16431738 FT /note="GRAIL, score = 53%, comment = good" FT repeat_region 16431671..16431734 FT /rpt_family="MER1" FT /note="93% identity: matches 3..66 of consensus" FT exon complement(16431631..16431687) FT /note="XPOUND prediction, score = 0.252" FT exon 16430717..16430880 FT /note="GRAIL, score = 52%, comment = good" FT exon 16430515..16430569 FT /note="MZEF prediction, score = 0.693" FT exon 16427836..16427938 FT /note="GRAIL, score = 83%, comment = excellent" FT exon complement(16427806..16427823) FT /note="XPOUND prediction, score = 0.210" FT exon 16427524..16427564 FT /note="GRAIL, score = 45%, comment = marginal" FT repeat_region 16426363..16426463 FT /rpt_family="THR" FT /note="85% identity: matches 1..101 of consensus" FT repeat_region complement(16426363..16426452) FT /rpt_family="ALU" FT /note="91% identity: matches 636..725 of consensus" FT exon complement(16425285..16425303) FT /note="XPOUND prediction, score = 0.273" FT repeat_region complement(16424658..16424669) FT /note="TC repeat" FT exon complement(16422196..16422317) FT /note="GRAIL, score = 84%, comment = excellent" FT exon complement(16422199..16422304) FT /note="XPOUND prediction, score = 0.454" FT repeat_region complement(16421330..16421364) FT /note="TC repeat" FT repeat_region complement(16421311..16421364) FT /rpt_family="tc repeat" FT /rpt_type=TANDEM FT /note="homology = 81.5%, counts = 27" FT repeat_region complement(16420662..16420723) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 77.4%, counts = 31" FT repeat_region complement(16420705..16420717) FT /note="TA repeat" FT repeat_region complement(16420660..16420676) FT /note="ATAC repeat" FT repeat_region complement(16419823..16419834) FT /note="CAC repeat" FT exon complement(16419216..16419647) FT /note="GRAIL, score = 90%, comment = excellent" FT exon complement(16418987..16419647) FT /note="GENSCAN prediction, score = 35.59" FT exon complement(16419059..16419633) FT /note="XPOUND prediction, score = 0.755" FT exon 16419452..16419628 FT /note="GRAIL, score = 55%, comment = good shadow" FT exon complement(16418929..16418949) FT /note="XPOUND prediction, score = 0.277" FT STS complement(16418814..16418928) FT /standard_name="HSB307WA5 (D9S1839), Map: 9, Homo sapiens" FT /note="GenBank Accession Number: Z53465" FT repeat_region complement(16418860..16418905) FT /rpt_type=INVERTED FT /note="IR20, 84% complementary to IR20' (178225..178270)" FT repeat_region complement(16418872..16418898) FT /note="GT repeat" FT repeat_region complement(16418863..16418898) FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 88.9%, counts = 18" FT exon complement(16418803..16418813) FT /note="XPOUND prediction, score = 0.408" FT exon complement(16418741..16418745) FT /note="XPOUND prediction, score = 0.202" FT exon complement(16418726..16418737) FT /note="XPOUND prediction, score = 0.243" FT repeat_region complement(16418664..16418715) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 92.3%, counts = 26" FT repeat_region complement(16418663..16418713) FT /note="AC repeat" FT repeat_region complement(16418661..16418706) FT /rpt_type=INVERTED FT /note="IR20', 84% complementary to IR20 (178026..178071)" FT repeat_region complement(16418542..16418577) FT /rpt_type=INVERTED FT /note="IR21, 91% complementary to IR21' (179758..179795)" FT repeat_region complement(16417308..16417325) FT /note="TTTTG repeat" FT repeat_region complement(16417136..16417173) FT /rpt_type=INVERTED FT /note="IR21', 91% complementary to IR21 (178354..178389)" FT exon 16415287..16415378 FT /note="GRAIL, score = 77%, comment = excellent shadow" FT exon 16414298..16414373 FT /note="MZEF prediction, score = 0.700" FT exon complement(16414176..16414200) FT /note="XPOUND prediction, score = 0.282" FT exon 16412932..16413032 FT /note="MZEF prediction, score = 0.596" FT exon complement(16412867..16413025) FT /note="XPOUND prediction, score = 0.315" FT exon complement(16412865..16413025) FT /note="GRAIL, score = 90%, comment = excellent" FT /note="MZEF prediction, score = 0.746" FT repeat_region complement(16412719..16412764) FT /rpt_family="tc repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 23" FT repeat_region complement(16412719..16412764) FT /note="TC repeat" FT repeat_region complement(16412706..16412716) FT /note="CT repeat" FT exon 16410719..16411060 FT /note="MZEF prediction, score = 0.789" FT exon complement(16410417..16410542) FT /note="GRAIL, score = 43%, comment = marginal shadow" FT exon 16410230..16410266 FT /note="GRAIL, score = 50%, comment = good" FT exon 16409158..16409398 FT /note="GRAIL, score = 66%, comment = good" FT exon 16408654..16408714 FT /note="MZEF prediction, score = 0.544" FT repeat_region complement(16408636..16408680) FT /rpt_family="L1" FT /note="93% identity: matches 415..459 of consensus" FT exon 16406491..16406540 FT /note="XPOUND prediction, score = 0.250" FT exon 16406336..16406461 FT /note="GRAIL, score = 50%, comment = good" FT exon 16406346..16406414 FT /note="XPOUND prediction, score = 0.268" FT exon 16406074..16406285 FT /note="MZEF prediction, score = 0.898" FT repeat_region complement(16405615..16405628) FT /note="GGGGA repeat" FT exon complement(16405134..16405191) FT /note="GRAIL, score = 64%, comment = good" FT exon 16404181..16404351 FT /note="MZEF prediction, score = 0.687" FT repeat_region 16404260..16404337 FT /rpt_family="L1" FT /note="84% identity: matches 9..86 of consensus" FT repeat_region 16404037..16404158 FT /rpt_family="L1" FT /note="84% identity: matches 104..222 of consensus" FT repeat_region complement(16404006..16404017) FT /note="TG repeat" FT exon complement(16403063..16403295) FT /note="GRAIL, score = 72%, comment = good" FT exon complement(16403114..16403281) FT /note="GENSCAN prediction, score = 6.28" FT exon complement(16402200..16402319) FT /note="GRAIL, score = 69%, comment = good" FT exon 16401877..16401927 FT /note="MZEF prediction, score = 0.546" FT exon 16401414..16401524 FT /note="GRAIL, score = 73%, comment = good shadow" FT exon complement(16401323..16401446) FT /note="GENSCAN prediction, score = 3.54" FT /note="GRAIL, score = 74%, comment = good" FT repeat_region complement(16401241..16401255) FT /note="GAAAG repeat" FT repeat_region complement(16400751..16400788) FT /rpt_family="ag repeat" FT /rpt_type=TANDEM FT /note="homology = 89.5%, counts = 19" FT repeat_region complement(16400750..16400762) FT /note="AG repeat" FT exon complement(16400418..16400545) FT /note="GENSCAN prediction, score = 7.38" FT /note="GRAIL, score = 90%, comment = excellent" FT exon 16400420..16400493 FT /note="XPOUND prediction, score = 0.958" FT exon complement(16400295..16400360) FT /note="MZEF prediction, score = 0.702" FT exon 16400286..16400318 FT /note="XPOUND prediction, score = 0.218" FT misc_feature 16578255..16738991 FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon complement(16597249..16597319) FT /note="MZEF prediction, score = 0.753" FT repeat_region 16597828..16597841 FT /note="ATTT repeat" FT repeat_region complement(16599514..16599777) FT /rpt_family="L1" FT /note="85% identity: matches 164..424 of consensus" FT repeat_region 16599520..16599755 FT /rpt_family="ALU" FT /note="90% identity: matches 156..392 of consensus" FT exon complement(16600721..16600738) FT /note="XPOUND prediction, score = 0.212" FT exon complement(16601817..16601836) FT /note="XPOUND prediction, score = 0.510" FT repeat_region 16604224..16604236 FT /note="TC repeat" FT exon complement(16604495..16604630) FT /note="MZEF prediction, score = 0.606" FT repeat_region 16604518..16604612 FT /rpt_family="ALU" FT /note="89% identity: matches 311..405 of consensus" FT repeat_region complement(16604518..16604612) FT /rpt_family="L1" FT /note="85% identity: matches 836..930 of consensus" FT repeat_region 16604652..16604785 FT /rpt_family="ALU" FT /note="88% identity: matches 134..266 of consensus" FT repeat_region 16604654..16604822 FT /rpt_type=INVERTED FT /note="IR5, 76% complementary to IR5' (27529..27700)" FT repeat_region complement(16604703..16604796) FT /rpt_family="L1" FT /note="87% identity: matches 165..259 of consensus" FT repeat_region 16604806..16604825 FT /note="AAAAG repeat" FT exon 16605409..16605539 FT /note="GRAIL, score = 52%, comment = good" FT repeat_region 16605783..16605954 FT /rpt_type=INVERTED FT /note="IR5', 76% complementary to IR5 (26400..26568)" FT exon complement(16605810..16605820) FT /note="XPOUND prediction, score = 0.491" FT repeat_region complement(16605878..16605954) FT /rpt_family="ALU" FT /note="93% identity: matches 461..537 of consensus" FT repeat_region complement(16605958..16606025) FT /rpt_family="ALU" FT /note="89% identity: matches 16..83 of consensus" FT repeat_region 16605978..16606025 FT /rpt_family="L1" FT /note="91% identity: matches 375..422 of consensus" FT exon complement(16605991..16606046) FT /note="MZEF prediction, score = 0.564" FT repeat_region 16606350..16606370 FT /note="TTTA repeat" FT repeat_region 16606373..16606524 FT /rpt_family="THE" FT /note="84% identity: matches 7..159 of consensus" FT repeat_region complement(16606571..16606619) FT /rpt_family="ALU" FT /note="97% identity: matches 389..437 of consensus" FT repeat_region 16606660..16606841 FT /rpt_family="L1" FT /note="82% identity: matches 247..424 of consensus" FT repeat_region complement(16606660..16606845) FT /rpt_family="ALU" FT /note="88% identity: matches 876..1059 of consensus" FT exon complement(16606749..16606781) FT /note="XPOUND prediction, score = 0.515" FT repeat_region complement(16606962..16607102) FT /rpt_family="L1" FT /note="85% identity: matches 319..459 of consensus" FT exon complement(16607220..16607247) FT /note="XPOUND prediction, score = 0.417" FT exon 16607394..16607510 FT /note="GRAIL, score = 60%, comment = good" FT exon 16607451..16607510 FT /note="MZEF prediction, score = 0.813" FT repeat_region complement(16608567..16608649) FT /rpt_family="ALU" FT /note="92% identity: matches 155..237 of consensus" FT exon complement(16609838..16609895) FT /note="MZEF prediction, score = 0.832" FT exon 16610388..16610467 FT /note="GRAIL, score = 60%, comment = good" FT exon 16610694..16610811 FT /note="GRAIL, score = 51%, comment = good" FT exon 16612966..16613019 FT /note="GENSCAN prediction, score = 7.33" FT exon 16613559..16613641 FT /note="GRAIL, score = 53%, comment = good" FT exon complement(16613676..16613737) FT /note="GRAIL, score = 55%, comment = good shadow" FT repeat_region 16614671..16614781 FT /rpt_family="ALU" FT /note="85% identity: matches 9..119 of consensus" FT exon 16614825..16614938 FT /note="GRAIL, score = 43%, comment = marginal" FT exon complement(16615578..16615627) FT /note="GRAIL, score = 62%, comment = good shadow" FT exon complement(16615928..16615953) FT /note="XPOUND prediction, score = 0.406" FT repeat_region 16616103..16616201 FT /rpt_family="ALU" FT /note="85% identity: matches 1..99 of consensus" FT repeat_region complement(16616116..16616165) FT /rpt_family="L1" FT /note="90% identity: matches 376..425 of consensus" FT repeat_region 16616247..16616367 FT /rpt_family="ALU" FT /note="84% identity: matches 131..251 of consensus" FT repeat_region 16616348..16616389 FT /rpt_family="ALU" FT /note="92% identity: matches 236..277 of consensus" FT repeat_region 16616392..16616410 FT /note="AAAAT repeat" FT repeat_region 16616434..16616500 FT /rpt_family="ALU" FT /note="94% identity: matches 157..223 of consensus" FT repeat_region 16616565..16616598 FT /rpt_family="ALU" FT /note="97% identity: matches 163..196 of consensus" FT repeat_region 16616603..16616677 FT /rpt_family="ALU" FT /note="89% identity: matches 194..268 of consensus" FT repeat_region 16616687..16616838 FT /rpt_family="aagg repeat" FT /rpt_type=TANDEM FT /note="homology = 69.1%, counts = 38" FT exon 16616723..16616860 FT /note="MZEF prediction, score = 0.667" FT repeat_region 16616767..16616782 FT /note="GGGAG repeat" FT repeat_region 16616789..16616837 FT /note="GGAA repeat" FT repeat_region 16617214..16617231 FT /note="AACA repeat" FT exon 16618342..16618590 FT /note="GENSCAN prediction, score = 5.52" FT exon complement(16618385..16618455) FT /note="XPOUND prediction, score = 0.504" FT repeat_region 16619325..16619359 FT /rpt_family="aaaaaca repeat" FT /rpt_type=TANDEM FT /note="homology = 88.6%, counts = 5" FT exon 16620511..16620601 FT /note="MZEF prediction, score = 0.695" FT exon complement(16620946..16620991) FT /note="XPOUND prediction, score = 0.539" FT exon 16620976..16621076 FT /note="GENSCAN prediction, score = 3.98" FT exon 16621004..16621076 FT /note="MZEF prediction, score = 0.832" FT exon complement(16621054..16621075) FT /note="XPOUND prediction, score = 0.227" FT exon complement(16621149..16621159) FT /note="XPOUND prediction, score = 0.201" FT repeat_region 16621805..16621818 FT /note="AAAAG repeat" FT repeat_region 16621887..16621948 FT /rpt_family="MER33" FT /note="93% identity: matches 94..154 of consensus" FT exon complement(16622017..16622069) FT /note="XPOUND prediction, score = 0.416" FT exon complement(16624522..16624542) FT /note="XPOUND prediction, score = 0.238" FT exon 16625475..16625633 FT /note="GENSCAN prediction, score = 1.14" FT exon 16625475..16625668 FT /note="GRAIL, score = 66%, comment = good" FT exon complement(16625573..16625587) FT /note="XPOUND prediction, score = 0.311" FT exon complement(16626622..16626651) FT /note="XPOUND prediction, score = 0.210" FT repeat_region 16626677..16626698 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 11" FT repeat_region 16626677..16626698 FT /note="AC repeat" FT exon complement(16626924..16626963) FT /note="XPOUND prediction, score = 0.430" FT exon 16626946..16627154 FT /note="GENSCAN prediction, score = 6.87" FT exon complement(16628130..16628323) FT /note="GRAIL, score = 54%, comment = good" FT repeat_region 16628611..16628628 FT /note="AC repeat" FT exon complement(16629024..16629032) FT /note="XPOUND prediction, score = 0.238" FT exon complement(16629697..16629739) FT /note="GRAIL, score = 53%, comment = good" FT repeat_region 16629766..16629885 FT /rpt_family="MER37" FT /note="83% identity: matches 3..125 of consensus" FT repeat_region complement(16630758..16631027) FT /rpt_family="ALU" FT /note="89% identity: matches 10..281 of consensus" FT repeat_region 16630800..16630966 FT /rpt_family="L1" FT /note="88% identity: matches 205..371 of consensus" FT exon complement(16630915..16631035) FT /note="XPOUND prediction, score = 0.578" FT exon 16631726..16632032 FT /note="MZEF prediction, score = 0.952" FT exon 16631919..16632032 FT /note="GRAIL, score = 77%, comment = excellent" FT exon 16632257..16632337 FT /note="MZEF prediction, score = 0.824" FT exon 16632307..16632420 FT /note="GRAIL, score = 45%, comment = marginal" FT exon 16633674..16633754 FT /note="GENSCAN prediction, score = 0.72" FT /note="MZEF prediction, score = 0.965" FT repeat_region complement(16634518..16634798) FT /rpt_family="ALU" FT /note="89% identity: matches 1..281 of consensus" FT repeat_region 16634518..16634798 FT /rpt_family="L1" FT /note="86% identity: matches 245..526 of consensus" FT repeat_region complement(16636319..16636437) FT /rpt_family="L1" FT /note="87% identity: matches 339..457 of consensus" FT repeat_region complement(16636482..16636599) FT /rpt_family="ALU" FT /note="85% identity: matches 2..119 of consensus" FT exon 16636762..16636812 FT /note="GENSCAN prediction, score = 0.49" FT repeat_region 16636925..16636938 FT /note="AT repeat" FT exon complement(16638081..16638318) FT /note="GRAIL, score = 51%, comment = good" FT exon complement(16639347..16639405) FT /note="MZEF prediction, score = 0.698" FT repeat_region 16639636..16639757 FT /rpt_family="ALU" FT /note="82% identity: matches 4..124 of consensus" FT repeat_region 16639805..16639916 FT /rpt_family="ALU" FT /note="84% identity: matches 475..586 of consensus" FT repeat_region 16640279..16640297 FT /note="TC repeat" FT exon complement(16642127..16642170) FT /note="MZEF prediction, score = 0.961" FT exon 16642314..16642413 FT /note="MZEF prediction, score = 0.771" FT exon 16642601..16642687 FT /note="GRAIL, score = 67%, comment = good" FT exon complement(16643157..16643178) FT /note="XPOUND prediction, score = 0.308" FT repeat_region 16643162..16643303 FT /rpt_family="ALU" FT /note="90% identity: matches 933..1074 of consensus" FT repeat_region complement(16643185..16643297) FT /rpt_family="L1" FT /note="84% identity: matches 167..279 of consensus" FT exon 16645529..16645640 FT /note="MZEF prediction, score = 0.927" FT exon 16646036..16646094 FT /note="MZEF prediction, score = 0.858" FT exon complement(16647742..16647758) FT /note="XPOUND prediction, score = 0.479" FT repeat_region 16648074..16648088 FT /note="TG repeat" FT exon complement(16649194..16649297) FT /note="MZEF prediction, score = 0.517" FT exon 16652273..16652321 FT /note="MZEF prediction, score = 0.557" FT exon complement(16652655..16652771) FT /note="GRAIL, score = 62%, comment = good shadow" FT exon 16652671..16652844 FT /note="GRAIL, score = 69%, comment = good" FT exon complement(16652829..16652848) FT /note="XPOUND prediction, score = 0.215" FT exon complement(16654417..16654439) FT /note="XPOUND prediction, score = 0.262" FT exon 16654797..16654923 FT /note="GRAIL, score = 63%, comment = good" FT exon complement(16654866..16654896) FT /note="XPOUND prediction, score = 0.238" FT exon 16655307..16655420 FT /note="GENSCAN prediction, score = 4.26" FT /note="GRAIL, score = 91%, comment = excellent" FT exon 16655805..16655962 FT /note="GENSCAN prediction, score = 13.79" FT /note="GRAIL, score = 96%, comment = excellent" FT /note="MZEF prediction, score = 0.995" FT exon 16656997..16657294 FT /note="GENSCAN prediction, score = 2.85" FT exon 16657983..16658072 FT /note="MZEF prediction, score = 0.557" FT exon complement(16658027..16658037) FT /note="XPOUND prediction, score = 0.253" FT exon complement(16658965..16658980) FT /note="XPOUND prediction, score = 0.214" FT repeat_region complement(16659350..16659604) FT /rpt_family="L1" FT /note="84% identity: matches 161..414 of consensus" FT repeat_region 16659358..16659604 FT /rpt_family="ALU" FT /note="89% identity: matches 180..426 of consensus" FT exon complement(16659628..16659717) FT /note="GRAIL, score = 58%, comment = good" FT repeat_region complement(16660171..16660430) FT /rpt_family="L1" FT /note="82% identity: matches 266..526 of consensus" FT repeat_region 16660171..16660452 FT /rpt_family="ALU" FT /note="87% identity: matches 1..282 of consensus" FT repeat_region 16660846..16660907 FT /rpt_family="MER2" FT /note="88% identity: matches 192..253 of consensus" FT exon complement(16661187..16661238) FT /note="MZEF prediction, score = 0.735" FT repeat_region 16661690..16661701 FT /note="TG repeat" FT repeat_region 16662451..16662757 FT /rpt_type=INVERTED FT /note="IR6, 78% complementary to IR6' (84868..85172)" FT repeat_region 16662463..16662726 FT /rpt_family="ALU" FT /note="87% identity: matches 310..573 of consensus" FT repeat_region complement(16662474..16662726) FT /rpt_family="L1" FT /note="82% identity: matches 168..416 of consensus" FT repeat_region 16662734..16662747 FT /note="AAAAT repeat" FT repeat_region 16663122..16663426 FT /rpt_type=INVERTED FT /note="IR6', 78% complementary to IR6 (84197..84503)" FT repeat_region 16663146..16663412 FT /rpt_family="L1" FT /note="86% identity: matches 161..425 of consensus" FT repeat_region complement(16663146..16663416) FT /rpt_family="ALU" FT /note="87% identity: matches 10..280 of consensus" FT repeat_region 16664689..16664736 FT /rpt_family="aaaaaacaaaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 91.7%, counts = 3" FT exon complement(16664773..16664785) FT /note="XPOUND prediction, score = 0.221" FT repeat_region 16664868..16664919 FT /rpt_type=INVERTED FT /note="IR7, 86% complementary to IR7' (86676..86728)" FT repeat_region 16664930..16664982 FT /rpt_type=INVERTED FT /note="IR7', 86% complementary to IR7 (86614..86665)" FT exon 16665056..16665153 FT /note="MZEF prediction, score = 0.520" FT exon complement(16665063..16665173) FT /note="MZEF prediction, score = 0.718" FT repeat_region 16665085..16665354 FT /rpt_family="ALU" FT /note="84% identity: matches 391..658 of consensus" FT repeat_region complement(16665094..16665274) FT /rpt_family="L1" FT /note="83% identity: matches 746..926 of consensus" FT repeat_region 16665369..16665496 FT /rpt_family="aaag repeat" FT /rpt_type=TANDEM FT /note="homology = 81.2%, counts = 32" FT repeat_region 16665385..16665409 FT /note="AG repeat" FT repeat_region 16665433..16665489 FT /note="AAAG repeat" FT exon complement(16665527..16665552) FT /note="XPOUND prediction, score = 0.350" FT exon complement(16666312..16666352) FT /note="XPOUND prediction, score = 0.283" FT repeat_region 16667063..16667122 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 88.3%, counts = 30" FT repeat_region 16667079..16667122 FT /note="AC repeat" FT exon complement(16667355..16667374) FT /note="XPOUND prediction, score = 0.337" FT exon complement(16668400..16668458) FT /note="GRAIL, score = 60%, comment = good" FT exon 16668677..16668743 FT /note="MZEF prediction, score = 0.849" FT exon 16669763..16669872 FT /note="MZEF prediction, score = 0.943" FT exon complement(16670180..16670187) FT /note="XPOUND prediction, score = 0.203" FT repeat_region complement(16670395..16670466) FT /rpt_family="ALU" FT /note="88% identity: matches 12..83 of consensus" FT repeat_region 16670398..16670469 FT /rpt_family="L1" FT /note="86% identity: matches 856..927 of consensus" FT repeat_region 16670414..16670480 FT /rpt_type=INVERTED FT /note="IR8, 85% complementary to IR8' (93957..94023)" FT exon 16670627..16670667 FT /note="MZEF prediction, score = 0.563" FT repeat_region 16672211..16672277 FT /rpt_type=INVERTED FT /note="IR8', 85% complementary to IR8 (92160..92226)" FT misc_feature 16672217..16672323 FT /note="CpG_island (%GC=64.5, o/e=1.25, #CpGs=10)" FT repeat_region complement(16672221..16672481) FT /rpt_family="L1" FT /note="90% identity: matches 258..519 of consensus" FT repeat_region 16672224..16672481 FT /rpt_family="ALU" FT /note="93% identity: matches 313..570 of consensus" FT exon 16672795..16672837 FT /note="MZEF prediction, score = 0.851" FT repeat_region 16673421..16673441 FT /rpt_type=INVERTED FT /note="IR9, 95% complementary to IR9' (96999..97019)" FT repeat_region 16673442..16673462 FT /note="AC repeat" FT repeat_region 16673442..16673465 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 95.8%, counts = 12" FT exon complement(16673549..16673565) FT /note="XPOUND prediction, score = 0.241" FT STS 16674863..16675047 FT /standard_name="WI-3899 (D9S1089), Map: 65.6, Homo sapiens" FT /note="GenBank Accession Number: G03184" FT repeat_region 16675253..16675273 FT /rpt_type=INVERTED FT /note="IR9', 95% complementary to IR9 (95167..95187)" FT repeat_region 16675317..16675430 FT /rpt_type=INVERTED FT /note="IR10, 81% complementary to IR10' (97648..97762)" FT repeat_region complement(16675331..16675417) FT /rpt_family="ALU" FT /note="87% identity: matches 135..222 of consensus" FT repeat_region complement(16675514..16675567) FT /rpt_family="ALU" FT /note="92% identity: matches 131..184 of consensus" FT repeat_region 16675823..16675870 FT /rpt_family="ALU" FT /note="97% identity: matches 58..105 of consensus" FT repeat_region complement(16675823..16675870) FT /rpt_family="L1" FT /note="91% identity: matches 830..877 of consensus" FT repeat_region 16675902..16676016 FT /rpt_type=INVERTED FT /note="IR10', 81% complementary to IR10 (97063..97176)" FT repeat_region 16675902..16676039 FT /rpt_family="ALU" FT /note="91% identity: matches 267..404 of consensus" FT repeat_region complement(16675909..16676055) FT /rpt_family="L1" FT /note="87% identity: matches 657..806 of consensus" FT repeat_region 16676061..16676077 FT /note="TCAA repeat" FT exon complement(16677221..16677240) FT /note="XPOUND prediction, score = 0.244" FT repeat_region 16677277..16677577 FT /rpt_type=INVERTED FT /note="IR11, 84% complementary to IR11' (100034..100319)" FT repeat_region 16677289..16677573 FT /rpt_family="ALU" FT /note="84% identity: matches 1..288 of consensus" FT repeat_region complement(16677310..16677421) FT /rpt_family="L1" FT /note="83% identity: matches 464..575 of consensus" FT repeat_region complement(16677381..16677563) FT /rpt_family="L1" FT /note="83% identity: matches 168..350 of consensus" FT repeat_region 16677570..16677605 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 94.4%, counts = 18" FT repeat_region 16677577..16677605 FT /note="AC repeat" FT exon 16678094..16678153 FT /note="GENSCAN prediction, score = 9.70" FT /note="GRAIL, score = 77%, comment = excellent shadow" FT repeat_region 16678251..16678295 FT /rpt_family="ttttttttttttttg repeat" FT /rpt_type=TANDEM FT /note="homology = 91.1%, counts = 3" FT repeat_region 16678288..16678573 FT /rpt_type=INVERTED FT /note="IR11', 84% complementary to IR11 (99023..99323)" FT repeat_region complement(16678295..16678561) FT /rpt_family="ALU" FT /note="81% identity: matches 1..282 of consensus" FT repeat_region 16678301..16678369 FT /rpt_family="L1" FT /note="89% identity: matches 167..235 of consensus" FT exon complement(16678468..16678506) FT /note="XPOUND prediction, score = 0.490" FT repeat_region 16678516..16678561 FT /rpt_family="L1" FT /note="97% identity: matches 480..526 of consensus" FT exon complement(16678765..16678866) FT /note="GRAIL, score = 56%, comment = good" FT exon 16679560..16679632 FT /note="XPOUND prediction, score = 0.215" FT exon complement(16679607..16679627) FT /note="XPOUND prediction, score = 0.210" FT exon complement(16679839..16679906) FT /note="GRAIL, score = 50%, comment = good" FT exon 16680052..16680155 FT /note="MZEF prediction, score = 0.808" FT repeat_region 16680214..16680233 FT /note="TTG repeat" FT exon 16681400..16681422 FT /note="XPOUND prediction, score = 0.219" FT repeat_region 16681575..16681606 FT /rpt_family="caca repeat" FT /rpt_type=TANDEM FT /note="homology = 87.5%, counts = 8" FT repeat_region 16681589..16681599 FT /note="CA repeat" FT exon 16682344..16682419 FT /note="GRAIL, score = 40%, comment = marginal shadow" FT exon complement(16682377..16682426) FT /note="XPOUND prediction, score = 0.240" FT repeat_region 16682383..16682394 FT /note="AGC repeat" FT exon complement(16684358..16684436) FT /note="GRAIL, score = 69%, comment = good" FT exon 16684380..16684451 FT /note="GENSCAN prediction, score = 2.78" FT exon complement(16684397..16684436) FT /note="XPOUND prediction, score = 0.345" FT exon complement(16685119..16685212) FT /note="MZEF prediction, score = 0.895" FT exon complement(16685126..16685192) FT /note="XPOUND prediction, score = 0.812" FT exon 16685352..16685630 FT /note="GENSCAN prediction, score = 3.76" FT exon complement(16687008..16687065) FT /note="MZEF prediction, score = 0.659" FT exon complement(16687724..16687794) FT /note="MZEF prediction, score = 0.870" FT repeat_region 16688984..16688994 FT /note="CT repeat" FT repeat_region 16689106..16689141 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 88.9%, counts = 18" FT repeat_region 16689117..16689141 FT /note="CA repeat" FT exon complement(16689248..16689273) FT /note="XPOUND prediction, score = 0.287" FT exon complement(16689359..16689425) FT /note="MZEF prediction, score = 0.538" FT exon complement(16689360..16689406) FT /note="XPOUND prediction, score = 0.417" FT exon 16689448..16689635 FT /note="MZEF prediction, score = 0.731" FT repeat_region 16690322..16690355 FT /rpt_family="ALU" FT /note="97% identity: matches 129..162 of consensus" FT repeat_region 16690361..16690446 FT /rpt_type=INVERTED FT /note="IR12, 75% complementary to IR12' (113581..113666)" FT repeat_region 16690410..16690440 FT /rpt_family="ALU" FT /note="100% identity: matches 230..260 of consensus" FT repeat_region 16690457..16690484 FT /rpt_family="atac repeat" FT /rpt_type=TANDEM FT /note="homology = 96.4%, counts = 7" FT repeat_region 16690461..16690484 FT /note="ATAC repeat" FT repeat_region 16690538..16690550 FT /note="AAAT repeat" FT exon complement(16690623..16690678) FT /note="XPOUND prediction, score = 0.435" FT exon complement(16690922..16690949) FT /note="XPOUND prediction, score = 0.298" FT exon 16690939..16691089 FT /note="MZEF prediction, score = 0.601" FT exon 16691368..16691492 FT /note="GRAIL, score = 78%, comment = excellent" FT exon complement(16691478..16691493) FT /note="XPOUND prediction, score = 0.233" FT repeat_region complement(16691532..16691786) FT /rpt_family="ALU" FT /note="89% identity: matches 19..273 of consensus" FT repeat_region 16691532..16691795 FT /rpt_family="L1" FT /note="84% identity: matches 251..515 of consensus" FT repeat_region complement(16691769..16691806) FT /rpt_family="L1" FT /note="97% identity: matches 364..401 of consensus" FT repeat_region 16691828..16692094 FT /rpt_family="L1" FT /note="86% identity: matches 162..424 of consensus" FT repeat_region 16691835..16691920 FT /rpt_type=INVERTED FT /note="IR12', 75% complementary to IR12 (112107..112192)" FT repeat_region complement(16691841..16692097) FT /rpt_family="ALU" FT /note="91% identity: matches 11..265 of consensus" FT repeat_region 16691921..16692107 FT /rpt_type=INVERTED FT /note="IR13, 85% complementary to IR13' (114593..114779)" FT exon complement(16692416..16692434) FT /note="XPOUND prediction, score = 0.218" FT exon complement(16692591..16692633) FT /note="XPOUND prediction, score = 0.231" FT repeat_region 16692847..16693033 FT /rpt_type=INVERTED FT /note="IR13', 85% complementary to IR13 (113667..113853)" FT repeat_region 16692857..16693105 FT /rpt_family="ALU" FT /note="90% identity: matches 468..715 of consensus" FT repeat_region complement(16692860..16693106) FT /rpt_family="L1" FT /note="85% identity: matches 182..424 of consensus" FT exon 16695214..16695261 FT /note="MZEF prediction, score = 0.989" FT repeat_region 16695516..16695555 FT /rpt_family="tttttttctt repeat" FT /rpt_type=TANDEM FT /note="homology = 87.5%, counts = 4" FT repeat_region complement(16695562..16695660) FT /rpt_family="ALU" FT /note="85% identity: matches 349..447 of consensus" FT repeat_region 16695576..16695661 FT /rpt_type=INVERTED FT /note="IR14, 86% complementary to IR14' (118834..118917)" FT repeat_region 16695580..16695661 FT /rpt_family="L1" FT /note="86% identity: matches 504..585 of consensus" FT exon complement(16696273..16696312) FT /note="XPOUND prediction, score = 0.289" FT repeat_region 16697086..16697279 FT /rpt_family="ALU" FT /note="89% identity: matches 157..351 of consensus" FT repeat_region 16697088..16697171 FT /rpt_type=INVERTED FT /note="IR14', 86% complementary to IR14 (117322..117407)" FT repeat_region complement(16697091..16697279) FT /rpt_family="L1" FT /note="87% identity: matches 237..424 of consensus" FT repeat_region 16697284..16697346 FT /rpt_family="ALU" FT /note="90% identity: matches 220..282 of consensus" FT repeat_region complement(16697284..16697346) FT /rpt_family="L1" FT /note="87% identity: matches 157..219 of consensus" FT repeat_region 16697360..16697377 FT /note="AATT repeat" FT repeat_region 16697435..16697561 FT /rpt_family="ALU" FT /note="87% identity: matches 463..589 of consensus" FT repeat_region complement(16697452..16697489) FT /rpt_family="L1" FT /note="94% identity: matches 387..424 of consensus" FT repeat_region complement(16697503..16697561) FT /rpt_family="L1" FT /note="93% identity: matches 473..531 of consensus" FT repeat_region 16697584..16697703 FT /rpt_family="ALU" FT /note="86% identity: matches 890..1009 of consensus" FT exon complement(16698166..16698258) FT /note="MZEF prediction, score = 0.815" FT repeat_region 16698415..16698692 FT /rpt_family="ALU" FT /note="85% identity: matches 399..672 of consensus" FT repeat_region complement(16698421..16698692) FT /rpt_family="L1" FT /note="82% identity: matches 161..424 of consensus" FT repeat_region 16698581..16698614 FT /rpt_type=INVERTED FT /note="IR15, 85% complementary to IR15' (122284..122317)" FT repeat_region 16699112..16699153 FT /rpt_family="tgtttt repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 7" FT repeat_region 16700427..16700476 FT /rpt_family="ALU" FT /note="90% identity: matches 987..1036 of consensus" FT repeat_region 16700538..16700571 FT /rpt_type=INVERTED FT /note="IR15', 85% complementary to IR15 (120327..120360)" FT repeat_region 16700538..16700599 FT /rpt_type=INVERTED FT /note="IR16, 75% complementary to IR16' (122573..122634)" FT repeat_region complement(16700684..16700789) FT /rpt_family="L1" FT /note="83% identity: matches 483..588 of consensus" FT repeat_region 16700685..16700789 FT /rpt_family="ALU" FT /note="87% identity: matches 466..570 of consensus" FT repeat_region 16700827..16700888 FT /rpt_type=INVERTED FT /note="IR16', 75% complementary to IR16 (122284..122345)" FT repeat_region 16700930..16700954 FT /note="AATA repeat" FT repeat_region 16701663..16701934 FT /rpt_family="ALU" FT /note="88% identity: matches 5..274 of consensus" FT repeat_region complement(16701672..16701933) FT /rpt_family="L1" FT /note="84% identity: matches 167..424 of consensus" FT exon complement(16704385..16704550) FT /note="GRAIL, score = 74%, comment = good" FT exon complement(16704586..16704648) FT /note="MZEF prediction, score = 0.877" FT repeat_region 16705132..16705173 FT /rpt_family="cacccc repeat" FT /rpt_type=TANDEM FT /note="homology = 81.0%, counts = 7" FT exon 16706913..16707017 FT /note="MZEF prediction, score = 0.704" FT repeat_region 16706919..16707194 FT /rpt_type=INVERTED FT /note="IR17, 81% complementary to IR17' (129409..129685)" FT repeat_region 16706923..16707195 FT /rpt_family="ALU" FT /note="95% identity: matches 5..278 of consensus" FT repeat_region complement(16706924..16707195) FT /rpt_family="L1" FT /note="90% identity: matches 249..521 of consensus" FT misc_feature 16706926..16707157 FT /note="CpG_island (%GC=58.6, o/e=0.95, #CpGs=18)" FT repeat_region 16707642..16707654 FT /note="TAT repeat" FT repeat_region complement(16707644..16707929) FT /rpt_family="ALU" FT /note="84% identity: matches 455..737 of consensus" FT repeat_region 16707653..16707925 FT /rpt_family="L1" FT /note="83% identity: matches 156..424 of consensus" FT repeat_region 16707663..16707939 FT /rpt_type=INVERTED FT /note="IR17', 81% complementary to IR17 (128665..128940)" FT exon 16708027..16708185 FT /note="GENSCAN prediction, score = 6.77" FT /note="GRAIL, score = 52%, comment = good" FT exon 16708534..16708645 FT /note="GRAIL, score = 95%, comment = excellent" FT exon complement(16708999..16709183) FT /note="GRAIL, score = 62%, comment = good shadow" FT exon complement(16710911..16710951) FT /note="XPOUND prediction, score = 0.252" FT exon complement(16711077..16711135) FT /note="XPOUND prediction, score = 0.373" FT repeat_region 16711090..16711101 FT /note="TCC repeat" FT exon 16711113..16711185 FT /note="GRAIL, score = 71%, comment = good" FT exon 16711113..16711196 FT /note="GENSCAN prediction, score = 1.77" FT exon complement(16713036..16713057) FT /note="XPOUND prediction, score = 0.207" FT exon 16713308..16713368 FT /note="MZEF prediction, score = 0.694" FT exon complement(16713782..16713905) FT /note="MZEF prediction, score = 0.691" FT repeat_region 16713806..16713922 FT /rpt_family="ALU" FT /note="85% identity: matches 472..588 of consensus" FT repeat_region complement(16713818..16713923) FT /rpt_family="L1" FT /note="87% identity: matches 464..569 of consensus" FT exon 16713889..16713975 FT /note="GRAIL, score = 51%, comment = good" FT exon complement(16714709..16714847) FT /note="MZEF prediction, score = 0.642" FT STS 16715288..16715584 FT /standard_name="SHGC-83634 (D11S4975), Map: 9, Homo FT sapiens" FT /note="GenBank Accession Number: G49783" FT repeat_region 16715766..16715782 FT /rpt_type=INVERTED FT /note="IR18, 100% complementary to IR18' (139140..139156)" FT repeat_region 16717394..16717410 FT /rpt_type=INVERTED FT /note="IR18', 100% complementary to IR18 (137512..137528)" FT exon 16717474..16717614 FT /note="GRAIL, score = 76%, comment = excellent" FT exon 16717826..16717884 FT /note="MZEF prediction, score = 0.890" FT exon complement(16718242..16718328) FT /note="MZEF prediction, score = 0.703" FT exon complement(16718659..16718675) FT /note="XPOUND prediction, score = 0.231" FT exon complement(16719452..16719497) FT /note="XPOUND prediction, score = 0.395" FT exon 16722492..16722608 FT /note="MZEF prediction, score = 0.541" FT repeat_region 16723448..16723460 FT /note="TA repeat" FT exon complement(16725101..16725131) FT /note="XPOUND prediction, score = 0.274" FT repeat_region 16725205..16725216 FT /note="TC repeat" FT repeat_region 16725216..16725247 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 16" FT repeat_region 16725217..16725248 FT /note="AC repeat" FT exon 16725951..16726046 FT /note="MZEF prediction, score = 0.830" FT repeat_region 16725984..16726015 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 96.9%, counts = 16" FT repeat_region 16725984..16726015 FT /note="AC repeat" FT exon complement(16726107..16726171) FT /note="XPOUND prediction, score = 0.371" FT misc_feature 16726860..16727273 FT /note="CpG_island (%GC=71.5, o/e=0.84, #CpGs=53)" FT exon complement(16726922..16726970) FT /note="XPOUND prediction, score = 0.437" FT exon complement(16726984..16727076) FT /note="XPOUND prediction, score = 0.785" FT exon 16726994..16727104 FT /note="GRAIL, score = 48%, comment = marginal" FT repeat_region 16727097..16727148 FT /rpt_family="gcgg repeat" FT /rpt_type=TANDEM FT /note="homology = 76.9%, counts = 13" FT exon complement(16727112..16727314) FT /note="XPOUND prediction, score = 0.622" FT repeat_region 16727124..16727137 FT /note="GGCG repeat" FT exon 16727164..16727343 FT /note="GRAIL, score = 41%, comment = marginal" FT repeat_region 16727200..16727213 FT /note="GGAGC repeat" FT exon complement(16727795..16727879) FT /note="XPOUND prediction, score = 0.320" FT exon complement(16727795..16727995) FT /note="GRAIL, score = 55%, comment = good shadow" FT /note="MZEF prediction, score = 0.913" FT exon complement(16727795..16728073) FT /note="GENSCAN prediction, score = 9.35" FT repeat_region 16727925..16727972 FT /rpt_family="tc repeat" FT /rpt_type=TANDEM FT /note="homology = 79.2%, counts = 24" FT exon complement(16728391..16728424) FT /note="XPOUND prediction, score = 0.251" FT repeat_region 16729975..16730036 FT /rpt_family="ct repeat" FT /rpt_type=TANDEM FT /note="homology = 72.6%, counts = 31" FT exon 16730085..16730238 FT /note="GRAIL, score = 58%, comment = good" FT repeat_region 16730103..16730113 FT /note="CA repeat" FT exon complement(16730205..16730232) FT /note="XPOUND prediction, score = 0.244" FT repeat_region 16731443..16731457 FT /note="CCACA repeat" FT exon 16733479..16733657 FT /note="MZEF prediction, score = 0.522" FT exon complement(16733692..16733726) FT /note="XPOUND prediction, score = 0.840" FT repeat_region 16733732..16733895 FT /rpt_type=INVERTED FT /note="IR19, 78% complementary to IR19' (157246..157408)" FT repeat_region 16733759..16733881 FT /rpt_family="ALU" FT /note="91% identity: matches 159..281 of consensus" FT repeat_region complement(16733765..16733810) FT /rpt_family="L1" FT /note="93% identity: matches 383..428 of consensus" FT repeat_region complement(16733791..16733860) FT /rpt_family="L1" FT /note="88% identity: matches 182..251 of consensus" FT exon complement(16734504..16734518) FT /note="XPOUND prediction, score = 0.229" FT exon 16734513..16734603 FT /note="GRAIL, score = 68%, comment = good" FT exon 16735419..16735477 FT /note="MZEF prediction, score = 0.990" FT repeat_region 16735500..16735662 FT /rpt_type=INVERTED FT /note="IR19', 78% complementary to IR19 (155478..155641)" FT repeat_region complement(16735522..16735696) FT /rpt_family="ALU" FT /note="86% identity: matches 100..273 of consensus" FT repeat_region 16735538..16735694 FT /rpt_family="L1" FT /note="83% identity: matches 270..427 of consensus" FT repeat_region 16735708..16735791 FT /rpt_type=INVERTED FT /note="IR20, 90% complementary to IR20' (157706..157790)" FT repeat_region complement(16735708..16735798) FT /rpt_family="ALU" FT /note="88% identity: matches 629..720 of consensus" FT repeat_region 16735708..16735801 FT /rpt_family="THR" FT /note="88% identity: matches 6..100 of consensus" FT repeat_region 16735949..16736200 FT /rpt_family="L1" FT /note="88% identity: matches 96..345 of consensus" FT repeat_region 16735949..16736207 FT /rpt_type=INVERTED FT /note="IR21, 82% complementary to IR21' (158262..158518)" FT repeat_region 16735960..16736044 FT /rpt_type=INVERTED FT /note="IR20', 90% complementary to IR20 (157454..157537)" FT repeat_region complement(16735964..16736200) FT /rpt_family="L1" FT /note="85% identity: matches 192..424 of consensus" FT repeat_region 16736227..16736245 FT /note="GAAA repeat" FT repeat_region 16736437..16736484 FT /rpt_family="gattatttattattat repeat" FT /rpt_type=TANDEM FT /note="homology = 87.5%, counts = 3" FT repeat_region 16736492..16736597 FT /rpt_family="L1" FT /note="85% identity: matches 245..350 of consensus" FT repeat_region complement(16736492..16736633) FT /rpt_family="ALU" FT /note="89% identity: matches 139..279 of consensus" FT repeat_region 16736516..16736772 FT /rpt_type=INVERTED FT /note="IR21', 82% complementary to IR21 (157695..157953)" FT repeat_region 16736654..16736750 FT /rpt_family="L1" FT /note="87% identity: matches 323..417 of consensus" FT repeat_region complement(16736654..16736767) FT /rpt_family="ALU" FT /note="88% identity: matches 439..552 of consensus" FT repeat_region complement(16736836..16737094) FT /rpt_family="ALU" FT /note="88% identity: matches 529..787 of consensus" FT repeat_region 16736847..16737089 FT /rpt_family="L1" FT /note="82% identity: matches 185..424 of consensus" FT repeat_region complement(16737143..16737223) FT /rpt_family="ALU" FT /note="86% identity: matches 966..1047 of consensus" FT repeat_region complement(16737274..16737537) FT /rpt_family="ALU" FT /note="93% identity: matches 313..576 of consensus" FT repeat_region 16737274..16737546 FT /rpt_family="L1" FT /note="90% identity: matches 252..525 of consensus" FT exon complement(16738358..16738483) FT /note="MZEF prediction, score = 0.639" FT STS 16738846..16738962 FT /standard_name="SHGC-86015 (D11S4975), Map: 9, Homo FT sapiens" FT /note="GenBank Accession Number: G61615" FT misc_feature 16738992..16794841 FT /note="annotated region of clone" FT polyA_signal complement(16775261..16775266) FT CDS complement(16775576..16775855) FT /pseudo FT /locus_tag="RP11-335H2.2-001" FT /product="LSM1 homolog, U6 small nuclear RNA associated (S. FT cerevisiae) pseudogene" FT /note="match: proteins: Sw:O15116 Sw:Q8VC85" FT misc_feature 16790842 FT /note="Clone_left_end: RP11-519C17" FT misc_feature 16794842..16954358 FT /note="annotated region of clone" FT misc_feature 16797493..16797640 FT /note="Sequence from overlapping clone RP11-335H2 FT (AL162418). Assembly confirmed by restriction digest" FT misc_feature 16803079..16803155 FT /note="Sequence from overlapping clone RP11-335H2 FT (AL162418). Assembly confirmed by restriction digest" FT misc_feature 16807561 FT /note="Clone_right_end: RP11-335H2" FT misc_feature 16830336 FT /note="Clone_left_end: RP11-325K2" FT mRNA join(complement(16870644..16870841), FT complement(AL450003.2:149541..149741), FT AL449983.2:13848..13950,AL449983.2:44168..44353) FT /gene="BNC2" FT /locus_tag="RP11-183I6.1-007" FT /product="basonuclin 2" FT /note="match: ESTs: Em:CN430269.1" FT CDS join(complement(16870644..16870646), FT complement(AL450003.2:160104..160229), FT complement(AL450003.2:149541..149741), FT AL449983.2:13848..13950,AL449983.2:44168..44403, FT AL449983.2:159409..161378,AL449983.2:177284..177944) FT /gene="BNC2" FT /locus_tag="RP11-183I6.1-008" FT /standard_name="OTTHUMP00000125286" FT /product="basonuclin 2" FT /protein_id="CAM21221.1" FT /translation="MAHLGPTPPPHSLNYKSEDRLSEQDWPAYFKVPCCGVDTSQIESE FT EAEVDVRERETQRDREPKRARDLTLRDSCTDNSMQFGTRTTTAEPGFMGTWQNADTNLL FT FRMSQQAIRCTLVNCTCECFQPGKINLRTCDQCKHGWVAHALDKLSTQHLYHPTQVEIV FT QSNVVFDISSLMLYGTQAVPVRLKILLDRLFSVLKQEEVLHILHGLGWTLRDYVRGYIL FT QDAAGKVLDRWAIMSREEEIITLQQFLRFGETKSIVELMAIQEKEGQAVAVPSSKTDSD FT IRTFIESNNRTRSPSLLAHLENSNPSSIHHFENIPNSLAFLLPFQYINPVSAPLLGLPP FT NGLLLEQPGLRLREPSLSTQNEYNESSESEVSPTPYKNDQTPNRNALTSITNVEPKTEP FT ACVSPIQNSAPVSDLTKTEHPKSSFRIHRMRRMGSASRKGRVFCNACGKTFYDKGTLKI FT HYNAVHLKIKHRCTIEGCNMVFSSLRSRNRHSANPNPRLHMPMLRNNRDKDLIRATSGA FT ATPVIASTKSNLALTSPGRPPMGFTTPPLDPVLQNPLPSQLVFSGLKTVQPVPPFYRSL FT LTPGEMVSPPTSLPTSPIIPTSGTIEQHPPPPSEPVVPAVMMATHEPSADLAPKKKPRK FT SSMPVKIEKEIIDTADEFDDEDDDPNDGGAVVNDMSHDNHCHSQEEMSPGMSVKDFSKH FT NRTRCISRTEIRRADSMTSEDQEPERDYENESESSEPKLGEESMEGDEHIHSEVSEKVL FT MNSERPDENHSEPSHQDVIKVKEEFTDPTYDMFYMSQYGLYNGGGASMAALHESFTSSL FT NYGSPQKFSPEGDLCSSPDPKICYVCKKSFKSSYSVKLHYRNVHLKEMHVCTVAGCNAA FT FPSRRSRDRHSANINLHRKLLTKELDDMGLDSSQPSLSKDLRDEFLVKIYGAQHPMGLD FT VREDASSPAGTEDSHLNGYGRGMAEDYMVLDLSTTSSLQSSSSIHSSRESDAGSDEGIL FT LDDIDGASDSGESAHKAEAPALPGSLGAEVSGSLMFSSLSGSNGGIMCNICHKMYSNKG FT TLRVHYKTVHLREMHKCKVPGCNMMFSSVRSRNRHSQNPNLHKNIPFTSVD" FT CDS join(complement(16870644..16870646), FT complement(AL450003.2:160104..160229), FT AL449983.2:13848..13950,AL449983.2:44168..44403, FT AL449983.2:159409..161378,AL449983.2:177284..177944) FT /gene="BNC2" FT /locus_tag="RP11-183I6.1-010" FT /standard_name="OTTHUMP00000126958" FT /product="basonuclin 2" FT /protein_id="CAM21222.1" FT /translation="MAHLGPTPPPHSLNYKSEDRLSEQDWPAYFKVPCCGVDTSQIEAI FT RCTLVNCTCECFQPGKINLRTCDQCKHGWVAHALDKLSTQHLYHPTQVEIVQSNVVFDI FT SSLMLYGTQAVPVRLKILLDRLFSVLKQEEVLHILHGLGWTLRDYVRGYILQDAAGKVL FT DRWAIMSREEEIITLQQFLRFGETKSIVELMAIQEKEGQAVAVPSSKTDSDIRTFIESN FT NRTRSPSLLAHLENSNPSSIHHFENIPNSLAFLLPFQYINPVSAPLLGLPPNGLLLEQP FT GLRLREPSLSTQNEYNESSESEVSPTPYKNDQTPNRNALTSITNVEPKTEPACVSPIQN FT SAPVSDLTKTEHPKSSFRIHRMRRMGSASRKGRVFCNACGKTFYDKGTLKIHYNAVHLK FT IKHRCTIEGCNMVFSSLRSRNRHSANPNPRLHMPMLRNNRDKDLIRATSGAATPVIAST FT KSNLALTSPGRPPMGFTTPPLDPVLQNPLPSQLVFSGLKTVQPVPPFYRSLLTPGEMVS FT PPTSLPTSPIIPTSGTIEQHPPPPSEPVVPAVMMATHEPSADLAPKKKPRKSSMPVKIE FT KEIIDTADEFDDEDDDPNDGGAVVNDMSHDNHCHSQEEMSPGMSVKDFSKHNRTRCISR FT TEIRRADSMTSEDQEPERDYENESESSEPKLGEESMEGDEHIHSEVSEKVLMNSERPDE FT NHSEPSHQDVIKVKEEFTDPTYDMFYMSQYGLYNGGGASMAALHESFTSSLNYGSPQKF FT SPEGDLCSSPDPKICYVCKKSFKSSYSVKLHYRNVHLKEMHVCTVAGCNAAFPSRRSRD FT RHSANINLHRKLLTKELDDMGLDSSQPSLSKDLRDEFLVKIYGAQHPMGLDVREDASSP FT AGTEDSHLNGYGRGMAEDYMVLDLSTTSSLQSSSSIHSSRESDAGSDEGILLDDIDGAS FT DSGESAHKAEAPALPGSLGAEVSGSLMFSSLSGSNGGIMCNICHKMYSNKGTLRVHYKT FT VHLREMHKCKVPGCNMMFSSVRSRNRHSQNPNLHKNIPFTSVD" FT mRNA join(complement(16870644..16870758), FT complement(AL450003.2:160104..160229), FT AL449983.2:13848..13950,AL449983.2:44168..44403, FT AL449983.2:159409..161378,AL449983.2:177284..178126) FT /gene="BNC2" FT /locus_tag="RP11-183I6.1-010" FT /product="basonuclin 2" FT /note="match: cDNAs: Em:AK030323.1" FT mRNA join(complement(16870644..16870758), FT complement(AL450003.2:160104..160229), FT complement(AL450003.2:149541..149741), FT AL449983.2:13848..13950,AL449983.2:44168..44403, FT AL449983.2:159409..161378,AL449983.2:166934..167633, FT AL449983.2:175638..175671,AL449983.2:177284..178639) FT /gene="BNC2" FT /locus_tag="RP11-183I6.1-001" FT /product="basonuclin 2" FT /note="match: cDNAs: Em:AK092247.1" FT /note="match: ESTs: Em:AI971986.1 Em:BB659809.1 FT Em:BF434347.1 Em:BF721848.1 Em:BI037693.1 Em:BI039619.1" FT mRNA join(complement(16870644..16870704), FT complement(AL450003.2:160104..160229), FT complement(AL450003.2:149541..149741), FT AL449983.2:13848..13950,AL449983.2:44168..44403, FT AL449983.2:159409..161378,AL449983.2:177284..180527) FT /gene="BNC2" FT /locus_tag="RP11-183I6.1-008" FT /product="basonuclin 2" FT /note="match: cDNAs: Em:AK131398.1 Em:AY438376.1 FT Em:BX641030.1 Em:CL315400.1" FT /note="match: ESTs: Em:AA843242.1 Em:AI097383.1 FT Em:AI971986.1 Em:AW150759.1 Em:AW188023.1 Em:AW300432.1 FT Em:BG214531.1 Em:BP219997.1 Em:BP376609.1 Em:BX509588.1 FT Em:W70259.1" FT misc_feature 16905852 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 170bp by restriction digest data" FT misc_feature 16952369 FT /note="Clone_right_end: RP11-519C17" FT misc_feature 16975542 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 50bp by restriction digest data" FT misc_feature 16994996 FT /note="Clone_left_end: RP11-132E11" FT misc_feature 17005145 FT /note="Clone_right_end: RP11-325K2" FT misc_feature 17007146..17148368 FT /note="annotated region of clone" FT mRNA join(17048917..17049039,17112271..17112813) FT /locus_tag="RP11-132E11.2-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BG432982.1" FT CDS complement(17096299..17096444) FT /pseudo FT /locus_tag="RP11-132E11.3-001" FT /product="ribosomal protein S29 (RPS29) pseudogene" FT /note="match: proteins: Sw:P62273 Sw:P62275 Sw:Q90YP2" FT CDS complement(17108302..17108602) FT /pseudo FT /locus_tag="RP11-132E11.4-001" FT /product="ribosomal protein L31 (RPL31) pseudogene" FT /note="match: proteins: Sw:P62899 Sw:P62902 Sw:Q90YT7 FT Sw:Q9GN74 Sw:Q9GP16 Sw:Q9IA76 Sw:Q9V597 Sw:Q9XGL4 Tr:Q76N53 FT Tr:Q9CY93" FT mRNA join(17134980..17135423,17143286..17143374, FT AL354711.24:79833..79917,AL354711.24:89288..89422, FT AL354711.24:90039..90218,AL354711.24:127363..127496, FT AL354711.24:151820..151982,AL354738.13:2562..2756, FT AL354738.13:24136..24312,AL354738.13:26109..26234, FT AL354738.13:34331..34452,AL354738.13:35829..35948, FT AL354738.13:60121..60221,AL590377.4:18685..18776, FT AL590377.4:25057..25592,AL590377.4:39816..39996, FT AL590377.4:46311..46404,AL590377.4:46489..46712, FT AL590377.4:88047..88238,AL590377.4:93439..93536, FT AL590377.4:95020..95146,AL590377.4:96504..96641, FT AL590377.4:97229..97414,AL590377.4:114818..115003, FT AL590377.4:117512..117589,AL133214.12:5464..6836) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-001" FT /product="centlein, centrosomal protein" FT /note="match: cDNAs: Em:AK000283.1 Em:BX647069.1" FT /note="match: ESTs: Em:BE971444.1 Em:BG215641.1" FT mRNA join(17134980..17135423,17143286..17143374, FT AL354711.24:20448..22186) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-003" FT /product="centlein, centrosomal protein" FT /note="match: cDNAs: Em:CR623494.1" FT /note="match: ESTs: Em:AL516906.1" FT mRNA join(17135038..17135423,17143286..17143374, FT AL354711.24:79833..79917,AL354711.24:89288..89422, FT AL354711.24:90039..90218,AL354711.24:127363..127496, FT AL354711.24:151820..152871) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-004" FT /product="centlein, centrosomal protein" FT /note="match: cDNAs: Em:AK098502.1" FT /note="match: ESTs: Em:AL529303.1 Em:AV646875.1 FT Em:AV647564.1 Em:BG209351.1 Em:BM932723.1" FT CDS join(17135064..17135423,17143286..17143374, FT AL354711.24:79833..79917,AL354711.24:89288..89422, FT AL354711.24:90039..90218,AL354711.24:127363..127496, FT AL354711.24:151820..151982,AL354738.13:2562..2756, FT AL354738.13:24136..24312,AL354738.13:26109..26234, FT AL354738.13:34331..34452,AL354738.13:35829..35948, FT AL354738.13:60121..60221,AL590377.4:18685..18776, FT AL590377.4:25057..25592,AL590377.4:39816..39996, FT AL590377.4:46311..46404,AL590377.4:46489..46712, FT AL590377.4:88047..88238,AL590377.4:93439..93536, FT AL590377.4:95020..95146,AL590377.4:96504..96641, FT AL590377.4:97229..97414,AL590377.4:114818..115003, FT AL590377.4:117512..117589,AL133214.12:5464..5565) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-001" FT /standard_name="OTTHUMP00000021083" FT /product="centlein, centrosomal protein" FT /note="match: proteins: Sw:Q9NXG0 Tr:Q8N1G9" FT /protein_id="CAH70424.1" FT /translation="MAARSPPSPHPSPPARQLGPRSPRVGRGAEVHAMRSEASGFAGAA FT REVVADESDKIWVGEEGSGGRRGPGGAAPAHAPLLSAPMGSRRLEGISVEEAMVTRTQL FT LEEELSSLKEELALCQADKEFVWSLWKRLQVTNPDLTQVVSLVVEREKQKSEAKDRKVL FT EILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEI FT KDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAK FT IKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQ FT NSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEA FT MLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLE FT TLMVSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRSLS FT PKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAV FT KEQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEE FT LDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKV FT TELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDV FT EKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATM FT KVRSGRYDCKTTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWEDVSES FT SSDSEAQTSQTLGTIIVETSQKISPTEDGKDQKESDPTEDSQTQGKEIVQTYLNIDGKT FT PKDYFHDKNAKKPTFQKKNCKMQKSSHTAVPTRVNREKYKNITAQKSSSNIILLRERII FT SLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLR FT KEKEDLLKKLESSSEITSLAEENSQVTFPRIQVTSLSPSRSMDLEMKQLQYKLKNATNE FT LTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNLESNKS FT FSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDL FT KLTLLVSRISETESAMAEIETAASKQLQELALQSEQVLEGAQKTLLLANEKVEEFTTFV FT KALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDT FT EDQVEIEKTKIDAENDKEWMLYIQKLLEGQLPFASYLLEAVLEKINEKKKLVEGYFTIM FT KDIR" FT CDS join(17135064..17135423,17143286..17143374, FT AL354711.24:20448..20610) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-003" FT /standard_name="OTTHUMP00000139102" FT /product="centlein, centrosomal protein" FT /protein_id="CAM13085.1" FT /translation="MAARSPPSPHPSPPARQLGPRSPRVGRGAEVHAMRSEASGFAGAA FT REVVADESDKIWVGEEGSGGRRGPGGAAPAHAPLLSAPMGSRRLEGISVEEAMVTRTQL FT LEEELSSLKEELALCQADKEFVWSLWKRLQVTNPDLTQVVSLVVERRPPEDVYHQNEEY FT TKKDKKLGLRKCEIQHMNNIKIFQGEDERRLRRLGSSSSQ" FT CDS join(17135064..17135423,17143286..17143374, FT AL354711.24:79833..79917,AL354711.24:89288..89422, FT AL354711.24:90039..90218,AL354711.24:127363..127496, FT AL354711.24:151820..152012) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-004" FT /standard_name="OTTHUMP00000021082" FT /product="centlein, centrosomal protein" FT /note="match: proteins: Tr:Q8N1G9" FT /protein_id="CAH70425.1" FT /translation="MAARSPPSPHPSPPARQLGPRSPRVGRGAEVHAMRSEASGFAGAA FT REVVADESDKIWVGEEGSGGRRGPGGAAPAHAPLLSAPMGSRRLEGISVEEAMVTRTQL FT LEEELSSLKEELALCQADKEFVWSLWKRLQVTNPDLTQVVSLVVEREKQKSEAKDRKVL FT EILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEI FT KDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAK FT IKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQ FT NSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKVCFYSVIKM" FT misc_feature 17144369 FT /note="Clone_left_end: RP11-340N12" FT misc_feature 17148369..17308494 FT /note="annotated region of clone" FT misc_feature 17177122..17177175 FT /note="Sequence from overlapping clone RP11-8J5 (AL499603). FT Assembly confirmed by restriction digest" FT misc_feature 17181871..17182171 FT /note="Sequence from overlapping clone RP11-8J5 (AL499603). FT Assembly confirmed by restriction digest" FT misc_feature 17183126 FT /note="Clone_right_end: RP11-8J5" FT misc_feature 17269343 FT /note="Clone_left_end: RP11-628O6" FT mRNA join(AL162725.10:129835..130278,AL162725.10:138141..138229, FT 17226201..17226285,17235656..17235790,17236407..17236586, FT 17273731..17273864,17298188..17298350, FT AL354738.13:2562..2756,AL354738.13:24136..24312, FT AL354738.13:26109..26234,AL354738.13:34331..34452, FT AL354738.13:35829..35948,AL354738.13:60121..60221, FT AL590377.4:18685..18776,AL590377.4:25057..25592, FT AL590377.4:39816..39996,AL590377.4:46311..46404, FT AL590377.4:46489..46712,AL590377.4:88047..88238, FT AL590377.4:93439..93536,AL590377.4:95020..95146, FT AL590377.4:96504..96641,AL590377.4:97229..97414, FT AL590377.4:114818..115003,AL590377.4:117512..117589, FT AL133214.12:5464..6836) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-001" FT /product="centlein, centrosomal protein" FT /note="match: cDNAs: Em:AK000283.1 Em:BX647069.1" FT /note="match: ESTs: Em:BE971444.1 Em:BG215641.1" FT mRNA join(AL162725.10:129835..130278,AL162725.10:138141..138229, FT 17166816..17168554) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-003" FT /product="centlein, centrosomal protein" FT /note="match: cDNAs: Em:CR623494.1" FT /note="match: ESTs: Em:AL516906.1" FT mRNA join(AL162725.10:129893..130278,AL162725.10:138141..138229, FT 17226201..17226285,17235656..17235790,17236407..17236586, FT 17273731..17273864,17298188..17299239) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-004" FT /product="centlein, centrosomal protein" FT /note="match: cDNAs: Em:AK098502.1" FT /note="match: ESTs: Em:AL529303.1 Em:AV646875.1 FT Em:AV647564.1 Em:BG209351.1 Em:BM932723.1" FT CDS join(AL162725.10:129919..130278,AL162725.10:138141..138229, FT 17226201..17226285,17235656..17235790,17236407..17236586, FT 17273731..17273864,17298188..17298350, FT AL354738.13:2562..2756,AL354738.13:24136..24312, FT AL354738.13:26109..26234,AL354738.13:34331..34452, FT AL354738.13:35829..35948,AL354738.13:60121..60221, FT AL590377.4:18685..18776,AL590377.4:25057..25592, FT AL590377.4:39816..39996,AL590377.4:46311..46404, FT AL590377.4:46489..46712,AL590377.4:88047..88238, FT AL590377.4:93439..93536,AL590377.4:95020..95146, FT AL590377.4:96504..96641,AL590377.4:97229..97414, FT AL590377.4:114818..115003,AL590377.4:117512..117589, FT AL133214.12:5464..5565) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-001" FT /standard_name="OTTHUMP00000021083" FT /product="centlein, centrosomal protein" FT /note="match: proteins: Sw:Q9NXG0 Tr:Q8N1G9" FT /protein_id="CAH72682.2" FT /translation="MAARSPPSPHPSPPARQLGPRSPRVGRGAEVHAMRSEASGFAGAA FT REVVADESDKIWVGEEGSGGRRGPGGAAPAHAPLLSAPMGSRRLEGISVEEAMVTRTQL FT LEEELSSLKEELALCQADKEFVWSLWKRLQVTNPDLTQVVSLVVEREKQKSEAKDRKVL FT EILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEI FT KDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAK FT IKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQ FT NSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEA FT MLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLE FT TLMVSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRSLS FT PKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAV FT KEQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEE FT LDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKV FT TELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDV FT EKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATM FT KVRSGRYDCKTTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWEDVSES FT SSDSEAQTSQTLGTIIVETSQKISPTEDGKDQKESDPTEDSQTQGKEIVQTYLNIDGKT FT PKDYFHDKNAKKPTFQKKNCKMQKSSHTAVPTRVNREKYKNITAQKSSSNIILLRERII FT SLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLR FT KEKEDLLKKLESSSEITSLAEENSQVTFPRIQVTSLSPSRSMDLEMKQLQYKLKNATNE FT LTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNLESNKS FT FSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDL FT KLTLLVSRISETESAMAEIETAASKQLQELALQSEQVLEGAQKTLLLANEKVEEFTTFV FT KALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDT FT EDQVEIEKTKIDAENDKEWMLYIQKLLEGQLPFASYLLEAVLEKINEKKKLVEGYFTIM FT KDIR" FT CDS join(AL162725.10:129919..130278,AL162725.10:138141..138229, FT 17166816..17166978) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-003" FT /standard_name="OTTHUMP00000139102" FT /product="centlein, centrosomal protein" FT /protein_id="CAM17385.1" FT /translation="MAARSPPSPHPSPPARQLGPRSPRVGRGAEVHAMRSEASGFAGAA FT REVVADESDKIWVGEEGSGGRRGPGGAAPAHAPLLSAPMGSRRLEGISVEEAMVTRTQL FT LEEELSSLKEELALCQADKEFVWSLWKRLQVTNPDLTQVVSLVVERRPPEDVYHQNEEY FT TKKDKKLGLRKCEIQHMNNIKIFQGEDERRLRRLGSSSSQ" FT CDS join(AL162725.10:129919..130278,AL162725.10:138141..138229, FT 17226201..17226285,17235656..17235790,17236407..17236586, FT 17273731..17273864,17298188..17298380) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-004" FT /standard_name="OTTHUMP00000021082" FT /product="centlein, centrosomal protein" FT /note="match: proteins: Tr:Q8N1G9" FT /protein_id="CAH72684.1" FT /translation="MAARSPPSPHPSPPARQLGPRSPRVGRGAEVHAMRSEASGFAGAA FT REVVADESDKIWVGEEGSGGRRGPGGAAPAHAPLLSAPMGSRRLEGISVEEAMVTRTQL FT LEEELSSLKEELALCQADKEFVWSLWKRLQVTNPDLTQVVSLVVEREKQKSEAKDRKVL FT EILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEI FT KDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAK FT IKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQ FT NSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKVCFYSVIKM" FT misc_feature 17283033..17283150 FT /note="Sequence from overlapping clone FT RP11-628O6(AL354738). Assembly confirmed by restriction FT digest" FT misc_feature 17292845..17292924 FT /note="Single clone region. Sequence from reads from a FT short insert library derived from a single pUC clone. FT Restriction digest data confirm the assembly" FT polyA_signal 17299086..17299091 FT polyA_site 17299239 FT polyA_signal 17302021..17302026 FT polyA_site 17302049 FT misc_feature 17306494 FT /note="Clone_right_end: RP11-340N12" FT misc_feature 17308495..17371475 FT /note="annotated region of clone" FT misc_feature 17352429..17352482 FT /note="Single clone region. Assembly confimed by FT restriction digest data" FT misc_feature 17367476 FT /note="Clone_left_end: RP11-492A12" FT mRNA join(AL162725.10:129835..130278,AL162725.10:138141..138229, FT AL354711.24:79833..79917,AL354711.24:89288..89422, FT AL354711.24:90039..90218,AL354711.24:127363..127496, FT AL354711.24:151820..151982,17309056..17309250, FT 17330630..17330806,17332603..17332728,17340825..17340946, FT 17342323..17342442,17366615..17366715, FT AL590377.4:18685..18776,AL590377.4:25057..25592, FT AL590377.4:39816..39996,AL590377.4:46311..46404, FT AL590377.4:46489..46712,AL590377.4:88047..88238, FT AL590377.4:93439..93536,AL590377.4:95020..95146, FT AL590377.4:96504..96641,AL590377.4:97229..97414, FT AL590377.4:114818..115003,AL590377.4:117512..117589, FT AL133214.12:5464..6836) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-001" FT /product="centlein, centrosomal protein" FT /note="match: cDNAs: Em:AK000283.1 Em:BX647069.1" FT /note="match: ESTs: Em:BE971444.1 Em:BG215641.1" FT CDS join(AL162725.10:129919..130278,AL162725.10:138141..138229, FT AL354711.24:79833..79917,AL354711.24:89288..89422, FT AL354711.24:90039..90218,AL354711.24:127363..127496, FT AL354711.24:151820..151982,17309056..17309250, FT 17330630..17330806,17332603..17332728,17340825..17340946, FT 17342323..17342442,17366615..17366715, FT AL590377.4:18685..18776,AL590377.4:25057..25592, FT AL590377.4:39816..39996,AL590377.4:46311..46404, FT AL590377.4:46489..46712,AL590377.4:88047..88238, FT AL590377.4:93439..93536,AL590377.4:95020..95146, FT AL590377.4:96504..96641,AL590377.4:97229..97414, FT AL590377.4:114818..115003,AL590377.4:117512..117589, FT AL133214.12:5464..5565) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-001" FT /standard_name="OTTHUMP00000021083" FT /product="centlein, centrosomal protein" FT /note="match: proteins: Sw:Q9NXG0 Tr:Q8N1G9" FT /protein_id="CAI16195.2" FT /translation="MAARSPPSPHPSPPARQLGPRSPRVGRGAEVHAMRSEASGFAGAA FT REVVADESDKIWVGEEGSGGRRGPGGAAPAHAPLLSAPMGSRRLEGISVEEAMVTRTQL FT LEEELSSLKEELALCQADKEFVWSLWKRLQVTNPDLTQVVSLVVEREKQKSEAKDRKVL FT EILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEI FT KDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAK FT IKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQ FT NSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEA FT MLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLE FT TLMVSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRSLS FT PKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAV FT KEQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEE FT LDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKV FT TELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDV FT EKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATM FT KVRSGRYDCKTTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWEDVSES FT SSDSEAQTSQTLGTIIVETSQKISPTEDGKDQKESDPTEDSQTQGKEIVQTYLNIDGKT FT PKDYFHDKNAKKPTFQKKNCKMQKSSHTAVPTRVNREKYKNITAQKSSSNIILLRERII FT SLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLR FT KEKEDLLKKLESSSEITSLAEENSQVTFPRIQVTSLSPSRSMDLEMKQLQYKLKNATNE FT LTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNLESNKS FT FSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDL FT KLTLLVSRISETESAMAEIETAASKQLQELALQSEQVLEGAQKTLLLANEKVEEFTTFV FT KALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDT FT EDQVEIEKTKIDAENDKEWMLYIQKLLEGQLPFASYLLEAVLEKINEKKKLVEGYFTIM FT KDIR" FT misc_feature 17371476..17499085 FT /note="annotated region of clone" FT mRNA join(17415816..17415879,17415964..17416187, FT 17444195..17444244,17457522..17457626,17462914..17462982) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-002" FT /product="centlein, centrosomal protein" FT /note="match: ESTs: Em:AI872311.1" FT misc_feature 17445740 FT /note="Clone_right_end: RP11-628O6" FT CDS complement(17447143..17448541) FT /pseudo FT /locus_tag="RP11-492A12.2-001" FT /product="novel pseudogene" FT /note="match: proteins: Sw:Q9Y512" FT misc_feature 17495086 FT /note="Clone_left_end: RP11-163F8" FT mRNA join(AL162725.10:129835..130278,AL162725.10:138141..138229, FT AL354711.24:79833..79917,AL354711.24:89288..89422, FT AL354711.24:90039..90218,AL354711.24:127363..127496, FT AL354711.24:151820..151982,AL354738.13:2562..2756, FT AL354738.13:24136..24312,AL354738.13:26109..26234, FT AL354738.13:34331..34452,AL354738.13:35829..35948, FT AL354738.13:60121..60221,17388160..17388251, FT 17394532..17395067,17409291..17409471,17415786..17415879, FT 17415964..17416187,17457522..17457713,17462914..17463011, FT 17464495..17464621,17465979..17466116,17466704..17466889, FT 17484293..17484478,17486987..17487064, FT AL133214.12:5464..6836) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-001" FT /product="centlein, centrosomal protein" FT /note="match: cDNAs: Em:AK000283.1 Em:BX647069.1" FT /note="match: ESTs: Em:BE971444.1 Em:BG215641.1" FT CDS join(AL162725.10:129919..130278,AL162725.10:138141..138229, FT AL354711.24:79833..79917,AL354711.24:89288..89422, FT AL354711.24:90039..90218,AL354711.24:127363..127496, FT AL354711.24:151820..151982,AL354738.13:2562..2756, FT AL354738.13:24136..24312,AL354738.13:26109..26234, FT AL354738.13:34331..34452,AL354738.13:35829..35948, FT AL354738.13:60121..60221,17388160..17388251, FT 17394532..17395067,17409291..17409471,17415786..17415879, FT 17415964..17416187,17457522..17457713,17462914..17463011, FT 17464495..17464621,17465979..17466116,17466704..17466889, FT 17484293..17484478,17486987..17487064, FT AL133214.12:5464..5565) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-001" FT /standard_name="OTTHUMP00000021083" FT /product="centlein, centrosomal protein" FT /note="match: proteins: Sw:Q9NXG0 Tr:Q8N1G9" FT /protein_id="CAI14630.2" FT /translation="MAARSPPSPHPSPPARQLGPRSPRVGRGAEVHAMRSEASGFAGAA FT REVVADESDKIWVGEEGSGGRRGPGGAAPAHAPLLSAPMGSRRLEGISVEEAMVTRTQL FT LEEELSSLKEELALCQADKEFVWSLWKRLQVTNPDLTQVVSLVVEREKQKSEAKDRKVL FT EILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEI FT KDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAK FT IKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQ FT NSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEA FT MLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLE FT TLMVSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRSLS FT PKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAV FT KEQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEE FT LDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKV FT TELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDV FT EKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATM FT KVRSGRYDCKTTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWEDVSES FT SSDSEAQTSQTLGTIIVETSQKISPTEDGKDQKESDPTEDSQTQGKEIVQTYLNIDGKT FT PKDYFHDKNAKKPTFQKKNCKMQKSSHTAVPTRVNREKYKNITAQKSSSNIILLRERII FT SLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLR FT KEKEDLLKKLESSSEITSLAEENSQVTFPRIQVTSLSPSRSMDLEMKQLQYKLKNATNE FT LTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNLESNKS FT FSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDL FT KLTLLVSRISETESAMAEIETAASKQLQELALQSEQVLEGAQKTLLLANEKVEEFTTFV FT KALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDT FT EDQVEIEKTKIDAENDKEWMLYIQKLLEGQLPFASYLLEAVLEKINEKKKLVEGYFTIM FT KDIR" FT misc_feature 17499086..17651706 FT /note="annotated region of clone" FT polyA_signal 17503900..17503905 FT polyA_site 17503921 FT misc_feature 17552042 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 100bp by ECORI and HINDIII digest data" FT mRNA join(17579080..17579285,17630352..17630427) FT /gene="SH3GL2" FT /locus_tag="RP11-335L15.1-002" FT /product="SH3-domain GRB2-like 2" FT /note="match: ESTs: Em:BM925595.1" FT mRNA join(17579121..17579285,AL139115.5:95458..95526, FT AL139115.5:109829..109901,AL139115.5:134773..134916, FT AL139115.5:135772..135905,AL139115.5:137784..137942, FT AL139115.5:139623..139726,AL139115.5:141759..141889, FT AL139115.5:143936..145521) FT /gene="SH3GL2" FT /locus_tag="RP11-335L15.1-001" FT /product="SH3-domain GRB2-like 2" FT /note="match: cDNAs: Em:AB008161 Em:AF009602 Em:AF009603 FT Em:AF009604 Em:AF036268 Em:AF036268.1 Em:AF036269 FT Em:AF036270 Em:AF036271 Em:AF036272 Em:AF227439 FT Em:AK057744.1 Em:U58885 Em:U58886 Em:U58887 Em:U65999 FT Em:X99656 Em:X99657 Em:X99664" FT /note="match: ESTs: Em:AA429114.1 Em:AA626818.1 FT Em:AA912365.1 Em:AA985366.1 Em:AI002882.1 Em:AI044966.1 FT Em:AI121058.1 Em:AI501766.1 Em:AI631477.1 Em:AI633882.1 FT Em:AI650937.1 Em:AI703210.1 Em:AI813981.1 Em:AI916857.1 FT Em:AL134218 Em:AU035776 Em:AV342849 Em:AW146327.1 FT Em:AW149386.1 Em:AW197452.1 Em:AW213445.1 Em:AW615196.1 FT Em:BG705111.1 Em:BI919260.1 Em:D60046 Em:D81501 Em:H22727.1 FT Em:H24009.1 Em:R12817.1 Em:R20729.1 Em:R45990.1 Em:T15988.1 FT Em:Z40266 Em:Z43655 Em:Z44309" FT CDS join(17579241..17579285,AL139115.5:95458..95526, FT AL139115.5:109829..109901,AL139115.5:134773..134916, FT AL139115.5:135772..135905,AL139115.5:137784..137942, FT AL139115.5:139623..139726,AL139115.5:141759..141889, FT AL139115.5:143936..144135) FT /gene="SH3GL2" FT /locus_tag="RP11-335L15.1-001" FT /standard_name="OTTHUMP00000021084" FT /product="SH3-domain GRB2-like 2" FT /note="match: proteins: Sw:O35964 Sw:Q62419 Sw:Q62421 FT Sw:Q99961 Sw:Q99962 Sw:Q99963 Sw:Q99963 Sw:Q99963" FT /protein_id="CAH70742.1" FT /translation="MSVAGLKKQFHKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSR FT AVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGREL FT GDDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQHHLKKLEG FT RRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQ FT LEYHKQAVQILQQVTVRLEERIRQASSQPRREYQPKPRMSLEFPTGDSTQPNGGLSHTG FT TPKPSGVQMDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFP FT INYVEILVALPH" FT CDS complement(join(17589159..17590751,17590903..17591316)) FT /pseudo FT /locus_tag="RP11-163F8.3-001" FT /product="poly(A)-binding protein pseudogene" FT /note="match: proteins: Sw:P11940 Sw:P20965 Sw:P29341 FT Tr:Q62029" FT misc_feature 17613254 FT /note="Clone_left_end: RP11-335L15" FT mRNA join(AL162725.10:129835..130278,AL162725.10:138141..138229, FT AL354711.24:79833..79917,AL354711.24:89288..89422, FT AL354711.24:90039..90218,AL354711.24:127363..127496, FT AL354711.24:151820..151982,AL354738.13:2562..2756, FT AL354738.13:24136..24312,AL354738.13:26109..26234, FT AL354738.13:34331..34452,AL354738.13:35829..35948, FT AL354738.13:60121..60221,AL590377.4:18685..18776, FT AL590377.4:25057..25592,AL590377.4:39816..39996, FT AL590377.4:46311..46404,AL590377.4:46489..46712, FT AL590377.4:88047..88238,AL590377.4:93439..93536, FT AL590377.4:95020..95146,AL590377.4:96504..96641, FT AL590377.4:97229..97414,AL590377.4:114818..115003, FT AL590377.4:117512..117589,17502549..17503921) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-001" FT /product="centlein, centrosomal protein" FT /note="match: cDNAs: Em:AK000283.1 Em:BX647069.1" FT /note="match: ESTs: Em:BE971444.1 Em:BG215641.1" FT CDS join(AL162725.10:129919..130278,AL162725.10:138141..138229, FT AL354711.24:79833..79917,AL354711.24:89288..89422, FT AL354711.24:90039..90218,AL354711.24:127363..127496, FT AL354711.24:151820..151982,AL354738.13:2562..2756, FT AL354738.13:24136..24312,AL354738.13:26109..26234, FT AL354738.13:34331..34452,AL354738.13:35829..35948, FT AL354738.13:60121..60221,AL590377.4:18685..18776, FT AL590377.4:25057..25592,AL590377.4:39816..39996, FT AL590377.4:46311..46404,AL590377.4:46489..46712, FT AL590377.4:88047..88238,AL590377.4:93439..93536, FT AL590377.4:95020..95146,AL590377.4:96504..96641, FT AL590377.4:97229..97414,AL590377.4:114818..115003, FT AL590377.4:117512..117589,17502549..17502650) FT /gene="CNTLN" FT /locus_tag="RP11-163F8.4-001" FT /standard_name="OTTHUMP00000021083" FT /product="centlein, centrosomal protein" FT /note="match: proteins: Sw:Q9NXG0 Tr:Q8N1G9" FT /protein_id="CAH70743.2" FT /translation="MAARSPPSPHPSPPARQLGPRSPRVGRGAEVHAMRSEASGFAGAA FT REVVADESDKIWVGEEGSGGRRGPGGAAPAHAPLLSAPMGSRRLEGISVEEAMVTRTQL FT LEEELSSLKEELALCQADKEFVWSLWKRLQVTNPDLTQVVSLVVEREKQKSEAKDRKVL FT EILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEI FT KDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAK FT IKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQ FT NSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEA FT MLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLE FT TLMVSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRSLS FT PKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAV FT KEQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEE FT LDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKV FT TELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDV FT EKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATM FT KVRSGRYDCKTTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWEDVSES FT SSDSEAQTSQTLGTIIVETSQKISPTEDGKDQKESDPTEDSQTQGKEIVQTYLNIDGKT FT PKDYFHDKNAKKPTFQKKNCKMQKSSHTAVPTRVNREKYKNITAQKSSSNIILLRERII FT SLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLR FT KEKEDLLKKLESSSEITSLAEENSQVTFPRIQVTSLSPSRSMDLEMKQLQYKLKNATNE FT LTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNLESNKS FT FSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDL FT KLTLLVSRISETESAMAEIETAASKQLQELALQSEQVLEGAQKTLLLANEKVEEFTTFV FT KALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDT FT EDQVEIEKTKIDAENDKEWMLYIQKLLEGQLPFASYLLEAVLEKINEKKKLVEGYFTIM FT KDIR" FT misc_feature 17649706 FT /note="Clone_right_end: RP11-163F8" FT misc_feature 17651707..17799688 FT /note="annotated region of clone" FT mRNA join(AL133214.12:82036..82200,17747064..17747132, FT 17761435..17761507,17786379..17786522,17787378..17787511, FT 17789390..17789548,17791229..17791332,17793365..17793495, FT 17795542..17797127) FT /gene="SH3GL2" FT /locus_tag="RP11-335L15.1-001" FT /product="SH3-domain GRB2-like 2" FT /note="match: cDNAs: Em:AB008161 Em:AF009602 Em:AF009603 FT Em:AF009604 Em:AF036268 Em:AF036268.1 Em:AF036269 FT Em:AF036270 Em:AF036271 Em:AF036272 Em:AF227439 FT Em:AK057744.1 Em:U58885 Em:U58886 Em:U58887 Em:U65999 FT Em:X99656 Em:X99657 Em:X99664" FT /note="match: ESTs: Em:AA429114.1 Em:AA626818.1 FT Em:AA912365.1 Em:AA985366.1 Em:AI002882.1 Em:AI044966.1 FT Em:AI121058.1 Em:AI501766.1 Em:AI631477.1 Em:AI633882.1 FT Em:AI650937.1 Em:AI703210.1 Em:AI813981.1 Em:AI916857.1 FT Em:AL134218 Em:AU035776 Em:AV342849 Em:AW146327.1 FT Em:AW149386.1 Em:AW197452.1 Em:AW213445.1 Em:AW615196.1 FT Em:BG705111.1 Em:BI919260.1 Em:D60046 Em:D81501 Em:H22727.1 FT Em:H24009.1 Em:R12817.1 Em:R20729.1 Em:R45990.1 Em:T15988.1 FT Em:Z40266 Em:Z43655 Em:Z44309" FT CDS join(AL133214.12:82156..82200,17747064..17747132, FT 17761435..17761507,17786379..17786522,17787378..17787511, FT 17789390..17789548,17791229..17791332,17793365..17793495, FT 17795542..17795741) FT /gene="SH3GL2" FT /locus_tag="RP11-335L15.1-001" FT /standard_name="OTTHUMP00000021084" FT /product="SH3-domain GRB2-like 2" FT /note="match: proteins: Sw:O35964 Sw:Q62419 Sw:Q62421 FT Sw:Q99961 Sw:Q99962 Sw:Q99963 Sw:Q99963 Sw:Q99963" FT /protein_id="CAB92765.2" FT /translation="MSVAGLKKQFHKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSR FT AVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGREL FT GDDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQHHLKKLEG FT RRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQ FT LEYHKQAVQILQQVTVRLEERIRQASSQPRREYQPKPRMSLEFPTGDSTQPNGGLSHTG FT TPKPSGVQMDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFP FT INYVEILVALPH" FT polyA_signal 17797100..17797105 FT polyA_site 17797127 FT misc_feature 17799588 FT /note="Clone_right_end: RP11-335L15" FT misc_feature 17847216 FT /note="Clone_left_end: RP11-123J20" FT misc_feature 17941997 FT /note="Clone_right_end: RP11-397M22" FT misc_feature complement(17849216..18023851) FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon 18023322..18023355 FT /note="XPOUND prediction, score = 0.467" FT repeat_region complement(18022958..18023005) FT /rpt_family="gggaga repeat" FT /rpt_type=TANDEM FT /note="homology = 77.1%, counts = 8" FT exon 18022826..18022893 FT /note="MZEF prediction, score = 0.671" FT repeat_region complement(18020663..18020716) FT /rpt_family="THE" FT /note="92% identity: matches 1..54 of consensus" FT repeat_region complement(18020127..18020165) FT /rpt_family="catctacttccaa repeat" FT /rpt_type=TANDEM FT /note="homology = 92.3%, counts = 3" FT exon complement(18019616..18019707) FT /note="MZEF prediction, score = 0.618" FT exon complement(18019616..18019625) FT /note="XPOUND prediction, score = 0.209" FT exon complement(18017833..18017894) FT /note="MZEF prediction, score = 0.669" FT exon 18017670..18017725 FT /note="MZEF prediction, score = 0.874" FT exon 18016804..18016819 FT /note="XPOUND prediction, score = 0.271" FT exon complement(18016391..18016437) FT /note="XPOUND prediction, score = 0.297" FT exon 18014181..18014259 FT /note="XPOUND prediction, score = 0.551" FT exon 18012755..18012764 FT /note="XPOUND prediction, score = 0.348" FT exon 18011890..18011913 FT /note="XPOUND prediction, score = 0.332" FT exon 18011085..18011180 FT /note="MZEF prediction, score = 0.503" FT repeat_region complement(18009201..18009250) FT /rpt_family="agaggaagaa repeat" FT /rpt_type=TANDEM FT /note="homology = 80.0%, counts = 5" FT exon 18007406..18007459 FT /note="MZEF prediction, score = 0.645" FT exon 18006002..18006040 FT /note="XPOUND prediction, score = 0.696" FT exon 18005090..18005113 FT /note="XPOUND prediction, score = 0.266" FT exon complement(18003378..18003512) FT /note="MZEF prediction, score = 0.587" FT exon 18003315..18003390 FT /note="XPOUND prediction, score = 0.453" FT exon 18003212..18003288 FT /note="XPOUND prediction, score = 0.678" FT exon 18000788..18000821 FT /note="XPOUND prediction, score = 0.788" FT exon complement(18000434..18000557) FT /note="GENSCAN prediction, score = 7.38" FT repeat_region complement(17999779..18000288) FT /rpt_family="L1" FT /note="99% identity: matches 1459..1968 of consensus" FT repeat_region complement(17999615..17999742) FT /rpt_family="L1" FT /note="96% identity: matches 5882..6009 of consensus" FT exon 17999672..17999693 FT /note="XPOUND prediction, score = 0.298" FT exon 17999281..17999350 FT /note="MZEF prediction, score = 0.954" FT exon 17999282..17999337 FT /note="XPOUND prediction, score = 0.312" FT exon complement(17996141..17996341) FT /note="MZEF prediction, score = 0.868" FT exon 17995185..17995241 FT /note="MZEF prediction, score = 0.962" FT exon 17994195..17994214 FT /note="XPOUND prediction, score = 0.259" FT repeat_region complement(17994090..17994123) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 94.1%, counts = 17" FT repeat_region complement(17994089..17994119) FT /note="AC repeat" FT exon 17992203..17992209 FT /note="XPOUND prediction, score = 0.202" FT exon 17990889..17990902 FT /note="XPOUND prediction, score = 0.405" FT exon complement(17990583..17990638) FT /note="MZEF prediction, score = 0.534" FT repeat_region complement(17988551..17988564) FT /note="AAAAG repeat" FT exon 17986796..17986881 FT /note="MZEF prediction, score = 0.771" FT exon complement(17985880..17985956) FT /note="MZEF prediction, score = 0.517" FT repeat_region complement(17984095..17984105) FT /note="AC repeat" FT exon 17983415..17983437 FT /note="XPOUND prediction, score = 0.449" FT repeat_region 17983109..17983366 FT /rpt_family="L1" FT /note="86% identity: matches 268..526 of consensus" FT repeat_region complement(17983087..17983366) FT /rpt_family="ALU" FT /note="91% identity: matches 1..279 of consensus" FT repeat_region complement(17983054..17983366) FT /rpt_type=INVERTED FT /note="IR1, 85% complementary to IR1' (41209..41521)" FT repeat_region complement(17983021..17983086) FT /rpt_family="aaaaaagaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 78.8%, counts = 6" FT repeat_region complement(17983055..17983077) FT /note="AAAG repeat" FT repeat_region complement(17982331..17982643) FT /rpt_type=INVERTED FT /note="IR1', 85% complementary to IR1 (40486..40798)" FT repeat_region complement(17982616..17982638) FT /note="TTTA repeat" FT repeat_region complement(17982345..17982610) FT /rpt_family="L1" FT /note="86% identity: matches 160..424 of consensus" FT repeat_region 17982341..17982609 FT /rpt_family="ALU" FT /note="89% identity: matches 10..278 of consensus" FT exon 17980874..17980892 FT /note="XPOUND prediction, score = 0.222" FT exon 17979953..17980000 FT /note="GENSCAN prediction, score = 5.50" FT exon 17979921..17980000 FT /note="MZEF prediction, score = 0.708" FT exon 17979806..17979864 FT /note="XPOUND prediction, score = 0.532" FT STS complement(17978981..17979130) FT /standard_name="EST229537 (D12S1978), Map: 61.5, Homo FT sapiens" FT /note="GenBank Accession Number: G25619" FT exon complement(17978316..17978501) FT /note="MZEF prediction, score = 0.920" FT repeat_region complement(17978324..17978479) FT /rpt_family="aaaaagaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 62.2%, counts = 12" FT repeat_region complement(17977120..17977341) FT /rpt_family="L1" FT /note="79% identity: matches 3512..3733 of consensus" FT exon 17976841..17976892 FT /note="MZEF prediction, score = 0.590" FT repeat_region complement(17976747..17976761) FT /note="GATG repeat" FT repeat_region complement(17976708..17976730) FT /note="AGGG repeat" FT repeat_region complement(17976665..17976720) FT /rpt_family="gaga repeat" FT /rpt_type=TANDEM FT /note="homology = 83.9%, counts = 14" FT repeat_region complement(17976652..17976663) FT /note="GA repeat" FT repeat_region complement(17976098..17976176) FT /rpt_family="L1" FT /note="84% identity: matches 15..93 of consensus" FT exon complement(17975614..17975700) FT /note="MZEF prediction, score = 0.550" FT repeat_region complement(17974905..17974975) FT /rpt_family="L1" FT /note="85% identity: matches 5322..5392 of consensus" FT repeat_region complement(17974784..17974840) FT /rpt_family="L1" FT /note="94% identity: matches 589..645 of consensus" FT repeat_region complement(17974602..17974698) FT /rpt_family="L1" FT /note="86% identity: matches 4..100 of consensus" FT exon complement(17974497..17974565) FT /note="MZEF prediction, score = 0.505" FT repeat_region 17974029..17974396 FT /rpt_family="L1" FT /note="96% identity: matches 3805..4172 of consensus" FT repeat_region complement(17972327..17974027) FT /rpt_family="L1" FT /note="95% identity: matches 279..1979 of consensus" FT exon complement(17972821..17973947) FT /note="GENSCAN prediction, score = 17.40" FT repeat_region complement(17972193..17972305) FT /rpt_family="L1" FT /note="94% identity: matches 151..263 of consensus" FT exon 17972215..17972246 FT /note="XPOUND prediction, score = 0.259" FT repeat_region complement(17972128..17972183) FT /rpt_family="aaaataaa repeat" FT /rpt_type=TANDEM FT /note="homology = 76.8%, counts = 7" FT repeat_region complement(17972166..17972178) FT /note="ATA repeat" FT repeat_region complement(17971987..17972088) FT /rpt_family="L1" FT /note="86% identity: matches 45..147 of consensus" FT exon complement(17969546..17969607) FT /note="MZEF prediction, score = 0.958" FT exon 17968969..17968974 FT /note="XPOUND prediction, score = 0.413" FT exon 17967149..17967165 FT /note="XPOUND prediction, score = 0.357" FT exon complement(17966421..17966485) FT /note="GENSCAN prediction, score = 0.97" FT exon 17966395..17966448 FT /note="XPOUND prediction, score = 0.378" FT repeat_region complement(17964958..17965039) FT /rpt_family="ALU" FT /note="87% identity: matches 146..227 of consensus" FT repeat_region 17964893..17964953 FT /rpt_family="L1" FT /note="93% identity: matches 167..227 of consensus" FT repeat_region complement(17964887..17964953) FT /rpt_family="ALU" FT /note="94% identity: matches 213..279 of consensus" FT repeat_region complement(17964862..17964884) FT /note="AAAAG repeat" FT exon 17962586..17962619 FT /note="XPOUND prediction, score = 0.292" FT exon complement(17961641..17961800) FT /note="GENSCAN prediction, score = 2.93" FT repeat_region complement(17961264..17961548) FT /rpt_family="ALU" FT /note="87% identity: matches 1..284 of consensus" FT repeat_region 17961424..17961537 FT /rpt_family="L1" FT /note="88% identity: matches 472..585 of consensus" FT repeat_region 17961336..17961381 FT /rpt_family="L1" FT /note="91% identity: matches 383..428 of consensus" FT repeat_region complement(17961244..17961258) FT /note="AAT repeat" FT exon complement(17960046..17960117) FT /note="MZEF prediction, score = 0.635" FT repeat_region 17959481..17959728 FT /rpt_family="L1" FT /note="83% identity: matches 167..413 of consensus" FT repeat_region complement(17959475..17959728) FT /rpt_family="ALU" FT /note="88% identity: matches 3..259 of consensus" FT repeat_region complement(17959426..17959474) FT /rpt_family="aaaaata repeat" FT /rpt_type=TANDEM FT /note="homology = 79.6%, counts = 7" FT exon 17958529..17958541 FT /note="XPOUND prediction, score = 0.224" FT exon 17957378..17957439 FT /note="XPOUND prediction, score = 0.383" FT exon complement(17956171..17956276) FT /note="MZEF prediction, score = 0.929" FT exon 17954874..17954921 FT /note="GENSCAN prediction, score = 0.68" FT exon 17954869..17954921 FT /note="MZEF prediction, score = 0.676" FT exon 17954832..17954921 FT /note="XPOUND prediction, score = 0.575" FT repeat_region complement(17952916..17952954) FT /note="AGG repeat" FT repeat_region complement(17952901..17952954) FT /rpt_family="agg repeat" FT /rpt_type=TANDEM FT /note="homology = 90.7%, counts = 18" FT repeat_region complement(17952689..17952824) FT /rpt_family="ALU" FT /note="86% identity: matches 1..138 of consensus" FT repeat_region 17952692..17952753 FT /rpt_family="L1" FT /note="88% identity: matches 464..525 of consensus" FT repeat_region complement(17952653..17952687) FT /rpt_family="ALU" FT /note="97% identity: matches 92..126 of consensus" FT repeat_region complement(17952589..17952644) FT /rpt_family="ALU" FT /note="92% identity: matches 251..306 of consensus" FT repeat_region complement(17952172..17952240) FT /rpt_family="ALU" FT /note="89% identity: matches 328..396 of consensus" FT repeat_region 17952200..17952237 FT /rpt_family="L1" FT /note="94% identity: matches 387..424 of consensus" FT repeat_region complement(17952106..17952120) FT /note="AAAG repeat" FT repeat_region complement(17952050..17952103) FT /rpt_family="ALU" FT /note="88% identity: matches 441..494 of consensus" FT repeat_region complement(17951980..17952029) FT /rpt_family="ALU" FT /note="92% identity: matches 325..374 of consensus" FT repeat_region complement(17951834..17951895) FT /rpt_family="ALU" FT /note="87% identity: matches 543..604 of consensus" FT repeat_region complement(17951560..17951832) FT /rpt_family="aaaaataaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 56.4%, counts = 21" FT exon 17950727..17950812 FT /note="MZEF prediction, score = 0.545" FT exon 17950727..17950767 FT /note="XPOUND prediction, score = 0.227" FT repeat_region complement(17950120..17950193) FT /rpt_family="ALU" FT /note="90% identity: matches 328..401 of consensus" FT repeat_region complement(17949935..17950121) FT /rpt_family="ALU" FT /note="85% identity: matches 97..282 of consensus" FT repeat_region 17949987..17950104 FT /rpt_family="L1" FT /note="82% identity: matches 702..822 of consensus" FT repeat_region 17949943..17950026 FT /rpt_family="L1" FT /note="89% identity: matches 169..252 of consensus" FT repeat_region complement(17947303..17947344) FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 97.6%, counts = 21" FT repeat_region complement(17947303..17947344) FT /note="GT repeat" FT repeat_region complement(17947299..17947344) FT /rpt_type=INVERTED FT /note="IR2, 95% complementary to IR2' (77739..77784)" FT repeat_region complement(17947125..17947178) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 81.5%, counts = 27" FT exon 17946317..17946355 FT /note="XPOUND prediction, score = 0.363" FT repeat_region complement(17946068..17946113) FT /rpt_type=INVERTED FT /note="IR2', 95% complementary to IR2 (76508..76553)" FT repeat_region complement(17946057..17946109) FT /note="AC repeat" FT repeat_region complement(17946052..17946109) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 98.3%, counts = 29" FT repeat_region complement(17945960..17945975) FT /note="TTA repeat" FT repeat_region 17945838..17945968 FT /rpt_family="L1" FT /note="97% identity: matches 408..538 of consensus" FT repeat_region 17944150..17945811 FT /rpt_family="L1" FT /note="96% identity: matches 318..1979 of consensus" FT exon 17945616..17945660 FT /note="XPOUND prediction, score = 0.876" FT exon 17944191..17945317 FT /note="GENSCAN prediction, score = 17.90" FT exon complement(17945221..17945233) FT /note="XPOUND prediction, score = 0.699" FT exon 17944172..17944391 FT /note="MZEF prediction, score = 0.527" FT repeat_region complement(17943969..17944086) FT /rpt_family="THE" FT /note="85% identity: matches 50..168 of consensus" FT repeat_region complement(18027444..18027525) FT /rpt_family="L1" FT /note="85% identity: matches 2276..2357 of consensus" FT repeat_region complement(18027394..18027447) FT /rpt_family="aaataaaat repeat" FT /rpt_type=TANDEM FT /note="homology = 77.8%, counts = 6" FT repeat_region complement(18026892..18027017) FT /rpt_family="L1" FT /note="84% identity: matches 3314..3440 of consensus" FT repeat_region complement(18026577..18026832) FT /rpt_family="L1" FT /note="82% identity: matches 1146..1401 of consensus" FT repeat_region complement(18026437..18026513) FT /rpt_family="L1" FT /note="89% identity: matches 343..419 of consensus" FT repeat_region complement(18026177..18026368) FT /rpt_family="L1" FT /note="81% identity: matches 517..708 of consensus" FT exon complement(18026166..18026236) FT /note="MZEF prediction, score = 0.713" FT repeat_region complement(18025794..18025992) FT /rpt_family="L1" FT /note="84% identity: matches 921..1120 of consensus" FT repeat_region complement(18025353..18025718) FT /rpt_family="L1" FT /note="84% identity: matches 2231..2599 of consensus" FT repeat_region complement(18025189..18025301) FT /rpt_family="L1" FT /note="85% identity: matches 517..629 of consensus" FT repeat_region complement(18025124..18025241) FT /rpt_family="L1" FT /note="86% identity: matches 2..120 of consensus" FT repeat_region complement(18024859..18025007) FT /rpt_family="L1" FT /note="84% identity: matches 335..480 of consensus" FT repeat_region complement(18024775..18024904) FT /rpt_family="L1" FT /note="86% identity: matches 40..170 of consensus" FT repeat_region complement(18024499..18024813) FT /rpt_family="L1" FT /note="82% identity: matches 3744..4057 of consensus" FT exon 18024563..18024591 FT /note="XPOUND prediction, score = 0.248" FT repeat_region complement(18024413..18024509) FT /rpt_family="L1" FT /note="87% identity: matches 203..298 of consensus" FT repeat_region complement(18024409..18024421) FT /note="GGAG repeat" FT repeat_region complement(18024312..18024390) FT /rpt_family="L1" FT /note="88% identity: matches 561..639 of consensus" FT repeat_region complement(18024241..18024254) FT /note="AATA repeat" FT repeat_region complement(18024032..18024044) FT /note="AGA repeat" FT misc_feature complement(18027603..18188360) FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon complement(18187792..18187841) FT /note="MZEF prediction, score = 0.887" FT repeat_region complement(18187730..18187773) FT /rpt_family="ttcc repeat" FT /rpt_type=TANDEM FT /note="homology = 77.3%, counts = 11" FT exon 18187226..18187324 FT /note="GENSCAN prediction, score = 2.21" FT /note="MZEF prediction, score = 0.553" FT repeat_region complement(18186831..18186892) FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 80.6%, counts = 31" FT repeat_region complement(18186831..18186859) FT /note="TG repeat" FT exon complement(18186089..18186255) FT /note="MZEF prediction, score = 0.661" FT repeat_region 18185516..18185549 FT /rpt_family="THE" FT /note="97% identity: matches 22..55 of consensus" FT exon 18184230..18184361 FT /note="XPOUND prediction, score = 0.680" FT repeat_region 18182155..18182283 FT /rpt_family="L1" FT /note="95% identity: matches 1166..1294 of consensus" FT exon complement(18182214..18182219) FT /note="XPOUND prediction, score = 0.240" FT repeat_region 18180554..18182138 FT /rpt_family="L1" FT /note="95% identity: matches 401..1984 of consensus" FT exon 18180768..18181638 FT /note="GENSCAN prediction, score = 2.26" FT exon complement(18181542..18181554) FT /note="XPOUND prediction, score = 0.215" FT repeat_region 18180250..18180527 FT /rpt_family="ALU" FT /note="98% identity: matches 1..278 of consensus" FT repeat_region complement(18180250..18180527) FT /rpt_family="L1" FT /note="91% identity: matches 248..526 of consensus" FT misc_feature complement(18180253..18180404) FT /note="CpG_island (%GC=57.9, o/e=1.08, #CpGs=13)" FT repeat_region 18178015..18180249 FT /rpt_family="L1" FT /note="95% identity: matches 5..2243 of consensus" FT exon 18179187..18179628 FT /note="GENSCAN prediction, score = 28.27" FT exon complement(18178774..18178799) FT /note="XPOUND prediction, score = 0.376" FT exon complement(18178373..18178410) FT /note="XPOUND prediction, score = 0.260" FT exon 18177598..18177615 FT /note="XPOUND prediction, score = 0.393" FT exon 18177526..18177539 FT /note="XPOUND prediction, score = 0.213" FT repeat_region complement(18177214..18177226) FT /note="CATT repeat" FT exon 18176804..18176978 FT /note="MZEF prediction, score = 0.840" FT repeat_region complement(18176382..18176441) FT /rpt_family="tat repeat" FT /rpt_type=TANDEM FT /note="homology = 73.3%, counts = 20" FT repeat_region complement(18176420..18176431) FT /note="ATT repeat" FT exon 18176033..18176076 FT /note="MZEF prediction, score = 0.763" FT STS complement(18175852..18175993) FT /standard_name="SHGC-16985 (D1S1563), Map: 9, Homo sapiens" FT /note="GenBank Accession Number: G15514" FT STS complement(18175747..18175964) FT /standard_name="TIGR-A003M39 (D12S1978), Map: 62.1, Homo FT sapiens" FT /note="GenBank Accession Number: G26344" FT exon complement(18175312..18175366) FT /note="MZEF prediction, score = 0.941" FT STS complement(18174101..18174293) FT /standard_name="A005O33 (D12S8), Map: 6p11, Homo sapiens" FT /note="GenBank Accession Number: G20382" FT exon 18172684..18172721 FT /note="MZEF prediction, score = 0.545" FT exon 18172425..18172495 FT /note="MZEF prediction, score = 0.677" FT repeat_region 18172148..18172272 FT /rpt_family="L1" FT /note="92% identity: matches 5382..5506 of consensus" FT repeat_region 18171992..18172108 FT /rpt_family="L1" FT /note="91% identity: matches 314..430 of consensus" FT repeat_region complement(18171561..18171993) FT /rpt_family="L1" FT /note="94% identity: matches 325..758 of consensus" FT exon 18169829..18169884 FT /note="MZEF prediction, score = 0.792" FT repeat_region complement(18168257..18169820) FT /rpt_family="L1" FT /note="95% identity: matches 446..2011 of consensus" FT exon 18169590..18169602 FT /note="XPOUND prediction, score = 0.376" FT repeat_region complement(18168128..18168254) FT /rpt_family="L1" FT /note="96% identity: matches 317..443 of consensus" FT exon 18168166..18168179 FT /note="XPOUND prediction, score = 0.217" FT exon 18167588..18167604 FT /note="XPOUND prediction, score = 0.310" FT exon 18163860..18164060 FT /note="GENSCAN prediction, score = 8.61" FT exon 18163860..18163979 FT /note="MZEF prediction, score = 0.557" FT exon 18163860..18163879 FT /note="XPOUND prediction, score = 0.290" FT repeat_region complement(18160889..18160985) FT /rpt_family="ALU" FT /note="84% identity: matches 1..97 of consensus" FT repeat_region complement(18160772..18160818) FT /rpt_family="ALU" FT /note="93% identity: matches 429..475 of consensus" FT repeat_region complement(18160666..18160691) FT /note="AATT repeat" FT repeat_region complement(18160656..18160691) FT /rpt_family="aatt repeat" FT /rpt_type=TANDEM FT /note="homology = 86.1%, counts = 9" FT exon complement(18160550..18160659) FT /note="MZEF prediction, score = 0.503" FT exon 18160479..18160545 FT /note="XPOUND prediction, score = 0.621" FT repeat_region complement(18156636..18156660) FT /note="TG repeat" FT repeat_region complement(18156619..18156660) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 90.5%, counts = 21" FT repeat_region complement(18155571..18155665) FT /rpt_family="MER30" FT /note="86% identity: matches 2..100 of consensus" FT repeat_region complement(18155495..18155539) FT /rpt_family="MER30" FT /note="100% identity: matches 120..164 of consensus" FT exon 18155455..18155508 FT /note="XPOUND prediction, score = 0.312" FT exon complement(18155324..18155421) FT /note="XPOUND prediction, score = 0.409" FT exon complement(18153835..18153843) FT /note="XPOUND prediction, score = 0.204" FT repeat_region complement(18151713..18151776) FT /rpt_family="tatgtgttttgggcct repeat" FT /rpt_type=TANDEM FT /note="homology = 85.9%, counts = 4" FT exon complement(18149208..18149341) FT /note="MZEF prediction, score = 0.549" FT repeat_region complement(18148590..18148603) FT /note="AAAAT repeat" FT exon 18147092..18147136 FT /note="MZEF prediction, score = 0.925" FT exon complement(18145392..18145402) FT /note="XPOUND prediction, score = 0.419" FT repeat_region complement(18144247..18144493) FT /rpt_family="ALU" FT /note="87% identity: matches 10..254 of consensus" FT repeat_region 18144315..18144492 FT /rpt_family="L1" FT /note="85% identity: matches 405..585 of consensus" FT exon complement(18144403..18144429) FT /note="XPOUND prediction, score = 0.387" FT repeat_region complement(18144189..18144224) FT /rpt_family="aaag repeat" FT /rpt_type=TANDEM FT /note="homology = 94.4%, counts = 9" FT repeat_region complement(18144190..18144220) FT /note="AAAG repeat" FT exon 18142515..18142571 FT /note="GENSCAN prediction, score = 1.96" FT repeat_region complement(18142240..18142256) FT /rpt_type=INVERTED FT /note="IR1, 100% complementary to IR1' (47381..47397)" FT repeat_region complement(18140964..18140980) FT /rpt_type=INVERTED FT /note="IR1', 100% complementary to IR1 (46105..46121)" FT exon 18139592..18139609 FT /note="XPOUND prediction, score = 0.227" FT exon 18138507..18138615 FT /note="XPOUND prediction, score = 0.833" FT exon 18138139..18138179 FT /note="GENSCAN prediction, score = 0.62" FT repeat_region complement(18137000..18137014) FT /note="TTCCC repeat" FT exon 18135842..18135887 FT /note="XPOUND prediction, score = 0.316" FT repeat_region complement(18135676..18135735) FT /rpt_family="atatacatatgatat repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 4" FT repeat_region 18135523..18135562 FT /rpt_family="ALU" FT /note="95% identity: matches 149..188 of consensus" FT repeat_region complement(18135523..18135562) FT /rpt_family="L1" FT /note="95% identity: matches 749..788 of consensus" FT repeat_region complement(18129888..18129901) FT /note="CTTTC repeat" FT exon 18129394..18129473 FT /note="XPOUND prediction, score = 0.324" FT repeat_region complement(18128506..18128608) FT /rpt_family="ALU" FT /note="84% identity: matches 1..103 of consensus" FT repeat_region complement(18128401..18128504) FT /rpt_family="ALU" FT /note="83% identity: matches 943..1046 of consensus" FT STS complement(18127826..18128150) FT /standard_name="SHGC-103302 (D11S4975), Map: 9, Homo FT sapiens" FT /note="GenBank Accession Number: G57598" FT exon 18127816..18127826 FT /note="XPOUND prediction, score = 0.237" FT exon 18127628..18127641 FT /note="XPOUND prediction, score = 0.251" FT repeat_region complement(18127481..18127520) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 20" FT repeat_region complement(18127480..18127520) FT /note="TG repeat" FT exon 18126917..18126949 FT /note="XPOUND prediction, score = 0.257" FT exon 18125649..18125659 FT /note="XPOUND prediction, score = 0.211" FT repeat_region complement(18125059..18125428) FT /rpt_family="THE" FT /note="87% identity: matches 1..371 of consensus" FT exon 18125174..18125276 FT /note="GENSCAN prediction, score = 8.45" FT exon 18125160..18125215 FT /note="XPOUND prediction, score = 0.333" FT exon 18125155..18125158 FT /note="XPOUND prediction, score = 0.200" FT repeat_region complement(18124128..18124370) FT /rpt_family="ALU" FT /note="86% identity: matches 311..554 of consensus" FT repeat_region 18124185..18124368 FT /rpt_family="L1" FT /note="86% identity: matches 331..516 of consensus" FT repeat_region 18124130..18124224 FT /rpt_family="L1" FT /note="86% identity: matches 192..286 of consensus" FT repeat_region complement(18124009..18124098) FT /rpt_family="aaaaaaacaa repeat" FT /rpt_type=TANDEM FT /note="homology = 66.7%, counts = 9" FT repeat_region complement(18123987..18124049) FT /rpt_family="L1" FT /note="95% identity: matches 123..185 of consensus" FT repeat_region complement(18123810..18123852) FT /rpt_type=INVERTED FT /note="IR2, 79% complementary to IR2' (66328..66370)" FT repeat_region 18122904..18123034 FT /rpt_family="L1" FT /note="82% identity: matches 464..594 of consensus" FT repeat_region complement(18122904..18123011) FT /rpt_family="ALU" FT /note="87% identity: matches 491..598 of consensus" FT repeat_region complement(18121991..18122033) FT /rpt_type=INVERTED FT /note="IR2', 79% complementary to IR2 (64509..64551)" FT exon 18120975..18120988 FT /note="XPOUND prediction, score = 0.303" FT repeat_region complement(18120646..18120656) FT /note="TG repeat" FT repeat_region complement(18119309..18119580) FT /rpt_family="ALU" FT /note="83% identity: matches 20..278 of consensus" FT repeat_region 18119309..18119580 FT /rpt_family="L1" FT /note="83% identity: matches 161..418 of consensus" FT repeat_region complement(18116722..18116837) FT /rpt_family="L1" FT /note="95% identity: matches 1808..1923 of consensus" FT exon 18116746..18116780 FT /note="XPOUND prediction, score = 0.546" FT repeat_region complement(18116666..18116742) FT /rpt_family="aaaataataaa repeat" FT /rpt_type=TANDEM FT /note="homology = 71.4%, counts = 7" FT exon 18115995..18116047 FT /note="XPOUND prediction, score = 0.413" FT repeat_region complement(18115339..18115361) FT /note="CCTG repeat" FT exon complement(18114972..18114999) FT /note="XPOUND prediction, score = 0.302" FT exon complement(18114929..18114967) FT /note="XPOUND prediction, score = 0.300" FT exon complement(18113201..18113244) FT /note="XPOUND prediction, score = 0.556" FT exon 18112985..18112993 FT /note="XPOUND prediction, score = 0.589" FT exon 18112978..18112982 FT /note="XPOUND prediction, score = 0.233" FT exon 18112017..18112045 FT /note="XPOUND prediction, score = 0.729" FT exon 18111966..18112045 FT /note="MZEF prediction, score = 0.631" FT exon complement(18109225..18109813) FT /note="GENSCAN prediction, score = 12.20" FT exon 18109755..18109775 FT /note="XPOUND prediction, score = 0.358" FT repeat_region complement(18108325..18108497) FT /rpt_family="ALU" FT /note="83% identity: matches 1..175 of consensus" FT repeat_region complement(18108232..18108377) FT /rpt_family="ALU" FT /note="82% identity: matches 603..749 of consensus" FT exon 18108254..18108324 FT /note="XPOUND prediction, score = 0.341" FT exon 18107913..18107936 FT /note="XPOUND prediction, score = 0.202" FT repeat_region complement(18107165..18107194) FT /rpt_type=INVERTED FT /note="IR3, 100% complementary to IR3' (81617..81646)" FT repeat_region complement(18106715..18106744) FT /rpt_type=INVERTED FT /note="IR3', 100% complementary to IR3 (81167..81196)" FT exon 18106655..18106698 FT /note="XPOUND prediction, score = 0.318" FT exon complement(18105655..18105727) FT /note="MZEF prediction, score = 0.709" FT exon complement(18104859..18104911) FT /note="MZEF prediction, score = 0.937" FT repeat_region complement(18104790..18104821) FT /rpt_family="aattgaat repeat" FT /rpt_type=TANDEM FT /note="homology = 93.8%, counts = 4" FT exon complement(18104626..18104732) FT /note="MZEF prediction, score = 0.777" FT repeat_region complement(18104022..18104035) FT /note="CA repeat" FT exon 18103495..18103597 FT /note="MZEF prediction, score = 0.923" FT exon 18101780..18101830 FT /note="XPOUND prediction, score = 0.395" FT exon 18101602..18101688 FT /note="MZEF prediction, score = 0.820" FT repeat_region complement(18101370..18101506) FT /rpt_type=INVERTED FT /note="IR4, 77% complementary to IR4' (87939..88075)" FT repeat_region complement(18101228..18101495) FT /rpt_family="L1" FT /note="81% identity: matches 161..424 of consensus" FT repeat_region 18101223..18101473 FT /rpt_family="ALU" FT /note="84% identity: matches 9..257 of consensus" FT exon 18101187..18101322 FT /note="MZEF prediction, score = 0.766" FT exon 18101281..18101312 FT /note="XPOUND prediction, score = 0.355" FT exon 18101215..18101224 FT /note="XPOUND prediction, score = 0.239" FT repeat_region 18100304..18100422 FT /rpt_family="L1" FT /note="81% identity: matches 168..286 of consensus" FT repeat_region complement(18100286..18100422) FT /rpt_family="ALU" FT /rpt_type=INVERTED FT /note="IR4', 77% complementary to IR4 (86855..86991)" FT /note="83% identity: matches 157..293 of consensus" FT exon complement(18099833..18099952) FT /note="MZEF prediction, score = 0.512" FT repeat_region 18099761..18099923 FT /rpt_family="L1" FT /note="89% identity: matches 363..526 of consensus" FT repeat_region complement(18099761..18099909) FT /rpt_family="ALU" FT /note="91% identity: matches 13..161 of consensus" FT repeat_region complement(18099652..18099761) FT /rpt_family="ALU" FT /note="92% identity: matches 1258..1367 of consensus" FT repeat_region 18099652..18099761 FT /rpt_family="L1" FT /note="88% identity: matches 243..352 of consensus" FT repeat_region complement(18099502..18099653) FT /rpt_family="aataaagaaagaaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 64.5%, counts = 8" FT repeat_region complement(18099341..18099357) FT /rpt_type=INVERTED FT /note="IR5, 100% complementary to IR5' (89023..89039)" FT repeat_region complement(18099325..18099354) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 15" FT repeat_region complement(18099325..18099354) FT /note="AT repeat" FT repeat_region complement(18099322..18099338) FT /rpt_type=INVERTED FT /note="IR5', 100% complementary to IR5 (89004..89020)" FT exon complement(18096294..18096323) FT /note="MZEF prediction, score = 0.607" FT repeat_region complement(18095461..18095710) FT /rpt_family="ALU" FT /note="89% identity: matches 146..394 of consensus" FT repeat_region 18095445..18095707 FT /rpt_family="L1" FT /note="87% identity: matches 167..424 of consensus" FT repeat_region complement(18095404..18095417) FT /note="AAAG repeat" FT exon 18095081..18095124 FT /note="XPOUND prediction, score = 0.287" FT repeat_region complement(18094747..18094852) FT /rpt_family="ALU" FT /note="91% identity: matches 150..255 of consensus" FT repeat_region 18094747..18094828 FT /rpt_family="L1" FT /note="89% identity: matches 410..490 of consensus" FT repeat_region complement(18094635..18094725) FT /rpt_family="ALU" FT /note="94% identity: matches 989..1079 of consensus" FT repeat_region 18094635..18094702 FT /rpt_family="L1" FT /note="89% identity: matches 219..286 of consensus" FT exon 18093723..18093736 FT /note="XPOUND prediction, score = 0.208" FT exon 18093422..18093464 FT /note="XPOUND prediction, score = 0.334" FT repeat_region complement(18091857..18091875) FT /note="CACT repeat" FT repeat_region complement(18091068..18091094) FT /note="AC repeat" FT repeat_region complement(18091049..18091094) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 91.3%, counts = 23" FT repeat_region complement(18091049..18091060) FT /note="AC repeat" FT exon 18090978..18090990 FT /note="XPOUND prediction, score = 0.218" FT repeat_region 18090399..18090507 FT /rpt_family="L1" FT /note="84% identity: matches 324..434 of consensus" FT repeat_region 18090212..18090332 FT /rpt_family="L1" FT /note="83% identity: matches 336..456 of consensus" FT exon 18090084..18090144 FT /note="MZEF prediction, score = 0.673" FT repeat_region 18089226..18089570 FT /rpt_family="L1" FT /note="91% identity: matches 210..554 of consensus" FT exon complement(18089509..18089521) FT /note="XPOUND prediction, score = 0.236" FT exon 18089265..18089375 FT /note="XPOUND prediction, score = 0.470" FT repeat_region complement(18089180..18089227) FT /rpt_family="L1" FT /note="95% identity: matches 2424..2471 of consensus" FT repeat_region 18089067..18089150 FT /rpt_family="ALU" FT /note="88% identity: matches 407..489 of consensus" FT repeat_region complement(18089068..18089133) FT /rpt_family="L1" FT /note="86% identity: matches 177..242 of consensus" FT exon complement(18089094..18089127) FT /note="XPOUND prediction, score = 0.247" FT repeat_region 18088977..18089036 FT /rpt_family="L1" FT /note="88% identity: matches 2659..2718 of consensus" FT repeat_region 18088586..18088671 FT /rpt_family="L1" FT /note="84% identity: matches 2274..2359 of consensus" FT exon complement(18085971..18086067) FT /note="XPOUND prediction, score = 0.633" FT repeat_region complement(18085716..18085803) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 69.3%, counts = 44" FT repeat_region complement(18085688..18085794) FT /rpt_type=INVERTED FT /note="IR6, 75% complementary to IR6' (102783..102890)" FT repeat_region complement(18085779..18085793) FT /note="TG repeat" FT repeat_region complement(18085768..18085778) FT /note="AT repeat" FT repeat_region complement(18085695..18085706) FT /note="TA repeat" FT repeat_region complement(18085683..18085694) FT /note="CA repeat" FT repeat_region complement(18085654..18085664) FT /note="AC repeat" FT repeat_region complement(18085481..18085594) FT /rpt_family="tgtatatatatatacacag repeat" FT /rpt_type=TANDEM FT /note="homology = 78.1%, counts = 6" FT repeat_region complement(18085579..18085589) FT /note="AC repeat" FT repeat_region complement(18085471..18085578) FT /rpt_type=INVERTED FT /note="IR6', 75% complementary to IR6 (102567..102673)" FT repeat_region complement(18085527..18085537) FT /note="TA repeat" FT repeat_region complement(18085508..18085518) FT /note="TA repeat" FT repeat_region complement(18085481..18085497) FT /note="TA repeat" FT exon complement(18085279..18085372) FT /note="GENSCAN prediction, score = 4.19" FT exon complement(18085315..18085367) FT /note="XPOUND prediction, score = 0.721" FT exon complement(18085279..18085331) FT /note="MZEF prediction, score = 0.543" FT exon 18084902..18084962 FT /note="MZEF prediction, score = 0.560" FT repeat_region complement(18084652..18084715) FT /rpt_family="ggga repeat" FT /rpt_type=TANDEM FT /note="homology = 84.4%, counts = 16" FT repeat_region complement(18084687..18084707) FT /note="GGGA repeat" FT repeat_region complement(18084651..18084664) FT /note="AGGG repeat" FT repeat_region complement(18084526..18084539) FT /note="TTTTC repeat" FT repeat_region complement(18084252..18084519) FT /rpt_family="L1" FT /note="85% identity: matches 161..424 of consensus" FT repeat_region 18084238..18084519 FT /rpt_family="ALU" FT /note="90% identity: matches 1..280 of consensus" FT repeat_region complement(18084332..18084422) FT /rpt_type=INVERTED FT /note="IR7, 85% complementary to IR7' (105846..105936)" FT exon 18083570..18083730 FT /note="MZEF prediction, score = 0.638" FT exon complement(18083618..18083633) FT /note="XPOUND prediction, score = 0.404" FT exon 18083198..18083250 FT /note="MZEF prediction, score = 0.985" FT exon 18082549..18082781 FT /note="MZEF prediction, score = 0.705" FT exon complement(18082648..18082741) FT /note="GENSCAN prediction, score = 1.30" FT exon complement(18082655..18082672) FT /note="XPOUND prediction, score = 0.210" FT repeat_region 18082381..18082517 FT /rpt_family="L1" FT /note="83% identity: matches 214..350 of consensus" FT repeat_region complement(18082334..18082517) FT /rpt_family="ALU" FT /note="85% identity: matches 93..274 of consensus" FT repeat_region complement(18082425..18082515) FT /rpt_type=INVERTED FT /note="IR7', 85% complementary to IR7 (103939..104029)" FT repeat_region complement(18079682..18079741) FT /rpt_family="tatt repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 15" FT repeat_region complement(18079681..18079727) FT /note="TTTA repeat" FT repeat_region 18079406..18079679 FT /rpt_family="ALU" FT /note="90% identity: matches 5..274 of consensus" FT repeat_region complement(18079406..18079679) FT /rpt_family="L1" FT /note="87% identity: matches 245..515 of consensus" FT exon 18079386..18079497 FT /note="MZEF prediction, score = 0.558" FT exon 18079118..18079146 FT /note="XPOUND prediction, score = 0.303" FT exon 18078495..18078505 FT /note="XPOUND prediction, score = 0.275" FT exon 18077629..18077642 FT /note="XPOUND prediction, score = 0.222" FT repeat_region complement(18077080..18077096) FT /note="CCT repeat" FT repeat_region complement(18075034..18075105) FT /rpt_family="ag repeat" FT /rpt_type=TANDEM FT /note="homology = 65.3%, counts = 36" FT repeat_region complement(18074607..18074889) FT /rpt_family="ALU" FT /note="88% identity: matches 578..862 of consensus" FT repeat_region 18074631..18074874 FT /rpt_family="L1" FT /note="86% identity: matches 185..424 of consensus" FT repeat_region complement(18074583..18074606) FT /note="CAA repeat" FT repeat_region complement(18074466..18074590) FT /rpt_family="agaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 76.8%, counts = 25" FT repeat_region complement(18074536..18074556) FT /note="AAGAG repeat" FT repeat_region complement(18074470..18074534) FT /note="AAGAA repeat" FT exon complement(18073121..18073259) FT /note="GENSCAN prediction, score = 5.85" FT exon complement(18072385..18072452) FT /note="MZEF prediction, score = 0.589" FT exon complement(18071756..18071768) FT /note="XPOUND prediction, score = 0.257" FT exon complement(18071155..18071173) FT /note="XPOUND prediction, score = 0.236" FT exon complement(18070845..18071000) FT /note="GENSCAN prediction, score = 9.09" FT exon complement(18070802..18070921) FT /note="XPOUND prediction, score = 0.324" FT repeat_region complement(18070466..18070476) FT /note="CT repeat" FT repeat_region complement(18069502..18069516) FT /note="AATAG repeat" FT repeat_region complement(18069403..18069423) FT /note="TGTA repeat" FT repeat_region 18068358..18068485 FT /rpt_family="MER2" FT /note="85% identity: matches 17..144 of consensus" FT repeat_region complement(18068275..18068346) FT /rpt_family="tttttg repeat" FT /rpt_type=TANDEM FT /note="homology = 69.4%, counts = 12" FT repeat_region 18066730..18067135 FT /rpt_family="L1" FT /note="95% identity: matches 39..446 of consensus" FT exon complement(18066289..18066326) FT /note="XPOUND prediction, score = 0.424" FT repeat_region complement(18065972..18066016) FT /rpt_type=INVERTED FT /note="IR8, 86% complementary to IR8' (123365..123409)" FT repeat_region complement(18065711..18065983) FT /rpt_family="L1" FT /note="86% identity: matches 161..424 of consensus" FT repeat_region 18065705..18065933 FT /rpt_family="ALU" FT /note="91% identity: matches 1119..1347 of consensus" FT exon 18065548..18065558 FT /note="XPOUND prediction, score = 0.317" FT repeat_region complement(18064952..18064996) FT /rpt_type=INVERTED FT /note="IR8', 86% complementary to IR8 (122345..122389)" FT repeat_region complement(18064865..18064884) FT /rpt_type=INVERTED FT /note="IR9, 95% complementary to IR9' (123566..123585)" FT repeat_region complement(18064776..18064795) FT /rpt_type=INVERTED FT /note="IR9', 95% complementary to IR9 (123477..123496)" FT exon complement(18063767..18063780) FT /note="XPOUND prediction, score = 0.206" FT exon 18063609..18063691 FT /note="XPOUND prediction, score = 0.283" FT repeat_region 18063263..18063337 FT /rpt_family="ALU" FT /note="88% identity: matches 363..437 of consensus" FT repeat_region 18063083..18063138 FT /rpt_family="ALU" FT /note="91% identity: matches 659..714 of consensus" FT exon complement(18060995..18061060) FT /note="MZEF prediction, score = 0.646" FT exon complement(18060654..18060663) FT /note="XPOUND prediction, score = 0.263" FT exon 18060482..18060494 FT /note="XPOUND prediction, score = 0.459" FT repeat_region complement(18060213..18060230) FT /rpt_type=INVERTED FT /note="IR10, 100% complementary to IR10' (128698..128715)" FT repeat_region complement(18059646..18059663) FT /rpt_type=INVERTED FT /note="IR10', 100% complementary to IR10 (128131..128148)" FT repeat_region complement(18058095..18058166) FT /rpt_family="tcat repeat" FT /rpt_type=TANDEM FT /note="homology = 75.0%, counts = 18" FT exon 18057703..18057706 FT /note="XPOUND prediction, score = 0.208" FT exon 18057613..18057690 FT /note="XPOUND prediction, score = 0.239" FT repeat_region complement(18056916..18056942) FT /rpt_type=INVERTED FT /note="IR11, 85% complementary to IR11' (132507..132533)" FT exon 18056726..18056745 FT /note="XPOUND prediction, score = 0.321" FT exon complement(18056446..18056571) FT /note="GENSCAN prediction, score = 1.86" FT repeat_region complement(18055828..18055854) FT /rpt_type=INVERTED FT /note="IR11', 85% complementary to IR11 (131419..131445)" FT exon 18055667..18055689 FT /note="XPOUND prediction, score = 0.456" FT exon complement(18055040..18055119) FT /note="MZEF prediction, score = 0.805" FT repeat_region complement(18054130..18054209) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 65.0%, counts = 40" FT repeat_region complement(18053340..18053353) FT /note="GA repeat" FT exon 18053170..18053197 FT /note="XPOUND prediction, score = 0.536" FT repeat_region complement(18052861..18052923) FT /rpt_type=INVERTED FT /note="IR12, 96% complementary to IR12' (136465..136526)" FT repeat_region complement(18052701..18052712) FT /note="ATG repeat" FT exon complement(18052343..18052447) FT /note="GENSCAN prediction, score = 0.19" FT exon complement(18052343..18052397) FT /note="MZEF prediction, score = 0.554" FT repeat_region complement(18051835..18051896) FT /rpt_type=INVERTED FT /note="IR12', 96% complementary to IR12 (135438..135500)" FT repeat_region complement(18051018..18051308) FT /rpt_type=INVERTED FT /note="IR13, 88% complementary to IR13' (138441..138731)" FT repeat_region complement(18051029..18051298) FT /rpt_family="L1" FT /note="89% identity: matches 245..515 of consensus" FT repeat_region 18051018..18051298 FT /rpt_family="ALU" FT /note="91% identity: matches 1..282 of consensus" FT repeat_region complement(18051224..18051235) FT /note="CCT repeat" FT exon complement(18049822..18049933) FT /note="MZEF prediction, score = 0.828" FT repeat_region complement(18049640..18049920) FT /rpt_family="ALU" FT /note="91% identity: matches 1..281 of consensus" FT repeat_region 18049640..18049920 FT /rpt_family="L1" FT /note="86% identity: matches 245..526 of consensus" FT repeat_region complement(18049630..18049920) FT /rpt_type=INVERTED FT /note="IR13', 88% complementary to IR13 (137053..137343)" FT repeat_region complement(18049161..18049208) FT /rpt_family="THE" FT /note="91% identity: matches 48..95 of consensus" FT exon complement(18048682..18048764) FT /note="XPOUND prediction, score = 0.284" FT exon 18048662..18048714 FT /note="MZEF prediction, score = 0.886" FT exon 18048326..18048410 FT /note="MZEF prediction, score = 0.503" FT repeat_region complement(18047613..18047628) FT /note="CACCC repeat" FT repeat_region 18047300..18047347 FT /rpt_family="MER20" FT /note="91% identity: matches 4..51 of consensus" FT exon complement(18044487..18044502) FT /note="XPOUND prediction, score = 0.338" FT repeat_region complement(18043521..18043550) FT /rpt_type=INVERTED FT /note="IR14, 83% complementary to IR14' (144859..144888)" FT repeat_region complement(18043473..18043502) FT /rpt_type=INVERTED FT /note="IR14', 83% complementary to IR14 (144811..144840)" FT exon 18043398..18043457 FT /note="MZEF prediction, score = 0.653" FT exon 18040469..18040488 FT /note="XPOUND prediction, score = 0.354" FT exon 18038994..18039068 FT /note="MZEF prediction, score = 0.774" FT exon complement(18038858..18038922) FT /note="MZEF prediction, score = 0.789" FT exon complement(18037759..18037828) FT /note="MZEF prediction, score = 0.758" FT exon 18035978..18036002 FT /note="XPOUND prediction, score = 0.269" FT exon complement(18034668..18034806) FT /note="MZEF prediction, score = 0.595" FT exon complement(18031633..18031873) FT /note="GENSCAN prediction, score = 3.70" FT repeat_region complement(18030746..18030836) FT /rpt_family="L1" FT /note="86% identity: matches 68..158 of consensus" FT repeat_region 18029291..18030550 FT /rpt_family="L1" FT /note="94% identity: matches 1180..2433 of consensus" FT exon 18030197..18030241 FT /note="XPOUND prediction, score = 0.411" FT exon 18029458..18029528 FT /note="XPOUND prediction, score = 0.297" FT repeat_region complement(18028546..18029281) FT /rpt_family="L1" FT /note="96% identity: matches 119..856 of consensus" FT exon complement(18028492..18029159) FT /note="GENSCAN prediction, score = 4.60" FT exon complement(18028843..18028994) FT /note="MZEF prediction, score = 0.551" FT repeat_region complement(18028389..18028473) FT /rpt_family="L1" FT /note="87% identity: matches 129..213 of consensus" FT repeat_region complement(18028066..18028130) FT /rpt_family="L1" FT /note="87% identity: matches 1019..1083 of consensus" FT misc_feature 18297630 FT /note="Clone_right_end: RP11-1A10" FT misc_feature 18341805 FT /note="Clone_left_end: RP11-570H19" FT misc_feature complement(18343805..18532051) FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon 18531751..18531802 FT /note="GRAIL, score = 51%, comment = good shadow" FT exon complement(18531681..18531781) FT /note="GRAIL, score = 72%, comment = good" FT exon 18531175..18531197 FT /note="XPOUND prediction, score = 0.228" FT exon complement(18530509..18530647) FT /note="MZEF prediction, score = 0.931" FT exon complement(18530509..18530623) FT /note="GENSCAN prediction, score = 6.12" FT /note="GRAIL, score = 76%, comment = excellent" FT exon 18530209..18530335 FT /note="MZEF prediction, score = 0.567" FT exon 18530031..18530050 FT /note="XPOUND prediction, score = 0.352" FT repeat_region complement(18529916..18529930) FT /note="CAAAA repeat" FT repeat_region complement(18528477..18528675) FT /rpt_family="L1" FT /note="86% identity: matches 1168..1366 of consensus" FT exon complement(18528406..18528652) FT /note="GENSCAN prediction, score = 4.60" FT /note="MZEF prediction, score = 0.778" FT exon complement(18528406..18528637) FT /note="GRAIL, score = 83%, comment = excellent" FT repeat_region complement(18528219..18528347) FT /rpt_family="L1" FT /note="89% identity: matches 584..712 of consensus" FT repeat_region complement(18528193..18528207) FT /note="TAAAA repeat" FT repeat_region complement(18527899..18528173) FT /rpt_family="ALU" FT /note="87% identity: matches 305..578 of consensus" FT repeat_region 18527895..18528161 FT /rpt_family="L1" FT /note="84% identity: matches 162..424 of consensus" FT repeat_region complement(18527862..18527873) FT /note="AT repeat" FT repeat_region complement(18523298..18526707) FT /rpt_family="L1" FT /note="93% identity: matches 1735..5150 of consensus" FT exon 18526622..18526634 FT /note="XPOUND prediction, score = 0.357" FT exon complement(18525601..18525791) FT /note="GRAIL, score = 77%, comment = excellent" FT exon complement(18524127..18525393) FT /note="GENSCAN prediction, score = 13.06" FT exon complement(18524793..18524943) FT /note="GRAIL, score = 73%, comment = good" FT exon 18524780..18524864 FT /note="GRAIL, score = 47%, comment = marginal shadow" FT repeat_region complement(18522457..18523283) FT /rpt_family="L1" FT /note="91% identity: matches 1602..2427 of consensus" FT exon 18522714..18522851 FT /note="GRAIL, score = 69%, comment = good shadow" FT repeat_region complement(18522487..18522510) FT /rpt_type=INVERTED FT /note="IR1, 87% complementary to IR1' (9782..9805)" FT repeat_region complement(18522438..18522454) FT /note="AATAA repeat" FT repeat_region 18522225..18522300 FT /rpt_family="L1" FT /note="87% identity: matches 623..701 of consensus" FT exon complement(18522232..18522282) FT /note="MZEF prediction, score = 0.766" FT repeat_region complement(18522247..18522270) FT /rpt_type=INVERTED FT /note="IR1', 87% complementary to IR1 (9542..9565)" FT exon 18522187..18522218 FT /note="XPOUND prediction, score = 0.433" FT exon complement(18522033..18522094) FT /note="GRAIL, score = 51%, comment = good" FT exon complement(18521873..18522012) FT /note="GRAIL, score = 81%, comment = excellent" FT exon 18521168..18521177 FT /note="XPOUND prediction, score = 0.259" FT exon 18520980..18521022 FT /note="XPOUND prediction, score = 0.253" FT exon complement(18519763..18519981) FT /note="GRAIL, score = 100%, comment = excellent" FT exon complement(18519763..18519943) FT /note="GENSCAN prediction, score = 11.19" FT repeat_region complement(18518748..18518922) FT /rpt_family="ALU" FT /note="88% identity: matches 229..404 of consensus" FT repeat_region 18518734..18518916 FT /rpt_family="L1" FT /note="84% identity: matches 170..353 of consensus" FT repeat_region complement(18518696..18518709) FT /note="AAAAG repeat" FT repeat_region complement(18518507..18518689) FT /rpt_family="L1" FT /note="82% identity: matches 743..925 of consensus" FT repeat_region complement(18518419..18518597) FT /rpt_family="L1" FT /note="86% identity: matches 253..432 of consensus" FT repeat_region complement(18518339..18518489) FT /rpt_family="L1" FT /note="82% identity: matches 477..627 of consensus" FT exon complement(18518195..18518353) FT /note="GRAIL, score = 52%, comment = good" FT repeat_region complement(18518154..18518203) FT /rpt_family="L1" FT /note="94% identity: matches 645..694 of consensus" FT repeat_region complement(18517958..18518033) FT /rpt_family="agaa repeat" FT /rpt_type=TANDEM FT /note="homology = 65.8%, counts = 19" FT repeat_region complement(18518018..18518032) FT /note="GAAG repeat" FT repeat_region complement(18517731..18517847) FT /rpt_family="L1" FT /note="100% identity: matches 5553..5669 of consensus" FT repeat_region complement(18517577..18517731) FT /rpt_family="L1" FT /note="98% identity: matches 5707..5861 of consensus" FT repeat_region complement(18517429..18517560) FT /rpt_family="L1" FT /note="96% identity: matches 523..654 of consensus" FT repeat_region complement(18517353..18517433) FT /rpt_family="ataaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 71.6%, counts = 9" FT repeat_region complement(18517401..18517428) FT /rpt_type=INVERTED FT /note="IR2, 85% complementary to IR2' (15939..15966)" FT repeat_region complement(18516224..18516269) FT /rpt_family="tc repeat" FT /rpt_type=TANDEM FT /note="homology = 82.6%, counts = 23" FT repeat_region complement(18516247..18516257) FT /note="TC repeat" FT repeat_region complement(18516086..18516113) FT /rpt_type=INVERTED FT /note="IR2', 85% complementary to IR2 (14624..14651)" FT exon complement(18515979..18516055) FT /note="GRAIL, score = 90%, comment = excellent" FT repeat_region complement(18516012..18516031) FT /note="AACTC repeat" FT exon 18515763..18515767 FT /note="XPOUND prediction, score = 0.206" FT exon 18515751..18515761 FT /note="XPOUND prediction, score = 0.211" FT exon 18515687..18515703 FT /note="XPOUND prediction, score = 0.226" FT repeat_region complement(18515372..18515624) FT /rpt_family="ALU" FT /note="83% identity: matches 9..259 of consensus" FT repeat_region 18515500..18515618 FT /rpt_family="L1" FT /note="84% identity: matches 464..582 of consensus" FT repeat_region 18515370..18515543 FT /rpt_family="L1" FT /note="80% identity: matches 180..353 of consensus" FT repeat_region complement(18515334..18515347) FT /note="AAAC repeat" FT repeat_region 18514362..18514622 FT /rpt_family="L1" FT /note="87% identity: matches 261..521 of consensus" FT repeat_region complement(18514373..18514615) FT /rpt_family="ALU" FT /note="92% identity: matches 337..578 of consensus" FT misc_feature complement(18514352..18514580) FT /note="CpG_island (%GC=59.8, o/e=0.84, #CpGs=16)" FT repeat_region complement(18514209..18514348) FT /rpt_family="aaata repeat" FT /rpt_type=TANDEM FT /note="homology = 61.4%, counts = 28" FT repeat_region complement(18512506..18512518) FT /note="TGAA repeat" FT exon complement(18512205..18512429) FT /note="GRAIL, score = 56%, comment = good" FT exon complement(18511316..18511358) FT /note="GRAIL, score = 53%, comment = good" FT exon complement(18510840..18510888) FT /note="MZEF prediction, score = 0.696" FT exon 18510559..18510620 FT /note="XPOUND prediction, score = 0.340" FT exon complement(18510480..18510601) FT /note="GRAIL, score = 63%, comment = good" FT repeat_region complement(18508901..18509188) FT /rpt_family="L1" FT /note="90% identity: matches 245..526 of consensus" FT repeat_region 18508900..18509188 FT /rpt_family="ALU" FT /note="98% identity: matches 412..700 of consensus" FT misc_feature complement(18508904..18509184) FT /note="CpG_island (%GC=62.6, o/e=0.83, #CpGs=24)" FT exon 18508978..18508999 FT /note="XPOUND prediction, score = 0.218" FT repeat_region complement(18507915..18508181) FT /rpt_family="L1" FT /note="83% identity: matches 161..424 of consensus" FT repeat_region 18507899..18508160 FT /rpt_family="ALU" FT /note="85% identity: matches 455..715 of consensus" FT exon complement(18507002..18507046) FT /note="GRAIL, score = 56%, comment = good" FT exon complement(18506131..18506316) FT /note="GRAIL, score = 46%, comment = marginal" FT exon complement(18506131..18506298) FT /note="MZEF prediction, score = 0.742" FT exon complement(18505115..18505165) FT /note="MZEF prediction, score = 0.993" FT exon complement(18504907..18505042) FT /note="GRAIL, score = 71%, comment = good" FT exon 18504835..18504954 FT /note="XPOUND prediction, score = 0.865" FT exon 18504827..18504954 FT /note="GRAIL, score = 98%, comment = excellent shadow" FT /note="MZEF prediction, score = 0.589" FT repeat_region complement(18503979..18504004) FT /note="CA repeat" FT repeat_region complement(18503969..18504004) FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 88.9%, counts = 18" FT repeat_region complement(18503420..18503439) FT /note="TA repeat" FT repeat_region complement(18502893..18502942) FT /rpt_family="tattaatatt repeat" FT /rpt_type=TANDEM FT /note="homology = 80.0%, counts = 5" FT exon 18502708..18502781 FT /note="XPOUND prediction, score = 0.653" FT exon 18502704..18502781 FT /note="GRAIL, score = 68%, comment = good shadow" FT repeat_region complement(18502171..18502186) FT /note="CAAAA repeat" FT repeat_region 18501390..18501484 FT /rpt_family="ALU" FT /note="83% identity: matches 646..747 of consensus" FT repeat_region 18501241..18501419 FT /rpt_family="ALU" FT /note="83% identity: matches 14..192 of consensus" FT repeat_region complement(18501239..18501359) FT /rpt_family="L1" FT /note="86% identity: matches 464..584 of consensus" FT exon complement(18500893..18500966) FT /note="GRAIL, score = 78%, comment = excellent" FT exon complement(18500411..18500495) FT /note="XPOUND prediction, score = 0.301" FT exon complement(18500201..18500467) FT /note="GENSCAN prediction, score = 1.01" FT exon complement(18500201..18500214) FT /note="XPOUND prediction, score = 0.209" FT exon complement(18499710..18499743) FT /note="XPOUND prediction, score = 0.312" FT exon complement(18499380..18499679) FT /note="GRAIL, score = 59%, comment = good" FT exon complement(18498826..18499002) FT /note="GENSCAN prediction, score = 7.89" FT exon complement(18498826..18498957) FT /note="MZEF prediction, score = 0.527" FT repeat_region 18498502..18498610 FT /rpt_family="L1" FT /note="83% identity: matches 463..571 of consensus" FT repeat_region complement(18498374..18498605) FT /rpt_family="ALU" FT /note="84% identity: matches 28..257 of consensus" FT repeat_region 18498374..18498480 FT /rpt_family="L1" FT /note="84% identity: matches 182..288 of consensus" FT exon complement(18497907..18498009) FT /note="MZEF prediction, score = 0.627" FT repeat_region complement(18495748..18495760) FT /note="CA repeat" FT repeat_region complement(18494920..18494964) FT /rpt_type=INVERTED FT /note="IR3, 77% complementary to IR3' (38608..38653)" FT repeat_region complement(18494087..18494338) FT /rpt_family="L1" FT /note="81% identity: matches 176..424 of consensus" FT repeat_region 18494082..18494334 FT /rpt_family="ALU" FT /note="87% identity: matches 487..742 of consensus" FT exon complement(18493876..18493972) FT /note="GRAIL, score = 76%, comment = excellent" FT exon complement(18493412..18493559) FT /note="GENSCAN prediction, score = 2.49" FT exon complement(18493412..18493485) FT /note="GRAIL, score = 73%, comment = good" FT repeat_region complement(18493399..18493444) FT /rpt_type=INVERTED FT /note="IR3', 77% complementary to IR3 (37088..37132)" FT exon complement(18490791..18490852) FT /note="XPOUND prediction, score = 0.491" FT exon 18490431..18490516 FT /note="MZEF prediction, score = 0.711" FT exon complement(18490002..18490047) FT /note="XPOUND prediction, score = 0.719" FT exon 18488989..18489127 FT /note="MZEF prediction, score = 0.741" FT exon complement(18488789..18488807) FT /note="XPOUND prediction, score = 0.203" FT exon complement(18488766..18488778) FT /note="XPOUND prediction, score = 0.250" FT exon complement(18488227..18488245) FT /note="XPOUND prediction, score = 0.387" FT exon complement(18486868..18487013) FT /note="GENSCAN prediction, score = 6.28" FT exon complement(18486800..18486973) FT /note="MZEF prediction, score = 0.618" FT repeat_region 18486577..18486650 FT /rpt_family="ALU" FT /note="89% identity: matches 943..1016 of consensus" FT repeat_region 18486452..18486610 FT /rpt_family="ALU" FT /note="82% identity: matches 902..1066 of consensus" FT repeat_region complement(18486451..18486537) FT /rpt_family="L1" FT /note="83% identity: matches 479..565 of consensus" FT repeat_region complement(18485925..18485936) FT /note="CTG repeat" FT exon complement(18485739..18485852) FT /note="GENSCAN prediction, score = 1.99" FT /note="GRAIL, score = 48%, comment = marginal shadow" FT exon 18485593..18485710 FT /note="GRAIL, score = 66%, comment = good" FT /note="MZEF prediction, score = 0.951" FT exon 18484133..18484213 FT /note="MZEF prediction, score = 0.719" FT exon 18484093..18484213 FT /note="GRAIL, score = 85%, comment = excellent" FT repeat_region complement(18483836..18483854) FT /note="TTTTG repeat" FT repeat_region 18483556..18483824 FT /rpt_family="ALU" FT /note="92% identity: matches 315..583 of consensus" FT repeat_region complement(18483549..18483824) FT /rpt_family="L1" FT /note="88% identity: matches 245..521 of consensus" FT exon complement(18483680..18483823) FT /note="MZEF prediction, score = 0.955" FT exon 18482774..18482816 FT /note="GRAIL, score = 49%, comment = marginal" FT exon complement(18482640..18482659) FT /note="XPOUND prediction, score = 0.230" FT repeat_region 18481284..18481433 FT /rpt_family="ALU" FT /note="91% identity: matches 398..547 of consensus" FT repeat_region complement(18481260..18481393) FT /rpt_family="L1" FT /note="89% identity: matches 464..597 of consensus" FT exon 18481078..18481134 FT /note="GRAIL, score = 79%, comment = excellent" FT exon 18479898..18479929 FT /note="XPOUND prediction, score = 0.519" FT exon 18479211..18479324 FT /note="GRAIL, score = 73%, comment = good" FT exon 18478369..18478465 FT /note="GRAIL, score = 51%, comment = good" FT exon complement(18476835..18476903) FT /note="GRAIL, score = 77%, comment = excellent" FT exon 18474692..18474753 FT /note="XPOUND prediction, score = 0.402" FT repeat_region complement(18474353..18474390) FT /note="AC repeat" FT repeat_region complement(18474335..18474390) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 82.1%, counts = 28" FT exon 18474189..18474335 FT /note="XPOUND prediction, score = 0.612" FT exon complement(18474086..18474309) FT /note="GRAIL, score = 45%, comment = marginal" FT exon 18474231..18474293 FT /note="GENSCAN prediction, score = 7.41" FT repeat_region complement(18474065..18474087) FT /note="GGGT repeat" FT exon complement(18473859..18473962) FT /note="XPOUND prediction, score = 0.335" FT exon 18472960..18473134 FT /note="MZEF prediction, score = 0.877" FT exon complement(18473013..18473041) FT /note="XPOUND prediction, score = 0.321" FT exon 18471659..18471748 FT /note="GRAIL, score = 53%, comment = good shadow" FT exon complement(18471004..18471048) FT /note="XPOUND prediction, score = 0.294" FT exon 18470880..18471012 FT /note="XPOUND prediction, score = 0.402" FT repeat_region complement(18470834..18470845) FT /note="AG repeat" FT exon complement(18469483..18469692) FT /note="MZEF prediction, score = 0.554" FT exon complement(18469502..18469604) FT /note="GRAIL, score = 52%, comment = good shadow" FT exon 18468417..18468627 FT /note="GRAIL, score = 52%, comment = good" FT exon complement(18468532..18468586) FT /note="GRAIL, score = 57%, comment = good shadow" FT exon complement(18468525..18468586) FT /note="MZEF prediction, score = 0.701" FT exon 18468417..18468468 FT /note="MZEF prediction, score = 0.617" FT repeat_region complement(18468323..18468339) FT /note="CAAAA repeat" FT exon 18468215..18468270 FT /note="XPOUND prediction, score = 0.514" FT repeat_region complement(18466913..18466926) FT /note="AAATG repeat" FT repeat_region complement(18465781..18466037) FT /rpt_family="ALU" FT /note="84% identity: matches 10..264 of consensus" FT repeat_region 18465766..18466037 FT /rpt_family="L1" FT /note="80% identity: matches 246..515 of consensus" FT repeat_region complement(18465735..18465763) FT /note="AAAAC repeat" FT repeat_region complement(18465729..18465763) FT /rpt_family="aaaac repeat" FT /rpt_type=TANDEM FT /note="homology = 91.4%, counts = 7" FT repeat_region complement(18463805..18463934) FT /rpt_family="L1" FT /note="83% identity: matches 308..435 of consensus" FT repeat_region complement(18463637..18463717) FT /rpt_family="L1" FT /note="88% identity: matches 72..152 of consensus" FT exon 18463035..18463048 FT /note="XPOUND prediction, score = 0.233" FT repeat_region complement(18462935..18462990) FT /rpt_family="tttttta repeat" FT /rpt_type=TANDEM FT /note="homology = 82.1%, counts = 8" FT repeat_region complement(18462959..18462972) FT /note="TTTTA repeat" FT repeat_region complement(18462838..18462936) FT /rpt_family="L1" FT /note="89% identity: matches 161..259 of consensus" FT repeat_region 18462794..18462936 FT /rpt_family="ALU" FT /note="90% identity: matches 995..1137 of consensus" FT repeat_region complement(18462682..18462774) FT /rpt_family="L1" FT /note="83% identity: matches 477..569 of consensus" FT repeat_region 18462655..18462774 FT /rpt_family="ALU" FT /note="85% identity: matches 1..120 of consensus" FT repeat_region 18462322..18462358 FT /rpt_family="MIR" FT /note="97% identity: matches 154..190 of consensus" FT repeat_region complement(18462322..18462358) FT /rpt_family="MIR2" FT /note="97% identity: matches 86..122 of consensus" FT exon 18460638..18460659 FT /note="XPOUND prediction, score = 0.703" FT repeat_region complement(18457540..18457623) FT /rpt_family="ALU" FT /note="85% identity: matches 9..92 of consensus" FT repeat_region complement(18457370..18457451) FT /rpt_family="ALU" FT /note="89% identity: matches 179..260 of consensus" FT repeat_region complement(18456962..18456974) FT /note="AATG repeat" FT exon 18456500..18456533 FT /note="XPOUND prediction, score = 0.796" FT exon complement(18456033..18456057) FT /note="XPOUND prediction, score = 0.741" FT repeat_region complement(18455013..18455025) FT /note="CACC repeat" FT exon complement(18454519..18454559) FT /note="XPOUND prediction, score = 0.342" FT exon 18453939..18454029 FT /note="MZEF prediction, score = 0.707" FT exon complement(18453157..18453334) FT /note="GENSCAN prediction, score = 4.97" FT exon complement(18453184..18453200) FT /note="XPOUND prediction, score = 0.346" FT exon complement(18453109..18453149) FT /note="XPOUND prediction, score = 0.484" FT exon complement(18452937..18453007) FT /note="XPOUND prediction, score = 0.295" FT repeat_region 18451949..18452196 FT /rpt_family="L1" FT /note="84% identity: matches 183..424 of consensus" FT repeat_region complement(18451918..18452190) FT /rpt_family="ALU" FT /note="90% identity: matches 145..415 of consensus" FT exon complement(18451649..18451732) FT /note="MZEF prediction, score = 0.688" FT exon complement(18451650..18451693) FT /note="GRAIL, score = 74%, comment = good shadow" FT exon complement(18451649..18451685) FT /note="XPOUND prediction, score = 0.283" FT exon complement(18450698..18450732) FT /note="MZEF prediction, score = 0.568" FT exon complement(18450698..18450710) FT /note="XPOUND prediction, score = 0.251" FT repeat_region complement(18450586..18450639) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 72.2%, counts = 27" FT repeat_region complement(18450589..18450614) FT /rpt_type=INVERTED FT /note="IR4, 88% complementary to IR4' (81469..81494)" FT repeat_region complement(18450559..18450584) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 92.3%, counts = 13" FT repeat_region complement(18450559..18450584) FT /note="AT repeat" FT repeat_region complement(18450558..18450583) FT /rpt_type=INVERTED FT /note="IR4', 88% complementary to IR4 (81438..81463)" FT repeat_region complement(18448744..18448776) FT /rpt_type=INVERTED FT /note="IR5, 87% complementary to IR5' (84675..84708)" FT exon 18448143..18448328 FT /note="GRAIL, score = 92%, comment = excellent" FT repeat_region complement(18448270..18448282) FT /note="CTGG repeat" FT repeat_region complement(18448026..18448048) FT /note="AG repeat" FT repeat_region complement(18448011..18448048) FT /rpt_family="ag repeat" FT /rpt_type=TANDEM FT /note="homology = 92.1%, counts = 19" FT exon complement(18447741..18447753) FT /note="XPOUND prediction, score = 0.230" FT repeat_region complement(18447467..18447481) FT /note="CTCC repeat" FT exon complement(18447278..18447456) FT /note="GENSCAN prediction, score = 1.27" FT /note="GRAIL, score = 59%, comment = good shadow" FT repeat_region complement(18447344..18447377) FT /rpt_type=INVERTED FT /note="IR5', 87% complementary to IR5 (83276..83308)" FT exon complement(18445122..18445219) FT /note="MZEF prediction, score = 0.959" FT exon complement(18444712..18444810) FT /note="MZEF prediction, score = 0.504" FT exon 18443038..18443065 FT /note="XPOUND prediction, score = 0.231" FT exon 18442715..18442832 FT /note="XPOUND prediction, score = 0.342" FT exon complement(18442680..18442782) FT /note="GRAIL, score = 84%, comment = excellent" FT repeat_region complement(18441925..18441937) FT /note="ATT repeat" FT exon 18441367..18441415 FT /note="MZEF prediction, score = 0.935" FT repeat_region 18440966..18441055 FT /rpt_family="L1" FT /note="85% identity: matches 69..157 of consensus" FT exon complement(18440805..18440848) FT /note="MZEF prediction, score = 0.707" FT repeat_region complement(18440601..18440621) FT /note="AT repeat" FT repeat_region complement(18439385..18439661) FT /rpt_family="ALU" FT /note="89% identity: matches 2..280 of consensus" FT repeat_region 18439385..18439661 FT /rpt_family="L1" FT /note="86% identity: matches 247..525 of consensus" FT repeat_region complement(18439371..18439384) FT /note="CAAAA repeat" FT exon complement(18439100..18439118) FT /note="XPOUND prediction, score = 0.221" FT exon 18439089..18439107 FT /note="XPOUND prediction, score = 0.207" FT exon 18438394..18438985 FT /note="GENSCAN prediction, score = 18.51" FT misc_feature complement(18438557..18438802) FT /note="CpG_island (%GC=64.2, o/e=0.65, #CpGs=20)" FT exon complement(18438752..18438776) FT /note="XPOUND prediction, score = 0.251" FT exon 18438633..18438766 FT /note="XPOUND prediction, score = 0.458" FT exon complement(18438645..18438724) FT /note="XPOUND prediction, score = 0.252" FT exon 18437918..18438020 FT /note="XPOUND prediction, score = 0.584" FT exon complement(18436487..18436505) FT /note="XPOUND prediction, score = 0.384" FT repeat_region complement(18435806..18435973) FT /rpt_family="THE" FT /note="82% identity: matches 1..169 of consensus" FT exon 18435723..18435912 FT /note="GENSCAN prediction, score = 7.92" FT exon 18435712..18435912 FT /note="GRAIL, score = 68%, comment = good" FT repeat_region complement(18435710..18435867) FT /rpt_family="THE" FT /note="89% identity: matches 110..268 of consensus" FT exon 18435712..18435765 FT /note="XPOUND prediction, score = 0.376" FT exon complement(18435719..18435745) FT /note="XPOUND prediction, score = 0.212" FT repeat_region complement(18435660..18435706) FT /rpt_family="THE" FT /note="91% identity: matches 299..345 of consensus" FT repeat_region complement(18434507..18434582) FT /rpt_family="ttcaacattttcttttctc repeat" FT /rpt_type=TANDEM FT /note="homology = 77.6%, counts = 4" FT repeat_region complement(18434524..18434537) FT /note="TTTTC repeat" FT exon 18434210..18434284 FT /note="MZEF prediction, score = 0.662" FT exon complement(18430670..18430739) FT /note="MZEF prediction, score = 0.874" FT exon complement(18430185..18430195) FT /note="XPOUND prediction, score = 0.207" FT repeat_region complement(18429806..18430087) FT /rpt_family="ALU" FT /note="87% identity: matches 1..283 of consensus" FT repeat_region 18429806..18430073 FT /rpt_family="L1" FT /note="87% identity: matches 161..424 of consensus" FT repeat_region complement(18429774..18429803) FT /rpt_family="aaaaac repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 5" FT exon complement(18429380..18429525) FT /note="MZEF prediction, score = 0.950" FT repeat_region complement(18429108..18429165) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 70.7%, counts = 29" FT repeat_region 18428467..18428531 FT /rpt_family="ALU" FT /note="87% identity: matches 132..196 of consensus" FT repeat_region complement(18428445..18428463) FT /note="TTTTC repeat" FT exon 18427782..18427908 FT /note="MZEF prediction, score = 0.715" FT exon complement(18426237..18426277) FT /note="GRAIL, score = 55%, comment = good" FT repeat_region 18425717..18425831 FT /rpt_family="ALU" FT /note="83% identity: matches 146..260 of consensus" FT repeat_region complement(18425717..18425758) FT /rpt_family="L1" FT /note="92% identity: matches 748..789 of consensus" FT repeat_region complement(18425130..18425173) FT /rpt_family="ag repeat" FT /rpt_type=TANDEM FT /note="homology = 79.5%, counts = 22" FT repeat_region complement(18425129..18425144) FT /note="GA repeat" FT exon complement(18424904..18425007) FT /note="MZEF prediction, score = 0.665" FT exon complement(18424674..18424714) FT /note="XPOUND prediction, score = 0.211" FT exon complement(18422976..18423124) FT /note="GRAIL, score = 57%, comment = good" FT exon complement(18422664..18422846) FT /note="MZEF prediction, score = 0.571" FT exon complement(18422667..18422825) FT /note="GRAIL, score = 51%, comment = good" FT exon 18422535..18422645 FT /note="GRAIL, score = 72%, comment = good shadow" FT exon complement(18422177..18422642) FT /note="GRAIL, score = 52%, comment = good" FT exon complement(18422279..18422320) FT /note="XPOUND prediction, score = 0.302" FT repeat_region complement(18422181..18422197) FT /note="TG repeat" FT exon complement(18421849..18421954) FT /note="MZEF prediction, score = 0.596" FT repeat_region complement(18421728..18421912) FT /rpt_type=INVERTED FT /note="IR6, 97% complementary to IR6' (110679..110863)" FT exon 18421606..18421693 FT /note="GENSCAN prediction, score = 3.15" FT exon 18421550..18421645 FT /note="GRAIL, score = 49%, comment = marginal shadow" FT repeat_region complement(18421189..18421373) FT /rpt_type=INVERTED FT /note="IR6', 97% complementary to IR6 (110140..110324)" FT exon 18421013..18421102 FT /note="GRAIL, score = 66%, comment = good shadow" FT exon complement(18420593..18420656) FT /note="GRAIL, score = 89%, comment = excellent" FT exon complement(18420593..18420601) FT /note="XPOUND prediction, score = 0.303" FT repeat_region complement(18420148..18420191) FT /rpt_type=INVERTED FT /note="IR7, 90% complementary to IR7' (111951..111995)" FT repeat_region complement(18420057..18420101) FT /rpt_type=INVERTED FT /note="IR7', 90% complementary to IR7 (111861..111904)" FT repeat_region complement(18419752..18420016) FT /rpt_family="ALU" FT /note="89% identity: matches 8..274 of consensus" FT repeat_region 18419749..18420011 FT /rpt_family="L1" FT /note="86% identity: matches 161..424 of consensus" FT exon complement(18419582..18419598) FT /note="XPOUND prediction, score = 0.613" FT exon complement(18419419..18419454) FT /note="MZEF prediction, score = 0.972" FT exon complement(18419419..18419431) FT /note="XPOUND prediction, score = 0.245" FT repeat_region complement(18417324..18417527) FT /rpt_family="ctttttttttctttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 64.2%, counts = 12" FT repeat_region 18416558..18416593 FT /rpt_family="L1" FT /note="97% identity: matches 233..268 of consensus" FT exon 18416234..18416284 FT /note="MZEF prediction, score = 0.691" FT exon 18416021..18416139 FT /note="GRAIL, score = 90%, comment = excellent" FT exon complement(18414433..18414442) FT /note="XPOUND prediction, score = 0.233" FT exon complement(18413872..18413887) FT /note="XPOUND prediction, score = 0.281" FT exon complement(18413840..18413848) FT /note="XPOUND prediction, score = 0.205" FT repeat_region 18413238..18413441 FT /rpt_family="L1" FT /note="86% identity: matches 218..417 of consensus" FT repeat_region complement(18413238..18413435) FT /rpt_family="ALU" FT /note="90% identity: matches 607..805 of consensus" FT exon 18413179..18413257 FT /note="XPOUND prediction, score = 0.453" FT repeat_region complement(18413200..18413247) FT /rpt_family="aagattgcagcaagcc repeat" FT /rpt_type=TANDEM FT /note="homology = 87.5%, counts = 3" FT repeat_region complement(18413164..18413219) FT /rpt_family="ALU" FT /note="89% identity: matches 230..285 of consensus" FT repeat_region complement(18412965..18412975) FT /note="AC repeat" FT exon 18412597..18412610 FT /note="XPOUND prediction, score = 0.232" FT exon 18412141..18412321 FT /note="GENSCAN prediction, score = 1.30" FT repeat_region 18411379..18411482 FT /rpt_family="L1" FT /note="85% identity: matches 325..424 of consensus" FT repeat_region complement(18411387..18411480) FT /rpt_family="ALU" FT /note="89% identity: matches 14..107 of consensus" FT exon 18411240..18411321 FT /note="GRAIL, score = 75%, comment = excellent" FT repeat_region complement(18411213..18411274) FT /rpt_family="ALU" FT /note="90% identity: matches 963..1025 of consensus" FT repeat_region complement(18411177..18411250) FT /rpt_type=INVERTED FT /note="IR8, 78% complementary to IR8' (122635..122709)" FT repeat_region complement(18411161..18411212) FT /rpt_family="taaa repeat" FT /rpt_type=TANDEM FT /note="homology = 84.6%, counts = 13" FT repeat_region complement(18411161..18411209) FT /note="AAAT repeat" FT repeat_region 18411038..18411159 FT /rpt_family="L1" FT /note="85% identity: matches 473..596 of consensus" FT repeat_region complement(18411054..18411151) FT /rpt_family="ALU" FT /note="90% identity: matches 421..518 of consensus" FT repeat_region 18410881..18411005 FT /rpt_family="L1" FT /note="83% identity: matches 268..392 of consensus" FT repeat_region complement(18410860..18411005) FT /rpt_family="ALU" FT /note="87% identity: matches 138..284 of consensus" FT repeat_region complement(18410834..18410846) FT /note="AAG repeat" FT repeat_region complement(18410395..18410768) FT /rpt_family="L1" FT /note="85% identity: matches 187..561 of consensus" FT exon complement(18410456..18410531) FT /note="GENSCAN prediction, score = 5.70" FT exon complement(18410373..18410531) FT /note="GRAIL, score = 50%, comment = good" FT repeat_region complement(18410209..18410309) FT /rpt_family="L1" FT /note="87% identity: matches 244..344 of consensus" FT exon 18409944..18409953 FT /note="XPOUND prediction, score = 0.229" FT repeat_region complement(18409827..18409880) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 70.4%, counts = 27" FT repeat_region complement(18409763..18409776) FT /note="ATGT repeat" FT repeat_region complement(18409711..18409724) FT /note="ATAC repeat" FT exon 18409660..18409671 FT /note="XPOUND prediction, score = 0.220" FT repeat_region complement(18409381..18409424) FT /rpt_family="ttttttttttc repeat" FT /rpt_type=TANDEM FT /note="homology = 90.9%, counts = 4" FT repeat_region complement(18409405..18409418) FT /note="TTTTC repeat" FT repeat_region complement(18409343..18409417) FT /rpt_type=INVERTED FT /note="IR8', 78% complementary to IR8 (120802..120875)" FT repeat_region 18409104..18409381 FT /rpt_family="ALU" FT /note="88% identity: matches 139..417 of consensus" FT repeat_region complement(18409167..18409363) FT /rpt_family="L1" FT /note="81% identity: matches 178..374 of consensus" FT repeat_region complement(18409098..18409231) FT /rpt_family="L1" FT /note="85% identity: matches 465..598 of consensus" FT exon complement(18408510..18408617) FT /note="MZEF prediction, score = 0.506" FT repeat_region complement(18408185..18408460) FT /rpt_family="L1" FT /note="82% identity: matches 253..526 of consensus" FT repeat_region 18408196..18408446 FT /rpt_family="ALU" FT /note="86% identity: matches 146..394 of consensus" FT repeat_region complement(18408196..18408405) FT /rpt_type=INVERTED FT /note="IR9, 79% complementary to IR9' (125435..125644)" FT exon 18408255..18408285 FT /note="XPOUND prediction, score = 0.618" FT repeat_region complement(18406893..18406904) FT /note="TAT repeat" FT repeat_region 18406566..18406628 FT /rpt_family="THR" FT /note="87% identity: matches 38..100 of consensus" FT repeat_region complement(18406348..18406623) FT /rpt_family="ALU" FT /note="84% identity: matches 861..1134 of consensus" FT repeat_region complement(18406408..18406617) FT /rpt_type=INVERTED FT /note="IR9', 79% complementary to IR9 (123647..123856)" FT repeat_region 18406501..18406574 FT /rpt_family="L1" FT /note="85% identity: matches 469..542 of consensus" FT repeat_region 18406348..18406473 FT /rpt_family="L1" FT /note="89% identity: matches 164..289 of consensus" FT repeat_region complement(18406288..18406341) FT /note="AAAAG repeat" FT repeat_region complement(18406287..18406341) FT /rpt_family="aaaag repeat" FT /rpt_type=TANDEM FT /note="homology = 98.2%, counts = 11" FT exon 18405481..18405537 FT /note="MZEF prediction, score = 0.911" FT /note="XPOUND prediction, score = 0.576" FT exon 18405348..18405402 FT /note="XPOUND prediction, score = 0.346" FT exon complement(18405066..18405160) FT /note="MZEF prediction, score = 0.932" FT exon complement(18403729..18403800) FT /note="GRAIL, score = 55%, comment = good" FT repeat_region 18403200..18403461 FT /rpt_family="L1" FT /note="84% identity: matches 161..418 of consensus" FT repeat_region complement(18403392..18403460) FT /rpt_family="ALU" FT /note="91% identity: matches 347..415 of consensus" FT repeat_region complement(18403222..18403426) FT /rpt_family="ALU" FT /note="90% identity: matches 46..250 of consensus" FT repeat_region complement(18403123..18403199) FT /rpt_family="aaaaata repeat" FT /rpt_type=TANDEM FT /note="homology = 68.8%, counts = 11" FT repeat_region complement(18403176..18403196) FT /note="AAAAT repeat" FT exon 18402358..18402371 FT /note="XPOUND prediction, score = 0.231" FT exon 18402083..18402099 FT /note="XPOUND prediction, score = 0.231" FT exon complement(18401869..18401910) FT /note="MZEF prediction, score = 0.686" FT repeat_region 18400158..18400191 FT /rpt_family="L1" FT /note="97% identity: matches 16..49 of consensus" FT repeat_region complement(18400175..18400187) FT /note="TTA repeat" FT repeat_region complement(18399939..18399955) FT /note="TTG repeat" FT exon 18399938..18399955 FT /note="XPOUND prediction, score = 0.209" FT repeat_region complement(18399923..18399955) FT /rpt_family="ttg repeat" FT /rpt_type=TANDEM FT /note="homology = 87.9%, counts = 11" FT repeat_region complement(18399370..18399643) FT /rpt_family="ALU" FT /note="82% identity: matches 6..268 of consensus" FT repeat_region 18399556..18399637 FT /rpt_family="L1" FT /note="87% identity: matches 504..585 of consensus" FT repeat_region 18399363..18399482 FT /rpt_family="L1" FT /note="87% identity: matches 168..285 of consensus" FT repeat_region complement(18399276..18399355) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 80.0%, counts = 40" FT repeat_region complement(18399303..18399329) FT /rpt_type=INVERTED FT /note="IR10, 96% complementary to IR10' (132752..132778)" FT repeat_region complement(18399279..18399327) FT /note="TA repeat" FT repeat_region complement(18399274..18399300) FT /rpt_type=INVERTED FT /note="IR10', 96% complementary to IR10 (132723..132749)" FT exon 18399100..18399125 FT /note="XPOUND prediction, score = 0.466" FT repeat_region 18396815..18396863 FT /rpt_family="ALU" FT /note="91% identity: matches 650..698 of consensus" FT repeat_region complement(18396436..18396605) FT /rpt_family="attatttatattaatat repeat" FT /rpt_type=TANDEM FT /note="homology = 64.7%, counts = 10" FT repeat_region complement(18396547..18396604) FT /rpt_type=INVERTED FT /note="IR11, 78% complementary to IR11' (135571..135628)" FT repeat_region complement(18396424..18396481) FT /rpt_type=INVERTED FT /note="IR11', 78% complementary to IR11 (135448..135505)" FT exon 18396202..18396256 FT /note="XPOUND prediction, score = 0.560" FT exon complement(18395957..18396057) FT /note="MZEF prediction, score = 0.721" FT repeat_region complement(18394490..18394535) FT /rpt_family="tc repeat" FT /rpt_type=TANDEM FT /note="homology = 73.9%, counts = 23" FT repeat_region complement(18394489..18394499) FT /note="TC repeat" FT exon 18394010..18394025 FT /note="XPOUND prediction, score = 0.306" FT exon 18393775..18393881 FT /note="GRAIL, score = 52%, comment = good" FT exon 18392900..18392932 FT /note="XPOUND prediction, score = 0.389" FT repeat_region 18391841..18392121 FT /rpt_family="L1" FT /note="88% identity: matches 245..526 of consensus" FT repeat_region complement(18391841..18392106) FT /rpt_family="ALU" FT /note="92% identity: matches 318..583 of consensus" FT repeat_region complement(18391802..18391840) FT /rpt_family="aaaaagaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 92.3%, counts = 3" FT repeat_region complement(18391804..18391838) FT /rpt_type=INVERTED FT /note="IR12, 80% complementary to IR12' (141238..141272)" FT repeat_region complement(18391806..18391825) FT /note="AAAG repeat" FT repeat_region complement(18391769..18391782) FT /note="AAC repeat" FT repeat_region complement(18391469..18391555) FT /rpt_family="ALU" FT /note="87% identity: matches 353..439 of consensus" FT exon 18390979..18391060 FT /note="GRAIL, score = 75%, comment = excellent" FT repeat_region complement(18390782..18390816) FT /rpt_family="tgttt repeat" FT /rpt_type=TANDEM FT /note="homology = 88.6%, counts = 7" FT repeat_region complement(18390780..18390814) FT /rpt_type=INVERTED FT /note="IR12', 80% complementary to IR12 (140214..140248)" FT repeat_region complement(18390791..18390809) FT /note="TTTTG repeat" FT exon complement(18390263..18390373) FT /note="GRAIL, score = 62%, comment = good shadow" FT repeat_region complement(18388773..18389041) FT /rpt_family="ALU" FT /note="88% identity: matches 11..278 of consensus" FT repeat_region 18388773..18389038 FT /rpt_family="L1" FT /note="86% identity: matches 161..424 of consensus" FT repeat_region complement(18388721..18388740) FT /note="AAC repeat" FT repeat_region complement(18388594..18388688) FT /rpt_family="agaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 64.2%, counts = 19" FT exon complement(18388471..18388575) FT /note="MZEF prediction, score = 0.557" FT repeat_region complement(18388295..18388562) FT /rpt_family="ALU" FT /note="81% identity: matches 10..274 of consensus" FT repeat_region 18388470..18388560 FT /rpt_family="L1" FT /note="84% identity: matches 495..585 of consensus" FT repeat_region complement(18388266..18388279) FT /note="AAAAC repeat" FT repeat_region complement(18388148..18388279) FT /rpt_family="aaaaaataaata repeat" FT /rpt_type=TANDEM FT /note="homology = 66.7%, counts = 11" FT exon 18386900..18387028 FT /note="GRAIL, score = 66%, comment = good" FT exon 18385089..18385347 FT /note="GRAIL, score = 54%, comment = good" FT repeat_region complement(18384351..18384441) FT /rpt_family="THE" FT /note="85% identity: matches 4..94 of consensus" FT exon complement(18383833..18384005) FT /note="GENSCAN prediction, score = 2.86" FT exon 18383463..18383511 FT /note="XPOUND prediction, score = 0.398" FT exon 18383266..18383306 FT /note="GRAIL, score = 82%, comment = excellent" FT exon 18382887..18382896 FT /note="XPOUND prediction, score = 0.200" FT exon 18382530..18382644 FT /note="GRAIL, score = 66%, comment = good" FT exon 18381729..18381840 FT /note="GRAIL, score = 47%, comment = marginal" FT exon complement(18381501..18381552) FT /note="GRAIL, score = 45%, comment = marginal shadow" FT exon 18380821..18380964 FT /note="GRAIL, score = 75%, comment = excellent" FT exon complement(18380541..18380574) FT /note="GRAIL, score = 89%, comment = excellent shadow" FT exon complement(18379794..18379909) FT /note="GRAIL, score = 44%, comment = marginal shadow" FT exon 18379189..18379236 FT /note="XPOUND prediction, score = 0.250" FT repeat_region complement(18378815..18378836) FT /note="AAAC repeat" FT exon complement(18378640..18378702) FT /note="MZEF prediction, score = 0.585" FT exon complement(18378640..18378685) FT /note="GRAIL, score = 81%, comment = excellent" FT exon complement(18378018..18378094) FT /note="GRAIL, score = 50%, comment = good" FT exon complement(18377944..18378094) FT /note="GENSCAN prediction, score = 4.10" FT exon 18377976..18378041 FT /note="XPOUND prediction, score = 0.463" FT repeat_region complement(18377586..18377855) FT /rpt_family="ALU" FT /note="90% identity: matches 10..278 of consensus" FT repeat_region complement(18377574..18377855) FT /rpt_type=INVERTED FT /note="IR13, 85% complementary to IR13' (155237..155521)" FT repeat_region 18377592..18377850 FT /rpt_family="L1" FT /note="84% identity: matches 167..423 of consensus" FT exon 18377101..18377174 FT /note="XPOUND prediction, score = 0.405" FT repeat_region complement(18376531..18376815) FT /rpt_type=INVERTED FT /note="IR13', 85% complementary to IR13 (154197..154478)" FT repeat_region complement(18376535..18376788) FT /rpt_family="L1" FT /note="85% identity: matches 176..424 of consensus" FT repeat_region 18376544..18376786 FT /rpt_family="ALU" FT /note="90% identity: matches 21..263 of consensus" FT repeat_region complement(18376443..18376454) FT /note="TTC repeat" FT exon 18376310..18376368 FT /note="GRAIL, score = 59%, comment = good shadow" FT exon 18375589..18375693 FT /note="XPOUND prediction, score = 0.620" FT repeat_region complement(18375366..18375399) FT /rpt_family="L1" FT /note="97% identity: matches 807..840 of consensus" FT repeat_region complement(18374481..18374616) FT /rpt_family="ALU" FT /note="83% identity: matches 378..512 of consensus" FT repeat_region complement(18374296..18374350) FT /rpt_family="aataa repeat" FT /rpt_type=TANDEM FT /note="homology = 80.0%, counts = 11" FT repeat_region complement(18374297..18374311) FT /note="AAATA repeat" FT exon complement(18371921..18372005) FT /note="GRAIL, score = 43%, comment = marginal" FT repeat_region complement(18371472..18371495) FT /rpt_type=INVERTED FT /note="IR14, 87% complementary to IR14' (162148..162171)" FT exon 18370403..18370450 FT /note="XPOUND prediction, score = 0.370" FT repeat_region complement(18370018..18370278) FT /rpt_family="L1" FT /note="86% identity: matches 161..416 of consensus" FT repeat_region 18370003..18370278 FT /rpt_family="ALU" FT /note="89% identity: matches 8..282 of consensus" FT exon 18370061..18370096 FT /note="XPOUND prediction, score = 0.464" FT repeat_region 18369885..18369970 FT /rpt_family="L1" FT /note="90% identity: matches 3..88 of consensus" FT repeat_region complement(18369881..18369904) FT /rpt_type=INVERTED FT /note="IR14', 87% complementary to IR14 (160557..160580)" FT exon complement(18369745..18369798) FT /note="XPOUND prediction, score = 0.593" FT repeat_region 18369696..18369757 FT /rpt_family="L1" FT /note="91% identity: matches 845..906 of consensus" FT repeat_region 18369522..18369643 FT /rpt_family="L1" FT /note="84% identity: matches 508..629 of consensus" FT repeat_region 18369440..18369518 FT /rpt_family="L1" FT /note="86% identity: matches 37..115 of consensus" FT repeat_region 18369382..18369478 FT /rpt_family="L1" FT /note="88% identity: matches 350..446 of consensus" FT repeat_region complement(18368097..18368211) FT /rpt_family="ALU" FT /note="93% identity: matches 295..409 of consensus" FT repeat_region 18368097..18368211 FT /rpt_family="L1" FT /note="89% identity: matches 411..525 of consensus" FT misc_feature complement(18367920..18368205) FT /note="CpG_island (%GC=57.0, o/e=0.75, #CpGs=21)" FT repeat_region complement(18367916..18368064) FT /rpt_family="ALU" FT /note="96% identity: matches 133..281 of consensus" FT repeat_region 18367916..18368064 FT /rpt_family="L1" FT /note="89% identity: matches 245..393 of consensus" FT repeat_region complement(18367890..18367913) FT /note="AAAAT repeat" FT repeat_region complement(18367879..18367913) FT /rpt_family="aaaat repeat" FT /rpt_type=TANDEM FT /note="homology = 85.7%, counts = 7" FT repeat_region complement(18367577..18367588) FT /note="AT repeat" FT repeat_region complement(18366811..18366892) FT /rpt_family="ALU" FT /note="92% identity: matches 376..457 of consensus" FT repeat_region 18366810..18366881 FT /rpt_family="THR" FT /note="86% identity: matches 5..76 of consensus" FT repeat_region 18366737..18366804 FT /rpt_family="L1" FT /note="89% identity: matches 264..331 of consensus" FT repeat_region complement(18366729..18366802) FT /rpt_family="ALU" FT /note="94% identity: matches 81..154 of consensus" FT repeat_region 18366672..18366741 FT /rpt_family="L1" FT /note="90% identity: matches 167..236 of consensus" FT repeat_region complement(18366667..18366740) FT /rpt_family="ALU" FT /note="91% identity: matches 193..266 of consensus" FT repeat_region complement(18365994..18366056) FT /rpt_family="MER1" FT /note="90% identity: matches 8..70 of consensus" FT repeat_region complement(18365817..18365951) FT /rpt_family="MER1" FT /note="88% identity: matches 263..397 of consensus" FT exon complement(18365755..18365771) FT /note="XPOUND prediction, score = 0.244" FT exon complement(18365719..18365748) FT /note="XPOUND prediction, score = 0.245" FT exon complement(18365220..18365231) FT /note="XPOUND prediction, score = 0.211" FT repeat_region complement(18364908..18365017) FT /rpt_family="THE" FT /note="87% identity: matches 14..124 of consensus" FT repeat_region complement(18364648..18364802) FT /rpt_family="THE" FT /note="87% identity: matches 214..367 of consensus" FT exon complement(18362423..18362429) FT /note="GENSCAN prediction, score = 2.02" FT exon 18362104..18362180 FT /note="MZEF prediction, score = 0.901" FT exon 18361639..18361742 FT /note="GRAIL, score = 86%, comment = excellent" FT repeat_region complement(18360234..18360248) FT /note="TTCAA repeat" FT repeat_region complement(18359573..18359609) FT /rpt_type=INVERTED FT /note="IR15, 94% complementary to IR15' (173095..173131)" FT exon complement(18359518..18359586) FT /note="MZEF prediction, score = 0.954" FT exon complement(18359408..18359556) FT /note="GRAIL, score = 40%, comment = marginal" FT exon 18358941..18359082 FT /note="MZEF prediction, score = 0.543" FT repeat_region complement(18358921..18358957) FT /rpt_type=INVERTED FT /note="IR15', 94% complementary to IR15 (172443..172479)" FT repeat_region complement(18358706..18358835) FT /rpt_family="L1" FT /note="82% identity: matches 471..601 of consensus" FT exon 18357396..18357422 FT /note="GRAIL, score = 46%, comment = marginal" FT repeat_region complement(18356603..18356635) FT /note="TG repeat" FT repeat_region complement(18356594..18356635) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 90.5%, counts = 21" FT exon 18356268..18356287 FT /note="XPOUND prediction, score = 0.268" FT exon complement(18355900..18356075) FT /note="GENSCAN prediction, score = 2.14" FT repeat_region 18355723..18355821 FT /rpt_family="ALU" FT /note="87% identity: matches 1..99 of consensus" FT repeat_region complement(18354971..18355010) FT /rpt_family="tttg repeat" FT /rpt_type=TANDEM FT /note="homology = 87.5%, counts = 10" FT repeat_region complement(18354976..18355000) FT /note="TGTT repeat" FT repeat_region 18354705..18354968 FT /rpt_family="ALU" FT /note="86% identity: matches 20..280 of consensus" FT repeat_region complement(18354698..18354968) FT /rpt_family="L1" FT /note="84% identity: matches 161..424 of consensus" FT exon 18354529..18354628 FT /note="GRAIL, score = 79%, comment = excellent" FT exon 18354599..18354618 FT /note="XPOUND prediction, score = 0.404" FT exon 18354266..18354276 FT /note="XPOUND prediction, score = 0.230" FT repeat_region complement(18354042..18354093) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 73.1%, counts = 26" FT repeat_region complement(18354047..18354067) FT /note="TA repeat" FT exon 18353235..18353245 FT /note="XPOUND prediction, score = 0.371" FT exon 18352135..18352344 FT /note="MZEF prediction, score = 0.595" FT exon complement(18350167..18350476) FT /note="GRAIL, score = 53%, comment = good" FT exon 18350178..18350230 FT /note="XPOUND prediction, score = 0.226" FT repeat_region complement(18349926..18349951) FT /rpt_type=INVERTED FT /note="IR16, 96% complementary to IR16' (182134..182159)" FT repeat_region complement(18349893..18349918) FT /rpt_type=INVERTED FT /note="IR16', 96% complementary to IR16 (182101..182126)" FT exon complement(18348689..18348816) FT /note="GRAIL, score = 54%, comment = good" FT exon 18348671..18348775 FT /note="GRAIL, score = 62%, comment = good shadow" FT exon 18348680..18348706 FT /note="XPOUND prediction, score = 0.227" FT exon 18348608..18348705 FT /note="MZEF prediction, score = 0.751" FT exon 18347821..18347978 FT /note="GRAIL, score = 84%, comment = excellent" FT exon complement(18347817..18347927) FT /note="GRAIL, score = 51%, comment = good shadow" FT exon 18347828..18347841 FT /note="XPOUND prediction, score = 0.360" FT exon 18344688..18344792 FT /note="GRAIL, score = 62%, comment = good" FT repeat_region complement(18344354..18344405) FT /rpt_family="ALU" FT /note="90% identity: matches 345..396 of consensus" FT misc_feature 18469224..18682439 FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon 18533245..18533290 FT /note="MZEF prediction, score = 0.998" FT exon 18534219..18534243 FT /note="XPOUND prediction, score = 0.209" FT exon complement(18534287..18534359) FT /note="MZEF prediction, score = 0.923" FT repeat_region 18534369..18534383 FT /note="AAG repeat" FT repeat_region complement(18534632..18534870) FT /rpt_family="THR" FT /note="82% identity: matches 696..937 of consensus" FT repeat_region complement(18534921..18535070) FT /rpt_family="THR" FT /note="86% identity: matches 90..240 of consensus" FT repeat_region complement(18535085..18535138) FT /rpt_family="THR" FT /note="90% identity: matches 531..584 of consensus" FT repeat_region complement(18535157..18535543) FT /rpt_family="THR" FT /note="84% identity: matches 47..431 of consensus" FT repeat_region complement(18535697..18535809) FT /rpt_family="THE" FT /note="84% identity: matches 1..114 of consensus" FT repeat_region complement(18535898..18535958) FT /rpt_family="THE" FT /note="93% identity: matches 1..61 of consensus" FT exon 18536658..18536725 FT /note="MZEF prediction, score = 0.697" FT exon 18537398..18537413 FT /note="XPOUND prediction, score = 0.205" FT exon 18537433..18537455 FT /note="XPOUND prediction, score = 0.213" FT exon 18537466..18537508 FT /note="XPOUND prediction, score = 0.596" FT repeat_region 18537753..18537863 FT /rpt_family="ALU" FT /note="83% identity: matches 299..409 of consensus" FT repeat_region 18537877..18537966 FT /rpt_family="aga repeat" FT /rpt_type=TANDEM FT /note="homology = 76.7%, counts = 30" FT exon 18537893..18538058 FT /note="GENSCAN prediction, score = 7.81" FT exon 18537894..18538040 FT /note="XPOUND prediction, score = 0.832" FT repeat_region 18537897..18538002 FT /note="AAG repeat" FT repeat_region 18538001..18538027 FT /rpt_family="agg repeat" FT /rpt_type=TANDEM FT /note="homology = 92.6%, counts = 9" FT repeat_region 18538003..18538025 FT /note="GAG repeat" FT exon 18539345..18539368 FT /note="XPOUND prediction, score = 0.418" FT repeat_region complement(18541232..18541422) FT /rpt_family="L1" FT /note="85% identity: matches 397..591 of consensus" FT repeat_region 18541239..18541507 FT /rpt_family="ALU" FT /note="87% identity: matches 13..276 of consensus" FT exon complement(18542760..18542800) FT /note="MZEF prediction, score = 0.591" FT exon 18542866..18542884 FT /note="XPOUND prediction, score = 0.347" FT exon complement(18543176..18543273) FT /note="MZEF prediction, score = 0.655" FT exon 18543724..18543817 FT /note="MZEF prediction, score = 0.889" FT exon complement(18544060..18544115) FT /note="MZEF prediction, score = 0.715" FT exon complement(18545902..18545949) FT /note="XPOUND prediction, score = 0.266" FT exon complement(18546798..18546801) FT /note="XPOUND prediction, score = 0.202" FT repeat_region 18547621..18547632 FT /note="TA repeat" FT repeat_region 18547979..18547989 FT /note="AT repeat" FT repeat_region 18548753..18548816 FT /rpt_family="taaa repeat" FT /rpt_type=TANDEM FT /note="homology = 68.8%, counts = 16" FT repeat_region 18549548..18549567 FT /note="TATG repeat" FT exon complement(18549838..18549853) FT /note="XPOUND prediction, score = 0.257" FT exon 18550576..18550601 FT /note="XPOUND prediction, score = 0.416" FT repeat_region 18551896..18551955 FT /rpt_family="gtatct repeat" FT /rpt_type=TANDEM FT /note="homology = 71.7%, counts = 10" FT repeat_region 18553886..18553900 FT /note="TTATT repeat" FT exon complement(18554452..18554562) FT /note="MZEF prediction, score = 0.794" FT repeat_region 18554632..18554719 FT /rpt_family="tttttttttat repeat" FT /rpt_type=TANDEM FT /note="homology = 68.2%, counts = 8" FT exon complement(18555151..18555234) FT /note="MZEF prediction, score = 0.632" FT exon 18555788..18555824 FT /note="XPOUND prediction, score = 0.351" FT repeat_region 18555957..18555993 FT /rpt_family="L1" FT /note="100% identity: matches 614..650 of consensus" FT exon 18556017..18556078 FT /note="MZEF prediction, score = 0.750" FT exon 18556059..18556078 FT /note="XPOUND prediction, score = 0.255" FT exon complement(18556964..18557106) FT /note="MZEF prediction, score = 0.758" FT exon 18557444..18557662 FT /note="GENSCAN prediction, score = 11.58" FT exon 18557554..18557705 FT /note="XPOUND prediction, score = 0.615" FT repeat_region complement(18558036..18558110) FT /rpt_family="L1" FT /note="94% identity: matches 1632..1706 of consensus" FT repeat_region complement(18558075..18558335) FT /rpt_family="L1" FT /note="86% identity: matches 17..277 of consensus" FT repeat_region complement(18558204..18560623) FT /rpt_family="L1" FT /note="88% identity: matches 3406..5827 of consensus" FT repeat_region complement(18560647..18560925) FT /rpt_family="L1" FT /note="89% identity: matches 3203..3483 of consensus" FT repeat_region complement(18560977..18561055) FT /rpt_family="L1" FT /note="92% identity: matches 151..229 of consensus" FT repeat_region complement(18561082..18562758) FT /rpt_family="L1" FT /note="89% identity: matches 1284..2978 of consensus" FT exon complement(18561289..18561423) FT /note="MZEF prediction, score = 0.506" FT repeat_region complement(18562247..18563600) FT /rpt_family="L1" FT /note="88% identity: matches 3..1370 of consensus" FT exon 18563277..18563459 FT /note="GENSCAN prediction, score = 1.86" FT exon 18563309..18563361 FT /note="XPOUND prediction, score = 0.228" FT repeat_region complement(18563680..18563745) FT /rpt_family="L1" FT /note="87% identity: matches 150..215 of consensus" FT exon 18563727..18563758 FT /note="XPOUND prediction, score = 0.281" FT repeat_region complement(18563757..18563966) FT /rpt_family="L1" FT /note="85% identity: matches 10..220 of consensus" FT exon 18563882..18563907 FT /note="XPOUND prediction, score = 0.297" FT repeat_region complement(18564067..18564465) FT /rpt_family="L1" FT /note="83% identity: matches 1..400 of consensus" FT exon 18564613..18564629 FT /note="XPOUND prediction, score = 0.227" FT exon 18566751..18566797 FT /note="XPOUND prediction, score = 0.248" FT repeat_region complement(18567206..18567450) FT /rpt_family="L1" FT /note="82% identity: matches 174..413 of consensus" FT repeat_region 18567212..18567450 FT /rpt_family="ALU" FT /note="88% identity: matches 329..566 of consensus" FT exon complement(18567379..18567436) FT /note="XPOUND prediction, score = 0.462" FT repeat_region 18567622..18567640 FT /rpt_type=INVERTED FT /note="IR4, 94% complementary to IR4' (98903..98921)" FT repeat_region 18568032..18568065 FT /rpt_family="MER44" FT /note="97% identity: matches 140..173 of consensus" FT repeat_region 18568126..18568144 FT /rpt_type=INVERTED FT /note="IR4', 94% complementary to IR4 (98399..98417)" FT repeat_region 18570076..18570129 FT /rpt_family="ALU" FT /note="90% identity: matches 2..55 of consensus" FT repeat_region 18571917..18572187 FT /rpt_family="ALU" FT /note="83% identity: matches 142..412 of consensus" FT repeat_region complement(18571920..18572035) FT /rpt_family="L1" FT /note="88% identity: matches 470..585 of consensus" FT repeat_region complement(18572109..18572187) FT /rpt_family="L1" FT /note="89% identity: matches 166..244 of consensus" FT repeat_region 18572343..18572357 FT /note="TATT repeat" FT repeat_region 18573301..18573333 FT /rpt_type=INVERTED FT /note="IR5, 90% complementary to IR5' (104125..104157)" FT repeat_region 18573348..18573380 FT /rpt_type=INVERTED FT /note="IR5', 90% complementary to IR5 (104078..104110)" FT exon 18574028..18574264 FT /note="GENSCAN prediction, score = 20.29" FT /note="MZEF prediction, score = 0.982" FT exon complement(18574080..18574096) FT /note="XPOUND prediction, score = 0.279" FT repeat_region 18574579..18574616 FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 94.7%, counts = 19" FT repeat_region 18574594..18574616 FT /note="TG repeat" FT exon 18574623..18574661 FT /note="MZEF prediction, score = 0.605" FT repeat_region 18576114..18576130 FT /rpt_type=INVERTED FT /note="IR6, 100% complementary to IR6' (106910..106926)" FT repeat_region 18576133..18576149 FT /rpt_type=INVERTED FT /note="IR6', 100% complementary to IR6 (106891..106907)" FT repeat_region 18576187..18576200 FT /note="TTA repeat" FT exon complement(18576739..18576819) FT /note="MZEF prediction, score = 0.587" FT repeat_region 18576765..18576776 FT /note="GTA repeat" FT repeat_region 18576862..18576904 FT /rpt_type=INVERTED FT /note="IR7, 83% complementary to IR7' (109349..109390)" FT repeat_region complement(18577217..18577483) FT /rpt_family="L1" FT /note="82% identity: matches 161..423 of consensus" FT repeat_region 18577222..18577476 FT /rpt_family="ALU" FT /note="86% identity: matches 22..276 of consensus" FT repeat_region 18577484..18577497 FT /note="TAAA repeat" FT exon complement(18577525..18577564) FT /note="XPOUND prediction, score = 0.533" FT repeat_region 18577614..18577693 FT /rpt_family="aatgtgtaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 68.8%, counts = 8" FT repeat_region 18578572..18578613 FT /rpt_type=INVERTED FT /note="IR7', 83% complementary to IR7 (107639..107681)" FT repeat_region complement(18578671..18579049) FT /rpt_family="L1" FT /note="99% identity: matches 5178..5556 of consensus" FT repeat_region 18579053..18579343 FT /rpt_family="L1" FT /note="98% identity: matches 5548..5838 of consensus" FT repeat_region 18579366..18579493 FT /rpt_family="L1" FT /note="97% identity: matches 5882..6009 of consensus" FT repeat_region 18579498..18579512 FT /note="AAAT repeat" FT repeat_region 18582381..18582548 FT /rpt_family="THE" FT /note="85% identity: matches 1..167 of consensus" FT repeat_region 18582576..18582846 FT /rpt_family="ALU" FT /note="90% identity: matches 314..583 of consensus" FT repeat_region complement(18582576..18582846) FT /rpt_family="L1" FT /note="86% identity: matches 245..515 of consensus" FT repeat_region 18582847..18582910 FT /note="AAAAT repeat" FT repeat_region 18582847..18582911 FT /rpt_family="aaaat repeat" FT /rpt_type=TANDEM FT /note="homology = 83.1%, counts = 13" FT repeat_region 18582912..18583095 FT /rpt_family="THE" FT /note="85% identity: matches 159..345 of consensus" FT exon 18582913..18583014 FT /note="MZEF prediction, score = 0.541" FT repeat_region 18583102..18583178 FT /rpt_family="THR" FT /note="92% identity: matches 1..77 of consensus" FT repeat_region 18583177..18584052 FT /rpt_family="THR" FT /note="83% identity: matches 590..1464 of consensus" FT exon complement(18583232..18583357) FT /note="GENSCAN prediction, score = 5.40" FT exon complement(18583242..18583271) FT /note="XPOUND prediction, score = 0.226" FT repeat_region 18584111..18584187 FT /rpt_family="THE" FT /note="88% identity: matches 1..77 of consensus" FT exon complement(18584147..18584267) FT /note="MZEF prediction, score = 0.912" FT repeat_region 18584166..18584468 FT /rpt_family="L1" FT /note="82% identity: matches 2278..2578 of consensus" FT exon complement(18584847..18584863) FT /note="XPOUND prediction, score = 0.815" FT repeat_region 18585667..18585847 FT /rpt_family="L1" FT /note="84% identity: matches 903..1083 of consensus" FT repeat_region 18585939..18586316 FT /rpt_family="L1" FT /note="83% identity: matches 3871..4249 of consensus" FT repeat_region 18586444..18586964 FT /rpt_family="L1" FT /note="82% identity: matches 4373..4892 of consensus" FT repeat_region 18586998..18587248 FT /rpt_family="L1" FT /note="84% identity: matches 174..424 of consensus" FT exon complement(18587000..18587034) FT /note="XPOUND prediction, score = 0.475" FT repeat_region 18587269..18587404 FT /rpt_family="L1" FT /note="83% identity: matches 259..396 of consensus" FT exon 18587408..18587432 FT /note="XPOUND prediction, score = 0.275" FT repeat_region complement(18587702..18587841) FT /rpt_family="L1" FT /note="87% identity: matches 123..269 of consensus" FT repeat_region complement(18587915..18588099) FT /rpt_family="L1" FT /note="83% identity: matches 188..372 of consensus" FT repeat_region complement(18588334..18588399) FT /rpt_family="L1" FT /note="87% identity: matches 636..701 of consensus" FT repeat_region complement(18588659..18588859) FT /rpt_family="L1" FT /note="82% identity: matches 175..370 of consensus" FT repeat_region 18588867..18588911 FT /note="AT repeat" FT repeat_region 18588867..18588916 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 90.0%, counts = 25" FT repeat_region complement(18588926..18588996) FT /rpt_family="ALU" FT /note="90% identity: matches 510..580 of consensus" FT repeat_region complement(18589001..18589159) FT /rpt_family="ALU" FT /note="90% identity: matches 16..176 of consensus" FT repeat_region 18589042..18589159 FT /rpt_family="L1" FT /note="94% identity: matches 464..581 of consensus" FT repeat_region complement(18589484..18589560) FT /rpt_family="L1" FT /note="89% identity: matches 117..193 of consensus" FT repeat_region complement(18589948..18590062) FT /rpt_family="L1" FT /note="81% identity: matches 769..883 of consensus" FT repeat_region complement(18590335..18590400) FT /rpt_family="L1" FT /note="86% identity: matches 479..544 of consensus" FT repeat_region complement(18591066..18591124) FT /rpt_family="L1" FT /note="88% identity: matches 468..526 of consensus" FT repeat_region complement(18591174..18591276) FT /rpt_family="L1" FT /note="84% identity: matches 305..407 of consensus" FT exon 18591806..18591897 FT /note="MZEF prediction, score = 0.688" FT exon 18591833..18591920 FT /note="XPOUND prediction, score = 0.417" FT exon 18592120..18592166 FT /note="XPOUND prediction, score = 0.668" FT exon complement(18592475..18592624) FT /note="GENSCAN prediction, score = 7.43" FT repeat_region complement(18592599..18592859) FT /rpt_family="L1" FT /note="87% identity: matches 452..713 of consensus" FT repeat_region complement(18592875..18593209) FT /rpt_family="L1" FT /note="84% identity: matches 1098..1433 of consensus" FT repeat_region 18592955..18592969 FT /note="TATTT repeat" FT repeat_region complement(18593355..18593423) FT /rpt_family="L1" FT /note="88% identity: matches 349..417 of consensus" FT repeat_region 18593366..18593527 FT /rpt_family="tttcttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 60.5%, counts = 18" FT repeat_region complement(18593447..18593773) FT /rpt_family="L1" FT /note="83% identity: matches 6..325 of consensus" FT repeat_region complement(18593815..18593947) FT /rpt_family="L1" FT /note="82% identity: matches 159..292 of consensus" FT repeat_region 18593952..18594081 FT /rpt_family="gtttattttttgt repeat" FT /rpt_type=TANDEM FT /note="homology = 63.8%, counts = 10" FT exon 18595264..18595349 FT /note="XPOUND prediction, score = 0.410" FT exon 18595362..18595385 FT /note="XPOUND prediction, score = 0.235" FT repeat_region 18596466..18596481 FT /note="TATT repeat" FT repeat_region complement(18596503..18596547) FT /rpt_family="ALU" FT /note="97% identity: matches 937..981 of consensus" FT exon 18596535..18596569 FT /note="XPOUND prediction, score = 0.418" FT exon 18596764..18596789 FT /note="XPOUND prediction, score = 0.252" FT repeat_region 18598231..18598246 FT /note="TTTTA repeat" FT exon complement(18598292..18598373) FT /note="MZEF prediction, score = 0.938" FT exon 18599865..18599967 FT /note="MZEF prediction, score = 0.628" FT repeat_region 18599871..18599991 FT /rpt_family="ALU" FT /note="94% identity: matches 329..449 of consensus" FT repeat_region complement(18599874..18599994) FT /rpt_family="L1" FT /note="91% identity: matches 401..521 of consensus" FT exon complement(18600131..18600199) FT /note="GENSCAN prediction, score = 1.56" FT /note="MZEF prediction, score = 0.637" FT exon 18601260..18601305 FT /note="XPOUND prediction, score = 0.364" FT exon 18601343..18601396 FT /note="XPOUND prediction, score = 0.402" FT exon 18601664..18601673 FT /note="XPOUND prediction, score = 0.211" FT repeat_region 18601706..18601735 FT /rpt_type=INVERTED FT /note="IR8, 93% complementary to IR8' (132544..132574)" FT repeat_region 18601767..18601797 FT /rpt_type=INVERTED FT /note="IR8', 93% complementary to IR8 (132483..132512)" FT exon 18603234..18603253 FT /note="XPOUND prediction, score = 0.384" FT repeat_region 18603340..18603417 FT /note="TATGC repeat" FT repeat_region 18603340..18603439 FT /rpt_family="tatgc repeat" FT /rpt_type=TANDEM FT /note="homology = 95.0%, counts = 20" FT exon complement(18603777..18603847) FT /note="MZEF prediction, score = 0.601" FT exon complement(18604049..18604130) FT /note="MZEF prediction, score = 0.561" FT repeat_region 18607571..18607592 FT /note="TTA repeat" FT repeat_region complement(18607594..18607714) FT /rpt_family="L1" FT /note="95% identity: matches 444..563 of consensus" FT exon complement(18607735..18607887) FT /note="GENSCAN prediction, score = 4.07" FT repeat_region complement(18607738..18607985) FT /rpt_family="L1" FT /note="93% identity: matches 136..384 of consensus" FT exon complement(18608709..18608725) FT /note="XPOUND prediction, score = 0.910" FT exon 18610063..18610155 FT /note="MZEF prediction, score = 0.661" FT repeat_region 18612539..18612643 FT /rpt_family="L1" FT /note="81% identity: matches 2309..2422 of consensus" FT repeat_region 18612597..18613012 FT /rpt_family="L1" FT /note="84% identity: matches 357..779 of consensus" FT exon 18612803..18612973 FT /note="MZEF prediction, score = 0.561" FT repeat_region 18613040..18613085 FT /rpt_family="L1" FT /note="95% identity: matches 5203..5248 of consensus" FT repeat_region 18613111..18613567 FT /rpt_family="L1" FT /note="84% identity: matches 3530..3986 of consensus" FT repeat_region 18613621..18613635 FT /note="AAAC repeat" FT repeat_region 18613836..18613894 FT /rpt_family="L1" FT /note="93% identity: matches 567..625 of consensus" FT exon complement(18614107..18614189) FT /note="XPOUND prediction, score = 0.653" FT exon 18615111..18615294 FT /note="MZEF prediction, score = 0.650" FT repeat_region 18615212..18615225 FT /note="AAAAC repeat" FT repeat_region 18615226..18615239 FT /note="AACA repeat" FT exon 18615286..18615294 FT /note="XPOUND prediction, score = 0.887" FT exon 18615403..18615434 FT /note="XPOUND prediction, score = 0.922" FT repeat_region complement(18616042..18616301) FT /rpt_family="ALU" FT /note="84% identity: matches 21..281 of consensus" FT repeat_region 18616049..18616218 FT /rpt_family="L1" FT /note="79% identity: matches 252..424 of consensus" FT repeat_region 18616191..18616311 FT /rpt_family="L1" FT /note="85% identity: matches 465..585 of consensus" FT exon 18618700..18618723 FT /note="GENSCAN prediction, score = 3.10" FT exon 18619229..18619308 FT /note="MZEF prediction, score = 0.956" FT exon complement(18619597..18619774) FT /note="MZEF prediction, score = 0.531" FT repeat_region 18620396..18620435 FT /rpt_type=INVERTED FT /note="IR9, 77% complementary to IR9' (152464..152503)" FT repeat_region 18621549..18621598 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 92.0%, counts = 25" FT repeat_region 18621555..18621598 FT /note="CA repeat" FT repeat_region 18621687..18621726 FT /rpt_type=INVERTED FT /note="IR9', 77% complementary to IR9 (151173..151212)" FT exon 18622163..18622199 FT /note="XPOUND prediction, score = 0.396" FT exon 18622241..18622367 FT /note="GENSCAN prediction, score = 12.63" FT /note="MZEF prediction, score = 0.931" FT exon 18622242..18622331 FT /note="XPOUND prediction, score = 0.590" FT exon 18622843..18622868 FT /note="XPOUND prediction, score = 0.264" FT repeat_region 18622851..18622913 FT /rpt_family="gtttttg repeat" FT /rpt_type=TANDEM FT /note="homology = 77.8%, counts = 9" FT repeat_region 18622927..18623178 FT /rpt_family="L1" FT /note="85% identity: matches 176..424 of consensus" FT repeat_region complement(18622937..18623184) FT /rpt_family="ALU" FT /note="87% identity: matches 465..712 of consensus" FT exon 18625055..18625118 FT /note="MZEF prediction, score = 0.696" FT exon 18625100..18625118 FT /note="XPOUND prediction, score = 0.267" FT exon 18625927..18625940 FT /note="XPOUND prediction, score = 0.314" FT exon 18626711..18626739 FT /note="XPOUND prediction, score = 0.240" FT repeat_region 18626804..18626952 FT /note="TTTC repeat" FT repeat_region 18626838..18626989 FT /rpt_family="tttc repeat" FT /rpt_type=TANDEM FT /note="homology = 79.6%, counts = 38" FT repeat_region 18626962..18626975 FT /note="TTTC repeat" FT repeat_region complement(18627102..18627268) FT /rpt_family="ALU" FT /note="86% identity: matches 11..177 of consensus" FT repeat_region 18627147..18627268 FT /rpt_family="L1" FT /note="87% identity: matches 464..585 of consensus" FT repeat_region complement(18628971..18629005) FT /rpt_family="ALU" FT /note="100% identity: matches 149..183 of consensus" FT repeat_region 18629947..18630018 FT /rpt_family="gttt repeat" FT /rpt_type=TANDEM FT /note="homology = 66.7%, counts = 18" FT repeat_region 18629984..18629998 FT /note="TTTG repeat" FT repeat_region 18631494..18631511 FT /note="AAAAT repeat" FT exon 18633300..18633302 FT /note="XPOUND prediction, score = 0.204" FT exon 18633304..18633308 FT /note="XPOUND prediction, score = 0.207" FT repeat_region 18633309..18633541 FT /rpt_family="ALU" FT /note="89% identity: matches 1..233 of consensus" FT repeat_region complement(18633322..18633598) FT /rpt_family="L1" FT /note="86% identity: matches 155..424 of consensus" FT exon 18633354..18633358 FT /note="XPOUND prediction, score = 0.212" FT exon 18633375..18633406 FT /note="XPOUND prediction, score = 0.457" FT repeat_region 18633486..18633598 FT /rpt_family="ALU" FT /note="85% identity: matches 369..477 of consensus" FT exon complement(18633987..18634037) FT /note="MZEF prediction, score = 0.809" FT repeat_region 18634309..18634456 FT /rpt_family="ALU" FT /note="83% identity: matches 486..633 of consensus" FT repeat_region complement(18634350..18634411) FT /rpt_family="L1" FT /note="88% identity: matches 464..526 of consensus" FT repeat_region 18634442..18634516 FT /rpt_family="L1" FT /note="86% identity: matches 339..413 of consensus" FT repeat_region 18634567..18634827 FT /rpt_family="ALU" FT /note="90% identity: matches 11..269 of consensus" FT repeat_region complement(18634570..18634827) FT /rpt_family="L1" FT /note="84% identity: matches 170..424 of consensus" FT repeat_region 18634848..18634883 FT /rpt_type=INVERTED FT /note="IR10, 85% complementary to IR10' (165663..165697)" FT repeat_region 18634849..18634904 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 87.5%, counts = 28" FT repeat_region 18634857..18634883 FT /note="AT repeat" FT repeat_region 18634886..18634920 FT /rpt_type=INVERTED FT /note="IR10', 85% complementary to IR10 (165625..165660)" FT repeat_region 18634908..18634919 FT /note="AT repeat" FT exon 18634932..18634974 FT /note="MZEF prediction, score = 0.540" FT exon 18635033..18635112 FT /note="XPOUND prediction, score = 0.741" FT exon complement(18635523..18635586) FT /note="MZEF prediction, score = 0.551" FT exon 18635941..18636015 FT /note="GENSCAN prediction, score = 7.87" FT /note="MZEF prediction, score = 0.992" FT exon complement(18638514..18638581) FT /note="MZEF prediction, score = 0.564" FT exon 18639252..18639409 FT /note="GENSCAN prediction, score = 8.41" FT /note="MZEF prediction, score = 0.805" FT exon 18640267..18640300 FT /note="XPOUND prediction, score = 0.370" FT exon 18640588..18640612 FT /note="XPOUND prediction, score = 0.748" FT exon 18640969..18641014 FT /note="GENSCAN prediction, score = 0.40" FT repeat_region complement(18642823..18642926) FT /rpt_family="L1" FT /note="82% identity: matches 1805..1908 of consensus" FT exon complement(18643093..18643118) FT /note="MZEF prediction, score = 0.938" FT repeat_region complement(18643352..18643465) FT /rpt_family="L1" FT /note="85% identity: matches 2982..3095 of consensus" FT repeat_region complement(18643507..18643583) FT /rpt_family="L1" FT /note="85% identity: matches 75..151 of consensus" FT repeat_region complement(18643725..18643798) FT /rpt_family="L1" FT /note="85% identity: matches 213..286 of consensus" FT repeat_region 18643823..18643912 FT /rpt_family="ttttttgtgg repeat" FT /rpt_type=TANDEM FT /note="homology = 67.8%, counts = 9" FT repeat_region 18644364..18644402 FT /rpt_family="tat repeat" FT /rpt_type=TANDEM FT /note="homology = 82.1%, counts = 13" FT repeat_region complement(18644394..18644524) FT /rpt_family="L1" FT /note="95% identity: matches 408..538 of consensus" FT repeat_region complement(18644552..18647364) FT /rpt_family="L1" FT /note="96% identity: matches 3043..5858 of consensus" FT exon complement(18645045..18646648) FT /note="GENSCAN prediction, score = 22.70" FT exon complement(18645971..18646122) FT /note="MZEF prediction, score = 0.635" FT repeat_region complement(18647378..18649077) FT /rpt_family="L1" FT /note="96% identity: matches 1338..3037 of consensus" FT repeat_region 18647827..18647840 FT /note="GGTGT repeat" FT exon complement(18648490..18649134) FT /note="GENSCAN prediction, score = 24.72" FT repeat_region complement(18649150..18650536) FT /rpt_family="L1" FT /note="87% identity: matches 7..1382 of consensus" FT exon 18649759..18649774 FT /note="XPOUND prediction, score = 0.441" FT exon 18650226..18650253 FT /note="XPOUND prediction, score = 0.211" FT exon complement(18650445..18650580) FT /note="MZEF prediction, score = 0.606" FT exon 18651044..18651074 FT /note="XPOUND prediction, score = 0.304" FT exon 18651088..18651165 FT /note="XPOUND prediction, score = 0.776" FT exon complement(18651253..18651429) FT /note="MZEF prediction, score = 0.590" FT repeat_region 18651909..18651923 FT /note="TA repeat" FT repeat_region 18652067..18652079 FT /note="AAAG repeat" FT repeat_region 18652138..18652308 FT /rpt_family="ALU" FT /note="88% identity: matches 507..676 of consensus" FT repeat_region complement(18652138..18652308) FT /rpt_family="L1" FT /note="84% identity: matches 222..388 of consensus" FT repeat_region 18653287..18653298 FT /note="TCC repeat" FT repeat_region 18653952..18654230 FT /rpt_family="ALU" FT /note="85% identity: matches 311..587 of consensus" FT repeat_region complement(18653955..18654150) FT /rpt_family="L1" FT /note="82% identity: matches 388..585 of consensus" FT repeat_region complement(18654128..18654230) FT /rpt_family="L1" FT /note="85% identity: matches 157..259 of consensus" FT exon 18654401..18654417 FT /note="XPOUND prediction, score = 0.204" FT repeat_region 18655619..18655666 FT /rpt_family="aaaaaaac repeat" FT /rpt_type=TANDEM FT /note="homology = 81.2%, counts = 6" FT repeat_region 18655647..18655661 FT /note="AAAC repeat" FT repeat_region 18656345..18656652 FT /rpt_type=INVERTED FT /note="IR11, 88% complementary to IR11' (188742..189051)" FT repeat_region complement(18656348..18656621) FT /rpt_family="L1" FT /note="89% identity: matches 250..526 of consensus" FT repeat_region 18656353..18656624 FT /rpt_family="ALU" FT /note="91% identity: matches 6..276 of consensus" FT exon 18657568..18657597 FT /note="XPOUND prediction, score = 0.223" FT exon 18657637..18657664 FT /note="XPOUND prediction, score = 0.251" FT repeat_region 18657965..18658274 FT /rpt_type=INVERTED FT /note="IR11', 88% complementary to IR11 (187122..187429)" FT repeat_region 18657991..18658262 FT /rpt_family="L1" FT /note="91% identity: matches 245..517 of consensus" FT repeat_region complement(18657991..18658268) FT /rpt_family="ALU" FT /note="94% identity: matches 4..281 of consensus" FT misc_feature 18658003..18658272 FT /note="CpG_island (%GC=63.0, o/e=0.82, #CpGs=23)" FT exon complement(18658176..18658209) FT /note="XPOUND prediction, score = 0.251" FT exon complement(18658330..18658351) FT /note="XPOUND prediction, score = 0.384" FT repeat_region complement(18659489..18659615) FT /rpt_family="L1" FT /note="83% identity: matches 464..588 of consensus" FT repeat_region 18659492..18659756 FT /rpt_family="ALU" FT /note="89% identity: matches 11..270 of consensus" FT repeat_region complement(18659552..18659756) FT /rpt_family="L1" FT /note="86% identity: matches 169..370 of consensus" FT repeat_region 18659773..18659785 FT /note="AAGA repeat" FT exon complement(18660066..18660162) FT /note="MZEF prediction, score = 0.630" FT exon 18660966..18661021 FT /note="MZEF prediction, score = 0.724" FT exon complement(18661666..18661706) FT /note="MZEF prediction, score = 0.913" FT exon 18661933..18662071 FT /note="MZEF prediction, score = 0.844" FT exon complement(18662229..18662385) FT /note="XPOUND prediction, score = 0.456" FT exon complement(18662769..18662868) FT /note="XPOUND prediction, score = 0.555" FT exon 18663073..18663089 FT /note="XPOUND prediction, score = 0.256" FT STS 18663822..18663923 FT /standard_name="WI-2408 (DXYS5Y), Map: (946,948)_H_(1,12), FT Homo sapiens" FT /note="GenBank Accession Number: G03960" FT exon complement(18665035..18665079) FT /note="MZEF prediction, score = 0.538" FT exon complement(18665766..18665797) FT /note="XPOUND prediction, score = 0.235" FT exon complement(18667387..18667417) FT /note="XPOUND prediction, score = 0.359" FT exon complement(18667694..18667715) FT /note="XPOUND prediction, score = 0.362" FT exon complement(18668172..18668209) FT /note="MZEF prediction, score = 0.977" FT repeat_region 18668606..18668638 FT /rpt_type=INVERTED FT /note="IR12, 78% complementary to IR12' (199648..199680)" FT repeat_region 18668871..18668903 FT /rpt_type=INVERTED FT /note="IR12', 78% complementary to IR12 (199383..199415)" FT exon complement(18670171..18670285) FT /note="MZEF prediction, score = 0.747" FT repeat_region complement(18670961..18671023) FT /rpt_family="MER2" FT /note="92% identity: matches 20..82 of consensus" FT exon 18671763..18671852 FT /note="MZEF prediction, score = 0.841" FT repeat_region 18671795..18672034 FT /rpt_family="ALU" FT /note="92% identity: matches 14..253 of consensus" FT repeat_region complement(18671795..18672034) FT /rpt_family="L1" FT /note="87% identity: matches 245..484 of consensus" FT repeat_region 18672488..18672543 FT /rpt_family="gtgtatacatgtgt repeat" FT /rpt_type=TANDEM FT /note="homology = 82.1%, counts = 4" FT repeat_region 18674184..18674229 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 91.3%, counts = 23" FT repeat_region 18674197..18674230 FT /note="CA repeat" FT repeat_region 18674465..18674475 FT /note="CT repeat" FT repeat_region 18674619..18674716 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 61.2%, counts = 49" FT exon 18674820..18674987 FT /note="GENSCAN prediction, score = 12.58" FT exon complement(18674852..18674873) FT /note="XPOUND prediction, score = 0.233" FT exon 18675128..18675153 FT /note="XPOUND prediction, score = 0.446" FT exon 18675829..18675905 FT /note="MZEF prediction, score = 0.995" FT repeat_region 18675960..18675991 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 84.4%, counts = 16" FT repeat_region 18675991..18676001 FT /note="AG repeat" FT exon complement(18678049..18678162) FT /note="MZEF prediction, score = 0.953" FT exon complement(18678309..18678364) FT /note="MZEF prediction, score = 0.896" FT exon 18679992..18680029 FT /note="XPOUND prediction, score = 0.460" FT exon 18680310..18680514 FT /note="GENSCAN prediction, score = 6.48" FT /note="MZEF prediction, score = 0.770" FT exon 18680318..18680514 FT /note="XPOUND prediction, score = 0.636" FT exon 18680573..18680588 FT /note="XPOUND prediction, score = 0.207" FT exon 18680956..18681001 FT /note="MZEF prediction, score = 0.774" FT exon 18681613..18681658 FT /note="MZEF prediction, score = 0.545" FT exon 18681810..18681957 FT /note="GENSCAN prediction, score = 8.89" FT /note="MZEF prediction, score = 0.857" FT exon 18681831..18681863 FT /note="XPOUND prediction, score = 0.431" FT misc_feature 18682440..18753122 FT /note="annotated region of clone" FT CDS join(complement(AL442638.3:57759..57821), FT complement(AL442638.3:27098..27225), FT AL449963.2:64022..64067,AL449963.2:104805..105041, FT AL449963.2:153018..153144,AL449963.2:166718..166792, FT AL449963.2:170029..170186,AL449963.2:188414..188525, FT AL449963.2:192710..192848,AL449963.2:206632..206682, FT AL449963.2:211087..211291,AL449963.2:212587..212734, FT 18684714..18684802) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-001" FT /standard_name="OTTHUMP00000021085" FT /product="ADAMTS-like 1" FT /note="match: proteins: Sw:Q8N6G6" FT /protein_id="CAI14851.1" FT /translation="MECCRRATPGTLLLFLAFLLLSSRTARSEEDRDGLWDAWGPWSEC FT SRTCGGGASYSLRRCLSSKSCEGRNIRYRTCSNVDCPPEAGDFRAQQCSAHNDVKHHGQ FT FYEWLPVSNDPDNPCSLKCQAKGTTLVVELAPKVLDGTRCYTESLDMCISGLCQIVGCD FT HQLGSTVKEDNCGVCNGDGSTCRLVRGQYKSQLSATKSDDTVVAIPYGSRHIRLVLKGP FT DHLYLETKTLQGTKGENSLSSTGTFLVDNSSVDFQKFPDKEILRMAGPLTADFIVKIRN FT SGSADSTVQFIFYQPIIHRWRETDFFPCSATCGGGYQLTSAECYDLRSNRVVADQYCHY FT YPENIKPKPKLQECNLDPCPASDGYKQIMPYDLYHPLPRWEATPWTACSSSCGGGIQSR FT AVSCVEEDIQGHVTSVEEWKCMYTPKMPIAQPCNIFDCPKWLAQEWSPCTVTCGQGLRY FT RVVLCIDHRGMHTGGCSPKTKPHIKEECIVPTPCYKPKEKLPVEAKLPWFKQAQELEEG FT AAVSEEPS" FT mRNA join(complement(AL442638.3:57759..58160), FT complement(AL442638.3:27098..27225), FT AL449963.2:64022..64067,AL449963.2:104805..105041, FT AL449963.2:153018..153144,AL449963.2:166718..166792, FT AL449963.2:170029..170186,AL449963.2:188414..188525, FT AL449963.2:192710..192848,AL449963.2:206632..206682, FT AL449963.2:211087..211291,AL449963.2:212587..212734, FT 18684714..18684955) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-001" FT /product="ADAMTS-like 1" FT /note="match: cDNAs: Em:AF176313.1 Em:AY358327.1" FT /note="match: ESTs: Em:AA284278.1 Em:BF510853.1 FT Em:BI523618.1 Em:CD636820.1 Em:DA575243.1 Em:W47029.1 FT Em:W47220.1" FT polyA_signal 18684931..18684936 FT polyA_site 18684955 FT mRNA join(18706639..18707046,18721534..18721663, FT AL591423.6:2174..2384,AL591423.6:19478..19657, FT AL591423.6:24619..24772,AL591423.6:25657..26782, FT AL591423.6:44273..44400,AL158150.14:13792..13920, FT AL158150.14:22967..23146,AL158150.14:26526..26660, FT AL158150.14:84514..84726,AL158150.14:86251..86431, FT AL158150.14:89072..89279,AL158150.14:102465..102574, FT AL158150.14:103375..103600,AL158150.14:105130..107633) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-010" FT /product="ADAMTS-like 1" FT /note="match: cDNAs: Em:AK123028.1 Em:AK132420.1 FT Em:BX640951.1" FT /note="match: ESTs: Em:AW665943.1 Em:BF445522.1 FT Em:BM694277.1 Em:BU626040.1 Em:CR740880.1 Em:DA476261.1 FT Em:DA549329.1" FT CDS join(18706668..18707046,18721534..18721663, FT AL591423.6:2174..2384,AL591423.6:19478..19657, FT AL591423.6:24619..24772,AL591423.6:25657..26782, FT AL591423.6:44273..44400,AL158150.14:13792..13920, FT AL158150.14:22967..23146,AL158150.14:26526..26660, FT AL158150.14:84514..84726,AL158150.14:86251..86431, FT AL158150.14:89072..89279,AL158150.14:102465..102574, FT AL158150.14:103375..103600,AL158150.14:105130..105231) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-010" FT /standard_name="OTTHUMP00000194938" FT /product="ADAMTS-like 1" FT /note="match: proteins: Tr:Q6MZQ3.1" FT /protein_id="CAM20931.1" FT /translation="MQPLTAPMASCLGLLILSSCLLADCRFIPEAWSACTVTCGVGTQV FT RIVRCQVLLSFSQSVADLPIDECEGPKPASQRACYAGPCSGEIPEFNPDETDGLFGGLQ FT DFDELYDWEYEGFTKCSESCGGGVQEAVVSCLNKQTREPAEENLCVTSRRPPQLLKSCN FT LDPCPARWEIGKWSPCSLTCGVGLQTRDVFCSHLLSREMNETVILADELCRQPKPSTVQ FT ACNRFNCPPAWYPAQWQPCSRTCGGGVQKREVLCKQRMADGSFLELPETFCSASKPACQ FT QACKKDDCPSEWLLSDWTECSTSCGEGTQTRSAICRKMLKTGLSTVVNSTLCPPLPFSS FT SIRPCMLATCARPGRPSTKHSPHIAAARKVYIQTRRQRKLHFVVGGFAYLLPKTAVVLR FT CPARRVRKPLITWEKDGQHLISSTHVTVAPFGYLKIHRLKPSDAGVYTCSAGPAREHFV FT IKLIGGNRKLVARPLSPRSEEEVLAGRKGGPKEALQTHKHQNGIFSNGSKAEKRGLAAN FT PGSRYDDLVSRLLEQGGWPGELLASWEAQDSAERNTTSEEDPGAEQVLLHLPFTMVTEQ FT RRLDDILGNLSQQPEELRDLYSKHLVAQLAQEIFRSHLEHQDTLLKPSERRTSPVTLSP FT HKHVSGFSSSLRTSSTGDAGGGSRRPHRKPTILRKISAAQQLSASEVVTHLGQTVALAS FT GTLSVLLHCEAIGHPRPTISWARNGEEVQFSDRILLQPDDSLQILAPVEADVGFYTCNA FT TNALGYDSVSIAVTLAGKPLVKTSRMTVINTEKPAVTVDIGSTIKTVQGVNVTINCQVA FT GVPEAEVTWFRNKSKLGSPHHLHEGSLLLTNVSSSDQGLYSCRAANLHGELTESTQLLI FT LDPPQVPTQLEDIRALLAATGPNLPSVLTSPLGTQLVLDPGNSALLGCPIKGHPVPNIT FT WFHGGQPIVTATGLTHHILAAGQILQVANLSGGSQGEFSCLAQNEAGVLMQKASLVIQD FT YWWSVDRLATCSASCGNRGVQQPRLRCLLNSTEVNPAHCAGKVRPAVQPIACNRRDCPS FT RWMVTSWSACTRSCGGGVQTRRVTCQKLKASGISTPVSNDMCTQVAKRPVDTQACNQQL FT CVEWAFSSWGQCNGPCIGPHLAVQHRQVFCQTRDGITLPSEQCSALPRPVSTQNCWSEA FT CSVHWRVSLWTLCTATCGNYGFQSRRVECVHARTNKAVPEHLCSWGPRPANWQRCNITP FT CENSMCRDTTRYCEKVKQLKLCQLSQFKSRCCGTCGKA" FT CDS complement(18717976..18718525) FT /pseudo FT /locus_tag="RP11-503K16.2-001" FT /product="ras-related protein family pseudogene" FT /note="match: proteins: Sw:P61223 Sw:P61224 Sw:P62834 FT Sw:P62836 Sw:Q62636 Tr:P87494 Tr:Q9BXV4 Tr:Q9YH37" FT polyA_signal 18723895..18723900 FT polyA_site 18723915 FT CDS join(AL449963.2:<166754..166792,AL449963.2:170029..170186, FT AL449963.2:188414..188525,AL449963.2:192710..192848, FT AL449963.2:206632..206682,AL449963.2:211087..211291, FT AL449963.2:212587..212734,18684714..18684798, FT 18706745..18707046,18721534..18721663,18723016..18723061) FT /codon_start=3 FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-005" FT /standard_name="OTTHUMP00000021088" FT /product="ADAMTS-like 1" FT /protein_id="CAI14853.2" FT /translation="HIRLVLKGPDHLYLETKTLQGTKGENSLSSTGTFLVDNSSVDFQK FT FPDKEILRMAGPLTADFIVKIRNSGSADSTVQFIFYQPIIHRWRETDFFPCSATCGGGY FT QLTSAECYDLRSNRVVADQYCHYYPENIKPKPKLQECNLDPCPASDGYKQIMPYDLYHP FT LPRWEATPWTACSSSCGGGIQSRAVSCVEEDIQGHVTSVEEWKCMYTPKMPIAQPCNIF FT DCPKWLAQEWSPCTVTCGQGLRYRVVLCIDHRGMHTGGCSPKTKPHIKEECIVPTPCYK FT PKEKLPVEAKLPWFKQAQELEEGAAVSEEPSFIPEAWSACTVTCGVGTQVRIVRCQVLL FT SFSQSVADLPIDECEGPKPASQRACYAGPCSGEIPEFNPDETDGLFGGLQDFDELYDWE FT YEGFTKCSESCGGGVQEAVVSCLNKQTREPAEENLCVTSRRPPQLLKSCNLDPCPARSS FT IDSAWNACNVLC" FT mRNA join(AL449963.2:<166754..166792,AL449963.2:170029..170186, FT AL449963.2:188414..188525,AL449963.2:192710..192848, FT AL449963.2:206632..206682,AL449963.2:211087..211291, FT AL449963.2:212587..212734,18684714..18684798, FT 18706745..18707046,18721534..18721663,18723016..18723262) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-005" FT /product="ADAMTS-like 1" FT /note="match: cDNAs: Em:AF251058.1" FT /note="match: ESTs: Em:BF932251.1 Em:BM476141.1" FT misc_feature 18805316..18971326 FT /note="annotated region of clone" FT misc_feature 18823629..18823706 FT /note="Sequence confirmed by AC011701 sequenced by BCM" FT mRNA join(18826136..18826461,18829841..18829975, FT 18887829..18888041,18889566..18889746,18905780..18905889, FT 18906690..18906910,18908440..18910948) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-008" FT /product="ADAMTS-like 1" FT /note="match: ESTs: Em:AA428992.1 Em:AA722406.1 FT Em:AI803088.1 Em:AI985301.1 Em:AW120520.1 Em:AW665943.1 FT Em:AW771304.1 Em:BB193444.2 Em:BE048107.1 Em:BE880877.1 FT Em:BF218304.1 Em:BF508137.1 Em:BM694277.1 Em:BQ014789.1 FT Em:BU626040.1 Em:BU730395.1 Em:H99933.1" FT /note="match: cDNAs: Em:AK092602.1 Em:AX747624.1" FT mRNA join(18826146..18826461,18829841..18829975, FT 18887829..18888041,18905780..18905889,18906690..18906910, FT 18908440..18908607) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-009" FT /product="ADAMTS-like 1" FT /note="match: cDNAs: Em:BC100789.2" FT mRNA join(18826146..18826461,18829841..18829975, FT 18887829..18888041,18889566..18889746,18892387..18892594, FT 18905780..18905889,18906690..18906910,18908440..18908607) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-011" FT /product="ADAMTS-like 1" FT /note="match: cDNAs: Em:BC100788.2 Em:BC100790.2" FT CDS join(18826245..18826461,18829841..18829975, FT 18887829..18888041,18905780..18905889,18906690..18906842) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-009" FT /standard_name="OTTHUMP00000194939" FT /product="ADAMTS-like 1" FT /protein_id="CAM14351.1" FT /translation="MSGVFCFFFFFLGVPEAEVTWFRNKSKLGSPHHLHEGSLLLTNVS FT SSDQGLYSCRAANLHGELTESTQLLILDPPQVPTQLEDIRALLAATGPNLPSVLTSPLG FT TQLVLDPGNSALLGCPIKGHPVPNITWFHGGQPIVTATGLTHHILAAGQILQVANLSGG FT SQGEFSCLAQNEAGVLMQKASLVIQVQWALHRASPSCATQTSLLPDTGWHHLTIRAVQC FT SSEACEHPELLVRGLQCTLESQPVDPVHSYLWQLRLPVPACGVCACPHQQGSA" FT CDS join(18826245..18826461,18829841..18829975, FT 18887829..18888041,18889566..18889746,18892387..18892594, FT 18905780..18905889,18906690..18906910,18908440..18908546) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-011" FT /standard_name="OTTHUMP00000196658" FT /product="ADAMTS-like 1" FT /protein_id="CAO03592.1" FT /translation="MSGVFCFFFFFLGVPEAEVTWFRNKSKLGSPHHLHEGSLLLTNVS FT SSDQGLYSCRAANLHGELTESTQLLILDPPQVPTQLEDIRALLAATGPNLPSVLTSPLG FT TQLVLDPGNSALLGCPIKGHPVPNITWFHGGQPIVTATGLTHHILAAGQILQVANLSGG FT SQGEFSCLAQNEAGVLMQKASLVIQDYWWSVDRLATCSASCGNRGVQQPRLRCLLNSTE FT VNPAHCAGKVRPAVQPIACNRRDCPSRWMVTSWSACTRSCGGGVQTRRVTCQKLKASGI FT STPVSNDMCTQVAKRPVDTQACNQQLCVEWAFSSWGQCNGPCIGPHLAVQHRQVFCQTR FT DGITLPSEQCSALPRPVSTQNCWSEACSVHWRVSLWTLCTATCGNYGFQSRRVECVHAR FT TNKAVPEHLCSWGPRPANWQRCNITPCENMECRDTTRYCEKVKQLKLCQLSQFKSRCCG FT TCGKA" FT misc_feature 18852028..18852238 FT /note="Sequence confirmed by AC011701 sequenced by BCM" FT misc_feature 18852239..18852691 FT /note="Sequence from AC011701 sequenced by BCM" FT misc_feature 18852692..18852844 FT /note="Sequence confirmed by AC011701 sequenced by BCM" FT misc_feature 18860043 FT /note="Clone_left_end: RP11-296P7" FT mRNA complement(join(18927656..18929053,18941635..18941837, FT 18950756..18950935,AL356000.13:63543..63860)) FT /gene="FAM154A" FT /locus_tag="RP11-220B22.3-001" FT /product="family with sequence similarity 154, member A" FT /note="match: ESTs: Em:AA397758.1 Em:AA490023.1 FT Em:AA629329.1 Em:AA758280.1 Em:AA774548.1 Em:AA992255.1 FT Em:AI014701.1 Em:AI208210.1 Em:AI808568.1 Em:AW079914.1 FT Em:AW274676.1 Em:BI462463.1 Em:BI826610.1 Em:BI831917.1 FT Em:BM563230.1" FT /note="match: cDNAs: Em:AK015673.1" FT CDS complement(join(18928050..18929053,18941635..18941837, FT 18950756..18950935,AL356000.13:63543..63580)) FT /gene="FAM154A" FT /locus_tag="RP11-220B22.3-001" FT /standard_name="OTTHUMP00000021090" FT /product="family with sequence similarity 154, member A" FT /protein_id="CAH71465.1" FT /translation="MKTKCICELCSCGRHHCPHLPTKIYDKTEKPCLLSEYTENYPFYH FT SYLPRESFKPRREYQKGPIPMEGLTTSRRDFGPHKVAPVKVHQYDQFVPSEENMDLLTT FT YKKDYNPYPVCRVDPIKPRDSKYPCSDKMECLPTYKADYLPWNQPRREPLRLEHKYQPA FT SVRFDNRTTHQDDYPIKGLVKTISCKPLAMPKLCNIPLEDVTNYKMSYVAHPVEKRFVH FT EAEKFRPCEIPFESLTTQKQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAW FT PMPRMFSKAPITYVPPEDRMDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTT FT KDDYKQWSSMRTEPVKPVPQLDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGN FT VPVESQTTYTISFTPKEMGRCLASYPEPPGYTFEEVDALGHRIYKPVSQAGSQQSSHLS FT VDDSENPNQRELEVLA" FT mRNA complement(join(18927890..18929053,18950756..18950935, FT AL356000.13:63543..63925)) FT /gene="FAM154A" FT /locus_tag="RP11-220B22.3-002" FT /product="family with sequence similarity 154, member A" FT /note="match: cDNAs: Em:AK057474.1" FT CDS complement(join(18929050..18929053,18950756..18950935, FT AL356000.13:63543..63580)) FT /gene="FAM154A" FT /locus_tag="RP11-220B22.3-002" FT /standard_name="OTTHUMP00000021091" FT /product="family with sequence similarity 154, member A" FT /protein_id="CAH71466.2" FT /translation="MKTKCICELCSCGRHHCPHLPTKIYDKTEKPCLLSEYTENYPFYH FT SYLPRESFKPRREYQKGPIPMEGLTTSS" FT mRNA join(18905489..18905889,18906690..18910948) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-007" FT /product="ADAMTS-like 1" FT /note="match: cDNAs: Em:AK128724.1" FT /note="match: ESTs: Em:DB288843.1" FT polyA_signal 18910273..18910278 FT polyA_site 18910293 FT polyA_signal 18910928..18910933 FT polyA_site 18910948 FT mRNA join(AL353895.4:116680..117087,AL353895.4:131575..131704, FT AL591423.6:2174..2384,AL591423.6:19478..19657, FT AL591423.6:24619..24772,AL591423.6:25657..26782, FT AL591423.6:44273..44400,18817107..18817235, FT 18826282..18826461,18829841..18829975,18887829..18888041, FT 18889566..18889746,18892387..18892594,18905780..18905889, FT 18906690..18906915,18908445..18910948) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-010" FT /product="ADAMTS-like 1" FT /note="match: cDNAs: Em:AK123028.1 Em:AK132420.1 FT Em:BX640951.1" FT /note="match: ESTs: Em:AW665943.1 Em:BF445522.1 FT Em:BM694277.1 Em:BU626040.1 Em:CR740880.1 Em:DA476261.1 FT Em:DA549329.1" FT CDS join(AL353895.4:116709..117087,AL353895.4:131575..131704, FT AL591423.6:2174..2384,AL591423.6:19478..19657, FT AL591423.6:24619..24772,AL591423.6:25657..26782, FT AL591423.6:44273..44400,18817107..18817235, FT 18826282..18826461,18829841..18829975,18887829..18888041, FT 18889566..18889746,18892387..18892594,18905780..18905889, FT 18906690..18906915,18908445..18908546) FT /gene="ADAMTSL1" FT /locus_tag="RP11-503K16.1-010" FT /standard_name="OTTHUMP00000194938" FT /product="ADAMTS-like 1" FT /note="match: proteins: Tr:Q6MZQ3.1" FT /protein_id="CAM14352.1" FT /translation="MQPLTAPMASCLGLLILSSCLLADCRFIPEAWSACTVTCGVGTQV FT RIVRCQVLLSFSQSVADLPIDECEGPKPASQRACYAGPCSGEIPEFNPDETDGLFGGLQ FT DFDELYDWEYEGFTKCSESCGGGVQEAVVSCLNKQTREPAEENLCVTSRRPPQLLKSCN FT LDPCPARWEIGKWSPCSLTCGVGLQTRDVFCSHLLSREMNETVILADELCRQPKPSTVQ FT ACNRFNCPPAWYPAQWQPCSRTCGGGVQKREVLCKQRMADGSFLELPETFCSASKPACQ FT QACKKDDCPSEWLLSDWTECSTSCGEGTQTRSAICRKMLKTGLSTVVNSTLCPPLPFSS FT SIRPCMLATCARPGRPSTKHSPHIAAARKVYIQTRRQRKLHFVVGGFAYLLPKTAVVLR FT CPARRVRKPLITWEKDGQHLISSTHVTVAPFGYLKIHRLKPSDAGVYTCSAGPAREHFV FT IKLIGGNRKLVARPLSPRSEEEVLAGRKGGPKEALQTHKHQNGIFSNGSKAEKRGLAAN FT PGSRYDDLVSRLLEQGGWPGELLASWEAQDSAERNTTSEEDPGAEQVLLHLPFTMVTEQ FT RRLDDILGNLSQQPEELRDLYSKHLVAQLAQEIFRSHLEHQDTLLKPSERRTSPVTLSP FT HKHVSGFSSSLRTSSTGDAGGGSRRPHRKPTILRKISAAQQLSASEVVTHLGQTVALAS FT GTLSVLLHCEAIGHPRPTISWARNGEEVQFSDRILLQPDDSLQILAPVEADVGFYTCNA FT TNALGYDSVSIAVTLAGKPLVKTSRMTVINTEKPAVTVDIGSTIKTVQGVNVTINCQVA FT GVPEAEVTWFRNKSKLGSPHHLHEGSLLLTNVSSSDQGLYSCRAANLHGELTESTQLLI FT LDPPQVPTQLEDIRALLAATGPNLPSVLTSPLGTQLVLDPGNSALLGCPIKGHPVPNIT FT WFHGGQPIVTATGLTHHILAAGQILQVANLSGGSQGEFSCLAQNEAGVLMQKASLVIQD FT YWWSVDRLATCSASCGNRGVQQPRLRCLLNSTEVNPAHCAGKVRPAVQPIACNRRDCPS FT RWMVTSWSACTRSCGGGVQTRRVTCQKLKASGISTPVSNDMCTQVAKRPVDTQACNQQL FT CVEWAFSSWGQCNGPCIGPHLAVQHRQVFCQTRDGITLPSEQCSALPRPVSTQNCWSEA FT CSVHWRVSLWTLCTATCGNYGFQSRRVECVHARTNKAVPEHLCSWGPRPANWQRCNITP FT CENSMCRDTTRYCEKVKQLKLCQLSQFKSRCCGTCGKA" FT misc_feature 18969326 FT /note="Clone_right_end: RP11-220B22" FT misc_feature 18971327..19058503 FT /note="annotated region of clone" FT mRNA complement(join(19056616..19058503,AL591206.9:2001..2496, FT AL591206.9:3583..3718,AL591206.9:6503..6688, FT AL591206.9:7009..7075,AL591206.9:13714..13795, FT AL591206.9:20097..20199,AL591206.9:21671..21797, FT AL591206.9:23974..24167,AL591206.9:26368..26538, FT AL591206.9:30229..30277,AL591206.9:30586..30651, FT AL591206.9:32907..33054,AL591206.9:36666..36708)) FT /gene="FAM29A" FT /locus_tag="RP11-296P7.3-002" FT /product="family with sequence similarity 29, member A" FT /note="match: ESTs: Em:AU151074.1 Em:BF130012.1 FT Em:BG395999.1 Em:BM800851.1 Em:BQ000711.1" FT /note="match: cDNAs: Em:AK022964.1" FT CDS complement(join(19057948..19058503,AL591206.9:2001..2496, FT AL591206.9:3583..3718,AL591206.9:6503..6688, FT AL591206.9:7009..7075,AL591206.9:13714..13795, FT AL591206.9:20097..20199,AL591206.9:21671..21797, FT AL591206.9:23974..24167,AL591206.9:26368..26538, FT AL591206.9:30229..30277,AL591206.9:30586..30651, FT AL591206.9:32907..33054,AL591206.9:36666..36693)) FT /gene="FAM29A" FT /locus_tag="RP11-296P7.3-002" FT /standard_name="OTTHUMP00000021101" FT /product="family with sequence similarity 29, member A" FT /note="match: proteins: Sw:Q7Z4H7" FT /protein_id="CAH72132.1" FT /translation="MKYIKSNSKNSSHHFVETFNIKPQDLHKCIARCHFARSRFLQILQ FT RQDCVTQKYQENAQLSVKQVRNLRSECIGLENQIKKMEPYDDHSNMEEKIQKVRSLWAS FT VNETLMFLEKEREVVSSVLSLVNQYALDGTNVAINIPRLLLDKIEKQMFQLHIGNVYEA FT GKLNLLTVIQLLNEVLKVMKYERCQADQARLTVDLHYLEKETKFQKERLSDLKHMRYRI FT KDDLTTIRHSVVEKQGEWHKKWKEFLGLSPFSLIKGWTPSVDLLPPMSPLSFDPASEEV FT YAKSILCQYPASLPDAHKQHNQENGCRGDSDTLGALHDLANSPASFLSQSVSSSDRNSV FT TVLEKDTKMGTPKEKNEAISKKIPEFEVENSPLSDVAKNTESSAFGGSLPAKKSDPFQK FT EQDHLVEEVARAVLSDSPQLSEGKEIKLEELIDSLGSNPFLTRNQIPRTPENLITEIRS FT SWRKAIEMEENRTKEPIQMDAEHREVLPESLPVLHNQREFSMADFLLETTVSDFGQSHL FT TEEKVISDCECVPQKHVLTSHIDEPPTQNQSDLLNKKVICKQDLECLAFTKLSETSRME FT TFSPAVGNRIDVMGGSEEEFMKILDHLEVSCNKPSTNKTMLWNSFQISSGISSKSFKDN FT DFGILHETLPEEVGHLSFNSSSSSEANFKLEPNSPMHGGTLLEDVVGGRQTTPESDFNL FT QALRSRYEALKKSLSKKREESYLSNSQTPERHKPELSPTPQNVQTDDTLNFLDTCDLHT FT EHIKPSLRTSIGERKRSLSPLIKFSPVEQRLRTTIACSLGELPNLKGKV" FT misc_feature 19015277..19015285 FT /note="1329 bases of Tn10 transposon (J01829) removed here. FT This sequence represents the duplicated flanking sequence FT of the Tn10" FT mRNA complement(join(19053141..19056402,19057959..19058503, FT AL591206.9:2001..2496,AL591206.9:3583..3718, FT AL591206.9:6503..6688,AL591206.9:7009..7075, FT AL591206.9:13714..13795,AL591206.9:20097..20199, FT AL591206.9:21671..21797,AL591206.9:23974..24167, FT AL591206.9:26368..26538,AL591206.9:30229..30277, FT AL591206.9:30586..30651,AL591206.9:32907..33054, FT AL591206.9:36666..36798,AL591206.9:37812..37890, FT AL591206.9:40169..40264,AL591206.9:46019..46614)) FT /gene="FAM29A" FT /locus_tag="RP11-296P7.3-001" FT /product="family with sequence similarity 29, member A" FT /note="match: ESTs: Em:AA205015.1 Em:AI743579.1 FT Em:AI769453.1 Em:AL700868.1 Em:AU128850.1 Em:AU130222.1 FT Em:AU133040.1 Em:AW189076.1 Em:AW975377.1 Em:BE327748.1 FT Em:BF108420.1 Em:BF185167.1 Em:BF334607.1 Em:BF343011.1 FT Em:BF570673.1 Em:BF691731.1 Em:BF882243.1 Em:BF984175.1 FT Em:BG011295.1 Em:BG106611.1 Em:BG163699.1 Em:BG167700.1 FT Em:BG256236.1 Em:BG390135.1 Em:BG548005.1 Em:BG575122.1 FT Em:BG576084.1 Em:BI014651.1 Em:BI087631.1 Em:BI463635.1 FT Em:BI856951.1 Em:BI858027.1 Em:BI862098.1 Em:BM015533.1 FT Em:BM904424.1 Em:BQ422992.1 Em:BQ921432.1 Em:BQ961552.1" FT /note="match: cDNAs: Em:AB046794.1 Em:AF533709.1 FT Em:AF537091.1 Em:AK000067.1 Em:AK023068.1 Em:AK056458.1 FT Em:AL832495.1 Em:BC010632.1 Em:BC026178.1" FT CDS complement(join(19056341..19056402,19057959..19058503, FT AL591206.9:2001..2496,AL591206.9:3583..3718, FT AL591206.9:6503..6688,AL591206.9:7009..7075, FT AL591206.9:13714..13795,AL591206.9:20097..20199, FT AL591206.9:21671..21797,AL591206.9:23974..24167, FT AL591206.9:26368..26538,AL591206.9:30229..30277, FT AL591206.9:30586..30651,AL591206.9:32907..33054, FT AL591206.9:36666..36798,AL591206.9:37812..37890, FT AL591206.9:40169..40264,AL591206.9:46019..46146)) FT /gene="FAM29A" FT /locus_tag="RP11-296P7.3-001" FT /standard_name="OTTHUMP00000021100" FT /product="family with sequence similarity 29, member A" FT /note="match: proteins: Sw:Q7Z4H7" FT /protein_id="CAH72133.1" FT /translation="MSSASVTAFEKEHLWMYLQALGFEPGPATIACGKIVSHTHLGVNM FT FDKLNRDAFHIISYFLFQVLDQSLTKEVFKFCWPPFDQKSDTEFRKHCCEWIKRISGEC FT GSSFPQVVGSLFLSPGGPKFIHLMYHFARFVAMKYIKSNSKNSSHHFVETFNIKPQDLH FT KCIARCHFARSRFLQILQRQDCVTQKYQENAQLSVKQVRNLRSECIGLENQIKKMEPYD FT DHSNMEEKIQKVRSLWASVNETLMFLEKEREVVSSVLSLVNQYALDGTNVAINIPRLLL FT DKIEKQMFQLHIGNVYEAGKLNLLTVIQLLNEVLKVMKYERCQADQARLTVDLHYLEKE FT TKFQKERLSDLKHMRYRIKDDLTTIRHSVVEKQGEWHKKWKEFLGLSPFSLIKGWTPSV FT DLLPPMSPLSFDPASEEVYAKSILCQYPASLPDAHKQHNQENGCRGDSDTLGALHDLAN FT SPASFLSQSVSSSDRNSVTVLEKDTKMGTPKEKNEAISKKIPEFEVENSPLSDVAKNTE FT SSAFGGSLPAKKSDPFQKEQDHLVEEVARAVLSDSPQLSEGKEIKLEELIDSLGSNPFL FT TRNQIPRTPENLITEIRSSWRKAIEMEENRTKEPIQMDAEHREVLPESLPVLHNQREFS FT MADFLLETTVSDFGQSHLTEEKVISDCECVPQKHVLTSHIDEPPTQNQSDLLNKKVICK FT QDLECLAFTKLSETSRMETFSPAVGNRIDVMGGSEEEFMKILDHLEVSCNKPSTNKTML FT WNSFQISSGISSKSFKDNDFGILHETLPEEVGHLSFNSSSSSEANFKLEPNSPMHGGTL FT LEDVVGGRQTTPESDFNLQALRSRYEALKKSLSKKREESYLSNSQTPERHKPELSPTPQ FT NVQTDDTLNFLDTCDLHTEHIKPSLRTSIGERKRSLSPLIKFSPVEQRLRTTIACSLGE FT LPNLKEEDILNKSLDAKEPPSDLTR" FT CDS 19026890..19028127 FT /pseudo FT /locus_tag="RP11-296P7.4-001" FT /product="proteasome (prosome, macropain) 26S subunit, FT ATPase, 3 (PSMC3) pseudogene" FT /note="match: proteins: Sw:O42587 Sw:O88685 Sw:P17980 FT Sw:Q63569 Tr:Q93V77 Tr:Q99JN8" FT polyA_signal 19028173..19028178 FT mRNA complement(join(AL158150.14:124341..125738, FT AL158150.14:138320..138522,AL158150.14:147441..147620, FT 19032869..19033186)) FT /gene="FAM154A" FT /locus_tag="RP11-220B22.3-001" FT /product="family with sequence similarity 154, member A" FT /note="match: ESTs: Em:AA397758.1 Em:AA490023.1 FT Em:AA629329.1 Em:AA758280.1 Em:AA774548.1 Em:AA992255.1 FT Em:AI014701.1 Em:AI208210.1 Em:AI808568.1 Em:AW079914.1 FT Em:AW274676.1 Em:BI462463.1 Em:BI826610.1 Em:BI831917.1 FT Em:BM563230.1" FT /note="match: cDNAs: Em:AK015673.1" FT CDS complement(join(AL158150.14:124735..125738, FT AL158150.14:138320..138522,AL158150.14:147441..147620, FT 19032869..19032906)) FT /gene="FAM154A" FT /locus_tag="RP11-220B22.3-001" FT /standard_name="OTTHUMP00000021090" FT /product="family with sequence similarity 154, member A" FT /protein_id="CAH72135.1" FT /translation="MKTKCICELCSCGRHHCPHLPTKIYDKTEKPCLLSEYTENYPFYH FT SYLPRESFKPRREYQKGPIPMEGLTTSRRDFGPHKVAPVKVHQYDQFVPSEENMDLLTT FT YKKDYNPYPVCRVDPIKPRDSKYPCSDKMECLPTYKADYLPWNQPRREPLRLEHKYQPA FT SVRFDNRTTHQDDYPIKGLVKTISCKPLAMPKLCNIPLEDVTNYKMSYVAHPVEKRFVH FT EAEKFRPCEIPFESLTTQKQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAW FT PMPRMFSKAPITYVPPEDRMDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTT FT KDDYKQWSSMRTEPVKPVPQLDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGN FT VPVESQTTYTISFTPKEMGRCLASYPEPPGYTFEEVDALGHRIYKPVSQAGSQQSSHLS FT VDDSENPNQRELEVLA" FT mRNA complement(join(AL158150.14:124575..125738, FT AL158150.14:147441..147620,19032869..19033251)) FT /gene="FAM154A" FT /locus_tag="RP11-220B22.3-002" FT /product="family with sequence similarity 154, member A" FT /note="match: cDNAs: Em:AK057474.1" FT CDS complement(join(AL158150.14:125735..125738, FT AL158150.14:147441..147620,19032869..19032906)) FT /gene="FAM154A" FT /locus_tag="RP11-220B22.3-002" FT /standard_name="OTTHUMP00000021091" FT /product="family with sequence similarity 154, member A" FT /protein_id="CAM16096.1" FT /translation="MKTKCICELCSCGRHHCPHLPTKIYDKTEKPCLLSEYTENYPFYH FT SYLPRESFKPRREYQKGPIPMEGLTTSS" FT misc_feature 19034975 FT /note="Clone_left_end: RP11-151J10" FT mRNA 19049393..19050981 FT /gene="RRAGA" FT /locus_tag="RP11-296P7.1-001" FT /product="Ras-related GTP binding A" FT /note="match: ESTs: Em:AA158708.1 Em:AL545593.1 FT Em:AW027726.1 Em:BM809746.1 Em:BM924216.1 Em:BQ010170.1 FT Em:BQ271079.1 Em:BQ441012.1 Em:BQ901094.1 Em:BQ943648.1" FT /note="match: cDNAs: Em:AK004955.1 Em:BC006433.1 FT Em:BC009990.1 Em:U41654.1 Em:X85183.1 Em:X90529.1" FT CDS 19049658..19050599 FT /gene="RRAGA" FT /locus_tag="RP11-296P7.1-001" FT /standard_name="OTTHUMP00000021099" FT /product="Ras-related GTP binding A" FT /note="match: proteins: Sw:Q63486 Sw:Q7L523 Tr:Q9VHJ4" FT /protein_id="CAH72136.1" FT /translation="MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDV FT EHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMH FT YYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTS FT IWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQ FT RDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSI FT PSAATLINIRNARKHFEKLERVDGPKHSLLMR" FT polyA_signal 19050960..19050965 FT polyA_site 19050981 FT polyA_site complement(19053141) FT polyA_signal complement(19053153..19053158) FT misc_feature 19056503 FT /note="Clone_right_end: RP11-296P7" FT polyA_site complement(19056616) FT misc_feature 19058504..19187216 FT /note="annotated region of clone" FT CDS complement(join(<19058762..19058999,19060086..19060221, FT 19063006..19063182)) FT /gene="FAM29A" FT /locus_tag="RP11-296P7.3-003" FT /standard_name="OTTHUMP00000021102" FT /product="family with sequence similarity 29, member A" FT /protein_id="CAI12262.1" FT /translation="MGTPKEKNEAISKKIPEFEVENSPLSDVAKNTESSAFGGSLPAKK FT SDPFQKEQDHLVEEVARAVLSDSPQLSEGKEIKLEELIDSLGSNPFLTRNQIPRTPENL FT ITEIRSSWRKAIEMEENRTKEPIQMDAEHREVLPESLPVLHNQREFSMADFLLETTVSD FT FGQSHLTEEKVISDCECVPQ" FT mRNA complement(join(<19058762..19058999,19060086..19060221, FT 19063006..19063191,19063512..19063578,19065030..19065082)) FT /gene="FAM29A" FT /locus_tag="RP11-296P7.3-003" FT /product="family with sequence similarity 29, member A" FT /note="match: ESTs: Em:BG721235.1" FT mRNA complement(join(AL356000.13:87290..89177, FT 19058504..19058999,19060086..19060221,19063006..19063191, FT 19063512..19063578,19070217..19070298,19076600..19076702, FT 19078174..19078300,19080477..19080670,19082871..19083041, FT 19086732..19086780,19087089..19087154,19089410..19089557, FT 19093169..19093211)) FT /gene="FAM29A" FT /locus_tag="RP11-296P7.3-002" FT /product="family with sequence similarity 29, member A" FT /note="match: ESTs: Em:AU151074.1 Em:BF130012.1 FT Em:BG395999.1 Em:BM800851.1 Em:BQ000711.1" FT /note="match: cDNAs: Em:AK022964.1" FT CDS complement(join(AL356000.13:88622..89177, FT 19058504..19058999,19060086..19060221,19063006..19063191, FT 19063512..19063578,19070217..19070298,19076600..19076702, FT 19078174..19078300,19080477..19080670,19082871..19083041, FT 19086732..19086780,19087089..19087154,19089410..19089557, FT 19093169..19093196)) FT /gene="FAM29A" FT /locus_tag="RP11-296P7.3-002" FT /standard_name="OTTHUMP00000021101" FT /product="family with sequence similarity 29, member A" FT /note="match: proteins: Sw:Q7Z4H7" FT /protein_id="CAI12263.1" FT /translation="MKYIKSNSKNSSHHFVETFNIKPQDLHKCIARCHFARSRFLQILQ FT RQDCVTQKYQENAQLSVKQVRNLRSECIGLENQIKKMEPYDDHSNMEEKIQKVRSLWAS FT VNETLMFLEKEREVVSSVLSLVNQYALDGTNVAINIPRLLLDKIEKQMFQLHIGNVYEA FT GKLNLLTVIQLLNEVLKVMKYERCQADQARLTVDLHYLEKETKFQKERLSDLKHMRYRI FT KDDLTTIRHSVVEKQGEWHKKWKEFLGLSPFSLIKGWTPSVDLLPPMSPLSFDPASEEV FT YAKSILCQYPASLPDAHKQHNQENGCRGDSDTLGALHDLANSPASFLSQSVSSSDRNSV FT TVLEKDTKMGTPKEKNEAISKKIPEFEVENSPLSDVAKNTESSAFGGSLPAKKSDPFQK FT EQDHLVEEVARAVLSDSPQLSEGKEIKLEELIDSLGSNPFLTRNQIPRTPENLITEIRS FT SWRKAIEMEENRTKEPIQMDAEHREVLPESLPVLHNQREFSMADFLLETTVSDFGQSHL FT TEEKVISDCECVPQKHVLTSHIDEPPTQNQSDLLNKKVICKQDLECLAFTKLSETSRME FT TFSPAVGNRIDVMGGSEEEFMKILDHLEVSCNKPSTNKTMLWNSFQISSGISSKSFKDN FT DFGILHETLPEEVGHLSFNSSSSSEANFKLEPNSPMHGGTLLEDVVGGRQTTPESDFNL FT QALRSRYEALKKSLSKKREESYLSNSQTPERHKPELSPTPQNVQTDDTLNFLDTCDLHT FT EHIKPSLRTSIGERKRSLSPLIKFSPVEQRLRTTIACSLGELPNLKGKV" FT misc_feature 19102238..19102344 FT /note="Sequence from uni-directional dGTP big dye FT terminator reads only" FT mRNA complement(join(AL356000.13:83815..87076, FT AL356000.13:88633..89177,19058504..19058999, FT 19060086..19060221,19063006..19063191,19063512..19063578, FT 19070217..19070298,19076600..19076702,19078174..19078300, FT 19080477..19080670,19082871..19083041,19086732..19086780, FT 19087089..19087154,19089410..19089557,19093169..19093301, FT 19094315..19094393,19096672..19096767,19102522..19103117)) FT /gene="FAM29A" FT /locus_tag="RP11-296P7.3-001" FT /product="family with sequence similarity 29, member A" FT /note="match: ESTs: Em:AA205015.1 Em:AI743579.1 FT Em:AI769453.1 Em:AL700868.1 Em:AU128850.1 Em:AU130222.1 FT Em:AU133040.1 Em:AW189076.1 Em:AW975377.1 Em:BE327748.1 FT Em:BF108420.1 Em:BF185167.1 Em:BF334607.1 Em:BF343011.1 FT Em:BF570673.1 Em:BF691731.1 Em:BF882243.1 Em:BF984175.1 FT Em:BG011295.1 Em:BG106611.1 Em:BG163699.1 Em:BG167700.1 FT Em:BG256236.1 Em:BG390135.1 Em:BG548005.1 Em:BG575122.1 FT Em:BG576084.1 Em:BI014651.1 Em:BI087631.1 Em:BI463635.1 FT Em:BI856951.1 Em:BI858027.1 Em:BI862098.1 Em:BM015533.1 FT Em:BM904424.1 Em:BQ422992.1 Em:BQ921432.1 Em:BQ961552.1" FT /note="match: cDNAs: Em:AB046794.1 Em:AF533709.1 FT Em:AF537091.1 Em:AK000067.1 Em:AK023068.1 Em:AK056458.1 FT Em:AL832495.1 Em:BC010632.1 Em:BC026178.1" FT CDS complement(join(AL356000.13:87015..87076, FT AL356000.13:88633..89177,19058504..19058999, FT 19060086..19060221,19063006..19063191,19063512..19063578, FT 19070217..19070298,19076600..19076702,19078174..19078300, FT 19080477..19080670,19082871..19083041,19086732..19086780, FT 19087089..19087154,19089410..19089557,19093169..19093301, FT 19094315..19094393,19096672..19096767,19102522..19102649)) FT /gene="FAM29A" FT /locus_tag="RP11-296P7.3-001" FT /standard_name="OTTHUMP00000021100" FT /product="family with sequence similarity 29, member A" FT /note="match: proteins: Sw:Q7Z4H7" FT /protein_id="CAI12264.1" FT /translation="MSSASVTAFEKEHLWMYLQALGFEPGPATIACGKIVSHTHLGVNM FT FDKLNRDAFHIISYFLFQVLDQSLTKEVFKFCWPPFDQKSDTEFRKHCCEWIKRISGEC FT GSSFPQVVGSLFLSPGGPKFIHLMYHFARFVAMKYIKSNSKNSSHHFVETFNIKPQDLH FT KCIARCHFARSRFLQILQRQDCVTQKYQENAQLSVKQVRNLRSECIGLENQIKKMEPYD FT DHSNMEEKIQKVRSLWASVNETLMFLEKEREVVSSVLSLVNQYALDGTNVAINIPRLLL FT DKIEKQMFQLHIGNVYEAGKLNLLTVIQLLNEVLKVMKYERCQADQARLTVDLHYLEKE FT TKFQKERLSDLKHMRYRIKDDLTTIRHSVVEKQGEWHKKWKEFLGLSPFSLIKGWTPSV FT DLLPPMSPLSFDPASEEVYAKSILCQYPASLPDAHKQHNQENGCRGDSDTLGALHDLAN FT SPASFLSQSVSSSDRNSVTVLEKDTKMGTPKEKNEAISKKIPEFEVENSPLSDVAKNTE FT SSAFGGSLPAKKSDPFQKEQDHLVEEVARAVLSDSPQLSEGKEIKLEELIDSLGSNPFL FT TRNQIPRTPENLITEIRSSWRKAIEMEENRTKEPIQMDAEHREVLPESLPVLHNQREFS FT MADFLLETTVSDFGQSHLTEEKVISDCECVPQKHVLTSHIDEPPTQNQSDLLNKKVICK FT QDLECLAFTKLSETSRMETFSPAVGNRIDVMGGSEEEFMKILDHLEVSCNKPSTNKTML FT WNSFQISSGISSKSFKDNDFGILHETLPEEVGHLSFNSSSSSEANFKLEPNSPMHGGTL FT LEDVVGGRQTTPESDFNLQALRSRYEALKKSLSKKREESYLSNSQTPERHKPELSPTPQ FT NVQTDDTLNFLDTCDLHTEHIKPSLRTSIGERKRSLSPLIKFSPVEQRLRTTIACSLGE FT LPNLKEEDILNKSLDAKEPPSDLTR" FT polyA_site complement(19115768) FT polyA_signal complement(19115783..19115788) FT mRNA complement(join(19108373..19108745,19116357..19116647, FT 19118319..19118444)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-004" FT /product="adipose differentiation-related protein" FT /note="match: ESTs: Em:AA142916.1 Em:AI658893.1 FT Em:BF439042.1 Em:BF510044.1 Em:BM681855.1" FT CDS complement(join(19116246..19116647,19118319..19118453, FT 19119648..19119829,19120878..19121163,19123563..19123645, FT 19126112..19126307,19126395..19126424)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-007" FT /standard_name="OTTHUMP00000021107" FT /product="adipose differentiation-related protein" FT /note="match: proteins: Sw:P43883 Sw:Q99541 Sw:Q9TUM6 FT Tr:Q541S0 Tr:Q8K3Q8 Tr:Q8WNR8 Tr:Q9CY19 Tr:Q9MZE5" FT /protein_id="CAI12265.1" FT /translation="MASVAVDPQPSVVTRVVNLPLVSSTYDLMSSAYLSTKDQYPYLKS FT VCEMAENGVKTITSVAMTSALPIIQKLEPQIAVANTYACKGLDRIEERLPILNQPSTQI FT VANAKGAVTGAKDAVTTTVTGAKDSVASTITGVMDKTKGAVTGSVEKTKSVVSGSINTV FT LGSRMMQLVSSGVENALTKSELLVEQYLPLTEEELEKEAKKVEGFDLVQKPSYYVRLGS FT LSTKLHSRAYQQALSRVKEAKQKSQQTISQLHSTVHLIEFARKNVYSANQKIQDAQDKL FT YLSWVEWKRSIGYDDTDESHCAEHIESRTLAIARNLTQQLQTTCHTLLSNIQGVPQNIQ FT DQAKHMGVMAGDIYSVFRNAASFKEVSDSLLTSSKGQLQKMKESLDDVMDYLVNNTPLN FT WLVGPFYPQLTESQNAQDQGAEMDKSSQETQRSEHKTH" FT CDS complement(join(<19121098..19121163,19123563..19123645, FT 19126112..19126307,19126395..19126424)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-005" FT /standard_name="OTTHUMP00000021106" FT /product="adipose differentiation-related protein" FT /protein_id="CAI12266.1" FT /translation="MASVAVDPQPSVVTRVVNLPLVSSTYDLMSSAYLSTKDQYPYLKS FT VCEMAENGVKTITSVAMTSALPIIQKLEPQIAVANTYACKGLDRIEERLPILNQPSTQI FT VANAKGAVTGAKDAVTTTVTG" FT CDS complement(join(19123403..19123474,19123563..19123645, FT 19126112..19126307,19126395..19126424)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-002" FT /standard_name="OTTHUMP00000021104" FT /product="adipose differentiation-related protein" FT /protein_id="CAI12267.1" FT /translation="MASVAVDPQPSVVTRVVNLPLVSSTYDLMSSAYLSTKDQYPYLKS FT VCEMAENGVKTITSVAMTSALPIIQKLEPQIAVANTYACKGLDRIEERLPILNQPSTQA FT NTCFPNLDLDVCLKNNGHFLTS" FT CDS complement(join(19123539..19123645,19126112..19126307, FT 19126395..19126424)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-003" FT /standard_name="OTTHUMP00000021105" FT /product="adipose differentiation-related protein" FT /protein_id="CAI12268.1" FT /translation="MASVAVDPQPSVVTRVVNLPLVSSTYDLMSSAYLSTKDQYPYLKS FT VCEMAENGVKTITSVAMTSALPIIQKLEPQIAVANTYACKGLDRIEERLPILNQPSTQV FT SLGQKC" FT mRNA complement(join(19115768..19116647,19118319..19118453, FT 19119648..19119829,19120878..19121163,19123563..19123645, FT 19126112..19126307,19126395..19126446,19127417..19127574)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-007" FT /product="adipose differentiation-related protein" FT /note="match: ESTs: Em:AA557175.1 Em:AL532098.1 FT Em:AL576919.1 Em:AL579849.1 Em:AU124772.1 Em:AV602770.1 FT Em:AV613945.1 Em:AV614886.1 Em:AW731865.1 Em:BE273318.1 FT Em:BE311586.1 Em:BE483235.1 Em:BE846126.1 Em:BF384467.1 FT Em:BG674831.1 Em:BI455905.1 Em:BI649322.1 Em:BI905337.1 FT Em:BI914249.1 Em:BM460476.1 Em:BM927689.1 Em:BM980821.1 FT Em:BQ003999.1 Em:BQ012667.1 Em:BQ646747.1 Em:BQ647465.1 FT Em:BQ650781.1" FT /note="match: cDNAs: Em:AF234676.1 Em:AF443203.1 FT Em:AJ011680.1 Em:AK002911.1 Em:AK011014.1 Em:AY035850.1 FT Em:AY035851.1 Em:BC005127.1 Em:BC025012.1 Em:M93275.1 FT Em:X97324.1" FT mRNA complement(join(19123233..19123474,19123563..19123645, FT 19126112..19126307,19126395..19126446,19127417..19127474)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-002" FT /product="adipose differentiation-related protein" FT /note="match: ESTs: Em:BG323841.1 Em:BG421101.1" FT mRNA complement(join(19123311..19123645,19126112..19126307, FT 19126395..19126446,19127417..19127488)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-003" FT /product="adipose differentiation-related protein" FT /note="match: ESTs: Em:BG570032.1" FT mRNA complement(join(19125631..19126307,19126395..19126446, FT 19127417..19127488)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-001" FT /product="adipose differentiation-related protein" FT /note="match: ESTs: Em:AL531760.1 Em:AL599333.1" FT mRNA complement(join(19125504..19126446,19127417..19127473)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-008" FT /product="adipose differentiation-related protein" FT /note="match: ESTs: Em:BM923924.1" FT mRNA complement(join(<19121098..19121163,19123563..19123645, FT 19126112..19126307,19126395..19126446,19131213..19131269, FT 19149108..19149276)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-005" FT /product="adipose differentiation-related protein" FT /note="match: ESTs: Em:BI917224.1" FT mRNA complement(join(19129735..19131269,19149108..19149288)) FT /gene="ADFP" FT /locus_tag="RP11-151J10.1-006" FT /product="adipose differentiation-related protein" FT /note="match: ESTs: Em:BG545308.1 Em:BG562600.1" FT /note="match: cDNAs: Em:AK094196.1" FT misc_feature 19158750..19158781 FT /note="Sequence from uni-directional dGTP big dye FT terminator reads only" FT misc_feature 19183217 FT /note="Clone_left_end: RP11-146N23" FT misc_feature 19187217..19322505 FT /note="annotated region of clone" FT CDS complement(19200333..19201044) FT /pseudo FT /locus_tag="RP11-146N23.1-001" FT /product="ribosomal protein S6 (RPS6) pseudogene" FT /note="match: proteins: Sw:O01727 Sw:P47838 Sw:P62753 FT Sw:P62755 Sw:Q90YR8 Sw:Q95V32 Sw:Q9BMX5 Tr:P62754 Tr:P62754 FT Tr:P62754 Tr:P62754 Tr:Q96DV6 Tr:Q9PTD6" FT misc_feature 19209990 FT /note="Clone_right_end: RP11-151J10" FT misc_feature 19236509..19236621 FT /note="Sequence from reads from a short insert library FT derived from a single pUC clone. Restriction digest data FT confirm the assembly. Sequence from uni-directional dGTP FT big dye terminator reads only" FT CDS join(19276173..19276476,19286766..19287006, FT 19288572..19288662,19290699..19290873,19296004..19296241, FT 19298089..19298116,19299226..19299280,19300183..19300324, FT 19305349..19305511,19316425..19316506,19316710..19316824, FT AL391834.8:3855..3999,AL391834.8:5556..5649, FT AL391834.8:7521..7653,AL391834.8:11469..11673, FT AL391834.8:14469..14595,AL391834.8:15765..15987) FT /pseudo FT /locus_tag="RP11-513M16.2-001" FT /product="novel pseudogene" FT /note="match: proteins: Sw:Q7Z401 Tr:O75064 Tr:O96957 FT Tr:Q9TXV4 Tr:Q9TXV4 Tr:Q9W3D2 Tr:Q9W3D3" FT mRNA join(19288622..19288663,19290702..19290874, FT 19296006..19296244,19298054..19298098, FT AL391834.8:30235..30372,AL391834.8:31566..31675, FT AL391834.8:31983..32158,AL391834.8:36465..36647, FT AL391834.8:37458..37653,AL391834.8:39737..39982, FT AL391834.8:41339..41456,AL391834.8:49330..49480, FT AL391834.8:51249..51313,AL391834.8:51530..53770) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-001" FT /product="DENN/MADD domain containing 4C" FT /note="match: cDNAs: Em:AK000693.1" FT /note="match: ESTs: Em:AA454038.1 Em:AU118512.1 FT Em:BE890932.1 Em:BF150767.1 Em:BF450548.1 Em:BF989437.1 FT Em:BG403131.1 Em:BI858648.1 Em:BM474868.1 Em:BM751014.1 FT Em:BM795612.1 Em:BQ553632.1 Em:BQ921044.1" FT mRNA join(19290749..19290874,19296006..19296244, FT 19298054..19298120,19299227..19299285,19300185..19300329, FT 19305350..19305525,19316415..19316515,19316619..19316837, FT AL391834.8:3855..4000,AL391834.8:5432..5467, FT AL391834.8:5557..5687,AL391834.8:7523..7655, FT AL391834.8:11471..11677,AL391834.8:14470..14598, FT AL391834.8:15763..15907,AL391834.8:20485..20607, FT AL391834.8:22126..22272,AL391834.8:25414..26579, FT AL391834.8:30195..30372,AL391834.8:31566..31675, FT AL391834.8:31983..32158,AL391834.8:36465..36647, FT AL391834.8:37458..37653,AL391834.8:39737..39982, FT AL391834.8:41339..41456,AL391834.8:49330..49480, FT AL391834.8:51249..51313,AL391834.8:51530..52351) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-005" FT /product="DENN/MADD domain containing 4C" FT /note="match: cDNAs: Em:AK125842.1 Em:AK127734.1" FT /note="match: ESTs: Em:AA525272.1 Em:BF989436.1 FT Em:BG460666.1 Em:BI055102.1 Em:CB520326.1 Em:CB773449.1 FT Em:CN427691.1" FT CDS join(19290782..19290874,19296006..19296244, FT 19298054..19298120,19299227..19299285,19300185..19300329, FT 19305350..19305525,19316415..19316515,19316619..19316837, FT AL391834.8:3855..4000,AL391834.8:5432..5467, FT AL391834.8:5557..5687,AL391834.8:7523..7655, FT AL391834.8:11471..11677,AL391834.8:14470..14598, FT AL391834.8:15763..15907,AL391834.8:20485..20607, FT AL391834.8:22126..22272,AL391834.8:25414..26579, FT AL391834.8:30195..30372,AL391834.8:31566..31675, FT AL391834.8:31983..32158,AL391834.8:36465..36647, FT AL391834.8:37458..37653,AL391834.8:39737..39982, FT AL391834.8:41339..41456,AL391834.8:49330..49480, FT AL391834.8:51249..51313,AL391834.8:51530..51666) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-005" FT /standard_name="OTTHUMP00000038918" FT /product="DENN/MADD domain containing 4C" FT /note="match: proteins: Sw:Q5VZ89" FT /protein_id="CAH70581.2" FT /translation="MGATIECWDPETKYPLPVFSTFVLTGSSAKKVYGAAIQFYEPYSR FT ELLSEKQLMHLGLLTPVERKMVSKSINTNKCICLLSHWPFFEAFRKFLMFIYKLSVSGP FT HPLPIEKHISHFMQNIPFPSPQRPRILVQLSVHDALILSQPVSTPLPLSGANFSTLLMN FT LGPENCATLLLFVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAA FT VLSAPLPFIVGVDSRYFDLHDPPQDVVCIDLDTNMLYVSDEKKNMNWKQLPKKPCKNLL FT STLKKLYPQLSSVHQKTQEGSAIDMTPIEADFSWQKKMTQLEMEIQEAFLRFMASILKG FT YRTYLRPITEAPSNKATAADSLFDRQGFLKSRDRAYAKFYTLLSKTQIFIRFIEECSFV FT SDKDTGLAFFDDCIEKLFPDKGTEKTDKVDFDSAEDTRLIELDDSQKSEHTVFIMPPEP FT PPDDGKDLSPKYSYKYFPRLDLKLFDRPQELKLCFSRHPTGNSITKSPPLMAKRTKQEI FT KTAHKLAKRCYTNPPQWAKCLFSHCYSLWFICLPAYVRVSHPKVRALQQAYDVLIKMRK FT TDVDPLDEVCYRVVMQLCGLWGHPVLAVRVLFEMKTARIKPNAITYGYYNKVVLESPWP FT SSTRSGIFLWTKVRNVVRGLAQFRQPLKKTVQRSQVSSISGGQSDQGYGSKDELIKDDA FT EIHVPEEQAARELITKTKMQTEEVCDASAIVAKHSQPSPEPHSPTEPPAWGSSIVKVPS FT GIFDVNSRKSSTGSISNVLFSTQDPVEDAVFGEATNLKKNGDRGEKRQKHFPERSCSFS FT SESRAGMLLKKSSLDSNSSEMAIMMGADAKILTAALTCPKTSLLHIARTHSFENVSCHL FT PDSRTCMSESTWNPEHRSSPVPEMLEESQELLEPVVDDVPKTTATVDTYESLLSDSNSN FT QSRDLKTVSKDLRNKRSSLYGIAKVVQREDVETGLDPLSLLATECTGGKTPDSEDKLFS FT PVIARNLADEIESYMNLKSPLGSKSSSMELHREENRESGMTTAFIHALERRSSLPLDHG FT SPAQENPESEKSSPAVSRSKTFTGRFKQQTPSRTHKERSTSLSALVRSSPHGSLGSVVN FT SLSGLKLDNILSGPKIDVLKSGMKQAATVASKMWVAVASAYSYSDDEEETNRDYSFPAG FT LEDHILGENISPNTSISGLVPSELTQSNTSLGSSSSSGDVGKLHYPTGEVPFPRGMKGQ FT DFEKSDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDSNLNT FT ACPFCKSNFLPLLNIEFKDLRGSASFFLKPSTSGDSLQSGSIPLANESLEHKPVSSLAE FT PDLINFMDFPKHNQIITEETGSAVEPSDEIKRASGDVQTMKISSVPNSLSKRNVSLTRS FT HSVGGPLQNIDFTQRPFHGISTVSLPNSLQEVVDPLGKRPNPPPVSVPYLSPLVLRKEL FT ESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNEGVQLPL FT SSLSQDSKLVYIQLLWDNINLHQEPREPLYVSWRNFNSEKKSSLLSEEQQETSTLVETI FT RQSIQHNNVLKPINLLSQQMKPGMKRQRSLYREILFLSLVSLGRENIDIEAFDNEYGIA FT YNSLSSEILERLQKIDAPPSASVEWCRKCFGAPLI" FT mRNA complement(join(19291335..19291441,19292273..19292577)) FT /locus_tag="RP11-146N23.4-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BF223251.1" FT misc_feature 19318506 FT /note="Clone_left_end: RP11-513M16" FT misc_feature 19322506..19433218 FT /note="annotated region of clone" FT mRNA join(19332090..19332182,19334975..19335103, FT 19336268..19336412,19336684..19336830,19340990..19341112, FT 19342631..19342768,19345919..19347084,19350700..19350877, FT 19352071..19352180,19352488..19352663,19356970..19357152, FT 19357963..19358158,19360242..19360487,19361844..19361961, FT 19369835..19369985,19371754..19371818,19372035..19372596, FT 19372880..19374122) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-006" FT /product="DENN/MADD domain containing 4C" FT /note="match: ESTs: Em:AI199297.1 Em:AI686526.1 FT Em:BF163878.1 Em:BF222497.1" FT /note="match: cDNAs: Em:BC040249.1 Em:BC040798.1" FT CDS join(19332150..19332182,19334975..19335103, FT 19336268..19336412,19336684..19336830,19340990..19341112, FT 19342631..19342768,19345919..19347084,19350700..19350877, FT 19352071..19352180,19352488..19352663,19356970..19357152, FT 19357963..19358158,19360242..19360487,19361844..19361961, FT 19369835..19369985,19371754..19371818,19372035..19372171) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-006" FT /standard_name="OTTHUMP00000021119" FT /product="DENN/MADD domain containing 4C" FT /protein_id="CAM21138.1" FT /translation="MRKTDVDPLDEVCYRVVMQLCGLWGHPVLAVRVLFEMKTARIKPN FT AITYGYYNKVVLESPWPSSTRSGIFLWTKVRNVVRGLAQFRQPLKKTVQRSQVSSISAL FT QNVTGGSDGDTVSHGSVDSSNDANNGEHTVFVRDLIRLESIDNHSSTGGQSDQGYGSKD FT ELIKDDAEIHVPEEQAARELITKTKMQTEEVCDASAIVAKHSQPSPEPHSPTEPPAWGS FT SIVKVPSGIFDVNSRKSSISNVLFSTQDPVEDAVFGEATNLKKNGDRGEKRQKHFPERS FT CSFSSESRAGMLLKKSSLDSNSSEMAIMMGADAKILTAALTCPKTSLLHIARTHSFENV FT SCHLPDSRTCMSESTWNPEHRSSPVPEMLEESQELLEPVVDDVPKTTATVDTYESLLSD FT SNSNQSRDLKTVSKDLRNKRSSLYGIAKVVQREDVETGLDPLSLLATECTGGKTPDSED FT KLFSPVIARNLADEIESYMNLKSPLGSKSSSMELHREENRESGMTTAFIHALERRSSLP FT LDHGSPAQENPESEKSSPAVSRSKTFTGRFKQQTPSRTHKERSTSLSALVRSSPHGSLG FT SVVNSLSGLKLDNILSGPKIDVLKSGMKQAATVASKMWVAVASAYSYSDDEEETNRDYS FT FPAGLEDHILGENISPNTSISGLVPSELTQSNTSLGSSSSSGDVGKLHYPTGEVPFPRG FT MKGQDFEKSDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDS FT NLNTACPFCKSNFLPLLNIEFKDLRGSASFFLKPSTSGDSLQSGSIPLANESLEHKPVS FT SLAEPDLINFMDFPKHNQIITEETGSAVEPSDEIKRASGDVQTMKISSVPNSLSKRNVS FT LTRSHSVGGPLQNIDFTQRPFHGISTVSLPNSLQEVVDPLGKRPNPPPVSVPYLSPLVL FT RKELESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNEGV FT QLPLSSLSQDSKLVYIQLLWDNINLHQEPREPLYVSWRNFNSEKKSSLLSEEQQETSTL FT VETIRQSIQHNNVLKPINLLSQQMKPGMKRQRSLYREILFLSLVSLGRENIDIEAFDNE FT YGIAYNSLSSEILERLQKIDAPPSASVEWCRKCFGAPLI" FT mRNA join(19342667..19342777,19345919..19347084, FT 19350700..19350877,19352071..19352180,19352488..19352663, FT 19356970..19357152,19357963..19358158,19360242..19360487, FT 19361844..19361961,19369835..19369985,19372035..19372878) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-002" FT /product="DENN/MADD domain containing 4C" FT /note="match: ESTs: Em:AA133985.1 Em:AA543735.1 FT Em:AA729555.1 Em:AI558196.1 Em:AU118758.1 Em:AU121666.1 FT Em:AU137675.1 Em:BE884499.1 Em:BF398669.1 Em:BF530265.1 FT Em:BF926626.1 Em:BQ013027.1 Em:BQ374841.1 Em:BQ435488.1" FT /note="match: cDNAs: Em:AK025705.1" FT CDS join(19346077..19347084,19350700..19350877, FT 19352071..19352180,19352488..19352663,19356970..19357152, FT 19357963..19358158,19360242..19360487,19361844..19361961, FT 19369835..19369985,19372035..19372044) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-002" FT /standard_name="OTTHUMP00000021108" FT /product="DENN/MADD domain containing 4C" FT /note="match: proteins: Sw:Q5VZ89" FT /protein_id="CAM21139.1" FT /translation="MLLKKSSLDSNSSEMAIMMGADAKILTAALTCPKTSLLHIARTHS FT FENVSCHLPDSRTCMSESTWNPEHRSSPVPEMLEESQELLEPVVDDVPKTTATVDTYES FT LLSDSNSNQSRDLKTVSKDLRNKRSSLYGIAKVVQREDVETGLDPLSLLATECTGGKTP FT DSEDKLFSPVIARNLADEIESYMNLKSPLGSKSSSMELHREENRESGMTTAFIHALERR FT SSLPLDHGSPAQENPESEKSSPAVSRSKTFTGRFKQQTPSRTHKERSTSLSALVRSSPH FT GSLGSVVNSLSGLKLDNILSGPKIDVLKSGMKQAATVASKMWVAVASAYSYSDDEEETN FT RDYSFPAGLEDHILGENISPNTSISGLVPSELTQSNTSLGSSSSSGDVGKLHYPTGEVP FT FPRGMKGQDFEKSDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWT FT ADDSNLNTACPFCKSNFLPLLNIEFKDLRGSASFFLKPSTSGDSLQSGSIPLANESLEH FT KPVSSLAEPDLINFMDFPKHNQIITEETGSAVEPSDEIKRASGDVQTMKISSVPNSLSK FT RNVSLTRSHSVGGPLQNIDFTQRPFHGISTVSLPNSLQEVVDPLGKRPNPPPVSVPYLS FT PLVLRKELESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHC FT NEGVQLPLSSLSQDSKLVYIQLLWDNINLHQEPREPLYVSWRNFNSEKKSSLLSEEQQE FT TSTLVETIRQSIQHNNVLKPINLLSQQMKPGMKRQRGI" FT mRNA join(19346554..19347084,19350700..19350877, FT 19352071..19352180,19352488..19352663,19356970..19357152, FT 19357963..19358158,19360242..19360487,19361844..19361961, FT 19369835..19369985,19371754..19371818,19372035..19373543) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-003" FT /product="DENN/MADD domain containing 4C" FT /note="match: cDNAs: Em:AK001046.1 Em:AK002020.1 FT Em:AL834521.1" FT CDS join(19346632..19347084,19350700..19350877, FT 19352071..19352180,19352488..19352663,19356970..19357152, FT 19357963..19358158,19360242..19360487,19361844..19361961, FT 19369835..19369985,19371754..19371818,19372035..19372171) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-003" FT /standard_name="OTTHUMP00000021109" FT /product="DENN/MADD domain containing 4C" FT /note="match: proteins: Sw:Q5VZ89" FT /protein_id="CAM21140.1" FT /translation="MNLKSPLGSKSSSMELHREENRESGMTTAFIHALERRSSLPLDHG FT SPAQENPESEKSSPAVSRSKTFTGRFKQQTPSRTHKERSTSLSALVRSSPHGSLGSVVN FT SLSGLKLDNILSGPKIDVLKSGMKQAATVASKMWVAVASAYSYSDDEEETNRDYSFPAG FT LEDHILGENISPNTSISGLVPSELTQSNTSLGSSSSSGDVGKLHYPTGEVPFPRGMKGQ FT DFEKSDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDSNLNT FT ACPFCKSNFLPLLNIEFKDLRGSASFFLKPSTSGDSLQSGSIPLANESLEHKPVSSLAE FT PDLINFMDFPKHNQIITEETGSAVEPSDEIKRASGDVQTMKISSVPNSLSKRNVSLTRS FT HSVGGPLQNIDFTQRPFHGISTVSLPNSLQEVVDPLGKRPNPPPVSVPYLSPLVLRKEL FT ESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNEGVQLPL FT SSLSQDSKLVYIQLLWDNINLHQEPREPLYVSWRNFNSEKKSSLLSEEQQETSTLVETI FT RQSIQHNNVLKPINLLSQQMKPGMKRQRSLYREILFLSLVSLGRENIDIEAFDNEYGIA FT YNSLSSEILERLQKIDAPPSASVEWCRKCFGAPLI" FT mRNA join(19346726..19347084,19350700..19350877, FT 19352071..19352180,19352488..19352663,19356970..19357693) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-004" FT /product="DENN/MADD domain containing 4C" FT /note="match: cDNAs: Em:AK000627.1" FT CDS join(19347010..19347084,19350700..19350877, FT 19352071..19352180,19352488..19352663,19356970..19357207) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-004" FT /standard_name="OTTHUMP00000021110" FT /product="DENN/MADD domain containing 4C" FT /note="match: proteins: Tr:Q9NWT3" FT /protein_id="CAM21141.1" FT /translation="MKQAATVASKMWVAVASAYSYSDDEEETNRDYSFPAGLEDHILGE FT NISPNTSISGLVPSELTQSNTSLGSSSSSGDVGKLHYPTGEVPFPRGMKGQDFEKSDHG FT SSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDSNLNTACPFCKSN FT FLPLLNIEFKDLRGSASFFLKPSTSGDSLQSGSIPLANESLEHKPVSSLAEPDLINFMD FT FPKHNQIITEETGSAVEPRYQRVQRPLYVVINGVPL" FT misc_feature 19350431 FT /note="Clone_right_end: RP11-146N23" FT polyA_signal 19373522..19373527 FT polyA_site 19373543 FT polyA_site complement(19375713) FT polyA_signal complement(19375736..19375741) FT mRNA complement(join(19376253..19376386,19376492..19376837)) FT /gene="RPS6" FT /locus_tag="RP11-513M16.6-005" FT /product="ribosomal protein S6" FT /note="match: ESTs: Em:AA483380.1 Em:AA484108.1" FT mRNA complement(join(19376268..19376386,19376492..19376649, FT 19378366..19378512,19378706..19378916,19379485..19380204)) FT /gene="RPS6" FT /locus_tag="RP11-513M16.6-002" FT /product="ribosomal protein S6" FT /note="match: ESTs: Em:AL538733.1 Em:AL567473.1" FT CDS complement(join(19376291..19376386,19376492..19376649, FT 19378366..19378512,19378706..19378916,19379485..19379529)) FT /gene="RPS6" FT /locus_tag="RP11-513M16.6-002" FT /standard_name="OTTHUMP00000021121" FT /product="ribosomal protein S6" FT /protein_id="CAM21142.1" FT /translation="MATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLL FT LSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGP FT KRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIAL FT KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK" FT mRNA complement(join(19376283..19376386,19376492..19376649, FT 19378366..19378512,19378706..19378916,19379485..19379616, FT 19380086..19380196)) FT /gene="RPS6" FT /locus_tag="RP11-513M16.6-003" FT /product="ribosomal protein S6" FT /note="match: ESTs: Em:AV647902.1 Em:AV649261.1 FT Em:AV649301.1 Em:AV649587.1 Em:AV717663.1 Em:BG289310.1 FT Em:BQ055430.1" FT mRNA complement(join(19375713..19376386,19376492..19376649, FT 19378366..19378512,19378706..19378916,19379485..19379616, FT 19380188..19380252)) FT /gene="RPS6" FT /locus_tag="RP11-513M16.6-001" FT /product="ribosomal protein S6" FT /note="match: ESTs: Em:AA706457.1 Em:AI141131.1 FT Em:AI417711.1 Em:AI568319.1 Em:AI623754.1 Em:AI829303.1 FT Em:AI926606.1 Em:AI972953.1 Em:AL546106.1 Em:AL551379.1 FT Em:AV699891.1 Em:AV720210.1 Em:AV744204.1 Em:AW170314.1 FT Em:BB581450.1 Em:BE349689.1 Em:BE393037.1 Em:BG564239.1 FT Em:BG747392.1 Em:BG975763.1 Em:BI262165.1 Em:BI336180.1 FT Em:BI558675.1 Em:BJ020170.1 Em:BM251854.1 Em:BQ198969.1 FT Em:BQ807576.1" FT /note="match: cDNAs: Em:AB062123.1 Em:BC009427.1 FT Em:BC013296.1 Em:BC027620.1 Em:M20020.1" FT CDS complement(join(19376291..19376386,19376492..19376649, FT 19378366..19378512,19378706..19378916,19379485..19379616, FT 19380188..19380193)) FT /gene="RPS6" FT /locus_tag="RP11-513M16.6-001" FT /standard_name="OTTHUMP00000021120" FT /product="ribosomal protein S6" FT /note="match: proteins: Sw:P62753 Sw:P62755 Sw:Q9YGF2 FT Tr:P62754 Tr:P62754 Tr:P62754 Tr:P62754 Tr:Q96DV6 FT Tr:Q9PTD6" FT /protein_id="CAM21143.1" FT /translation="MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEW FT KGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDA FT NLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLN FT KEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKE FT KRQEQIAKRRRLSSLRASTSKSESSQK" FT mRNA complement(join(19378772..19379616,19380188..19380234)) FT /gene="RPS6" FT /locus_tag="RP11-513M16.6-004" FT /product="ribosomal protein S6" FT /note="match: ESTs: Em:AV734545.1 Em:BG771587.1 FT Em:BQ705934.1" FT CDS complement(join(19379347..19379616,19380188..19380193)) FT /gene="RPS6" FT /locus_tag="RP11-513M16.6-004" FT /standard_name="OTTHUMP00000021123" FT /product="ribosomal protein S6" FT /protein_id="CAM21144.1" FT /translation="MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEW FT KVKVDKLLQVFKSETVNAIGNWYLEWGSDSGFWLLTFGKLLPNATL" FT CDS complement(join(19383220..19383347,19383674..19383878)) FT /pseudo FT /locus_tag="RP11-513M16.5-001" FT /product="NADH dehydrogenase (ubiquinone) 1 alpha FT subcomplex, 5, 13kDa (NDUFA5) pseudogene" FT /note="match: proteins: Sw:P23935 Sw:Q16718 Sw:Q16718 FT Sw:Q63362 Sw:Q9CPP6 Sw:Q9CPP6 Sw:Q9CPP6 Sw:Q9CPP6 Sw:Q9CPP6 FT Tr:Q9CX78" FT mRNA join(19409057..19409190,19423860..19423974, FT 19424698..19424839,AL158206.8:1827..1964, FT AL158206.8:13161..13298,AL158206.8:17330..18900) FT /gene="ASAH3L" FT /locus_tag="RP11-363E7.1-001" FT /product="N-acylsphingosine amidohydrolase 3-like" FT /note="match: ESTs: Em:AA309752.1 Em:AA900336.1 FT Em:BB660847.1 Em:BE668106.1 Em:BF549345.1 Em:BF554219.1 FT Em:BF839613.1 Em:BI848265.1 Em:H90930.1" FT /note="match: cDNAs: Em:AF282864.1" FT CDS join(19409083..19409190,19423860..19423974, FT 19424698..19424839,AL158206.8:1827..1964, FT AL158206.8:13161..13298,AL158206.8:17330..17516) FT /gene="ASAH3L" FT /locus_tag="RP11-363E7.1-001" FT /standard_name="OTTHUMP00000021124" FT /product="N-acylsphingosine amidohydrolase 3-like" FT /note="match: proteins: Sw:Q8VD53 Sw:Q9VIP7" FT /protein_id="CAM21146.1" FT /translation="MGAPHWWDQLQAGSSEVDWCEDNYTIVPAIAEFYNTISNVLFFIL FT PPICMCLFRQYATCFNSGIYLIWTLLVVVGIGSVYFHATLSFLGQMLDELAVLWVLMCA FT LAMWFPRRYLPKIFRNDRGRFKVVVSVLSAVTTCLAFVKPAINNISLMTLGVPCTALLI FT AELKRCDNMRVFKLGLFSGLWWTLALFCWISDRAFCELLSSFNFPYLHCMWHILICLAA FT YLGCVCFAYFDAASEIPEQGPVIKFWPNEKWAFIGVPYVSLLCANKKSSVKIT" FT CDS join(AL161909.20:90957..91260,AL161909.20:101550..101790, FT AL161909.20:103356..103446,AL161909.20:105483..105657, FT AL161909.20:110788..111025,AL161909.20:112873..112900, FT AL161909.20:114010..114064,AL161909.20:114967..115108, FT AL161909.20:120133..120295,AL161909.20:131209..131290, FT AL161909.20:131494..131608,19324360..19324504, FT 19326061..19326154,19328026..19328158,19331974..19332178, FT 19334974..19335100,19336270..19336492) FT /pseudo FT /locus_tag="RP11-513M16.2-001" FT /product="novel pseudogene" FT /note="match: proteins: Sw:Q7Z401 Tr:O75064 Tr:O96957 FT Tr:Q9TXV4 Tr:Q9TXV4 Tr:Q9W3D2 Tr:Q9W3D3" FT misc_feature 19421916..19421936 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT mRNA join(AL161909.20:103406..103447,AL161909.20:105486..105658, FT AL161909.20:110790..111028,AL161909.20:112838..112882, FT 19350740..19350877,19352071..19352180,19352488..19352663, FT 19356970..19357152,19357963..19358158,19360242..19360487, FT 19361844..19361961,19369835..19369985,19371754..19371818, FT 19372035..19374275) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-001" FT /product="DENN/MADD domain containing 4C" FT /note="match: ESTs: Em:AA454038.1 Em:AU118512.1 FT Em:BE890932.1 Em:BF150767.1 Em:BF450548.1 Em:BF989437.1 FT Em:BG403131.1 Em:BI858648.1 Em:BM474868.1 Em:BM751014.1 FT Em:BM795612.1 Em:BQ553632.1 Em:BQ921044.1" FT /note="match: cDNAs: Em:AK000693.1" FT mRNA join(AL161909.20:105533..105658,AL161909.20:110790..111028, FT AL161909.20:112838..112904,AL161909.20:114011..114069, FT AL161909.20:114969..115113,AL161909.20:120134..120309, FT AL161909.20:131199..131299,AL161909.20:131403..131621, FT 19324360..19324505,19325937..19325972,19326062..19326192, FT 19328028..19328160,19331976..19332182,19334975..19335103, FT 19336268..19336412,19340990..19341112,19342631..19342777, FT 19345919..19347084,19350700..19350877,19352071..19352180, FT 19352488..19352663,19356970..19357152,19357963..19358158, FT 19360242..19360487,19361844..19361961,19369835..19369985, FT 19371754..19371818,19372035..19372856) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-005" FT /product="DENN/MADD domain containing 4C" FT /note="match: ESTs: Em:AA525272.1 Em:BF989436.1 FT Em:BG460666.1 Em:BI055102.1 Em:CB520326.1 Em:CB773449.1 FT Em:CN427691.1" FT /note="match: cDNAs: Em:AK125842.1 Em:AK127734.1" FT CDS join(AL161909.20:105566..105658,AL161909.20:110790..111028, FT AL161909.20:112838..112904,AL161909.20:114011..114069, FT AL161909.20:114969..115113,AL161909.20:120134..120309, FT AL161909.20:131199..131299,AL161909.20:131403..131621, FT 19324360..19324505,19325937..19325972,19326062..19326192, FT 19328028..19328160,19331976..19332182,19334975..19335103, FT 19336268..19336412,19340990..19341112,19342631..19342777, FT 19345919..19347084,19350700..19350877,19352071..19352180, FT 19352488..19352663,19356970..19357152,19357963..19358158, FT 19360242..19360487,19361844..19361961,19369835..19369985, FT 19371754..19371818,19372035..19372171) FT /gene="DENND4C" FT /locus_tag="RP11-513M16.1-005" FT /standard_name="OTTHUMP00000038918" FT /product="DENN/MADD domain containing 4C" FT /note="match: proteins: Sw:Q5VZ89" FT /protein_id="CAM21148.1" FT /translation="MGATIECWDPETKYPLPVFSTFVLTGSSAKKVYGAAIQFYEPYSR FT ELLSEKQLMHLGLLTPVERKMVSKSINTNKCICLLSHWPFFEAFRKFLMFIYKLSVSGP FT HPLPIEKHISHFMQNIPFPSPQRPRILVQLSVHDALILSQPVSTPLPLSGANFSTLLMN FT LGPENCATLLLFVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAA FT VLSAPLPFIVGVDSRYFDLHDPPQDVVCIDLDTNMLYVSDEKKNMNWKQLPKKPCKNLL FT STLKKLYPQLSSVHQKTQEGSAIDMTPIEADFSWQKKMTQLEMEIQEAFLRFMASILKG FT YRTYLRPITEAPSNKATAADSLFDRQGFLKSRDRAYAKFYTLLSKTQIFIRFIEECSFV FT SDKDTGLAFFDDCIEKLFPDKGTEKTDKVDFDSAEDTRLIELDDSQKSEHTVFIMPPEP FT PPDDGKDLSPKYSYKYFPRLDLKLFDRPQELKLCFSRHPTGNSITKSPPLMAKRTKQEI FT KTAHKLAKRCYTNPPQWAKCLFSHCYSLWFICLPAYVRVSHPKVRALQQAYDVLIKMRK FT TDVDPLDEVCYRVVMQLCGLWGHPVLAVRVLFEMKTARIKPNAITYGYYNKVVLESPWP FT SSTRSGIFLWTKVRNVVRGLAQFRQPLKKTVQRSQVSSISGGQSDQGYGSKDELIKDDA FT EIHVPEEQAARELITKTKMQTEEVCDASAIVAKHSQPSPEPHSPTEPPAWGSSIVKVPS FT GIFDVNSRKSSTGSISNVLFSTQDPVEDAVFGEATNLKKNGDRGEKRQKHFPERSCSFS FT SESRAGMLLKKSSLDSNSSEMAIMMGADAKILTAALTCPKTSLLHIARTHSFENVSCHL FT PDSRTCMSESTWNPEHRSSPVPEMLEESQELLEPVVDDVPKTTATVDTYESLLSDSNSN FT QSRDLKTVSKDLRNKRSSLYGIAKVVQREDVETGLDPLSLLATECTGGKTPDSEDKLFS FT PVIARNLADEIESYMNLKSPLGSKSSSMELHREENRESGMTTAFIHALERRSSLPLDHG FT SPAQENPESEKSSPAVSRSKTFTGRFKQQTPSRTHKERSTSLSALVRSSPHGSLGSVVN FT SLSGLKLDNILSGPKIDVLKSGMKQAATVASKMWVAVASAYSYSDDEEETNRDYSFPAG FT LEDHILGENISPNTSISGLVPSELTQSNTSLGSSSSSGDVGKLHYPTGEVPFPRGMKGQ FT DFEKSDHGSSQNTSMSSIYQNCAMEVLMSSCSQCRACGALVYDEEIMAGWTADDSNLNT FT ACPFCKSNFLPLLNIEFKDLRGSASFFLKPSTSGDSLQSGSIPLANESLEHKPVSSLAE FT PDLINFMDFPKHNQIITEETGSAVEPSDEIKRASGDVQTMKISSVPNSLSKRNVSLTRS FT HSVGGPLQNIDFTQRPFHGISTVSLPNSLQEVVDPLGKRPNPPPVSVPYLSPLVLRKEL FT ESLLENEGDQVIHTSSFINQHPIIFWNLVWYFRRLDLPSNLPGLILTSEHCNEGVQLPL FT SSLSQDSKLVYIQLLWDNINLHQEPREPLYVSWRNFNSEKKSSLLSEEQQETSTLVETI FT RQSIQHNNVLKPINLLSQQMKPGMKRQRSLYREILFLSLVSLGRENIDIEAFDNEYGIA FT YNSLSSEILERLQKIDAPPSASVEWCRKCFGAPLI" FT misc_feature 19431119 FT /note="Clone_left_end: RP11-363E7" FT misc_feature 19433219..19596660 FT /note="annotated region of clone" FT polyA_signal complement(19459236..19459241) FT mRNA complement(19460882..19461323) FT /locus_tag="RP11-363E7.3-001" FT /product="microtubule-associated protein pseudogene" FT mRNA complement(join(19461158..19461355,19463738..19463826, FT 19463996..19464053,19464352..19464522)) FT /locus_tag="RP11-363E7.3-002" FT /product="microtubule-associated protein pseudogene" FT /note="match: ESTs: Em:DN930544.1 Em:DN930545.1" FT mRNA complement(join(19515978..19516400,19520892..19521058, FT 19528047..19528136,19550135..19550266,19573349..19573467, FT 19576922..19577020,AL133281.12:667..717, FT AL133281.12:23022..23130,AL133281.12:25699..25737, FT AL158077.15:32678..33669)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-001" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /note="match: cDNAs: Em:AF021923.1 Em:AF097366.1 FT Em:AF177985.1 Em:AF177986.1 Em:AK012771.1" FT /note="match: ESTs: Em:AW837894.1 Em:AW837895.1 FT Em:AW837896.1 Em:BE862695.1" FT CDS complement(join(19516151..19516400,19520892..19521058, FT 19528047..19528136,19550135..19550266,19573349..19573467, FT 19576922..19577020,AL133281.12:667..717, FT AL133281.12:23022..23130,AL133281.12:25699..25737, FT AL158077.15:32678..33607)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-001" FT /standard_name="OTTHUMP00000021125" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /note="match: proteins: Sw:O54701 Sw:Q9IAL7 Sw:Q9UI40" FT /protein_id="CAH73020.1" FT /translation="MDLQQSTTITSLEKWCLDESLSGCRRHYSVKKKLKLIRVLGLFMG FT LVAISTVSFSISAFSETDTQSTGEASVVSGPRVAQGYHQRTLLDLNDKILDYTPQPPLS FT KEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVIGMIYMFIALAIVCDEFFVPSLTV FT ITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVGSAVFNILFVIGM FT CALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFMK FT FNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNS FT LMRNSIFQLMIHTLDPLAEELGSYGKLKYYDTMTEEGRFREKASILHKIAKKKCHVDEN FT ERQNGAANHVEKIELPNSTSTDVEMTPSSDASEPVQNGNLSHNIEGAEAQTADEEEDQP FT LSLAWPSETRKQVTFLIVFPIVFPLWITLPDVRKPSSRKFFPITFFGSITWIAVFSYLM FT VWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDI FT TVGLPLPWLLYTVIHRFQPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFI FT MFGLYFVFLVVSVLLEDRILTCPVSI" FT mRNA complement(join(19515978..19516400,19520892..19521058, FT 19528047..19528136,19550135..19550266,19573349..19573467, FT 19576922..19577020,AL133281.12:23022..23130, FT AL133281.12:25699..25737,AL158077.15:32678..33669)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-002" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /note="match: cDNAs: Em:AF177987.1" FT CDS complement(join(19516151..19516400,19520892..19521058, FT 19528047..19528136,19550135..19550266,19573349..19573467, FT 19576922..19577020,AL133281.12:23022..23130, FT AL133281.12:25699..25737,AL158077.15:32678..33607)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-002" FT /standard_name="OTTHUMP00000021126" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /protein_id="CAH73021.1" FT /translation="MDLQQSTTITSLEKWCLDESLSGCRRHYSVKKKLKLIRVLGLFMG FT LVAISTVSFSISAFSETDTQSTGEASVVSGPRVAQGYHQRTLLDLNDKILDYTPQPPLS FT KEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVIGMIYMFIALAIVCDEFFVPSLTV FT ITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVGSAVFNILFVIGM FT CALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFMK FT FNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNS FT LMRNSIFQLMIHTLDPLAEGRFREKASILHKIAKKKCHVDENERQNGAANHVEKIELPN FT STSTDVEMTPSSDASEPVQNGNLSHNIEGAEAQTADEEEDQPLSLAWPSETRKQVTFLI FT VFPIVFPLWITLPDVRKPSSRKFFPITFFGSITWIAVFSYLMVWWAHQVGETIGISEEI FT MGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPLPWLLYTVIHRF FT QPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFIMFGLYFVFLVVSVLLED FT RILTCPVSI" FT mRNA join(AL391834.8:88552..88685,AL391834.8:103355..103469, FT AL391834.8:104193..104334,19434945..19435082, FT 19446279..19446416,19450448..19452018) FT /gene="ASAH3L" FT /locus_tag="RP11-363E7.1-001" FT /product="N-acylsphingosine amidohydrolase 3-like" FT /note="match: cDNAs: Em:AF282864.1" FT /note="match: ESTs: Em:AA309752.1 Em:AA900336.1 FT Em:BB660847.1 Em:BE668106.1 Em:BF549345.1 Em:BF554219.1 FT Em:BF839613.1 Em:BI848265.1 Em:H90930.1" FT CDS join(AL391834.8:88578..88685,AL391834.8:103355..103469, FT AL391834.8:104193..104334,19434945..19435082, FT 19446279..19446416,19450448..19450634) FT /gene="ASAH3L" FT /locus_tag="RP11-363E7.1-001" FT /standard_name="OTTHUMP00000021124" FT /product="N-acylsphingosine amidohydrolase 3-like" FT /note="match: proteins: Sw:Q8VD53 Sw:Q9VIP7" FT /protein_id="CAH73022.1" FT /translation="MGAPHWWDQLQAGSSEVDWCEDNYTIVPAIAEFYNTISNVLFFIL FT PPICMCLFRQYATCFNSGIYLIWTLLVVVGIGSVYFHATLSFLGQMLDELAVLWVLMCA FT LAMWFPRRYLPKIFRNDRGRFKVVVSVLSAVTTCLAFVKPAINNISLMTLGVPCTALLI FT AELKRCDNMRVFKLGLFSGLWWTLALFCWISDRAFCELLSSFNFPYLHCMWHILICLAA FT YLGCVCFAYFDAASEIPEQGPVIKFWPNEKWAFIGVPYVSLLCANKKSSVKIT" FT misc_feature 19596461 FT /note="Clone_left_end: RP11-252O2" FT misc_feature 19596661..19755257 FT /note="annotated region of clone" FT misc_feature 19622989 FT /note="Clone_right_end: RP11-363E7" FT mRNA complement(join(AL158206.8:82860..83282, FT AL158206.8:87774..87940,AL158206.8:94929..95018, FT AL158206.8:117017..117148,AL158206.8:140231..140349, FT AL158206.8:143804..143902,19597227..19597277, FT 19619582..19619690,19622259..19622297, FT AL158077.15:32678..33669)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-001" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /note="match: cDNAs: Em:AF021923.1 Em:AF097366.1 FT Em:AF177985.1 Em:AF177986.1 Em:AK012771.1" FT /note="match: ESTs: Em:AW837894.1 Em:AW837895.1 FT Em:AW837896.1 Em:BE862695.1" FT CDS complement(join(AL158206.8:83033..83282, FT AL158206.8:87774..87940,AL158206.8:94929..95018, FT AL158206.8:117017..117148,AL158206.8:140231..140349, FT AL158206.8:143804..143902,19597227..19597277, FT 19619582..19619690,19622259..19622297, FT AL158077.15:32678..33607)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-001" FT /standard_name="OTTHUMP00000021125" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /note="match: proteins: Sw:O54701 Sw:Q9IAL7 Sw:Q9UI40" FT /protein_id="CAH71736.1" FT /translation="MDLQQSTTITSLEKWCLDESLSGCRRHYSVKKKLKLIRVLGLFMG FT LVAISTVSFSISAFSETDTQSTGEASVVSGPRVAQGYHQRTLLDLNDKILDYTPQPPLS FT KEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVIGMIYMFIALAIVCDEFFVPSLTV FT ITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVGSAVFNILFVIGM FT CALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFMK FT FNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNS FT LMRNSIFQLMIHTLDPLAEELGSYGKLKYYDTMTEEGRFREKASILHKIAKKKCHVDEN FT ERQNGAANHVEKIELPNSTSTDVEMTPSSDASEPVQNGNLSHNIEGAEAQTADEEEDQP FT LSLAWPSETRKQVTFLIVFPIVFPLWITLPDVRKPSSRKFFPITFFGSITWIAVFSYLM FT VWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDI FT TVGLPLPWLLYTVIHRFQPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFI FT MFGLYFVFLVVSVLLEDRILTCPVSI" FT mRNA complement(join(AL158206.8:82860..83282, FT AL158206.8:87774..87940,AL158206.8:94929..95018, FT AL158206.8:117017..117148,AL158206.8:140231..140349, FT AL158206.8:143804..143902,19619582..19619690, FT 19622259..19622297,AL158077.15:32678..33669)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-002" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /note="match: cDNAs: Em:AF177987.1" FT CDS complement(join(AL158206.8:83033..83282, FT AL158206.8:87774..87940,AL158206.8:94929..95018, FT AL158206.8:117017..117148,AL158206.8:140231..140349, FT AL158206.8:143804..143902,19619582..19619690, FT 19622259..19622297,AL158077.15:32678..33607)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-002" FT /standard_name="OTTHUMP00000021126" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /protein_id="CAH71737.1" FT /translation="MDLQQSTTITSLEKWCLDESLSGCRRHYSVKKKLKLIRVLGLFMG FT LVAISTVSFSISAFSETDTQSTGEASVVSGPRVAQGYHQRTLLDLNDKILDYTPQPPLS FT KEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVIGMIYMFIALAIVCDEFFVPSLTV FT ITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVGSAVFNILFVIGM FT CALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFMK FT FNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNS FT LMRNSIFQLMIHTLDPLAEGRFREKASILHKIAKKKCHVDENERQNGAANHVEKIELPN FT STSTDVEMTPSSDASEPVQNGNLSHNIEGAEAQTADEEEDQPLSLAWPSETRKQVTFLI FT VFPIVFPLWITLPDVRKPSSRKFFPITFFGSITWIAVFSYLMVWWAHQVGETIGISEEI FT MGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPLPWLLYTVIHRF FT QPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFIMFGLYFVFLVVSVLLED FT RILTCPVSI" FT CDS 19705336..19705653 FT /pseudo FT /locus_tag="RP11-252O2.2-001" FT /product="novel pseudogene." FT /note="match: proteins: Tr:Q9BQE6 Tr:Q9CSS6 Tr:Q9D937" FT misc_feature 19711003 FT /note="Clone_left_end: RP11-471J7" FT misc_feature 19755157 FT /note="Clone_right_end: RP11-252O2" FT misc_feature 19755258..19913157 FT /note="annotated region of clone" FT mRNA complement(join(AL158206.8:82860..83282, FT AL158206.8:87774..87940,AL158206.8:94929..95018, FT AL158206.8:117017..117148,AL158206.8:140231..140349, FT AL158206.8:143804..143902,AL133281.12:667..717, FT AL133281.12:23022..23130,AL133281.12:25699..25737, FT 19785935..19786926)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-001" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /note="match: cDNAs: Em:AF021923.1 Em:AF097366.1 FT Em:AF177985.1 Em:AF177986.1 Em:AK012771.1" FT /note="match: ESTs: Em:AW837894.1 Em:AW837895.1 FT Em:AW837896.1 Em:BE862695.1" FT CDS complement(join(AL158206.8:83033..83282, FT AL158206.8:87774..87940,AL158206.8:94929..95018, FT AL158206.8:117017..117148,AL158206.8:140231..140349, FT AL158206.8:143804..143902,AL133281.12:667..717, FT AL133281.12:23022..23130,AL133281.12:25699..25737, FT 19785935..19786864)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-001" FT /standard_name="OTTHUMP00000021125" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /note="match: proteins: Sw:O54701 Sw:Q9IAL7 Sw:Q9UI40" FT /protein_id="CAH74108.1" FT /translation="MDLQQSTTITSLEKWCLDESLSGCRRHYSVKKKLKLIRVLGLFMG FT LVAISTVSFSISAFSETDTQSTGEASVVSGPRVAQGYHQRTLLDLNDKILDYTPQPPLS FT KEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVIGMIYMFIALAIVCDEFFVPSLTV FT ITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVGSAVFNILFVIGM FT CALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFMK FT FNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNS FT LMRNSIFQLMIHTLDPLAEELGSYGKLKYYDTMTEEGRFREKASILHKIAKKKCHVDEN FT ERQNGAANHVEKIELPNSTSTDVEMTPSSDASEPVQNGNLSHNIEGAEAQTADEEEDQP FT LSLAWPSETRKQVTFLIVFPIVFPLWITLPDVRKPSSRKFFPITFFGSITWIAVFSYLM FT VWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDI FT TVGLPLPWLLYTVIHRFQPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFI FT MFGLYFVFLVVSVLLEDRILTCPVSI" FT mRNA complement(join(AL158206.8:82860..83282, FT AL158206.8:87774..87940,AL158206.8:94929..95018, FT AL158206.8:117017..117148,AL158206.8:140231..140349, FT AL158206.8:143804..143902,AL133281.12:23022..23130, FT AL133281.12:25699..25737,19785935..19786926)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-002" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /note="match: cDNAs: Em:AF177987.1" FT CDS complement(join(AL158206.8:83033..83282, FT AL158206.8:87774..87940,AL158206.8:94929..95018, FT AL158206.8:117017..117148,AL158206.8:140231..140349, FT AL158206.8:143804..143902,AL133281.12:23022..23130, FT AL133281.12:25699..25737,19785935..19786864)) FT /gene="SLC24A2" FT /locus_tag="RP11-363E7.2-002" FT /standard_name="OTTHUMP00000021126" FT /product="solute carrier family 24 FT (sodium/potassium/calcium exchanger), member 2" FT /protein_id="CAH74109.1" FT /translation="MDLQQSTTITSLEKWCLDESLSGCRRHYSVKKKLKLIRVLGLFMG FT LVAISTVSFSISAFSETDTQSTGEASVVSGPRVAQGYHQRTLLDLNDKILDYTPQPPLS FT KEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVIGMIYMFIALAIVCDEFFVPSLTV FT ITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVGSAVFNILFVIGM FT CALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFMK FT FNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNS FT LMRNSIFQLMIHTLDPLAEGRFREKASILHKIAKKKCHVDENERQNGAANHVEKIELPN FT STSTDVEMTPSSDASEPVQNGNLSHNIEGAEAQTADEEEDQPLSLAWPSETRKQVTFLI FT VFPIVFPLWITLPDVRKPSSRKFFPITFFGSITWIAVFSYLMVWWAHQVGETIGISEEI FT MGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPLPWLLYTVIHRF FT QPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFIMFGLYFVFLVVSVLLED FT RILTCPVSI" FT misc_feature 19871113..19871282 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 19877748 FT /note="Clone_left_end: RP11-378I6" FT misc_feature 19911157 FT /note="Clone_right_end: RP11-471J7" FT misc_feature 19879748..20026958 FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT repeat_region complement(19915339..19915448) FT /rpt_family="L1" FT /note="83% identity: matches 1093..1201 of consensus" FT repeat_region 19915927..19915939 FT /note="TTAT repeat" FT exon 19916036..19916048 FT /note="XPOUND prediction, score = 0.336" FT exon 19916281..19916332 FT /note="XPOUND prediction, score = 0.267" FT repeat_region 19916971..19916992 FT /rpt_type=INVERTED FT /note="IR4, 90% complementary to IR4' (38645..38666)" FT repeat_region 19916978..19917133 FT /rpt_family="ttttttttttaat repeat" FT /rpt_type=TANDEM FT /note="homology = 61.5%, counts = 12" FT repeat_region 19917183..19917198 FT /note="GTTTT repeat" FT repeat_region 19917220..19917375 FT /rpt_family="tttatt repeat" FT /rpt_type=TANDEM FT /note="homology = 59.0%, counts = 26" FT exon 19917891..19917924 FT /note="XPOUND prediction, score = 0.393" FT exon 19917929..19917935 FT /note="XPOUND prediction, score = 0.208" FT repeat_region 19918137..19918168 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 96.9%, counts = 16" FT repeat_region 19918139..19918169 FT /note="TG repeat" FT repeat_region 19918392..19918413 FT /rpt_type=INVERTED FT /note="IR4', 90% complementary to IR4 (37224..37245)" FT exon 19918851..19918865 FT /note="XPOUND prediction, score = 0.347" FT exon 19919112..19919128 FT /note="XPOUND prediction, score = 0.222" FT exon complement(19919362..19919384) FT /note="XPOUND prediction, score = 0.294" FT repeat_region complement(19919608..19919661) FT /rpt_family="THE" FT /note="98% identity: matches 314..367 of consensus" FT repeat_region complement(19919635..19919946) FT /rpt_family="THE" FT /note="82% identity: matches 8..326 of consensus" FT repeat_region 19919988..19920006 FT /note="AATGG repeat" FT exon complement(19921116..19921126) FT /note="XPOUND prediction, score = 0.246" FT exon complement(19921151..19921164) FT /note="XPOUND prediction, score = 0.251" FT exon 19921231..19921338 FT /note="MZEF prediction, score = 0.770" FT repeat_region 19921240..19921514 FT /rpt_family="ALU" FT /note="89% identity: matches 1..278 of consensus" FT repeat_region complement(19921250..19921514) FT /rpt_family="L1" FT /note="85% identity: matches 248..516 of consensus" FT repeat_region 19922887..19923054 FT /rpt_family="taattattttaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 60.1%, counts = 12" FT exon complement(19923414..19923427) FT /note="XPOUND prediction, score = 0.241" FT exon complement(19923673..19923688) FT /note="XPOUND prediction, score = 0.237" FT repeat_region 19923785..19923944 FT /rpt_family="L1" FT /note="85% identity: matches 266..427 of consensus" FT repeat_region complement(19923787..19923946) FT /rpt_family="ALU" FT /note="89% identity: matches 245..404 of consensus" FT repeat_region complement(19923899..19924014) FT /rpt_family="ALU" FT /note="82% identity: matches 294..418 of consensus" FT exon complement(19924099..19924101) FT /note="XPOUND prediction, score = 0.201" FT exon 19924463..19924583 FT /note="GENSCAN prediction, score = 2.13" FT repeat_region 19926908..19926919 FT /note="GAG repeat" FT exon complement(19927040..19927140) FT /note="XPOUND prediction, score = 0.299" FT exon complement(19927168..19927213) FT /note="XPOUND prediction, score = 0.334" FT repeat_region 19927468..19927482 FT /note="TGA repeat" FT exon 19927702..19927771 FT /note="GENSCAN prediction, score = 2.67" FT repeat_region 19927861..19927881 FT /note="ACCAA repeat" FT exon complement(19929019..19929056) FT /note="XPOUND prediction, score = 0.323" FT exon complement(19929243..19929295) FT /note="XPOUND prediction, score = 0.302" FT repeat_region 19929538..19929644 FT /rpt_family="MER29" FT /note="85% identity: matches 25..131 of consensus" FT repeat_region 19929686..19929764 FT /rpt_family="MER29" FT /note="90% identity: matches 124..203 of consensus" FT repeat_region complement(19930124..19930237) FT /rpt_family="MER17" FT /note="89% identity: matches 45..156 of consensus" FT repeat_region complement(19930369..19930423) FT /rpt_family="MER7" FT /note="89% identity: matches 121..175 of consensus" FT exon complement(19930983..19931001) FT /note="XPOUND prediction, score = 0.414" FT exon complement(19931702..19931706) FT /note="XPOUND prediction, score = 0.204" FT repeat_region 19931901..19931939 FT /rpt_family="tta repeat" FT /rpt_type=TANDEM FT /note="homology = 79.5%, counts = 13" FT repeat_region 19931919..19931935 FT /note="TTA repeat" FT exon complement(19932367..19932419) FT /note="MZEF prediction, score = 0.591" FT repeat_region 19933445..19933500 FT /rpt_family="catt repeat" FT /rpt_type=TANDEM FT /note="homology = 78.6%, counts = 14" FT repeat_region 19933465..19933508 FT /note="CATT repeat" FT exon 19934304..19934402 FT /note="GENSCAN prediction, score = 3.29" FT misc_feature 19934352..19934827 FT /note="CpG_island (%GC=64.7, o/e=0.75, #CpGs=40)" FT exon complement(19934401..19934583) FT /note="XPOUND prediction, score = 0.341" FT exon 19934668..19934860 FT /note="GENSCAN prediction, score = 2.94" FT repeat_region 19935022..19935057 FT /rpt_type=INVERTED FT /note="IR5, 77% complementary to IR5' (55633..55668)" FT repeat_region 19935026..19935064 FT /note="TTTTA repeat" FT repeat_region 19935040..19935069 FT /rpt_family="tttat repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 6" FT repeat_region 19935380..19935415 FT /rpt_type=INVERTED FT /note="IR5', 77% complementary to IR5 (55275..55310)" FT exon complement(19935601..19935714) FT /note="XPOUND prediction, score = 0.702" FT exon 19935605..19935738 FT /note="GENSCAN prediction, score = 2.27" FT repeat_region 19936277..19936289 FT /note="TAT repeat" FT repeat_region complement(19936342..19936552) FT /rpt_family="ALU" FT /note="81% identity: matches 20..230 of consensus" FT repeat_region 19936434..19936552 FT /rpt_family="L1" FT /note="83% identity: matches 305..419 of consensus" FT exon complement(19936761..19936774) FT /note="XPOUND prediction, score = 0.229" FT exon complement(19936950..19936969) FT /note="XPOUND prediction, score = 0.244" FT exon complement(19937098..19937244) FT /note="MZEF prediction, score = 0.614" FT repeat_region 19938889..19938903 FT /note="ACAAA repeat" FT repeat_region 19938891..19938950 FT /rpt_family="aaaacaaaacaa repeat" FT /rpt_type=TANDEM FT /note="homology = 80.0%, counts = 5" FT repeat_region 19938904..19938922 FT /note="CAAA repeat" FT repeat_region 19939232..19939423 FT /rpt_family="MER7" FT /note="83% identity: matches 36..228 of consensus" FT exon 19939453..19939547 FT /note="MZEF prediction, score = 0.822" FT repeat_region 19939518..19939642 FT /rpt_family="MER17" FT /note="89% identity: matches 49..171 of consensus" FT repeat_region 19939555..19939574 FT /note="AGTG repeat" FT exon 19940518..19940709 FT /note="GENSCAN prediction, score = 6.61" FT repeat_region 19940920..19940933 FT /note="TTTCC repeat" FT exon 19940936..19941055 FT /note="GENSCAN prediction, score = 3.87" FT repeat_region 19941550..19941589 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 95.0%, counts = 20" FT repeat_region 19941555..19941589 FT /note="GT repeat" FT repeat_region 19941590..19941617 FT /note="AG repeat" FT repeat_region 19943821..19943833 FT /note="TTCA repeat" FT repeat_region 19943992..19944081 FT /rpt_family="L1" FT /note="91% identity: matches 538..627 of consensus" FT exon complement(19944143..19944167) FT /note="XPOUND prediction, score = 0.313" FT repeat_region 19944360..19944431 FT /rpt_family="L1" FT /note="88% identity: matches 623..694 of consensus" FT repeat_region 19945314..19945327 FT /note="GGAG repeat" FT exon complement(19946357..19946568) FT /note="GENSCAN prediction, score = 2.37" FT repeat_region 19946767..19946777 FT /note="AC repeat" FT exon complement(19947180..19947340) FT /note="GENSCAN prediction, score = 3.51" FT repeat_region 19947346..19947445 FT /note="GGAA repeat" FT repeat_region 19947365..19947459 FT /rpt_family="aaggagaaagaaaggaagg repeat" FT /rpt_type=TANDEM FT /note="homology = 78.9%, counts = 5" FT repeat_region 19947446..19947458 FT /note="GAAA repeat" FT repeat_region 19947469..19947481 FT /note="AGGA repeat" FT repeat_region 19947507..19947798 FT /rpt_type=INVERTED FT /note="IR6, 81% complementary to IR6' (69253..69544)" FT repeat_region 19947517..19947624 FT /rpt_family="ALU" FT /note="92% identity: matches 149..256 of consensus" FT repeat_region complement(19947517..19947624) FT /rpt_family="L1" FT /note="89% identity: matches 409..516 of consensus" FT repeat_region 19947638..19947788 FT /rpt_family="ALU" FT /note="92% identity: matches 433..583 of consensus" FT repeat_region complement(19947638..19947788) FT /rpt_family="L1" FT /note="86% identity: matches 245..395 of consensus" FT exon complement(19947639..19947651) FT /note="XPOUND prediction, score = 0.324" FT repeat_region 19947789..19947848 FT /rpt_family="agaa repeat" FT /rpt_type=TANDEM FT /note="homology = 91.7%, counts = 15" FT repeat_region 19947807..19947849 FT /note="AAAG repeat" FT misc_feature 19948572..19948838 FT /note="CpG_island (%GC=63.7, o/e=0.93, #CpGs=26)" FT repeat_region 19948573..19948869 FT /rpt_type=INVERTED FT /note="IR7, 84% complementary to IR7' (69236..69545)" FT repeat_region complement(19948574..19948658) FT /rpt_family="L1" FT /note="95% identity: matches 442..526 of consensus" FT repeat_region 19948574..19948819 FT /rpt_family="ALU" FT /note="93% identity: matches 1..246 of consensus" FT repeat_region complement(19948661..19948842) FT /rpt_family="L1" FT /note="89% identity: matches 245..427 of consensus" FT repeat_region 19948978..19948994 FT /note="ATTT repeat" FT repeat_region 19948983..19949292 FT /rpt_type=INVERTED FT /note="IR7', 84% complementary to IR7 (68826..69122)" FT repeat_region 19949000..19949291 FT /rpt_type=INVERTED FT /note="IR6', 81% complementary to IR6 (67760..68051)" FT repeat_region 19949010..19949286 FT /rpt_family="L1" FT /note="83% identity: matches 312..591 of consensus" FT repeat_region complement(19949010..19949291) FT /rpt_family="ALU" FT /note="86% identity: matches 298..579 of consensus" FT exon 19950046..19950058 FT /note="XPOUND prediction, score = 0.273" FT exon 19951052..19951061 FT /note="XPOUND prediction, score = 0.229" FT repeat_region 19951225..19951260 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 18" FT repeat_region 19951225..19951261 FT /note="TG repeat" FT exon 19956076..19956084 FT /note="XPOUND prediction, score = 0.214" FT exon 19956089..19956145 FT /note="XPOUND prediction, score = 0.358" FT repeat_region complement(19956455..19956552) FT /rpt_family="THE" FT /note="91% identity: matches 272..373 of consensus" FT repeat_region complement(19956507..19956812) FT /rpt_family="THE" FT /note="86% identity: matches 1..308 of consensus" FT repeat_region 19956960..19957042 FT /rpt_family="THE" FT /note="86% identity: matches 71..154 of consensus" FT exon 19958413..19958484 FT /note="GENSCAN prediction, score = 6.02" FT exon 19958476..19958564 FT /note="XPOUND prediction, score = 0.479" FT exon 19959105..19959117 FT /note="XPOUND prediction, score = 0.525" FT exon 19959988..19960149 FT /note="GENSCAN prediction, score = 1.35" FT /note="MZEF prediction, score = 0.972" FT repeat_region 19960171..19960209 FT /rpt_type=INVERTED FT /note="IR8, 84% complementary to IR8' (81271..81309)" FT repeat_region 19960174..19960195 FT /note="AC repeat" FT repeat_region 19960174..19960215 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 85.7%, counts = 21" FT repeat_region 19960286..19960360 FT /rpt_family="ttcca repeat" FT /rpt_type=TANDEM FT /note="homology = 73.3%, counts = 15" FT repeat_region 19960319..19960334 FT /note="CCTTC repeat" FT repeat_region 19960335..19960352 FT /note="ATTCT repeat" FT repeat_region 19961018..19961056 FT /rpt_type=INVERTED FT /note="IR8', 84% complementary to IR8 (80424..80462)" FT repeat_region 19961022..19961050 FT /note="GT repeat" FT repeat_region 19961022..19961053 FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 96.9%, counts = 16" FT repeat_region 19961063..19961164 FT /rpt_family="ga repeat" FT /rpt_type=TANDEM FT /note="homology = 75.5%, counts = 51" FT repeat_region 19961139..19961164 FT /note="GA repeat" FT repeat_region 19961169..19961228 FT /rpt_family="L1" FT /note="98% identity: matches 146..205 of consensus" FT repeat_region 19961222..19961234 FT /note="ATA repeat" FT repeat_region complement(19962196..19963042) FT /rpt_family="L1" FT /note="96% identity: matches 167..1018 of consensus" FT exon 19962279..19962288 FT /note="XPOUND prediction, score = 0.202" FT exon complement(19962445..19962596) FT /note="MZEF prediction, score = 0.604" FT repeat_region 19963042..19964214 FT /rpt_family="L1" FT /note="95% identity: matches 4684..5856 of consensus" FT exon 19963061..19963080 FT /note="XPOUND prediction, score = 0.214" FT exon complement(19963275..19963318) FT /note="XPOUND prediction, score = 0.299" FT exon 19963279..19963364 FT /note="XPOUND prediction, score = 0.374" FT exon 19964019..19964063 FT /note="XPOUND prediction, score = 0.276" FT repeat_region 19964236..19964349 FT /rpt_family="L1" FT /note="98% identity: matches 208..321 of consensus" FT repeat_region 19964365..19964384 FT /note="AAT repeat" FT exon 19964552..19964581 FT /note="XPOUND prediction, score = 0.268" FT exon 19964660..19964728 FT /note="GENSCAN prediction, score = 0.06" FT exon complement(19964792..19964816) FT /note="XPOUND prediction, score = 0.244" FT exon 19964868..19964894 FT /note="XPOUND prediction, score = 0.333" FT exon complement(19965034..19965070) FT /note="XPOUND prediction, score = 0.225" FT exon complement(19965793..19965885) FT /note="MZEF prediction, score = 0.843" FT exon complement(19967089..19967151) FT /note="MZEF prediction, score = 0.520" FT repeat_region 19967297..19967325 FT /rpt_type=INVERTED FT /note="IR9, 89% complementary to IR9' (87583..87612)" FT repeat_region 19967330..19967359 FT /rpt_type=INVERTED FT /note="IR9', 89% complementary to IR9 (87550..87578)" FT exon 19967968..19968034 FT /note="MZEF prediction, score = 0.882" FT repeat_region 19968302..19968315 FT /note="TTTTC repeat" FT exon complement(19968991..19969058) FT /note="XPOUND prediction, score = 0.517" FT repeat_region 19969182..19969223 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 21" FT repeat_region 19969182..19969224 FT /note="CA repeat" FT exon 19969617..19969754 FT /note="GENSCAN prediction, score = 2.18" FT repeat_region 19969691..19969702 FT /note="AG repeat" FT exon complement(19971729..19971785) FT /note="XPOUND prediction, score = 0.748" FT repeat_region 19971761..19971779 FT /note="ATG repeat" FT repeat_region 19972194..19972245 FT /rpt_family="ag repeat" FT /rpt_type=TANDEM FT /note="homology = 75.0%, counts = 26" FT repeat_region 19972200..19972211 FT /note="AG repeat" FT repeat_region 19972231..19972242 FT /note="GA repeat" FT repeat_region 19973076..19973117 FT /rpt_family="ALU" FT /note="92% identity: matches 427..468 of consensus" FT exon 19974884..19974983 FT /note="MZEF prediction, score = 0.629" FT repeat_region 19975755..19975770 FT /note="TTTTG repeat" FT exon complement(19975896..19976037) FT /note="MZEF prediction, score = 0.903" FT repeat_region 19975899..19975917 FT /note="TTTG repeat" FT repeat_region complement(19976080..19976170) FT /rpt_family="ALU" FT /note="87% identity: matches 308..398 of consensus" FT repeat_region 19976082..19976171 FT /rpt_family="L1" FT /note="85% identity: matches 836..925 of consensus" FT repeat_region 19976244..19976390 FT /rpt_family="THE" FT /note="82% identity: matches 1..147 of consensus" FT repeat_region 19976474..19976630 FT /rpt_family="THE" FT /note="83% identity: matches 50..206 of consensus" FT repeat_region 19977110..19977149 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 95.0%, counts = 20" FT repeat_region 19977112..19977146 FT /note="TG repeat" FT exon complement(19977316..19977325) FT /note="XPOUND prediction, score = 0.261" FT exon 19981406..19981463 FT /note="MZEF prediction, score = 0.797" FT repeat_region 19983093..19983158 FT /rpt_family="L1" FT /note="86% identity: matches 1200..1265 of consensus" FT repeat_region complement(19983370..19983554) FT /rpt_family="L1" FT /note="89% identity: matches 331..517 of consensus" FT repeat_region 19983372..19983640 FT /rpt_family="ALU" FT /note="88% identity: matches 12..273 of consensus" FT exon complement(19983496..19983637) FT /note="MZEF prediction, score = 0.901" FT repeat_region 19983641..19983654 FT /note="AAAAG repeat" FT repeat_region 19984156..19984211 FT /rpt_family="L1" FT /note="89% identity: matches 1498..1553 of consensus" FT repeat_region 19984443..19984720 FT /rpt_family="ALU" FT /note="87% identity: matches 157..433 of consensus" FT repeat_region complement(19984453..19984554) FT /rpt_family="L1" FT /note="93% identity: matches 464..565 of consensus" FT repeat_region 19984707..19984720 FT /note="AAAT repeat" FT repeat_region 19984983..19985016 FT /rpt_family="ALU" FT /note="97% identity: matches 392..425 of consensus" FT repeat_region 19985932..19986060 FT /rpt_family="L1" FT /note="86% identity: matches 491..619 of consensus" FT repeat_region 19986144..19986192 FT /rpt_family="L1" FT /note="91% identity: matches 810..858 of consensus" FT repeat_region 19986471..19986619 FT /rpt_family="L1" FT /note="83% identity: matches 456..602 of consensus" FT repeat_region 19986574..19986584 FT /note="TA repeat" FT exon 19986743..19986795 FT /note="MZEF prediction, score = 0.568" FT exon complement(19987560..19987605) FT /note="XPOUND prediction, score = 0.532" FT exon complement(19987560..19987655) FT /note="GENSCAN prediction, score = 5.56" FT /note="MZEF prediction, score = 0.794" FT exon complement(19987845..19987854) FT /note="XPOUND prediction, score = 0.323" FT exon complement(19987899..19987918) FT /note="XPOUND prediction, score = 0.222" FT exon 19989872..19989928 FT /note="MZEF prediction, score = 0.664" FT exon complement(19990291..19990303) FT /note="XPOUND prediction, score = 0.450" FT repeat_region 19990332..19990602 FT /rpt_family="ALU" FT /note="86% identity: matches 152..421 of consensus" FT exon complement(19990350..19990604) FT /note="MZEF prediction, score = 0.648" FT repeat_region complement(19990363..19990602) FT /rpt_family="L1" FT /note="83% identity: matches 250..490 of consensus" FT repeat_region 19990607..19990694 FT /rpt_family="aaaaaaacaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 75.0%, counts = 8" FT repeat_region 19990624..19990637 FT /note="AAAAC repeat" FT repeat_region 19990921..19990934 FT /note="AT repeat" FT repeat_region 19990921..19990986 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /rpt_type=INVERTED FT /note="homology = 74.2%, counts = 33" FT /note="IR10, 85% complementary to IR10' (111257..111322)" FT repeat_region 19990987..19991066 FT /rpt_family="cata repeat" FT /rpt_type=TANDEM FT /note="homology = 85.0%, counts = 20" FT repeat_region 19991004..19991069 FT /rpt_type=INVERTED FT /note="IR10', 85% complementary to IR10 (111174..111239)" FT repeat_region 19991014..19991024 FT /note="AC repeat" FT repeat_region 19991034..19991066 FT /note="ACAT repeat" FT exon complement(19992265..19992341) FT /note="XPOUND prediction, score = 0.622" FT exon complement(19992494..19992547) FT /note="MZEF prediction, score = 0.699" FT exon complement(19993598..19993651) FT /note="XPOUND prediction, score = 0.420" FT repeat_region 19994291..19994312 FT /note="AAAAC repeat" FT exon complement(19994704..19994706) FT /note="XPOUND prediction, score = 0.200" FT exon complement(19994989..19995018) FT /note="XPOUND prediction, score = 0.212" FT exon complement(19995806..19995879) FT /note="MZEF prediction, score = 0.785" FT repeat_region complement(19996468..19996575) FT /rpt_family="L1" FT /note="87% identity: matches 477..585 of consensus" FT repeat_region 19996477..19996743 FT /rpt_family="ALU" FT /note="85% identity: matches 19..278 of consensus" FT repeat_region complement(19996605..19996706) FT /rpt_family="L1" FT /note="87% identity: matches 194..295 of consensus" FT exon complement(19996808..19996841) FT /note="XPOUND prediction, score = 0.264" FT repeat_region 19997996..19998055 FT /rpt_family="aat repeat" FT /rpt_type=TANDEM FT /note="homology = 70.0%, counts = 20" FT exon complement(20001273..20001282) FT /note="XPOUND prediction, score = 0.371" FT exon complement(20004248..20004385) FT /note="GENSCAN prediction, score = 10.41" FT exon complement(20004835..20004846) FT /note="XPOUND prediction, score = 0.253" FT exon complement(20005426..20005435) FT /note="XPOUND prediction, score = 0.206" FT exon complement(20005585..20005693) FT /note="MZEF prediction, score = 0.664" FT repeat_region 20005631..20005646 FT /note="GGTGG repeat" FT repeat_region 20006373..20006572 FT /rpt_family="L1" FT /note="85% identity: matches 10..210 of consensus" FT repeat_region 20006545..20006608 FT /rpt_family="L1" FT /note="92% identity: matches 51..114 of consensus" FT repeat_region 20006608..20006633 FT /rpt_type=INVERTED FT /note="IR11, 84% complementary to IR11' (128142..128167)" FT exon complement(20006716..20006737) FT /note="XPOUND prediction, score = 0.319" FT exon 20006750..20006834 FT /note="MZEF prediction, score = 0.527" FT exon complement(20006991..20007043) FT /note="MZEF prediction, score = 0.517" FT exon complement(20007258..20007286) FT /note="XPOUND prediction, score = 0.217" FT repeat_region 20007495..20007578 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 69.0%, counts = 42" FT repeat_region 20007849..20007918 FT /rpt_family="ctttttttttattt repeat" FT /rpt_type=TANDEM FT /note="homology = 75.7%, counts = 5" FT repeat_region 20007889..20007914 FT /rpt_type=INVERTED FT /note="IR11', 84% complementary to IR11 (126861..126886)" FT repeat_region complement(20007922..20008182) FT /rpt_family="ALU" FT /note="86% identity: matches 347..606 of consensus" FT repeat_region 20007926..20008173 FT /rpt_family="L1" FT /note="84% identity: matches 175..418 of consensus" FT repeat_region complement(20009268..20009306) FT /rpt_family="L1" FT /note="94% identity: matches 388..426 of consensus" FT repeat_region 20009268..20009336 FT /rpt_family="THR" FT /note="92% identity: matches 97..165 of consensus" FT exon complement(20010172..20010221) FT /note="XPOUND prediction, score = 0.539" FT repeat_region complement(20010623..20010746) FT /rpt_family="L1" FT /note="95% identity: matches 444..567 of consensus" FT repeat_region complement(20010785..20011421) FT /rpt_family="L1" FT /note="95% identity: matches 371..1006 of consensus" FT exon complement(20011232..20011266) FT /note="XPOUND prediction, score = 0.233" FT repeat_region complement(20012145..20012474) FT /rpt_family="THE" FT /note="86% identity: matches 14..345 of consensus" FT repeat_region 20012499..20012554 FT /rpt_family="L1" FT /note="91% identity: matches 1228..1283 of consensus" FT repeat_region 20013526..20013603 FT /rpt_family="L1" FT /note="86% identity: matches 1219..1297 of consensus" FT repeat_region 20013784..20013886 FT /rpt_family="L1" FT /note="82% identity: matches 272..374 of consensus" FT repeat_region complement(20013925..20013971) FT /rpt_family="L1" FT /note="91% identity: matches 550..596 of consensus" FT repeat_region 20013936..20014197 FT /rpt_family="ALU" FT /note="80% identity: matches 189..451 of consensus" FT repeat_region complement(20014052..20014111) FT /rpt_family="L1" FT /note="90% identity: matches 747..806 of consensus" FT exon complement(20014070..20014080) FT /note="XPOUND prediction, score = 0.208" FT repeat_region 20014494..20014515 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 11" FT repeat_region 20014494..20014516 FT /note="AT repeat" FT repeat_region 20014517..20014528 FT /note="CA repeat" FT repeat_region 20014608..20014725 FT /rpt_family="L1" FT /note="83% identity: matches 41..158 of consensus" FT exon 20014869..20014904 FT /note="MZEF prediction, score = 0.615" FT repeat_region 20016725..20016737 FT /note="AC repeat" FT repeat_region 20016725..20016750 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 92.3%, counts = 13" FT repeat_region 20017016..20017030 FT /note="TTTTA repeat" FT repeat_region complement(20017039..20017318) FT /rpt_family="ALU" FT /note="88% identity: matches 1..281 of consensus" FT repeat_region 20017045..20017105 FT /rpt_family="L1" FT /note="91% identity: matches 167..227 of consensus" FT repeat_region 20017053..20017300 FT /rpt_type=INVERTED FT /note="IR12, 78% complementary to IR12' (139053..139300)" FT repeat_region 20017132..20017299 FT /rpt_family="L1" FT /note="86% identity: matches 746..914 of consensus" FT repeat_region complement(20017966..20018244) FT /rpt_family="ALU" FT /note="89% identity: matches 1..279 of consensus" FT repeat_region 20017966..20018244 FT /rpt_family="L1" FT /note="86% identity: matches 248..526 of consensus" FT exon complement(20018146..20018202) FT /note="XPOUND prediction, score = 0.381" FT exon complement(20018466..20018565) FT /note="XPOUND prediction, score = 0.759" FT repeat_region 20018490..20018561 FT /rpt_family="cttcttctc repeat" FT /rpt_type=TANDEM FT /note="homology = 76.4%, counts = 8" FT STS 20018671..20018797 FT /standard_name="SHGC-51155 (D11S4945), Map: 4, Homo FT sapiens" FT /note="GenBank Accession Number: G34242" FT repeat_region 20018737..20018750 FT /note="TAT repeat" FT repeat_region 20018800..20019047 FT /rpt_type=INVERTED FT /note="IR12', 78% complementary to IR12 (137306..137553)" FT repeat_region 20018805..20018972 FT /rpt_family="ALU" FT /note="84% identity: matches 26..193 of consensus" FT repeat_region 20019060..20019251 FT /rpt_family="aaag repeat" FT /rpt_type=TANDEM FT /note="homology = 82.8%, counts = 48" FT repeat_region 20019082..20019313 FT /note="AGAA repeat" FT repeat_region complement(20019362..20019554) FT /rpt_family="L1" FT /note="91% identity: matches 767..959 of consensus" FT repeat_region 20019554..20019870 FT /rpt_family="L1" FT /note="93% identity: matches 464..780 of consensus" FT repeat_region 20019893..20020706 FT /rpt_family="L1" FT /note="90% identity: matches 627..1440 of consensus" FT repeat_region 20020716..20020729 FT /note="AATA repeat" FT exon 20021189..20021219 FT /note="MZEF prediction, score = 0.933" FT repeat_region 20021345..20021406 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 79.0%, counts = 31" FT repeat_region 20021348..20021369 FT /note="TA repeat" FT exon complement(20021464..20021515) FT /note="XPOUND prediction, score = 0.513" FT exon 20021467..20021567 FT /note="MZEF prediction, score = 0.798" FT exon complement(20022522..20022585) FT /note="XPOUND prediction, score = 0.750" FT repeat_region 20022739..20022751 FT /note="CAAA repeat" FT exon complement(20023486..20023513) FT /note="XPOUND prediction, score = 0.330" FT exon complement(20024211..20024277) FT /note="XPOUND prediction, score = 0.347" FT repeat_region 20024355..20024367 FT /note="AC repeat" FT repeat_region 20024664..20024675 FT /note="GT repeat" FT repeat_region 20025138..20025153 FT /note="TCTAT repeat" FT exon complement(20025591..20025775) FT /note="GENSCAN prediction, score = 8.21" FT exon complement(20026604..20026620) FT /note="XPOUND prediction, score = 0.253" FT repeat_region 20026671..20026860 FT /rpt_family="L1" FT /note="84% identity: matches 11..201 of consensus" FT exon complement(20026747..20026784) FT /note="XPOUND prediction, score = 0.350" FT repeat_region 20026888..20026930 FT /rpt_family="L1" FT /note="93% identity: matches 42..84 of consensus" FT misc_feature 20072091 FT /note="Clone_left_end: RP11-594J14" FT misc_feature 20074091..20235657 FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon complement(20076136..20076146) FT /note="XPOUND prediction, score = 0.326" FT exon 20076393..20076585 FT /note="GENSCAN prediction, score = 4.43" FT repeat_region 20076833..20076868 FT /rpt_type=INVERTED FT /note="IR1, 88% complementary to IR1' (2781..2816)" FT repeat_region 20076838..20076848 FT /note="AT repeat" FT repeat_region 20076860..20076879 FT /note="TA repeat" FT repeat_region 20076867..20076961 FT /rpt_family="atatatttatatatatatc repeat" FT /rpt_type=TANDEM FT /note="homology = 76.8%, counts = 5" FT repeat_region 20076871..20076906 FT /rpt_type=INVERTED FT /note="IR1', 88% complementary to IR1 (2743..2778)" FT repeat_region 20076893..20076913 FT /note="TA repeat" FT exon complement(20077988..20078070) FT /note="XPOUND prediction, score = 0.438" FT exon complement(20078206..20078210) FT /note="XPOUND prediction, score = 0.200" FT exon complement(20078390..20078426) FT /note="XPOUND prediction, score = 0.251" FT exon complement(20078712..20078743) FT /note="XPOUND prediction, score = 0.744" FT repeat_region 20078996..20079048 FT /rpt_family="THE" FT /note="92% identity: matches 52..105 of consensus" FT exon 20079117..20079251 FT /note="GENSCAN prediction, score = 3.04" FT repeat_region complement(20079686..20079883) FT /rpt_family="L1" FT /note="96% identity: matches 431..628 of consensus" FT repeat_region 20079881..20081468 FT /rpt_family="L1" FT /note="94% identity: matches 387..1974 of consensus" FT repeat_region 20081504..20081622 FT /rpt_family="L1" FT /note="94% identity: matches 2309..2427 of consensus" FT exon complement(20081539..20081567) FT /note="XPOUND prediction, score = 0.305" FT repeat_region 20081623..20081641 FT /note="ATA repeat" FT exon complement(20082038..20082074) FT /note="XPOUND prediction, score = 0.242" FT exon 20082354..20082609 FT /note="MZEF prediction, score = 0.644" FT exon 20083486..20083522 FT /note="XPOUND prediction, score = 0.256" FT repeat_region 20084027..20084040 FT /note="GCTT repeat" FT exon 20084265..20084277 FT /note="XPOUND prediction, score = 0.235" FT repeat_region 20084424..20084495 FT /rpt_family="cctt repeat" FT /rpt_type=TANDEM FT /note="homology = 73.6%, counts = 18" FT repeat_region 20084441..20084465 FT /note="CTTC repeat" FT repeat_region 20084467..20084483 FT /note="TTTCC repeat" FT repeat_region 20084484..20084496 FT /note="CCCT repeat" FT repeat_region 20084994..20085007 FT /note="TTTGT repeat" FT repeat_region complement(20085009..20085136) FT /rpt_family="ALU" FT /note="86% identity: matches 427..554 of consensus" FT repeat_region complement(20085107..20085165) FT /rpt_family="ALU" FT /note="88% identity: matches 571..629 of consensus" FT repeat_region complement(20085153..20085285) FT /rpt_family="ALU" FT /note="85% identity: matches 12..144 of consensus" FT repeat_region 20085250..20085288 FT /rpt_family="L1" FT /note="94% identity: matches 550..588 of consensus" FT exon 20086816..20086859 FT /note="XPOUND prediction, score = 0.496" FT exon 20087788..20087912 FT /note="XPOUND prediction, score = 0.431" FT exon 20087877..20087912 FT /note="GENSCAN prediction, score = 4.67" FT repeat_region 20087913..20087925 FT /note="GTGA repeat" FT exon 20088386..20088439 FT /note="XPOUND prediction, score = 0.566" FT exon complement(20089071..20089082) FT /note="XPOUND prediction, score = 0.217" FT exon complement(20089121..20089294) FT /note="XPOUND prediction, score = 0.640" FT exon 20089147..20089470 FT /note="GENSCAN prediction, score = 3.58" FT repeat_region 20089788..20089827 FT /rpt_family="acagc repeat" FT /rpt_type=TANDEM FT /note="homology = 85.0%, counts = 8" FT repeat_region 20091134..20091181 FT /rpt_family="agaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 6" FT repeat_region 20091322..20091355 FT /rpt_family="L1" FT /note="97% identity: matches 1889..1922 of consensus" FT repeat_region 20091498..20091554 FT /rpt_family="L1" FT /note="92% identity: matches 1658..1714 of consensus" FT repeat_region 20091598..20091723 FT /rpt_family="L1" FT /note="82% identity: matches 123..243 of consensus" FT repeat_region 20091818..20092087 FT /rpt_family="L1" FT /note="87% identity: matches 122..391 of consensus" FT repeat_region 20092129..20092244 FT /rpt_family="L1" FT /note="84% identity: matches 242..363 of consensus" FT exon complement(20092155..20092230) FT /note="MZEF prediction, score = 0.512" FT repeat_region 20092234..20092256 FT /rpt_type=INVERTED FT /note="IR2, 91% complementary to IR2' (18189..18211)" FT repeat_region 20092279..20092301 FT /rpt_type=INVERTED FT /note="IR2', 91% complementary to IR2 (18144..18166)" FT exon complement(20092362..20092377) FT /note="XPOUND prediction, score = 0.218" FT repeat_region complement(20092377..20092427) FT /rpt_family="MER30" FT /note="96% identity: matches 140..190 of consensus" FT exon 20092859..20092908 FT /note="MZEF prediction, score = 0.642" FT repeat_region complement(20093088..20093359) FT /rpt_family="ALU" FT /note="86% identity: matches 401..671 of consensus" FT exon 20093090..20093386 FT /note="MZEF prediction, score = 0.811" FT exon complement(20093096..20093135) FT /note="XPOUND prediction, score = 0.311" FT repeat_region 20093159..20093342 FT /rpt_family="L1" FT /note="83% identity: matches 383..569 of consensus" FT repeat_region 20095138..20095152 FT /note="TTTTG repeat" FT repeat_region complement(20095703..20095757) FT /rpt_family="THE" FT /note="89% identity: matches 303..359 of consensus" FT repeat_region complement(20095773..20096059) FT /rpt_family="THE" FT /note="84% identity: matches 6..292 of consensus" FT exon complement(20096063..20096124) FT /note="XPOUND prediction, score = 0.343" FT repeat_region 20096067..20096086 FT /note="ATCC repeat" FT repeat_region 20096067..20096126 FT /rpt_family="gtcc repeat" FT /rpt_type=TANDEM FT /note="homology = 90.0%, counts = 15" FT repeat_region 20096087..20096122 FT /note="GTCC repeat" FT repeat_region 20096698..20096841 FT /rpt_family="gtttttttttattttt repeat" FT /rpt_type=TANDEM FT /note="homology = 62.5%, counts = 9" FT exon complement(20097604..20097709) FT /note="MZEF prediction, score = 0.868" FT repeat_region complement(20097759..20098038) FT /rpt_family="ALU" FT /note="94% identity: matches 1..281 of consensus" FT repeat_region 20097759..20098038 FT /rpt_family="L1" FT /note="90% identity: matches 245..526 of consensus" FT misc_feature 20097801..20098040 FT /note="CpG_island (%GC=59.6, o/e=1.00, #CpGs=21)" FT repeat_region complement(20100050..20100082) FT /rpt_family="ALU" FT /note="100% identity: matches 233..265 of consensus" FT repeat_region 20100177..20100193 FT /note="TG repeat" FT repeat_region 20100177..20100242 FT /rpt_family="tttgtt repeat" FT /rpt_type=TANDEM FT /note="homology = 75.8%, counts = 11" FT repeat_region 20100215..20100238 FT /note="TTTTG repeat" FT repeat_region 20100817..20100830 FT /note="TTTTG repeat" FT exon complement(20101186..20101197) FT /note="XPOUND prediction, score = 0.217" FT exon complement(20101219..20101230) FT /note="XPOUND prediction, score = 0.268" FT exon 20101526..20101683 FT /note="MZEF prediction, score = 0.830" FT repeat_region 20102269..20102309 FT /rpt_family="L1" FT /note="95% identity: matches 5653..5693 of consensus" FT repeat_region 20102322..20102487 FT /rpt_family="L1" FT /note="92% identity: matches 700..865 of consensus" FT repeat_region 20102516..20102637 FT /rpt_family="L1" FT /note="94% identity: matches 1328..1449 of consensus" FT exon complement(20102571..20102580) FT /note="XPOUND prediction, score = 0.206" FT exon complement(20102586..20102599) FT /note="XPOUND prediction, score = 0.228" FT repeat_region 20102713..20103725 FT /rpt_family="L1" FT /note="87% identity: matches 9..1011 of consensus" FT exon complement(20102866..20102879) FT /note="XPOUND prediction, score = 0.210" FT exon 20103740..20104129 FT /note="GENSCAN prediction, score = 34.07" FT repeat_region 20103781..20108693 FT /rpt_family="L1" FT /note="95% identity: matches 951..5869 of consensus" FT exon 20105244..20105833 FT /note="GENSCAN prediction, score = 8.04" FT repeat_region 20105404..20105417 FT /note="CACCA repeat" FT exon 20105923..20107078 FT /note="GENSCAN prediction, score = 30.26" FT repeat_region 20107508..20107521 FT /note="GAACA repeat" FT repeat_region 20108715..20108844 FT /rpt_family="L1" FT /note="95% identity: matches 315..444 of consensus" FT repeat_region 20108842..20108898 FT /rpt_family="ata repeat" FT /rpt_type=TANDEM FT /note="homology = 70.2%, counts = 19" FT repeat_region complement(20108987..20109068) FT /rpt_family="MER7" FT /note="85% identity: matches 9..90 of consensus" FT exon complement(20111167..20111242) FT /note="XPOUND prediction, score = 0.257" FT repeat_region 20114637..20114650 FT /note="ATTC repeat" FT exon complement(20115705..20115832) FT /note="MZEF prediction, score = 0.573" FT exon complement(20116497..20116535) FT /note="XPOUND prediction, score = 0.266" FT repeat_region 20119028..20119087 FT /rpt_family="aaagaactgaacgcagcctt repeat" FT /rpt_type=TANDEM FT /note="homology = 85.0%, counts = 3" FT repeat_region 20120271..20120400 FT /rpt_family="L1" FT /note="86% identity: matches 1193..1322 of consensus" FT repeat_region 20120930..20120943 FT /note="TA repeat" FT repeat_region complement(20122412..20122683) FT /rpt_family="L1" FT /note="86% identity: matches 245..517 of consensus" FT repeat_region 20122417..20122683 FT /rpt_family="ALU" FT /note="88% identity: matches 1..267 of consensus" FT repeat_region 20124377..20124390 FT /note="AAG repeat" FT exon 20128255..20128386 FT /note="MZEF prediction, score = 0.899" FT repeat_region 20129612..20129655 FT /rpt_family="L1" FT /note="93% identity: matches 1286..1329 of consensus" FT repeat_region 20129927..20129962 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 18" FT repeat_region 20129927..20129963 FT /note="AC repeat" FT exon complement(20130866..20130977) FT /note="MZEF prediction, score = 0.889" FT repeat_region 20133215..20133228 FT /note="CATG repeat" FT repeat_region 20133240..20133256 FT /note="AC repeat" FT exon complement(20134089..20134104) FT /note="XPOUND prediction, score = 0.211" FT repeat_region 20135273..20135402 FT /rpt_family="tttttaattacaa repeat" FT /rpt_type=TANDEM FT /note="homology = 83.1%, counts = 10" FT repeat_region 20135290..20135343 FT /rpt_type=INVERTED FT /note="IR3, 83% complementary to IR3' (61256..61309)" FT repeat_region 20135346..20135399 FT /rpt_type=INVERTED FT /note="IR3', 83% complementary to IR3 (61200..61253)" FT exon 20135406..20135477 FT /note="MZEF prediction, score = 0.797" FT exon 20136093..20136145 FT /note="MZEF prediction, score = 0.755" FT exon complement(20138849..20138897) FT /note="XPOUND prediction, score = 0.562" FT STS 20138975..20139110 FT /standard_name="WI-1295 (D9S782), Map: FT 782_(C,D,E)_(2,9,12), Homo sapiens" FT /note="GenBank Accession Number: G03199" FT exon complement(20139941..20140004) FT /note="XPOUND prediction, score = 0.305" FT repeat_region 20141225..20141243 FT /rpt_type=INVERTED FT /note="IR4, 94% complementary to IR4' (67156..67174)" FT repeat_region 20141246..20141264 FT /rpt_type=INVERTED FT /note="IR4', 94% complementary to IR4 (67135..67153)" FT repeat_region 20141797..20142091 FT /rpt_type=INVERTED FT /note="IR5, 81% complementary to IR5' (68513..68806)" FT repeat_region 20141810..20142075 FT /rpt_family="ALU" FT /note="83% identity: matches 10..276 of consensus" FT repeat_region complement(20141811..20141923) FT /rpt_family="L1" FT /note="85% identity: matches 472..585 of consensus" FT repeat_region 20142081..20142092 FT /note="AAT repeat" FT repeat_region 20142603..20142896 FT /rpt_type=INVERTED FT /note="IR5', 81% complementary to IR5 (67707..68001)" FT repeat_region 20142645..20142873 FT /rpt_family="L1" FT /note="87% identity: matches 193..418 of consensus" FT repeat_region complement(20142645..20142892) FT /rpt_family="ALU" FT /note="87% identity: matches 1..246 of consensus" FT exon 20143125..20143254 FT /note="GENSCAN prediction, score = 6.36" FT repeat_region 20143632..20143647 FT /note="TGAA repeat" FT repeat_region 20144593..20144604 FT /note="GAG repeat" FT exon 20145288..20145300 FT /note="XPOUND prediction, score = 0.237" FT repeat_region 20145417..20145441 FT /rpt_type=INVERTED FT /note="IR6, 88% complementary to IR6' (71470..71494)" FT repeat_region 20145560..20145584 FT /rpt_type=INVERTED FT /note="IR6', 88% complementary to IR6 (71327..71351)" FT repeat_region 20145765..20145810 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 76.1%, counts = 23" FT repeat_region 20145882..20145935 FT /rpt_family="ataaaatttgattttata repeat" FT /rpt_type=TANDEM FT /note="homology = 87.0%, counts = 3" FT exon 20146147..20146277 FT /note="MZEF prediction, score = 0.692" FT exon complement(20146884..20146999) FT /note="MZEF prediction, score = 0.946" FT exon complement(20147151..20147478) FT /note="MZEF prediction, score = 0.845" FT exon complement(20147872..20147906) FT /note="XPOUND prediction, score = 0.219" FT exon complement(20147909..20147917) FT /note="XPOUND prediction, score = 0.207" FT exon complement(20148428..20148458) FT /note="XPOUND prediction, score = 0.249" FT exon 20149526..20149585 FT /note="MZEF prediction, score = 0.828" FT exon complement(20150130..20150140) FT /note="XPOUND prediction, score = 0.266" FT repeat_region 20150163..20150199 FT /rpt_type=INVERTED FT /note="IR7, 83% complementary to IR7' (77282..77317)" FT repeat_region 20151372..20151407 FT /rpt_type=INVERTED FT /note="IR7', 83% complementary to IR7 (76073..76109)" FT exon complement(20151419..20151535) FT /note="GENSCAN prediction, score = 2.56" FT repeat_region 20153033..20153258 FT /rpt_type=INVERTED FT /note="IR8, 91% complementary to IR8' (79582..79802)" FT exon complement(20153459..20153511) FT /note="MZEF prediction, score = 0.644" FT repeat_region 20153672..20153892 FT /rpt_type=INVERTED FT /note="IR8', 91% complementary to IR8 (78943..79168)" FT exon 20153689..20153819 FT /note="MZEF prediction, score = 0.538" FT exon 20154860..20154917 FT /note="GENSCAN prediction, score = 3.02" FT repeat_region 20155128..20155157 FT /rpt_family="gaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 5" FT exon complement(20155308..20155312) FT /note="XPOUND prediction, score = 0.204" FT exon complement(20155314..20155330) FT /note="XPOUND prediction, score = 0.328" FT exon 20155645..20155755 FT /note="MZEF prediction, score = 0.857" FT exon complement(20156027..20156043) FT /note="XPOUND prediction, score = 0.366" FT exon complement(20157282..20157294) FT /note="XPOUND prediction, score = 0.238" FT exon complement(20157793..20157825) FT /note="MZEF prediction, score = 0.702" FT exon 20160668..20160759 FT /note="MZEF prediction, score = 0.555" FT repeat_region 20160846..20160917 FT /rpt_family="taaaacagaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 76.4%, counts = 6" FT repeat_region 20161420..20161469 FT /rpt_family="L1" FT /note="92% identity: matches 799..848 of consensus" FT repeat_region 20161752..20161801 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 82.0%, counts = 25" FT repeat_region 20161756..20161784 FT /note="AC repeat" FT repeat_region 20162399..20164978 FT /rpt_family="L1" FT /note="95% identity: matches 3279..5858 of consensus" FT exon 20163110..20164452 FT /note="GENSCAN prediction, score = 25.47" FT exon 20163407..20163558 FT /note="MZEF prediction, score = 0.502" FT repeat_region 20165001..20165136 FT /rpt_family="L1" FT /note="98% identity: matches 208..343 of consensus" FT exon complement(20165024..20165091) FT /note="XPOUND prediction, score = 0.520" FT repeat_region 20165128..20165140 FT /note="ATA repeat" FT repeat_region complement(20166952..20167003) FT /rpt_family="ALU" FT /note="94% identity: matches 281..332 of consensus" FT repeat_region 20166952..20167003 FT /rpt_family="L1" FT /note="92% identity: matches 748..799 of consensus" FT repeat_region 20167479..20167493 FT /note="ATAG repeat" FT repeat_region complement(20167815..20167881) FT /rpt_family="ALU" FT /note="86% identity: matches 136..202 of consensus" FT exon complement(20167930..20167965) FT /note="XPOUND prediction, score = 0.483" FT repeat_region complement(20169296..20169441) FT /rpt_family="MER25" FT /note="81% identity: matches 863..1009 of consensus" FT repeat_region 20170014..20170129 FT /rpt_family="L1" FT /note="83% identity: matches 49..156 of consensus" FT repeat_region 20170121..20170168 FT /rpt_family="aacaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 77.1%, counts = 8" FT repeat_region 20170148..20170210 FT /rpt_family="L1" FT /note="92% identity: matches 167..229 of consensus" FT exon 20170502..20170559 FT /note="GENSCAN prediction, score = 5.92" FT repeat_region 20170733..20171291 FT /rpt_family="L1" FT /note="83% identity: matches 227..787 of consensus" FT exon 20171154..20171315 FT /note="GENSCAN prediction, score = 0.43" FT repeat_region 20171327..20172164 FT /rpt_family="L1" FT /note="85% identity: matches 437..1274 of consensus" FT repeat_region 20172177..20172339 FT /rpt_family="L1" FT /note="84% identity: matches 2893..3058 of consensus" FT repeat_region 20172296..20172471 FT /rpt_family="aaagaaaaaac repeat" FT /rpt_type=TANDEM FT /note="homology = 59.1%, counts = 16" FT repeat_region 20172413..20172681 FT /rpt_family="L1" FT /note="86% identity: matches 1532..1798 of consensus" FT repeat_region 20172751..20172883 FT /rpt_family="L1" FT /note="90% identity: matches 3328..3460 of consensus" FT repeat_region 20172921..20173549 FT /rpt_family="L1" FT /note="86% identity: matches 1971..2605 of consensus" FT repeat_region 20173587..20173621 FT /rpt_family="aaaaatt repeat" FT /rpt_type=TANDEM FT /note="homology = 88.6%, counts = 5" FT repeat_region 20173620..20174325 FT /rpt_family="L1" FT /note="85% identity: matches 2671..3378 of consensus" FT repeat_region 20174344..20174475 FT /rpt_family="L1" FT /note="89% identity: matches 4917..5045 of consensus" FT repeat_region 20174517..20174680 FT /rpt_family="L1" FT /note="86% identity: matches 278..442 of consensus" FT repeat_region 20174703..20174920 FT /rpt_family="L1" FT /note="86% identity: matches 466..683 of consensus" FT repeat_region 20174986..20174999 FT /note="AT repeat" FT repeat_region 20175016..20175032 FT /note="TA repeat" FT repeat_region 20175048..20175336 FT /rpt_family="L1" FT /note="84% identity: matches 598..883 of consensus" FT exon complement(20176583..20176627) FT /note="XPOUND prediction, score = 0.340" FT exon 20179122..20179169 FT /note="MZEF prediction, score = 0.771" FT exon complement(20179234..20179309) FT /note="XPOUND prediction, score = 0.609" FT exon complement(20179395..20179516) FT /note="XPOUND prediction, score = 0.470" FT repeat_region 20181371..20182776 FT /rpt_family="L1" FT /note="88% identity: matches 3516..4925 of consensus" FT exon complement(20183858..20183892) FT /note="XPOUND prediction, score = 0.418" FT repeat_region 20183982..20184246 FT /rpt_family="L1" FT /note="84% identity: matches 232..495 of consensus" FT repeat_region 20184266..20184326 FT /rpt_family="ALU" FT /note="90% identity: matches 1..60 of consensus" FT repeat_region 20184299..20184540 FT /rpt_family="ALU" FT /note="87% identity: matches 180..421 of consensus" FT repeat_region complement(20184355..20184544) FT /rpt_family="L1" FT /note="84% identity: matches 162..353 of consensus" FT repeat_region 20184545..20184560 FT /note="CAAA repeat" FT repeat_region 20184546..20184602 FT /rpt_family="aaaaaaacaaaagaaaaca repeat" FT /rpt_type=TANDEM FT /note="homology = 87.7%, counts = 3" FT repeat_region 20185395..20185662 FT /rpt_family="ALU" FT /note="94% identity: matches 14..282 of consensus" FT repeat_region complement(20185395..20185662) FT /rpt_family="L1" FT /note="91% identity: matches 245..513 of consensus" FT repeat_region 20185675..20185693 FT /note="AAAAG repeat" FT exon complement(20186137..20186182) FT /note="XPOUND prediction, score = 0.430" FT exon complement(20186903..20186988) FT /note="MZEF prediction, score = 0.635" FT repeat_region 20187113..20187129 FT /note="CCCAT repeat" FT exon 20189096..20189427 FT /note="GENSCAN prediction, score = 5.23" FT repeat_region 20189926..20189940 FT /note="GGGAG repeat" FT STS 20191708..20192023 FT /standard_name="SHGC-83196 (D11S4975), Map: 10, Homo FT sapiens" FT /note="GenBank Accession Number: G48729" FT repeat_region 20192375..20192388 FT /note="AT repeat" FT exon complement(20193340..20193386) FT /note="MZEF prediction, score = 0.552" FT repeat_region 20193821..20193839 FT /note="TTTTG repeat" FT exon complement(20194297..20194318) FT /note="XPOUND prediction, score = 0.215" FT exon complement(20194350..20194385) FT /note="XPOUND prediction, score = 0.331" FT exon 20194582..20194595 FT /note="XPOUND prediction, score = 0.218" FT repeat_region 20194831..20194872 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 85.7%, counts = 21" FT repeat_region 20194862..20194872 FT /note="CA repeat" FT repeat_region 20195450..20195540 FT /rpt_type=INVERTED FT /note="IR9, 75% complementary to IR9' (121827..121914)" FT repeat_region 20195917..20196004 FT /rpt_type=INVERTED FT /note="IR9', 75% complementary to IR9 (121360..121450)" FT repeat_region 20196307..20196320 FT /note="TGAAG repeat" FT repeat_region 20197414..20197426 FT /note="TC repeat" FT repeat_region complement(20197456..20197513) FT /rpt_family="ALU" FT /note="89% identity: matches 397..454 of consensus" FT repeat_region complement(20197544..20197709) FT /rpt_family="ALU" FT /note="85% identity: matches 646..811 of consensus" FT repeat_region 20197597..20197716 FT /rpt_family="L1" FT /note="87% identity: matches 464..583 of consensus" FT exon 20197869..20197886 FT /note="XPOUND prediction, score = 0.210" FT exon complement(20198036..20198155) FT /note="GENSCAN prediction, score = 4.69" FT exon complement(20198493..20198558) FT /note="GENSCAN prediction, score = 2.88" FT exon 20198544..20198568 FT /note="XPOUND prediction, score = 0.245" FT repeat_region 20198650..20198683 FT /note="TC repeat" FT repeat_region 20198650..20198705 FT /rpt_family="tc repeat" FT /rpt_type=TANDEM FT /note="homology = 80.4%, counts = 28" FT repeat_region 20199133..20199147 FT /note="ATTTT repeat" FT repeat_region 20199702..20199723 FT /note="TTTC repeat" FT repeat_region complement(20199744..20199859) FT /rpt_family="L1" FT /note="90% identity: matches 296..411 of consensus" FT repeat_region 20199781..20199862 FT /rpt_family="L1" FT /note="89% identity: matches 696..780 of consensus" FT repeat_region complement(20199902..20200013) FT /rpt_family="ALU" FT /note="91% identity: matches 472..584 of consensus" FT repeat_region 20199902..20200027 FT /rpt_family="L1" FT /note="87% identity: matches 469..595 of consensus" FT exon complement(20200136..20200276) FT /note="GENSCAN prediction, score = 2.93" FT exon 20201401..20201515 FT /note="XPOUND prediction, score = 0.351" FT exon 20201849..20201873 FT /note="XPOUND prediction, score = 0.445" FT repeat_region 20202049..20202092 FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 22" FT repeat_region 20202049..20202092 FT /note="GT repeat" FT exon 20202113..20202175 FT /note="XPOUND prediction, score = 0.577" FT exon complement(20202343..20202460) FT /note="XPOUND prediction, score = 0.364" FT repeat_region 20203678..20203717 FT /rpt_family="aaaaaagaag repeat" FT /rpt_type=TANDEM FT /note="homology = 87.5%, counts = 4" FT repeat_region 20203692..20203717 FT /note="AAG repeat" FT repeat_region 20203718..20203729 FT /note="CAG repeat" FT exon complement(20204534..20204565) FT /note="XPOUND prediction, score = 0.624" FT repeat_region 20204741..20205045 FT /rpt_type=INVERTED FT /note="IR10, 83% complementary to IR10' (131272..131577)" FT repeat_region complement(20204760..20205031) FT /rpt_family="ALU" FT /note="86% identity: matches 314..583 of consensus" FT repeat_region 20204760..20205031 FT /rpt_family="L1" FT /note="82% identity: matches 245..515 of consensus" FT repeat_region 20205362..20205667 FT /rpt_type=INVERTED FT /note="IR10', 83% complementary to IR10 (130651..130955)" FT repeat_region complement(20205386..20205490) FT /rpt_family="L1" FT /note="90% identity: matches 401..505 of consensus" FT repeat_region 20205387..20205647 FT /rpt_family="ALU" FT /note="86% identity: matches 23..280 of consensus" FT repeat_region complement(20205509..20205643) FT /rpt_family="L1" FT /note="82% identity: matches 250..384 of consensus" FT exon complement(20205510..20205523) FT /note="XPOUND prediction, score = 0.265" FT exon 20206309..20206428 FT /note="MZEF prediction, score = 0.778" FT repeat_region 20206479..20206503 FT /note="TTA repeat" FT repeat_region 20206504..20206632 FT /rpt_family="L1" FT /note="90% identity: matches 159..287 of consensus" FT repeat_region complement(20206504..20206776) FT /rpt_family="ALU" FT /note="88% identity: matches 1..278 of consensus" FT repeat_region 20206635..20206762 FT /rpt_family="L1" FT /note="89% identity: matches 298..424 of consensus" FT exon complement(20206679..20206727) FT /note="XPOUND prediction, score = 0.593" FT exon complement(20206996..20207066) FT /note="MZEF prediction, score = 0.577" FT repeat_region 20207114..20207129 FT /note="GAAT repeat" FT exon complement(20208766..20208791) FT /note="XPOUND prediction, score = 0.315" FT exon complement(20209484..20209493) FT /note="XPOUND prediction, score = 0.212" FT exon complement(20209781..20209959) FT /note="MZEF prediction, score = 0.591" FT exon complement(20210229..20210238) FT /note="XPOUND prediction, score = 0.204" FT repeat_region 20210473..20210650 FT /rpt_type=INVERTED FT /note="IR11, 81% complementary to IR11' (137259..137438)" FT repeat_region complement(20210499..20210635) FT /rpt_family="ALU" FT /note="97% identity: matches 129..265 of consensus" FT repeat_region 20210499..20210635 FT /rpt_family="L1" FT /note="90% identity: matches 254..390 of consensus" FT misc_feature 20210502..20210633 FT /note="CpG_island (%GC=68.2, o/e=0.76, #CpGs=13)" FT repeat_region complement(20210674..20210801) FT /rpt_family="ALU" FT /note="93% identity: matches 1..128 of consensus" FT repeat_region 20210674..20210801 FT /rpt_family="L1" FT /note="89% identity: matches 399..526 of consensus" FT exon complement(20211140..20211148) FT /note="XPOUND prediction, score = 0.210" FT repeat_region complement(20211233..20211360) FT /rpt_family="L1" FT /note="85% identity: matches 465..592 of consensus" FT repeat_region 20211233..20211510 FT /rpt_family="ALU" FT /note="90% identity: matches 233..509 of consensus" FT repeat_region complement(20211341..20211516) FT /rpt_family="L1" FT /note="85% identity: matches 155..330 of consensus" FT repeat_region 20211349..20211528 FT /rpt_type=INVERTED FT /note="IR11', 81% complementary to IR11 (136383..136560)" FT repeat_region complement(20212386..20212499) FT /rpt_family="L1" FT /note="91% identity: matches 464..577 of consensus" FT repeat_region 20212388..20212549 FT /rpt_family="ALU" FT /note="91% identity: matches 21..182 of consensus" FT exon complement(20212524..20212563) FT /note="MZEF prediction, score = 0.873" FT repeat_region 20212784..20212837 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 74.1%, counts = 27" FT repeat_region 20212785..20212807 FT /rpt_type=INVERTED FT /note="IR12, 91% complementary to IR12' (139413..139435)" FT repeat_region 20212914..20213146 FT /rpt_family="L1" FT /note="85% identity: matches 2274..2504 of consensus" FT repeat_region 20213503..20213525 FT /rpt_type=INVERTED FT /note="IR12', 91% complementary to IR12 (138695..138717)" FT repeat_region complement(20214341..20214612) FT /rpt_family="L1" FT /note="83% identity: matches 245..515 of consensus" FT repeat_region 20214351..20214612 FT /rpt_family="ALU" FT /note="87% identity: matches 24..285 of consensus" FT repeat_region complement(20215008..20215097) FT /rpt_family="THE" FT /note="88% identity: matches 71..160 of consensus" FT exon 20215069..20215119 FT /note="MZEF prediction, score = 0.531" FT repeat_region complement(20215152..20215229) FT /rpt_family="THE" FT /note="84% identity: matches 129..206 of consensus" FT exon complement(20215610..20215761) FT /note="GENSCAN prediction, score = 9.86" FT exon complement(20216234..20216277) FT /note="XPOUND prediction, score = 0.363" FT exon complement(20216540..20216550) FT /note="XPOUND prediction, score = 0.243" FT repeat_region 20218417..20218428 FT /note="CAC repeat" FT exon complement(20219257..20219312) FT /note="XPOUND prediction, score = 0.502" FT exon complement(20219924..20219952) FT /note="XPOUND prediction, score = 0.384" FT repeat_region 20220208..20220233 FT /rpt_type=INVERTED FT /note="IR13, 84% complementary to IR13' (146879..146904)" FT repeat_region 20220969..20220994 FT /rpt_type=INVERTED FT /note="IR13', 84% complementary to IR13 (146118..146143)" FT repeat_region 20221120..20221132 FT /note="AGA repeat" FT exon complement(20221161..20221218) FT /note="XPOUND prediction, score = 0.392" FT exon complement(20221236..20221245) FT /note="XPOUND prediction, score = 0.239" FT repeat_region 20221436..20221449 FT /note="AAAC repeat" FT repeat_region 20223366..20223439 FT /rpt_family="ALU" FT /note="87% identity: matches 1078..1151 of consensus" FT repeat_region complement(20223384..20223439) FT /rpt_family="L1" FT /note="89% identity: matches 837..892 of consensus" FT repeat_region 20223780..20223793 FT /note="AAAAC repeat" FT repeat_region complement(20223807..20223960) FT /rpt_family="THE" FT /note="85% identity: matches 201..356 of consensus" FT repeat_region complement(20224031..20224166) FT /rpt_family="THE" FT /note="86% identity: matches 8..142 of consensus" FT repeat_region 20224648..20224722 FT /rpt_family="aagggaggggagaag repeat" FT /rpt_type=TANDEM FT /note="homology = 77.3%, counts = 5" FT repeat_region 20224662..20224675 FT /note="GAGGG repeat" FT repeat_region 20224692..20224717 FT /note="GAGG repeat" FT exon complement(20224732..20224777) FT /note="XPOUND prediction, score = 0.685" FT exon 20225094..20225160 FT /note="MZEF prediction, score = 0.829" FT repeat_region 20225550..20225572 FT /note="TA repeat" FT repeat_region 20225562..20225601 FT /rpt_type=INVERTED FT /note="IR14, 75% complementary to IR14' (152631..152670)" FT repeat_region 20225776..20225787 FT /note="TAA repeat" FT repeat_region 20225922..20226001 FT /rpt_family="ggaaggag repeat" FT /rpt_type=TANDEM FT /note="homology = 70.0%, counts = 10" FT exon 20226288..20226355 FT /note="MZEF prediction, score = 0.834" FT exon 20226313..20226355 FT /note="XPOUND prediction, score = 0.243" FT exon 20226643..20226669 FT /note="XPOUND prediction, score = 0.268" FT repeat_region 20226721..20226760 FT /rpt_type=INVERTED FT /note="IR14', 75% complementary to IR14 (151472..151511)" FT exon 20226809..20226828 FT /note="XPOUND prediction, score = 0.208" FT exon 20227553..20227599 FT /note="MZEF prediction, score = 0.677" FT exon 20228164..20228443 FT /note="MZEF prediction, score = 0.945" FT exon 20228490..20228661 FT /note="MZEF prediction, score = 0.555" FT exon 20228492..20228526 FT /note="XPOUND prediction, score = 0.308" FT repeat_region 20229736..20229748 FT /note="TTA repeat" FT repeat_region complement(20229763..20229868) FT /rpt_family="L1" FT /note="93% identity: matches 158..263 of consensus" FT exon 20229785..20229816 FT /note="XPOUND prediction, score = 0.474" FT repeat_region complement(20229909..20234411) FT /rpt_family="L1" FT /note="94% identity: matches 1343..5856 of consensus" FT exon complement(20231727..20232491) FT /note="GENSCAN prediction, score = 17.34" FT exon complement(20232983..20233407) FT /note="MZEF prediction, score = 0.666" FT exon complement(20233829..20234485) FT /note="GENSCAN prediction, score = 21.32" FT exon complement(20233982..20234150) FT /note="MZEF prediction, score = 0.850" FT repeat_region complement(20234489..20235386) FT /rpt_family="L1" FT /note="90% identity: matches 486..1382 of consensus" FT exon 20234995..20235112 FT /note="XPOUND prediction, score = 0.467" FT repeat_region complement(20235111..20235654) FT /rpt_family="L1" FT /note="88% identity: matches 201..746 of consensus" FT misc_feature 20235658..20361132 FT /note="annotated region of clone" FT mRNA complement(join(20341663..20346572,20353523..20353594, FT 20354806..20354877,20360740..20360839, FT AL513498.2:31468..31597,AL513498.2:33661..33736, FT AL513498.2:81713..82417,AL513498.2:116115..116258, FT AL513498.2:124696..124778,AL354879.12:12621..12801, FT AL354879.12:14212..14510)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-001" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /note="match: cDNAs: Em:BC036089.1 Em:D16688.1 Em:L13744.1" FT /note="match: ESTs: Em:AA406302.1 Em:AA442076.1 FT Em:AA443284.1 Em:AI336478.1 Em:AI554049.1 Em:AI620408.1 FT Em:AI739108.1 Em:AI768397.1 Em:AL535503.1 Em:AL565947.1 FT Em:AW044186.1 Em:AW163788.1 Em:AW302520.1 Em:AW451255.1 FT Em:AW572468.1 Em:BF104863.1 Em:BF510928.1 Em:BG940265.1 FT Em:BG958583.1 Em:BI550359.1 Em:BI561777.1 Em:BI710808.1 FT Em:BM018568.1 Em:BU623899.1 Em:CA418678.1 Em:H18503.1 FT Em:H99306.1 Em:N56884.1" FT CDS complement(join(20346441..20346572,20353523..20353594, FT 20354806..20354877,20360740..20360839, FT AL513498.2:31468..31597,AL513498.2:33661..33736, FT AL513498.2:81713..82417,AL513498.2:116115..116258, FT AL513498.2:124696..124778,AL354879.12:12621..12801, FT AL354879.12:14212..14223)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-001" FT /standard_name="OTTHUMP00000021127" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /note="match: proteins: Sw:P42568 Sw:Q03111 Tr:Q6LEQ8 FT Tr:Q8VDR6 Tr:Q99MK4" FT /protein_id="CAH70705.1" FT /translation="MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQ FT HFVEKVVFHLHESFPRPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDL FT FLHLEGHPPVNHLRCEKLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSS FT SSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPS FT RDHNKSSKESSKKPKENKPLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAP FT SKRPPISDSEELSAKKRKKSSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKI FT ESETSEKKKSTLPPFDDIVDPNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQ FT QGPLRSIMKDLHSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSA FT SSPLHHEPPPPLLKTNNNQILEVKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTL FT RERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS" FT CDS complement(join(20346441..20346572,20353523..20353594, FT 20354806..20354877,20360740..20360839, FT AL513498.2:31468..31580)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-002" FT /standard_name="OTTHUMP00000021128" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /protein_id="CAH70706.1" FT /translation="MKDLHSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLSDGS FT DSESSSASSPLHHEPPPPLLKTNNNQILEVKSPIKQSKSDKQIKNGECDKAYLDELVEL FT HRRLMTLRERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS" FT CDS complement(join(20346441..20346572,20354806..20354877, FT 20360740..20360839,AL513498.2:31468..31580)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-006" FT /standard_name="OTTHUMP00000021129" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /protein_id="CAH70707.1" FT /translation="MKDLHSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLSDGS FT DSESSSASSPLHHEPPPPLLKTNNNQILEVKSPIKQSKSDKQIKNGECDKIVNLIEETG FT HFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS" FT mRNA complement(join(20346291..20346572,20360740..20360839, FT AL513498.2:31468..31561)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-007" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /note="match: ESTs: Em:N66033.1" FT mRNA complement(join(20346404..20346572,20353523..20353594, FT 20354806..20354877,20360740..20360839, FT AL513498.2:31468..31597,AL513498.2:33661..33736, FT AL513498.2:50373..50461)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-002" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /note="match: ESTs: Em:BF243978.1 Em:BG940264.1 FT Em:BM793722.1" FT mRNA complement(join(20346351..20346572,20353523..20353594, FT 20354806..20354877,AL513498.2:50373..50463)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-005" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /note="match: ESTs: Em:BU664780.1" FT mRNA complement(join(20345075..20346572,20354806..20354877, FT 20360740..20360839,AL513498.2:31468..31597, FT AL513498.2:33661..33736,AL513498.2:50373..50479)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-006" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /note="match: cDNAs: Em:AK019458.1" FT mRNA complement(join(20360751..20360839,AL513498.2:31468..31597, FT AL513498.2:33661..33736,AL513498.2:48199..48319, FT AL513498.2:50373..50444)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-003" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /note="match: ESTs: Em:N95149.1" FT mRNA complement(join(20360740..20360839,AL513498.2:31468..31597, FT AL513498.2:33661..33736,AL513498.2:78553..78662, FT AL513498.2:79808..79954)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-004" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /note="match: ESTs: Em:BF969793.1" FT misc_feature 20278851 FT /note="Clone_left_end: RP11-336O12" FT misc_feature 20307976 FT /note="Clone_right_end: RP11-15P13" FT CDS 20331444..20332275 FT /pseudo FT /locus_tag="RP11-15P13.1-001" FT /product="survival of motor neuron 1, telomeric (SMN1) FT pseudogene" FT /note="match: proteins: Sw:O02771 Sw:O35876 Sw:P97801 FT Sw:Q16637 Sw:Q16637 Sw:Q16637 Tr:Q549U5" FT polyA_site complement(20341663) FT polyA_signal complement(20341689..20341694) FT misc_feature 20332007..20487786 FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon complement(20362679..20362689) FT /note="XPOUND prediction, score = 0.215" FT exon complement(20363474..20363593) FT /note="XPOUND prediction, score = 0.863" FT exon complement(20363474..20363603) FT /note="GENSCAN prediction, score = 19.03" FT /note="GRAIL, score = 100%, comment = excellent" FT /note="MZEF prediction, score = 0.980" FT repeat_region 20364363..20364373 FT /note="AC repeat" FT repeat_region 20364671..20364684 FT /note="TTTTA repeat" FT exon complement(20365056..20365233) FT /note="GRAIL, score = 47%, comment = marginal" FT repeat_region 20365322..20365356 FT /rpt_family="gtttt repeat" FT /rpt_type=TANDEM FT /note="homology = 88.6%, counts = 7" FT repeat_region 20365328..20365346 FT /note="TTTTG repeat" FT repeat_region complement(20365356..20365526) FT /rpt_family="ALU" FT /note="88% identity: matches 411..583 of consensus" FT repeat_region 20365356..20365526 FT /rpt_family="L1" FT /note="83% identity: matches 245..418 of consensus" FT repeat_region 20365539..20365587 FT /rpt_family="L1" FT /note="91% identity: matches 420..468 of consensus" FT exon complement(20365539..20365591) FT /note="XPOUND prediction, score = 0.314" FT repeat_region complement(20365539..20365612) FT /rpt_family="ALU" FT /note="91% identity: matches 36..109 of consensus" FT exon 20365657..20365732 FT /note="XPOUND prediction, score = 0.342" FT exon complement(20365667..20365707) FT /note="XPOUND prediction, score = 0.258" FT repeat_region 20365694..20365723 FT /rpt_family="agctgg repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 5" FT repeat_region complement(20366064..20366780) FT /rpt_family="L1" FT /note="90% identity: matches 727..1449 of consensus" FT repeat_region 20366779..20366849 FT /rpt_family="L1" FT /note="85% identity: matches 334..404 of consensus" FT repeat_region 20369355..20369365 FT /note="AC repeat" FT repeat_region complement(20370237..20370355) FT /rpt_family="MER37" FT /note="84% identity: matches 22..139 of consensus" FT exon complement(20370255..20370267) FT /note="XPOUND prediction, score = 0.299" FT repeat_region complement(20370526..20370794) FT /rpt_family="ALU" FT /note="87% identity: matches 177..442 of consensus" FT repeat_region 20370603..20370800 FT /rpt_family="L1" FT /note="82% identity: matches 388..588 of consensus" FT repeat_region complement(20370828..20370894) FT /rpt_family="MER37" FT /note="86% identity: matches 133..201 of consensus" FT repeat_region 20370828..20371024 FT /rpt_family="MER37" FT /note="83% identity: matches 3..195 of consensus" FT repeat_region complement(20370886..20371013) FT /rpt_family="MER37" FT /note="84% identity: matches 380..507 of consensus" FT exon complement(20371001..20371032) FT /note="XPOUND prediction, score = 0.500" FT exon 20371231..20371478 FT /note="GRAIL, score = 68%, comment = good" FT exon 20371541..20371596 FT /note="GRAIL, score = 57%, comment = good" FT repeat_region complement(20371569..20371685) FT /rpt_family="MER37" FT /note="82% identity: matches 129..241 of consensus" FT repeat_region complement(20371892..20372052) FT /rpt_family="MER37" FT /note="83% identity: matches 25..185 of consensus" FT repeat_region 20372031..20372096 FT /rpt_family="MER37" FT /note="86% identity: matches 271..336 of consensus" FT repeat_region 20372113..20372188 FT /rpt_family="MER37" FT /note="85% identity: matches 109..184 of consensus" FT repeat_region 20372392..20372406 FT /note="TTTC repeat" FT repeat_region complement(20372415..20372477) FT /rpt_family="ALU" FT /note="92% identity: matches 215..277 of consensus" FT repeat_region 20372419..20372476 FT /rpt_family="L1" FT /note="89% identity: matches 166..223 of consensus" FT exon complement(20372459..20372508) FT /note="XPOUND prediction, score = 0.408" FT repeat_region complement(20372481..20372552) FT /rpt_family="ALU" FT /note="97% identity: matches 105..176 of consensus" FT repeat_region 20372481..20372552 FT /rpt_family="L1" FT /note="88% identity: matches 322..393 of consensus" FT repeat_region 20372577..20372725 FT /rpt_type=INVERTED FT /note="IR2, 79% complementary to IR2' (42073..42224)" FT repeat_region 20372580..20372705 FT /rpt_family="L1" FT /note="94% identity: matches 401..526 of consensus" FT repeat_region complement(20372580..20372706) FT /rpt_family="ALU" FT /note="96% identity: matches 290..416 of consensus" FT exon complement(20373009..20373030) FT /note="XPOUND prediction, score = 0.399" FT repeat_region 20374079..20374230 FT /rpt_type=INVERTED FT /note="IR2', 79% complementary to IR2 (40571..40719)" FT repeat_region complement(20374107..20374197) FT /rpt_family="L1" FT /note="85% identity: matches 498..588 of consensus" FT repeat_region 20374119..20374199 FT /rpt_family="ALU" FT /note="87% identity: matches 925..1005 of consensus" FT repeat_region 20374232..20374292 FT /rpt_family="ALU" FT /note="90% identity: matches 133..193 of consensus" FT repeat_region 20374234..20374390 FT /rpt_type=INVERTED FT /note="IR3, 77% complementary to IR3' (43609..43766)" FT repeat_region 20374263..20374329 FT /rpt_family="ALU" FT /note="92% identity: matches 646..712 of consensus" FT repeat_region 20375074..20375156 FT /rpt_family="THE" FT /note="84% identity: matches 17..95 of consensus" FT repeat_region 20375599..20375612 FT /note="TTTTC repeat" FT repeat_region 20375615..20375772 FT /rpt_type=INVERTED FT /note="IR3', 77% complementary to IR3 (42228..42384)" FT repeat_region 20375624..20375900 FT /rpt_family="L1" FT /note="88% identity: matches 245..521 of consensus" FT repeat_region complement(20375624..20375903) FT /rpt_family="ALU" FT /note="92% identity: matches 3..282 of consensus" FT exon 20376449..20376491 FT /note="GRAIL, score = 59%, comment = good" FT exon 20377895..20378027 FT /note="MZEF prediction, score = 0.517" FT repeat_region 20379712..20379722 FT /note="AC repeat" FT exon complement(20379730..20379784) FT /note="MZEF prediction, score = 0.766" FT exon complement(20380215..20380292) FT /note="GRAIL, score = 91%, comment = excellent" FT exon 20383201..20383253 FT /note="MZEF prediction, score = 0.986" FT exon 20385980..20386010 FT /note="GRAIL, score = 75%, comment = excellent" FT exon complement(20386163..20386172) FT /note="XPOUND prediction, score = 0.401" FT exon 20386427..20386534 FT /note="GRAIL, score = 42%, comment = marginal" FT repeat_region 20386795..20386805 FT /note="AT repeat" FT exon 20387027..20387091 FT /note="GRAIL, score = 77%, comment = excellent" FT exon 20387731..20387866 FT /note="MZEF prediction, score = 0.618" FT repeat_region complement(20388313..20388585) FT /rpt_family="L1" FT /note="86% identity: matches 245..518 of consensus" FT repeat_region 20388315..20388585 FT /rpt_family="ALU" FT /note="91% identity: matches 313..583 of consensus" FT repeat_region 20389072..20389196 FT /rpt_family="L1" FT /note="81% identity: matches 481..605 of consensus" FT repeat_region complement(20389493..20389583) FT /rpt_family="L1" FT /note="83% identity: matches 843..933 of consensus" FT repeat_region 20389494..20389591 FT /rpt_family="ALU" FT /note="87% identity: matches 908..1005 of consensus" FT repeat_region 20390830..20390875 FT /rpt_family="ALU" FT /note="91% identity: matches 43..88 of consensus" FT exon 20391291..20391374 FT /note="MZEF prediction, score = 0.997" FT exon 20391291..20391403 FT /note="GRAIL, score = 99%, comment = excellent" FT exon complement(20392046..20392140) FT /note="GENSCAN prediction, score = 1.29" FT repeat_region 20392892..20393155 FT /rpt_family="ALU" FT /note="91% identity: matches 21..284 of consensus" FT repeat_region complement(20392893..20393155) FT /rpt_family="L1" FT /note="85% identity: matches 159..417 of consensus" FT repeat_region 20395284..20395295 FT /note="ATT repeat" FT exon complement(20396606..20396724) FT /note="GRAIL, score = 64%, comment = good" FT exon complement(20396676..20396724) FT /note="XPOUND prediction, score = 0.716" FT exon complement(20397503..20397515) FT /note="XPOUND prediction, score = 0.208" FT exon complement(20397955..20397979) FT /note="XPOUND prediction, score = 0.326" FT repeat_region 20398898..20398912 FT /note="AAAC repeat" FT exon 20398951..20399012 FT /note="MZEF prediction, score = 0.766" FT repeat_region 20399245..20399265 FT /rpt_type=INVERTED FT /note="IR4, 100% complementary to IR4' (67285..67305)" FT repeat_region 20399291..20399311 FT /rpt_type=INVERTED FT /note="IR4', 100% complementary to IR4 (67239..67259)" FT exon 20400155..20400280 FT /note="GRAIL, score = 66%, comment = good" FT exon complement(20400195..20400280) FT /note="GRAIL, score = 73%, comment = good shadow" FT exon complement(20400401..20400434) FT /note="MZEF prediction, score = 0.911" FT exon 20401470..20401658 FT /note="GRAIL, score = 81%, comment = excellent" FT exon complement(20401901..20402025) FT /note="GENSCAN prediction, score = 3.36" FT exon complement(20401927..20401973) FT /note="XPOUND prediction, score = 0.623" FT exon complement(20401927..20402025) FT /note="MZEF prediction, score = 0.589" FT exon 20402007..20402089 FT /note="MZEF prediction, score = 0.694" FT exon complement(20402480..20402501) FT /note="XPOUND prediction, score = 0.282" FT exon 20402819..20402950 FT /note="GRAIL, score = 79%, comment = excellent" FT exon 20403835..20403960 FT /note="MZEF prediction, score = 0.959" FT repeat_region complement(20403854..20403949) FT /rpt_family="ALU" FT /note="85% identity: matches 650..745 of consensus" FT repeat_region 20403976..20404121 FT /rpt_type=INVERTED FT /note="IR5, 81% complementary to IR5' (73819..73963)" FT repeat_region complement(20404000..20404114) FT /rpt_family="ALU" FT /note="85% identity: matches 5..119 of consensus" FT repeat_region complement(20404566..20404620) FT /rpt_family="ALU" FT /note="89% identity: matches 518..572 of consensus" FT repeat_region 20404699..20404798 FT /rpt_family="L1" FT /note="86% identity: matches 831..930 of consensus" FT repeat_region complement(20404702..20404803) FT /rpt_family="ALU" FT /note="86% identity: matches 1..101 of consensus" FT repeat_region 20404910..20404923 FT /note="AGGA repeat" FT exon complement(20405023..20405095) FT /note="XPOUND prediction, score = 0.717" FT exon complement(20405528..20405553) FT /note="XPOUND prediction, score = 0.284" FT repeat_region 20405825..20405969 FT /rpt_type=INVERTED FT /note="IR5', 81% complementary to IR5 (71970..72115)" FT repeat_region 20405828..20406063 FT /rpt_family="ALU" FT /note="88% identity: matches 1111..1346 of consensus" FT repeat_region complement(20405839..20406103) FT /rpt_family="L1" FT /note="82% identity: matches 318..585 of consensus" FT repeat_region 20406164..20406218 FT /rpt_family="ALU" FT /note="89% identity: matches 39..93 of consensus" FT repeat_region 20406620..20406632 FT /note="TTTC repeat" FT exon complement(20406709..20406770) FT /note="MZEF prediction, score = 0.890" FT repeat_region 20407762..20407777 FT /note="AAT repeat" FT exon complement(20408218..20408227) FT /note="XPOUND prediction, score = 0.255" FT exon 20408493..20408811 FT /note="GRAIL, score = 49%, comment = marginal" FT exon 20409889..20409965 FT /note="MZEF prediction, score = 0.617" FT exon 20410085..20410176 FT /note="GRAIL, score = 58%, comment = good" FT exon complement(20410559..20410640) FT /note="MZEF prediction, score = 0.583" FT repeat_region 20411145..20411179 FT /rpt_type=INVERTED FT /note="IR6, 85% complementary to IR6' (79197..79231)" FT repeat_region 20411203..20411237 FT /rpt_type=INVERTED FT /note="IR6', 85% complementary to IR6 (79139..79173)" FT exon complement(20413719..20413865) FT /note="GRAIL, score = 100%, comment = excellent" FT exon complement(20413719..20414423) FT /note="GENSCAN prediction, score = 97.62" FT /note="MZEF prediction, score = 0.995" FT exon complement(20413727..20413841) FT /note="XPOUND prediction, score = 0.712" FT exon 20413874..20413887 FT /note="XPOUND prediction, score = 0.434" FT exon 20413880..20414031 FT /note="MZEF prediction, score = 0.529" FT exon complement(20413943..20414423) FT /note="GRAIL, score = 96%, comment = excellent" FT exon 20414256..20414406 FT /note="XPOUND prediction, score = 0.925" FT repeat_region 20414278..20414400 FT /rpt_family="ctg repeat" FT /rpt_type=TANDEM FT /note="homology = 96.7%, counts = 41" FT repeat_region 20414278..20414400 FT /note="CTG repeat" FT exon complement(20414774..20414796) FT /note="XPOUND prediction, score = 0.494" FT repeat_region 20415781..20415791 FT /note="AT repeat" FT repeat_region 20417169..20417210 FT /rpt_type=INVERTED FT /note="IR7, 83% complementary to IR7' (85348..85390)" FT repeat_region 20417180..20417210 FT /note="TA repeat" FT repeat_region 20417333..20417417 FT /rpt_family="tatataatatatatata repeat" FT /rpt_type=TANDEM FT /note="homology = 76.5%, counts = 5" FT repeat_region 20417354..20417396 FT /rpt_type=INVERTED FT /note="IR7', 83% complementary to IR7 (85163..85204)" FT repeat_region 20417362..20417379 FT /note="AT repeat" FT repeat_region 20417394..20417406 FT /note="AT repeat" FT repeat_region complement(20418623..20418664) FT /rpt_family="ALU" FT /note="92% identity: matches 404..445 of consensus" FT repeat_region complement(20420710..20420835) FT /rpt_family="L1" FT /note="95% identity: matches 441..566 of consensus" FT repeat_region 20420986..20421239 FT /rpt_family="ALU" FT /note="89% identity: matches 1..254 of consensus" FT repeat_region complement(20420994..20421255) FT /rpt_family="L1" FT /note="85% identity: matches 167..424 of consensus" FT repeat_region 20421221..20421268 FT /rpt_type=INVERTED FT /note="IR8, 87% complementary to IR8' (91062..91108)" FT repeat_region 20421262..20421286 FT /note="AAAT repeat" FT repeat_region 20421262..20421345 FT /rpt_family="aaaaaaaaaaataa repeat" FT /rpt_type=TANDEM FT /note="homology = 71.4%, counts = 6" FT repeat_region 20421841..20421851 FT /note="AG repeat" FT exon 20422522..20422668 FT /note="GRAIL, score = 48%, comment = marginal" FT exon 20422806..20422869 FT /note="MZEF prediction, score = 0.565" FT repeat_region 20423068..20423114 FT /rpt_type=INVERTED FT /note="IR8', 87% complementary to IR8 (89215..89262)" FT repeat_region complement(20423081..20423114) FT /rpt_family="ALU" FT /note="97% identity: matches 406..439 of consensus" FT repeat_region 20423115..20423188 FT /rpt_type=INVERTED FT /note="IR9, 87% complementary to IR9' (91813..91886)" FT exon 20423432..20423534 FT /note="MZEF prediction, score = 0.673" FT repeat_region complement(20423528..20423633) FT /rpt_family="L1" FT /note="83% identity: matches 831..936 of consensus" FT repeat_region 20423537..20423647 FT /rpt_family="ALU" FT /note="84% identity: matches 152..262 of consensus" FT repeat_region 20423663..20423717 FT /rpt_family="ALU" FT /note="90% identity: matches 133..187 of consensus" FT repeat_region 20423726..20423787 FT /rpt_family="ALU" FT /note="91% identity: matches 319..380 of consensus" FT repeat_region 20423816..20423827 FT /note="GTG repeat" FT repeat_region 20423819..20423892 FT /rpt_type=INVERTED FT /note="IR9', 87% complementary to IR9 (91109..91182)" FT repeat_region 20423893..20423926 FT /rpt_family="ALU" FT /note="97% identity: matches 406..439 of consensus" FT repeat_region 20423996..20424104 FT /rpt_family="MER2" FT /note="84% identity: matches 17..125 of consensus" FT exon complement(20425051..20425060) FT /note="XPOUND prediction, score = 0.689" FT exon 20428468..20428551 FT /note="GRAIL, score = 45%, comment = marginal" FT repeat_region 20429147..20429193 FT /rpt_family="ALU" FT /note="91% identity: matches 7..53 of consensus" FT repeat_region 20429212..20429348 FT /rpt_family="ALU" FT /note="86% identity: matches 359..495 of consensus" FT exon 20429907..20429958 FT /note="MZEF prediction, score = 0.585" FT exon complement(20430501..20430508) FT /note="XPOUND prediction, score = 0.203" FT STS 20431617..20431933 FT /standard_name="SHGC-100087 (D11S4975), Map: 9, Homo FT sapiens" FT /note="GenBank Accession Number: G55049" FT exon 20432111..20432214 FT /note="MZEF prediction, score = 0.964" FT repeat_region complement(20433831..20433956) FT /rpt_family="L1" FT /note="88% identity: matches 401..526 of consensus" FT repeat_region 20433836..20433956 FT /rpt_family="ALU" FT /note="91% identity: matches 451..571 of consensus" FT repeat_region 20433970..20434095 FT /rpt_family="ALU" FT /note="90% identity: matches 136..261 of consensus" FT repeat_region complement(20433970..20434117) FT /rpt_family="L1" FT /note="83% identity: matches 161..309 of consensus" FT repeat_region 20434076..20434117 FT /rpt_family="ALU" FT /note="95% identity: matches 232..273 of consensus" FT exon complement(20434614..20434624) FT /note="XPOUND prediction, score = 0.739" FT repeat_region 20435208..20435221 FT /note="TTCT repeat" FT repeat_region complement(20435259..20435309) FT /rpt_family="ALU" FT /note="90% identity: matches 745..795 of consensus" FT repeat_region complement(20435284..20435339) FT /rpt_family="ALU" FT /note="94% identity: matches 440..495 of consensus" FT repeat_region 20437902..20437946 FT /rpt_type=INVERTED FT /note="IR10, 84% complementary to IR10' (106091..106136)" FT repeat_region 20438097..20438142 FT /rpt_type=INVERTED FT /note="IR10', 84% complementary to IR10 (105896..105940)" FT repeat_region complement(20438412..20438459) FT /rpt_family="ALU" FT /note="91% identity: matches 250..297 of consensus" FT repeat_region 20438583..20438612 FT /rpt_family="atttt repeat" FT /rpt_type=TANDEM FT /note="homology = 96.7%, counts = 6" FT repeat_region 20438583..20438612 FT /note="ATTTT repeat" FT repeat_region complement(20438615..20438714) FT /rpt_family="ALU" FT /note="85% identity: matches 19..118 of consensus" FT exon complement(20438961..20438980) FT /note="XPOUND prediction, score = 0.627" FT repeat_region 20439082..20439297 FT /rpt_family="ALU" FT /note="85% identity: matches 12..227 of consensus" FT repeat_region complement(20439093..20439180) FT /rpt_family="L1" FT /note="87% identity: matches 486..574 of consensus" FT repeat_region complement(20439229..20439352) FT /rpt_family="L1" FT /note="83% identity: matches 162..285 of consensus" FT repeat_region 20439353..20439382 FT /rpt_family="caaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 5" FT exon 20439553..20439637 FT /note="MZEF prediction, score = 0.821" FT exon complement(20440465..20440497) FT /note="XPOUND prediction, score = 0.596" FT repeat_region 20443091..20443154 FT /rpt_family="ggaa repeat" FT /rpt_type=TANDEM FT /note="homology = 82.8%, counts = 16" FT repeat_region 20443093..20443109 FT /note="AAGG repeat" FT exon complement(20443588..20443601) FT /note="XPOUND prediction, score = 0.278" FT repeat_region 20444659..20444774 FT /rpt_family="ALU" FT /note="85% identity: matches 696..812 of consensus" FT repeat_region complement(20444699..20444855) FT /rpt_family="L1" FT /note="80% identity: matches 175..331 of consensus" FT repeat_region 20444744..20444869 FT /rpt_family="ALU" FT /note="92% identity: matches 478..602 of consensus" FT repeat_region 20445039..20445090 FT /rpt_family="ALU" FT /note="96% identity: matches 233..284 of consensus" FT repeat_region complement(20445046..20445090) FT /rpt_family="L1" FT /note="93% identity: matches 159..203 of consensus" FT repeat_region 20445857..20445871 FT /note="AAG repeat" FT exon 20447245..20447368 FT /note="GRAIL, score = 57%, comment = good shadow" FT repeat_region 20448068..20448081 FT /note="TTG repeat" FT exon complement(20448121..20448264) FT /note="GENSCAN prediction, score = 13.06" FT /note="GRAIL, score = 100%, comment = excellent" FT /note="MZEF prediction, score = 0.997" FT exon complement(20448599..20448736) FT /note="MZEF prediction, score = 0.712" FT exon complement(20450323..20450360) FT /note="MZEF prediction, score = 0.719" FT repeat_region 20452191..20452267 FT /rpt_family="THE" FT /note="92% identity: matches 1..77 of consensus" FT repeat_region 20452292..20452435 FT /rpt_family="THE" FT /note="86% identity: matches 116..258 of consensus" FT repeat_region 20452411..20452515 FT /rpt_family="THE" FT /note="91% identity: matches 231..335 of consensus" FT repeat_region 20453287..20453538 FT /rpt_family="ALU" FT /note="82% identity: matches 316..565 of consensus" FT repeat_region complement(20453291..20453546) FT /rpt_family="L1" FT /note="80% identity: matches 175..424 of consensus" FT repeat_region 20453558..20453573 FT /note="CAAAA repeat" FT repeat_region 20454231..20454253 FT /note="GT repeat" FT repeat_region 20454231..20454282 FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 78.8%, counts = 26" FT repeat_region 20455958..20456222 FT /rpt_family="L1" FT /note="84% identity: matches 164..424 of consensus" FT repeat_region complement(20455960..20456236) FT /rpt_family="ALU" FT /note="89% identity: matches 1..277 of consensus" FT exon complement(20456702..20456784) FT /note="GENSCAN prediction, score = 6.44" FT /note="GRAIL, score = 86%, comment = excellent shadow" FT /note="MZEF prediction, score = 0.995" FT exon complement(20456870..20456953) FT /note="MZEF prediction, score = 0.975" FT repeat_region complement(20457264..20457526) FT /rpt_family="ALU" FT /note="90% identity: matches 145..407 of consensus" FT repeat_region 20457415..20457535 FT /rpt_family="L1" FT /note="88% identity: matches 465..585 of consensus" FT exon complement(20458090..20458112) FT /note="XPOUND prediction, score = 0.407" FT exon 20458298..20458467 FT /note="GRAIL, score = 76%, comment = excellent" FT repeat_region 20458720..20458785 FT /rpt_family="THE" FT /note="87% identity: matches 95..160 of consensus" FT exon 20459033..20459092 FT /note="MZEF prediction, score = 0.663" FT exon 20459033..20459096 FT /note="GRAIL, score = 91%, comment = excellent" FT exon 20459298..20459400 FT /note="MZEF prediction, score = 0.527" FT exon 20459298..20459404 FT /note="GRAIL, score = 89%, comment = excellent shadow" FT exon complement(20459444..20459611) FT /note="GRAIL, score = 87%, comment = excellent shadow" FT exon complement(20459464..20459603) FT /note="XPOUND prediction, score = 0.775" FT exon complement(20460155..20460227) FT /note="GRAIL, score = 49%, comment = marginal" FT exon complement(20460739..20460812) FT /note="MZEF prediction, score = 0.638" FT exon 20461487..20461538 FT /note="MZEF prediction, score = 0.652" FT exon complement(20461974..20462101) FT /note="GENSCAN prediction, score = 4.88" FT /note="GRAIL, score = 95%, comment = excellent" FT exon complement(20464787..20464831) FT /note="XPOUND prediction, score = 0.282" FT repeat_region 20467117..20467127 FT /note="AG repeat" FT repeat_region 20467311..20467562 FT /rpt_family="ALU" FT /note="92% identity: matches 163..414 of consensus" FT repeat_region complement(20467311..20467574) FT /rpt_family="L1" FT /note="88% identity: matches 161..423 of consensus" FT exon 20467351..20467394 FT /note="GRAIL, score = 49%, comment = marginal" FT exon 20467927..20468115 FT /note="MZEF prediction, score = 0.523" FT exon complement(20468683..20468748) FT /note="MZEF prediction, score = 0.662" FT exon 20470451..20470485 FT /note="GRAIL, score = 45%, comment = marginal shadow" FT exon complement(20470593..20470661) FT /note="GRAIL, score = 76%, comment = excellent" FT repeat_region 20470672..20470707 FT /rpt_type=INVERTED FT /note="IR11, 86% complementary to IR11' (138746..138781)" FT repeat_region 20470752..20470787 FT /rpt_type=INVERTED FT /note="IR11', 86% complementary to IR11 (138666..138701)" FT repeat_region 20471929..20471954 FT /rpt_type=INVERTED FT /note="IR12, 84% complementary to IR12' (140173..140198)" FT repeat_region 20472179..20472204 FT /rpt_type=INVERTED FT /note="IR12', 84% complementary to IR12 (139923..139948)" FT exon complement(20474058..20474108) FT /note="XPOUND prediction, score = 0.656" FT exon complement(20474058..20474163) FT /note="MZEF prediction, score = 0.764" FT repeat_region 20475074..20475089 FT /note="TGAA repeat" FT repeat_region 20475631..20475645 FT /note="AAAAC repeat" FT exon complement(20476635..20476645) FT /note="XPOUND prediction, score = 0.204" FT repeat_region 20477583..20477598 FT /note="AATA repeat" FT exon complement(20478880..20478954) FT /note="XPOUND prediction, score = 0.367" FT repeat_region 20480934..20480947 FT /note="ATAA repeat" FT exon complement(20481490..20481502) FT /note="XPOUND prediction, score = 0.853" FT exon complement(20482890..20482899) FT /note="XPOUND prediction, score = 0.265" FT repeat_region 20483224..20483241 FT /note="ATT repeat" FT repeat_region complement(20483260..20483330) FT /rpt_family="ALU" FT /note="88% identity: matches 367..437 of consensus" FT repeat_region complement(20483350..20483398) FT /rpt_family="ALU" FT /note="91% identity: matches 273..321 of consensus" FT repeat_region 20483426..20483530 FT /rpt_family="L1" FT /note="88% identity: matches 831..935 of consensus" FT repeat_region complement(20483426..20483531) FT /rpt_family="ALU" FT /note="89% identity: matches 540..644 of consensus" FT repeat_region 20483724..20483853 FT /rpt_family="L1" FT /note="86% identity: matches 161..290 of consensus" FT repeat_region complement(20483737..20483996) FT /rpt_family="ALU" FT /note="85% identity: matches 13..265 of consensus" FT repeat_region 20483883..20484008 FT /rpt_family="L1" FT /note="92% identity: matches 401..526 of consensus" FT exon complement(20483910..20483936) FT /note="XPOUND prediction, score = 0.235" FT exon complement(20484597..20484712) FT /note="GENSCAN prediction, score = 0.57" FT exon complement(20484604..20484616) FT /note="XPOUND prediction, score = 0.297" FT exon complement(20484646..20484662) FT /note="XPOUND prediction, score = 0.220" FT repeat_region complement(20485005..20485275) FT /rpt_family="ALU" FT /note="88% identity: matches 12..279 of consensus" FT repeat_region 20485005..20485275 FT /rpt_family="L1" FT /note="82% identity: matches 312..585 of consensus" FT repeat_region 20485744..20485771 FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 92.9%, counts = 14" FT exon 20486145..20486208 FT /note="MZEF prediction, score = 0.647" FT exon complement(20487201..20487228) FT /note="GRAIL, score = 79%, comment = excellent" FT exon 20487423..20487514 FT /note="MZEF prediction, score = 0.675" FT misc_feature 20431501..20607431 FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon 20488528..20488569 FT /note="GRAIL, score = 47%, comment = marginal shadow" FT exon complement(20489335..20489359) FT /note="XPOUND prediction, score = 0.351" FT exon 20489427..20489470 FT /note="MZEF prediction, score = 0.761" FT exon complement(20490034..20490103) FT /note="GENSCAN prediction, score = 6.76" FT /note="GRAIL, score = 69%, comment = good" FT exon complement(20492305..20492321) FT /note="XPOUND prediction, score = 0.236" FT exon complement(20493946..20493993) FT /note="MZEF prediction, score = 0.671" FT exon complement(20494388..20494403) FT /note="GRAIL, score = 70%, comment = good" FT exon complement(20496042..20496066) FT /note="XPOUND prediction, score = 0.290" FT repeat_region 20496544..20496556 FT /note="AC repeat" FT exon 20496656..20496827 FT /note="GRAIL, score = 46%, comment = marginal" FT repeat_region complement(20497995..20498217) FT /rpt_family="L1" FT /note="81% identity: matches 658..878 of consensus" FT repeat_region 20498004..20498217 FT /rpt_family="ALU" FT /note="84% identity: matches 65..272 of consensus" FT repeat_region complement(20498546..20498616) FT /rpt_family="MER30" FT /note="92% identity: matches 134..204 of consensus" FT repeat_region complement(20498651..20498744) FT /rpt_family="MER30" FT /note="87% identity: matches 1..98 of consensus" FT exon complement(20500480..20500601) FT /note="GRAIL, score = 51%, comment = good" FT exon complement(20500799..20500919) FT /note="MZEF prediction, score = 0.551" FT repeat_region 20501004..20501033 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 86.7%, counts = 15" FT repeat_region 20501014..20501024 FT /note="AC repeat" FT misc_feature 20501467..20501751 FT /note="CpG_island (%GC=62.1, o/e=0.83, #CpGs=24)" FT repeat_region complement(20501467..20501755) FT /rpt_family="L1" FT /note="88% identity: matches 245..527 of consensus" FT repeat_region 20501468..20501755 FT /rpt_family="ALU" FT /note="97% identity: matches 413..700 of consensus" FT repeat_region 20501806..20502055 FT /rpt_family="ALU" FT /note="84% identity: matches 9..258 of consensus" FT repeat_region complement(20501808..20501929) FT /rpt_family="L1" FT /note="86% identity: matches 464..585 of consensus" FT repeat_region complement(20501886..20502079) FT /rpt_family="L1" FT /note="86% identity: matches 161..353 of consensus" FT repeat_region 20502264..20502297 FT /rpt_type=INVERTED FT /note="IR4, 91% complementary to IR4' (70806..70839)" FT repeat_region 20502306..20502339 FT /rpt_type=INVERTED FT /note="IR4', 91% complementary to IR4 (70764..70797)" FT exon complement(20502446..20502488) FT /note="XPOUND prediction, score = 0.378" FT repeat_region 20502551..20502597 FT /rpt_family="MER2" FT /note="91% identity: matches 115..161 of consensus" FT repeat_region 20502582..20502710 FT /rpt_family="MER2" FT /note="88% identity: matches 126..254 of consensus" FT exon complement(20502710..20502758) FT /note="XPOUND prediction, score = 0.424" FT repeat_region 20503096..20503223 FT /rpt_family="L1" FT /note="82% identity: matches 1476..1611 of consensus" FT repeat_region 20503171..20503380 FT /rpt_family="L1" FT /note="81% identity: matches 558..767 of consensus" FT repeat_region 20503372..20503482 FT /rpt_family="L1" FT /note="81% identity: matches 100..210 of consensus" FT repeat_region 20503531..20503604 FT /rpt_family="L1" FT /note="85% identity: matches 77..150 of consensus" FT repeat_region 20503787..20504033 FT /rpt_family="L1" FT /note="81% identity: matches 224..475 of consensus" FT repeat_region 20504225..20504327 FT /rpt_family="L1" FT /note="84% identity: matches 125..227 of consensus" FT exon complement(20504237..20504247) FT /note="XPOUND prediction, score = 0.288" FT repeat_region 20504349..20504370 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 11" FT repeat_region 20504349..20504371 FT /note="TG repeat" FT repeat_region 20504413..20504505 FT /rpt_family="L1" FT /note="91% identity: matches 222..314 of consensus" FT repeat_region 20504640..20504695 FT /rpt_family="L1" FT /note="89% identity: matches 702..757 of consensus" FT exon 20504891..20504993 FT /note="GRAIL, score = 80%, comment = excellent" FT exon complement(20505659..20505761) FT /note="GRAIL, score = 77%, comment = excellent" FT exon 20505710..20505796 FT /note="GENSCAN prediction, score = 2.62" FT repeat_region 20506103..20506196 FT /rpt_family="L1" FT /note="88% identity: matches 193..286 of consensus" FT repeat_region complement(20506103..20506208) FT /rpt_family="ALU" FT /note="90% identity: matches 937..1042 of consensus" FT repeat_region 20506230..20506327 FT /rpt_family="L1" FT /note="87% identity: matches 488..585 of consensus" FT repeat_region complement(20506240..20506339) FT /rpt_family="ALU" FT /note="91% identity: matches 1394..1493 of consensus" FT exon 20508948..20509061 FT /note="MZEF prediction, score = 0.750" FT exon 20509914..20509999 FT /note="GRAIL, score = 86%, comment = excellent" FT repeat_region complement(20510330..20510610) FT /rpt_family="L1" FT /note="84% identity: matches 244..525 of consensus" FT repeat_region 20510340..20510610 FT /rpt_family="ALU" FT /note="88% identity: matches 11..280 of consensus" FT exon complement(20511571..20511596) FT /note="XPOUND prediction, score = 0.248" FT repeat_region 20511727..20511778 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 78.8%, counts = 26" FT repeat_region 20511736..20511752 FT /note="ACAT repeat" FT repeat_region 20511767..20511779 FT /note="CA repeat" FT exon 20512296..20512352 FT /note="MZEF prediction, score = 0.500" FT exon complement(20513129..20513163) FT /note="XPOUND prediction, score = 0.364" FT exon complement(20513624..20513633) FT /note="XPOUND prediction, score = 0.466" FT repeat_region complement(20514963..20515232) FT /rpt_family="ALU" FT /note="88% identity: matches 314..583 of consensus" FT repeat_region 20514963..20515243 FT /rpt_family="L1" FT /note="85% identity: matches 245..526 of consensus" FT STS 20515434..20515598 FT /standard_name="SHGC-53630 (D3S3021), Map: 9, Homo sapiens" FT /note="GenBank Accession Number: G36637" FT repeat_region 20515606..20515619 FT /note="TTTTG repeat" FT exon complement(20515800..20515818) FT /note="XPOUND prediction, score = 0.241" FT exon complement(20516754..20516819) FT /note="MZEF prediction, score = 0.802" FT repeat_region 20517553..20517605 FT /rpt_family="ALU" FT /note="90% identity: matches 1085..1137 of consensus" FT repeat_region complement(20517567..20517818) FT /rpt_family="L1" FT /note="83% identity: matches 178..424 of consensus" FT repeat_region 20517580..20517822 FT /rpt_family="ALU" FT /note="85% identity: matches 402..643 of consensus" FT exon 20517883..20517964 FT /note="MZEF prediction, score = 0.506" FT repeat_region 20518034..20518052 FT /note="ATGA repeat" FT repeat_region 20518057..20518170 FT /rpt_family="ALU" FT /note="84% identity: matches 1..107 of consensus" FT repeat_region 20518119..20518321 FT /rpt_family="ALU" FT /note="83% identity: matches 514..715 of consensus" FT repeat_region complement(20518120..20518181) FT /rpt_family="L1" FT /note="88% identity: matches 477..538 of consensus" FT repeat_region complement(20518206..20518322) FT /rpt_family="L1" FT /note="86% identity: matches 182..297 of consensus" FT repeat_region 20518346..20518368 FT /note="AAAC repeat" FT repeat_region 20518346..20518373 FT /rpt_family="aaac repeat" FT /rpt_type=TANDEM FT /note="homology = 92.9%, counts = 7" FT exon complement(20519353..20519366) FT /note="XPOUND prediction, score = 0.310" FT repeat_region 20519597..20519655 FT /rpt_family="L1" FT /note="91% identity: matches 1800..1858 of consensus" FT repeat_region 20519627..20520193 FT /rpt_family="L1" FT /note="85% identity: matches 7..567 of consensus" FT exon complement(20519767..20519792) FT /note="XPOUND prediction, score = 0.310" FT exon 20519958..20520206 FT /note="GRAIL, score = 43%, comment = marginal" FT repeat_region 20520055..20520329 FT /rpt_family="L1" FT /note="86% identity: matches 5..271 of consensus" FT exon complement(20520249..20520259) FT /note="XPOUND prediction, score = 0.386" FT repeat_region 20521060..20521227 FT /rpt_type=INVERTED FT /note="IR5, 75% complementary to IR5' (91318..91485)" FT exon 20521090..20521211 FT /note="MZEF prediction, score = 0.765" FT repeat_region complement(20521093..20521367) FT /rpt_family="ALU" FT /note="82% identity: matches 1..274 of consensus" FT repeat_region 20521236..20521369 FT /rpt_family="L1" FT /note="90% identity: matches 464..597 of consensus" FT repeat_region 20521445..20521482 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 94.7%, counts = 19" FT repeat_region 20521457..20521483 FT /note="TG repeat" FT exon 20522562..20522629 FT /note="MZEF prediction, score = 0.520" FT repeat_region 20522619..20522632 FT /note="TGTAG repeat" FT repeat_region 20522818..20522985 FT /rpt_type=INVERTED FT /note="IR5', 75% complementary to IR5 (89560..89727)" FT repeat_region 20522900..20522958 FT /rpt_family="ALU" FT /note="91% identity: matches 219..277 of consensus" FT repeat_region 20522960..20523015 FT /rpt_family="aata repeat" FT /rpt_type=TANDEM FT /note="homology = 76.8%, counts = 14" FT repeat_region 20522963..20522989 FT /note="AAAT repeat" FT exon 20523096..20523226 FT /note="GRAIL, score = 40%, comment = marginal" FT repeat_region 20523229..20523561 FT /rpt_family="L1" FT /note="81% identity: matches 94..424 of consensus" FT repeat_region 20523591..20523644 FT /rpt_family="L1" FT /note="90% identity: matches 34..88 of consensus" FT repeat_region 20523697..20523803 FT /rpt_family="ALU" FT /note="87% identity: matches 468..575 of consensus" FT repeat_region complement(20523697..20523803) FT /rpt_family="L1" FT /note="88% identity: matches 478..585 of consensus" FT repeat_region 20523893..20523953 FT /rpt_family="ALU" FT /note="90% identity: matches 689..749 of consensus" FT exon complement(20524170..20524281) FT /note="MZEF prediction, score = 0.632" FT repeat_region 20525036..20525165 FT /rpt_family="agaaagaaga repeat" FT /rpt_type=TANDEM FT /note="homology = 63.8%, counts = 13" FT repeat_region 20525213..20525476 FT /rpt_family="ALU" FT /note="84% identity: matches 375..639 of consensus" FT repeat_region complement(20525227..20525477) FT /rpt_family="L1" FT /note="83% identity: matches 177..424 of consensus" FT exon complement(20525350..20525488) FT /note="MZEF prediction, score = 0.909" FT exon complement(20525825..20525846) FT /note="XPOUND prediction, score = 0.938" FT exon complement(20526759..20526871) FT /note="GRAIL, score = 48%, comment = marginal" FT exon complement(20526935..20527053) FT /note="MZEF prediction, score = 0.999" FT exon complement(20526935..20527070) FT /note="GRAIL, score = 66%, comment = good" FT exon complement(20528774..20528857) FT /note="GRAIL, score = 43%, comment = marginal" FT repeat_region complement(20530734..20530839) FT /rpt_family="ALU" FT /note="86% identity: matches 86..192 of consensus" FT repeat_region 20530795..20530916 FT /rpt_family="L1" FT /note="85% identity: matches 463..584 of consensus" FT repeat_region complement(20530796..20530916) FT /rpt_family="ALU" FT /note="87% identity: matches 12..132 of consensus" FT repeat_region complement(20531162..20531433) FT /rpt_family="ALU" FT /note="85% identity: matches 457..727 of consensus" FT repeat_region 20531169..20531419 FT /rpt_family="L1" FT /note="83% identity: matches 178..424 of consensus" FT exon complement(20531544..20531653) FT /note="GRAIL, score = 83%, comment = excellent shadow" FT repeat_region 20531870..20531916 FT /rpt_type=INVERTED FT /note="IR6, 95% complementary to IR6' (100424..100470)" FT repeat_region 20531924..20531970 FT /rpt_type=INVERTED FT /note="IR6', 95% complementary to IR6 (100370..100416)" FT exon complement(20532179..20532197) FT /note="XPOUND prediction, score = 0.335" FT exon complement(20532264..20532276) FT /note="XPOUND prediction, score = 0.340" FT repeat_region 20532317..20532329 FT /note="AT repeat" FT exon 20532550..20532734 FT /note="GRAIL, score = 79%, comment = excellent" FT exon 20532550..20532771 FT /note="GENSCAN prediction, score = 13.03" FT exon 20532967..20533094 FT /note="GRAIL, score = 65%, comment = good" FT repeat_region 20533397..20533420 FT /note="AAAAG repeat" FT repeat_region 20533518..20533672 FT /rpt_family="L1" FT /note="81% identity: matches 267..421 of consensus" FT repeat_region 20533702..20533818 FT /rpt_family="L1" FT /note="85% identity: matches 385..500 of consensus" FT repeat_region complement(20534605..20534878) FT /rpt_family="L1" FT /note="87% identity: matches 250..526 of consensus" FT repeat_region 20534616..20534878 FT /rpt_family="ALU" FT /note="89% identity: matches 5..269 of consensus" FT repeat_region 20534885..20534944 FT /rpt_family="aaaat repeat" FT /rpt_type=TANDEM FT /note="homology = 80.0%, counts = 12" FT repeat_region 20534895..20534918 FT /note="AAAAT repeat" FT exon complement(20535090..20535201) FT /note="XPOUND prediction, score = 0.404" FT exon complement(20535092..20535251) FT /note="MZEF prediction, score = 0.911" FT repeat_region complement(20535129..20535257) FT /rpt_family="MER1" FT /note="88% identity: matches 272..396 of consensus" FT repeat_region complement(20535269..20535381) FT /rpt_family="MER1" FT /note="88% identity: matches 5..119 of consensus" FT exon complement(20535389..20535453) FT /note="GRAIL, score = 47%, comment = marginal shadow" FT exon complement(20535412..20535453) FT /note="XPOUND prediction, score = 0.247" FT exon complement(20535773..20535792) FT /note="XPOUND prediction, score = 0.276" FT exon complement(20535813..20535823) FT /note="XPOUND prediction, score = 0.246" FT repeat_region 20536172..20536205 FT /note="AAAAC repeat" FT repeat_region 20536172..20536206 FT /rpt_family="aaaac repeat" FT /rpt_type=TANDEM FT /note="homology = 97.1%, counts = 7" FT exon 20536554..20536623 FT /note="MZEF prediction, score = 0.634" FT exon complement(20536781..20536844) FT /note="MZEF prediction, score = 0.642" FT exon 20537444..20537555 FT /note="GRAIL, score = 63%, comment = good" FT exon complement(20537457..20537499) FT /note="MZEF prediction, score = 0.675" FT exon 20538310..20538358 FT /note="MZEF prediction, score = 0.654" FT repeat_region 20538356..20538370 FT /note="TAAG repeat" FT exon 20538778..20538851 FT /note="GRAIL, score = 96%, comment = excellent" FT /note="MZEF prediction, score = 0.952" FT repeat_region 20538897..20538910 FT /note="TATAA repeat" FT exon complement(20539008..20539114) FT /note="GRAIL, score = 58%, comment = good shadow" FT repeat_region complement(20539229..20539347) FT /rpt_family="MER37" FT /note="80% identity: matches 167..285 of consensus" FT repeat_region complement(20539350..20539479) FT /rpt_family="THE" FT /note="87% identity: matches 22..151 of consensus" FT repeat_region complement(20539574..20539718) FT /rpt_family="THE" FT /note="84% identity: matches 1..142 of consensus" FT repeat_region complement(20539793..20539868) FT /rpt_family="THR" FT /note="96% identity: matches 842..918 of consensus" FT repeat_region complement(20539897..20540067) FT /rpt_family="THR" FT /note="84% identity: matches 52..223 of consensus" FT repeat_region complement(20540086..20540156) FT /rpt_family="THR" FT /note="90% identity: matches 577..646 of consensus" FT repeat_region complement(20540182..20540234) FT /rpt_family="THR" FT /note="90% identity: matches 671..723 of consensus" FT exon complement(20540189..20540217) FT /note="XPOUND prediction, score = 0.695" FT repeat_region complement(20540252..20540565) FT /rpt_family="THR" FT /note="84% identity: matches 675..988 of consensus" FT exon complement(20540539..20540656) FT /note="XPOUND prediction, score = 0.624" FT repeat_region complement(20540620..20541213) FT /rpt_family="THR" FT /note="82% identity: matches 150..740 of consensus" FT repeat_region complement(20541239..20541342) FT /rpt_family="THR" FT /note="90% identity: matches 19..122 of consensus" FT repeat_region complement(20541379..20541488) FT /rpt_family="THE" FT /note="87% identity: matches 134..243 of consensus" FT exon 20541449..20541640 FT /note="GENSCAN prediction, score = 2.61" FT repeat_region complement(20541610..20541705) FT /rpt_family="THE" FT /note="84% identity: matches 9..105 of consensus" FT exon complement(20541778..20541933) FT /note="GRAIL, score = 46%, comment = marginal shadow" FT exon complement(20541841..20541925) FT /note="XPOUND prediction, score = 0.288" FT repeat_region 20541873..20541909 FT /rpt_family="MER37" FT /note="97% identity: matches 46..82 of consensus" FT exon complement(20542124..20542199) FT /note="XPOUND prediction, score = 0.274" FT repeat_region complement(20542261..20542536) FT /rpt_family="ALU" FT /note="98% identity: matches 13..288 of consensus" FT repeat_region 20542261..20542536 FT /rpt_family="L1" FT /note="88% identity: matches 245..514 of consensus" FT misc_feature 20542265..20542411 FT /note="CpG_island (%GC=68.0, o/e=0.79, #CpGs=15)" FT exon complement(20542271..20542313) FT /note="XPOUND prediction, score = 0.295" FT repeat_region 20542468..20542541 FT /rpt_type=INVERTED FT /note="IR7, 85% complementary to IR7' (112001..112076)" FT repeat_region 20542817..20542866 FT /rpt_family="MER37" FT /note="90% identity: matches 249..298 of consensus" FT repeat_region 20543494..20543576 FT /rpt_family="ALU" FT /note="86% identity: matches 1..83 of consensus" FT repeat_region 20543501..20543576 FT /rpt_type=INVERTED FT /note="IR7', 85% complementary to IR7 (110968..111041)" FT repeat_region complement(20543502..20543543) FT /rpt_family="L1" FT /note="95% identity: matches 547..588 of consensus" FT exon 20543567..20543786 FT /note="XPOUND prediction, score = 0.878" FT exon 20543590..20543828 FT /note="GRAIL, score = 49%, comment = marginal" FT exon 20543622..20543786 FT /note="GENSCAN prediction, score = 22.93" FT repeat_region 20543644..20543655 FT /note="AAG repeat" FT repeat_region 20543679..20543746 FT /note="GAG repeat" FT repeat_region 20543679..20543777 FT /rpt_family="gag repeat" FT /rpt_type=TANDEM FT /note="homology = 75.8%, counts = 33" FT repeat_region 20543761..20543776 FT /note="AGG repeat" FT exon complement(20543960..20543994) FT /note="XPOUND prediction, score = 0.605" FT repeat_region 20544102..20544155 FT /rpt_family="L1" FT /note="88% identity: matches 309..362 of consensus" FT exon complement(20545008..20545054) FT /note="XPOUND prediction, score = 0.390" FT repeat_region 20545045..20545085 FT /rpt_family="ALU" FT /note="95% identity: matches 231..271 of consensus" FT repeat_region 20545122..20545134 FT /note="AGC repeat" FT exon 20545652..20545836 FT /note="MZEF prediction, score = 0.776" FT repeat_region 20545747..20545867 FT /rpt_type=INVERTED FT /note="IR8, 77% complementary to IR8' (115701..115821)" FT repeat_region 20545759..20545828 FT /rpt_family="ALU" FT /note="85% identity: matches 24..93 of consensus" FT repeat_region 20545954..20545984 FT /rpt_family="ALU" FT /note="100% identity: matches 554..584 of consensus" FT repeat_region 20546287..20546305 FT /note="AAAT repeat" FT exon complement(20546401..20546416) FT /note="XPOUND prediction, score = 0.365" FT repeat_region 20546414..20546497 FT /rpt_family="ALU" FT /note="86% identity: matches 490..572 of consensus" FT exon complement(20546719..20546844) FT /note="GENSCAN prediction, score = 4.70" FT exon complement(20546950..20547066) FT /note="GENSCAN prediction, score = 1.34" FT exon complement(20547024..20547051) FT /note="XPOUND prediction, score = 0.211" FT repeat_region 20547201..20547321 FT /rpt_type=INVERTED FT /note="IR8', 77% complementary to IR8 (114247..114367)" FT repeat_region complement(20547228..20547283) FT /rpt_family="ALU" FT /note="92% identity: matches 468..523 of consensus" FT exon complement(20547232..20547234) FT /note="GENSCAN prediction, score = 1.25" FT repeat_region complement(20547264..20547330) FT /rpt_family="ALU" FT /note="88% identity: matches 328..394 of consensus" FT repeat_region 20547371..20547619 FT /rpt_family="ALU" FT /note="86% identity: matches 10..255 of consensus" FT repeat_region complement(20547372..20547484) FT /rpt_family="L1" FT /note="85% identity: matches 473..585 of consensus" FT repeat_region complement(20547518..20547619) FT /rpt_family="L1" FT /note="88% identity: matches 184..285 of consensus" FT exon complement(20547671..20547782) FT /note="MZEF prediction, score = 0.612" FT repeat_region 20547676..20547766 FT /rpt_family="ALU" FT /note="84% identity: matches 9..99 of consensus" FT exon complement(20548318..20548424) FT /note="GRAIL, score = 91%, comment = excellent" FT exon complement(20548327..20548349) FT /note="XPOUND prediction, score = 0.203" FT exon complement(20548365..20548424) FT /note="XPOUND prediction, score = 0.257" FT exon complement(20548736..20548976) FT /note="MZEF prediction, score = 0.932" FT repeat_region 20548971..20549024 FT /rpt_family="L1" FT /note="88% identity: matches 300..353 of consensus" FT repeat_region complement(20548972..20549101) FT /rpt_family="ALU" FT /note="85% identity: matches 469..597 of consensus" FT repeat_region 20549381..20549392 FT /note="AAC repeat" FT exon complement(20549464..20549555) FT /note="GRAIL, score = 59%, comment = good" FT exon complement(20549810..20549880) FT /note="MZEF prediction, score = 0.948" FT exon complement(20549944..20550001) FT /note="XPOUND prediction, score = 0.229" FT repeat_region 20550419..20550431 FT /note="TG repeat" FT repeat_region complement(20550462..20550505) FT /rpt_family="ALU" FT /note="93% identity: matches 405..448 of consensus" FT repeat_region 20550572..20550583 FT /note="CAC repeat" FT repeat_region complement(20550665..20550694) FT /rpt_family="ALU" FT /note="100% identity: matches 421..450 of consensus" FT repeat_region 20550746..20550765 FT /note="TTAT repeat" FT repeat_region complement(20550775..20550899) FT /rpt_family="ALU" FT /note="88% identity: matches 427..551 of consensus" FT repeat_region 20550971..20551042 FT /rpt_family="L1" FT /note="91% identity: matches 843..915 of consensus" FT repeat_region complement(20550989..20551051) FT /rpt_family="ALU" FT /note="89% identity: matches 916..979 of consensus" FT repeat_region 20552508..20552537 FT /rpt_family="ttg repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 10" FT repeat_region 20552522..20552537 FT /note="GTT repeat" FT exon complement(20552523..20552534) FT /note="XPOUND prediction, score = 0.204" FT repeat_region 20553193..20553206 FT /note="AAAAC repeat" FT repeat_region 20553748..20553776 FT /rpt_type=INVERTED FT /note="IR9, 89% complementary to IR9' (122897..122925)" FT repeat_region 20554397..20554425 FT /rpt_type=INVERTED FT /note="IR9', 89% complementary to IR9 (122248..122276)" FT exon complement(20554642..20554816) FT /note="MZEF prediction, score = 0.982" FT exon 20555030..20555276 FT /note="MZEF prediction, score = 0.873" FT repeat_region 20555330..20555382 FT /rpt_type=INVERTED FT /note="IR10, 83% complementary to IR10' (124972..125024)" FT repeat_region 20555787..20555800 FT /note="AAAT repeat" FT exon 20556383..20556468 FT /note="MZEF prediction, score = 0.854" FT repeat_region complement(20556402..20556681) FT /rpt_family="L1" FT /note="82% identity: matches 245..526 of consensus" FT repeat_region 20556413..20556658 FT /rpt_family="ALU" FT /note="86% identity: matches 10..255 of consensus" FT repeat_region 20556472..20556524 FT /rpt_type=INVERTED FT /note="IR10', 83% complementary to IR10 (123830..123882)" FT repeat_region 20556637..20556681 FT /rpt_family="L1" FT /note="93% identity: matches 607..651 of consensus" FT repeat_region 20556683..20556705 FT /note="AAAT repeat" FT exon complement(20556979..20556992) FT /note="XPOUND prediction, score = 0.232" FT exon complement(20557031..20557074) FT /note="XPOUND prediction, score = 0.431" FT exon complement(20557210..20557220) FT /note="XPOUND prediction, score = 0.201" FT exon 20558135..20558251 FT /note="GRAIL, score = 41%, comment = marginal shadow" FT repeat_region complement(20558322..20558377) FT /rpt_family="ALU" FT /note="89% identity: matches 55..110 of consensus" FT repeat_region 20558373..20558390 FT /note="CTGC repeat" FT repeat_region complement(20558381..20558436) FT /rpt_family="ALU" FT /note="91% identity: matches 4..59 of consensus" FT repeat_region 20558388..20558425 FT /rpt_family="L1" FT /note="94% identity: matches 387..424 of consensus" FT exon complement(20558959..20559069) FT /note="GENSCAN prediction, score = 5.48" FT exon complement(20558963..20559069) FT /note="GRAIL, score = 100%, comment = excellent" FT exon complement(20558998..20559069) FT /note="XPOUND prediction, score = 0.372" FT exon 20560229..20560282 FT /note="MZEF prediction, score = 0.504" FT repeat_region 20561078..20561091 FT /note="TG repeat" FT repeat_region 20563716..20563728 FT /note="ACAG repeat" FT repeat_region 20563925..20563938 FT /note="AAAT repeat" FT exon complement(20565272..20565311) FT /note="XPOUND prediction, score = 0.334" FT exon complement(20565642..20565647) FT /note="XPOUND prediction, score = 0.226" FT repeat_region 20565909..20566094 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 89.2%, counts = 93" FT repeat_region 20565909..20566095 FT /note="AT repeat" FT repeat_region 20565910..20566001 FT /rpt_type=INVERTED FT /note="IR11, 80% complementary to IR11' (134504..134595)" FT repeat_region 20566004..20566095 FT /rpt_type=INVERTED FT /note="IR11', 80% complementary to IR11 (134410..134501)" FT repeat_region 20566166..20566274 FT /rpt_family="ALU" FT /note="91% identity: matches 11..117 of consensus" FT repeat_region complement(20566170..20566274) FT /rpt_family="L1" FT /note="88% identity: matches 324..424 of consensus" FT repeat_region 20566906..20566918 FT /note="AAT repeat" FT exon complement(20567934..20567939) FT /note="GENSCAN prediction, score = 2.73" FT exon complement(20567934..20568003) FT /note="MZEF prediction, score = 0.993" FT exon complement(20569804..20570014) FT /note="GRAIL, score = 53%, comment = good" FT exon complement(20569851..20569874) FT /note="XPOUND prediction, score = 0.208" FT exon complement(20569881..20569895) FT /note="XPOUND prediction, score = 0.214" FT STS 20570307..20570545 FT /standard_name="SHGC-83267 (D11S4975), Map: 9, Homo FT sapiens" FT /note="GenBank Accession Number: G49968" FT repeat_region 20571301..20571314 FT /note="CA repeat" FT repeat_region complement(20571456..20571685) FT /rpt_family="L1" FT /note="91% identity: matches 1220..1449 of consensus" FT exon complement(20571709..20571719) FT /note="XPOUND prediction, score = 0.239" FT repeat_region 20571880..20572037 FT /rpt_family="L1" FT /note="83% identity: matches 518..675 of consensus" FT exon complement(20572322..20572338) FT /note="XPOUND prediction, score = 0.234" FT exon 20572512..20572611 FT /note="MZEF prediction, score = 0.503" FT repeat_region 20572520..20572798 FT /rpt_family="ALU" FT /note="84% identity: matches 10..286 of consensus" FT repeat_region complement(20572525..20572798) FT /rpt_family="L1" FT /note="82% identity: matches 155..424 of consensus" FT repeat_region 20573123..20573202 FT /rpt_family="tttttttttg repeat" FT /rpt_type=TANDEM FT /note="homology = 77.5%, counts = 8" FT repeat_region 20573178..20573191 FT /note="TTTTG repeat" FT repeat_region complement(20573370..20573467) FT /rpt_family="ALU" FT /note="87% identity: matches 11..108 of consensus" FT repeat_region 20573418..20573458 FT /rpt_family="L1" FT /note="100% identity: matches 378..418 of consensus" FT repeat_region 20574567..20574637 FT /rpt_type=INVERTED FT /note="IR12, 95% complementary to IR12' (143866..143936)" FT repeat_region 20574655..20574713 FT /rpt_family="MER37" FT /note="88% identity: matches 66..124 of consensus" FT repeat_region complement(20574938..20575067) FT /rpt_family="MER37" FT /note="82% identity: matches 79..207 of consensus" FT repeat_region 20575016..20575071 FT /rpt_family="MER37" FT /note="89% identity: matches 29..84 of consensus" FT exon complement(20575036..20575164) FT /note="GRAIL, score = 41%, comment = marginal" FT exon complement(20575124..20575169) FT /note="XPOUND prediction, score = 0.348" FT repeat_region 20575126..20575263 FT /rpt_family="MER37" FT /note="80% identity: matches 47..184 of consensus" FT repeat_region 20575366..20575436 FT /rpt_type=INVERTED FT /note="IR12', 95% complementary to IR12 (143067..143137)" FT repeat_region complement(20575760..20575890) FT /rpt_family="MER37" FT /note="83% identity: matches 5..134 of consensus" FT repeat_region 20575871..20576023 FT /rpt_family="MER37" FT /note="82% identity: matches 147..298 of consensus" FT exon complement(20575932..20576140) FT /note="GRAIL, score = 54%, comment = good" FT exon complement(20575963..20576100) FT /note="XPOUND prediction, score = 0.623" FT exon complement(20576184..20576294) FT /note="GRAIL, score = 46%, comment = marginal" FT repeat_region complement(20576282..20576371) FT /rpt_family="MER37" FT /note="85% identity: matches 106..196 of consensus" FT repeat_region 20576339..20576383 FT /rpt_family="MER37" FT /note="93% identity: matches 426..470 of consensus" FT repeat_region 20576616..20576688 FT /rpt_family="MER37" FT /note="87% identity: matches 108..180 of consensus" FT repeat_region 20576865..20576919 FT /rpt_family="ALU" FT /note="89% identity: matches 145..199 of consensus" FT repeat_region 20578404..20578493 FT /rpt_family="ALU" FT /note="84% identity: matches 10..99 of consensus" FT repeat_region 20578875..20578935 FT /rpt_family="MER33" FT /note="88% identity: matches 164..224 of consensus" FT repeat_region 20579142..20579183 FT /rpt_family="ALU" FT /note="92% identity: matches 58..99 of consensus" FT exon complement(20579293..20579344) FT /note="XPOUND prediction, score = 0.249" FT exon 20581172..20581231 FT /note="MZEF prediction, score = 0.623" FT exon complement(20581612..20581669) FT /note="XPOUND prediction, score = 0.244" FT repeat_region 20581827..20581840 FT /note="CAA repeat" FT repeat_region complement(20582591..20582890) FT /rpt_family="THE" FT /note="84% identity: matches 5..308 of consensus" FT exon 20582651..20582761 FT /note="GENSCAN prediction, score = 2.16" FT repeat_region complement(20582914..20583149) FT /rpt_family="THR" FT /note="88% identity: matches 908..1143 of consensus" FT repeat_region complement(20583175..20583305) FT /rpt_family="THR" FT /note="85% identity: matches 1130..1261 of consensus" FT repeat_region complement(20583256..20584414) FT /rpt_family="THR" FT /note="83% identity: matches 27..1194 of consensus" FT exon 20583626..20583862 FT /note="GENSCAN prediction, score = 8.08" FT /note="GRAIL, score = 62%, comment = good" FT exon 20583712..20583721 FT /note="XPOUND prediction, score = 0.203" FT exon complement(20584322..20584441) FT /note="MZEF prediction, score = 0.756" FT repeat_region complement(20584399..20584442) FT /rpt_family="THR" FT /note="93% identity: matches 1..44 of consensus" FT repeat_region complement(20584444..20584481) FT /rpt_family="THE" FT /note="94% identity: matches 227..264 of consensus" FT repeat_region complement(20584502..20584798) FT /rpt_family="THE" FT /note="89% identity: matches 7..304 of consensus" FT repeat_region complement(20584899..20585010) FT /rpt_family="L1" FT /note="83% identity: matches 6..117 of consensus" FT exon complement(20584906..20584919) FT /note="XPOUND prediction, score = 0.235" FT repeat_region complement(20585112..20585151) FT /rpt_family="THE" FT /note="95% identity: matches 9..48 of consensus" FT exon complement(20585657..20585789) FT /note="GRAIL, score = 97%, comment = excellent" FT exon complement(20586055..20586148) FT /note="GRAIL, score = 74%, comment = good" FT /note="MZEF prediction, score = 0.615" FT repeat_region 20586057..20586124 FT /rpt_family="ALU" FT /note="86% identity: matches 23..90 of consensus" FT repeat_region 20586167..20586211 FT /rpt_family="ALU" FT /note="95% identity: matches 432..476 of consensus" FT repeat_region 20586248..20586311 FT /rpt_family="ALU" FT /note="87% identity: matches 243..306 of consensus" FT exon 20587369..20587523 FT /note="GRAIL, score = 70%, comment = good shadow" FT exon complement(20587585..20587881) FT /note="GRAIL, score = 42%, comment = marginal" FT exon complement(20587585..20588775) FT /note="GENSCAN prediction, score = 29.64" FT repeat_region complement(20587616..20588817) FT /rpt_family="L1" FT /note="96% identity: matches 167..1368 of consensus" FT exon 20587899..20587933 FT /note="GRAIL, score = 63%, comment = good shadow" FT /note="MZEF prediction, score = 0.726" FT exon complement(20588425..20588576) FT /note="MZEF prediction, score = 0.786" FT repeat_region 20588819..20589430 FT /rpt_family="L1" FT /note="97% identity: matches 1367..1979 of consensus" FT repeat_region 20589452..20589586 FT /rpt_family="L1" FT /note="97% identity: matches 212..346 of consensus" FT repeat_region 20589573..20589597 FT /rpt_type=INVERTED FT /note="IR13, 88% complementary to IR13' (159408..159432)" FT repeat_region 20589732..20589985 FT /rpt_family="L1" FT /note="87% identity: matches 165..416 of consensus" FT repeat_region complement(20589733..20589985) FT /rpt_family="ALU" FT /note="90% identity: matches 22..273 of consensus" FT repeat_region 20590514..20590559 FT /rpt_family="tc repeat" FT /rpt_type=TANDEM FT /note="homology = 76.1%, counts = 23" FT repeat_region 20590528..20590540 FT /note="TGTC repeat" FT repeat_region 20590595..20590712 FT /rpt_family="THE" FT /note="91% identity: matches 131..248 of consensus" FT repeat_region complement(20590808..20590871) FT /rpt_family="ALU" FT /note="90% identity: matches 950..1013 of consensus" FT repeat_region 20590817..20590863 FT /rpt_type=INVERTED FT /note="IR14, 87% complementary to IR14' (160413..160459)" FT repeat_region 20590908..20590932 FT /rpt_type=INVERTED FT /note="IR13', 88% complementary to IR13 (158073..158097)" FT repeat_region complement(20590961..20591022) FT /rpt_family="ALU" FT /note="88% identity: matches 647..708 of consensus" FT repeat_region 20591913..20591953 FT /rpt_family="ALU" FT /note="95% identity: matches 958..998 of consensus" FT repeat_region 20591913..20591959 FT /rpt_type=INVERTED FT /note="IR14', 87% complementary to IR14 (159317..159363)" FT repeat_region 20593941..20594228 FT /rpt_type=INVERTED FT /note="IR15, 76% complementary to IR15' (163585..163886)" FT repeat_region 20593957..20594218 FT /rpt_family="L1" FT /note="85% identity: matches 160..417 of consensus" FT repeat_region complement(20593957..20594236) FT /rpt_family="ALU" FT /note="87% identity: matches 4..283 of consensus" FT exon 20593963..20594217 FT /note="MZEF prediction, score = 0.670" FT repeat_region 20595078..20595123 FT /rpt_family="ALU" FT /note="91% identity: matches 5..50 of consensus" FT repeat_region 20595085..20595386 FT /rpt_type=INVERTED FT /note="IR15', 76% complementary to IR15 (162441..162728)" FT repeat_region 20595217..20595269 FT /rpt_family="ALU" FT /note="90% identity: matches 1010..1062 of consensus" FT repeat_region 20595327..20595361 FT /rpt_family="ALU" FT /note="97% identity: matches 223..257 of consensus" FT repeat_region 20595377..20595393 FT /note="AATAA repeat" FT exon 20596383..20596507 FT /note="MZEF prediction, score = 0.783" FT repeat_region 20596417..20596665 FT /rpt_family="ALU" FT /note="87% identity: matches 15..262 of consensus" FT repeat_region complement(20596424..20596667) FT /rpt_family="L1" FT /note="83% identity: matches 182..421 of consensus" FT repeat_region 20596697..20596711 FT /note="AAAT repeat" FT repeat_region complement(20597020..20597074) FT /rpt_family="L1" FT /note="94% identity: matches 191..245 of consensus" FT repeat_region 20599028..20599302 FT /rpt_family="ALU" FT /note="89% identity: matches 153..426 of consensus" FT repeat_region complement(20599037..20599288) FT /rpt_family="L1" FT /note="86% identity: matches 175..424 of consensus" FT exon 20599158..20599287 FT /note="MZEF prediction, score = 0.558" FT exon complement(20600330..20600357) FT /note="XPOUND prediction, score = 0.239" FT repeat_region 20601798..20601824 FT /rpt_type=INVERTED FT /note="IR16, 92% complementary to IR16' (171317..171342)" FT exon complement(20601907..20601950) FT /note="XPOUND prediction, score = 0.318" FT repeat_region 20602759..20602796 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 97.4%, counts = 19" FT repeat_region 20602761..20602797 FT /note="AC repeat" FT repeat_region 20602817..20602842 FT /rpt_type=INVERTED FT /note="IR16', 92% complementary to IR16 (170298..170324)" FT repeat_region 20603968..20603998 FT /rpt_type=INVERTED FT /note="IR17, 86% complementary to IR17' (173125..173154)" FT repeat_region 20604625..20604654 FT /rpt_type=INVERTED FT /note="IR17', 86% complementary to IR17 (172468..172498)" FT exon complement(20607157..20607206) FT /note="GRAIL, score = 54%, comment = good" FT misc_feature 20607432..20610032 FT /note="annotated region of clone" FT misc_feature 20610033..20690302 FT /note="annotated region of clone" FT mRNA complement(join(AL513498.2:30697..31597, FT AL513498.2:33661..33736,AL513498.2:81713..82417, FT 20620653..20620833,20622244..20622439)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-008" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /note="match: cDNAs: Em:BC030550.1" FT mRNA complement(join(AL512635.8:159162..164071, FT AL512635.8:171022..171093,AL512635.8:172305..172376, FT AL512635.8:178239..178338,AL513498.2:31468..31597, FT AL513498.2:33661..33736,AL513498.2:81713..82417, FT AL513498.2:116115..116258,AL513498.2:124696..124778, FT 20620653..20620833,20622244..20622542)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-001" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /note="match: cDNAs: Em:BC036089.1 Em:D16688.1 Em:L13744.1" FT /note="match: ESTs: Em:AA406302.1 Em:AA442076.1 FT Em:AA443284.1 Em:AI336478.1 Em:AI554049.1 Em:AI620408.1 FT Em:AI739108.1 Em:AI768397.1 Em:AL535503.1 Em:AL565947.1 FT Em:AW044186.1 Em:AW163788.1 Em:AW302520.1 Em:AW451255.1 FT Em:AW572468.1 Em:BF104863.1 Em:BF510928.1 Em:BG940265.1 FT Em:BG958583.1 Em:BI550359.1 Em:BI561777.1 Em:BI710808.1 FT Em:BM018568.1 Em:BU623899.1 Em:CA418678.1 Em:H18503.1 FT Em:H99306.1 Em:N56884.1" FT CDS complement(join(AL512635.8:163940..164071, FT AL512635.8:171022..171093,AL512635.8:172305..172376, FT AL512635.8:178239..178338,AL513498.2:31468..31597, FT AL513498.2:33661..33736,AL513498.2:81713..82417, FT AL513498.2:116115..116258,AL513498.2:124696..124778, FT 20620653..20620833,20622244..20622255)) FT /gene="MLLT3" FT /locus_tag="RP11-15P13.2-001" FT /standard_name="OTTHUMP00000021127" FT /product="myeloid/lymphoid or mixed-lineage leukemia FT (trithorax homolog, Drosophila); translocated to, 3" FT /note="match: proteins: Sw:P42568 Sw:Q03111 Tr:Q6LEQ8 FT Tr:Q8VDR6 Tr:Q99MK4" FT /protein_id="CAI14771.1" FT /translation="MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQ FT HFVEKVVFHLHESFPRPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDL FT FLHLEGHPPVNHLRCEKLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSS FT SSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPS FT RDHNKSSKESSKKPKENKPLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAP FT SKRPPISDSEELSAKKRKKSSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKI FT ESETSEKKKSTLPPFDDIVDPNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQ FT QGPLRSIMKDLHSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSA FT SSPLHHEPPPPLLKTNNNQILEVKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTL FT RERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS" FT mRNA join(20658308..20658458,20658690..20658825, FT complement(AL445624.3:173266..173310), FT complement(AL445624.3:152420..152508), FT complement(AL445624.3:149962..150036), FT complement(AL445624.3:147296..147450), FT complement(AL445624.3:127490..127594), FT complement(AL445624.3:109639..109740), FT complement(AL445624.3:102757..102961), FT complement(AL445624.3:97592..97798), FT complement(AL445624.3:89062..89149), FT complement(AL445624.3:85901..86103), FT complement(AL445624.3:78222..78479), FT complement(AL445624.3:47930..48034), FT complement(AL445624.3:47405..47506), FT complement(AL445624.3:46759..46889), FT complement(AL445624.3:44715..44841), FT complement(AL445624.3:5118..5252), FT complement(AL445624.3:1854..1904), FT complement(AL445624.3:818..901),AL392163.8:80200..80326, FT AL392163.8:87390..87575,AL392163.8:90628..90749, FT AL392163.8:112669..112761,AL392163.8:118385..118473, FT AL392163.8:122412..122456, FT complement(AL662879.5:152631..152739), FT complement(AL662879.5:149982..150098), FT complement(AL662879.5:146803..147041), FT complement(AL662879.5:143296..143385), FT complement(AL662879.5:131625..131772), FT complement(AL662879.5:129579..129698), FT complement(AL662879.5:128006..128128), FT complement(AL662879.5:127471..127548), FT complement(AL662879.5:126724..126795), FT complement(AL662879.5:125301..125403), FT complement(AL662879.5:123334..123414), FT complement(AL662879.5:99851..99979), FT complement(AL662879.5:97945..98060), FT complement(AL662879.5:94713..94973), FT complement(AL662879.5:93953..94042), FT complement(AL662879.5:89934..90111), FT complement(AL662879.5:87970..88067), FT complement(AL662879.5:86025..86276), FT complement(AL662879.5:83071..83146), FT complement(AL662879.5:80444..80843)) FT /gene="KIAA1797" FT /locus_tag="RP11-279F22.1-001" FT /product="KIAA1797" FT /note="match: cDNAs: Em:AB058700.1 Em:AK000382.1 FT Em:AK055116.1 Em:AK056522.1 Em:AK172818.1 Em:AL512738.1 FT Em:AY139834.1 Em:BC001246.1 Em:CR607345.1 Em:CR608016.1" FT /note="match: ESTs: Em:AA443883.1 Em:AA969025.1 FT Em:AI081999.1 Em:AI130992.1 Em:AI201522.1 Em:AI376928.1 FT Em:AL539295.3 Em:AL542355.3 Em:AL567771.3 Em:AL711955.1 FT Em:AW087242.1 Em:AW316588.1 Em:AW837578.1 Em:AW837582.1 FT Em:AW954262.1 Em:BE164598.1 Em:BE378895.1 Em:BE885081.1 FT Em:BE910349.1 Em:BF206698.1 Em:BF445512.1 Em:BF446957.1 FT Em:BF591328.1 Em:BF886728.1 Em:BF959554.1 Em:BF962861.1 FT Em:BF963479.1 Em:BG474026.1 Em:BG479275.1 Em:BG750216.1 FT Em:BG777441.1 Em:BI035291.1 Em:BI051589.1 Em:BI084055.1 FT Em:BI256961.1 Em:BM272641.1 Em:BM977948.1 Em:BQ009318.1 FT Em:BQ057330.1 Em:BQ071018.1 Em:BQ428170.1 Em:BQ573802.1 FT Em:BQ573850.1 Em:BQ776091.1 Em:BU541332.1 Em:BU678536.1 FT Em:BU738727.1 Em:BX283250.1 Em:BX283774.1 Em:CA424291.1 FT Em:CB850635.1 Em:CF995832.1 Em:CK000130.1 Em:CN365675.1 FT Em:CN365676.1 Em:CN365677.1 Em:CN365681.1 Em:CN365682.1 FT Em:CN365685.1 Em:CN365686.1 Em:CN365687.1" FT mRNA complement(join(20683388..20683540,20683874..20683937)) FT /locus_tag="RP11-4E23.2-002" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AW363020.1" FT mRNA complement(join(20683303..20683540,20684567..20684687)) FT /locus_tag="RP11-4E23.2-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AI288976.1" FT misc_feature 20686303 FT /note="Clone_left_end: RP11-512L9" FT misc_feature complement(20688303..20867828) FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT repeat_region 20867508..20867568 FT /rpt_family="L1" FT /note="100% identity: matches 959..1019 of consensus" FT exon 20866928..20867011 FT /note="GENSCAN prediction, score = 5.10" FT /note="MZEF prediction, score = 0.995" FT exon 20866957..20866982 FT /note="XPOUND prediction, score = 0.207" FT repeat_region complement(20866853..20866916) FT /rpt_family="aaaaaaca repeat" FT /rpt_type=TANDEM FT /note="homology = 79.7%, counts = 8" FT exon 20865553..20865612 FT /note="XPOUND prediction, score = 0.356" FT exon 20865099..20865108 FT /note="XPOUND prediction, score = 0.221" FT exon 20863420..20863549 FT /note="MZEF prediction, score = 0.731" FT repeat_region complement(20862798..20862819) FT /note="AAC repeat" FT exon 20862577..20862711 FT /note="GENSCAN prediction, score = 3.34" FT exon complement(20862224..20862318) FT /note="MZEF prediction, score = 0.906" FT repeat_region complement(20860687..20860814) FT /rpt_type=INVERTED FT /note="IR1, 84% complementary to IR1' (8615..8742)" FT repeat_region 20860658..20860809 FT /rpt_family="L1" FT /note="88% identity: matches 375..526 of consensus" FT repeat_region complement(20860549..20860804) FT /rpt_family="ALU" FT /note="96% identity: matches 1..254 of consensus" FT repeat_region 20860554..20860636 FT /rpt_family="L1" FT /note="84% identity: matches 167..249 of consensus" FT repeat_region complement(20860507..20860548) FT /rpt_family="caaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 81.0%, counts = 7" FT repeat_region complement(20860517..20860534) FT /note="AAAAC repeat" FT repeat_region complement(20860291..20860408) FT /rpt_family="THE" FT /note="93% identity: matches 42..159 of consensus" FT exon 20859763..20859778 FT /note="XPOUND prediction, score = 0.316" FT exon 20859733..20859778 FT /note="MZEF prediction, score = 0.966" FT repeat_region complement(20859694..20859727) FT /note="TA repeat" FT repeat_region complement(20859672..20859682) FT /note="TA repeat" FT repeat_region complement(20859392..20859406) FT /note="TTTC repeat" FT repeat_region 20859243..20859341 FT /rpt_family="ALU" FT /note="95% identity: matches 1241..1339 of consensus" FT repeat_region complement(20859231..20859337) FT /rpt_family="L1" FT /note="85% identity: matches 693..802 of consensus" FT repeat_region complement(20859106..20859214) FT /rpt_family="L1" FT /note="87% identity: matches 320..424 of consensus" FT repeat_region 20859094..20859214 FT /rpt_family="ALU" FT /note="87% identity: matches 137..257 of consensus" FT repeat_region complement(20859087..20859214) FT /rpt_type=INVERTED FT /note="IR1', 84% complementary to IR1 (7015..7142)" FT exon 20859126..20859160 FT /note="XPOUND prediction, score = 0.597" FT repeat_region complement(20858747..20858961) FT /rpt_family="L1" FT /note="82% identity: matches 669..885 of consensus" FT repeat_region complement(20858615..20858653) FT /rpt_family="L1" FT /note="97% identity: matches 59..97 of consensus" FT repeat_region complement(20858065..20858297) FT /rpt_family="L1" FT /note="82% identity: matches 394..627 of consensus" FT repeat_region complement(20857890..20857951) FT /rpt_family="L1" FT /note="90% identity: matches 991..1052 of consensus" FT repeat_region complement(20857806..20857876) FT /rpt_family="L1" FT /note="87% identity: matches 816..886 of consensus" FT repeat_region complement(20857753..20857832) FT /rpt_family="aaaaataactcaataaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 75.0%, counts = 4" FT repeat_region complement(20857686..20857762) FT /rpt_family="L1" FT /note="88% identity: matches 918..994 of consensus" FT repeat_region complement(20857317..20857395) FT /rpt_family="L1" FT /note="88% identity: matches 1112..1190 of consensus" FT repeat_region complement(20856920..20857321) FT /rpt_family="L1" FT /note="82% identity: matches 364..759 of consensus" FT repeat_region complement(20856379..20857009) FT /rpt_family="L1" FT /note="84% identity: matches 1657..2284 of consensus" FT repeat_region complement(20856113..20856344) FT /rpt_family="L1" FT /note="82% identity: matches 2329..2561 of consensus" FT repeat_region complement(20855857..20856101) FT /rpt_family="L1" FT /note="86% identity: matches 1793..2036 of consensus" FT repeat_region complement(20855477..20855672) FT /rpt_family="L1" FT /note="83% identity: matches 541..739 of consensus" FT repeat_region complement(20854815..20854831) FT /note="AATC repeat" FT exon complement(20853302..20853355) FT /note="MZEF prediction, score = 0.644" FT repeat_region complement(20852809..20852948) FT /rpt_family="aataa repeat" FT /rpt_type=TANDEM FT /note="homology = 59.3%, counts = 28" FT exon complement(20850963..20851028) FT /note="MZEF prediction, score = 0.970" FT repeat_region complement(20848861..20848879) FT /note="AAT repeat" FT repeat_region complement(20847308..20847390) FT /rpt_family="L1" FT /note="89% identity: matches 30..111 of consensus" FT repeat_region complement(20845442..20845465) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 12" FT repeat_region complement(20845442..20845465) FT /note="AT repeat" FT STS complement(20844701..20844905) FT /standard_name="SHGC-14450 (D7S467), Map: 9, Homo sapiens" FT /note="GenBank Accession Number: G17390" FT exon 20844697..20844727 FT /note="XPOUND prediction, score = 0.242" FT repeat_region 20844384..20844645 FT /rpt_family="L1" FT /note="85% identity: matches 167..424 of consensus" FT repeat_region complement(20844376..20844642) FT /rpt_family="ALU" FT /note="89% identity: matches 21..290 of consensus" FT repeat_region complement(20843490..20843674) FT /rpt_family="L1" FT /note="85% identity: matches 79..263 of consensus" FT repeat_region complement(20843400..20843458) FT /rpt_family="L1" FT /note="93% identity: matches 160..218 of consensus" FT repeat_region complement(20843267..20843364) FT /rpt_family="L1" FT /note="83% identity: matches 253..353 of consensus" FT repeat_region complement(20842680..20842781) FT /rpt_family="L1" FT /note="84% identity: matches 1..102 of consensus" FT repeat_region complement(20842538..20842639) FT /rpt_family="L1" FT /note="85% identity: matches 69..171 of consensus" FT repeat_region complement(20842293..20842415) FT /rpt_family="L1" FT /note="83% identity: matches 387..513 of consensus" FT exon 20842202..20842243 FT /note="MZEF prediction, score = 0.598" FT repeat_region complement(20842026..20842115) FT /rpt_family="L1" FT /note="91% identity: matches 10..99 of consensus" FT repeat_region complement(20841705..20841860) FT /rpt_family="aaaaaagaaaat repeat" FT /rpt_type=TANDEM FT /note="homology = 62.2%, counts = 13" FT repeat_region complement(20841534..20841632) FT /rpt_family="L1" FT /note="83% identity: matches 230..327 of consensus" FT repeat_region complement(20841217..20841323) FT /rpt_family="L1" FT /note="85% identity: matches 11..116 of consensus" FT repeat_region complement(20841083..20841179) FT /rpt_family="L1" FT /note="87% identity: matches 467..564 of consensus" FT repeat_region complement(20840959..20841076) FT /rpt_family="L1" FT /note="81% identity: matches 748..865 of consensus" FT repeat_region complement(20840699..20840787) FT /rpt_family="L1" FT /note="87% identity: matches 37..129 of consensus" FT repeat_region complement(20840384..20840558) FT /rpt_family="aataa repeat" FT /rpt_type=TANDEM FT /note="homology = 62.3%, counts = 35" FT repeat_region complement(20840498..20840511) FT /note="AATAA repeat" FT repeat_region complement(20840431..20840457) FT /note="ATAAA repeat" FT repeat_region complement(20840253..20840304) FT /rpt_family="L1" FT /note="94% identity: matches 19..70 of consensus" FT repeat_region complement(20839994..20840223) FT /rpt_family="L1" FT /note="87% identity: matches 527..757 of consensus" FT repeat_region complement(20839820..20840084) FT /rpt_family="L1" FT /note="83% identity: matches 1653..1915 of consensus" FT repeat_region complement(20839709..20839798) FT /rpt_family="L1" FT /note="90% identity: matches 116..204 of consensus" FT exon 20839750..20839759 FT /note="XPOUND prediction, score = 0.531" FT repeat_region 20839421..20839564 FT /rpt_family="L1" FT /note="83% identity: matches 457..601 of consensus" FT repeat_region complement(20839292..20839550) FT /rpt_family="ALU" FT /note="82% identity: matches 10..268 of consensus" FT repeat_region 20839292..20839401 FT /rpt_family="L1" FT /note="83% identity: matches 177..286 of consensus" FT repeat_region complement(20839247..20839261) FT /note="AAAG repeat" FT repeat_region complement(20839115..20839160) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 78.3%, counts = 23" FT repeat_region complement(20839131..20839144) FT /note="AC repeat" FT exon 20837960..20838005 FT /note="MZEF prediction, score = 0.749" FT exon complement(20836678..20836703) FT /note="MZEF prediction, score = 0.529" FT repeat_region complement(20834457..20834470) FT /note="TTTTC repeat" FT repeat_region 20834143..20834448 FT /rpt_family="L1" FT /note="83% identity: matches 415..728 of consensus" FT exon 20834051..20834221 FT /note="XPOUND prediction, score = 0.607" FT repeat_region complement(20833176..20833256) FT /rpt_family="L1" FT /note="86% identity: matches 51..131 of consensus" FT repeat_region complement(20833013..20833145) FT /rpt_family="L1" FT /note="82% identity: matches 536..668 of consensus" FT repeat_region complement(20832847..20832921) FT /rpt_family="L1" FT /note="88% identity: matches 580..654 of consensus" FT repeat_region complement(20832711..20832844) FT /rpt_family="L1" FT /note="83% identity: matches 1046..1181 of consensus" FT repeat_region complement(20832451..20832625) FT /rpt_family="L1" FT /note="86% identity: matches 2988..3162 of consensus" FT exon 20831282..20831380 FT /note="MZEF prediction, score = 0.766" FT repeat_region complement(20830796..20830829) FT /rpt_family="ALU" FT /note="97% identity: matches 146..179 of consensus" FT exon 20829957..20829978 FT /note="MZEF prediction, score = 0.533" FT repeat_region complement(20829352..20829392) FT /rpt_family="L1" FT /note="95% identity: matches 2318..2358 of consensus" FT repeat_region complement(20828655..20829371) FT /rpt_family="L1" FT /note="85% identity: matches 1..714 of consensus" FT repeat_region complement(20828973..20829006) FT /rpt_type=INVERTED FT /note="IR2, 82% complementary to IR2' (40265..40298)" FT repeat_region complement(20828360..20828418) FT /rpt_family="L1" FT /note="91% identity: matches 871..929 of consensus" FT repeat_region 20828085..20828153 FT /rpt_family="ALU" FT /note="92% identity: matches 1008..1076 of consensus" FT exon 20828095..20828110 FT /note="XPOUND prediction, score = 0.369" FT repeat_region 20828017..20828079 FT /rpt_family="ALU" FT /note="92% identity: matches 277..340 of consensus" FT repeat_region 20827890..20827950 FT /rpt_family="ALU" FT /note="91% identity: matches 1..61 of consensus" FT repeat_region complement(20827890..20827950) FT /rpt_family="THR" FT /note="88% identity: matches 40..100 of consensus" FT repeat_region 20827606..20827683 FT /rpt_family="L1" FT /note="85% identity: matches 1145..1221 of consensus" FT repeat_region complement(20827531..20827564) FT /rpt_type=INVERTED FT /note="IR2', 82% complementary to IR2 (38823..38856)" FT repeat_region complement(20827516..20827532) FT /note="ATAC repeat" FT repeat_region complement(20827493..20827532) FT /rpt_family="acac repeat" FT /rpt_type=TANDEM FT /note="homology = 87.5%, counts = 10" FT repeat_region complement(20827493..20827510) FT /note="AC repeat" FT exon 20827468..20827487 FT /note="XPOUND prediction, score = 0.893" FT exon 20825886..20825977 FT /note="MZEF prediction, score = 0.582" FT repeat_region complement(20825146..20825183) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 19" FT repeat_region complement(20825146..20825183) FT /note="AC repeat" FT exon complement(20824835..20824892) FT /note="MZEF prediction, score = 0.932" FT exon 20822988..20823114 FT /note="GENSCAN prediction, score = 7.06" FT exon 20822988..20823078 FT /note="MZEF prediction, score = 0.973" FT exon 20822988..20823001 FT /note="XPOUND prediction, score = 0.366" FT exon 20822377..20822392 FT /note="XPOUND prediction, score = 0.220" FT exon 20821707..20821782 FT /note="MZEF prediction, score = 0.549" FT exon 20820940..20821070 FT /note="GENSCAN prediction, score = 4.67" FT /note="MZEF prediction, score = 0.986" FT exon 20820939..20821040 FT /note="XPOUND prediction, score = 0.250" FT exon 20820323..20820424 FT /note="MZEF prediction, score = 0.929" FT exon 20819795..20819899 FT /note="MZEF prediction, score = 0.977" FT repeat_region complement(20819414..20819506) FT /rpt_family="ALU" FT /note="86% identity: matches 6..98 of consensus" FT repeat_region complement(20819231..20819356) FT /rpt_family="ALU" FT /note="81% identity: matches 159..284 of consensus" FT repeat_region complement(20818154..20818195) FT /rpt_family="L1" FT /note="92% identity: matches 130..171 of consensus" FT repeat_region complement(20817670..20817814) FT /rpt_family="L1" FT /note="84% identity: matches 1..148 of consensus" FT repeat_region complement(20817472..20817542) FT /rpt_family="L1" FT /note="88% identity: matches 112..182 of consensus" FT repeat_region 20816848..20816945 FT /rpt_family="MER2" FT /note="85% identity: matches 17..114 of consensus" FT repeat_region complement(20815872..20815885) FT /note="TTA repeat" FT repeat_region 20815332..20815444 FT /rpt_family="L1" FT /note="84% identity: matches 485..597 of consensus" FT repeat_region complement(20815332..20815443) FT /rpt_family="ALU" FT /note="88% identity: matches 457..568 of consensus" FT repeat_region complement(20815168..20815307) FT /rpt_family="ALU" FT /note="86% identity: matches 260..400 of consensus" FT repeat_region 20815241..20815304 FT /rpt_family="L1" FT /note="95% identity: matches 743..806 of consensus" FT repeat_region 20815159..20815256 FT /rpt_family="L1" FT /note="85% identity: matches 252..350 of consensus" FT repeat_region 20814372..20814643 FT /rpt_family="L1" FT /note="84% identity: matches 160..425 of consensus" FT repeat_region complement(20814372..20814599) FT /rpt_family="ALU" FT /note="88% identity: matches 57..283 of consensus" FT repeat_region complement(20814254..20814370) FT /rpt_family="aaaaaaaga repeat" FT /rpt_type=TANDEM FT /note="homology = 65.0%, counts = 13" FT repeat_region complement(20814336..20814349) FT /note="AAAAG repeat" FT repeat_region complement(20813947..20813984) FT /rpt_family="L1" FT /note="94% identity: matches 301..338 of consensus" FT repeat_region complement(20813704..20813812) FT /rpt_family="L1" FT /note="83% identity: matches 343..451 of consensus" FT repeat_region complement(20813211..20813306) FT /rpt_family="L1" FT /note="84% identity: matches 293..388 of consensus" FT repeat_region complement(20813045..20813254) FT /rpt_family="L1" FT /note="81% identity: matches 785..1001 of consensus" FT exon complement(20811694..20811732) FT /note="MZEF prediction, score = 0.883" FT exon 20810467..20810574 FT /note="MZEF prediction, score = 0.826" FT repeat_region complement(20809398..20809478) FT /rpt_family="taatttaat repeat" FT /rpt_type=TANDEM FT /note="homology = 70.4%, counts = 9" FT repeat_region complement(20809203..20809214) FT /note="CAA repeat" FT repeat_region 20807766..20808003 FT /rpt_family="ALU" FT /note="84% identity: matches 328..562 of consensus" FT repeat_region complement(20807787..20807959) FT /rpt_family="L1" FT /note="83% identity: matches 743..915 of consensus" FT repeat_region complement(20807325..20807336) FT /note="CA repeat" FT exon 20805044..20805130 FT /note="MZEF prediction, score = 0.638" FT exon 20804642..20804783 FT /note="GENSCAN prediction, score = 3.94" FT repeat_region complement(20802689..20802702) FT /note="CTAAC repeat" FT exon complement(20802514..20802562) FT /note="MZEF prediction, score = 0.618" FT repeat_region complement(20802292..20802305) FT /note="AT repeat" FT repeat_region 20801431..20801482 FT /rpt_family="L1" FT /note="92% identity: matches 547..598 of consensus" FT repeat_region complement(20801391..20801477) FT /rpt_family="ALU" FT /note="89% identity: matches 4..90 of consensus" FT repeat_region complement(20800962..20801176) FT /rpt_family="L1" FT /note="92% identity: matches 57..271 of consensus" FT exon 20801086..20801168 FT /note="XPOUND prediction, score = 0.604" FT repeat_region complement(20800592..20800924) FT /rpt_family="L1" FT /note="90% identity: matches 830..1161 of consensus" FT exon complement(20799951..20800697) FT /note="GENSCAN prediction, score = 24.03" FT repeat_region complement(20797686..20800533) FT /rpt_family="L1" FT /note="93% identity: matches 1343..4191 of consensus" FT repeat_region complement(20799288..20799301) FT /note="CACCA repeat" FT exon complement(20797678..20798604) FT /note="GENSCAN prediction, score = 28.15" FT repeat_region complement(20795991..20797661) FT /rpt_family="L1" FT /note="93% identity: matches 292..1967 of consensus" FT exon complement(20797400..20797551) FT /note="MZEF prediction, score = 0.811" FT repeat_region complement(20795880..20795957) FT /rpt_family="L1" FT /note="92% identity: matches 2301..2378 of consensus" FT exon 20795867..20795918 FT /note="XPOUND prediction, score = 0.382" FT repeat_region complement(20795819..20795841) FT /note="AAAT repeat" FT repeat_region complement(20795515..20795782) FT /rpt_family="L1" FT /note="88% identity: matches 245..514 of consensus" FT repeat_region 20795503..20795782 FT /rpt_family="ALU" FT /note="92% identity: matches 1..281 of consensus" FT misc_feature complement(20795550..20795652) FT /note="CpG_island (%GC=54.4, o/e=2.00, #CpGs=8)" FT exon 20795565..20795600 FT /note="XPOUND prediction, score = 0.335" FT exon 20793899..20793972 FT /note="MZEF prediction, score = 0.855" FT exon complement(20791527..20791619) FT /note="MZEF prediction, score = 0.528" FT repeat_region complement(20791219..20791262) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 97.7%, counts = 22" FT repeat_region complement(20791219..20791262) FT /note="TG repeat" FT repeat_region complement(20791203..20791213) FT /note="AT repeat" FT repeat_region 20790510..20790747 FT /rpt_family="ALU" FT /note="86% identity: matches 1..239 of consensus" FT repeat_region complement(20790507..20790747) FT /rpt_family="L1" FT /note="83% identity: matches 183..420 of consensus" FT repeat_region complement(20789733..20789772) FT /rpt_type=INVERTED FT /note="IR3, 75% complementary to IR3' (78184..78223)" FT repeat_region complement(20789606..20789645) FT /rpt_type=INVERTED FT /note="IR3', 75% complementary to IR3 (78057..78096)" FT exon 20789350..20789607 FT /note="GENSCAN prediction, score = 6.64" FT /note="MZEF prediction, score = 0.527" FT exon complement(20787300..20787351) FT /note="MZEF prediction, score = 0.743" FT repeat_region complement(20787079..20787110) FT /rpt_family="gttt repeat" FT /rpt_type=TANDEM FT /note="homology = 96.9%, counts = 8" FT repeat_region complement(20787078..20787110) FT /note="GTTT repeat" FT repeat_region complement(20785953..20786001) FT /rpt_family="L1" FT /note="91% identity: matches 176..224 of consensus" FT repeat_region complement(20784918..20784932) FT /note="AAAG repeat" FT repeat_region complement(20783698..20783714) FT /note="TATT repeat" FT repeat_region complement(20783598..20783647) FT /rpt_family="ALU" FT /note="92% identity: matches 232..281 of consensus" FT exon complement(20783033..20783118) FT /note="MZEF prediction, score = 0.845" FT exon 20781726..20781928 FT /note="GENSCAN prediction, score = 4.28" FT /note="MZEF prediction, score = 0.901" FT exon 20781734..20781851 FT /note="XPOUND prediction, score = 0.282" FT repeat_region complement(20779621..20779749) FT /rpt_family="L1" FT /note="84% identity: matches 161..288 of consensus" FT repeat_region 20779474..20779749 FT /rpt_family="ALU" FT /note="83% identity: matches 750..1025 of consensus" FT exon 20779721..20779738 FT /note="XPOUND prediction, score = 0.238" FT repeat_region complement(20779464..20779609) FT /rpt_type=INVERTED FT /note="IR4, 82% complementary to IR4' (89311..89455)" FT repeat_region complement(20779475..20779592) FT /rpt_family="L1" FT /note="84% identity: matches 469..585 of consensus" FT exon 20779445..20779557 FT /note="MZEF prediction, score = 0.618" FT exon 20778714..20778767 FT /note="MZEF prediction, score = 0.956" FT exon 20778680..20778767 FT /note="GENSCAN prediction, score = 3.72" FT repeat_region complement(20778374..20778518) FT /rpt_type=INVERTED FT /note="IR4', 82% complementary to IR4 (88220..88365)" FT repeat_region complement(20778403..20778513) FT /rpt_family="ALU" FT /note="86% identity: matches 308..418 of consensus" FT repeat_region 20778403..20778506 FT /rpt_family="L1" FT /note="84% identity: matches 325..426 of consensus" FT repeat_region complement(20778271..20778349) FT /rpt_family="ALU" FT /note="92% identity: matches 173..252 of consensus" FT repeat_region complement(20778246..20778349) FT /rpt_type=INVERTED FT /note="IR5, 82% complementary to IR5' (89725..89829)" FT repeat_region 20778262..20778340 FT /rpt_family="L1" FT /note="89% identity: matches 161..239 of consensus" FT repeat_region complement(20778000..20778104) FT /rpt_type=INVERTED FT /note="IR5', 82% complementary to IR5 (89480..89583)" FT repeat_region complement(20777907..20778088) FT /rpt_family="L1" FT /note="90% identity: matches 245..427 of consensus" FT misc_feature complement(20777823..20778084) FT /note="CpG_island (%GC=62.6, o/e=0.96, #CpGs=24)" FT exon 20778053..20778078 FT /note="XPOUND prediction, score = 0.282" FT repeat_region 20777820..20778065 FT /rpt_family="ALU" FT /note="93% identity: matches 1..246 of consensus" FT exon 20777892..20777906 FT /note="XPOUND prediction, score = 0.204" FT exon 20777808..20777906 FT /note="MZEF prediction, score = 0.827" FT repeat_region complement(20777820..20777904) FT /rpt_family="L1" FT /note="94% identity: matches 442..526 of consensus" FT repeat_region complement(20776459..20776472) FT /note="TTGA repeat" FT exon 20776044..20776083 FT /note="XPOUND prediction, score = 0.218" FT repeat_region complement(20775902..20775937) FT /note="AAAAT repeat" FT repeat_region complement(20775847..20775936) FT /rpt_family="aaataaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 75.6%, counts = 10" FT exon 20775472..20775528 FT /note="MZEF prediction, score = 0.690" FT repeat_region complement(20774124..20774215) FT /rpt_family="MER1" FT /note="84% identity: matches 6..94 of consensus" FT repeat_region complement(20773967..20774110) FT /rpt_family="MER1" FT /note="86% identity: matches 260..399 of consensus" FT exon 20774025..20774050 FT /note="XPOUND prediction, score = 0.242" FT repeat_region complement(20773700..20773713) FT /note="CA repeat" FT repeat_region complement(20772920..20773054) FT /rpt_family="aaatatttatctata repeat" FT /rpt_type=TANDEM FT /note="homology = 67.4%, counts = 9" FT repeat_region complement(20772664..20772675) FT /note="ACC repeat" FT repeat_region 20771497..20771757 FT /rpt_family="ALU" FT /note="85% identity: matches 22..286 of consensus" FT repeat_region complement(20771655..20771736) FT /rpt_family="L1" FT /note="91% identity: matches 178..259 of consensus" FT repeat_region complement(20771541..20771641) FT /rpt_family="L1" FT /note="90% identity: matches 770..870 of consensus" FT repeat_region complement(20771487..20771536) FT /rpt_family="THR" FT /note="90% identity: matches 40..89 of consensus" FT exon 20770921..20770937 FT /note="XPOUND prediction, score = 0.277" FT repeat_region complement(20770594..20770652) FT /rpt_family="THE" FT /note="91% identity: matches 1..59 of consensus" FT repeat_region complement(20770260..20770447) FT /rpt_family="THE" FT /note="87% identity: matches 166..352 of consensus" FT exon 20770031..20770237 FT /note="GENSCAN prediction, score = 14.15" FT /note="MZEF prediction, score = 0.990" FT exon 20769652..20769665 FT /note="XPOUND prediction, score = 0.217" FT repeat_region complement(20766837..20768616) FT /rpt_family="L1" FT /note="97% identity: matches 353..2132 of consensus" FT exon complement(20768410..20768561) FT /note="MZEF prediction, score = 0.688" FT exon 20766878..20766909 FT /note="XPOUND prediction, score = 0.419" FT repeat_region complement(20766633..20766646) FT /note="AAGG repeat" FT repeat_region complement(20766530..20766542) FT /note="AATG repeat" FT exon 20764868..20765072 FT /note="GENSCAN prediction, score = 10.48" FT /note="MZEF prediction, score = 0.971" FT exon 20764992..20765056 FT /note="XPOUND prediction, score = 0.383" FT repeat_region complement(20764495..20764553) FT /rpt_family="ALU" FT /note="89% identity: matches 1..56 of consensus" FT repeat_region complement(20764294..20764524) FT /rpt_family="ALU" FT /note="93% identity: matches 6..238 of consensus" FT repeat_region 20764277..20764524 FT /rpt_family="L1" FT /note="87% identity: matches 250..500 of consensus" FT repeat_region complement(20764344..20764394) FT /rpt_type=INVERTED FT /note="IR6, 80% complementary to IR6' (104448..104498)" FT repeat_region complement(20763331..20763381) FT /rpt_type=INVERTED FT /note="IR6', 80% complementary to IR6 (103435..103485)" FT repeat_region 20763331..20763375 FT /rpt_family="ALU" FT /note="93% identity: matches 159..203 of consensus" FT repeat_region 20761444..20761718 FT /rpt_family="L1" FT /note="87% identity: matches 251..526 of consensus" FT repeat_region complement(20761444..20761708) FT /rpt_family="ALU" FT /note="89% identity: matches 313..577 of consensus" FT repeat_region complement(20761454..20761504) FT /rpt_type=INVERTED FT /note="IR7, 88% complementary to IR7' (106949..106999)" FT repeat_region complement(20761093..20761156) FT /rpt_family="ALU" FT /note="89% identity: matches 147..210 of consensus" FT STS complement(20760872..20761071) FT /standard_name="SHGC-5879 (D7S467), Map: 9, Homo sapiens" FT /note="GenBank Accession Number: G17308" FT repeat_region complement(20761036..20761047) FT /note="AAT repeat" FT repeat_region complement(20760830..20760880) FT /rpt_type=INVERTED FT /note="IR7', 88% complementary to IR7 (106325..106375)" FT repeat_region 20760830..20760880 FT /rpt_family="ALU" FT /note="92% identity: matches 215..265 of consensus" FT exon 20760696..20760705 FT /note="XPOUND prediction, score = 0.447" FT exon 20759719..20759779 FT /note="MZEF prediction, score = 0.855" FT exon 20759696..20759779 FT /note="GENSCAN prediction, score = 0.62" FT exon 20759644..20759668 FT /note="XPOUND prediction, score = 0.224" FT repeat_region 20759202..20759666 FT /rpt_family="L1" FT /note="97% identity: matches 4511..4975 of consensus" FT exon 20759242..20759443 FT /note="XPOUND prediction, score = 0.463" FT repeat_region 20758739..20759196 FT /rpt_family="L1" FT /note="97% identity: matches 313..770 of consensus" FT exon 20759044..20759117 FT /note="XPOUND prediction, score = 0.275" FT repeat_region complement(20758527..20758740) FT /rpt_family="L1" FT /note="94% identity: matches 815..1028 of consensus" FT repeat_region complement(20758395..20758508) FT /rpt_family="L1" FT /note="97% identity: matches 208..321 of consensus" FT repeat_region complement(20758369..20758381) FT /note="ATA repeat" FT repeat_region complement(20758344..20758357) FT /note="AAAAG repeat" FT repeat_region complement(20758267..20758281) FT /note="AAAC repeat" FT exon 20758180..20758190 FT /note="XPOUND prediction, score = 0.206" FT exon 20758089..20758190 FT /note="GENSCAN prediction, score = 8.07" FT repeat_region complement(20757718..20757729) FT /note="CCT repeat" FT exon 20757667..20757712 FT /note="XPOUND prediction, score = 0.313" FT exon 20757617..20757669 FT /note="GENSCAN prediction, score = 0.78" FT repeat_region 20757096..20757228 FT /rpt_family="L1" FT /note="87% identity: matches 465..597 of consensus" FT repeat_region complement(20756946..20757220) FT /rpt_family="ALU" FT /note="90% identity: matches 8..282 of consensus" FT repeat_region complement(20755906..20755942) FT /rpt_family="ALU" FT /note="100% identity: matches 972..1008 of consensus" FT repeat_region complement(20755805..20755836) FT /rpt_family="aaac repeat" FT /rpt_type=TANDEM FT /note="homology = 90.6%, counts = 8" FT repeat_region complement(20755810..20755827) FT /note="AACA repeat" FT repeat_region complement(20751325..20753702) FT /rpt_family="L1" FT /note="96% identity: matches 3489..5869 of consensus" FT exon complement(20752568..20753596) FT /note="GENSCAN prediction, score = 21.33" FT exon complement(20752742..20752893) FT /note="MZEF prediction, score = 0.698" FT repeat_region complement(20751168..20751303) FT /rpt_family="L1" FT /note="96% identity: matches 1166..1301 of consensus" FT exon 20751213..20751280 FT /note="XPOUND prediction, score = 0.577" FT exon 20751191..20751280 FT /note="MZEF prediction, score = 0.557" FT exon complement(20750066..20750276) FT /note="MZEF prediction, score = 0.538" FT repeat_region complement(20749621..20749634) FT /note="AGCAT repeat" FT exon complement(20748395..20748465) FT /note="MZEF prediction, score = 0.821" FT exon complement(20746546..20746596) FT /note="MZEF prediction, score = 0.924" FT repeat_region 20745291..20745376 FT /rpt_family="L1" FT /note="84% identity: matches 499..584 of consensus" FT repeat_region complement(20745291..20745367) FT /rpt_family="ALU" FT /note="93% identity: matches 157..233 of consensus" FT repeat_region complement(20745127..20745278) FT /rpt_family="ALU" FT /note="85% identity: matches 126..279 of consensus" FT repeat_region 20745135..20745203 FT /rpt_family="L1" FT /note="91% identity: matches 658..726 of consensus" FT exon 20744856..20744926 FT /note="MZEF prediction, score = 0.783" FT exon complement(20744632..20744777) FT /note="MZEF prediction, score = 0.558" FT repeat_region complement(20744150..20744162) FT /note="CCAC repeat" FT exon complement(20743094..20743256) FT /note="GENSCAN prediction, score = 4.03" FT /note="MZEF prediction, score = 0.652" FT exon 20742424..20742508 FT /note="XPOUND prediction, score = 0.343" FT exon complement(20742388..20742506) FT /note="GENSCAN prediction, score = 0.82" FT exon 20740235..20740339 FT /note="MZEF prediction, score = 0.978" FT repeat_region 20739322..20739601 FT /rpt_family="ALU" FT /note="89% identity: matches 1..276 of consensus" FT repeat_region complement(20739335..20739562) FT /rpt_family="L1" FT /note="86% identity: matches 200..424 of consensus" FT repeat_region complement(20738840..20738897) FT /rpt_family="MER33" FT /note="87% identity: matches 126..183 of consensus" FT STS complement(20738515..20738639) FT /standard_name="WI-2374 (DXYS5Y), Map: 916_C_10, Homo FT sapiens" FT /note="GenBank Accession Number: G03950" FT exon 20737959..20738023 FT /note="XPOUND prediction, score = 0.749" FT exon 20737752..20737796 FT /note="MZEF prediction, score = 0.738" FT exon 20737106..20737152 FT /note="MZEF prediction, score = 0.560" FT repeat_region complement(20736960..20736997) FT /rpt_type=INVERTED FT /note="IR8, 84% complementary to IR8' (130921..130958)" FT repeat_region complement(20736871..20736908) FT /rpt_type=INVERTED FT /note="IR8', 84% complementary to IR8 (130832..130869)" FT repeat_region complement(20735582..20735768) FT /rpt_type=INVERTED FT /note="IR9, 77% complementary to IR9' (133879..134058)" FT repeat_region complement(20735721..20735763) FT /rpt_family="ALU" FT /note="97% identity: matches 59..101 of consensus" FT repeat_region complement(20735612..20735667) FT /rpt_family="ALU" FT /note="92% identity: matches 449..504 of consensus" FT repeat_region complement(20735486..20735501) FT /note="GGGAG repeat" FT repeat_region complement(20735462..20735484) FT /note="GGAA repeat" FT repeat_region complement(20735449..20735484) FT /rpt_family="ggaa repeat" FT /rpt_type=TANDEM FT /note="homology = 86.1%, counts = 9" FT repeat_region complement(20734874..20734911) FT /rpt_family="ALU" FT /note="97% identity: matches 26..62 of consensus" FT repeat_region 20734679..20734839 FT /rpt_family="L1" FT /note="83% identity: matches 178..338 of consensus" FT repeat_region complement(20734678..20734839) FT /rpt_family="ALU" FT /note="84% identity: matches 239..400 of consensus" FT repeat_region complement(20734013..20734031) FT /note="TTTG repeat" FT repeat_region 20733951..20734001 FT /rpt_family="ALU" FT /note="90% identity: matches 223..273 of consensus" FT repeat_region 20733862..20733950 FT /rpt_family="ALU" FT /note="86% identity: matches 145..233 of consensus" FT repeat_region complement(20733771..20733950) FT /rpt_type=INVERTED FT /note="IR9', 77% complementary to IR9 (132061..132247)" FT repeat_region 20733730..20733823 FT /rpt_family="ALU" FT /note="84% identity: matches 11..104 of consensus" FT repeat_region complement(20733719..20733823) FT /rpt_family="L1" FT /note="82% identity: matches 831..935 of consensus" FT repeat_region complement(20733364..20733683) FT /rpt_family="L1" FT /note="95% identity: matches 24..343 of consensus" FT repeat_region complement(20733360..20733372) FT /note="ATA repeat" FT repeat_region complement(20733031..20733054) FT /rpt_type=INVERTED FT /note="IR10, 87% complementary to IR10' (135572..135595)" FT repeat_region complement(20732234..20732257) FT /rpt_type=INVERTED FT /note="IR10', 87% complementary to IR10 (134775..134798)" FT exon 20732151..20732167 FT /note="XPOUND prediction, score = 0.208" FT repeat_region complement(20731972..20732100) FT /rpt_family="L1" FT /note="90% identity: matches 589..717 of consensus" FT exon 20731967..20732056 FT /note="MZEF prediction, score = 0.678" FT repeat_region complement(20731629..20731905) FT /rpt_type=INVERTED FT /note="IR11, 85% complementary to IR11' (136588..136866)" FT repeat_region complement(20731640..20731904) FT /rpt_family="ALU" FT /note="89% identity: matches 11..275 of consensus" FT repeat_region 20731656..20731901 FT /rpt_family="L1" FT /note="84% identity: matches 182..424 of consensus" FT repeat_region complement(20731585..20731599) FT /note="GATG repeat" FT exon complement(20731552..20731598) FT /note="MZEF prediction, score = 0.900" FT STS complement(20731223..20731390) FT /standard_name="SHGC-6726 (D7S467), Map: 9, Homo sapiens" FT /note="GenBank Accession Number: G17320" FT exon 20731180..20731286 FT /note="XPOUND prediction, score = 0.781" FT repeat_region complement(20731240..20731283) FT /note="TTG repeat" FT repeat_region complement(20731236..20731283) FT /rpt_family="ttg repeat" FT /rpt_type=TANDEM FT /note="homology = 95.8%, counts = 16" FT repeat_region complement(20730963..20731241) FT /rpt_type=INVERTED FT /note="IR11', 85% complementary to IR11 (135924..136200)" FT repeat_region complement(20731108..20731229) FT /rpt_family="L1" FT /note="87% identity: matches 168..289 of consensus" FT repeat_region 20730964..20731229 FT /rpt_family="ALU" FT /note="86% identity: matches 12..275 of consensus" FT repeat_region complement(20730953..20731080) FT /rpt_family="L1" FT /note="92% identity: matches 469..596 of consensus" FT repeat_region complement(20729449..20729514) FT /rpt_family="THE" FT /note="86% identity: matches 60..125 of consensus" FT repeat_region complement(20726071..20726085) FT /note="TTTCA repeat" FT exon 20725406..20725462 FT /note="MZEF prediction, score = 0.561" FT repeat_region complement(20725170..20725197) FT /rpt_family="attg repeat" FT /rpt_type=TANDEM FT /note="homology = 92.9%, counts = 7" FT repeat_region complement(20725169..20725195) FT /note="TGAT repeat" FT repeat_region complement(20725055..20725164) FT /rpt_family="L1" FT /note="83% identity: matches 318..428 of consensus" FT repeat_region 20724888..20725164 FT /rpt_family="ALU" FT /note="83% identity: matches 1..275 of consensus" FT repeat_region complement(20724896..20724934) FT /rpt_family="MIR" FT /note="94% identity: matches 1..39 of consensus" FT repeat_region complement(20724131..20724187) FT /rpt_family="THE" FT /note="89% identity: matches 5..61 of consensus" FT repeat_region complement(20724003..20724089) FT /rpt_family="THE" FT /note="85% identity: matches 70..156 of consensus" FT repeat_region complement(20723768..20723967) FT /rpt_family="THE" FT /note="84% identity: matches 160..361 of consensus" FT repeat_region 20723451..20723496 FT /rpt_family="L1" FT /note="95% identity: matches 471..516 of consensus" FT repeat_region complement(20723271..20723496) FT /rpt_family="L1" FT /note="83% identity: matches 241..462 of consensus" FT repeat_region 20723229..20723437 FT /rpt_family="ALU" FT /note="88% identity: matches 860..1068 of consensus" FT repeat_region complement(20723363..20723416) FT /rpt_type=INVERTED FT /note="IR12, 79% complementary to IR12' (145646..145699)" FT exon 20723250..20723305 FT /note="XPOUND prediction, score = 0.234" FT exon 20722423..20722480 FT /note="GENSCAN prediction, score = 0.38" FT repeat_region complement(20722160..20722206) FT /rpt_family="ALU" FT /note="91% identity: matches 865..911 of consensus" FT repeat_region complement(20722130..20722183) FT /rpt_type=INVERTED FT /note="IR12', 79% complementary to IR12 (144413..144466)" FT repeat_region complement(20722035..20722046) FT /note="AG repeat" FT repeat_region complement(20721864..20722031) FT /rpt_family="ggag repeat" FT /rpt_type=TANDEM FT /note="homology = 68.5%, counts = 42" FT repeat_region complement(20722003..20722023) FT /note="GAAG repeat" FT repeat_region complement(20721981..20722002) FT /note="GAGG repeat" FT repeat_region complement(20721948..20721961) FT /note="GGGAG repeat" FT repeat_region complement(20721870..20721885) FT /note="AGGGG repeat" FT repeat_region complement(20721701..20721714) FT /note="TTG repeat" FT repeat_region complement(20721435..20721699) FT /rpt_family="L1" FT /note="84% identity: matches 162..422 of consensus" FT repeat_region 20721420..20721699 FT /rpt_family="ALU" FT /note="87% identity: matches 2..279 of consensus" FT exon 20721378..20721433 FT /note="XPOUND prediction, score = 0.304" FT exon 20720379..20720533 FT /note="GENSCAN prediction, score = 4.15" FT /note="MZEF prediction, score = 0.724" FT exon 20720437..20720456 FT /note="XPOUND prediction, score = 0.210" FT exon 20720389..20720406 FT /note="XPOUND prediction, score = 0.228" FT repeat_region complement(20720318..20720333) FT /note="AC repeat" FT exon 20719807..20719908 FT /note="GENSCAN prediction, score = 4.35" FT repeat_region 20719195..20719382 FT /rpt_family="L1" FT /note="86% identity: matches 749..936 of consensus" FT repeat_region complement(20719099..20719370) FT /rpt_family="ALU" FT /note="87% identity: matches 10..281 of consensus" FT repeat_region complement(20719079..20719092) FT /note="AAAAG repeat" FT exon 20719012..20719061 FT /note="MZEF prediction, score = 0.661" FT exon complement(20718829..20718920) FT /note="MZEF prediction, score = 0.525" FT repeat_region complement(20716339..20716352) FT /note="AT repeat" FT repeat_region complement(20715474..20715633) FT /rpt_family="aaaataaaatttataaattt repeat" FT /rpt_type=TANDEM FT /note="homology = 62.5%, counts = 8" FT exon 20715321..20715409 FT /note="MZEF prediction, score = 0.934" FT repeat_region complement(20714634..20714700) FT /note="AGGA repeat" FT repeat_region complement(20714605..20714700) FT /rpt_family="agga repeat" FT /rpt_type=TANDEM FT /note="homology = 91.7%, counts = 24" FT repeat_region complement(20714604..20714633) FT /note="CAGG repeat" FT exon 20713097..20713119 FT /note="XPOUND prediction, score = 0.513" FT repeat_region complement(20712732..20713026) FT /rpt_type=INVERTED FT /note="IR13, 86% complementary to IR13' (155153..155447)" FT repeat_region 20712821..20713010 FT /rpt_family="L1" FT /note="86% identity: matches 383..575 of consensus" FT repeat_region complement(20712768..20713010) FT /rpt_family="ALU" FT /note="88% identity: matches 18..260 of consensus" FT repeat_region 20712759..20712843 FT /rpt_family="L1" FT /note="88% identity: matches 170..254 of consensus" FT repeat_region complement(20712382..20712676) FT /rpt_type=INVERTED FT /note="IR13', 86% complementary to IR13 (154803..155097)" FT repeat_region complement(20712391..20712652) FT /rpt_family="L1" FT /note="85% identity: matches 167..424 of consensus" FT repeat_region 20712378..20712639 FT /rpt_family="ALU" FT /note="90% identity: matches 2..264 of consensus" FT exon 20711753..20711944 FT /note="GENSCAN prediction, score = 2.17" FT exon 20711753..20711926 FT /note="MZEF prediction, score = 0.722" FT exon 20711798..20711806 FT /note="XPOUND prediction, score = 0.221" FT repeat_region 20710315..20710595 FT /rpt_family="ALU" FT /note="87% identity: matches 581..863 of consensus" FT repeat_region complement(20710315..20710519) FT /rpt_family="L1" FT /note="85% identity: matches 388..594 of consensus" FT repeat_region complement(20710229..20710250) FT /rpt_type=INVERTED FT /note="IR14, 100% complementary to IR14' (158302..158323)" FT repeat_region complement(20709506..20709527) FT /rpt_type=INVERTED FT /note="IR14', 100% complementary to IR14 (157579..157600)" FT repeat_region 20708637..20708728 FT /rpt_family="ALU" FT /note="86% identity: matches 146..236 of consensus" FT repeat_region complement(20708510..20708576) FT /rpt_family="L1" FT /note="88% identity: matches 846..911 of consensus" FT repeat_region 20708493..20708576 FT /rpt_family="ALU" FT /note="86% identity: matches 10..89 of consensus" FT repeat_region 20707618..20707732 FT /rpt_family="MER28" FT /note="87% identity: matches 47..158 of consensus" FT exon 20707623..20707673 FT /note="XPOUND prediction, score = 0.322" FT repeat_region 20707551..20707590 FT /rpt_family="MER28" FT /note="95% identity: matches 181..220 of consensus" FT exon 20706889..20706905 FT /note="XPOUND prediction, score = 0.217" FT exon 20706212..20706238 FT /note="XPOUND prediction, score = 0.247" FT repeat_region complement(20705969..20706228) FT /rpt_family="ALU" FT /note="80% identity: matches 140..399 of consensus" FT repeat_region 20706188..20706226 FT /rpt_family="MIR" FT /note="94% identity: matches 4..42 of consensus" FT exon 20705959..20706211 FT /note="MZEF prediction, score = 0.936" FT exon 20703871..20704025 FT /note="MZEF prediction, score = 0.655" FT repeat_region complement(20703490..20703523) FT /rpt_family="L1" FT /note="97% identity: matches 284..317 of consensus" FT exon 20703300..20703337 FT /note="XPOUND prediction, score = 0.300" FT repeat_region complement(20703012..20703026) FT /note="GTTTT repeat" FT repeat_region 20702950..20703006 FT /rpt_family="ALU" FT /note="92% identity: matches 224..280 of consensus" FT repeat_region complement(20702950..20703006) FT /rpt_family="L1" FT /note="89% identity: matches 160..216 of consensus" FT repeat_region complement(20702950..20702994) FT /rpt_type=INVERTED FT /note="IR15, 84% complementary to IR15' (165654..165698)" FT repeat_region 20702218..20702391 FT /rpt_family="L1" FT /note="82% identity: matches 751..924 of consensus" FT repeat_region complement(20702229..20702388) FT /rpt_family="ALU" FT /note="83% identity: matches 177..334 of consensus" FT repeat_region complement(20702125..20702225) FT /rpt_family="ALU" FT /note="85% identity: matches 177..277 of consensus" FT repeat_region complement(20702131..20702175) FT /rpt_type=INVERTED FT /note="IR15', 84% complementary to IR15 (164835..164879)" FT repeat_region complement(20702084..20702119) FT /note="TAA repeat" FT repeat_region complement(20702075..20702119) FT /rpt_family="taa repeat" FT /rpt_type=TANDEM FT /note="homology = 86.7%, counts = 15" FT exon 20701822..20701910 FT /note="MZEF prediction, score = 0.796" FT repeat_region complement(20701424..20701434) FT /note="AC repeat" FT exon 20700879..20700953 FT /note="GENSCAN prediction, score = 1.29" FT repeat_region complement(20699852..20699864) FT /note="GGA repeat" FT repeat_region complement(20699773..20699828) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 89.3%, counts = 28" FT repeat_region complement(20699773..20699814) FT /note="AT repeat" FT repeat_region complement(20699538..20699751) FT /rpt_type=INVERTED FT /note="IR16, 75% complementary to IR16' (169212..169427)" FT repeat_region 20699473..20699736 FT /rpt_family="ALU" FT /note="88% identity: matches 15..284 of consensus" FT repeat_region complement(20699464..20699736) FT /rpt_family="L1" FT /note="87% identity: matches 245..521 of consensus" FT repeat_region complement(20698626..20698671) FT /rpt_family="ALU" FT /note="95% identity: matches 414..459 of consensus" FT repeat_region 20698624..20698661 FT /rpt_family="MIR" FT /note="94% identity: matches 1..38 of consensus" FT repeat_region complement(20698402..20698617) FT /rpt_type=INVERTED FT /note="IR16', 75% complementary to IR16 (168078..168291)" FT repeat_region complement(20698581..20698614) FT /rpt_family="ALU" FT /note="97% identity: matches 308..341 of consensus" FT repeat_region complement(20698510..20698566) FT /rpt_family="ALU" FT /note="89% identity: matches 1010..1066 of consensus" FT repeat_region complement(20698406..20698529) FT /rpt_family="ALU" FT /note="83% identity: matches 171..293 of consensus" FT repeat_region complement(20698366..20698391) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 96.2%, counts = 13" FT repeat_region complement(20698365..20698391) FT /note="TG repeat" FT exon 20697779..20697899 FT /note="MZEF prediction, score = 0.605" FT exon 20697768..20697899 FT /note="GENSCAN prediction, score = 1.29" FT exon 20697638..20697671 FT /note="XPOUND prediction, score = 0.520" FT repeat_region 20697003..20697045 FT /rpt_family="THE" FT /note="93% identity: matches 35..77 of consensus" FT exon 20696900..20696927 FT /note="XPOUND prediction, score = 0.924" FT repeat_region complement(20696802..20696827) FT /note="ATT repeat" FT repeat_region complement(20696801..20696827) FT /rpt_family="att repeat" FT /rpt_type=TANDEM FT /note="homology = 96.3%, counts = 9" FT repeat_region 20696532..20696787 FT /rpt_family="ALU" FT /note="83% identity: matches 12..266 of consensus" FT repeat_region complement(20696541..20696663) FT /rpt_family="L1" FT /note="83% identity: matches 301..418 of consensus" FT repeat_region complement(20696337..20696351) FT /note="TG repeat" FT exon 20695070..20695117 FT /note="XPOUND prediction, score = 0.438" FT exon 20694519..20694563 FT /note="MZEF prediction, score = 0.556" FT repeat_region 20693910..20694008 FT /rpt_family="THR" FT /note="85% identity: matches 1..99 of consensus" FT repeat_region complement(20693749..20694007) FT /rpt_family="ALU" FT /note="86% identity: matches 137..395 of consensus" FT repeat_region 20693730..20693853 FT /rpt_family="L1" FT /note="87% identity: matches 163..286 of consensus" FT exon 20693731..20693852 FT /note="MZEF prediction, score = 0.861" FT repeat_region complement(20693706..20693729) FT /rpt_family="taaa repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 6" FT repeat_region complement(20693704..20693729) FT /note="TAAA repeat" FT repeat_region complement(20693166..20693177) FT /note="AG repeat" FT repeat_region complement(20692316..20692327) FT /note="TA repeat" FT repeat_region complement(20691985..20692049) FT /rpt_family="ALU" FT /note="93% identity: matches 291..355 of consensus" FT repeat_region 20691986..20692034 FT /rpt_family="L1" FT /note="91% identity: matches 376..424 of consensus" FT repeat_region complement(20691500..20691919) FT /rpt_family="ALU" FT /note="86% identity: matches 156..571 of consensus" FT repeat_region 20691785..20691886 FT /rpt_family="L1" FT /note="95% identity: matches 155..256 of consensus" FT repeat_region 20691504..20691768 FT /rpt_family="L1" FT /note="88% identity: matches 250..516 of consensus" FT repeat_region complement(20691464..20691478) FT /note="AATT repeat" FT repeat_region complement(20691451..20691462) FT /note="AAT repeat" FT repeat_region 20690942..20691227 FT /rpt_family="L1" FT /note="84% identity: matches 143..424 of consensus" FT repeat_region complement(20690955..20691220) FT /rpt_family="ALU" FT /note="89% identity: matches 157..422 of consensus" FT exon complement(20690747..20690896) FT /note="MZEF prediction, score = 0.718" FT repeat_region complement(20690668..20690789) FT /rpt_family="ALU" FT /note="83% identity: matches 394..514 of consensus" FT repeat_region complement(20690598..20690651) FT /rpt_family="ALU" FT /note="92% identity: matches 197..250 of consensus" FT misc_feature 20867829..20917097 FT /note="annotated region of clone" FT mRNA join(AL354879.12:50276..50426,AL354879.12:50658..50793, FT complement(AL445624.3:173266..173310), FT complement(AL445624.3:152420..152508), FT complement(AL445624.3:149962..150036), FT complement(AL445624.3:147296..147450), FT complement(AL445624.3:127490..127594), FT complement(AL445624.3:109639..109740), FT complement(AL445624.3:102757..102961), FT complement(AL445624.3:97592..97798), FT complement(AL445624.3:89062..89149), FT complement(AL445624.3:85901..86103), FT complement(AL445624.3:78222..78479), FT complement(AL445624.3:47930..48034), FT complement(AL445624.3:47405..47506), FT complement(AL445624.3:46759..46889), FT complement(AL445624.3:44715..44841), FT complement(AL445624.3:5118..5252), FT complement(AL445624.3:1854..1904), FT complement(AL445624.3:818..901),20874680..20874806, FT 20881870..20882055,20885108..20885229,20907149..20907241, FT 20912865..20912953,20916892..20916936, FT complement(AL662879.5:152631..152739), FT complement(AL662879.5:149982..150098), FT complement(AL662879.5:146803..147041), FT complement(AL662879.5:143296..143385), FT complement(AL662879.5:131625..131772), FT complement(AL662879.5:129579..129698), FT complement(AL662879.5:128006..128128), FT complement(AL662879.5:127471..127548), FT complement(AL662879.5:126724..126795), FT complement(AL662879.5:125301..125403), FT complement(AL662879.5:123334..123414), FT complement(AL662879.5:99851..99979), FT complement(AL662879.5:97945..98060), FT complement(AL662879.5:94713..94973), FT complement(AL662879.5:93953..94042), FT complement(AL662879.5:89934..90111), FT complement(AL662879.5:87970..88067), FT complement(AL662879.5:86025..86276), FT complement(AL662879.5:83071..83146), FT complement(AL662879.5:80444..80843)) FT /gene="KIAA1797" FT /locus_tag="RP11-279F22.1-001" FT /product="KIAA1797" FT /note="match: cDNAs: Em:AB058700.1 Em:AK000382.1 FT Em:AK055116.1 Em:AK056522.1 Em:AK172818.1 Em:AL512738.1 FT Em:AY139834.1 Em:BC001246.1 Em:CR607345.1 Em:CR608016.1" FT /note="match: ESTs: Em:AA443883.1 Em:AA969025.1 FT Em:AI081999.1 Em:AI130992.1 Em:AI201522.1 Em:AI376928.1 FT Em:AL539295.3 Em:AL542355.3 Em:AL567771.3 Em:AL711955.1 FT Em:AW087242.1 Em:AW316588.1 Em:AW837578.1 Em:AW837582.1 FT Em:AW954262.1 Em:BE164598.1 Em:BE378895.1 Em:BE885081.1 FT Em:BE910349.1 Em:BF206698.1 Em:BF445512.1 Em:BF446957.1 FT Em:BF591328.1 Em:BF886728.1 Em:BF959554.1 Em:BF962861.1 FT Em:BF963479.1 Em:BG474026.1 Em:BG479275.1 Em:BG750216.1 FT Em:BG777441.1 Em:BI035291.1 Em:BI051589.1 Em:BI084055.1 FT Em:BI256961.1 Em:BM272641.1 Em:BM977948.1 Em:BQ009318.1 FT Em:BQ057330.1 Em:BQ071018.1 Em:BQ428170.1 Em:BQ573802.1 FT Em:BQ573850.1 Em:BQ776091.1 Em:BU541332.1 Em:BU678536.1 FT Em:BU738727.1 Em:BX283250.1 Em:BX283774.1 Em:CA424291.1 FT Em:CB850635.1 Em:CF995832.1 Em:CK000130.1 Em:CN365675.1 FT Em:CN365676.1 Em:CN365677.1 Em:CN365681.1 Em:CN365682.1 FT Em:CN365685.1 Em:CN365686.1 Em:CN365687.1" FT CDS join(complement(AL445624.3:152420..152476), FT complement(AL445624.3:149962..150036), FT complement(AL445624.3:147296..147450), FT complement(AL445624.3:127490..127594), FT complement(AL445624.3:109639..109740), FT complement(AL445624.3:102757..102961), FT complement(AL445624.3:97592..97798), FT complement(AL445624.3:89062..89149), FT complement(AL445624.3:85901..86103), FT complement(AL445624.3:78222..78479), FT complement(AL445624.3:47930..48034), FT complement(AL445624.3:47405..47506), FT complement(AL445624.3:46759..46889), FT complement(AL445624.3:44715..44841), FT complement(AL445624.3:5118..5252), FT complement(AL445624.3:1854..1904), FT complement(AL445624.3:818..901),20874680..20874806, FT 20881870..20882055,20885108..20885229,20907149..20907241, FT 20912865..20912953,20916892..20916936, FT complement(AL662879.5:152631..152739), FT complement(AL662879.5:149982..150098), FT complement(AL662879.5:146803..147041), FT complement(AL662879.5:143296..143385), FT complement(AL662879.5:131625..131772), FT complement(AL662879.5:129579..129698), FT complement(AL662879.5:128006..128128), FT complement(AL662879.5:127471..127548), FT complement(AL662879.5:126724..126795), FT complement(AL662879.5:125301..125403), FT complement(AL662879.5:123334..123414), FT complement(AL662879.5:99851..99979), FT complement(AL662879.5:97945..98060), FT complement(AL662879.5:94713..94973), FT complement(AL662879.5:93953..94042), FT complement(AL662879.5:89934..90111), FT complement(AL662879.5:87970..88067), FT complement(AL662879.5:86025..86276), FT complement(AL662879.5:83071..83146), FT complement(AL662879.5:80770..80843)) FT /gene="KIAA1797" FT /locus_tag="RP11-279F22.1-001" FT /standard_name="OTTHUMP00000069845" FT /product="KIAA1797" FT /note="match: proteins: Tr:Q8IZG0 Tr:Q96MS9" FT /protein_id="CAH73851.1" FT /translation="MSDDIRKRFEFPNSLIQSQAVGHLIAAVLKENGFSEKIHQSTNQT FT PALNLLWEKCCSDNVVVRTACCEGLVALVAQDHAEFSYVLNGILNLIPSTRNTHGLIKA FT IMHLLQMQALKEGQGGEKNIQSIYTIRNHPHPLITVLEHRPDCWPVFLQQLTAFFQQCP FT ERLEVSCIQIMAPFLWYLYCEPSQLQEYAKLRLALLKVLLQPQVLCDKDQPSILEQQIL FT QLCCDIVPCLQVKDLIQTTEAMMFIEEVCLSLLRHPVFWKIQLTQMSLQLLCVSEVSLK FT ITGECSSSIHLLEHSVELLKEDFPVELVIIGIALLLLQTPASQQKPILNLALKLLSVTE FT DQKIPKSSLLLVMPILQILSSTALEDCISVDEEGPSRQQLALNLLEMIQQECYRDDHQK FT LSYKLVCPVTSMYGTIFTAWRILEVMTDSSAASDWLASVESLLPITAVIPAPAFLLLAH FT LLVEDKGQNLHQILKVTTELAQADSSQVPNLIPVLMFKLGRPLEPILYNDILYTLPKLG FT VHKVCIGQILRIIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRFMAVSDVPSLSVG FT KEVQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHA FT LCQAEVVCIRSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNTTEYENFKVQVLSF FT LWTHTQNKDPIVANAAYRSLANFTAGEHTILHLPEKIRPEIPIPEELDDDEDVEDVDLS FT VPGSCYLKLLSLTPPLVLPALEEFFTSLVKQEMVNMPRGIYHSALKGGARSDQGKTVAG FT IPNFILKMYETNKQPGLKPGLAGGMLFCYDVSMYQSKDGKPLNRLMASRGRSFKQTSLA FT LVHEVHIQLSEWHRAIFLPQAWLAYMNRAYHAILQGRLGELELQLKHGKEEPEEVQYKK FT STAWLWVRDMLTDEITKAAAKESPVVKGNALLALSSLAVVVSRHEASLSSDSDGLLEVQ FT PNFLSMKEWVSMVLDTLLVIVDSHYQPRGQLLSWFYYKSYSGENTASAIARSAAATALS FT LLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGLALGMFLSRLCEEKLSD FT ISGQEMNLLLMKSLDALENCCFDTSLEYNTGCILGVGLVLSLMSHSSQMQSRVHVAALL FT RKLSAHVDDSGSQSRTFQEVLAYTLSCVCTSAFSAGIIEATEAEDVMNKLRLLVENSQQ FT TSGFALALGNIVHGLSVCGHGKAEDLGSKLLPAWIRIVLTEGTPTMLCLAALHGMVALV FT GSEGDVMQLKSEAIQTSHFQGRLNEVIRTLTQVISVSGVIGLQSNAVWLLGHLHLSTLS FT SSQSRASVPTDYSYLPESSFIGAAIGFFITGGKKGPESVPPSLLKVVMKPIATVGESYQ FT YPPVNWAALLSPLMRLNFGEEIQQLCLEIMVTQAQSSQNAAALLGLWVTPPLIHSLSLN FT TKRYLLISAPLWIKHISDEQILGFVENLMVAVFKAASPLGSPELCPSALHGLSQAMKLP FT SPAHHLWSLLSEATGKIFDLLPNKIRRKDLELYISIAKCLLEMTDDDANRIAQVTKSNI FT EKAAFVKLYLVSQGRFPLVNLTDMLSVAVQHREKEVLAWMILHSLYQARIVSHANTGVL FT KRMEWLLELMGYIRNVAYQSTSFHNTALDKALDFFLLIFATAVVAWADHTAPLLLGLSA FT SWLPWHQENGPAGPVPSFLGRSPMHRVTLQEVLTLLPNSMALLLQKEPWKEQTQKFIDW FT LFSIMESPKEALSAQSRDLLKATLLSLRVLPEFKKKAVWTRAYGW" FT misc_feature complement(20917098..21076397) FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon complement(21006365..21006497) FT /note="MZEF prediction, score = 0.616" FT exon 21006368..21006455 FT /note="XPOUND prediction, score = 0.397" FT exon 21005576..21005658 FT /note="XPOUND prediction, score = 0.499" FT exon 21004996..21005096 FT /note="XPOUND prediction, score = 0.605" FT repeat_region 21004641..21004717 FT /rpt_family="THE" FT /note="91% identity: matches 5..85 of consensus" FT repeat_region complement(21004023..21004303) FT /rpt_family="ALU" FT /note="87% identity: matches 3..281 of consensus" FT repeat_region 21004019..21004284 FT /rpt_family="L1" FT /note="83% identity: matches 157..417 of consensus" FT exon complement(21003410..21003466) FT /note="MZEF prediction, score = 0.796" FT repeat_region complement(21002322..21002340) FT /rpt_type=INVERTED FT /note="IR7, 94% complementary to IR7' (74372..74390)" FT repeat_region complement(21002008..21002026) FT /rpt_type=INVERTED FT /note="IR7', 94% complementary to IR7 (74058..74076)" FT exon complement(21001308..21001350) FT /note="XPOUND prediction, score = 0.569" FT exon complement(21001142..21001148) FT /note="XPOUND prediction, score = 0.211" FT STS complement(20999164..20999289) FT /standard_name="WI-30115 (D10S2200), Map: 62.0, Homo FT sapiens" FT /note="GenBank Accession Number: G21800" FT repeat_region complement(20999130..20999153) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 95.8%, counts = 12" FT repeat_region complement(20999130..20999153) FT /note="AT repeat" FT exon complement(20999017..20999096) FT /note="MZEF prediction, score = 0.547" FT exon 20997678..20997696 FT /note="XPOUND prediction, score = 0.435" FT exon complement(20997024..20997048) FT /note="XPOUND prediction, score = 0.731" FT exon 20995700..20995728 FT /note="XPOUND prediction, score = 0.213" FT exon 20994785..20994813 FT /note="XPOUND prediction, score = 0.267" FT exon 20993376..20993412 FT /note="XPOUND prediction, score = 0.413" FT exon 20993252..20993327 FT /note="GENSCAN prediction, score = 3.07" FT /note="MZEF prediction, score = 0.859" FT repeat_region 20993123..20993162 FT /rpt_family="ALU" FT /note="97% identity: matches 993..1032 of consensus" FT repeat_region complement(20992805..20992959) FT /rpt_family="L1" FT /note="85% identity: matches 162..317 of consensus" FT repeat_region 20992687..20992957 FT /rpt_family="ALU" FT /note="85% identity: matches 9..274 of consensus" FT exon 20992715..20992775 FT /note="XPOUND prediction, score = 0.741" FT repeat_region 20991674..20991811 FT /rpt_family="ALU" FT /note="84% identity: matches 937..1074 of consensus" FT repeat_region complement(20991530..20991734) FT /rpt_family="L1" FT /note="82% identity: matches 389..596 of consensus" FT repeat_region 20991529..20991734 FT /rpt_family="ALU" FT /note="85% identity: matches 374..579 of consensus" FT exon 20990909..20990950 FT /note="XPOUND prediction, score = 0.218" FT exon 20990299..20990373 FT /note="XPOUND prediction, score = 0.706" FT exon 20990122..20990373 FT /note="GENSCAN prediction, score = 5.41" FT /note="MZEF prediction, score = 0.807" FT repeat_region complement(20989962..20989975) FT /note="GAACT repeat" FT repeat_region complement(20988518..20988556) FT /rpt_type=INVERTED FT /note="IR8, 94% complementary to IR8' (87886..87923)" FT repeat_region complement(20988475..20988512) FT /rpt_type=INVERTED FT /note="IR8', 94% complementary to IR8 (87842..87880)" FT exon 20988331..20988428 FT /note="GENSCAN prediction, score = 1.91" FT /note="MZEF prediction, score = 0.787" FT exon 20988238..20988259 FT /note="XPOUND prediction, score = 0.264" FT repeat_region complement(20987506..20987527) FT /rpt_type=INVERTED FT /note="IR9, 90% complementary to IR9' (90113..90134)" FT repeat_region complement(20987292..20987505) FT /rpt_family="L1" FT /note="85% identity: matches 162..374 of consensus" FT repeat_region 20987274..20987499 FT /rpt_family="ALU" FT /note="88% identity: matches 49..271 of consensus" FT exon 20986334..20986464 FT /note="XPOUND prediction, score = 0.641" FT exon 20986287..20986464 FT /note="GENSCAN prediction, score = 6.27" FT exon 20986287..20986389 FT /note="MZEF prediction, score = 0.975" FT repeat_region complement(20986264..20986285) FT /rpt_type=INVERTED FT /note="IR9', 90% complementary to IR9 (88871..88892)" FT repeat_region complement(20984813..20985100) FT /rpt_type=INVERTED FT /note="IR10, 80% complementary to IR10' (92824..93107)" FT repeat_region complement(20984819..20985099) FT /rpt_family="ALU" FT /note="83% identity: matches 1..277 of consensus" FT repeat_region 20984824..20985086 FT /rpt_family="L1" FT /note="80% identity: matches 167..424 of consensus" FT exon 20983973..20984140 FT /note="MZEF prediction, score = 0.887" FT repeat_region complement(20983291..20983574) FT /rpt_type=INVERTED FT /note="IR10', 80% complementary to IR10 (91298..91585)" FT repeat_region 20983299..20983569 FT /rpt_family="ALU" FT /note="90% identity: matches 156..426 of consensus" FT repeat_region complement(20983291..20983569) FT /rpt_family="L1" FT /note="85% identity: matches 245..526 of consensus" FT exon 20983297..20983412 FT /note="MZEF prediction, score = 0.713" FT exon 20982369..20982445 FT /note="XPOUND prediction, score = 0.646" FT exon 20982356..20982445 FT /note="GENSCAN prediction, score = 8.17" FT /note="MZEF prediction, score = 0.998" FT repeat_region complement(20982151..20982170) FT /note="TTTTG repeat" FT exon 20981934..20982013 FT /note="XPOUND prediction, score = 0.519" FT repeat_region complement(20979379..20979627) FT /rpt_family="ALU" FT /note="86% identity: matches 158..404 of consensus" FT repeat_region 20979377..20979623 FT /rpt_family="L1" FT /note="85% identity: matches 182..424 of consensus" FT exon 20978338..20978453 FT /note="GENSCAN prediction, score = 3.55" FT /note="MZEF prediction, score = 0.776" FT exon 20978338..20978445 FT /note="XPOUND prediction, score = 0.482" FT exon 20977438..20977447 FT /note="XPOUND prediction, score = 0.207" FT repeat_region complement(20977246..20977302) FT /rpt_family="THE" FT /note="92% identity: matches 88..142 of consensus" FT exon 20976868..20976875 FT /note="XPOUND prediction, score = 0.203" FT exon 20976635..20976654 FT /note="XPOUND prediction, score = 0.214" FT exon 20976419..20976547 FT /note="MZEF prediction, score = 0.886" FT exon 20975227..20975236 FT /note="XPOUND prediction, score = 0.211" FT repeat_region complement(20973735..20975165) FT /rpt_family="aga repeat" FT /rpt_type=TANDEM FT /note="homology = 52.1%, counts = 477" FT repeat_region complement(20973566..20973691) FT /rpt_family="cagcaaaaaggagaagaa repeat" FT /rpt_type=TANDEM FT /note="homology = 65.1%, counts = 7" FT repeat_region complement(20973212..20973499) FT /rpt_family="cagaaaaggagaaaagag repeat" FT /rpt_type=TANDEM FT /note="homology = 56.9%, counts = 16" FT repeat_region complement(20972480..20972699) FT /rpt_family="aaaaagaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 59.1%, counts = 20" FT repeat_region complement(20971462..20971627) FT /rpt_family="ALU" FT /note="86% identity: matches 503..666 of consensus" FT repeat_region 20971550..20971626 FT /rpt_family="L1" FT /note="90% identity: matches 746..822 of consensus" FT repeat_region 20971195..20971246 FT /rpt_family="L1" FT /note="96% identity: matches 396..447 of consensus" FT repeat_region complement(20969702..20969731) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 86.7%, counts = 15" FT repeat_region complement(20969711..20969723) FT /note="TA repeat" FT repeat_region 20968608..20968739 FT /rpt_family="L1" FT /note="85% identity: matches 464..598 of consensus" FT repeat_region complement(20968566..20968726) FT /rpt_family="ALU" FT /note="84% identity: matches 318..482 of consensus" FT repeat_region complement(20968482..20968643) FT /rpt_family="ALU" FT /note="92% identity: matches 79..240 of consensus" FT repeat_region 20968476..20968642 FT /rpt_family="L1" FT /note="87% identity: matches 178..344 of consensus" FT repeat_region complement(20968301..20968454) FT /rpt_family="aaaaataaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 64.3%, counts = 14" FT repeat_region complement(20967066..20967117) FT /rpt_family="L1" FT /note="90% identity: matches 1498..1549 of consensus" FT exon complement(20966251..20966359) FT /note="MZEF prediction, score = 0.607" FT repeat_region complement(20966262..20966332) FT /rpt_family="L1" FT /note="91% identity: matches 557..626 of consensus" FT repeat_region complement(20966038..20966048) FT /note="AT repeat" FT repeat_region complement(20965940..20966005) FT /rpt_family="L1" FT /note="86% identity: matches 880..945 of consensus" FT repeat_region complement(20965801..20965880) FT /rpt_family="L1" FT /note="86% identity: matches 479..558 of consensus" FT repeat_region complement(20964617..20964827) FT /rpt_type=INVERTED FT /note="IR11, 80% complementary to IR11' (112097..112310)" FT repeat_region complement(20964554..20964820) FT /rpt_family="ALU" FT /note="90% identity: matches 13..279 of consensus" FT repeat_region 20964554..20964818 FT /rpt_family="L1" FT /note="86% identity: matches 161..424 of consensus" FT exon 20964471..20964499 FT /note="XPOUND prediction, score = 0.766" FT repeat_region complement(20964404..20964416) FT /note="TAT repeat" FT repeat_region 20964329..20964392 FT /rpt_family="ALU" FT /note="93% identity: matches 218..280 of consensus" FT repeat_region 20964091..20964301 FT /rpt_family="ALU" FT /note="86% identity: matches 9..217 of consensus" FT repeat_region complement(20964088..20964301) FT /rpt_type=INVERTED FT /note="IR11', 80% complementary to IR11 (111571..111781)" FT repeat_region complement(20964098..20964293) FT /rpt_family="L1" FT /note="84% identity: matches 384..581 of consensus" FT exon 20964152..20964195 FT /note="XPOUND prediction, score = 0.448" FT exon complement(20963901..20963983) FT /note="MZEF prediction, score = 0.796" FT repeat_region complement(20962417..20962455) FT /note="TGTA repeat" FT repeat_region complement(20962400..20962455) FT /rpt_family="tgta repeat" FT /rpt_type=TANDEM FT /note="homology = 92.9%, counts = 14" FT repeat_region complement(20962392..20962409) FT /note="TA repeat" FT exon 20962278..20962320 FT /note="MZEF prediction, score = 0.851" FT repeat_region complement(20961210..20961221) FT /note="AG repeat" FT repeat_region complement(20961133..20961202) FT /rpt_family="gaggg repeat" FT /rpt_type=TANDEM FT /note="homology = 81.4%, counts = 14" FT repeat_region complement(20961154..20961168) FT /note="GGAGG repeat" FT repeat_region complement(20961132..20961150) FT /note="GGAGA repeat" FT repeat_region 20961061..20961096 FT /rpt_family="L1" FT /note="100% identity: matches 3996..4031 of consensus" FT repeat_region complement(20960788..20961061) FT /rpt_family="L1" FT /note="96% identity: matches 22..295 of consensus" FT repeat_region complement(20960598..20960721) FT /rpt_family="L1" FT /note="96% identity: matches 434..557 of consensus" FT exon 20960638..20960678 FT /note="XPOUND prediction, score = 0.251" FT repeat_region complement(20959723..20959800) FT /rpt_family="L1" FT /note="87% identity: matches 1808..1885 of consensus" FT repeat_region complement(20959458..20959564) FT /rpt_family="L1" FT /note="88% identity: matches 54..161 of consensus" FT repeat_region complement(20959405..20959474) FT /rpt_family="L1" FT /note="88% identity: matches 1323..1392 of consensus" FT repeat_region complement(20959249..20959311) FT /rpt_family="L1" FT /note="93% identity: matches 151..213 of consensus" FT repeat_region complement(20959202..20959220) FT /note="AAAC repeat" FT repeat_region complement(20959067..20959157) FT /rpt_family="L1" FT /note="84% identity: matches 194..284 of consensus" FT exon 20958843..20958870 FT /note="XPOUND prediction, score = 0.257" FT repeat_region complement(20958506..20958593) FT /rpt_family="L1" FT /note="89% identity: matches 6..94 of consensus" FT repeat_region complement(20958469..20958542) FT /rpt_family="L1" FT /note="90% identity: matches 5..78 of consensus" FT exon complement(20958063..20958109) FT /note="MZEF prediction, score = 0.757" FT exon 20957791..20957823 FT /note="XPOUND prediction, score = 0.284" FT repeat_region complement(20957718..20957782) FT /rpt_family="ALU" FT /note="92% identity: matches 1430..1494 of consensus" FT repeat_region 20957717..20957782 FT /rpt_family="L1" FT /note="87% identity: matches 497..562 of consensus" FT repeat_region complement(20957663..20957673) FT /note="AG repeat" FT repeat_region complement(20957637..20957654) FT /note="CTAT repeat" FT repeat_region 20957499..20957628 FT /rpt_family="L1" FT /note="86% identity: matches 168..297 of consensus" FT repeat_region complement(20957499..20957617) FT /rpt_family="ALU" FT /note="90% identity: matches 949..1067 of consensus" FT repeat_region complement(20957466..20957481) FT /note="AAAAG repeat" FT exon 20957108..20957149 FT /note="XPOUND prediction, score = 0.255" FT repeat_region complement(20956823..20956992) FT /rpt_family="ALU" FT /note="88% identity: matches 1..168 of consensus" FT repeat_region 20956840..20956981 FT /rpt_family="L1" FT /note="84% identity: matches 442..585 of consensus" FT exon 20956131..20956140 FT /note="XPOUND prediction, score = 0.426" FT exon complement(20953962..20954050) FT /note="MZEF prediction, score = 0.519" FT exon 20952984..20953068 FT /note="GENSCAN prediction, score = 1.57" FT exon complement(20952091..20952140) FT /note="MZEF prediction, score = 0.677" FT exon 20951818..20951933 FT /note="MZEF prediction, score = 0.846" FT exon 20950995..20951097 FT /note="MZEF prediction, score = 0.747" FT exon 20950792..20950832 FT /note="XPOUND prediction, score = 0.337" FT repeat_region complement(20950786..20950800) FT /note="TGAA repeat" FT exon 20949603..20949674 FT /note="MZEF prediction, score = 0.975" FT exon 20948850..20948927 FT /note="GENSCAN prediction, score = 5.73" FT repeat_region complement(20948252..20948264) FT /note="ATAA repeat" FT exon 20947187..20947238 FT /note="XPOUND prediction, score = 0.413" FT repeat_region complement(20947060..20947074) FT /note="AG repeat" FT exon 20946700..20946819 FT /note="GENSCAN prediction, score = 3.87" FT /note="MZEF prediction, score = 0.926" FT repeat_region complement(20946080..20946121) FT /note="ATGA repeat" FT repeat_region complement(20946074..20946121) FT /rpt_family="atga repeat" FT /rpt_type=TANDEM FT /note="homology = 95.8%, counts = 12" FT exon 20944705..20944773 FT /note="XPOUND prediction, score = 0.417" FT exon 20944626..20944773 FT /note="GENSCAN prediction, score = 10.32" FT exon 20944248..20944263 FT /note="XPOUND prediction, score = 0.480" FT exon 20943700..20943758 FT /note="GENSCAN prediction, score = 2.63" FT exon 20943397..20943415 FT /note="XPOUND prediction, score = 0.231" FT repeat_region complement(20941407..20941427) FT /rpt_type=INVERTED FT /note="IR12, 95% complementary to IR12' (134999..135019)" FT repeat_region complement(20941379..20941399) FT /rpt_type=INVERTED FT /note="IR12', 95% complementary to IR12 (134971..134991)" FT exon complement(20941305..20941307) FT /note="XPOUND prediction, score = 0.200" FT exon 20941174..20941247 FT /note="XPOUND prediction, score = 0.325" FT repeat_region complement(20940537..20940579) FT /rpt_family="ALU" FT /note="93% identity: matches 6..48 of consensus" FT repeat_region complement(20940284..20940457) FT /rpt_type=INVERTED FT /note="IR13, 81% complementary to IR13' (137232..137405)" FT repeat_region complement(20940315..20940427) FT /rpt_family="ALU" FT /note="85% identity: matches 159..270 of consensus" FT exon 20940308..20940417 FT /note="MZEF prediction, score = 0.903" FT repeat_region complement(20939998..20940060) FT /rpt_family="L1" FT /note="95% identity: matches 21..83 of consensus" FT repeat_region complement(20939765..20939997) FT /rpt_family="L1" FT /note="94% identity: matches 1152..1384 of consensus" FT repeat_region complement(20939611..20939762) FT /rpt_family="ataaaaattaaaaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 71.1%, counts = 8" FT repeat_region complement(20939691..20939704) FT /note="AAAAT repeat" FT exon complement(20939668..20939689) FT /note="MZEF prediction, score = 0.584" FT repeat_region complement(20938993..20939166) FT /rpt_type=INVERTED FT /note="IR13', 81% complementary to IR13 (135941..136114)" FT repeat_region 20939000..20939142 FT /rpt_family="ALU" FT /note="94% identity: matches 105..247 of consensus" FT repeat_region complement(20939000..20939142) FT /rpt_family="L1" FT /note="89% identity: matches 251..393 of consensus" FT repeat_region complement(20938955..20939002) FT /rpt_family="tttatt repeat" FT /rpt_type=TANDEM FT /note="homology = 77.1%, counts = 8" FT exon complement(20938774..20938810) FT /note="XPOUND prediction, score = 0.310" FT repeat_region complement(20938724..20938740) FT /note="TTTCT repeat" FT repeat_region 20938615..20938719 FT /rpt_family="L1" FT /note="92% identity: matches 2319..2423 of consensus" FT repeat_region 20936680..20938563 FT /rpt_family="L1" FT /note="94% identity: matches 74..1967 of consensus" FT exon 20936717..20938089 FT /note="GENSCAN prediction, score = 19.21" FT exon 20936683..20937156 FT /note="MZEF prediction, score = 0.521" FT repeat_region complement(20936546..20936675) FT /rpt_type=INVERTED FT /note="IR14, 86% complementary to IR14' (140701..140831)" FT repeat_region complement(20936546..20936671) FT /rpt_family="L1" FT /note="90% identity: matches 401..526 of consensus" FT repeat_region 20936545..20936671 FT /rpt_family="ALU" FT /note="92% identity: matches 412..538 of consensus" FT exon complement(20936636..20936643) FT /note="XPOUND prediction, score = 0.237" FT exon complement(20936627..20936632) FT /note="XPOUND prediction, score = 0.207" FT exon 20936452..20936479 FT /note="XPOUND prediction, score = 0.244" FT repeat_region complement(20935567..20935697) FT /rpt_type=INVERTED FT /note="IR14', 86% complementary to IR14 (139723..139852)" FT repeat_region complement(20935431..20935687) FT /rpt_family="ALU" FT /note="87% identity: matches 11..267 of consensus" FT repeat_region 20935464..20935683 FT /rpt_family="L1" FT /note="86% identity: matches 207..424 of consensus" FT repeat_region complement(20935399..20935418) FT /note="TAAA repeat" FT repeat_region 20934895..20935136 FT /rpt_family="L1" FT /note="87% identity: matches 2670..2915 of consensus" FT repeat_region 20934754..20934847 FT /rpt_family="L1" FT /note="88% identity: matches 1404..1497 of consensus" FT exon 20934822..20934838 FT /note="XPOUND prediction, score = 0.267" FT exon 20934755..20934797 FT /note="XPOUND prediction, score = 0.359" FT exon 20934743..20934751 FT /note="XPOUND prediction, score = 0.242" FT repeat_region complement(20934551..20934724) FT /rpt_family="L1" FT /note="90% identity: matches 1780..1953 of consensus" FT repeat_region complement(20934096..20934440) FT /rpt_family="L1" FT /note="84% identity: matches 4715..5045 of consensus" FT repeat_region complement(20934004..20934189) FT /rpt_family="L1" FT /note="86% identity: matches 13..197 of consensus" FT repeat_region complement(20933887..20933969) FT /rpt_family="L1" FT /note="91% identity: matches 361..443 of consensus" FT repeat_region complement(20933611..20933872) FT /rpt_family="L1" FT /note="85% identity: matches 466..728 of consensus" FT repeat_region complement(20933560..20933589) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 15" FT repeat_region complement(20933560..20933587) FT /note="AC repeat" FT repeat_region complement(20933371..20933556) FT /rpt_family="L1" FT /note="87% identity: matches 759..943 of consensus" FT repeat_region complement(20933251..20933315) FT /rpt_family="L1" FT /note="93% identity: matches 821..885 of consensus" FT repeat_region complement(20933222..20933269) FT /rpt_family="L1" FT /note="97% identity: matches 13..60 of consensus" FT exon 20933132..20933163 FT /note="XPOUND prediction, score = 0.596" FT exon 20933055..20933085 FT /note="XPOUND prediction, score = 0.212" FT exon 20931869..20931878 FT /note="XPOUND prediction, score = 0.227" FT repeat_region complement(20931760..20931870) FT /rpt_family="L1" FT /note="84% identity: matches 187..297 of consensus" FT repeat_region 20931759..20931870 FT /rpt_family="ALU" FT /note="89% identity: matches 141..252 of consensus" FT exon 20931840..20931862 FT /note="XPOUND prediction, score = 0.315" FT repeat_region 20931686..20931753 FT /rpt_family="ALU" FT /note="86% identity: matches 23..90 of consensus" FT exon 20930752..20930754 FT /note="XPOUND prediction, score = 0.213" FT exon 20930356..20930371 FT /note="XPOUND prediction, score = 0.236" FT exon 20929866..20929898 FT /note="XPOUND prediction, score = 0.623" FT exon 20929357..20929595 FT /note="GENSCAN prediction, score = 19.19" FT /note="MZEF prediction, score = 0.743" FT repeat_region complement(20928989..20929028) FT /rpt_family="aaaaaaac repeat" FT /rpt_type=TANDEM FT /note="homology = 87.5%, counts = 5" FT repeat_region complement(20927021..20927037) FT /note="TA repeat" FT repeat_region complement(20926970..20927037) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 77.9%, counts = 34" FT repeat_region complement(20926884..20926895) FT /note="GT repeat" FT repeat_region 20926501..20926768 FT /rpt_family="ALU" FT /note="89% identity: matches 1..268 of consensus" FT repeat_region complement(20926515..20926749) FT /rpt_family="L1" FT /note="83% identity: matches 193..424 of consensus" FT exon 20926300..20926416 FT /note="GENSCAN prediction, score = 3.74" FT exon 20923748..20923767 FT /note="XPOUND prediction, score = 0.222" FT exon 20923659..20923767 FT /note="GENSCAN prediction, score = 9.97" FT /note="MZEF prediction, score = 0.992" FT exon 20922768..20922775 FT /note="XPOUND prediction, score = 0.216" FT exon complement(20922000..20922047) FT /note="MZEF prediction, score = 0.990" FT exon 20921568..20921581 FT /note="XPOUND prediction, score = 0.311" FT repeat_region complement(20920957..20921020) FT /rpt_family="ttttttta repeat" FT /rpt_type=TANDEM FT /note="homology = 79.7%, counts = 8" FT repeat_region complement(20920978..20921001) FT /note="ATTT repeat" FT repeat_region 20920837..20920957 FT /rpt_family="L1" FT /note="98% identity: matches 409..529 of consensus" FT exon complement(20920874..20920902) FT /note="XPOUND prediction, score = 0.425" FT repeat_region 20919074..20920799 FT /rpt_family="L1" FT /note="95% identity: matches 241..1969 of consensus" FT exon 20919192..20920315 FT /note="GENSCAN prediction, score = 29.63" FT exon 20919241..20919392 FT /note="MZEF prediction, score = 0.776" FT exon complement(20919042..20919057) FT /note="XPOUND prediction, score = 0.779" FT exon complement(20918878..20919012) FT /note="MZEF prediction, score = 0.784" FT repeat_region 20918441..20918722 FT /rpt_family="ALU" FT /note="96% identity: matches 1..281 of consensus" FT repeat_region complement(20918441..20918722) FT /rpt_family="L1" FT /note="89% identity: matches 245..526 of consensus" FT misc_feature complement(20918444..20918596) FT /note="CpG_island (%GC=58.2, o/e=1.15, #CpGs=15)" FT exon complement(20917309..20917346) FT /note="MZEF prediction, score = 0.833" FT /note="XPOUND prediction, score = 0.443" FT misc_feature complement(21006401..21168464) FT /note="annotated region of clone" FT misc_feature complement(21168464) FT /note="Clone_right_end: RP11-113D19" FT mRNA complement(21165636..21166659) FT /gene="IFNA21" FT /locus_tag="RP11-113D19.8-001" FT /product="interferon, alpha 21" FT /note="match: cDNAs: Em:E00048.1 Em:M12350.1 Em:M28586.1 FT Em:V00540.1 Em:X00145.1" FT CDS complement(21166042..21166611) FT /gene="IFNA21" FT /locus_tag="RP11-113D19.8-001" FT /standard_name="OTTHUMP00000021132" FT /product="interferon, alpha 21" FT /note="match: proteins: Sw:P01568" FT /protein_id="CAH70157.1" FT /translation="MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMG FT RISPFSCLKDRHDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSL FT LEKFSTELNQQLNDLEACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCA FT WEVVRAEIMRSFSLSKIFQERLRRKE" FT mRNA complement(21140213..21142144) FT /gene="IFNW1" FT /locus_tag="RP11-113D19.4-001" FT /product="interferon, omega 1" FT /note="match: cDNAs: Em:X02669.1" FT CDS complement(21140982..21141569) FT /gene="IFNW1" FT /locus_tag="RP11-113D19.4-001" FT /standard_name="OTTHUMP00000021133" FT /product="interferon, omega 1" FT /note="match: proteins: Sw:P05000" FT /protein_id="CAH70158.1" FT /translation="MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMR FT RISPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTL FT LDQLHTGLHQQLQHLETCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCA FT WEVVRMEIMKSLFLSTNMQERLRSKDRDLGSS" FT CDS 21106404..21106908 FT /pseudo FT /locus_tag="RP11-113D19.3-001" FT /product="interferon, omega 1 (IFNW1) pseudogene" FT /note="match: proteins: Sw:P05002 Sw:P07352 Sw:P37290 FT Tr:P28170 Tr:Q13168" FT mRNA complement(21077104..21077962) FT /gene="IFNB1" FT /locus_tag="RP11-113D19.1-002" FT /product="interferon, beta 1, fibroblast" FT /note="match: cDNAs: Em:E00017.1 Em:E00098.1 Em:E00171.1 FT Em:M17373.1 Em:M25460.1 Em:M28622.1 Em:V00546.1 FT Em:V00547.1" FT CDS complement(21077305..21077868) FT /gene="IFNB1" FT /locus_tag="RP11-113D19.1-002" FT /standard_name="OTTHUMP00000021131" FT /product="interferon, beta 1, fibroblast" FT /note="match: proteins: Sw:O77812 Sw:P01574" FT /protein_id="CAH70160.1" FT /translation="MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQL FT NGRLEYCLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETI FT VENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCA FT WTIVRVEILRNFYFINRLTGYLRN" FT polyA_signal complement(21077125..21077130) FT polyA_site complement(21077103) FT CDS complement(21058770..21059322) FT /pseudo FT /locus_tag="RP11-113D19.6-001" FT /product="interferon, beta 1, fibroblast (IFNB1) FT pseudogene" FT /note="match: proteins: Sw:P01574" FT mRNA join(complement(21031552..21031635), FT complement(21029294..21029397), FT complement(21026595..21026722), FT complement(21015897..21016009), FT complement(21011588..21011694), FT complement(21008020..21008145), FT complement(21006401..21007118),AL662879.5:69998..72778) FT /gene="PTPLAD2" FT /locus_tag="RP11-113D19.2-003" FT /product="protein tyrosine phosphatase-like A domain FT containing 2" FT /note="match: cDNAs: Em:BX538052.1 Em:BX648779.1" FT mRNA complement(join(21006710..21007118,21008020..21008145, FT 21011588..21011694,21015897..21016009,21026595..21026722, FT 21029294..21029397,21031552..21031619)) FT /gene="PTPLAD2" FT /locus_tag="RP11-113D19.2-001" FT /product="protein tyrosine phosphatase-like A domain FT containing 2" FT /note="match: ESTs: Em:AI798761.1 Em:AI804932.1 FT Em:AV617444.1 Em:BB633666.1 Em:BE720668.1 Em:BE809126.1 FT Em:BF142447.1 Em:BG214382.1 Em:BI818362.1" FT /note="match: cDNAs: Em:AK016968.1 Em:AK017257.1 FT Em:BC020155.1" FT CDS complement(join(21007036..21007118,21008020..21008145, FT 21011588..21011694,21015897..21016009,21026595..21026722, FT 21029294..21029397,21031552..21031589)) FT /gene="PTPLAD2" FT /locus_tag="RP11-113D19.2-001" FT /standard_name="OTTHUMP00000022748" FT /product="protein tyrosine phosphatase-like A domain FT containing 2" FT /note="match: proteins: Tr:Q9CPS2" FT /protein_id="CAH70162.1" FT /translation="MGPLALPAWLQPRYRKNAYLFIYYLIQFCGHSWIFTNMTVRFFSF FT GKDSMVDTFYAIGLVMRLCQSVSLLELLHIYVGIESNHLLPRFLQLTERIIILFVVITS FT QEEVQEKYVVCVLFVFWNLLDMVRYTYSMLSVIGISYAVLTWLSQTLWMPIYPLCVLAE FT AFAIYQSLPYFESFGTYSTKLPFDLSIYFPYVLKIYLMMLFIGMYFTYSHLYSERRDIL FT GIFPIKKKKM" FT mRNA complement(join(21015136..21016009,21017808..21017909, FT 21026595..21026744)) FT /gene="PTPLAD2" FT /locus_tag="RP11-113D19.2-002" FT /product="protein tyrosine phosphatase-like A domain FT containing 2" FT /note="match: ESTs: Em:AA250867.1 Em:AA250868.1 FT Em:AA251417.1 Em:AA251418.1 Em:AA687316.1 Em:AA721621.1 FT Em:AA743230.1 Em:AA765816.1 Em:AW296978.1 Em:AW966935.1 FT Em:AW966940.1 Em:AW967552.1 Em:AW971547.1" FT polyA_signal complement(21015153..21015158) FT polyA_site complement(21015136) FT misc_feature complement(21011794..21011805) FT /note="Sequence confirmed by AC009445 sequenced by WIBR" FT polyA_signal complement(21006703..21006708) FT polyA_site complement(21006690) FT misc_feature complement(21006401) FT /note="Clone_left_end: RP11-113D19" FT misc_feature 21168465..21222771 FT /note="annotated region of clone" FT CDS complement(21178594..21179187) FT /pseudo FT /locus_tag="RP11-1P8.1-001" FT /product="interferon, omega 1 (IFNW1) pseudogene" FT /note="match: proteins: Sw:P05000 Sw:P05001 Sw:P05002 FT Tr:P28170 Tr:Q13168 Tr:Q28844 Tr:Q95J78" FT mRNA complement(21186693..21187670) FT /gene="IFNA4" FT /locus_tag="RP11-1P8.4-001" FT /product="interferon, alpha 4" FT /note="match: cDNAs: Em:A02076.1 Em:M27318.1" FT CDS complement(21186961..21187530) FT /gene="IFNA4" FT /locus_tag="RP11-1P8.4-001" FT /standard_name="OTTHUMP00000021135" FT /product="interferon, alpha 4" FT /note="match: proteins: Sw:P05014" FT /protein_id="CAH71188.1" FT /translation="MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMG FT RISHFSCLKDRHDFGFPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSL FT LEKFSTELYQQLNDLEACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCA FT WEVVRAEIMRSLSFSTNLQKRLRRKD" FT CDS complement(21190653..21191243) FT /pseudo FT /locus_tag="RP11-1P8.5-001" FT /product="interferon, omega 1 (IFNW1) pseudogene" FT /note="match: proteins: Sw:P05000 Sw:P07352 Tr:Q13168 FT Tr:Q28843 Tr:Q28845 Tr:Q28847" FT mRNA complement(21201468..21202204) FT /gene="IFNA7" FT /locus_tag="RP11-1P8.8-001" FT /product="interferon, alpha 7" FT /note="match: cDNAs: Em:M34913.1" FT CDS complement(21201595..21202164) FT /gene="IFNA7" FT /locus_tag="RP11-1P8.8-001" FT /standard_name="OTTHUMP00000021136" FT /product="interferon, alpha 7" FT /note="match: proteins: Sw:P01567" FT /protein_id="CAH71190.1" FT /translation="MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMG FT RISPFSCLKDRHEFRFPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSL FT LEKFSTELYQQLNDLEACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCA FT WEVVRAEIMRSFSFSTNLKKGLRRKD" FT mRNA complement(21206180..21207142) FT /gene="IFNA10" FT /locus_tag="RP11-1P8.9-001" FT /product="interferon, alpha 10" FT /note="match: cDNAs: Em:E00045.1 Em:V00551.1" FT CDS complement(21206527..21207096) FT /gene="IFNA10" FT /locus_tag="RP11-1P8.9-001" FT /standard_name="OTTHUMP00000021134" FT /product="interferon, alpha 10" FT /note="match: proteins: Sw:P01566" FT /protein_id="CAH71191.1" FT /translation="MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMG FT RISPFSCLKDRHDFRIPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSL FT LEKFSTELYQQLNDLEACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCA FT WEVVRAEIMRSLSFSTNLQKRLRRKD" FT CDS complement(21209188..21209778) FT /pseudo FT /locus_tag="RP11-1P8.7-001" FT /product="interferon, omega 1 (IFNW1) pseudogene" FT /note="match: proteins: Sw:P05000 Sw:P07352 Tr:Q13168 FT Tr:Q28844 Tr:Q28847" FT mRNA complement(21216372..21217310) FT /gene="IFNA16" FT /locus_tag="RP11-1P8.12-001" FT /product="interferon, alpha 16" FT /note="match: cDNAs: Em:M28585.1" FT CDS complement(21216735..21217304) FT /gene="IFNA16" FT /locus_tag="RP11-1P8.12-001" FT /standard_name="OTTHUMP00000021137" FT /product="interferon, alpha 16" FT /note="match: proteins: Sw:P05015" FT /protein_id="CAH71193.1" FT /translation="MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMG FT RISHFSCLKDRYDFGFPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETL FT LDKFYIELFQQLNDLEACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCA FT WEVVRAEIMRSFSFSTNLQKGLRRKD" FT misc_feature 21218772 FT /note="Clone_left_end: RP11-380P16" FT misc_feature 21222772..21345262 FT /note="annotated region of clone" FT misc_feature 21224943 FT /note="Clone_right_end: RP11-1P8" FT mRNA complement(21227242..21228221) FT /gene="IFNA17" FT /locus_tag="RP11-380P16.10-001" FT /product="interferon, alpha 17" FT /note="match: cDNAs: Em:M11026.1 Em:M38289.1" FT CDS complement(21227603..21228172) FT /gene="IFNA17" FT /locus_tag="RP11-380P16.10-001" FT /standard_name="OTTHUMP00000021140" FT /product="interferon, alpha 17" FT /note="match: proteins: Sw:P01571" FT /protein_id="CAH73185.1" FT /translation="MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMG FT RISPFSCLKDRHDFGLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSL FT LEKFSTELYQQLNNLEACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCA FT WEVVRAEIMRSLSFSTNLQKILRRKD" FT CDS complement(21231265..21231852) FT /pseudo FT /locus_tag="RP11-380P16.2-001" FT /product="interferon, omega 1 (IFNW1) pseudogene" FT /note="match: proteins: Sw:P05000 Tr:Q28843 Tr:Q28845" FT mRNA complement(21239001..21239990) FT /gene="IFNA14" FT /locus_tag="RP11-380P16.9-001" FT /product="interferon, alpha 14" FT /note="match: cDNAs: Em:E00050.1 Em:V00542.1" FT CDS complement(21239365..21239934) FT /gene="IFNA14" FT /locus_tag="RP11-380P16.9-001" FT /standard_name="OTTHUMP00000021139" FT /product="interferon, alpha 14" FT /note="match: proteins: Sw:P01570" FT /protein_id="CAH73187.1" FT /translation="MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMR FT RISPFSCLKDRHDFEFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETL FT LEKFYIELFQQMNDLEACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCA FT WEVVRAEIMRSLSFSTNLQKRLRRKD" FT CDS complement(21278054..21278618) FT /pseudo FT /locus_tag="RP11-380P16.4-001" FT /product="interferon pseudogene" FT /note="match: proteins: Sw:P01566 Sw:P01569 Sw:P01571 FT Sw:P05003 Sw:P05014 Sw:P05015 Sw:P49879 Tr:Q14608 Tr:Q14618 FT Tr:Q8MIL4" FT mRNA complement(21304325..21305311) FT /gene="IFNA5" FT /locus_tag="RP11-380P16.5-001" FT /product="interferon, alpha 5" FT /note="match: cDNAs: Em:E00049.1 Em:E00124.1 Em:V00541.1" FT CDS complement(21304686..21305255) FT /gene="IFNA5" FT /locus_tag="RP11-380P16.5-001" FT /standard_name="OTTHUMP00000021138" FT /product="interferon, alpha 5" FT /note="match: proteins: Sw:P01569" FT /protein_id="CAH73189.1" FT /translation="MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMG FT RISPFSCLKDRHDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETL FT LDKFYTELYQQLNDLEACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCA FT WEVVRAEIMRSFSLSANLQERLRRKE" FT CDS 21321299..21321826 FT /pseudo FT /locus_tag="RP11-380P16.7-001" FT /product="interferon pseudogene" FT /note="match: proteins: Sw:P01562 Sw:P01562 Sw:P01563 FT Sw:P01568 Sw:P01569 Sw:P32881 Tr:Q14608 Tr:Q8R5J5 FT Tr:Q95J78" FT polyA_site complement(21329670) FT mRNA complement(21329670..21335379) FT /gene="KLHL9" FT /locus_tag="RP11-380P16.6-001" FT /product="kelch-like 9 (Drosophila)" FT /note="match: cDNAs: Em:AB037775.1 Em:AK023630.1 FT Em:AK025468.1 Em:AK091715.1 Em:AL713669.1 Em:BC052776.1" FT polyA_signal complement(21329685..21329690) FT CDS complement(21333005..21334858) FT /gene="KLHL9" FT /locus_tag="RP11-380P16.6-001" FT /standard_name="OTTHUMP00000021141" FT /product="kelch-like 9 (Drosophila)" FT /note="match: proteins: Sw:Q9P2J3 Tr:Q9H8J3" FT /protein_id="CAH73191.1" FT /translation="MKVSLGNGEMGVSAHLQPCKAGTTRFFTSNTHSSVVLQGFDQLRI FT EGLLCDVTLVPGDGDEIFPVHRAMMASASDYFKAMFTGGMKEQDLMCIKLHGVNKVGLK FT KIIDFIYTAKLSLNMDNLQDTLEAASFLQILPVLDFCKVFLISGVSLDNCVEVGRIANT FT YNLIEVDKYVNNFILKNFPALLSTGEFLKLPFERLAFVLSSNSLKHCTELELFKAACRW FT LRLEDPRMDYAAKLMKNIRFPLMTPQDLINYVQTVDFMRTDNTCVNLLLEASNYQMMPY FT MQPVMQSDRTAIRSDSTHLVTLGGVLRQQLVVSKELRMYDERAQEWRSLAPMDAPRYQH FT GIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKG FT HLYAVGGRSAAGELATVECYNPRMNEWSYVAKMSEPHYGHAGTVYGGLMYISGGITHDT FT FQNELMCFDPDTDKWMQKAPMTTVRGLHCMCTVGDKLYVIGGNHFRGTSDYDDVLSCEY FT YSPTLDQWTPIAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPEKDEWHK FT VFDLPESLGGIRACTLTVFPPEENPGSPSRESPLSAPSDHS" FT misc_feature 21341263 FT /note="Clone_left_end: RP11-354P17" FT misc_feature 21345263..21516473 FT /note="annotated region of clone" FT mRNA complement(21349834..21351377) FT /gene="IFNA6" FT /locus_tag="RP11-354P17.7-001" FT /product="interferon, alpha 6" FT CDS complement(21350317..21350886) FT /gene="IFNA6" FT /locus_tag="RP11-354P17.7-001" FT /standard_name="OTTHUMP00000021145" FT /product="interferon, alpha 6" FT /note="match: proteins: Sw:P05013" FT /protein_id="CAH72903.1" FT /translation="MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMR FT RISLFSCLKDRHDFRFPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERL FT LDKLYTELYQQLNDLEACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCA FT WEVVRAEIMRSFSSSRNLQERLRRKE" FT mRNA complement(21367423..21368961) FT /gene="IFNA13" FT /locus_tag="RP11-354P17.13-001" FT /product="interferon, alpha 13" FT CDS complement(21367437..21368006) FT /gene="IFNA13" FT /locus_tag="RP11-354P17.13-001" FT /standard_name="OTTHUMP00000021144" FT /product="interferon, alpha 13" FT /note="match: proteins: Sw:P01562 Sw:P01562" FT /protein_id="CAH72904.1" FT /translation="MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMS FT RISPSSCLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDL FT LDKFCTELYQQLNDLEACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCA FT WEVVRAEIMRSLSLSTNLQERLRRKE" FT mRNA complement(21384253..21385387) FT /gene="IFNA2" FT /locus_tag="RP11-354P17.2-001" FT /product="interferon, alpha 2" FT /note="match: cDNAs: Em:E00099.1 Em:E00172.1 Em:M54886.1 FT Em:V00544.1" FT CDS complement(21384762..21385328) FT /gene="IFNA2" FT /locus_tag="RP11-354P17.2-001" FT /standard_name="OTTHUMP00000021143" FT /product="interferon, alpha 2" FT /note="match: proteins: Sw:P01563" FT /protein_id="CAH72906.1" FT /translation="MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMR FT RISLFSCLKDRHDFGFPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLL FT DKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAW FT EVVRAEIMRSFSLSTNLQESLRSKE" FT mRNA complement(join(21455641..21455943,21476898..21477034, FT 21477168..21477291,AL137022.8:43115..43295)) FT /locus_tag="RP11-354P17.9-001" FT /product="novel transcript" FT /note="match: ESTs: Em:AA437329.1 Em:BM724735.1" FT CDS complement(21398613..21399138) FT /pseudo FT /locus_tag="RP11-354P17.10-001" FT /product="interferon pseudogene" FT /note="match: proteins: Sw:P01566 Sw:P01569 Sw:P05015 FT Tr:Q14618 Tr:Q8R5J7 Tr:Q8VHY9 Tr:Q8VHZ0 Tr:Q8VHZ1 Tr:Q91WX3 FT Tr:Q99N22 Tr:Q9ES91" FT CDS 21403080..21403650 FT /pseudo FT /locus_tag="RP11-354P17.6-001" FT /product="interferon alpha pseudogene" FT /note="match: proteins: Sw:P01566 Sw:P01567 Sw:P01568 FT Sw:P01569 Sw:P01571 Sw:P05004 Sw:P05014 Sw:P05015 Sw:P07348 FT Tr:Q14618" FT misc_feature 21405417 FT /note="Clone_right_end: RP11-380P16" FT mRNA 21409146..21410184 FT /gene="IFNA8" FT /locus_tag="RP11-354P17.14-001" FT /product="interferon, alpha 8" FT /note="match: cDNAs: Em:E00101.1 Em:E00174.1 Em:K01900.1" FT CDS 21409176..21409745 FT /gene="IFNA8" FT /locus_tag="RP11-354P17.14-001" FT /standard_name="OTTHUMP00000021146" FT /product="interferon, alpha 8" FT /note="match: proteins: Sw:P32881" FT /protein_id="CAH72909.1" FT /translation="MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMR FT RISPFSCLKDRHDFEFPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETL FT LDEFYIELDQQLNDLESCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCA FT WEVVRAEIMRSFSLSINLQKRLKSKE" FT CDS 21420233..21420812 FT /pseudo FT /locus_tag="RP11-354P17.12-001" FT /product="interferon, omega 1 (IFNW1) pseudogene" FT /note="match: proteins: Sw:P01563 Sw:P05000 Sw:P07352 FT Sw:P32881 Tr:P28170 Tr:Q13168 Tr:Q28843 Tr:Q28844" FT mRNA 21440453..21441315 FT /gene="IFNA1" FT /locus_tag="RP11-354P17.1-001" FT /product="interferon, alpha 1" FT /note="match: cDNAs: Em:E00046.1 Em:V00537.1 Em:V00538.1" FT CDS 21440507..21441076 FT /gene="IFNA1" FT /locus_tag="RP11-354P17.1-001" FT /standard_name="OTTHUMP00000021142" FT /product="interferon, alpha 1" FT /note="match: proteins: Sw:P01562 Sw:P01562" FT /protein_id="CAH72911.1" FT /translation="MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMS FT RISPSSCLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDL FT LDKFCTELYQQLNDLEACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCA FT WEVVRAEIMRSLSLSTNLQERLRRKE" FT CDS 21455483..21456044 FT /pseudo FT /locus_tag="RP11-354P17.8-001" FT /product="interferon pseudogene" FT /note="match: proteins: Sw:P01563 Sw:P01566 Sw:P01568 FT Sw:P01569 Sw:P01570 Sw:P05000 Sw:P05013 Sw:P32881 Tr:Q13168 FT Tr:Q29098 Tr:Q8MJT1 Tr:Q8R5K9 Tr:Q95J77 Tr:Q95J78" FT CDS complement(21481105..21481693) FT /pseudo FT /locus_tag="RP11-354P17.11-001" FT /product="interferon pseudogene" FT /note="match: proteins: Sw:P01562 Sw:P01563 Sw:P49877 FT Sw:P49879 Sw:P56831 Sw:Q08071 Tr:Q29084 Tr:Q61718 Tr:Q8R5J7 FT Tr:Q8R5K9 Tr:Q8VHY9 Tr:Q8VHZ0 Tr:Q8VHZ1 Tr:Q9ES91" FT misc_feature 21514374 FT /note="Clone_left_end: RP11-344A7" FT misc_feature 21516474..21686227 FT /note="annotated region of clone" FT misc_feature 21536279 FT /note="Clone_right_end: RP11-354P17" FT mRNA complement(join(AL353732.14:112379..112681, FT AL353732.14:133636..133772,AL353732.14:133906..134029, FT 21559488..21559668)) FT /locus_tag="RP11-354P17.9-001" FT /product="novel transcript" FT /note="match: ESTs: Em:AA437329.1 Em:BM724735.1" FT CDS 21638344..21638648 FT /pseudo FT /locus_tag="RP11-344A7.1-001" FT /product="histone H3 pseudogene" FT /note="match: proteins: Sw:P02301 Sw:P08437 Sw:P08903 FT Sw:P10651 Sw:P15512 Sw:P22843 Sw:P40285 Sw:P41353 Sw:P50564 FT Sw:P68428 Sw:P69150 Sw:P69248 Sw:P84232 Sw:P84247 Sw:Q10453 FT Tr:O15819 Tr:O44009 Tr:P90540 Tr:Q27822 Tr:Q27880 FT Tr:Q95047" FT misc_feature 21686127 FT /note="Clone_right_end: RP11-344A7" FT misc_feature 21686228..21744602 FT /note="annotated region of clone" FT CDS 21695175..21696948 FT /pseudo FT /locus_tag="RP11-473O3.1-001" FT /product="pseudogene similar to part of KH-type splicing FT regulatory protein (FUSE binding protein 2) KHSRP" FT /note="match: proteins: Sw:Q8UVD9 Sw:Q91WJ8 Sw:Q92945 FT Sw:Q92945 Sw:Q96AE4 Sw:Q96AE4 Sw:Q99PF5" FT misc_feature 21740603 FT /note="Clone_left_end: RP11-70L8" FT misc_feature 21744603..21911258 FT /note="annotated region of clone" FT mRNA join(21802635..21802780,21815432..21815518, FT 21816713..21816771,21818034..21818201, FT AL354709.15:21019..21180,AL354709.15:24260..24572) FT /gene="MTAP" FT /locus_tag="RP11-145E5.1-002" FT /product="methylthioadenosine phosphorylase" FT /note="match: cDNAs: Em:AF109294.1" FT mRNA join(21802635..21802780,21815432..21815518, FT 21816713..21816771,21818034..21818201,21837907..21838009, FT 21854630..21854869,21859302..21859424,21861975..21867077) FT /gene="MTAP" FT /locus_tag="RP11-145E5.1-001" FT /product="methylthioadenosine phosphorylase" FT /note="match: ESTs: Em:AA488519.1 Em:AI090612.1 FT Em:AL048242.1 Em:AL543068.1 Em:AL709663.1 Em:BE548216.1 FT Em:BF102707.1 Em:BF572791.1 Em:BF669154.1 Em:BF669783.1 FT Em:BF697694.1 Em:BF699014.1 Em:BF792159.1 Em:BG498034.1 FT Em:BG501032.1 Em:BG574734.1 Em:BG576334.1 Em:BG611102.1 FT Em:BG674546.1 Em:BG678499.1 Em:BG704891.1 Em:BG940893.1 FT Em:BI909703.1 Em:BM014199.1 Em:BM459757.1 Em:BM472824.1 FT Em:BM925551.1 Em:BM994282.1 Em:BQ220538.1 Em:BQ232183.1 FT Em:BQ694691.1" FT /note="match: cDNAs: Em:AB062485.1 Em:AK024734.1 FT Em:BC012316.1 Em:BC026106.1 Em:BC032739.1 Em:U22233.1" FT mRNA join(21802656..21802780,21815432..21815543, FT 21816713..21816771,21818034..21818201,21837907..21838009, FT 21854630..21854869,21859302..21859424,21861975..21863285) FT /gene="MTAP" FT /locus_tag="RP11-145E5.1-006" FT /product="methylthioadenosine phosphorylase" FT /note="match: cDNAs: Em:CR925956.1" FT mRNA join(21802663..21802949,21815432..21815518, FT 21816713..21816771,21818034..21818201,21837907..21838000) FT /gene="MTAP" FT /locus_tag="RP11-145E5.1-003" FT /product="methylthioadenosine phosphorylase" FT /note="match: ESTs: Em:BF663824.1" FT CDS join(21802748..21802780,21815432..21815518, FT 21816713..21816771,21818034..21818201,21837907..21838009, FT 21854630..21854869,21859302..21859424,21861975..21862013) FT /gene="MTAP" FT /locus_tag="RP11-145E5.1-001" FT /standard_name="OTTHUMP00000021152" FT /product="methylthioadenosine phosphorylase" FT /note="match: proteins: Sw:Q13126" FT /protein_id="CAI16481.1" FT /translation="MASGTTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDAL FT ILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQP FT GDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRC FT HSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYD FT CWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLKNMAQFSVLLP FT RH" FT mRNA join(21803282..21803380,21808806..21808999, FT 21813765..21813885) FT /locus_tag="RP11-70L8.3-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:AW501159.1" FT CDS complement(21811620..21812346) FT /pseudo FT /locus_tag="RP11-70L8.1-001" FT /product="pseudogene similar to part of beta tubulin" FT /note="match: proteins: Sw:P02554 Sw:P08841 Sw:P11833 FT Sw:P30883 Sw:P68371 Sw:P68372 Sw:Q9NFZ7 Tr:O18342 Tr:P92124 FT Tr:Q26165 Tr:Q8NJ82 Tr:Q9P334 Tr:Q9P8Y7 Tr:Q9Y1A4" FT misc_feature 21814333 FT /note="Clone_right_end: RP11-473O3" FT misc_feature 21839001..21839018 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 21839251..21839320 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT mRNA join(21859322..21859424,21861766..21861816, FT 21861975..21862219) FT /gene="MTAP" FT /locus_tag="RP11-145E5.1-004" FT /product="methylthioadenosine phosphorylase" FT /note="match: ESTs: Em:AI674711.1" FT misc_feature 21859389 FT /note="Clone_left_end: RP11-149I2" FT polyA_signal 21867059..21867064 FT polyA_site 21867077 FT misc_feature 21897853..21897950 FT /note="Single clone region. L1 repeat. Assembly confirmed FT by restriction digest data" FT misc_feature 21909258 FT /note="Clone_right_end: RP11-70L8" FT misc_feature 21911259..22010413 FT /note="annotated region of clone" FT mRNA 21966928..21967750 FT /gene="C9orf53" FT /locus_tag="RP11-149I2.3-001" FT /product="chromosome 9 open reading frame 53" FT /note="match: ESTs: Em:AA729227.1 Em:AA883806.1 FT Em:AA897353.1 Em:AA922526.1 Em:AI806497.1 Em:BE885998.1" FT /note="match: cDNAs: Em:AF211119.1" FT CDS 21967199..21967438 FT /gene="C9orf53" FT /locus_tag="RP11-149I2.3-001" FT /standard_name="OTTHUMP00000021151" FT /product="chromosome 9 open reading frame 53" FT /note="match: proteins: Sw:Q9UH64" FT /protein_id="CAH70598.1" FT /translation="MRQRGQEHLPTSVKSEPRACNNPTVAENRRVPSGLAAVIRNLTAL FT WNPSLGVSERRGGDWEPSRIPRLWARVGWIQLPG" FT polyA_signal 21967732..21967737 FT polyA_site 21967750 FT polyA_site complement(21967752) FT polyA_signal complement(21967773..21967778) FT mRNA complement(join(21969568..21969792,21970901..21971207)) FT /gene="CDKN2A" FT /locus_tag="RP11-149I2.2-008" FT /product="cyclin-dependent kinase inhibitor 2A (melanoma, FT p16, inhibits CDK4)" FT /note="match: ESTs: Em:AA909181.1 Em:AA973236.1 FT Em:AI989792.1" FT mRNA complement(join(21968179..21968241,21970901..21971207, FT 21974403..21974826)) FT /gene="CDKN2A" FT /locus_tag="RP11-149I2.2-003" FT /product="cyclin-dependent kinase inhibitor 2A (melanoma, FT p16, inhibits CDK4)" FT /note="match: cDNAs: Em:AF115544.1 Em:AJ316067.1" FT mRNA complement(join(21967752..21968241,21970901..21971207, FT 21974677..21975097)) FT /gene="CDKN2A" FT /locus_tag="RP11-149I2.2-001" FT /product="cyclin-dependent kinase inhibitor 2A (melanoma, FT p16, inhibits CDK4)" FT /note="match: ESTs: Em:BE887918.1 Em:BE888945.1 FT Em:BF439508.1 Em:BG030140.1 Em:BG338938.1 Em:BI258230.1 FT Em:BI861734.1 Em:BQ441101.1" FT /note="match: cDNAs: Em:L27211.1" FT CDS complement(join(21968228..21968241,21970901..21971207, FT 21974677..21974826)) FT /gene="CDKN2A" FT /locus_tag="RP11-149I2.2-001" FT /standard_name="OTTHUMP00000021147" FT /product="cyclin-dependent kinase inhibitor 2A (melanoma, FT p16, inhibits CDK4)" FT /note="match: proteins: Sw:P42771" FT /protein_id="CAH70600.1" FT /translation="MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYG FT RRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL FT DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD" FT misc_feature 21992498..21992520 FT /note="Sequence from uni-directional dGTP big dye FT terminator reads only" FT mRNA complement(join(21967997..21968241,21970901..21971207, FT 21994138..21994490)) FT /gene="CDKN2A" FT /locus_tag="RP11-149I2.2-004" FT /product="cyclin-dependent kinase inhibitor 2A (melanoma, FT p16, inhibits CDK4)" FT /note="match: cDNAs: Em:BC015960.1 Em:BC021998.1 FT Em:U38945.1" FT mRNA complement(join(21970901..21971207,21994138..21994471)) FT /gene="CDKN2A" FT /locus_tag="RP11-149I2.2-002" FT /product="cyclin-dependent kinase inhibitor 2A (melanoma, FT p16, inhibits CDK4)" FT /note="match: cDNAs: Em:S78535.1" FT CDS complement(join(21971002..21971207,21994138..21994453)) FT /gene="CDKN2A" FT /locus_tag="RP11-149I2.2-002" FT /standard_name="OTTHUMP00000021148" FT /product="cyclin-dependent kinase inhibitor 2A (melanoma, FT p16, inhibits CDK4)" FT /protein_id="CAH70601.1" FT /translation="MGRGRCVGPSLQLRGQEWRCSPLVPKGGAAAAELGPGGGENMVRR FT FLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRR FT PGHDDGQRPSGGAAAAPRRGAQLRRPRHSHPTRARRCPGGLPGHAGGAAPGRGAAGRAR FT CLGPSARGPG" FT mRNA join(21994790..21995160,AL354709.15:21019..21180, FT AL354709.15:24260..24572,AL354709.15:37903..38035, FT AL354709.15:38337..38486,AL354709.15:40692..40814, FT AL354709.15:47838..47973,AL354709.15:49945..50640, FT AL354709.15:53539..53612,AL354709.15:55530..55604, FT AL354709.15:57248..57343,AL354709.15:57821..57939, FT AL354709.15:87958..88100,AL354709.15:88844..88950, FT AL354709.15:103906..103981,AL354709.15:105252..105385, FT AL354709.15:110230..110353,AL354709.15:111786..111996, FT AL354709.15:112090..112681) FT /locus_tag="RP11-145E5.4-004" FT /product="antisense noncoding RNA in the INK4 locus FT (ANRIL)" FT /note="match: ESTs: Em:AA807394.1 Em:AI825844.1 FT Em:AW169296.1 Em:BX100299.1 Em:DB517189.1" FT mRNA join(21994794..21994848,21995047..21995160, FT AL354709.15:21019..21180,AL354709.15:24260..24542) FT /gene="MTAP" FT /locus_tag="RP11-145E5.1-005" FT /product="methylthioadenosine phosphorylase" FT /note="match: ESTs: Em:BI860238.1" FT mRNA complement(join(21968181..21968241,21970901..21971207, FT 21993881..21994052,21994820..21995268)) FT /gene="CDKN2A" FT /locus_tag="RP11-149I2.2-005" FT /product="cyclin-dependent kinase inhibitor 2A (melanoma, FT p16, inhibits CDK4)" FT /note="match: ESTs: Em:BE393890.1 Em:BF974706.1" FT mRNA complement(join(21970901..21971207,21994820..21995300)) FT /gene="CDKN2A" FT /locus_tag="RP11-149I2.2-006" FT /product="cyclin-dependent kinase inhibitor 2A (melanoma, FT p16, inhibits CDK4)" FT /note="match: ESTs: Em:BG178804.1" FT mRNA complement(join(21989336..21989954,21993881..21994067, FT 21994820..21994872)) FT /gene="CDKN2A" FT /locus_tag="RP11-149I2.2-007" FT /product="cyclin-dependent kinase inhibitor 2A (melanoma, FT p16, inhibits CDK4)" FT /note="match: ESTs: Em:BM676741.1 Em:BM719878.1" FT polyA_site complement(22002902) FT polyA_signal complement(22002920..22002925) FT misc_feature 22006414 FT /note="Clone_left_end: RP11-145E5" FT mRNA complement(join(22005986..22006246,22008674..22009271)) FT /gene="CDKN2B" FT /locus_tag="RP11-149I2.1-002" FT /product="cyclin-dependent kinase inhibitor 2B (p15, FT inhibits CDK4)" FT /note="match: cDNAs: Em:AF004819.1" FT CDS complement(22008716..22008952) FT /gene="CDKN2B" FT /locus_tag="RP11-149I2.1-002" FT /standard_name="OTTHUMP00000021155" FT /product="cyclin-dependent kinase inhibitor 2B (p15, FT inhibits CDK4)" FT /note="match: proteins: Tr:O15125" FT /protein_id="CAH70602.1" FT /translation="MREENKGMPSGGGSDEGLASAAARGLVEKVRQLLEAGADPNGVNR FT FGRRAIQVAGAPGPRRQGARERGARPRRIGAGT" FT mRNA complement(join(22002902..22006246,22008797..22009280)) FT /gene="CDKN2B" FT /locus_tag="RP11-149I2.1-001" FT /product="cyclin-dependent kinase inhibitor 2B (p15, FT inhibits CDK4)" FT /note="match: ESTs: Em:AL555679.1 Em:AL578124.1 FT Em:AW444761.1 Em:BE670498.1 Em:BF696824.1 Em:BF700109.1 FT Em:BG483912.1 Em:BG539402.1 Em:BG611927.1 Em:BG677776.1 FT Em:BG718749.1 Em:BG765173.1 Em:BG767760.1 Em:BI560960.1 FT Em:BM998488.1 Em:BQ002393.1 Em:BQ050692.1 Em:BQ923426.1" FT /note="match: cDNAs: Em:AF059567.1 Em:BC002010.1 FT Em:BC014469.1 Em:BC018984.1 Em:L36844.1" FT CDS complement(join(22005986..22006246,22008797..22008952)) FT /gene="CDKN2B" FT /locus_tag="RP11-149I2.1-001" FT /standard_name="OTTHUMP00000021154" FT /product="cyclin-dependent kinase inhibitor 2B (p15, FT inhibits CDK4)" FT /note="match: proteins: Sw:P42772 Tr:Q9UM95" FT /protein_id="CAH70603.1" FT /translation="MREENKGMPSGGGSDEGLASAAARGLVEKVRQLLEAGADPNGVNR FT FGRRAIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA FT RLDVRDAWGRLPVDLAEERGHRDVAGYLRTATGD" FT misc_feature 22010414..22165946 FT /note="annotated region of clone" FT CDS 22012154..22012535 FT /pseudo FT /locus_tag="RP11-145E5.3-001" FT /product="ubiquitin A-52 residue ribosomal protein fusion FT product 1 (UBA52) (RPL40) pseudogene" FT /note="match: proteins: Sw:P62974 Sw:P62988 Sw:P62991 FT Sw:P63049 Sw:P68204 Tr:O42388 Tr:Q90YS8 Tr:Q962Y0 FT Tr:Q9PT09" FT polyA_signal 22012595..22012600 FT mRNA join(22046750..22046899,22049105..22049227, FT 22056251..22056386,22112319..22112394,22113665..22113798, FT 22118643..22118701) FT /locus_tag="RP11-145E5.4-003" FT /product="antisense noncoding RNA in the INK4 locus FT (ANRIL)" FT /note="match: ESTs: Em:CN277071.1" FT mRNA join(22049184..22049227,22056251..22056386, FT 22077678..22077890) FT /locus_tag="RP11-145E5.4-002" FT /product="antisense noncoding RNA in the INK4 locus FT (ANRIL)" FT /note="match: ESTs: Em:BF002632.1" FT misc_feature 22054879 FT /note="Clone_right_end: RP11-149I2" FT misc_feature 22064707 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT mRNA join(AL359922.10:60033..60178,AL359922.10:72830..72916, FT AL359922.10:74111..74169,AL359922.10:75432..75599, FT 22029432..22029593,22032673..22032985) FT /gene="MTAP" FT /locus_tag="RP11-145E5.1-002" FT /product="methylthioadenosine phosphorylase" FT /note="match: cDNAs: Em:AF109294.1" FT polyA_signal 22077871..22077876 FT polyA_site 22077890 FT mRNA join(AL449423.14:85532..85902,22029432..22029593, FT 22032673..22032985,22046316..22046448,22046750..22046899, FT 22049105..22049227,22056251..22056386,22058358..22059053, FT 22061952..22062025,22063943..22064017,22065661..22065756, FT 22066234..22066352,22096371..22096513,22097257..22097363, FT 22112319..22112394,22113665..22113798,22118643..22118766, FT 22120199..22120409,22120503..22121094) FT /locus_tag="RP11-145E5.4-004" FT /product="antisense noncoding RNA in the INK4 locus FT (ANRIL)" FT /note="match: ESTs: Em:AA807394.1 Em:AI825844.1 FT Em:AW169296.1 Em:BX100299.1 Em:DB517189.1" FT mRNA join(AL449423.14:85536..85590,AL449423.14:85789..85902, FT 22029432..22029593,22032673..22032955) FT /gene="MTAP" FT /locus_tag="RP11-145E5.1-005" FT /product="methylthioadenosine phosphorylase" FT /note="match: ESTs: Em:BI860238.1" FT mRNA join(22113677..22113798,22120199..22120409, FT 22120503..22121096) FT /locus_tag="RP11-145E5.4-001" FT /product="antisense noncoding RNA in the INK4 locus FT (ANRIL)" FT /note="match: cDNAs: Em:BC038540.1" FT /note="match: ESTs: Em:BI765545.1" FT polyA_signal 22121070..22121075 FT polyA_site 22121096 FT misc_feature 22163847 FT /note="Clone_left_end: RP11-408N14" FT misc_feature 22165947..22319629 FT /note="annotated region of clone" FT misc_feature 22195146 FT /note="Clone_right_end: RP11-145E5" FT mRNA complement(join(22203989..22204058,22213277..22213348, FT 22213676..22213768,22214464..22214671)) FT /locus_tag="RP11-408N14.1-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BQ082119.1" FT misc_feature 22319430 FT /note="Clone_left_end: RP11-441I5" FT misc_feature 22319630..22489595 FT /note="annotated region of clone" FT misc_feature 22359044..22359047 FT /note="Sequence derived from neighbouring clone bA408N14 FT (AL157937) only" FT misc_feature 22368044 FT /note="Clone_right_end: RP11-408N14" FT mRNA join(22446840..22447731,22451063..22452472) FT /gene="DMRTA1" FT /locus_tag="RP11-441I5.1-001" FT /product="DMRT-like family A1" FT /note="match: ESTs: Em:AI017682.1 Em:AW771612.1 FT Em:AW771629.1 Em:BG565407.1 Em:BI769349.1 Em:BM562592.1" FT /note="match: cDNAs: Em:AJ290954.1 Em:AK096011.1" FT CDS join(22447065..22447731,22451063..22451910) FT /gene="DMRTA1" FT /locus_tag="RP11-441I5.1-001" FT /standard_name="OTTHUMP00000021156" FT /product="DMRT-like family A1" FT /note="match: proteins: Sw:Q5VZB9 Sw:Q5VZB9" FT /protein_id="CAH73857.1" FT /translation="MERSQCGSRDRGVSGRPHLAPGLVVAAPPPPSPALPVPSGMQVPP FT AFLRPPSLFLRAAAAAAAAAAATSGSGGCPPAPGLESGVGAVGCGYPRTPKCARCRNHG FT VVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEARGLQRLLCSG FT LSWPPGGRASGGGGRAENPQSTGGPAAGAALGLGALRQASGSATPAFEVFQQDYPEEKQ FT EQKESKCESCQNGQEELISKSHQLYLGSSSRSNGVIGKQSIGSSISEYSNKPDSILSPH FT PGEQSGGEESPRSLSSSDLESGNESEWVKDLTATKASLPTVSSRPRDPLDILTKIFPNY FT RRSRLEGILRFCKGDVVQAIEQVLNGKEHKPDNRNLANSEELENTAFQRASSFSLAGIG FT FGTLGNKSAFSPLQTTSASYGGDSSLYGVNPRVGISPLRLAYSSAGRGLSGFMSPYLTP FT GLVPTLPFRPALDYAFSGMIRDSSYLSSKDSITCGRLYFRPNQDNP" FT misc_feature 22447953..22448360 FT /note="Single clone region. Sequence derived from subcloned FT PCR product only but to a 32x coverage. Assembly confirmed FT by restriction enzyme digest data" FT misc_feature 22489495 FT /note="Clone_right_end: RP11-441I5" FT misc_feature 22589621 FT /note="Clone_right_end: RP11-11J1" FT misc_feature 22624959 FT /note="Clone_left_end: RP11-370B11" FT repeat_region complement(22815685..22817251) FT /rpt_family="MaLR" FT repeat_region complement(22815098..22815510) FT /rpt_family="MaLR" FT misc_feature complement(22814091..22814712) FT /note="similar to EST AW861261 (NID:g7956954)" FT repeat_region complement(22814444..22814609) FT /rpt_family="L2" FT repeat_region complement(22814157..22814198) FT /rpt_family="Mariner" FT repeat_region complement(22812971..22813273) FT /rpt_family="Alu" FT repeat_region complement(22812544..22812706) FT /rpt_family="MER1_type" FT repeat_region complement(22812104..22812403) FT /rpt_family="Alu" FT repeat_region complement(22811347..22811644) FT /rpt_family="Alu" FT repeat_region complement(22810281..22810506) FT /rpt_family="L2" FT repeat_region complement(22809900..22810012) FT /rpt_family="L2" FT repeat_region complement(22809288..22809398) FT /rpt_family="MaLR" FT repeat_region complement(22808555..22808663) FT /rpt_family="MIR" FT repeat_region complement(22806138..22806350) FT /rpt_family="MIR" FT repeat_region complement(22804700..22805825) FT /rpt_family="L1" FT repeat_region complement(22804280..22804625) FT /rpt_family="L1" FT repeat_region complement(22803408..22804293) FT /rpt_family="MaLR" FT repeat_region complement(22803010..22803368) FT /rpt_family="MaLR" FT repeat_region complement(22802664..22802985) FT /rpt_family="MaLR" FT repeat_region complement(22801043..22802542) FT /rpt_family="L1" FT repeat_region complement(22800620..22801049) FT /rpt_family="L1" FT repeat_region complement(22799356..22800587) FT /rpt_family="L1" FT repeat_region complement(22797920..22798064) FT /rpt_family="MER1_type" FT repeat_region complement(22797411..22797578) FT /rpt_family="MIR" FT repeat_region complement(22797100..22797212) FT /rpt_family="MIR" FT repeat_region complement(22796198..22796511) FT /rpt_family="Alu" FT repeat_region complement(22795467..22795765) FT /rpt_family="L1" FT repeat_region complement(22794133..22794267) FT /rpt_family="MaLR" FT repeat_region complement(22793836..22794069) FT /rpt_family="MaLR" FT repeat_region complement(22793544..22793835) FT /rpt_family="L2" FT repeat_region complement(22793339..22793429) FT /rpt_family="L2" FT repeat_region complement(22791677..22792018) FT /rpt_family="L2" FT repeat_region complement(22791463..22791633) FT /rpt_family="L1" FT repeat_region complement(22790782..22791477) FT /rpt_family="L1" FT repeat_region complement(22790478..22790781) FT /rpt_family="Alu" FT repeat_region complement(22790005..22790477) FT /rpt_family="L1" FT repeat_region complement(22789702..22790004) FT /rpt_family="Alu" FT repeat_region complement(22789511..22789701) FT /rpt_family="L1" FT repeat_region complement(22787822..22789510) FT /rpt_family="L1" FT repeat_region complement(22785585..22787815) FT /rpt_family="L1" FT repeat_region complement(22785296..22785586) FT /rpt_family="L1" FT repeat_region complement(22785016..22785209) FT /rpt_family="L2" FT repeat_region complement(22784819..22784950) FT /rpt_family="MaLR" FT repeat_region complement(22783031..22783106) FT /rpt_family="MaLR" FT repeat_region complement(22782690..22782904) FT /rpt_family="L2" FT repeat_region complement(22782402..22782615) FT /rpt_family="L2" FT repeat_region complement(22782190..22782382) FT /rpt_family="MER2_type" FT repeat_region complement(22778821..22782189) FT /rpt_family="L1" FT repeat_region complement(22778778..22778819) FT /rpt_family="MER2_type" FT repeat_region complement(22777143..22778548) FT /rpt_family="L1" FT repeat_region complement(22776516..22776830) FT /rpt_family="L1" FT repeat_region complement(22776421..22776514) FT /rpt_family="MaLR" FT repeat_region complement(22776176..22776352) FT /rpt_family="L2" FT misc_feature complement(22775710..22776023) FT /note="similar to EST T47361 (NID:g649342) yb13a08.s1" FT repeat_region complement(22774497..22774610) FT /rpt_family="Alu" FT repeat_region complement(22771532..22771723) FT /rpt_family="L1" FT repeat_region complement(22771293..22771513) FT /rpt_family="L1" FT repeat_region complement(22770504..22771229) FT /rpt_family="L1" FT repeat_region complement(22769992..22770412) FT /rpt_family="L1" FT repeat_region complement(22768845..22769938) FT /rpt_family="L1" FT repeat_region complement(22768432..22768840) FT /rpt_family="L1" FT repeat_region complement(22768336..22768412) FT /rpt_family="MaLR" FT repeat_region complement(22767755..22768319) FT /rpt_family="L1" FT repeat_region complement(22767591..22767673) FT /rpt_family="L1" FT repeat_region complement(22765306..22766986) FT /rpt_family="L1" FT repeat_region complement(22764463..22765032) FT /rpt_family="L1" FT repeat_region complement(22762928..22764063) FT /rpt_family="L1" FT repeat_region complement(22762625..22762927) FT /rpt_family="Alu" FT repeat_region complement(22762501..22762624) FT /rpt_family="L1" FT repeat_region complement(22762339..22762478) FT /rpt_family="L1" FT repeat_region complement(22762251..22762342) FT /rpt_family="L1" FT repeat_region complement(22760809..22762238) FT /rpt_family="L1" FT repeat_region complement(22758596..22758950) FT /rpt_family="L1" FT repeat_region complement(22757861..22758517) FT /rpt_family="L1" FT repeat_region complement(22757614..22757740) FT /rpt_family="L2" FT repeat_region complement(22756801..22756974) FT /rpt_family="L1" FT repeat_region complement(22754540..22754591) FT /rpt_family="L2" FT repeat_region complement(22753869..22754133) FT /rpt_family="L1" FT misc_feature complement(22753362..22753431) FT /note="similar to EST BE048035 (NID:g8365088) tz46a03.y1" FT repeat_region complement(22751771..22751928) FT /rpt_family="MIR" FT repeat_region complement(22750814..22750858) FT /rpt_family="L2" FT repeat_region complement(22750630..22750728) FT /rpt_family="MIR" FT misc_feature complement(22749511..22749986) FT /note="similar to EST AI890906 (NID:g5596070) wm91g02.x1" FT misc_feature complement(22749530..22749986) FT /note="similar to EST AI418273 (NID:g4264204) tf74c06.x1" FT misc_feature complement(22749528..22749986) FT /note="similar to EST AL048302 (NID:g5936429)" FT misc_feature complement(22749511..22749971) FT /note="similar to EST AW172696 (NID:g6438644) xj02a08.x1" FT /note="similar to EST AW515286 (NID:g7153368) xu94a12.x1" FT misc_feature complement(22749715..22749971) FT /note="similar to EST AI084276 (NID:g3422699) oy40h08.s1" FT misc_feature complement(22749524..22749971) FT /note="similar to EST AI147655 (NID:g3675337) qb27e03.x1" FT misc_feature complement(22749628..22749971) FT /note="similar to EST AA552956 (NID:g2323210) nk61c12.s1" FT misc_feature complement(22749590..22749971) FT /note="similar to EST AW338291 (NID:g6834917) xw69g02.x1" FT misc_feature complement(22749512..22749971) FT /note="similar to EST AA081018 (NID:g1623022) zn33c05.s1" FT misc_feature complement(22749739..22749968) FT /note="similar to EST D57636 (NID:g964258)" FT misc_feature complement(22749702..22749966) FT /note="similar to EST BE048035 (NID:g8365088) tz46a03.y1" FT misc_feature complement(22749511..22749924) FT /note="similar to EST AI754339 (NID:g5132603) cr23f05.x1" FT /note="similar to EST AI754125 (NID:g5132389) cr20b09.x1" FT misc_feature complement(22749541..22749924) FT /note="similar to EST AW019898 (NID:g5873428) df01c10.y1" FT misc_feature complement(22749528..22749924) FT /note="similar to EST AW576187 (NID:g7247726)" FT misc_feature complement(22749600..22749920) FT /note="similar to EST AI867921 (NID:g5540937) wb39g11.x1" FT misc_feature complement(22749715..22749919) FT /note="similar to EST D57628 (NID:g964250)" FT misc_feature complement(22749740..22749919) FT /note="similar to EST AA974951 (NID:g3150743) on02b07.s1" FT misc_feature complement(22749563..22749919) FT /note="similar to EST R35857 (NID:g792758) yh90b10.s1" FT misc_feature complement(22749528..22749916) FT /note="similar to EST AW611575 (NID:g7316761) hg85g07.x1" FT misc_feature complement(22749513..22749834) FT /note="similar to EST D58286 (NID:g964908)" FT misc_feature complement(22749528..22749833) FT /note="similar to EST AL041962 (NID:g5421308)" FT misc_feature complement(22749532..22749765) FT /note="similar to EST AW866119 (NID:g8000169)" FT misc_feature complement(22749528..22749707) FT /note="similar to EST AW992863 (NID:g8252987)" FT misc_feature complement(22749528..22749619) FT /note="similar to EST N79853 (NID:g1242554) yz84a04.r1" FT misc_feature complement(22749528..22749587) FT /note="similar to EST BE072782 (NID:g8418955)" FT repeat_region complement(22749207..22749516) FT /rpt_family="Alu" FT misc_feature complement(22748996..22749203) FT /note="similar to EST AL048302 (NID:g5936429)" FT misc_feature complement(22749083..22749203) FT /note="similar to EST AW576187 (NID:g7247726)" FT misc_feature complement(22748901..22749203) FT /note="similar to EST N79853 (NID:g1242554) yz84a04.r1" FT misc_feature complement(22749063..22749203) FT /note="similar to EST AL041962 (NID:g5421308)" FT misc_feature complement(22748657..22749203) FT /note="similar to EST BE072782 (NID:g8418955)" FT misc_feature complement(22748812..22749203) FT /note="similar to EST AW992863 (NID:g8252987)" FT misc_feature complement(22749036..22749203) FT /note="similar to EST AW611575 (NID:g7316761) hg85g07.x1" FT misc_feature complement(22748868..22749178) FT /note="similar to EST H85923 (NID:g1067502) ys95e01.r1" FT misc_feature complement(22748746..22749102) FT /note="similar to EST R57096 (NID:g827154)" FT misc_feature complement(22748518..22748969) FT /note="similar to EST R82605 (NID:g861996) yj19d10.r1" FT misc_feature complement(22748433..22748937) FT /note="similar to EST AA166809 (NID:g1745257) zo85h03.r1" FT misc_feature complement(22748700..22748925) FT /note="similar to EST AW995755 (NID:g8255989)" FT misc_feature complement(22748496..22748908) FT /note="similar to EST AA150335 (NID:g1721847) zl03f01.r1" FT misc_feature complement(22748433..22748779) FT /note="similar to EST AA150640 (NID:g1722152) zl43c02.r1" FT misc_feature complement(22748441..22748719) FT /note="similar to EST AA372716 (NID:g2025033)" FT misc_feature complement(22748433..22748646) FT /note="similar to EST AA046486 (NID:g1524479) zk62a08.r1" FT misc_feature complement(22748433..22748643) FT /note="similar to EST AW904693 (NID:g8068807)" FT misc_feature complement(22748433..22748618) FT /note="similar to EST R27649 (NID:g783784) yh64a08.r1" FT misc_feature complement(22748433..22748582) FT /note="similar to EST AW868498 (NID:g8002563)" FT misc_feature complement(22748041..22748438) FT /note="similar to EST AW501972 (NID:g7116007)" FT misc_feature complement(22748073..22748438) FT /note="similar to EST AW367016 (NID:g6871666)" FT misc_feature complement(22748001..22748419) FT /note="similar to EST AA797058 (NID:g2860013) vs94h06.r1" FT misc_feature complement(22747700..22748399) FT /note="similar to EST AI637860 (NID:g4690094) tt33f12.x1" FT misc_feature complement(22747700..22748251) FT /note="similar to EST AI566100 (NID:g4524552) tn53d08.x1" FT misc_feature complement(22747700..22748250) FT /note="similar to EST AI638420 (NID:g4690654) tt31g07.x1" FT misc_feature complement(22747824..22748249) FT /note="similar to EST AA193554 (NID:g1783022) zr42f08.s1" FT misc_feature complement(22747700..22748243) FT /note="similar to EST AA675919 (NID:g2775266)" FT misc_feature complement(22747700..22748236) FT /note="similar to EST AA702702 (NID:g2705815) zi90h03.s1" FT misc_feature complement(22747930..22748223) FT /note="similar to EST F08553 (NID:g677120)" FT misc_feature complement(22747700..22747956) FT /note="similar to EST AW958575 (NID:g8148259)" FT misc_feature complement(22747438..22747699) FT /note="similar to EST AW504805 (NID:g7142472)" FT misc_feature complement(22747215..22747677) FT /note="similar to EST AA143168 (NID:g1712538) zl49f01.r1" FT misc_feature complement(22747259..22747662) FT /note="similar to EST AA148782 (NID:g1721833) zl03d02.r1" FT misc_feature complement(22747065..22747622) FT /note="similar to EST AI862540 (NID:g5526647) wj15c06.x1" FT misc_feature complement(22747065..22747520) FT /note="similar to EST AI023380 (NID:g3239786) ow63g07.x1" FT misc_feature complement(22747166..22747519) FT /note="similar to EST H22906 (NID:g891601) ym54h09.s1" FT misc_feature complement(22747048..22747517) FT /note="similar to EST AW964734 (NID:g8154570)" FT misc_feature complement(22747065..22747510) FT /note="similar to EST AI823940 (NID:g5444611) wj21b07.x1" FT misc_feature complement(22747067..22747471) FT /note="similar to EST AI952533 (NID:g5744843) wx75a10.x1" FT misc_feature complement(22747065..22747458) FT /note="similar to EST R46739 (NID:g822706) yg55e10.s1" FT misc_feature complement(22746839..22747392) FT /note="similar to EST AI905523 (NID:g6495910)" FT misc_feature complement(22746851..22747392) FT /note="similar to EST AI905538 (NID:g6495925)" FT misc_feature complement(22746848..22747353) FT /note="similar to EST AI027895 (NID:g3246594) ow52f06.x1" FT misc_feature complement(22746848..22747319) FT /note="similar to EST AW382739 (NID:g6887398)" FT misc_feature complement(22746848..22747258) FT /note="similar to EST AW242527 (NID:g6576281) xm88b07.x1" FT misc_feature complement(22746848..22747131) FT /note="similar to EST AA918732 (NID:g3058622) ol68e08.s1" FT misc_feature complement(22746848..22746919) FT /note="similar to EST AW239283 (NID:g6571673) xb38c11.y1" FT misc_feature complement(22746525..22746776) FT /note="similar to EST AA232605 (NID:g1855460) zr28d06.r1" FT misc_feature complement(22746618..22746754) FT /note="similar to EST AW382739 (NID:g6887398)" FT misc_feature complement(22746508..22746754) FT /note="similar to EST AW239283 (NID:g6571673) xb38c11.y1" FT misc_feature complement(22746623..22746738) FT /note="similar to EST AI905523 (NID:g6495910)" FT misc_feature complement(22746508..22746717) FT /note="similar to EST AI123335 (NID:g3539101) qa48c01.x1" FT repeat_region complement(22745994..22746098) FT /rpt_family="L1" FT repeat_region complement(22745856..22745986) FT /rpt_family="L1" FT repeat_region complement(22745517..22745794) FT /rpt_family="L1" FT repeat_region complement(22745124..22745433) FT /rpt_family="Alu" FT repeat_region complement(22744758..22745070) FT /rpt_family="L1" FT repeat_region complement(22744573..22744743) FT /rpt_family="L1" FT repeat_region complement(22743945..22744565) FT /rpt_family="L1" FT repeat_region complement(22743084..22743933) FT /rpt_family="L1" FT repeat_region complement(22742903..22743073) FT /rpt_family="L1" FT repeat_region complement(22742357..22742448) FT /rpt_family="MaLR" FT repeat_region complement(22733573..22733694) FT /rpt_family="MIR" FT repeat_region complement(22732465..22732931) FT /rpt_family="L1" FT repeat_region complement(22731856..22732031) FT /rpt_family="L2" FT repeat_region complement(22731543..22731802) FT /rpt_family="L1" FT repeat_region complement(22729313..22729547) FT /rpt_family="L1" FT repeat_region complement(22728760..22729030) FT /rpt_family="L1" FT repeat_region complement(22728353..22728711) FT /rpt_family="L1" FT repeat_region complement(22727133..22728337) FT /rpt_family="L1" FT repeat_region complement(22725856..22727131) FT /rpt_family="L1" FT repeat_region complement(22725022..22725619) FT /rpt_family="MER2_type" FT repeat_region complement(22723250..22723467) FT /rpt_family="MaLR" FT repeat_region complement(22720642..22720873) FT /rpt_family="L1" FT repeat_region complement(22720502..22720636) FT /rpt_family="Alu" FT repeat_region complement(22717238..22717653) FT /rpt_family="L1" FT repeat_region complement(22716493..22717188) FT /rpt_family="L1" FT repeat_region complement(22716057..22716452) FT /rpt_family="L1" FT repeat_region complement(22715746..22716056) FT /rpt_family="Alu" FT repeat_region complement(22714524..22715745) FT /rpt_family="L1" FT repeat_region complement(22714348..22714471) FT /rpt_family="L1" FT repeat_region complement(22713977..22714347) FT /rpt_family="MaLR" FT repeat_region complement(22712044..22712401) FT /rpt_family="MaLR" FT repeat_region complement(22711654..22712043) FT /rpt_family="L1" FT repeat_region complement(22711170..22711533) FT /rpt_family="ERVL" FT repeat_region complement(22710247..22711108) FT /rpt_family="L1" FT repeat_region complement(22709962..22710246) FT /rpt_family="Alu" FT repeat_region complement(22709949..22709961) FT /rpt_family="L1" FT repeat_region complement(22709555..22709948) FT /rpt_family="MaLR" FT repeat_region complement(22709217..22709554) FT /rpt_family="L1" FT repeat_region complement(22708890..22709215) FT /rpt_family="L1" FT repeat_region complement(22708373..22708851) FT /rpt_family="L1" FT repeat_region complement(22708006..22708315) FT /rpt_family="L1" FT repeat_region complement(22707393..22707757) FT /rpt_family="L1" FT repeat_region complement(22706732..22707042) FT /rpt_family="Alu" FT repeat_region complement(22704794..22704953) FT /rpt_family="MIR" FT repeat_region complement(22699689..22699872) FT /rpt_family="CR1" FT repeat_region complement(22699325..22699652) FT /rpt_family="ERV" FT repeat_region complement(22699014..22699181) FT /rpt_family="MIR" FT repeat_region complement(22697724..22697787) FT /rpt_family="L2" FT repeat_region complement(22695068..22695171) FT /rpt_family="MIR" FT repeat_region complement(22694807..22694860) FT /rpt_family="MIR" FT repeat_region complement(22693434..22693770) FT /rpt_family="ERVL" FT repeat_region complement(22693283..22693400) FT /rpt_family="ERVL" FT repeat_region complement(22692019..22693114) FT /rpt_family="ERVL" FT repeat_region complement(22690573..22690984) FT /rpt_family="ERVL" FT repeat_region complement(22689253..22689788) FT /rpt_family="L1" FT repeat_region complement(22688836..22689043) FT /rpt_family="MIR" FT repeat_region complement(22688658..22688772) FT /rpt_family="MIR" FT misc_feature complement(22688140..22688606) FT /note="similar to EST AA195472 (NID:g1785312) zq48g05.s1" FT repeat_region complement(22688084..22688424) FT /rpt_family="ERV1" FT repeat_region complement(22687966..22688083) FT /rpt_family="ERV1" FT repeat_region complement(22687658..22687965) FT /rpt_family="ERV1" FT repeat_region complement(22687606..22687657) FT /rpt_family="ERV1" FT misc_feature complement(22687546..22687626) FT /note="similar to EST AA205910 (NID:g1801281) zq48g05.r1" FT repeat_region complement(22686727..22687022) FT /rpt_family="Alu" FT repeat_region complement(22685569..22685741) FT /rpt_family="MIR" FT misc_feature complement(22682469..22682712) FT /note="similar to EST AA205910 (NID:g1801281) zq48g05.r1" FT repeat_region complement(22681818..22681946) FT /rpt_family="T2_type" FT repeat_region complement(22679460..22679584) FT /rpt_family="MIR" FT repeat_region complement(22679391..22679445) FT /rpt_family="MIR" FT repeat_region complement(22677872..22678390) FT /rpt_family="L2" FT repeat_region complement(22676914..22677444) FT /rpt_family="MaLR" FT repeat_region complement(22676413..22676546) FT /rpt_family="MIR" FT repeat_region complement(22672500..22672599) FT /rpt_family="MIR" FT repeat_region complement(22670641..22671039) FT /rpt_family="L2" FT repeat_region complement(22670305..22670537) FT /rpt_family="MIR" FT repeat_region complement(22669544..22669638) FT /rpt_family="ERV1" FT repeat_region complement(22669258..22669492) FT /rpt_family="ERV1" FT repeat_region complement(22669110..22669194) FT /rpt_family="ERV1" FT repeat_region complement(22666608..22666790) FT /rpt_family="L2" FT repeat_region complement(22666453..22666510) FT /rpt_family="L2" FT repeat_region complement(22665121..22666419) FT /rpt_family="L1" FT repeat_region complement(22664817..22665120) FT /rpt_family="Alu" FT repeat_region complement(22664554..22664816) FT /rpt_family="L1" FT repeat_region complement(22664398..22664553) FT /rpt_family="MaLR" FT repeat_region complement(22663659..22664061) FT /rpt_family="ERV1" FT repeat_region complement(22660757..22660905) FT /rpt_family="ERV1" FT repeat_region complement(22660272..22660766) FT /rpt_family="ERV1" FT repeat_region complement(22660087..22660269) FT /rpt_family="ERV1" FT repeat_region complement(22659519..22660089) FT /rpt_family="ERV1" FT repeat_region complement(22659302..22659517) FT /rpt_family="ERV1" FT repeat_region complement(22658926..22659301) FT /rpt_family="ERV1" FT repeat_region complement(22658526..22658925) FT /rpt_family="ERV1" FT repeat_region complement(22655885..22656040) FT /rpt_family="MIR" FT repeat_region complement(22653459..22653595) FT /rpt_family="MIR" FT repeat_region complement(22653234..22653313) FT /rpt_family="MIR" FT repeat_region complement(22651505..22651825) FT /rpt_family="Alu" FT repeat_region complement(22650773..22650945) FT /rpt_family="MER1_type" FT repeat_region complement(22649887..22650046) FT /rpt_family="MIR" FT repeat_region complement(22647954..22648235) FT /rpt_family="Alu" FT repeat_region complement(22647331..22647639) FT /rpt_family="Alu" FT repeat_region complement(22645320..22645687) FT /rpt_family="MER2_type" FT repeat_region complement(22644424..22644649) FT /rpt_family="MaLR" FT repeat_region complement(22644217..22644416) FT /rpt_family="MaLR" FT repeat_region complement(22643792..22644119) FT /rpt_family="CR1" FT repeat_region complement(22643359..22643582) FT /rpt_family="MIR" FT repeat_region complement(22642316..22642555) FT /rpt_family="MIR" FT repeat_region complement(22641145..22641238) FT /rpt_family="MIR" FT repeat_region complement(22639799..22640003) FT /rpt_family="MIR" FT repeat_region complement(22639100..22639379) FT /rpt_family="MaLR" FT repeat_region complement(22637332..22637623) FT /rpt_family="Alu" FT repeat_region complement(22635028..22635335) FT /rpt_family="Alu" FT repeat_region complement(22634597..22634790) FT /rpt_family="MaLR" FT repeat_region complement(22634108..22634181) FT /rpt_family="L1" FT repeat_region complement(22633896..22634062) FT /rpt_family="MER1_type" FT repeat_region complement(22633543..22633894) FT /rpt_family="L1" FT repeat_region complement(22633348..22633483) FT /rpt_family="L1" FT repeat_region complement(22631383..22633343) FT /rpt_family="L1" FT repeat_region complement(22631167..22631381) FT /rpt_family="L1" FT repeat_region complement(22629762..22631151) FT /rpt_family="L1" FT repeat_region complement(22628450..22629730) FT /rpt_family="L1" FT misc_feature 22818332..22893212 FT /note="annotated region of clone" FT misc_feature 22889213 FT /note="Clone_left_end: RP11-103B9" FT mRNA join(complement(AC017067.4:172037..172133), FT complement(AC017067.4:143690..143890), FT complement(AC017067.4:135620..135723), FT complement(AC017067.4:94903..95024),22820737..22821597, FT 22823251..22824212) FT /locus_tag="RP11-399D6.2-001" FT /product="novel transcript" FT /note="match: cDNAs: Em:AK092601.1" FT misc_feature 22919401..22919444 FT /note="Single clone region. Sequence from clone PCR only" FT misc_feature 22991636 FT /note="Clone_left_end: RP11-214L15" FT misc_feature 23049152 FT /note="Clone_right_end: RP11-103B9" FT repeat_region 23051444..23051513 FT /rpt_family="tattttt repeat" FT /rpt_type=TANDEM FT /note="homology = 70.0%, counts = 10" FT repeat_region 23051574..23051612 FT /rpt_family="ALU" FT /note="97% identity: matches 165..203 of consensus" FT repeat_region 23051640..23051747 FT /rpt_family="ALU" FT /note="84% identity: matches 92..199 of consensus" FT repeat_region 23051705..23051824 FT /rpt_family="THR" FT /note="85% identity: matches 86..205 of consensus" FT repeat_region complement(23051763..23051830) FT /rpt_family="L1" FT /note="86% identity: matches 161..228 of consensus" FT exon 23052088..23052174 FT /note="MZEF prediction, score = 0.570" FT repeat_region complement(23053220..23053285) FT /rpt_family="L1" FT /note="90% identity: matches 1226..1291 of consensus" FT repeat_region complement(23053611..23053693) FT /rpt_family="L1" FT /note="85% identity: matches 805..887 of consensus" FT exon complement(23053729..23053741) FT /note="XPOUND prediction, score = 0.396" FT repeat_region 23053993..23054038 FT /rpt_family="L1" FT /note="91% identity: matches 2656..2701 of consensus" FT repeat_region 23054106..23054183 FT /rpt_family="L1" FT /note="85% identity: matches 855..932 of consensus" FT exon 23054231..23054288 FT /note="MZEF prediction, score = 0.512" FT exon 23054777..23054868 FT /note="GENSCAN prediction, score = 0.61" FT repeat_region complement(23054988..23055038) FT /rpt_family="L1" FT /note="94% identity: matches 47..97 of consensus" FT repeat_region 23055160..23055259 FT /rpt_family="L1" FT /note="86% identity: matches 302..400 of consensus" FT exon 23055194..23055307 FT /note="MZEF prediction, score = 0.579" FT repeat_region 23055500..23055896 FT /rpt_type=INVERTED FT /note="IR2, 94% complementary to IR2' (38322..38722)" FT exon 23055870..23055938 FT /note="MZEF prediction, score = 0.723" FT repeat_region 23056689..23057089 FT /rpt_type=INVERTED FT /note="IR2', 94% complementary to IR2 (37133..37529)" FT exon 23057454..23057799 FT /note="GENSCAN prediction, score = 10.48" FT repeat_region 23057967..23057979 FT /note="CCTG repeat" FT exon complement(23058025..23058027) FT /note="XPOUND prediction, score = 0.202" FT exon complement(23058031..23058041) FT /note="XPOUND prediction, score = 0.204" FT repeat_region 23060666..23060735 FT /rpt_family="tatatatatg repeat" FT /rpt_type=TANDEM FT /note="homology = 72.9%, counts = 7" FT repeat_region 23062299..23062313 FT /note="TTGAA repeat" FT repeat_region complement(23062637..23062800) FT /rpt_family="THE" FT /note="88% identity: matches 59..222 of consensus" FT repeat_region complement(23062829..23062921) FT /rpt_family="THE" FT /note="86% identity: matches 82..178 of consensus" FT repeat_region complement(23062880..23063003) FT /rpt_family="THE" FT /note="84% identity: matches 1..125 of consensus" FT repeat_region complement(23063018..23063427) FT /rpt_family="THR" FT /note="84% identity: matches 743..1148 of consensus" FT exon complement(23063415..23063457) FT /note="XPOUND prediction, score = 0.300" FT repeat_region complement(23063482..23063562) FT /rpt_family="THR" FT /note="90% identity: matches 954..1034 of consensus" FT exon complement(23063550..23063804) FT /note="GENSCAN prediction, score = 7.06" FT repeat_region complement(23063560..23063800) FT /rpt_family="THR" FT /note="83% identity: matches 739..979 of consensus" FT repeat_region complement(23063893..23064067) FT /rpt_family="THR" FT /note="85% identity: matches 64..238 of consensus" FT repeat_region complement(23064146..23064450) FT /rpt_family="THR" FT /note="84% identity: matches 58..364 of consensus" FT repeat_region complement(23064522..23064644) FT /rpt_family="THE" FT /note="89% identity: matches 129..251 of consensus" FT repeat_region complement(23064732..23064784) FT /rpt_family="THR" FT /note="94% identity: matches 57..109 of consensus" FT repeat_region complement(23064830..23064949) FT /rpt_family="THE" FT /note="86% identity: matches 14..133 of consensus" FT repeat_region 23065756..23065772 FT /note="TCTA repeat" FT repeat_region 23068106..23068683 FT /rpt_family="L1" FT /note="89% identity: matches 3549..4126 of consensus" FT repeat_region 23068581..23068849 FT /rpt_family="L1" FT /note="86% identity: matches 2..269 of consensus" FT exon complement(23068785..23068794) FT /note="XPOUND prediction, score = 0.202" FT exon complement(23068802..23068812) FT /note="XPOUND prediction, score = 0.406" FT repeat_region 23069640..23069798 FT /rpt_family="L1" FT /note="85% identity: matches 276..434 of consensus" FT repeat_region 23069895..23069949 FT /rpt_family="L1" FT /note="89% identity: matches 175..229 of consensus" FT repeat_region 23069983..23070064 FT /rpt_family="L1" FT /note="86% identity: matches 233..314 of consensus" FT repeat_region 23070386..23070510 FT /rpt_family="L1" FT /note="87% identity: matches 1790..1914 of consensus" FT exon 23070718..23070729 FT /note="XPOUND prediction, score = 0.209" FT repeat_region 23070940..23071200 FT /rpt_family="ALU" FT /note="86% identity: matches 158..417 of consensus" FT repeat_region complement(23070987..23071055) FT /rpt_family="L1" FT /note="89% identity: matches 400..468 of consensus" FT exon 23071001..23071026 FT /note="XPOUND prediction, score = 0.303" FT exon 23071151..23071194 FT /note="XPOUND prediction, score = 0.307" FT exon 23073737..23073823 FT /note="MZEF prediction, score = 0.562" FT repeat_region 23073872..23073962 FT /rpt_family="attatattttaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 68.1%, counts = 7" FT misc_feature 23075120..23075397 FT /note="CpG_island (%GC=62.9, o/e=0.89, #CpGs=25)" FT repeat_region complement(23075120..23075401) FT /rpt_family="L1" FT /note="92% identity: matches 245..527 of consensus" FT repeat_region 23075121..23075401 FT /rpt_family="ALU" FT /note="100% identity: matches 1..281 of consensus" FT repeat_region 23075255..23075420 FT /rpt_type=INVERTED FT /note="IR3, 84% complementary to IR3' (58053..58218)" FT repeat_region 23075544..23075588 FT /rpt_family="caaattttattttac repeat" FT /rpt_type=TANDEM FT /note="homology = 88.9%, counts = 3" FT repeat_region 23076420..23076585 FT /rpt_type=INVERTED FT /note="IR3', 84% complementary to IR3 (56888..57053)" FT repeat_region complement(23076439..23076585) FT /rpt_family="ALU" FT /note="84% identity: matches 135..281 of consensus" FT repeat_region 23076453..23076537 FT /rpt_family="L1" FT /note="89% identity: matches 175..259 of consensus" FT repeat_region 23076641..23076651 FT /note="TA repeat" FT repeat_region complement(23077968..23078229) FT /rpt_family="ALU" FT /note="92% identity: matches 314..577 of consensus" FT repeat_region 23077968..23078242 FT /rpt_family="L1" FT /note="88% identity: matches 251..528 of consensus" FT misc_feature 23077974..23078241 FT /note="CpG_island (%GC=61.2, o/e=0.75, #CpGs=18)" FT exon 23078180..23078240 FT /note="XPOUND prediction, score = 0.685" FT exon 23078472..23078490 FT /note="XPOUND prediction, score = 0.795" FT repeat_region complement(23078565..23078692) FT /rpt_family="ALU" FT /note="85% identity: matches 153..281 of consensus" FT repeat_region complement(23078717..23078791) FT /rpt_family="ALU" FT /note="89% identity: matches 66..140 of consensus" FT repeat_region 23078724..23078791 FT /rpt_family="L1" FT /note="91% identity: matches 464..531 of consensus" FT exon 23079369..23079384 FT /note="XPOUND prediction, score = 0.205" FT repeat_region 23079687..23079700 FT /note="AGAA repeat" FT exon 23079975..23079978 FT /note="XPOUND prediction, score = 0.207" FT exon 23082255..23082314 FT /note="MZEF prediction, score = 0.516" FT exon complement(23082406..23082460) FT /note="MZEF prediction, score = 0.534" FT repeat_region 23083568..23083869 FT /rpt_family="THE" FT /note="84% identity: matches 1..305 of consensus" FT exon complement(23084131..23084182) FT /note="MZEF prediction, score = 0.804" FT exon 23084651..23084664 FT /note="XPOUND prediction, score = 0.308" FT exon complement(23084704..23084764) FT /note="XPOUND prediction, score = 0.355" FT repeat_region 23084715..23086895 FT /rpt_family="L1" FT /note="88% identity: matches 3629..5827 of consensus" FT repeat_region 23086878..23086916 FT /rpt_family="L1" FT /note="94% identity: matches 3..41 of consensus" FT repeat_region 23086949..23087078 FT /rpt_family="L1" FT /note="90% identity: matches 3554..3683 of consensus" FT exon complement(23087008..23087018) FT /note="XPOUND prediction, score = 0.338" FT exon 23088153..23088363 FT /note="MZEF prediction, score = 0.574" FT exon complement(23088948..23089123) FT /note="XPOUND prediction, score = 0.431" FT exon complement(23089492..23089592) FT /note="MZEF prediction, score = 0.678" FT exon complement(23089730..23089748) FT /note="XPOUND prediction, score = 0.233" FT repeat_region 23089835..23089898 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 68.8%, counts = 32" FT repeat_region 23091162..23091433 FT /rpt_family="ALU" FT /note="86% identity: matches 10..280 of consensus" FT repeat_region complement(23091170..23091428) FT /rpt_family="L1" FT /note="82% identity: matches 167..420 of consensus" FT repeat_region 23091437..23091459 FT /note="AAAT repeat" FT repeat_region 23091437..23091472 FT /rpt_family="aaat repeat" FT /rpt_type=TANDEM FT /note="homology = 88.9%, counts = 9" FT exon 23093360..23093381 FT /note="XPOUND prediction, score = 0.372" FT repeat_region 23094559..23094586 FT /rpt_type=INVERTED FT /note="IR4, 85% complementary to IR4' (77572..77599)" FT repeat_region 23095464..23095833 FT /rpt_family="THE" FT /note="83% identity: matches 1..374 of consensus" FT repeat_region 23095862..23096221 FT /rpt_family="THR" FT /note="83% identity: matches 27..395 of consensus" FT repeat_region 23095939..23095966 FT /rpt_type=INVERTED FT /note="IR4', 85% complementary to IR4 (76192..76219)" FT repeat_region 23096243..23096435 FT /rpt_family="THR" FT /note="86% identity: matches 39..232 of consensus" FT exon 23096328..23096379 FT /note="XPOUND prediction, score = 0.228" FT repeat_region 23096537..23096591 FT /rpt_family="THR" FT /note="90% identity: matches 766..819 of consensus" FT repeat_region 23096599..23097352 FT /rpt_family="THR" FT /note="81% identity: matches 406..1163 of consensus" FT exon 23096663..23096999 FT /note="GENSCAN prediction, score = 13.29" FT repeat_region 23097353..23097418 FT /rpt_family="THE" FT /note="95% identity: matches 1..66 of consensus" FT exon 23097429..23097442 FT /note="XPOUND prediction, score = 0.245" FT repeat_region 23097492..23097700 FT /rpt_family="THE" FT /note="80% identity: matches 149..356 of consensus" FT repeat_region 23101319..23101365 FT /rpt_family="THE" FT /note="91% identity: matches 45..91 of consensus" FT repeat_region 23101448..23101460 FT /note="ATTT repeat" FT exon complement(23102788..23102790) FT /note="XPOUND prediction, score = 0.217" FT exon complement(23102806..23102827) FT /note="XPOUND prediction, score = 0.222" FT exon complement(23103666..23103676) FT /note="XPOUND prediction, score = 0.303" FT exon 23105053..23105185 FT /note="MZEF prediction, score = 0.530" FT repeat_region 23105118..23105248 FT /rpt_family="L1" FT /note="90% identity: matches 7..136 of consensus" FT repeat_region 23105248..23106477 FT /rpt_family="L1" FT /note="89% identity: matches 150..1382 of consensus" FT exon 23105406..23105564 FT /note="GENSCAN prediction, score = 0.14" FT exon complement(23105753..23105814) FT /note="XPOUND prediction, score = 0.304" FT exon complement(23105849..23106003) FT /note="XPOUND prediction, score = 0.545" FT exon complement(23106448..23106459) FT /note="XPOUND prediction, score = 0.396" FT repeat_region 23106550..23111074 FT /rpt_family="L1" FT /note="93% identity: matches 1339..5869 of consensus" FT repeat_region 23107782..23107795 FT /note="CACCA repeat" FT exon 23108480..23110546 FT /note="GENSCAN prediction, score = 49.98" FT STS 23108491..23108704 FT /standard_name="WIAF-4218-STS (D11S4975), Map: 72.40, Homo FT sapiens" FT /note="GenBank Accession Number: G44370" FT repeat_region 23111096..23111218 FT /rpt_family="L1" FT /note="95% identity: matches 2301..2423 of consensus" FT repeat_region 23111218..23111272 FT /rpt_family="ataataaaata repeat" FT /rpt_type=TANDEM FT /note="homology = 81.8%, counts = 5" FT repeat_region 23111223..23111235 FT /note="ATA repeat" FT repeat_region 23111236..23111252 FT /note="AAATA repeat" FT repeat_region 23111325..23111398 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 75.7%, counts = 37" FT repeat_region 23111337..23111348 FT /note="AT repeat" FT repeat_region 23111372..23111399 FT /note="TA repeat" FT repeat_region 23111427..23111554 FT /rpt_family="L1" FT /note="85% identity: matches 157..284 of consensus" FT repeat_region complement(23111427..23111697) FT /rpt_family="ALU" FT /note="82% identity: matches 312..587 of consensus" FT exon complement(23111442..23111446) FT /note="XPOUND prediction, score = 0.235" FT exon complement(23111448..23111458) FT /note="XPOUND prediction, score = 0.218" FT repeat_region 23111613..23111695 FT /rpt_family="L1" FT /note="84% identity: matches 497..585 of consensus" FT exon complement(23111644..23111770) FT /note="MZEF prediction, score = 0.770" FT exon complement(23111696..23111705) FT /note="XPOUND prediction, score = 0.453" FT exon complement(23111711..23111735) FT /note="XPOUND prediction, score = 0.304" FT repeat_region 23112189..23112199 FT /note="CT repeat" FT repeat_region 23113262..23113527 FT /rpt_family="L1" FT /note="83% identity: matches 161..424 of consensus" FT repeat_region complement(23113279..23113536) FT /rpt_family="ALU" FT /note="88% identity: matches 525..783 of consensus" FT exon complement(23113630..23113689) FT /note="MZEF prediction, score = 0.572" FT repeat_region 23115053..23115065 FT /note="AAC repeat" FT exon complement(23115080..23115137) FT /note="GENSCAN prediction, score = 7.52" FT repeat_region 23117212..23117225 FT /note="AT repeat" FT repeat_region complement(23118759..23118905) FT /rpt_family="THE" FT /note="88% identity: matches 8..154 of consensus" FT repeat_region complement(23118968..23119010) FT /rpt_family="THE" FT /note="95% identity: matches 123..165 of consensus" FT exon complement(23119979..23119986) FT /note="XPOUND prediction, score = 0.200" FT exon complement(23120490..23120499) FT /note="XPOUND prediction, score = 0.205" FT exon complement(23120858..23120868) FT /note="XPOUND prediction, score = 0.283" FT exon complement(23121057..23121107) FT /note="XPOUND prediction, score = 0.239" FT exon complement(23121547..23121559) FT /note="XPOUND prediction, score = 0.228" FT exon complement(23123793..23123864) FT /note="MZEF prediction, score = 0.918" FT exon complement(23124329..23124473) FT /note="MZEF prediction, score = 0.595" FT repeat_region 23125092..23125104 FT /note="TA repeat" FT repeat_region 23125329..23125341 FT /note="AATA repeat" FT repeat_region complement(23126116..23126181) FT /rpt_family="L1" FT /note="89% identity: matches 260..326 of consensus" FT repeat_region complement(23126218..23126283) FT /rpt_family="L1" FT /note="90% identity: matches 52..117 of consensus" FT repeat_region complement(23126334..23126389) FT /rpt_family="L1" FT /note="100% identity: matches 210..265 of consensus" FT exon complement(23126673..23126701) FT /note="XPOUND prediction, score = 0.256" FT exon complement(23127234..23127381) FT /note="MZEF prediction, score = 0.561" FT repeat_region 23128459..23128568 FT /rpt_family="aaaaaaaaaat repeat" FT /rpt_type=TANDEM FT /note="homology = 67.3%, counts = 10" FT exon complement(23129316..23129548) FT /note="GENSCAN prediction, score = 1.25" FT exon complement(23129341..23129375) FT /note="XPOUND prediction, score = 0.449" FT repeat_region 23129996..23130244 FT /rpt_family="L1" FT /note="84% identity: matches 179..424 of consensus" FT repeat_region complement(23129996..23130250) FT /rpt_family="ALU" FT /note="87% identity: matches 305..560 of consensus" FT exon complement(23130148..23130224) FT /note="XPOUND prediction, score = 0.593" FT repeat_region 23130803..23130817 FT /note="CAAG repeat" FT repeat_region 23130998..23131427 FT /rpt_family="L1" FT /note="96% identity: matches 1551..1979 of consensus" FT repeat_region 23131449..23131583 FT /rpt_family="L1" FT /note="97% identity: matches 208..343 of consensus" FT repeat_region 23131562..23131701 FT /rpt_family="taaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 60.7%, counts = 20" FT repeat_region 23131575..23131587 FT /note="ATA repeat" FT repeat_region 23131588..23131604 FT /note="AAGAA repeat" FT exon complement(23132246..23132294) FT /note="MZEF prediction, score = 0.668" FT repeat_region 23133069..23133178 FT /rpt_family="ga repeat" FT /rpt_type=TANDEM FT /note="homology = 65.5%, counts = 55" FT repeat_region complement(23134990..23135062) FT /rpt_family="L1" FT /note="86% identity: matches 117..189 of consensus" FT repeat_region complement(23135070..23135139) FT /rpt_family="L1" FT /note="87% identity: matches 41..110 of consensus" FT repeat_region complement(23135280..23135377) FT /rpt_family="L1" FT /note="87% identity: matches 20..117 of consensus" FT exon complement(23135358..23135373) FT /note="GENSCAN prediction, score = 1.54" FT /note="XPOUND prediction, score = 0.737" FT exon 23135407..23135416 FT /note="XPOUND prediction, score = 0.258" FT repeat_region complement(23135490..23135555) FT /rpt_family="L1" FT /note="89% identity: matches 1809..1874 of consensus" FT repeat_region complement(23135909..23135966) FT /rpt_family="L1" FT /note="87% identity: matches 662..719 of consensus" FT repeat_region complement(23136012..23136192) FT /rpt_family="L1" FT /note="84% identity: matches 1813..1994 of consensus" FT repeat_region 23136386..23136511 FT /rpt_family="gctttttttttttttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 65.1%, counts = 7" FT repeat_region complement(23136504..23136588) FT /rpt_family="L1" FT /note="90% identity: matches 1486..1570 of consensus" FT exon 23137654..23137704 FT /note="XPOUND prediction, score = 0.214" FT exon 23138296..23138321 FT /note="XPOUND prediction, score = 0.287" FT repeat_region 23138386..23138429 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 75.0%, counts = 22" FT repeat_region 23138410..23138422 FT /note="ACAT repeat" FT exon 23138599..23138615 FT /note="XPOUND prediction, score = 0.202" FT repeat_region 23139077..23139087 FT /note="AC repeat" FT repeat_region 23139145..23139406 FT /rpt_family="L1" FT /note="80% identity: matches 167..424 of consensus" FT repeat_region complement(23139153..23139412) FT /rpt_family="ALU" FT /note="88% identity: matches 186..445 of consensus" FT exon 23140818..23140839 FT /note="XPOUND prediction, score = 0.218" FT exon complement(23141265..23141343) FT /note="MZEF prediction, score = 0.668" FT repeat_region 23142141..23142242 FT /rpt_family="aatatatatatttatat repeat" FT /rpt_type=TANDEM FT /note="homology = 68.6%, counts = 6" FT repeat_region 23142245..23142255 FT /note="AT repeat" FT exon complement(23142631..23142707) FT /note="MZEF prediction, score = 0.914" FT exon 23142640..23142695 FT /note="XPOUND prediction, score = 0.350" FT repeat_region complement(23144512..23144597) FT /rpt_family="THE" FT /note="89% identity: matches 131..216 of consensus" FT repeat_region complement(23144677..23144721) FT /rpt_family="THE" FT /note="93% identity: matches 117..161 of consensus" FT repeat_region complement(23144774..23144826) FT /rpt_family="THE" FT /note="90% identity: matches 1..54 of consensus" FT repeat_region complement(23144862..23144910) FT /rpt_family="THR" FT /note="93% identity: matches 1474..1522 of consensus" FT repeat_region complement(23144940..23145092) FT /rpt_family="THR" FT /note="86% identity: matches 1304..1457 of consensus" FT repeat_region complement(23145165..23145254) FT /rpt_family="THR" FT /note="87% identity: matches 558..646 of consensus" FT repeat_region complement(23145272..23145564) FT /rpt_family="THR" FT /note="86% identity: matches 782..1071 of consensus" FT repeat_region complement(23145687..23145821) FT /rpt_family="THR" FT /note="85% identity: matches 606..739 of consensus" FT repeat_region complement(23145889..23145978) FT /rpt_family="THR" FT /note="85% identity: matches 30..119 of consensus" FT repeat_region complement(23145987..23146367) FT /rpt_family="THR" FT /note="87% identity: matches 16..398 of consensus" FT repeat_region complement(23146427..23146557) FT /rpt_family="THE" FT /note="88% identity: matches 198..328 of consensus" FT exon 23146508..23146568 FT /note="GENSCAN prediction, score = 6.26" FT exon 23146518..23146547 FT /note="XPOUND prediction, score = 0.360" FT repeat_region complement(23146584..23146638) FT /rpt_family="THE" FT /note="90% identity: matches 20..74 of consensus" FT repeat_region complement(23146664..23146736) FT /rpt_family="THE" FT /note="87% identity: matches 24..96 of consensus" FT repeat_region complement(23147515..23147702) FT /rpt_family="L1" FT /note="84% identity: matches 2991..3179 of consensus" FT repeat_region complement(23147677..23147727) FT /rpt_family="L1" FT /note="92% identity: matches 911..961 of consensus" FT repeat_region complement(23147789..23147946) FT /rpt_family="L1" FT /note="87% identity: matches 1257..1414 of consensus" FT repeat_region complement(23147970..23148325) FT /rpt_family="L1" FT /note="86% identity: matches 2380..2735 of consensus" FT exon complement(23148003..23148075) FT /note="MZEF prediction, score = 0.573" FT repeat_region complement(23148358..23148705) FT /rpt_family="L1" FT /note="82% identity: matches 2009..2355 of consensus" FT repeat_region complement(23148737..23149558) FT /rpt_family="L1" FT /note="82% identity: matches 566..1385 of consensus" FT repeat_region 23149657..23149671 FT /note="TTTG repeat" FT repeat_region 23149672..23149684 FT /note="TGT repeat" FT repeat_region complement(23149703..23149913) FT /rpt_family="L1" FT /note="82% identity: matches 238..449 of consensus" FT exon 23149840..23149845 FT /note="XPOUND prediction, score = 0.208" FT exon 23149852..23149855 FT /note="XPOUND prediction, score = 0.232" FT repeat_region 23149962..23150203 FT /rpt_family="tttttattttt repeat" FT /rpt_type=TANDEM FT /note="homology = 57.4%, counts = 22" FT repeat_region complement(23150223..23150472) FT /rpt_family="L1" FT /note="82% identity: matches 669..909 of consensus" FT repeat_region complement(23150406..23150638) FT /rpt_family="L1" FT /note="82% identity: matches 155..386 of consensus" FT repeat_region complement(23150572..23151015) FT /rpt_family="L1" FT /note="82% identity: matches 139..590 of consensus" FT repeat_region complement(23150969..23151140) FT /rpt_family="L1" FT /note="82% identity: matches 1..172 of consensus" FT exon complement(23151118..23151200) FT /note="MZEF prediction, score = 0.888" FT repeat_region complement(23151690..23151924) FT /rpt_family="L1" FT /note="84% identity: matches 77..318 of consensus" FT repeat_region complement(23152209..23152289) FT /rpt_family="L1" FT /note="88% identity: matches 87..170 of consensus" FT repeat_region 23152733..23152795 FT /rpt_family="MER43" FT /note="88% identity: matches 37..99 of consensus" FT exon 23152751..23152784 FT /note="XPOUND prediction, score = 0.239" FT STS 23152868..23153108 FT /standard_name="SHGC-12260 (D7S467), Map: 9, Homo sapiens" FT /note="GenBank Accession Number: G17363" FT repeat_region 23152881..23152947 FT /rpt_family="MER43" FT /note="86% identity: matches 84..150 of consensus" FT exon 23154854..23154925 FT /note="GENSCAN prediction, score = 5.26" FT exon 23154880..23154925 FT /note="MZEF prediction, score = 0.629" FT exon complement(23155097..23155157) FT /note="XPOUND prediction, score = 0.361" FT exon complement(23155217..23155247) FT /note="XPOUND prediction, score = 0.324" FT exon 23155786..23155867 FT /note="MZEF prediction, score = 0.556" FT exon 23155865..23155971 FT /note="GENSCAN prediction, score = 0.09" FT exon complement(23156713..23156726) FT /note="XPOUND prediction, score = 0.290" FT exon complement(23158146..23158158) FT /note="XPOUND prediction, score = 0.221" FT repeat_region 23159098..23159111 FT /note="TTTC repeat" FT repeat_region complement(23159289..23159392) FT /rpt_family="ALU" FT /note="82% identity: matches 15..118 of consensus" FT exon complement(23159307..23159463) FT /note="MZEF prediction, score = 0.879" FT repeat_region 23159435..23159465 FT /note="TC repeat" FT repeat_region 23159435..23159504 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 78.6%, counts = 35" FT repeat_region 23159465..23159483 FT /rpt_type=INVERTED FT /note="IR5, 100% complementary to IR5' (141119..141137)" FT repeat_region 23159466..23159504 FT /note="AT repeat" FT repeat_region 23159486..23159504 FT /rpt_type=INVERTED FT /note="IR5', 100% complementary to IR5 (141098..141116)" FT repeat_region 23159506..23159539 FT /note="AC repeat" FT repeat_region 23162165..23162251 FT /rpt_type=INVERTED FT /note="IR6, 93% complementary to IR6' (145080..145166)" FT exon complement(23162647..23162683) FT /note="XPOUND prediction, score = 0.235" FT exon complement(23162767..23162789) FT /note="XPOUND prediction, score = 0.238" FT exon complement(23163359..23163417) FT /note="XPOUND prediction, score = 0.224" FT repeat_region 23163447..23163533 FT /rpt_type=INVERTED FT /note="IR6', 93% complementary to IR6 (143798..143884)" FT exon 23164078..23164143 FT /note="GENSCAN prediction, score = 4.52" FT repeat_region 23164223..23164266 FT /rpt_family="ag repeat" FT /rpt_type=TANDEM FT /note="homology = 93.2%, counts = 22" FT repeat_region 23164229..23164259 FT /note="AG repeat" FT repeat_region complement(23164293..23164364) FT /rpt_family="MER43" FT /note="93% identity: matches 44..116 of consensus" FT exon 23164511..23164673 FT /note="GENSCAN prediction, score = 1.83" FT repeat_region 23165015..23165205 FT /rpt_family="L1" FT /note="83% identity: matches 78..267 of consensus" FT repeat_region 23165343..23165409 FT /rpt_family="L1" FT /note="89% identity: matches 252..318 of consensus" FT repeat_region 23165990..23166126 FT /rpt_family="L1" FT /note="82% identity: matches 68..204 of consensus" FT repeat_region 23166241..23166255 FT /note="AAATG repeat" FT repeat_region 23166323..23166475 FT /rpt_family="L1" FT /note="83% identity: matches 379..534 of consensus" FT repeat_region 23166489..23166726 FT /rpt_family="L1" FT /note="81% identity: matches 181..423 of consensus" FT repeat_region 23167053..23167122 FT /rpt_family="L1" FT /note="87% identity: matches 42..111 of consensus" FT repeat_region 23167143..23167275 FT /rpt_family="L1" FT /note="85% identity: matches 486..618 of consensus" FT repeat_region 23167446..23167494 FT /rpt_family="L1" FT /note="95% identity: matches 362..410 of consensus" FT repeat_region 23167697..23167778 FT /rpt_family="L1" FT /note="89% identity: matches 808..889 of consensus" FT repeat_region 23167823..23167877 FT /rpt_family="L1" FT /note="92% identity: matches 761..815 of consensus" FT repeat_region 23167987..23168248 FT /rpt_family="L1" FT /note="82% identity: matches 1104..1365 of consensus" FT repeat_region 23168379..23168459 FT /rpt_family="L1" FT /note="90% identity: matches 1490..1570 of consensus" FT repeat_region 23168468..23168543 FT /rpt_family="L1" FT /note="85% identity: matches 68..147 of consensus" FT repeat_region 23168547..23168883 FT /rpt_family="L1" FT /note="84% identity: matches 1655..1989 of consensus" FT repeat_region 23169297..23169312 FT /note="AATG repeat" FT repeat_region 23169980..23170051 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 65.3%, counts = 36" FT exon complement(23170924..23170949) FT /note="XPOUND prediction, score = 0.281" FT repeat_region 23171128..23171415 FT /rpt_family="ALU" FT /note="89% identity: matches 144..431 of consensus" FT repeat_region complement(23171139..23171415) FT /rpt_family="L1" FT /note="86% identity: matches 242..516 of consensus" FT exon complement(23171610..23171672) FT /note="XPOUND prediction, score = 0.281" FT repeat_region 23172067..23172078 FT /note="ATC repeat" FT exon complement(23172449..23172539) FT /note="MZEF prediction, score = 0.937" FT repeat_region 23173974..23174021 FT /rpt_family="atg repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 16" FT exon complement(23173974..23174038) FT /note="XPOUND prediction, score = 0.785" FT exon 23173981..23174027 FT /note="MZEF prediction, score = 0.576" FT repeat_region 23173993..23174021 FT /note="TGA repeat" FT repeat_region 23174353..23174448 FT /rpt_family="L1" FT /note="86% identity: matches 245..340 of consensus" FT repeat_region complement(23174368..23174600) FT /rpt_family="ALU" FT /note="86% identity: matches 31..263 of consensus" FT repeat_region 23174508..23174599 FT /rpt_family="L1" FT /note="90% identity: matches 400..490 of consensus" FT exon complement(23175687..23175700) FT /note="XPOUND prediction, score = 0.619" FT repeat_region 23175781..23175852 FT /rpt_family="ag repeat" FT /rpt_type=TANDEM FT /note="homology = 88.9%, counts = 36" FT repeat_region 23175790..23175841 FT /note="GA repeat" FT exon complement(23176584..23176599) FT /note="XPOUND prediction, score = 0.217" FT exon 23177191..23177218 FT /note="XPOUND prediction, score = 0.728" FT repeat_region 23179809..23179823 FT /note="AAACC repeat" FT repeat_region complement(23180078..23180188) FT /rpt_family="ALU" FT /note="90% identity: matches 939..1049 of consensus" FT repeat_region complement(23180153..23180261) FT /rpt_family="ALU" FT /note="84% identity: matches 76..187 of consensus" FT repeat_region 23180154..23180268 FT /rpt_family="L1" FT /note="82% identity: matches 748..864 of consensus" FT repeat_region complement(23180235..23180330) FT /rpt_family="ALU" FT /note="84% identity: matches 10..105 of consensus" FT exon complement(23180470..23180483) FT /note="XPOUND prediction, score = 0.273" FT exon complement(23180867..23180994) FT /note="XPOUND prediction, score = 0.930" FT exon 23181168..23181223 FT /note="GENSCAN prediction, score = 2.28" FT /note="MZEF prediction, score = 0.599" FT repeat_region 23182118..23182130 FT /note="AAAG repeat" FT exon 23182235..23182295 FT /note="MZEF prediction, score = 0.642" FT repeat_region 23183237..23183290 FT /rpt_family="ALU" FT /note="88% identity: matches 24..77 of consensus" FT repeat_region 23183272..23183327 FT /rpt_family="ALU" FT /note="89% identity: matches 678..733 of consensus" FT repeat_region 23183336..23183348 FT /note="AAT repeat" FT exon complement(23183783..23183801) FT /note="XPOUND prediction, score = 0.243" FT exon complement(23184400..23184416) FT /note="XPOUND prediction, score = 0.436" FT exon complement(23184862..23184958) FT /note="XPOUND prediction, score = 0.391" FT exon complement(23185301..23185333) FT /note="MZEF prediction, score = 0.573" FT exon 23186730..23186815 FT /note="MZEF prediction, score = 0.512" FT repeat_region 23188806..23188851 FT /note="GATA repeat" FT repeat_region 23188806..23188877 FT /rpt_family="gata repeat" FT /rpt_type=TANDEM FT /note="homology = 90.3%, counts = 18" FT exon complement(23189322..23189365) FT /note="XPOUND prediction, score = 0.664" FT repeat_region complement(23342600..23342827) FT /rpt_family="attttttttttccttttct repeat" FT /rpt_type=TANDEM FT /note="homology = 61.0%, counts = 12" FT repeat_region complement(23342273..23342296) FT /rpt_type=INVERTED FT /note="IR1, 87% complementary to IR1' (2073..2096)" FT exon complement(23341523..23341676) FT /note="MZEF prediction, score = 0.938" FT exon complement(23341523..23341575) FT /note="XPOUND prediction, score = 0.468" FT exon complement(23341159..23341162) FT /note="XPOUND prediction, score = 0.207" FT repeat_region 23340954..23341008 FT /rpt_family="THE" FT /note="89% identity: matches 295..349 of consensus" FT repeat_region 23340904..23340967 FT /rpt_family="THE" FT /note="90% identity: matches 81..144 of consensus" FT exon complement(23340905..23340923) FT /note="XPOUND prediction, score = 0.230" FT repeat_region complement(23340772..23340795) FT /rpt_type=INVERTED FT /note="IR1', 87% complementary to IR1 (572..595)" FT repeat_region complement(23340634..23340652) FT /note="AG repeat" FT exon complement(23339567..23339697) FT /note="MZEF prediction, score = 0.638" FT repeat_region complement(23339664..23339675) FT /note="TAA repeat" FT repeat_region complement(23339581..23339655) FT /rpt_family="gtagcagtaatagca repeat" FT /rpt_type=TANDEM FT /note="homology = 76.0%, counts = 5" FT repeat_region complement(23339418..23339461) FT /rpt_family="taca repeat" FT /rpt_type=TANDEM FT /note="homology = 97.7%, counts = 11" FT repeat_region complement(23339416..23339461) FT /note="TACA repeat" FT repeat_region complement(23337878..23337971) FT /rpt_family="THE" FT /note="85% identity: matches 9..102 of consensus" FT exon complement(23337657..23337678) FT /note="XPOUND prediction, score = 0.225" FT repeat_region complement(23337543..23337597) FT /rpt_family="THE" FT /note="90% identity: matches 139..192 of consensus" FT repeat_region complement(23337438..23337450) FT /note="TTA repeat" FT repeat_region 23337316..23337446 FT /rpt_family="L1" FT /note="96% identity: matches 408..538 of consensus" FT exon complement(23337409..23337418) FT /note="XPOUND prediction, score = 0.212" FT repeat_region 23336536..23337287 FT /rpt_family="L1" FT /note="95% identity: matches 5082..5833 of consensus" FT exon 23335862..23335956 FT /note="MZEF prediction, score = 0.916" FT repeat_region complement(23335806..23335856) FT /rpt_type=INVERTED FT /note="IR2, 80% complementary to IR2' (7065..7115)" FT repeat_region complement(23335735..23335838) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 83.7%, counts = 52" FT repeat_region complement(23335819..23335830) FT /note="GT repeat" FT repeat_region complement(23335788..23335818) FT /note="AT repeat" FT repeat_region complement(23335753..23335803) FT /rpt_type=INVERTED FT /note="IR2', 80% complementary to IR2 (7012..7062)" FT repeat_region complement(23335768..23335778) FT /note="AT repeat" FT repeat_region complement(23335754..23335764) FT /note="AT repeat" FT repeat_region complement(23335735..23335750) FT /note="AT repeat" FT repeat_region complement(23335589..23335682) FT /rpt_family="L1" FT /note="89% identity: matches 193..286 of consensus" FT repeat_region 23335433..23335682 FT /rpt_family="ALU" FT /note="84% identity: matches 1..248 of consensus" FT exon complement(23335668..23335680) FT /note="XPOUND prediction, score = 0.252" FT exon complement(23335590..23335629) FT /note="XPOUND prediction, score = 0.293" FT repeat_region complement(23335171..23335183) FT /note="ACAT repeat" FT repeat_region 23334768..23334828 FT /rpt_family="L1" FT /note="88% identity: matches 64..125 of consensus" FT repeat_region 23334604..23334682 FT /rpt_family="L1" FT /note="88% identity: matches 31..108 of consensus" FT repeat_region 23334450..23334507 FT /rpt_family="L1" FT /note="93% identity: matches 359..417 of consensus" FT repeat_region 23334151..23334221 FT /rpt_family="L1" FT /note="91% identity: matches 5364..5434 of consensus" FT repeat_region 23334094..23334145 FT /rpt_family="L1" FT /note="92% identity: matches 52..103 of consensus" FT repeat_region 23333924..23334011 FT /rpt_family="L1" FT /note="87% identity: matches 491..578 of consensus" FT repeat_region complement(23332002..23332039) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 92.1%, counts = 19" FT repeat_region complement(23332005..23332035) FT /note="AC repeat" FT repeat_region complement(23331555..23331666) FT /rpt_family="gtttttctttattt repeat" FT /rpt_type=TANDEM FT /note="homology = 67.0%, counts = 8" FT exon complement(23331408..23331453) FT /note="XPOUND prediction, score = 0.443" FT repeat_region 23331274..23331304 FT /rpt_family="THE" FT /note="100% identity: matches 29..59 of consensus" FT repeat_region 23330980..23331035 FT /rpt_family="THR" FT /note="92% identity: matches 843..898 of consensus" FT repeat_region 23330901..23330950 FT /rpt_family="THR" FT /note="92% identity: matches 128..177 of consensus" FT repeat_region 23330728..23330825 FT /rpt_family="THR" FT /note="86% identity: matches 1246..1341 of consensus" FT exon 23330171..23330699 FT /note="GENSCAN prediction, score = 16.44" FT repeat_region 23330522..23330669 FT /rpt_family="THR" FT /note="85% identity: matches 918..1064 of consensus" FT repeat_region 23330371..23330465 FT /rpt_family="THR" FT /note="86% identity: matches 409..503 of consensus" FT exon complement(23330197..23330313) FT /note="XPOUND prediction, score = 0.522" FT repeat_region 23329751..23330118 FT /rpt_family="THR" FT /note="79% identity: matches 1..368 of consensus" FT repeat_region 23329607..23329882 FT /rpt_family="THR" FT /note="83% identity: matches 105..380 of consensus" FT exon 23329620..23329744 FT /note="GENSCAN prediction, score = 0.89" FT repeat_region 23329500..23329688 FT /rpt_family="THR" FT /note="82% identity: matches 3..191 of consensus" FT repeat_region 23329349..23329497 FT /rpt_family="THE" FT /note="83% identity: matches 273..421 of consensus" FT repeat_region 23328831..23328986 FT /rpt_family="ALU" FT /note="98% identity: matches 133..288 of consensus" FT repeat_region complement(23328831..23328986) FT /rpt_family="L1" FT /note="86% identity: matches 245..393 of consensus" FT misc_feature complement(23328696..23328982) FT /note="CpG_island (%GC=61.0, o/e=0.82, #CpGs=23)" FT repeat_region 23328693..23328818 FT /rpt_family="ALU" FT /note="98% identity: matches 413..538 of consensus" FT repeat_region complement(23328693..23328818) FT /rpt_family="L1" FT /note="92% identity: matches 401..526 of consensus" FT repeat_region complement(23327817..23327918) FT /rpt_family="attttt repeat" FT /rpt_type=TANDEM FT /note="homology = 62.7%, counts = 17" FT exon complement(23327153..23327168) FT /note="XPOUND prediction, score = 0.401" FT exon complement(23326358..23326370) FT /note="XPOUND prediction, score = 0.216" FT exon complement(23323707..23323729) FT /note="XPOUND prediction, score = 0.362" FT exon 23322825..23322893 FT /note="MZEF prediction, score = 0.823" FT exon complement(23322635..23322671) FT /note="XPOUND prediction, score = 0.349" FT exon 23320535..23320600 FT /note="MZEF prediction, score = 0.539" FT repeat_region complement(23320157..23320236) FT /rpt_family="tttttcct repeat" FT /rpt_type=TANDEM FT /note="homology = 67.5%, counts = 10" FT exon complement(23319853..23319888) FT /note="XPOUND prediction, score = 0.269" FT repeat_region complement(23317372..23317963) FT /rpt_family="L1" FT /note="89% identity: matches 840..1441 of consensus" FT repeat_region complement(23316750..23316926) FT /rpt_family="ALU" FT /note="87% identity: matches 951..1129 of consensus" FT repeat_region 23316750..23316925 FT /rpt_family="L1" FT /note="84% identity: matches 169..344 of consensus" FT repeat_region complement(23315270..23315287) FT /note="AT repeat" FT exon complement(23314103..23314127) FT /note="XPOUND prediction, score = 0.325" FT exon complement(23310284..23310329) FT /note="XPOUND prediction, score = 0.333" FT repeat_region complement(23309967..23309996) FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 15" FT repeat_region complement(23309967..23309996) FT /note="CA repeat" FT exon complement(23309648..23309660) FT /note="XPOUND prediction, score = 0.265" FT exon complement(23309554..23309567) FT /note="XPOUND prediction, score = 0.257" FT repeat_region complement(23309489..23309540) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 80.8%, counts = 26" FT repeat_region complement(23309380..23309501) FT /rpt_type=INVERTED FT /note="IR3, 76% complementary to IR3' (33494..33614)" FT repeat_region complement(23309425..23309488) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 76.6%, counts = 32" FT repeat_region complement(23309254..23309374) FT /rpt_type=INVERTED FT /note="IR3', 76% complementary to IR3 (33367..33488)" FT repeat_region complement(23309173..23309334) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 72.2%, counts = 81" FT repeat_region complement(23309211..23309221) FT /note="TG repeat" FT repeat_region complement(23309192..23309210) FT /note="AT repeat" FT exon complement(23308886..23308961) FT /note="MZEF prediction, score = 0.902" FT exon complement(23307044..23307056) FT /note="XPOUND prediction, score = 0.391" FT repeat_region complement(23306181..23306225) FT /rpt_type=INVERTED FT /note="IR4, 95% complementary to IR4' (36698..36742)" FT repeat_region complement(23306126..23306170) FT /rpt_type=INVERTED FT /note="IR4', 95% complementary to IR4 (36643..36687)" FT repeat_region complement(23306114..23306128) FT /note="AAAG repeat" FT exon complement(23304843..23304902) FT /note="MZEF prediction, score = 0.650" FT exon 23302496..23302599 FT /note="MZEF prediction, score = 0.866" FT repeat_region complement(23302200..23302267) FT /rpt_family="THE" FT /note="86% identity: matches 66..133 of consensus" FT repeat_region complement(23302166..23302199) FT /rpt_family="THE" FT /note="97% identity: matches 1..34 of consensus" FT repeat_region complement(23302064..23302094) FT /rpt_family="THE" FT /note="100% identity: matches 45..75 of consensus" FT repeat_region complement(23301955..23302070) FT /rpt_family="THE" FT /note="87% identity: matches 108..224 of consensus" FT repeat_region complement(23301630..23301785) FT /rpt_family="tatattaatataa repeat" FT /rpt_type=TANDEM FT /note="homology = 63.5%, counts = 12" FT repeat_region complement(23301644..23301655) FT /note="TA repeat" FT exon complement(23301569..23301620) FT /note="MZEF prediction, score = 0.986" FT repeat_region complement(23301507..23301517) FT /note="AC repeat" FT repeat_region complement(23300353..23300424) FT /rpt_family="ga repeat" FT /rpt_type=TANDEM FT /note="homology = 69.4%, counts = 36" FT repeat_region 23299990..23300236 FT /rpt_family="L1" FT /note="84% identity: matches 182..423 of consensus" FT repeat_region complement(23299973..23300230) FT /rpt_family="ALU" FT /note="88% identity: matches 22..279 of consensus" FT repeat_region complement(23299935..23299949) FT /note="AAAG repeat" FT repeat_region complement(23298319..23298336) FT /note="AT repeat" FT exon 23295229..23295328 FT /note="MZEF prediction, score = 0.881" FT repeat_region complement(23295047..23295172) FT /rpt_family="ctatcttttttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 65.9%, counts = 9" FT exon 23294934..23295063 FT /note="MZEF prediction, score = 0.723" FT repeat_region complement(23293267..23293314) FT /rpt_family="tatataca repeat" FT /rpt_type=TANDEM FT /note="homology = 81.2%, counts = 6" FT exon 23292696..23292833 FT /note="MZEF prediction, score = 0.742" FT exon 23291483..23291583 FT /note="MZEF prediction, score = 0.929" FT exon complement(23291341..23291385) FT /note="MZEF prediction, score = 0.509" FT exon complement(23291064..23291079) FT /note="XPOUND prediction, score = 0.403" FT exon complement(23290686..23290783) FT /note="XPOUND prediction, score = 0.775" FT repeat_region 23289561..23289830 FT /rpt_family="ALU" FT /note="90% identity: matches 5..274 of consensus" FT repeat_region complement(23289554..23289830) FT /rpt_family="L1" FT /note="88% identity: matches 245..522 of consensus" FT exon complement(23288050..23288065) FT /note="XPOUND prediction, score = 0.324" FT exon 23287599..23287613 FT /note="XPOUND prediction, score = 0.236" FT repeat_region complement(23287463..23287484) FT /note="TTTG repeat" FT repeat_region complement(23286996..23287095) FT /rpt_family="L1" FT /note="84% identity: matches 562..661 of consensus" FT exon complement(23286919..23286967) FT /note="MZEF prediction, score = 0.537" FT repeat_region complement(23286575..23286628) FT /rpt_family="aaaagtaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 77.8%, counts = 6" FT repeat_region complement(23286475..23286564) FT /rpt_family="L1" FT /note="84% identity: matches 78..168 of consensus" FT repeat_region complement(23286418..23286501) FT /rpt_family="L1" FT /note="86% identity: matches 274..361 of consensus" FT exon 23284990..23285040 FT /note="XPOUND prediction, score = 0.722" FT exon 23284240..23284352 FT /note="MZEF prediction, score = 0.960" FT repeat_region complement(23284101..23284242) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 71.8%, counts = 71" FT repeat_region complement(23284211..23284231) FT /note="AT repeat" FT exon complement(23283389..23283419) FT /note="XPOUND prediction, score = 0.678" FT repeat_region 23281860..23282075 FT /rpt_family="L1" FT /note="81% identity: matches 302..516 of consensus" FT repeat_region complement(23281800..23282075) FT /rpt_family="ALU" FT /note="83% identity: matches 10..282 of consensus" FT exon 23280518..23280548 FT /note="XPOUND prediction, score = 0.217" FT repeat_region complement(23280004..23280035) FT /rpt_type=INVERTED FT /note="IR5, 100% complementary to IR5' (62867..62897)" FT repeat_region complement(23279994..23280007) FT /note="AT repeat" FT repeat_region complement(23279971..23280001) FT /rpt_type=INVERTED FT /note="IR5', 100% complementary to IR5 (62833..62864)" FT repeat_region complement(23279834..23279844) FT /note="AT repeat" FT exon complement(23279233..23279258) FT /note="XPOUND prediction, score = 0.289" FT repeat_region 23278100..23278148 FT /rpt_family="ALU" FT /note="92% identity: matches 943..992 of consensus" FT repeat_region complement(23277963..23278117) FT /rpt_family="L1" FT /note="84% identity: matches 269..418 of consensus" FT repeat_region 23277954..23278117 FT /rpt_family="ALU" FT /note="86% identity: matches 468..629 of consensus" FT repeat_region complement(23276706..23276739) FT /note="TG repeat" FT repeat_region complement(23276672..23276739) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 82.4%, counts = 34" FT exon complement(23274178..23274203) FT /note="XPOUND prediction, score = 0.254" FT repeat_region complement(23274057..23274081) FT /rpt_type=INVERTED FT /note="IR6, 88% complementary to IR6' (68834..68858)" FT repeat_region complement(23274010..23274034) FT /rpt_type=INVERTED FT /note="IR6', 88% complementary to IR6 (68787..68811)" FT exon 23273967..23273976 FT /note="XPOUND prediction, score = 0.457" FT repeat_region complement(23272987..23273000) FT /note="ACTGG repeat" FT repeat_region complement(23271178..23272591) FT /rpt_family="L1" FT /note="87% identity: matches 1591..3013 of consensus" FT exon complement(23271326..23271490) FT /note="MZEF prediction, score = 0.843" FT exon 23270588..23270625 FT /note="XPOUND prediction, score = 0.613" FT exon complement(23269731..23269767) FT /note="XPOUND prediction, score = 0.441" FT exon complement(23268967..23269024) FT /note="XPOUND prediction, score = 0.323" FT exon complement(23267640..23267679) FT /note="XPOUND prediction, score = 0.275" FT repeat_region complement(23267156..23267169) FT /note="AACA repeat" FT repeat_region complement(23265738..23265800) FT /rpt_family="L1" FT /note="87% identity: matches 160..222 of consensus" FT repeat_region 23265673..23265794 FT /rpt_family="ALU" FT /note="84% identity: matches 153..273 of consensus" FT repeat_region complement(23265541..23265646) FT /rpt_family="L1" FT /note="85% identity: matches 469..575 of consensus" FT repeat_region 23265520..23265646 FT /rpt_family="ALU" FT /note="91% identity: matches 1..127 of consensus" FT repeat_region complement(23264394..23264483) FT /rpt_family="tttttatatt repeat" FT /rpt_type=TANDEM FT /note="homology = 66.7%, counts = 9" FT repeat_region complement(23264396..23264416) FT /note="TTAT repeat" FT repeat_region 23264218..23264327 FT /rpt_family="ALU" FT /note="82% identity: matches 937..1046 of consensus" FT repeat_region 23264069..23264254 FT /rpt_family="ALU" FT /note="82% identity: matches 2..185 of consensus" FT repeat_region complement(23264180..23264246) FT /rpt_family="L1" FT /note="86% identity: matches 264..330 of consensus" FT repeat_region complement(23264083..23264200) FT /rpt_family="L1" FT /note="84% identity: matches 464..581 of consensus" FT exon complement(23260530..23260597) FT /note="MZEF prediction, score = 0.594" FT repeat_region 23260208..23260475 FT /rpt_family="ALU" FT /note="94% identity: matches 308..575 of consensus" FT repeat_region complement(23260203..23260475) FT /rpt_family="L1" FT /note="90% identity: matches 253..526 of consensus" FT repeat_region complement(23259852..23259923) FT /rpt_family="THE" FT /note="88% identity: matches 1..72 of consensus" FT repeat_region complement(23259610..23259793) FT /rpt_family="THE" FT /note="86% identity: matches 41..224 of consensus" FT repeat_region 23257087..23257215 FT /rpt_family="L1" FT /note="97% identity: matches 1173..1301 of consensus" FT repeat_region 23256966..23257061 FT /rpt_family="L1" FT /note="97% identity: matches 289..384 of consensus" FT exon complement(23254103..23254188) FT /note="XPOUND prediction, score = 0.629" FT repeat_region complement(23253345..23253388) FT /rpt_family="ttta repeat" FT /rpt_type=TANDEM FT /note="homology = 77.3%, counts = 11" FT repeat_region complement(23253370..23253384) FT /note="TTTG repeat" FT repeat_region 23253208..23253357 FT /rpt_family="L1" FT /note="85% identity: matches 263..416 of consensus" FT repeat_region 23253034..23253157 FT /rpt_family="L1" FT /note="88% identity: matches 392..516 of consensus" FT repeat_region 23252901..23253003 FT /rpt_family="L1" FT /note="90% identity: matches 3561..3663 of consensus" FT repeat_region 23252687..23252901 FT /rpt_family="L1" FT /note="91% identity: matches 1138..1352 of consensus" FT repeat_region 23249479..23252683 FT /rpt_family="L1" FT /note="87% identity: matches 2573..5788 of consensus" FT STS complement(23251688..23251858) FT /standard_name="D11S1053 (D7S2408), Map: 22qter, Homo FT sapiens" FT /note="GenBank Accession Number: G28812" FT repeat_region 23248306..23249482 FT /rpt_family="L1" FT /note="88% identity: matches 3..1177 of consensus" FT exon 23249100..23249408 FT /note="GENSCAN prediction, score = 11.15" FT repeat_region 23248054..23248150 FT /rpt_family="L1" FT /note="90% identity: matches 126..221 of consensus" FT repeat_region 23247440..23248026 FT /rpt_family="L1" FT /note="84% identity: matches 1..590 of consensus" FT repeat_region 23247215..23247299 FT /rpt_family="THE" FT /note="88% identity: matches 112..197 of consensus" FT repeat_region 23247146..23247208 FT /rpt_family="THE" FT /note="87% identity: matches 209..271 of consensus" FT repeat_region 23246961..23247003 FT /rpt_family="THE" FT /note="95% identity: matches 21..63 of consensus" FT exon complement(23246142..23246166) FT /note="XPOUND prediction, score = 0.314" FT exon 23245888..23246026 FT /note="GENSCAN prediction, score = 0.75" FT repeat_region complement(23245803..23245831) FT /rpt_type=INVERTED FT /note="IR7, 93% complementary to IR7' (97073..97101)" FT repeat_region complement(23245767..23245795) FT /rpt_type=INVERTED FT /note="IR7', 93% complementary to IR7 (97037..97065)" FT exon complement(23245010..23245132) FT /note="MZEF prediction, score = 0.573" FT exon 23245024..23245068 FT /note="MZEF prediction, score = 0.903" FT repeat_region 23243044..23243303 FT /rpt_family="ALU" FT /note="83% identity: matches 11..270 of consensus" FT repeat_region complement(23243031..23243162) FT /rpt_family="L1" FT /note="89% identity: matches 467..598 of consensus" FT repeat_region 23242815..23242916 FT /rpt_family="L1" FT /note="86% identity: matches 10..107 of consensus" FT exon complement(23242562..23242582) FT /note="XPOUND prediction, score = 0.332" FT repeat_region 23242390..23242517 FT /rpt_family="L1" FT /note="82% identity: matches 1805..1934 of consensus" FT repeat_region 23242151..23242212 FT /rpt_family="L1" FT /note="91% identity: matches 3982..4043 of consensus" FT repeat_region 23242116..23242181 FT /rpt_family="L1" FT /note="89% identity: matches 789..855 of consensus" FT repeat_region 23241867..23241913 FT /rpt_family="L1" FT /note="93% identity: matches 1243..1289 of consensus" FT repeat_region 23241451..23241572 FT /rpt_family="L1" FT /note="86% identity: matches 3549..3670 of consensus" FT repeat_region 23240470..23240623 FT /rpt_family="L1" FT /note="81% identity: matches 470..623 of consensus" FT repeat_region complement(23238933..23239072) FT /rpt_family="atttctttct repeat" FT /rpt_type=TANDEM FT /note="homology = 62.1%, counts = 14" FT exon complement(23238639..23238652) FT /note="XPOUND prediction, score = 0.461" FT repeat_region complement(23238297..23238309) FT /note="TGG repeat" FT exon complement(23237884..23237918) FT /note="XPOUND prediction, score = 0.456" FT repeat_region complement(23237600..23237715) FT /rpt_family="attt repeat" FT /rpt_type=TANDEM FT /note="homology = 60.3%, counts = 29" FT repeat_region 23235020..23235064 FT /rpt_family="ALU" FT /note="93% identity: matches 148..192 of consensus" FT repeat_region 23234874..23234958 FT /rpt_family="ALU" FT /note="89% identity: matches 320..404 of consensus" FT repeat_region complement(23234880..23234928) FT /rpt_family="L1" FT /note="93% identity: matches 376..424 of consensus" FT repeat_region complement(23234175..23234208) FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 17" FT repeat_region complement(23234175..23234208) FT /note="CA repeat" FT repeat_region complement(23234106..23234142) FT /rpt_family="ALU" FT /note="97% identity: matches 514..550 of consensus" FT exon complement(23233870..23233883) FT /note="XPOUND prediction, score = 0.262" FT repeat_region complement(23233562..23233634) FT /rpt_type=INVERTED FT /note="IR8, 98% complementary to IR8' (109665..109736)" FT repeat_region complement(23233132..23233203) FT /rpt_type=INVERTED FT /note="IR8', 98% complementary to IR8 (109234..109306)" FT repeat_region complement(23231870..23231884) FT /note="CCAAA repeat" FT exon 23230137..23230362 FT /note="GENSCAN prediction, score = 6.82" FT exon complement(23230239..23230294) FT /note="XPOUND prediction, score = 0.261" FT exon 23229894..23230002 FT /note="GENSCAN prediction, score = 6.93" FT exon complement(23229917..23229976) FT /note="XPOUND prediction, score = 0.348" FT repeat_region complement(23228856..23228874) FT /note="TA repeat" FT repeat_region complement(23228620..23228634) FT /note="CTT repeat" FT repeat_region complement(23228339..23228606) FT /rpt_family="L1" FT /note="86% identity: matches 160..425 of consensus" FT repeat_region 23228340..23228605 FT /rpt_family="ALU" FT /note="88% identity: matches 14..278 of consensus" FT exon complement(23226734..23226774) FT /note="XPOUND prediction, score = 0.361" FT exon 23226047..23226144 FT /note="MZEF prediction, score = 0.845" FT repeat_region 23225687..23226117 FT /rpt_family="L1" FT /note="89% identity: matches 3489..3920 of consensus" FT exon complement(23225831..23225892) FT /note="XPOUND prediction, score = 0.652" FT repeat_region 23225533..23225687 FT /rpt_family="L1" FT /note="87% identity: matches 1322..1474 of consensus" FT misc_feature complement(23225249..23225533) FT /note="CpG_island (%GC=62.8, o/e=0.83, #CpGs=25)" FT repeat_region 23225245..23225533 FT /rpt_family="L1" FT /note="90% identity: matches 245..527 of consensus" FT repeat_region complement(23225245..23225532) FT /rpt_family="ALU" FT /note="99% identity: matches 1..288 of consensus" FT repeat_region complement(23225220..23225532) FT /rpt_type=INVERTED FT /note="IR9, 89% complementary to IR9' (118206..118512)" FT repeat_region 23224671..23225215 FT /rpt_family="L1" FT /note="88% identity: matches 2896..3438 of consensus" FT repeat_region complement(23224647..23224665) FT /note="TTTTC repeat" FT repeat_region complement(23224356..23224662) FT /rpt_type=INVERTED FT /note="IR9', 89% complementary to IR9 (117336..117648)" FT repeat_region 23224356..23224636 FT /rpt_family="ALU" FT /note="90% identity: matches 1..282 of consensus" FT repeat_region complement(23224361..23224614) FT /rpt_family="L1" FT /note="88% identity: matches 267..521 of consensus" FT exon 23224411..23224475 FT /note="XPOUND prediction, score = 0.565" FT repeat_region complement(23223160..23224339) FT /rpt_family="L1" FT /note="89% identity: matches 229..1415 of consensus" FT exon complement(23223786..23224003) FT /note="GENSCAN prediction, score = 8.61" FT repeat_region complement(23222950..23223267) FT /rpt_family="L1" FT /note="84% identity: matches 12..327 of consensus" FT exon complement(23223095..23223249) FT /note="GENSCAN prediction, score = 1.49" FT exon 23220727..23220743 FT /note="XPOUND prediction, score = 0.221" FT exon 23219564..23219729 FT /note="XPOUND prediction, score = 0.416" FT exon complement(23219215..23219315) FT /note="GENSCAN prediction, score = 3.71" FT repeat_region complement(23219293..23219307) FT /note="CCAA repeat" FT exon 23219279..23219291 FT /note="XPOUND prediction, score = 0.230" FT repeat_region complement(23217667..23217709) FT /rpt_family="L1" FT /note="93% identity: matches 2..44 of consensus" FT repeat_region complement(23217605..23217621) FT /note="TATT repeat" FT repeat_region complement(23217466..23217602) FT /rpt_family="L1" FT /note="87% identity: matches 161..297 of consensus" FT repeat_region 23217455..23217602 FT /rpt_family="ALU" FT /note="89% identity: matches 425..572 of consensus" FT repeat_region complement(23217379..23217443) FT /rpt_family="L1" FT /note="90% identity: matches 54..118 of consensus" FT repeat_region complement(23215819..23215879) FT /rpt_family="ALU" FT /note="90% identity: matches 219..279 of consensus" FT exon complement(23215745..23215782) FT /note="XPOUND prediction, score = 0.352" FT exon 23215044..23215172 FT /note="MZEF prediction, score = 0.515" FT repeat_region 23214602..23214676 FT /rpt_family="ALU" FT /note="90% identity: matches 624..698 of consensus" FT repeat_region complement(23214579..23214670) FT /rpt_family="L1" FT /note="85% identity: matches 167..258 of consensus" FT repeat_region 23214571..23214618 FT /rpt_family="ALU" FT /note="91% identity: matches 826..873 of consensus" FT repeat_region 23214531..23214593 FT /rpt_family="ALU" FT /note="88% identity: matches 1..63 of consensus" FT repeat_region complement(23213918..23213939) FT /rpt_type=INVERTED FT /note="IR10, 90% complementary to IR10' (129147..129168)" FT repeat_region complement(23213700..23213721) FT /rpt_type=INVERTED FT /note="IR10', 90% complementary to IR10 (128929..128950)" FT repeat_region complement(23213503..23213650) FT /rpt_family="L1" FT /note="83% identity: matches 47..190 of consensus" FT exon complement(23209965..23209980) FT /note="XPOUND prediction, score = 0.217" FT exon complement(23209935..23209944) FT /note="XPOUND prediction, score = 0.223" FT exon complement(23209758..23209763) FT /note="XPOUND prediction, score = 0.228" FT repeat_region complement(23209679..23209709) FT /rpt_type=INVERTED FT /note="IR11, 83% complementary to IR11' (133336..133366)" FT repeat_region complement(23209502..23209532) FT /rpt_type=INVERTED FT /note="IR11', 83% complementary to IR11 (133159..133189)" FT repeat_region complement(23209500..23209510) FT /note="TG repeat" FT repeat_region complement(23209384..23209413) FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 96.7%, counts = 15" FT repeat_region complement(23209384..23209411) FT /note="GT repeat" FT exon complement(23208999..23209011) FT /note="XPOUND prediction, score = 0.320" FT exon complement(23208980..23208996) FT /note="XPOUND prediction, score = 0.356" FT repeat_region complement(23208271..23208324) FT /rpt_type=INVERTED FT /note="IR12, 88% complementary to IR12' (134962..135015)" FT exon complement(23208202..23208211) FT /note="XPOUND prediction, score = 0.202" FT repeat_region complement(23207853..23207906) FT /rpt_type=INVERTED FT /note="IR12', 88% complementary to IR12 (134544..134597)" FT repeat_region complement(23207759..23207834) FT /rpt_family="THE" FT /note="94% identity: matches 9..84 of consensus" FT exon 23207481..23207737 FT /note="GENSCAN prediction, score = 1.86" FT repeat_region complement(23207470..23207659) FT /rpt_family="THE" FT /note="82% identity: matches 57..247 of consensus" FT repeat_region complement(23206146..23206251) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 67.9%, counts = 53" FT repeat_region complement(23206022..23206063) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 21" FT repeat_region complement(23206021..23206063) FT /note="TA repeat" FT exon complement(23205941..23205962) FT /note="XPOUND prediction, score = 0.514" FT repeat_region complement(23205736..23205771) FT /note="AC repeat" FT repeat_region complement(23205722..23205771) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 92.0%, counts = 25" FT repeat_region complement(23204949..23204963) FT /note="TTTA repeat" FT repeat_region 23204869..23204919 FT /rpt_family="ALU" FT /note="92% identity: matches 201..251 of consensus" FT repeat_region 23204745..23204853 FT /rpt_family="ALU" FT /note="85% identity: matches 35..146 of consensus" FT repeat_region complement(23204782..23204843) FT /rpt_family="L1" FT /note="87% identity: matches 464..525 of consensus" FT repeat_region 23204383..23204511 FT /rpt_family="L1" FT /note="84% identity: matches 158..286 of consensus" FT exon complement(23203573..23203690) FT /note="MZEF prediction, score = 0.886" FT repeat_region complement(23202848..23202897) FT /rpt_family="tttttatttg repeat" FT /rpt_type=TANDEM FT /note="homology = 80.0%, counts = 5" FT exon complement(23202315..23202361) FT /note="XPOUND prediction, score = 0.238" FT repeat_region complement(23201539..23201594) FT /rpt_family="THE" FT /note="96% identity: matches 116..171 of consensus" FT exon complement(23201454..23201512) FT /note="XPOUND prediction, score = 0.258" FT repeat_region complement(23201320..23201413) FT /rpt_family="THE" FT /note="90% identity: matches 132..224 of consensus" FT exon 23200186..23200353 FT /note="GENSCAN prediction, score = 7.00" FT exon complement(23200175..23200190) FT /note="XPOUND prediction, score = 0.262" FT exon 23199421..23199574 FT /note="MZEF prediction, score = 0.709" FT exon 23198008..23198151 FT /note="GENSCAN prediction, score = 2.83" FT exon complement(23197220..23197224) FT /note="XPOUND prediction, score = 0.276" FT repeat_region 23193799..23193892 FT /rpt_family="L1" FT /note="87% identity: matches 24..117 of consensus" FT repeat_region 23193640..23193758 FT /rpt_family="L1" FT /note="84% identity: matches 403..526 of consensus" FT repeat_region 23193438..23193545 FT /rpt_family="L1" FT /note="83% identity: matches 5259..5370 of consensus" FT repeat_region 23193365..23193402 FT /rpt_family="L1" FT /note="94% identity: matches 570..607 of consensus" FT repeat_region 23193290..23193341 FT /rpt_family="L1" FT /note="90% identity: matches 22..73 of consensus" FT repeat_region 23193265..23193306 FT /rpt_family="L1" FT /note="92% identity: matches 874..915 of consensus" FT repeat_region 23192777..23193101 FT /rpt_family="L1" FT /note="81% identity: matches 1653..1973 of consensus" FT repeat_region 23192670..23192877 FT /rpt_family="L1" FT /note="80% identity: matches 560..767 of consensus" FT repeat_region 23192583..23192626 FT /rpt_family="L1" FT /note="93% identity: matches 1471..1514 of consensus" FT repeat_region 23344284..23344331 FT /rpt_family="gaat repeat" FT /rpt_type=TANDEM FT /note="homology = 77.1%, counts = 12" FT repeat_region 23344602..23344806 FT /rpt_family="L1" FT /note="81% identity: matches 120..317 of consensus" FT repeat_region 23345079..23345217 FT /rpt_family="L1" FT /note="83% identity: matches 1009..1147 of consensus" FT repeat_region 23345341..23345677 FT /rpt_family="L1" FT /note="82% identity: matches 2211..2551 of consensus" FT repeat_region 23345744..23345882 FT /rpt_family="L1" FT /note="83% identity: matches 538..672 of consensus" FT repeat_region 23345935..23346195 FT /rpt_family="L1" FT /note="82% identity: matches 2..268 of consensus" FT exon complement(23346047..23346060) FT /note="XPOUND prediction, score = 0.242" FT repeat_region 23346295..23346574 FT /rpt_family="ALU" FT /note="92% identity: matches 1..280 of consensus" FT repeat_region complement(23346295..23346574) FT /rpt_family="L1" FT /note="87% identity: matches 246..526 of consensus" FT repeat_region 23346575..23346618 FT /rpt_family="aaaaaaaagaa repeat" FT /rpt_type=TANDEM FT /note="homology = 88.6%, counts = 4" FT repeat_region 23346590..23346603 FT /note="AAAAG repeat" FT repeat_region 23346816..23346915 FT /rpt_family="L1" FT /note="85% identity: matches 552..654 of consensus" FT repeat_region 23346968..23347034 FT /rpt_family="L1" FT /note="88% identity: matches 177..243 of consensus" FT exon complement(23346982..23347065) FT /note="MZEF prediction, score = 0.969" FT repeat_region 23347260..23347607 FT /rpt_family="L1" FT /note="82% identity: matches 156..504 of consensus" FT repeat_region 23347769..23347851 FT /rpt_family="L1" FT /note="86% identity: matches 284..366 of consensus" FT exon complement(23348641..23348654) FT /note="XPOUND prediction, score = 0.249" FT exon complement(23349472..23349508) FT /note="XPOUND prediction, score = 0.556" FT exon complement(23349695..23349797) FT /note="XPOUND prediction, score = 0.756" FT exon complement(23350913..23350920) FT /note="XPOUND prediction, score = 0.203" FT exon 23352123..23352332 FT /note="MZEF prediction, score = 0.600" FT exon complement(23352198..23352231) FT /note="XPOUND prediction, score = 0.316" FT exon 23352286..23352332 FT /note="XPOUND prediction, score = 0.388" FT repeat_region 23353031..23353043 FT /note="AAT repeat" FT repeat_region 23353592..23353618 FT /note="ATGA repeat" FT repeat_region 23353592..23353619 FT /rpt_family="atga repeat" FT /rpt_type=TANDEM FT /note="homology = 96.4%, counts = 7" FT repeat_region complement(23353983..23354542) FT /rpt_family="L1" FT /note="84% identity: matches 1831..2391 of consensus" FT repeat_region complement(23354524..23354838) FT /rpt_family="L1" FT /note="83% identity: matches 396..711 of consensus" FT repeat_region 23354913..23355024 FT /rpt_family="agttttgtttttgttt repeat" FT /rpt_type=TANDEM FT /note="homology = 67.0%, counts = 7" FT repeat_region complement(23354979..23355210) FT /rpt_family="L1" FT /note="84% identity: matches 2..233 of consensus" FT repeat_region complement(23355183..23355270) FT /rpt_family="L1" FT /note="93% identity: matches 679..766 of consensus" FT repeat_region complement(23355342..23355988) FT /rpt_family="L1" FT /note="86% identity: matches 442..1085 of consensus" FT exon 23355836..23355846 FT /note="XPOUND prediction, score = 0.488" FT repeat_region complement(23356044..23356340) FT /rpt_family="L1" FT /note="86% identity: matches 92..388 of consensus" FT repeat_region complement(23356218..23356638) FT /rpt_family="L1" FT /note="86% identity: matches 120..544 of consensus" FT repeat_region complement(23356636..23356733) FT /rpt_family="L1" FT /note="85% identity: matches 1..98 of consensus" FT repeat_region complement(23356717..23356754) FT /rpt_family="L1" FT /note="97% identity: matches 56..93 of consensus" FT repeat_region complement(23356885..23357054) FT /rpt_family="L1" FT /note="87% identity: matches 1..170 of consensus" FT exon 23357214..23357254 FT /note="XPOUND prediction, score = 0.249" FT exon 23357305..23357336 FT /note="XPOUND prediction, score = 0.315" FT repeat_region 23357465..23357628 FT /rpt_family="MER25" FT /note="83% identity: matches 48..208 of consensus" FT repeat_region 23357662..23357744 FT /rpt_family="MER25" FT /note="84% identity: matches 234..316 of consensus" FT exon 23357689..23357838 FT /note="GENSCAN prediction, score = 4.49" FT repeat_region 23357850..23357894 FT /rpt_family="MER25" FT /note="93% identity: matches 420..464 of consensus" FT exon complement(23357900..23358027) FT /note="XPOUND prediction, score = 0.353" FT repeat_region 23357949..23358095 FT /rpt_family="MER25" FT /note="87% identity: matches 891..1037 of consensus" FT repeat_region 23359163..23359288 FT /rpt_family="aaataa repeat" FT /rpt_type=TANDEM FT /note="homology = 61.1%, counts = 21" FT repeat_region complement(23359730..23359849) FT /rpt_family="THE" FT /note="88% identity: matches 253..373 of consensus" FT repeat_region complement(23359920..23360088) FT /rpt_family="THE" FT /note="85% identity: matches 1..169 of consensus" FT repeat_region complement(23360120..23360332) FT /rpt_family="THR" FT /note="86% identity: matches 1325..1537 of consensus" FT repeat_region complement(23360350..23360754) FT /rpt_family="THR" FT /note="83% identity: matches 918..1326 of consensus" FT exon complement(23360553..23360607) FT /note="XPOUND prediction, score = 0.428" FT repeat_region complement(23360810..23361071) FT /rpt_family="ALU" FT /note="85% identity: matches 545..801 of consensus" FT repeat_region 23360810..23361082 FT /rpt_family="L1" FT /note="82% identity: matches 161..424 of consensus" FT repeat_region complement(23361120..23361773) FT /rpt_family="THR" FT /note="84% identity: matches 177..828 of consensus" FT exon complement(23361419..23361488) FT /note="XPOUND prediction, score = 0.460" FT repeat_region complement(23361810..23361949) FT /rpt_family="THR" FT /note="91% identity: matches 26..165 of consensus" FT repeat_region complement(23361977..23362025) FT /rpt_family="THE" FT /note="91% identity: matches 297..345 of consensus" FT repeat_region complement(23362045..23362254) FT /rpt_family="THE" FT /note="81% identity: matches 84..293 of consensus" FT exon 23362181..23362310 FT /note="MZEF prediction, score = 0.926" FT repeat_region complement(23362255..23362305) FT /rpt_family="THE" FT /note="92% identity: matches 1..51 of consensus" FT exon complement(23363121..23363131) FT /note="XPOUND prediction, score = 0.331" FT repeat_region 23363572..23363852 FT /rpt_family="ALU" FT /note="98% identity: matches 1..281 of consensus" FT repeat_region complement(23363572..23363852) FT /rpt_family="L1" FT /note="91% identity: matches 245..526 of consensus" FT misc_feature 23363575..23363722 FT /note="CpG_island (%GC=58.8, o/e=1.27, #CpGs=14)" FT repeat_region 23365869..23365882 FT /note="TG repeat" FT repeat_region complement(23366449..23366563) FT /rpt_family="L1" FT /note="89% identity: matches 406..520 of consensus" FT repeat_region complement(23366629..23366821) FT /rpt_family="L1" FT /note="83% identity: matches 2101..2293 of consensus" FT repeat_region 23366889..23367152 FT /rpt_type=INVERTED FT /note="IR6, 80% complementary to IR6' (81376..81637)" FT repeat_region complement(23366889..23367153) FT /rpt_family="ALU" FT /note="85% identity: matches 10..271 of consensus" FT repeat_region 23367037..23367152 FT /rpt_family="L1" FT /note="88% identity: matches 470..585 of consensus" FT repeat_region complement(23367571..23367695) FT /rpt_family="L1" FT /note="86% identity: matches 1663..1788 of consensus" FT exon complement(23367964..23367970) FT /note="XPOUND prediction, score = 0.211" FT repeat_region 23368268..23368363 FT /rpt_family="aattttaataaa repeat" FT /rpt_type=TANDEM FT /note="homology = 67.7%, counts = 8" FT repeat_region 23368598..23368859 FT /rpt_type=INVERTED FT /note="IR6', 80% complementary to IR6 (79667..79930)" FT repeat_region 23368598..23368866 FT /rpt_family="ALU" FT /note="86% identity: matches 11..278 of consensus" FT repeat_region complement(23368601..23368866) FT /rpt_family="L1" FT /note="85% identity: matches 161..424 of consensus" FT repeat_region 23368881..23368912 FT /rpt_family="aagc repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 8" FT repeat_region 23368881..23368913 FT /note="AAGC repeat" FT exon 23368947..23369028 FT /note="MZEF prediction, score = 0.546" FT repeat_region 23369056..23369099 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 97.7%, counts = 22" FT repeat_region 23369059..23369099 FT /note="AC repeat" FT repeat_region 23369237..23369256 FT /note="AAC repeat" FT exon complement(23369351..23369375) FT /note="XPOUND prediction, score = 0.553" FT exon 23370032..23370137 FT /note="MZEF prediction, score = 0.544" FT repeat_region 23370079..23370093 FT /note="AAAC repeat" FT repeat_region 23370868..23370905 FT /rpt_family="L1" FT /note="94% identity: matches 59..96 of consensus" FT exon 23371400..23371492 FT /note="MZEF prediction, score = 0.550" FT repeat_region 23371417..23371461 FT /rpt_family="aac repeat" FT /rpt_type=TANDEM FT /note="homology = 75.6%, counts = 15" FT repeat_region 23371447..23371462 FT /note="AAC repeat" FT repeat_region 23374865..23374965 FT /rpt_family="ALU" FT /note="86% identity: matches 1..101 of consensus" FT repeat_region 23375009..23375050 FT /rpt_family="ALU" FT /note="97% identity: matches 772..813 of consensus" FT exon complement(23375653..23375681) FT /note="XPOUND prediction, score = 0.253" FT repeat_region 23377507..23377522 FT /note="TTCA repeat" FT exon complement(23378198..23378229) FT /note="XPOUND prediction, score = 0.393" FT exon complement(23378507..23378598) FT /note="MZEF prediction, score = 0.626" FT repeat_region 23379657..23379704 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 95.8%, counts = 24" FT repeat_region 23379657..23379705 FT /note="AC repeat" FT exon complement(23379822..23379852) FT /note="XPOUND prediction, score = 0.843" FT repeat_region 23379831..23380031 FT /rpt_family="ALU" FT /note="79% identity: matches 1..201 of consensus" FT repeat_region 23380149..23380192 FT /rpt_family="aaaaaaaaaac repeat" FT /rpt_type=TANDEM FT /note="homology = 86.4%, counts = 4" FT repeat_region 23380155..23380178 FT /note="AAAAG repeat" FT exon complement(23380959..23381020) FT /note="XPOUND prediction, score = 0.311" FT repeat_region 23381085..23381098 FT /note="CA repeat" FT repeat_region 23381465..23381520 FT /rpt_family="THE" FT /note="91% identity: matches 87..142 of consensus" FT repeat_region 23381571..23381724 FT /rpt_family="L1" FT /note="85% identity: matches 245..398 of consensus" FT repeat_region complement(23381571..23381729) FT /rpt_family="ALU" FT /note="89% identity: matches 425..583 of consensus" FT repeat_region 23381793..23381836 FT /rpt_family="THE" FT /note="93% identity: matches 252..295 of consensus" FT repeat_region 23381816..23381921 FT /rpt_family="THE" FT /note="90% identity: matches 93..198 of consensus" FT repeat_region 23381973..23382100 FT /rpt_family="THR" FT /note="85% identity: matches 36..162 of consensus" FT exon 23382011..23382191 FT /note="MZEF prediction, score = 0.503" FT repeat_region 23382042..23382588 FT /rpt_family="THR" FT /note="83% identity: matches 166..713 of consensus" FT exon 23382409..23382508 FT /note="MZEF prediction, score = 0.756" FT exon 23382675..23383310 FT /note="GENSCAN prediction, score = 21.76" FT repeat_region 23382695..23383052 FT /rpt_family="THR" FT /note="82% identity: matches 320..677 of consensus" FT repeat_region 23382971..23383493 FT /rpt_family="THR" FT /note="82% identity: matches 1010..1529 of consensus" FT exon complement(23383021..23383059) FT /note="XPOUND prediction, score = 0.280" FT exon 23383384..23383459 FT /note="MZEF prediction, score = 0.918" FT repeat_region 23383467..23383538 FT /rpt_family="THR" FT /note="87% identity: matches 80..148 of consensus" FT repeat_region 23383572..23383728 FT /rpt_family="THE" FT /note="82% identity: matches 24..184 of consensus" FT exon complement(23383665..23383757) FT /note="XPOUND prediction, score = 0.545" FT repeat_region 23383795..23383916 FT /rpt_family="THE" FT /note="89% identity: matches 85..206 of consensus" FT repeat_region 23384072..23384084 FT /note="AT repeat" FT repeat_region 23384476..23384620 FT /rpt_family="L1" FT /note="82% identity: matches 261..405 of consensus" FT exon complement(23384481..23384490) FT /note="XPOUND prediction, score = 0.281" FT repeat_region 23384659..23384700 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 95.2%, counts = 21" FT repeat_region 23384663..23384700 FT /note="AC repeat" FT exon complement(23384738..23384764) FT /note="XPOUND prediction, score = 0.684" FT repeat_region 23384801..23384838 FT /rpt_family="L1" FT /note="94% identity: matches 301..338 of consensus" FT repeat_region 23385172..23385225 FT /rpt_family="L1" FT /note="88% identity: matches 2460..2513 of consensus" FT repeat_region 23385268..23385393 FT /rpt_family="L1" FT /note="89% identity: matches 1783..1908 of consensus" FT repeat_region 23385401..23385676 FT /rpt_family="ALU" FT /note="85% identity: matches 1..273 of consensus" FT repeat_region complement(23385416..23385667) FT /rpt_family="L1" FT /note="82% identity: matches 176..423 of consensus" FT repeat_region 23385710..23385944 FT /rpt_family="L1" FT /note="84% identity: matches 2689..2922 of consensus" FT repeat_region 23386050..23386200 FT /rpt_family="L1" FT /note="85% identity: matches 3011..3161 of consensus" FT repeat_region complement(23386307..23386367) FT /rpt_family="ALU" FT /note="90% identity: matches 217..277 of consensus" FT exon complement(23386948..23386963) FT /note="XPOUND prediction, score = 0.217" FT repeat_region complement(23388713..23388992) FT /rpt_family="MER11" FT /note="88% identity: matches 46..324 of consensus" FT exon complement(23388834..23388865) FT /note="XPOUND prediction, score = 0.585" FT repeat_region complement(23389021..23389193) FT /rpt_family="MER11" FT /note="85% identity: matches 92..268 of consensus" FT repeat_region complement(23389412..23389526) FT /rpt_family="MER11" FT /note="85% identity: matches 74..189 of consensus" FT repeat_region complement(23389538..23389635) FT /rpt_family="MER11" FT /note="88% identity: matches 57..153 of consensus" FT repeat_region complement(23389634..23389731) FT /rpt_family="MER11" FT /note="92% identity: matches 55..153 of consensus" FT repeat_region 23389950..23390222 FT /rpt_family="ALU" FT /note="83% identity: matches 401..672 of consensus" FT repeat_region complement(23389998..23390049) FT /rpt_family="L1" FT /note="90% identity: matches 487..538 of consensus" FT repeat_region complement(23390130..23390200) FT /rpt_family="L1" FT /note="88% identity: matches 182..252 of consensus" FT repeat_region 23391260..23391336 FT /rpt_family="ataaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 67.5%, counts = 11" FT repeat_region 23392504..23392514 FT /note="AC repeat" FT repeat_region complement(23393352..23393616) FT /rpt_family="L1" FT /note="87% identity: matches 250..515 of consensus" FT repeat_region 23393352..23393621 FT /rpt_family="ALU" FT /note="90% identity: matches 12..281 of consensus" FT repeat_region 23393622..23393906 FT /rpt_family="ataaaaaaaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 58.2%, counts = 19" FT repeat_region 23394424..23394536 FT /rpt_family="L1" FT /note="84% identity: matches 2063..2175 of consensus" FT repeat_region 23394830..23394841 FT /note="AT repeat" FT repeat_region 23395088..23395173 FT /rpt_family="L1" FT /note="87% identity: matches 1459..1544 of consensus" FT repeat_region 23395206..23395229 FT /rpt_type=INVERTED FT /note="IR7, 95% complementary to IR7' (108561..108584)" FT repeat_region complement(23395206..23395783) FT /rpt_family="L1" FT /note="91% identity: matches 905..1482 of consensus" FT exon complement(23395207..23395275) FT /note="MZEF prediction, score = 0.727" FT exon complement(23395207..23395344) FT /note="XPOUND prediction, score = 0.552" FT exon complement(23395428..23395693) FT /note="XPOUND prediction, score = 0.596" FT repeat_region 23395783..23395806 FT /rpt_type=INVERTED FT /note="IR7', 95% complementary to IR7 (107984..108007)" FT repeat_region 23395783..23400182 FT /rpt_family="L1" FT /note="94% identity: matches 1458..5868 of consensus" FT exon 23396609..23397445 FT /note="GENSCAN prediction, score = 15.08" FT repeat_region 23396901..23396914 FT /note="CACCA repeat" FT exon 23398612..23398763 FT /note="MZEF prediction, score = 0.658" FT exon 23399270..23399688 FT /note="GENSCAN prediction, score = 6.45" FT repeat_region 23400204..23400317 FT /rpt_family="L1" FT /note="97% identity: matches 208..321 of consensus" FT repeat_region 23400339..23400354 FT /note="AATAA repeat" FT repeat_region 23401229..23401274 FT /rpt_family="L1" FT /note="91% identity: matches 556..601 of consensus" FT repeat_region 23401437..23401496 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 78.3%, counts = 30" FT repeat_region 23401454..23401466 FT /note="ATAC repeat" FT repeat_region 23401467..23401491 FT /note="CA repeat" FT repeat_region 23402200..23402210 FT /note="AT repeat" FT repeat_region 23402223..23402326 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 68.3%, counts = 52" FT repeat_region 23402262..23402272 FT /note="TA repeat" FT repeat_region 23402297..23402309 FT /note="AT repeat" FT repeat_region complement(23406840..23407119) FT /rpt_family="L1" FT /note="91% identity: matches 245..527 of consensus" FT repeat_region 23406848..23407119 FT /rpt_family="ALU" FT /note="94% identity: matches 1..274 of consensus" FT misc_feature 23406979..23407115 FT /note="CpG_island (%GC=67.2, o/e=0.72, #CpGs=13)" FT repeat_region 23408014..23408127 FT /rpt_family="gaaatttaaaaaaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 69.3%, counts = 6" FT repeat_region 23409000..23409012 FT /note="TC repeat" FT repeat_region 23409293..23409318 FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 13" FT repeat_region 23409293..23409318 FT /note="GT repeat" FT exon complement(23409469..23409548) FT /note="MZEF prediction, score = 0.584" FT exon complement(23411358..23411374) FT /note="XPOUND prediction, score = 0.204" FT exon complement(23411698..23411711) FT /note="XPOUND prediction, score = 0.500" FT repeat_region 23411831..23411862 FT /rpt_type=INVERTED FT /note="IR8, 81% complementary to IR8' (124647..124678)" FT repeat_region 23411832..23411939 FT /rpt_family="acatatatacac repeat" FT /rpt_type=TANDEM FT /note="homology = 77.8%, counts = 9" FT repeat_region 23411869..23411900 FT /rpt_type=INVERTED FT /note="IR8', 81% complementary to IR8 (124609..124640)" FT repeat_region 23411916..23411932 FT /note="AC repeat" FT exon complement(23412065..23412109) FT /note="XPOUND prediction, score = 0.501" FT exon 23412894..23413063 FT /note="GENSCAN prediction, score = 3.37" FT /note="MZEF prediction, score = 0.600" FT exon 23413031..23413063 FT /note="XPOUND prediction, score = 0.338" FT repeat_region 23414154..23414189 FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 97.2%, counts = 18" FT repeat_region 23414159..23414189 FT /note="TG repeat" FT repeat_region 23414189..23414215 FT /rpt_type=INVERTED FT /note="IR9, 85% complementary to IR9' (126997..127023)" FT repeat_region 23414218..23414246 FT /note="TA repeat" FT repeat_region 23414218..23414249 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 93.8%, counts = 16" FT repeat_region 23414219..23414245 FT /rpt_type=INVERTED FT /note="IR9', 85% complementary to IR9 (126967..126993)" FT exon 23414251..23414373 FT /note="MZEF prediction, score = 0.953" FT repeat_region 23414276..23414406 FT /rpt_family="MER29" FT /note="80% identity: matches 240..374 of consensus" FT exon 23414310..23414398 FT /note="XPOUND prediction, score = 0.311" FT repeat_region 23414393..23414456 FT /rpt_family="MER29" FT /note="89% identity: matches 211..274 of consensus" FT repeat_region 23414457..23414558 FT /rpt_family="aagaaaaaatttttaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 69.6%, counts = 6" FT repeat_region 23414496..23414548 FT /rpt_type=INVERTED FT /note="IR10, 78% complementary to IR10' (127637..127689)" FT repeat_region complement(23414721..23414823) FT /rpt_family="MER17" FT /note="92% identity: matches 51..156 of consensus" FT repeat_region 23414859..23414911 FT /rpt_type=INVERTED FT /note="IR10', 78% complementary to IR10 (127274..127326)" FT repeat_region complement(23414891..23414955) FT /rpt_family="MER17" FT /note="87% identity: matches 21..85 of consensus" FT repeat_region 23414952..23415192 FT /rpt_type=INVERTED FT /note="IR11, 86% complementary to IR11' (128552..128780)" FT repeat_region complement(23415223..23415312) FT /rpt_family="MER17" FT /note="88% identity: matches 60..149 of consensus" FT repeat_region 23415774..23416002 FT /rpt_type=INVERTED FT /note="IR11', 86% complementary to IR11 (127730..127970)" FT exon 23416290..23416303 FT /note="XPOUND prediction, score = 0.575" FT exon 23416677..23416762 FT /note="MZEF prediction, score = 0.944" FT repeat_region 23418463..23418487 FT /rpt_type=INVERTED FT /note="IR12, 96% complementary to IR12' (133104..133128)" FT exon complement(23419835..23419868) FT /note="MZEF prediction, score = 0.565" FT repeat_region 23420326..23420350 FT /rpt_type=INVERTED FT /note="IR12', 96% complementary to IR12 (131241..131265)" FT repeat_region 23420351..23420616 FT /rpt_family="L1" FT /note="87% identity: matches 161..424 of consensus" FT repeat_region complement(23420351..23420627) FT /rpt_family="ALU" FT /note="89% identity: matches 130..406 of consensus" FT exon complement(23420367..23420407) FT /note="XPOUND prediction, score = 0.243" FT repeat_region 23420510..23420629 FT /rpt_type=INVERTED FT /note="IR13, 85% complementary to IR13' (135166..135285)" FT repeat_region 23420660..23420750 FT /rpt_family="L1" FT /note="89% identity: matches 161..253 of consensus" FT repeat_region complement(23420660..23420930) FT /rpt_family="ALU" FT /note="86% identity: matches 152..426 of consensus" FT exon complement(23420668..23420714) FT /note="XPOUND prediction, score = 0.288" FT repeat_region 23420734..23420775 FT /rpt_family="L1" FT /note="92% identity: matches 388..429 of consensus" FT exon complement(23420868..23420900) FT /note="XPOUND prediction, score = 0.649" FT repeat_region 23422084..23422179 FT /rpt_family="THE" FT /note="86% identity: matches 1..97 of consensus" FT repeat_region 23422173..23422207 FT /rpt_family="THE" FT /note="97% identity: matches 99..133 of consensus" FT repeat_region 23422320..23422376 FT /rpt_family="THE" FT /note="94% identity: matches 251..307 of consensus" FT repeat_region 23422388..23422507 FT /rpt_type=INVERTED FT /note="IR13', 85% complementary to IR13 (133288..133407)" FT repeat_region 23422398..23422661 FT /rpt_family="ALU" FT /note="91% identity: matches 314..577 of consensus" FT repeat_region complement(23422398..23422661) FT /rpt_family="L1" FT /note="87% identity: matches 251..515 of consensus" FT repeat_region 23423220..23423341 FT /rpt_family="L1" FT /note="85% identity: matches 779..900 of consensus" FT repeat_region 23423553..23423565 FT /note="ATC repeat" FT exon 23424357..23424495 FT /note="GENSCAN prediction, score = 7.55" FT repeat_region complement(23425438..23425559) FT /rpt_family="MER2" FT /note="88% identity: matches 15..136 of consensus" FT repeat_region complement(23425511..23425620) FT /rpt_family="MER2" FT /note="84% identity: matches 90..199 of consensus" FT exon complement(23427698..23427750) FT /note="MZEF prediction, score = 0.585" FT exon complement(23428595..23428728) FT /note="MZEF prediction, score = 0.618" FT repeat_region 23428675..23428791 FT /rpt_family="L1" FT /note="83% identity: matches 472..588 of consensus" FT repeat_region 23428846..23428920 FT /rpt_family="L1" FT /note="88% identity: matches 158..231 of consensus" FT repeat_region 23431159..23431170 FT /note="GCA repeat" FT exon complement(23431758..23431782) FT /note="XPOUND prediction, score = 0.278" FT repeat_region 23434114..23434425 FT /rpt_type=INVERTED FT /note="IR14, 84% complementary to IR14' (148294..148606)" FT repeat_region 23434126..23434241 FT /rpt_family="ALU" FT /note="94% identity: matches 329..444 of consensus" FT repeat_region complement(23434135..23434241) FT /rpt_family="L1" FT /note="92% identity: matches 409..515 of consensus" FT repeat_region 23434259..23434406 FT /rpt_family="ALU" FT /note="95% identity: matches 134..281 of consensus" FT repeat_region complement(23434259..23434406) FT /rpt_family="L1" FT /note="91% identity: matches 245..392 of consensus" FT repeat_region 23434526..23434581 FT /rpt_family="aatcatt repeat" FT /rpt_type=TANDEM FT /note="homology = 83.9%, counts = 8" FT repeat_region 23435516..23435828 FT /rpt_type=INVERTED FT /note="IR14', 84% complementary to IR14 (146892..147203)" FT repeat_region 23435557..23435661 FT /rpt_family="L1" FT /note="87% identity: matches 183..287 of consensus" FT repeat_region complement(23435558..23435678) FT /rpt_family="ALU" FT /note="90% identity: matches 1026..1146 of consensus" FT repeat_region complement(23435709..23435807) FT /rpt_family="ALU" FT /note="94% identity: matches 468..566 of consensus" FT repeat_region 23435709..23435807 FT /rpt_family="L1" FT /note="89% identity: matches 487..585 of consensus" FT exon complement(23437295..23437328) FT /note="XPOUND prediction, score = 0.442" FT repeat_region 23437474..23437732 FT /rpt_family="ALU" FT /note="83% identity: matches 2..260 of consensus" FT repeat_region complement(23437531..23437732) FT /rpt_family="L1" FT /note="79% identity: matches 259..462 of consensus" FT repeat_region 23437706..23437771 FT /rpt_type=INVERTED FT /note="IR15, 77% complementary to IR15' (152416..152481)" FT repeat_region 23437749..23437765 FT /note="AAC repeat" FT exon complement(23438560..23438724) FT /note="MZEF prediction, score = 0.527" FT exon complement(23438725..23438804) FT /note="MZEF prediction, score = 0.604" FT /note="XPOUND prediction, score = 0.390" FT exon complement(23438955..23438980) FT /note="XPOUND prediction, score = 0.239" FT repeat_region 23439638..23439703 FT /rpt_type=INVERTED FT /note="IR15', 77% complementary to IR15 (150484..150549)" FT repeat_region complement(23439670..23439815) FT /rpt_family="ALU" FT /note="91% identity: matches 124..265 of consensus" FT repeat_region 23439670..23439815 FT /rpt_family="L1" FT /note="83% identity: matches 252..393 of consensus" FT repeat_region 23439704..23439755 FT /rpt_type=INVERTED FT /note="IR16, 84% complementary to IR16' (154324..154375)" FT repeat_region 23439830..23439942 FT /rpt_family="L1" FT /note="90% identity: matches 409..521 of consensus" FT repeat_region complement(23439830..23439943) FT /rpt_family="ALU" FT /note="93% identity: matches 380..493 of consensus" FT exon complement(23439840..23439907) FT /note="XPOUND prediction, score = 0.526" FT repeat_region 23440603..23440658 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 71.4%, counts = 28" FT repeat_region 23440619..23440629 FT /note="TA repeat" FT repeat_region complement(23441544..23441616) FT /rpt_family="L1" FT /note="86% identity: matches 183..255 of consensus" FT repeat_region 23441544..23441620 FT /rpt_family="ALU" FT /note="90% identity: matches 643..719 of consensus" FT repeat_region 23441546..23441597 FT /rpt_type=INVERTED FT /note="IR16', 84% complementary to IR16 (152482..152533)" FT exon complement(23441562..23441616) FT /note="XPOUND prediction, score = 0.669" FT repeat_region 23441640..23441657 FT /note="AAACA repeat" FT repeat_region 23442655..23442750 FT /rpt_family="ggaa repeat" FT /rpt_type=TANDEM FT /note="homology = 81.2%, counts = 24" FT repeat_region 23442690..23442703 FT /note="AGGG repeat" FT repeat_region 23442711..23442750 FT /note="GGAA repeat" FT repeat_region 23443292..23443569 FT /rpt_family="ALU" FT /note="88% identity: matches 5..284 of consensus" FT repeat_region complement(23443302..23443534) FT /rpt_family="L1" FT /note="84% identity: matches 194..424 of consensus" FT repeat_region 23443568..23443584 FT /note="AATC repeat" FT exon complement(23444235..23444399) FT /note="MZEF prediction, score = 0.735" FT exon complement(23444864..23444891) FT /note="XPOUND prediction, score = 0.288" FT exon complement(23445703..23445734) FT /note="XPOUND prediction, score = 0.306" FT exon complement(23445820..23445829) FT /note="XPOUND prediction, score = 0.202" FT exon complement(23448126..23448162) FT /note="XPOUND prediction, score = 0.697" FT exon 23448216..23448306 FT /note="GENSCAN prediction, score = 0.83" FT repeat_region 23448516..23448552 FT /rpt_family="L1" FT /note="97% identity: matches 1286..1322 of consensus" FT repeat_region 23448623..23448677 FT /rpt_family="L1" FT /note="89% identity: matches 53..107 of consensus" FT exon 23448628..23448708 FT /note="MZEF prediction, score = 0.956" FT exon complement(23449908..23449921) FT /note="XPOUND prediction, score = 0.217" FT exon complement(23449928..23449944) FT /note="XPOUND prediction, score = 0.273" FT repeat_region 23451081..23451123 FT /rpt_family="ALU" FT /note="93% identity: matches 105..147 of consensus" FT repeat_region complement(23451156..23451254) FT /rpt_family="L1" FT /note="83% identity: matches 161..259 of consensus" FT repeat_region 23451181..23451254 FT /rpt_family="ALU" FT /note="87% identity: matches 517..590 of consensus" FT repeat_region 23451280..23451529 FT /rpt_family="ALU" FT /note="81% identity: matches 10..259 of consensus" FT repeat_region complement(23451293..23451449) FT /rpt_family="L1" FT /note="82% identity: matches 264..416 of consensus" FT exon complement(23451854..23451964) FT /note="XPOUND prediction, score = 0.780" FT exon 23451902..23452526 FT /note="GENSCAN prediction, score = 5.37" FT exon complement(23452047..23452422) FT /note="XPOUND prediction, score = 0.797" FT repeat_region 23453368..23453470 FT /rpt_family="L1" FT /note="84% identity: matches 83..186 of consensus" FT repeat_region 23453427..23453636 FT /rpt_family="ALU" FT /note="84% identity: matches 69..281 of consensus" FT exon complement(23453489..23453510) FT /note="XPOUND prediction, score = 0.461" FT repeat_region complement(23453537..23453588) FT /rpt_family="L1" FT /note="90% identity: matches 208..259 of consensus" FT repeat_region 23453609..23453647 FT /rpt_type=INVERTED FT /note="IR17, 76% complementary to IR17' (168345..168383)" FT exon 23453714..23453796 FT /note="MZEF prediction, score = 0.681" FT repeat_region 23454757..23454770 FT /note="TTTTG repeat" FT repeat_region 23455567..23455605 FT /rpt_type=INVERTED FT /note="IR17', 76% complementary to IR17 (166387..166425)" FT repeat_region 23455579..23455836 FT /rpt_family="L1" FT /note="81% identity: matches 161..424 of consensus" FT repeat_region complement(23455592..23455790) FT /rpt_family="ALU" FT /note="88% identity: matches 71..270 of consensus" FT exon complement(23455760..23455772) FT /note="XPOUND prediction, score = 0.208" FT repeat_region complement(23455784..23455846) FT /rpt_family="ALU" FT /note="92% identity: matches 5..67 of consensus" FT exon complement(23456072..23456086) FT /note="XPOUND prediction, score = 0.253" FT exon complement(23456094..23456121) FT /note="XPOUND prediction, score = 0.253" FT repeat_region 23456386..23456398 FT /note="AT repeat" FT repeat_region 23456731..23456951 FT /rpt_family="aaaaaaaataaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 59.3%, counts = 17" FT repeat_region complement(23456990..23457103) FT /rpt_family="THE" FT /note="87% identity: matches 260..372 of consensus" FT repeat_region complement(23457183..23457232) FT /rpt_family="THE" FT /note="90% identity: matches 21..70 of consensus" FT repeat_region 23458174..23458199 FT /rpt_type=INVERTED FT /note="IR18, 84% complementary to IR18' (170987..171012)" FT repeat_region 23458209..23458234 FT /rpt_type=INVERTED FT /note="IR18', 84% complementary to IR18 (170952..170977)" FT repeat_region 23459020..23459249 FT /rpt_family="ALU" FT /note="88% identity: matches 457..685 of consensus" FT repeat_region complement(23459024..23459224) FT /rpt_family="L1" FT /note="87% identity: matches 389..592 of consensus" FT repeat_region 23459305..23459525 FT /rpt_family="aaaaaaatataaa repeat" FT /rpt_type=TANDEM FT /note="homology = 61.1%, counts = 17" FT exon complement(23460043..23460073) FT /note="XPOUND prediction, score = 0.276" FT repeat_region 23460448..23460539 FT /rpt_family="aaga repeat" FT /rpt_type=TANDEM FT /note="homology = 67.4%, counts = 23" FT repeat_region 23460456..23460475 FT /note="AAAAT repeat" FT exon 23460487..23460576 FT /note="MZEF prediction, score = 0.940" FT repeat_region 23460821..23460870 FT /rpt_family="L1" FT /note="90% identity: matches 132..181 of consensus" FT repeat_region 23461470..23461667 FT /rpt_family="acaaaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 60.1%, counts = 18" FT repeat_region 23461714..23461751 FT /rpt_family="L1" FT /note="94% identity: matches 563..600 of consensus" FT repeat_region 23461932..23462006 FT /rpt_family="L1" FT /note="86% identity: matches 45..119 of consensus" FT repeat_region 23462664..23462764 FT /rpt_family="MER17" FT /note="84% identity: matches 33..133 of consensus" FT exon 23463910..23463978 FT /note="MZEF prediction, score = 0.774" FT repeat_region 23465744..23465769 FT /note="AC repeat" FT repeat_region 23465744..23465785 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 88.1%, counts = 21" FT exon complement(23465946..23465977) FT /note="XPOUND prediction, score = 0.393" FT repeat_region 23466432..23466491 FT /rpt_type=INVERTED FT /note="IR19, 80% complementary to IR19' (180286..180347)" FT repeat_region 23466506..23466585 FT /rpt_family="aaatctaaattttaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 73.8%, counts = 5" FT exon complement(23467499..23467583) FT /note="MZEF prediction, score = 0.553" FT repeat_region 23467508..23467569 FT /rpt_type=INVERTED FT /note="IR19', 80% complementary to IR19 (179210..179269)" FT repeat_region 23468367..23468399 FT /rpt_family="L1" FT /note="100% identity: matches 40..72 of consensus" FT repeat_region 23469039..23469110 FT /rpt_family="L1" FT /note="87% identity: matches 809..880 of consensus" FT misc_feature 23469513..23469630 FT /note="CpG_island (%GC=64.4, o/e=1.20, #CpGs=12)" FT repeat_region 23469521..23469638 FT /rpt_family="ALU" FT /note="92% identity: matches 1..118 of consensus" FT repeat_region complement(23469521..23469638) FT /rpt_family="L1" FT /note="89% identity: matches 409..526 of consensus" FT repeat_region 23469658..23469807 FT /rpt_family="ALU" FT /note="91% identity: matches 341..491 of consensus" FT repeat_region complement(23469658..23469807) FT /rpt_family="L1" FT /note="88% identity: matches 159..309 of consensus" FT repeat_region 23470251..23470301 FT /rpt_family="L1" FT /note="92% identity: matches 27..77 of consensus" FT repeat_region 23470572..23470628 FT /rpt_family="L1" FT /note="89% identity: matches 539..595 of consensus" FT repeat_region 23470648..23470705 FT /rpt_family="L1" FT /note="87% identity: matches 511..568 of consensus" FT repeat_region 23470691..23470754 FT /rpt_family="L1" FT /note="89% identity: matches 90..153 of consensus" FT misc_feature complement(23386557..23567471) FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon 23567061..23567240 FT /note="MZEF prediction, score = 0.576" FT exon complement(23566070..23566215) FT /note="GENSCAN prediction, score = 9.24" FT exon complement(23566070..23566150) FT /note="XPOUND prediction, score = 0.727" FT exon complement(23564820..23564851) FT /note="XPOUND prediction, score = 0.357" FT repeat_region complement(23564320..23564589) FT /rpt_family="ALU" FT /note="89% identity: matches 11..279 of consensus" FT repeat_region 23564320..23564589 FT /rpt_family="L1" FT /note="84% identity: matches 245..516 of consensus" FT repeat_region complement(23563867..23563885) FT /note="GACT repeat" FT repeat_region 23563255..23563509 FT /rpt_family="L1" FT /note="83% identity: matches 667..926 of consensus" FT repeat_region complement(23563243..23563509) FT /rpt_family="ALU" FT /note="88% identity: matches 10..276 of consensus" FT exon complement(23562438..23562496) FT /note="XPOUND prediction, score = 0.567" FT exon 23561470..23561574 FT /note="MZEF prediction, score = 0.981" FT exon complement(23561388..23561476) FT /note="MZEF prediction, score = 0.718" FT exon complement(23561388..23561403) FT /note="XPOUND prediction, score = 0.263" FT exon complement(23559552..23559650) FT /note="MZEF prediction, score = 0.881" FT repeat_region complement(23559062..23559111) FT /rpt_family="MER5" FT /note="90% identity: matches 1..50 of consensus" FT repeat_region 23558955..23559056 FT /rpt_family="THE" FT /note="83% identity: matches 83..184 of consensus" FT repeat_region complement(23558664..23558738) FT /rpt_family="THE" FT /note="92% identity: matches 1..76 of consensus" FT repeat_region complement(23558382..23558685) FT /rpt_family="THE" FT /note="83% identity: matches 41..342 of consensus" FT repeat_region 23557694..23557765 FT /rpt_family="L1" FT /note="88% identity: matches 21..92 of consensus" FT repeat_region 23557620..23557716 FT /rpt_family="L1" FT /note="85% identity: matches 227..324 of consensus" FT exon complement(23557293..23557302) FT /note="XPOUND prediction, score = 0.222" FT repeat_region complement(23557258..23557268) FT /note="GT repeat" FT exon complement(23557097..23557124) FT /note="XPOUND prediction, score = 0.289" FT exon complement(23555318..23555421) FT /note="XPOUND prediction, score = 0.424" FT repeat_region complement(23555237..23555276) FT /rpt_type=INVERTED FT /note="IR1, 89% complementary to IR1' (12249..12286)" FT repeat_region complement(23555186..23555223) FT /rpt_type=INVERTED FT /note="IR1', 89% complementary to IR1 (12196..12235)" FT repeat_region complement(23554852..23554864) FT /note="CATG repeat" FT exon complement(23554785..23554805) FT /note="XPOUND prediction, score = 0.342" FT exon complement(23553048..23553122) FT /note="XPOUND prediction, score = 0.548" FT exon complement(23552538..23552639) FT /note="GENSCAN prediction, score = 2.27" FT exon complement(23552538..23552601) FT /note="XPOUND prediction, score = 0.458" FT repeat_region complement(23552316..23552327) FT /note="CAT repeat" FT exon complement(23551553..23551730) FT /note="XPOUND prediction, score = 0.582" FT exon complement(23551203..23551282) FT /note="XPOUND prediction, score = 0.729" FT exon complement(23549840..23549864) FT /note="XPOUND prediction, score = 0.224" FT exon complement(23549502..23549653) FT /note="GENSCAN prediction, score = 3.29" FT exon complement(23549110..23549130) FT /note="XPOUND prediction, score = 0.207" FT repeat_region 23548028..23548817 FT /rpt_family="L1" FT /note="94% identity: matches 1645..2432 of consensus" FT repeat_region complement(23547458..23548028) FT /rpt_family="L1" FT /note="93% identity: matches 262..827 of consensus" FT exon complement(23547608..23547748) FT /note="XPOUND prediction, score = 0.533" FT exon complement(23547481..23547725) FT /note="GENSCAN prediction, score = 6.45" FT repeat_region complement(23547213..23547452) FT /rpt_family="tctttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 66.2%, counts = 30" FT repeat_region complement(23547394..23547422) FT /note="TTCC repeat" FT repeat_region complement(23547378..23547392) FT /note="CCTTT repeat" FT repeat_region complement(23547244..23547340) FT /note="CTTT repeat" FT exon complement(23546804..23547049) FT /note="MZEF prediction, score = 0.732" FT repeat_region 23546950..23546996 FT /rpt_family="ALU" FT /note="91% identity: matches 16..62 of consensus" FT repeat_region complement(23546812..23546845) FT /rpt_type=INVERTED FT /note="IR2, 85% complementary to IR2' (21305..21338)" FT repeat_region complement(23546134..23546167) FT /rpt_type=INVERTED FT /note="IR2', 85% complementary to IR2 (20627..20660)" FT exon complement(23545638..23545669) FT /note="XPOUND prediction, score = 0.322" FT repeat_region complement(23545519..23545554) FT /rpt_family="tttttttttgtt repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 3" FT repeat_region 23545351..23545511 FT /rpt_family="ALU" FT /note="88% identity: matches 913..1073 of consensus" FT repeat_region complement(23545384..23545489) FT /rpt_family="L1" FT /note="88% identity: matches 184..289 of consensus" FT repeat_region 23545261..23545327 FT /rpt_family="ALU" FT /note="95% identity: matches 326..390 of consensus" FT repeat_region complement(23545251..23545323) FT /rpt_family="THR" FT /note="90% identity: matches 28..100 of consensus" FT repeat_region complement(23544696..23544949) FT /rpt_family="L1" FT /note="90% identity: matches 249..503 of consensus" FT repeat_region 23544675..23544949 FT /rpt_family="ALU" FT /note="93% identity: matches 305..579 of consensus" FT repeat_region complement(23544581..23544628) FT /rpt_family="ttttttttttttttct repeat" FT /rpt_type=TANDEM FT /note="homology = 89.6%, counts = 3" FT repeat_region complement(23544595..23544617) FT /note="TTTC repeat" FT repeat_region 23544314..23544557 FT /rpt_family="ALU" FT /note="91% identity: matches 159..403 of consensus" FT repeat_region complement(23544303..23544557) FT /rpt_family="L1" FT /note="84% identity: matches 269..526 of consensus" FT repeat_region complement(23541571..23541585) FT /note="AG repeat" FT repeat_region complement(23541340..23541399) FT /rpt_family="ttat repeat" FT /rpt_type=TANDEM FT /note="homology = 85.0%, counts = 15" FT repeat_region complement(23541381..23541395) FT /note="TTATT repeat" FT repeat_region complement(23541338..23541376) FT /note="TTTA repeat" FT repeat_region 23541070..23541336 FT /rpt_family="ALU" FT /note="93% identity: matches 317..583 of consensus" FT repeat_region complement(23541070..23541336) FT /rpt_family="L1" FT /note="88% identity: matches 245..512 of consensus" FT exon 23540824..23540925 FT /note="MZEF prediction, score = 0.652" FT exon complement(23540455..23540498) FT /note="XPOUND prediction, score = 0.337" FT exon complement(23539720..23539744) FT /note="GENSCAN prediction, score = 2.31" FT exon complement(23539673..23539728) FT /note="XPOUND prediction, score = 0.249" FT exon complement(23538375..23538459) FT /note="XPOUND prediction, score = 0.345" FT exon complement(23538369..23538425) FT /note="GENSCAN prediction, score = 2.31" FT exon complement(23538361..23538425) FT /note="MZEF prediction, score = 0.509" FT exon complement(23537401..23537429) FT /note="XPOUND prediction, score = 0.230" FT repeat_region complement(23535342..23535355) FT /note="TTA repeat" FT repeat_region 23534106..23534163 FT /rpt_family="L1" FT /note="96% identity: matches 5..62 of consensus" FT exon complement(23534130..23534148) FT /note="XPOUND prediction, score = 0.380" FT repeat_region complement(23532059..23532177) FT /rpt_family="tattttt repeat" FT /rpt_type=TANDEM FT /note="homology = 64.7%, counts = 17" FT repeat_region complement(23532065..23532094) FT /rpt_type=INVERTED FT /note="IR3, 90% complementary to IR3' (36066..36095)" FT exon complement(23531941..23532062) FT /note="MZEF prediction, score = 0.526" FT exon complement(23531941..23531990) FT /note="XPOUND prediction, score = 0.246" FT repeat_region complement(23531408..23531692) FT /rpt_family="ALU" FT /note="93% identity: matches 1..282 of consensus" FT repeat_region 23531408..23531692 FT /rpt_family="L1" FT /note="88% identity: matches 245..526 of consensus" FT repeat_region complement(23531377..23531406) FT /rpt_type=INVERTED FT /note="IR3', 90% complementary to IR3 (35378..35407)" FT exon 23531135..23531226 FT /note="GENSCAN prediction, score = 1.19" FT /note="MZEF prediction, score = 0.550" FT exon 23530726..23530855 FT /note="GENSCAN prediction, score = 6.95" FT exon 23530674..23530855 FT /note="MZEF prediction, score = 0.939" FT repeat_region complement(23530634..23530655) FT /note="TTAT repeat" FT repeat_region 23530506..23530610 FT /rpt_family="ALU" FT /note="84% identity: matches 942..1046 of consensus" FT repeat_region complement(23530448..23530472) FT /rpt_family="ttttg repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 5" FT repeat_region complement(23530447..23530472) FT /note="TTTTG repeat" FT repeat_region 23530338..23530385 FT /rpt_family="ALU" FT /note="93% identity: matches 9..55 of consensus" FT repeat_region complement(23530201..23530251) FT /note="GT repeat" FT repeat_region complement(23530186..23530251) FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 89.4%, counts = 33" FT repeat_region complement(23530190..23530200) FT /note="CG repeat" FT repeat_region complement(23530055..23530068) FT /note="GTT repeat" FT exon 23529739..23529796 FT /note="MZEF prediction, score = 0.641" FT exon complement(23529153..23529169) FT /note="XPOUND prediction, score = 0.605" FT exon 23528735..23528799 FT /note="MZEF prediction, score = 0.705" FT exon complement(23526288..23526433) FT /note="MZEF prediction, score = 0.750" FT exon complement(23526288..23526336) FT /note="XPOUND prediction, score = 0.543" FT repeat_region complement(23525481..23525493) FT /note="TAT repeat" FT exon complement(23524836..23525067) FT /note="MZEF prediction, score = 0.572" FT exon complement(23524656..23524726) FT /note="XPOUND prediction, score = 0.924" FT repeat_region complement(23523557..23523583) FT /note="GTTTT repeat" FT repeat_region complement(23523349..23523403) FT /rpt_family="MER1" FT /note="89% identity: matches 14..68 of consensus" FT exon 23523205..23523391 FT /note="GENSCAN prediction, score = 1.97" FT repeat_region complement(23523256..23523336) FT /rpt_family="MER1" FT /note="91% identity: matches 86..166 of consensus" FT repeat_region complement(23523126..23523167) FT /rpt_family="MER1" FT /note="92% identity: matches 28..69 of consensus" FT exon 23523106..23523158 FT /note="GENSCAN prediction, score = 1.98" FT exon complement(23522013..23522080) FT /note="MZEF prediction, score = 0.994" FT exon complement(23522013..23522029) FT /note="XPOUND prediction, score = 0.342" FT exon 23521765..23521899 FT /note="MZEF prediction, score = 0.775" FT exon complement(23521310..23521323) FT /note="XPOUND prediction, score = 0.213" FT repeat_region 23519073..23520836 FT /rpt_family="L1" FT /note="89% identity: matches 168..1923 of consensus" FT exon 23519408..23520073 FT /note="GENSCAN prediction, score = 10.62" FT repeat_region complement(23518908..23518919) FT /note="AG repeat" FT repeat_region 23518302..23518659 FT /rpt_family="THE" FT /note="86% identity: matches 1..358 of consensus" FT exon complement(23518116..23518140) FT /note="XPOUND prediction, score = 0.383" FT exon complement(23516272..23516294) FT /note="MZEF prediction, score = 0.888" FT repeat_region complement(23515881..23515935) FT /rpt_type=INVERTED FT /note="IR4, 94% complementary to IR4' (51595..51649)" FT repeat_region complement(23515823..23515877) FT /rpt_type=INVERTED FT /note="IR4', 94% complementary to IR4 (51537..51591)" FT exon complement(23514101..23514111) FT /note="XPOUND prediction, score = 0.213" FT exon complement(23512936..23512989) FT /note="XPOUND prediction, score = 0.537" FT repeat_region complement(23511293..23511342) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 72.0%, counts = 25" FT repeat_region 23510348..23510626 FT /rpt_family="L1" FT /note="86% identity: matches 246..518 of consensus" FT repeat_region complement(23510348..23510624) FT /rpt_family="ALU" FT /note="89% identity: matches 313..582 of consensus" FT exon 23510497..23510501 FT /note="XPOUND prediction, score = 0.303" FT repeat_region complement(23510314..23510344) FT /note="AAAC repeat" FT repeat_region complement(23510301..23510344) FT /rpt_family="aaac repeat" FT /rpt_type=TANDEM FT /note="homology = 88.6%, counts = 11" FT repeat_region complement(23509497..23509559) FT /rpt_family="L1" FT /note="90% identity: matches 1015..1077 of consensus" FT repeat_region 23509000..23509340 FT /rpt_family="THE" FT /note="86% identity: matches 10..356 of consensus" FT repeat_region 23508059..23508984 FT /rpt_family="THR" FT /note="84% identity: matches 590..1513 of consensus" FT exon 23508528..23508564 FT /note="XPOUND prediction, score = 0.495" FT exon 23508289..23508294 FT /note="XPOUND prediction, score = 0.202" FT exon 23508246..23508267 FT /note="XPOUND prediction, score = 0.217" FT exon complement(23508049..23508239) FT /note="GENSCAN prediction, score = 3.58" FT repeat_region 23507459..23507999 FT /rpt_family="THR" FT /note="87% identity: matches 27..568 of consensus" FT exon 23507479..23507718 FT /note="GENSCAN prediction, score = 6.84" FT exon 23507615..23507703 FT /note="XPOUND prediction, score = 0.860" FT repeat_region 23507315..23507432 FT /rpt_family="THE" FT /note="92% identity: matches 256..373 of consensus" FT repeat_region 23507118..23507312 FT /rpt_family="THE" FT /note="87% identity: matches 8..202 of consensus" FT repeat_region complement(23507058..23507116) FT /rpt_family="L1" FT /note="89% identity: matches 801..859 of consensus" FT repeat_region complement(23506224..23506308) FT /rpt_family="L1" FT /note="85% identity: matches 63..147 of consensus" FT repeat_region complement(23505998..23506056) FT /rpt_type=INVERTED FT /note="IR5, 84% complementary to IR5' (62586..62644)" FT repeat_region 23505992..23506043 FT /rpt_family="ALU" FT /note="92% identity: matches 147..198 of consensus" FT repeat_region complement(23505494..23505603) FT /rpt_family="taaaaaaaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 65.5%, counts = 10" FT exon 23505235..23505293 FT /note="MZEF prediction, score = 0.824" FT repeat_region 23504784..23505017 FT /rpt_family="L1" FT /note="82% identity: matches 187..417 of consensus" FT repeat_region complement(23504773..23505017) FT /rpt_family="ALU" FT /note="84% identity: matches 169..412 of consensus" FT repeat_region complement(23504828..23504886) FT /rpt_type=INVERTED FT /note="IR5', 84% complementary to IR5 (61416..61474)" FT repeat_region complement(23504669..23504748) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 77.5%, counts = 40" FT repeat_region complement(23504694..23504721) FT /note="AT repeat" FT repeat_region complement(23504669..23504686) FT /note="TA repeat" FT repeat_region complement(23504444..23504626) FT /rpt_type=INVERTED FT /note="IR6, 84% complementary to IR6' (63035..63210)" FT repeat_region complement(23504591..23504614) FT /note="AT repeat" FT repeat_region complement(23504275..23504614) FT /rpt_family="atatatatatatatata repeat" FT /rpt_type=TANDEM FT /note="homology = 69.1%, counts = 20" FT repeat_region complement(23504523..23504545) FT /note="TA repeat" FT repeat_region complement(23504262..23504437) FT /rpt_type=INVERTED FT /note="IR6', 84% complementary to IR6 (62846..63028)" FT repeat_region complement(23504263..23504291) FT /note="AT repeat" FT exon 23504248..23504261 FT /note="XPOUND prediction, score = 0.725" FT exon 23504221..23504261 FT /note="MZEF prediction, score = 0.673" FT exon 23502826..23503118 FT /note="MZEF prediction, score = 0.732" FT repeat_region complement(23503019..23503109) FT /rpt_family="THE" FT /note="86% identity: matches 4..94 of consensus" FT repeat_region complement(23502838..23502900) FT /rpt_family="THE" FT /note="90% identity: matches 209..271 of consensus" FT repeat_region complement(23502735..23502850) FT /rpt_family="THE" FT /note="89% identity: matches 108..224 of consensus" FT repeat_region complement(23502607..23502633) FT /note="AAAAC repeat" FT repeat_region complement(23500014..23500033) FT /rpt_type=INVERTED FT /note="IR7, 100% complementary to IR7' (67463..67482)" FT repeat_region complement(23499990..23500009) FT /rpt_type=INVERTED FT /note="IR7', 100% complementary to IR7 (67439..67458)" FT repeat_region 23499252..23499321 FT /rpt_family="THE" FT /note="88% identity: matches 113..182 of consensus" FT repeat_region complement(23499096..23499106) FT /note="AG repeat" FT repeat_region 23498900..23498983 FT /rpt_family="THE" FT /note="86% identity: matches 8..90 of consensus" FT exon 23498846..23498899 FT /note="XPOUND prediction, score = 0.534" FT repeat_region complement(23498462..23498742) FT /rpt_family="ALU" FT /note="92% identity: matches 1..280 of consensus" FT repeat_region 23498462..23498742 FT /rpt_family="L1" FT /note="88% identity: matches 246..526 of consensus" FT exon 23494809..23494965 FT /note="MZEF prediction, score = 0.833" FT exon complement(23494905..23494964) FT /note="XPOUND prediction, score = 0.377" FT exon complement(23494158..23494167) FT /note="XPOUND prediction, score = 0.225" FT repeat_region complement(23493371..23493406) FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 91.7%, counts = 18" FT repeat_region complement(23493371..23493402) FT /note="GT repeat" FT exon complement(23492273..23492324) FT /note="XPOUND prediction, score = 0.396" FT exon complement(23492228..23492324) FT /note="GENSCAN prediction, score = 0.96" FT exon complement(23492228..23492238) FT /note="XPOUND prediction, score = 0.273" FT repeat_region complement(23490681..23490752) FT /rpt_family="tttgtttgtttgtttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 84.7%, counts = 4" FT repeat_region complement(23490684..23490706) FT /note="TTTG repeat" FT repeat_region 23490410..23490680 FT /rpt_family="ALU" FT /note="87% identity: matches 11..280 of consensus" FT repeat_region complement(23490414..23490671) FT /rpt_family="L1" FT /note="84% identity: matches 169..424 of consensus" FT repeat_region complement(23488543..23488589) FT /rpt_family="L1" FT /note="91% identity: matches 58..104 of consensus" FT repeat_region complement(23488443..23488545) FT /rpt_family="L1" FT /note="85% identity: matches 71..173 of consensus" FT exon complement(23488436..23488506) FT /note="XPOUND prediction, score = 0.598" FT repeat_region complement(23488324..23488441) FT /rpt_family="L1" FT /note="87% identity: matches 33..150 of consensus" FT exon complement(23485876..23485903) FT /note="XPOUND prediction, score = 0.348" FT repeat_region complement(23484795..23484809) FT /note="TTTA repeat" FT exon 23484695..23484758 FT /note="MZEF prediction, score = 0.865" FT exon complement(23484526..23484535) FT /note="XPOUND prediction, score = 0.261" FT repeat_region complement(23484270..23484398) FT /rpt_family="ALU" FT /note="83% identity: matches 772..898 of consensus" FT exon 23483736..23483841 FT /note="MZEF prediction, score = 0.827" FT exon 23483203..23483321 FT /note="MZEF prediction, score = 0.518" FT exon complement(23482823..23482912) FT /note="GENSCAN prediction, score = 5.85" FT exon complement(23480006..23480033) FT /note="XPOUND prediction, score = 0.245" FT repeat_region complement(23479273..23479525) FT /rpt_type=INVERTED FT /note="IR8, 81% complementary to IR8' (88902..89149)" FT repeat_region complement(23479344..23479492) FT /rpt_family="L1" FT /note="88% identity: matches 245..393 of consensus" FT repeat_region 23479208..23479492 FT /rpt_family="ALU" FT /note="90% identity: matches 1..281 of consensus" FT misc_feature complement(23479211..23479488) FT /note="CpG_island (%GC=59.0, o/e=0.96, #CpGs=24)" FT repeat_region complement(23479208..23479332) FT /rpt_family="L1" FT /note="93% identity: matches 402..526 of consensus" FT repeat_region complement(23478370..23478573) FT /rpt_family="ALU" FT /note="92% identity: matches 10..213 of consensus" FT repeat_region complement(23478323..23478570) FT /rpt_type=INVERTED FT /note="IR8', 81% complementary to IR8 (87947..88199)" FT repeat_region 23478357..23478534 FT /rpt_family="L1" FT /note="83% identity: matches 162..339 of consensus" FT repeat_region complement(23478319..23478354) FT /rpt_family="aaac repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 9" FT repeat_region complement(23478328..23478348) FT /note="ACAA repeat" FT exon 23478095..23478119 FT /note="XPOUND prediction, score = 0.218" FT repeat_region complement(23476861..23476920) FT /rpt_family="tgga repeat" FT /rpt_type=TANDEM FT /note="homology = 98.3%, counts = 15" FT repeat_region complement(23476861..23476920) FT /note="TGGA repeat" FT exon complement(23475302..23475337) FT /note="XPOUND prediction, score = 0.505" FT exon 23475239..23475330 FT /note="XPOUND prediction, score = 0.349" FT exon complement(23475199..23475212) FT /note="XPOUND prediction, score = 0.235" FT repeat_region complement(23475074..23475092) FT /note="TGA repeat" FT repeat_region complement(23474952..23474964) FT /note="AAAT repeat" FT exon 23474380..23474432 FT /note="MZEF prediction, score = 0.532" FT exon 23474079..23474157 FT /note="MZEF prediction, score = 0.746" FT exon complement(23474051..23474077) FT /note="XPOUND prediction, score = 0.388" FT exon 23472788..23472834 FT /note="MZEF prediction, score = 0.898" FT misc_feature 23524172..23722808 FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT exon complement(23567974..23568074) FT /note="GENSCAN prediction, score = 1.31" FT exon complement(23569029..23569187) FT /note="GRAIL, score = 54%, comment = good" FT exon complement(23569451..23569497) FT /note="XPOUND prediction, score = 0.830" FT exon complement(23570285..23570339) FT /note="GRAIL, score = 45%, comment = marginal" FT repeat_region 23571296..23571633 FT /rpt_family="THE" FT /note="81% identity: matches 1..335 of consensus" FT repeat_region 23571559..23571637 FT /rpt_type=INVERTED FT /note="IR4, 80% complementary to IR4' (48795..48872)" FT exon complement(23572696..23572799) FT /note="MZEF prediction, score = 0.806" FT repeat_region 23572707..23572807 FT /rpt_family="ALU" FT /note="88% identity: matches 23..123 of consensus" FT repeat_region 23572815..23572963 FT /rpt_family="ALU" FT /note="82% identity: matches 1036..1183 of consensus" FT repeat_region 23572966..23573043 FT /rpt_type=INVERTED FT /note="IR4', 80% complementary to IR4 (47388..47466)" FT repeat_region complement(23572966..23573064) FT /rpt_family="THE" FT /note="87% identity: matches 110..208 of consensus" FT exon 23573042..23573150 FT /note="GRAIL, score = 66%, comment = good" FT repeat_region complement(23573058..23573091) FT /rpt_family="THE" FT /note="97% identity: matches 99..132 of consensus" FT repeat_region complement(23573236..23573333) FT /rpt_family="THE" FT /note="87% identity: matches 1..97 of consensus" FT repeat_region 23573338..23573351 FT /note="AAC repeat" FT repeat_region 23573494..23573531 FT /rpt_type=INVERTED FT /note="IR5, 86% complementary to IR5' (49363..49400)" FT repeat_region 23573494..23573559 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 89.4%, counts = 33" FT repeat_region 23573506..23573560 FT /note="TA repeat" FT repeat_region 23573534..23573571 FT /rpt_type=INVERTED FT /note="IR5', 86% complementary to IR5 (49323..49360)" FT repeat_region 23575015..23575030 FT /note="CA repeat" FT exon complement(23575646..23575722) FT /note="MZEF prediction, score = 0.779" FT repeat_region 23576318..23576333 FT /note="TAT repeat" FT exon complement(23576487..23576496) FT /note="XPOUND prediction, score = 0.224" FT exon complement(23576622..23576643) FT /note="XPOUND prediction, score = 0.216" FT exon 23577084..23577189 FT /note="MZEF prediction, score = 0.569" FT repeat_region complement(23577091..23577376) FT /rpt_family="L1" FT /note="82% identity: matches 250..526 of consensus" FT repeat_region 23577093..23577376 FT /rpt_family="ALU" FT /note="86% identity: matches 305..578 of consensus" FT exon complement(23578106..23578279) FT /note="GRAIL, score = 52%, comment = good" FT exon 23580335..23580377 FT /note="GRAIL, score = 73%, comment = good" FT exon complement(23581127..23581175) FT /note="GENSCAN prediction, score = 4.96" FT exon complement(23582218..23582228) FT /note="XPOUND prediction, score = 0.249" FT exon 23582542..23582716 FT /note="GRAIL, score = 57%, comment = good" FT exon complement(23582807..23582846) FT /note="XPOUND prediction, score = 0.332" FT repeat_region 23583938..23584042 FT /rpt_family="ALU" FT /note="89% identity: matches 480..584 of consensus" FT repeat_region complement(23583973..23584042) FT /rpt_family="L1" FT /note="92% identity: matches 469..538 of consensus" FT repeat_region 23584069..23584207 FT /rpt_family="ALU" FT /note="88% identity: matches 177..314 of consensus" FT repeat_region complement(23584081..23584207) FT /rpt_family="L1" FT /note="86% identity: matches 161..286 of consensus" FT repeat_region 23584526..23584606 FT /rpt_family="agggaaaga repeat" FT /rpt_type=TANDEM FT /note="homology = 69.1%, counts = 9" FT repeat_region 23584581..23584594 FT /note="GGAAG repeat" FT exon complement(23585149..23585210) FT /note="XPOUND prediction, score = 0.396" FT exon complement(23586297..23586344) FT /note="XPOUND prediction, score = 0.471" FT exon complement(23586496..23586547) FT /note="MZEF prediction, score = 0.772" FT repeat_region 23586858..23586871 FT /note="AAAC repeat" FT exon complement(23587050..23587052) FT /note="XPOUND prediction, score = 0.244" FT exon 23589008..23589106 FT /note="GRAIL, score = 51%, comment = good" FT repeat_region 23589216..23589237 FT /rpt_type=INVERTED FT /note="IR6, 100% complementary to IR6' (65069..65090)" FT repeat_region 23589219..23589258 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 20" FT repeat_region 23589219..23589258 FT /note="TA repeat" FT repeat_region 23589240..23589261 FT /rpt_type=INVERTED FT /note="IR6', 100% complementary to IR6 (65045..65066)" FT repeat_region 23590387..23590406 FT /note="AG repeat" FT exon 23590907..23591017 FT /note="GRAIL, score = 91%, comment = excellent" FT /note="MZEF prediction, score = 0.864" FT exon complement(23592219..23592290) FT /note="GRAIL, score = 66%, comment = good" FT exon 23592483..23592538 FT /note="MZEF prediction, score = 0.864" FT exon complement(23592598..23592626) FT /note="XPOUND prediction, score = 0.260" FT exon complement(23593048..23593232) FT /note="GRAIL, score = 70%, comment = good" FT exon complement(23593122..23593185) FT /note="XPOUND prediction, score = 0.222" FT repeat_region complement(23595031..23595163) FT /rpt_family="L1" FT /note="82% identity: matches 85..219 of consensus" FT exon complement(23596195..23596213) FT /note="XPOUND prediction, score = 0.308" FT exon complement(23596264..23596280) FT /note="XPOUND prediction, score = 0.351" FT repeat_region 23596896..23596925 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 15" FT repeat_region 23596896..23596926 FT /note="AC repeat" FT exon complement(23597657..23597707) FT /note="XPOUND prediction, score = 0.332" FT repeat_region 23597658..23597729 FT /rpt_family="gta repeat" FT /rpt_type=TANDEM FT /note="homology = 73.6%, counts = 24" FT exon 23598383..23598495 FT /note="MZEF prediction, score = 0.899" FT repeat_region 23598456..23598467 FT /note="AC repeat" FT exon complement(23598651..23598753) FT /note="MZEF prediction, score = 0.525" FT exon complement(23599267..23599300) FT /note="XPOUND prediction, score = 0.243" FT repeat_region 23599465..23599494 FT /rpt_type=INVERTED FT /note="IR7, 90% complementary to IR7' (75326..75355)" FT repeat_region 23599470..23599484 FT /note="TG repeat" FT repeat_region 23599470..23599551 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 75.6%, counts = 41" FT repeat_region 23599485..23599499 FT /note="AT repeat" FT repeat_region 23599497..23599526 FT /rpt_type=INVERTED FT /note="IR7', 90% complementary to IR7 (75294..75323)" FT repeat_region 23599507..23599521 FT /note="AC repeat" FT repeat_region 23599522..23599535 FT /note="TA repeat" FT exon complement(23599898..23599952) FT /note="XPOUND prediction, score = 0.253" FT exon complement(23601015..23601033) FT /note="XPOUND prediction, score = 0.381" FT exon complement(23601577..23601648) FT /note="XPOUND prediction, score = 0.298" FT exon complement(23602860..23602893) FT /note="GRAIL, score = 51%, comment = good" FT exon complement(23602949..23603018) FT /note="MZEF prediction, score = 0.902" FT exon complement(23603375..23603443) FT /note="GENSCAN prediction, score = 2.76" FT /note="GRAIL, score = 68%, comment = good" FT exon complement(23603379..23603447) FT /note="XPOUND prediction, score = 0.495" FT exon complement(23603538..23603593) FT /note="XPOUND prediction, score = 0.243" FT exon complement(23603538..23603617) FT /note="GRAIL, score = 59%, comment = good" FT repeat_region 23603932..23603976 FT /rpt_family="tttctttcttttctt repeat" FT /rpt_type=TANDEM FT /note="homology = 88.9%, counts = 3" FT repeat_region 23603941..23603970 FT /rpt_type=INVERTED FT /note="IR8, 86% complementary to IR8' (80933..80962)" FT repeat_region 23603984..23604260 FT /rpt_family="L1" FT /note="84% identity: matches 657..936 of consensus" FT repeat_region complement(23603995..23604259) FT /rpt_family="ALU" FT /note="88% identity: matches 1..265 of consensus" FT repeat_region complement(23604697..23604746) FT /rpt_family="MER17" FT /note="94% identity: matches 239..288 of consensus" FT repeat_region complement(23604759..23604858) FT /rpt_family="MER7" FT /note="88% identity: matches 14..112 of consensus" FT exon complement(23605054..23605099) FT /note="GRAIL, score = 70%, comment = good" FT repeat_region 23605104..23605133 FT /rpt_type=INVERTED FT /note="IR8', 86% complementary to IR8 (79770..79799)" FT exon complement(23605371..23605382) FT /note="XPOUND prediction, score = 0.204" FT exon complement(23605890..23606004) FT /note="GRAIL, score = 40%, comment = marginal" FT exon complement(23605978..23606014) FT /note="XPOUND prediction, score = 0.362" FT repeat_region 23606148..23606187 FT /rpt_family="acag repeat" FT /rpt_type=TANDEM FT /note="homology = 82.5%, counts = 10" FT repeat_region 23606173..23606188 FT /note="CAGA repeat" FT repeat_region 23606936..23607029 FT /rpt_family="ga repeat" FT /rpt_type=TANDEM FT /note="homology = 74.5%, counts = 47" FT repeat_region 23606961..23606984 FT /note="AC repeat" FT repeat_region 23606991..23607025 FT /note="AG repeat" FT exon 23607710..23607758 FT /note="MZEF prediction, score = 0.728" FT repeat_region 23609299..23609313 FT /note="AC repeat" FT repeat_region 23609299..23609315 FT /rpt_type=INVERTED FT /note="IR9, 100% complementary to IR9' (86567..86583)" FT exon complement(23609784..23609829) FT /note="GRAIL, score = 68%, comment = good" FT exon complement(23610620..23610692) FT /note="GRAIL, score = 72%, comment = good shadow" FT repeat_region 23610738..23610754 FT /rpt_type=INVERTED FT /note="IR9', 100% complementary to IR9 (85128..85144)" FT repeat_region 23610740..23610763 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 12" FT repeat_region 23610740..23610764 FT /note="TG repeat" FT repeat_region 23610977..23610990 FT /note="AAGG repeat" FT exon complement(23611164..23611192) FT /note="XPOUND prediction, score = 0.229" FT exon 23611350..23611599 FT /note="GRAIL, score = 70%, comment = good" FT exon complement(23611441..23611543) FT /note="GRAIL, score = 84%, comment = excellent shadow" FT repeat_region 23611930..23611971 FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 92.9%, counts = 21" FT repeat_region 23611934..23611971 FT /note="GT repeat" FT repeat_region 23614011..23614021 FT /note="TA repeat" FT repeat_region 23614186..23614213 FT /note="AAACA repeat" FT repeat_region 23614186..23614215 FT /rpt_family="aaaca repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 6" FT repeat_region 23614318..23614446 FT /rpt_family="ALU" FT /note="86% identity: matches 174..300 of consensus" FT repeat_region complement(23614333..23614606) FT /rpt_family="L1" FT /note="81% identity: matches 162..423 of consensus" FT repeat_region 23614481..23614599 FT /rpt_family="ALU" FT /note="89% identity: matches 333..451 of consensus" FT repeat_region 23614607..23614631 FT /rpt_family="caaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 5" FT repeat_region 23614607..23614631 FT /note="CAAAA repeat" FT exon 23615011..23615250 FT /note="GRAIL, score = 60%, comment = good" FT repeat_region 23615382..23615405 FT /rpt_type=INVERTED FT /note="IR10, 87% complementary to IR10' (91241..91264)" FT repeat_region 23615383..23615394 FT /note="AT repeat" FT repeat_region 23615383..23615434 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 80.8%, counts = 26" FT repeat_region 23615412..23615435 FT /rpt_type=INVERTED FT /note="IR10', 87% complementary to IR10 (91211..91234)" FT repeat_region 23615414..23615434 FT /note="TA repeat" FT exon complement(23615604..23615741) FT /note="GRAIL, score = 50%, comment = good shadow" FT exon complement(23615690..23615741) FT /note="XPOUND prediction, score = 0.522" FT exon complement(23616845..23616880) FT /note="XPOUND prediction, score = 0.399" FT exon complement(23616845..23616901) FT /note="GENSCAN prediction, score = 4.76" FT repeat_region 23616964..23617241 FT /rpt_family="L1" FT /note="80% identity: matches 237..515 of consensus" FT repeat_region complement(23616980..23617241) FT /rpt_family="ALU" FT /note="85% identity: matches 11..271 of consensus" FT exon complement(23621145..23621155) FT /note="XPOUND prediction, score = 0.232" FT exon 23621628..23621684 FT /note="MZEF prediction, score = 0.543" FT exon complement(23623069..23623096) FT /note="XPOUND prediction, score = 0.367" FT exon 23623333..23623471 FT /note="GRAIL, score = 77%, comment = excellent" FT repeat_region 23623759..23623785 FT /rpt_type=INVERTED FT /note="IR11, 88% complementary to IR11' (99672..99698)" FT repeat_region 23623843..23623869 FT /rpt_type=INVERTED FT /note="IR11', 88% complementary to IR11 (99588..99614)" FT exon complement(23624155..23624170) FT /note="XPOUND prediction, score = 0.301" FT exon complement(23624202..23624211) FT /note="XPOUND prediction, score = 0.209" FT exon 23624587..23624659 FT /note="GRAIL, score = 87%, comment = excellent" FT repeat_region 23625550..23625562 FT /note="TGAA repeat" FT exon 23626185..23626236 FT /note="GRAIL, score = 60%, comment = good" FT repeat_region 23626326..23627438 FT /rpt_family="L1" FT /note="88% identity: matches 333..1447 of consensus" FT exon 23626351..23626565 FT /note="GRAIL, score = 62%, comment = good" FT repeat_region 23627440..23627463 FT /rpt_type=INVERTED FT /note="IR12, 100% complementary to IR12' (103295..103318)" FT repeat_region 23627440..23627489 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 25" FT repeat_region 23627440..23627489 FT /note="TA repeat" FT repeat_region 23627466..23627489 FT /rpt_type=INVERTED FT /note="IR12', 100% complementary to IR12 (103269..103292)" FT exon complement(23627712..23627747) FT /note="XPOUND prediction, score = 0.305" FT repeat_region 23628674..23628793 FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 70.8%, counts = 60" FT repeat_region 23628695..23628732 FT /note="AC repeat" FT repeat_region 23628765..23628794 FT /note="AC repeat" FT exon complement(23628801..23628824) FT /note="XPOUND prediction, score = 0.329" FT exon complement(23628801..23628866) FT /note="MZEF prediction, score = 0.656" FT exon complement(23631056..23631085) FT /note="XPOUND prediction, score = 0.374" FT exon 23631958..23631963 FT /note="GENSCAN prediction, score = 0.33" FT exon 23632047..23632166 FT /note="GENSCAN prediction, score = 3.27" FT /note="GRAIL, score = 94%, comment = excellent" FT repeat_region 23632942..23632957 FT /note="AAAT repeat" FT exon 23633308..23633399 FT /note="GRAIL, score = 100%, comment = excellent" FT /note="MZEF prediction, score = 0.702" FT repeat_region 23633953..23633977 FT /rpt_family="taaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 5" FT repeat_region 23633953..23633977 FT /note="TAAAA repeat" FT exon 23634121..23634189 FT /note="MZEF prediction, score = 0.712" FT exon 23634276..23634329 FT /note="MZEF prediction, score = 0.667" FT exon complement(23634461..23634480) FT /note="XPOUND prediction, score = 0.270" FT exon 23635711..23635747 FT /note="GRAIL, score = 56%, comment = good" FT exon complement(23636351..23636405) FT /note="XPOUND prediction, score = 0.434" FT repeat_region 23637212..23637243 FT /note="CAAC repeat" FT repeat_region 23637212..23637251 FT /rpt_family="caac repeat" FT /rpt_type=TANDEM FT /note="homology = 92.5%, counts = 10" FT exon complement(23637381..23637404) FT /note="XPOUND prediction, score = 0.272" FT exon complement(23637899..23637936) FT /note="XPOUND prediction, score = 0.294" FT repeat_region 23638729..23638930 FT /rpt_family="ALU" FT /note="84% identity: matches 404..604 of consensus" FT repeat_region complement(23638730..23638928) FT /rpt_family="L1" FT /note="81% identity: matches 230..424 of consensus" FT repeat_region 23638933..23638984 FT /rpt_family="ALU" FT /note="92% identity: matches 641..692 of consensus" FT repeat_region 23639011..23639053 FT /note="AAAT repeat" FT repeat_region 23639011..23639054 FT /rpt_family="aaat repeat" FT /rpt_type=TANDEM FT /note="homology = 97.7%, counts = 11" FT repeat_region 23639237..23639261 FT /rpt_type=INVERTED FT /note="IR13, 88% complementary to IR13' (116321..116345)" FT exon complement(23639622..23639674) FT /note="XPOUND prediction, score = 0.402" FT repeat_region 23640477..23640496 FT /note="AT repeat" FT repeat_region 23640477..23640568 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 69.6%, counts = 46" FT repeat_region 23640492..23640516 FT /rpt_type=INVERTED FT /note="IR13', 88% complementary to IR13 (115066..115090)" FT repeat_region 23640516..23640528 FT /note="TA repeat" FT repeat_region 23640548..23640568 FT /note="TA repeat" FT exon 23640603..23640738 FT /note="MZEF prediction, score = 0.696" FT exon 23641400..23641507 FT /note="GENSCAN prediction, score = 0.18" FT repeat_region 23642937..23642992 FT /rpt_family="ttatttttaatata repeat" FT /rpt_type=TANDEM FT /note="homology = 82.1%, counts = 4" FT exon 23644025..23644202 FT /note="GENSCAN prediction, score = 7.00" FT /note="MZEF prediction, score = 0.991" FT exon 23644056..23644202 FT /note="GRAIL, score = 78%, comment = excellent" FT exon complement(23644466..23644531) FT /note="XPOUND prediction, score = 0.268" FT exon 23644690..23644797 FT /note="GRAIL, score = 88%, comment = excellent" FT exon complement(23645083..23645128) FT /note="XPOUND prediction, score = 0.457" FT exon complement(23645257..23645295) FT /note="MZEF prediction, score = 0.527" FT repeat_region 23645679..23645693 FT /note="TGGG repeat" FT repeat_region 23645679..23645740 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 83.9%, counts = 31" FT repeat_region 23645700..23645741 FT /note="GT repeat" FT exon complement(23646123..23646168) FT /note="XPOUND prediction, score = 0.495" FT repeat_region complement(23646294..23646346) FT /rpt_family="ALU" FT /note="92% identity: matches 1215..1267 of consensus" FT repeat_region complement(23646358..23646473) FT /rpt_family="ALU" FT /note="93% identity: matches 157..271 of consensus" FT repeat_region 23646361..23646473 FT /rpt_family="L1" FT /note="88% identity: matches 464..575 of consensus" FT exon complement(23646394..23646420) FT /note="XPOUND prediction, score = 0.436" FT repeat_region complement(23646479..23646510) FT /rpt_family="ALU" FT /note="100% identity: matches 328..359 of consensus" FT exon 23646696..23646772 FT /note="GENSCAN prediction, score = 3.09" FT /note="MZEF prediction, score = 0.723" FT repeat_region 23647411..23647422 FT /note="CA repeat" FT exon complement(23648094..23648119) FT /note="XPOUND prediction, score = 0.287" FT repeat_region 23648602..23648647 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 23" FT repeat_region 23648602..23648647 FT /note="AC repeat" FT exon 23648798..23648927 FT /note="GRAIL, score = 77%, comment = excellent" FT repeat_region 23649009..23649069 FT /rpt_family="THE" FT /note="90% identity: matches 120..180 of consensus" FT repeat_region 23649048..23649096 FT /rpt_family="THE" FT /note="91% identity: matches 7..55 of consensus" FT repeat_region 23650178..23650217 FT /rpt_family="ALU" FT /note="95% identity: matches 478..517 of consensus" FT repeat_region 23650190..23650228 FT /rpt_type=INVERTED FT /note="IR14, 82% complementary to IR14' (126257..126295)" FT repeat_region complement(23650242..23650276) FT /rpt_family="ALU" FT /note="97% identity: matches 219..253 of consensus" FT repeat_region complement(23650282..23650526) FT /rpt_family="ALU" FT /note="91% identity: matches 10..253 of consensus" FT repeat_region 23650282..23650526 FT /rpt_family="L1" FT /note="90% identity: matches 274..517 of consensus" FT exon complement(23650427..23650701) FT /note="MZEF prediction, score = 0.709" FT repeat_region 23650428..23650466 FT /rpt_type=INVERTED FT /note="IR14', 82% complementary to IR14 (126019..126057)" FT exon complement(23650440..23650473) FT /note="XPOUND prediction, score = 0.227" FT repeat_region 23650546..23650680 FT /rpt_family="ALU" FT /note="82% identity: matches 603..742 of consensus" FT exon complement(23650654..23650675) FT /note="XPOUND prediction, score = 0.297" FT exon complement(23650995..23651151) FT /note="MZEF prediction, score = 0.820" FT exon complement(23651358..23651453) FT /note="GENSCAN prediction, score = 6.09" FT exon complement(23651395..23651453) FT /note="XPOUND prediction, score = 0.574" FT exon complement(23651608..23651646) FT /note="MZEF prediction, score = 0.518" FT exon 23652202..23652286 FT /note="MZEF prediction, score = 0.658" FT exon complement(23652492..23652524) FT /note="XPOUND prediction, score = 0.346" FT repeat_region complement(23652522..23652577) FT /rpt_family="L1" FT /note="89% identity: matches 8..65 of consensus" FT exon 23652786..23652819 FT /note="XPOUND prediction, score = 0.208" FT repeat_region complement(23653478..23653618) FT /rpt_family="L1" FT /note="81% identity: matches 173..313 of consensus" FT repeat_region 23654211..23654224 FT /note="TTTG repeat" FT exon complement(23654233..23654261) FT /note="XPOUND prediction, score = 0.407" FT exon 23654583..23654702 FT /note="GRAIL, score = 54%, comment = good" FT exon complement(23655428..23655439) FT /note="XPOUND prediction, score = 0.216" FT exon complement(23657077..23657167) FT /note="XPOUND prediction, score = 0.458" FT repeat_region 23657200..23657461 FT /rpt_family="ALU" FT /note="89% identity: matches 1..258 of consensus" FT repeat_region complement(23657222..23657463) FT /rpt_family="L1" FT /note="86% identity: matches 181..416 of consensus" FT repeat_region 23658068..23658216 FT /rpt_type=INVERTED FT /note="IR15, 99% complementary to IR15' (134665..134801)" FT repeat_region 23658836..23658972 FT /rpt_type=INVERTED FT /note="IR15', 99% complementary to IR15 (133897..134045)" FT exon complement(23659058..23659131) FT /note="XPOUND prediction, score = 0.826" FT exon complement(23659443..23659675) FT /note="GRAIL, score = 76%, comment = excellent" FT exon complement(23659485..23659593) FT /note="XPOUND prediction, score = 0.310" FT exon complement(23659598..23659643) FT /note="XPOUND prediction, score = 0.248" FT exon complement(23660656..23660672) FT /note="XPOUND prediction, score = 0.202" FT repeat_region 23660839..23660955 FT /rpt_type=INVERTED FT /note="IR16, 75% complementary to IR16' (137136..137253)" FT repeat_region 23661307..23661424 FT /rpt_type=INVERTED FT /note="IR16', 75% complementary to IR16 (136668..136784)" FT exon complement(23661683..23661691) FT /note="XPOUND prediction, score = 0.207" FT exon complement(23661683..23661745) FT /note="MZEF prediction, score = 0.971" FT exon complement(23661683..23661755) FT /note="GRAIL, score = 69%, comment = good" FT exon complement(23662097..23662189) FT /note="MZEF prediction, score = 0.921" FT exon complement(23662564..23662673) FT /note="GRAIL, score = 70%, comment = good" FT exon complement(23662984..23663089) FT /note="GRAIL, score = 85%, comment = excellent" FT exon complement(23663508..23663664) FT /note="GENSCAN prediction, score = 7.09" FT repeat_region 23664518..23664541 FT /rpt_type=INVERTED FT /note="IR17, 100% complementary to IR17' (141955..141978)" FT exon 23664888..23664960 FT /note="GRAIL, score = 88%, comment = excellent shadow" FT repeat_region 23665975..23666039 FT /rpt_family="ALU" FT /note="87% identity: matches 5..69 of consensus" FT repeat_region 23666019..23666085 FT /rpt_family="ALU" FT /note="89% identity: matches 519..583 of consensus" FT repeat_region 23666126..23666149 FT /rpt_type=INVERTED FT /note="IR17', 100% complementary to IR17 (140347..140370)" FT exon complement(23666275..23666284) FT /note="XPOUND prediction, score = 0.222" FT exon 23667128..23667267 FT /note="GRAIL, score = 56%, comment = good" FT exon complement(23667807..23667849) FT /note="XPOUND prediction, score = 0.403" FT exon 23668164..23668234 FT /note="GRAIL, score = 62%, comment = good" FT exon complement(23669256..23669338) FT /note="XPOUND prediction, score = 0.804" FT exon complement(23669282..23669331) FT /note="GRAIL, score = 44%, comment = marginal" FT exon complement(23669282..23669386) FT /note="GENSCAN prediction, score = 3.09" FT repeat_region 23670863..23670908 FT /note="AAAAC repeat" FT repeat_region 23670863..23670917 FT /rpt_family="aaaac repeat" FT /rpt_type=TANDEM FT /note="homology = 78.2%, counts = 11" FT repeat_region 23670946..23671047 FT /rpt_family="MER30" FT /note="88% identity: matches 1..103 of consensus" FT repeat_region 23670985..23670996 FT /note="GAA repeat" FT repeat_region 23671084..23671153 FT /rpt_family="MER30" FT /note="90% identity: matches 145..214 of consensus" FT exon complement(23671089..23671234) FT /note="GRAIL, score = 81%, comment = excellent" FT exon 23671097..23671203 FT /note="MZEF prediction, score = 0.707" FT exon complement(23671704..23671726) FT /note="XPOUND prediction, score = 0.484" FT exon complement(23672287..23672398) FT /note="GENSCAN prediction, score = 6.72" FT /note="GRAIL, score = 58%, comment = good" FT exon complement(23672287..23672406) FT /note="MZEF prediction, score = 0.538" FT exon complement(23672581..23672700) FT /note="MZEF prediction, score = 0.533" FT exon complement(23672656..23672690) FT /note="XPOUND prediction, score = 0.564" FT repeat_region 23673107..23673118 FT /note="TAA repeat" FT exon complement(23674116..23674176) FT /note="GRAIL, score = 45%, comment = marginal" FT exon complement(23675032..23675087) FT /note="MZEF prediction, score = 0.944" FT exon complement(23675400..23675419) FT /note="XPOUND prediction, score = 0.372" FT exon complement(23675912..23675949) FT /note="MZEF prediction, score = 0.605" FT exon 23676851..23677246 FT /note="GRAIL, score = 56%, comment = good" FT exon complement(23676879..23676973) FT /note="GRAIL, score = 59%, comment = good shadow" FT repeat_region 23676966..23677313 FT /rpt_family="L1" FT /note="85% identity: matches 223..567 of consensus" FT repeat_region 23677319..23677356 FT /rpt_family="L1" FT /note="97% identity: matches 584..621 of consensus" FT exon 23677969..23678017 FT /note="MZEF prediction, score = 0.853" FT exon complement(23678262..23678274) FT /note="XPOUND prediction, score = 0.278" FT repeat_region 23679188..23679245 FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 87.9%, counts = 29" FT repeat_region 23679190..23679212 FT /note="AC repeat" FT repeat_region 23679213..23679224 FT /note="GA repeat" FT repeat_region 23679225..23679245 FT /note="CA repeat" FT repeat_region 23679526..23679570 FT /rpt_family="aaaac repeat" FT /rpt_type=TANDEM FT /note="homology = 82.2%, counts = 9" FT exon 23679691..23679782 FT /note="GRAIL, score = 65%, comment = good" FT exon 23679731..23679782 FT /note="MZEF prediction, score = 0.828" FT repeat_region 23680266..23680279 FT /note="GAG repeat" FT exon 23681895..23682205 FT /note="GENSCAN prediction, score = 9.23" FT exon 23681895..23682209 FT /note="GRAIL, score = 63%, comment = good" FT exon complement(23681923..23682033) FT /note="XPOUND prediction, score = 0.271" FT exon complement(23681948..23682116) FT /note="GRAIL, score = 54%, comment = good shadow" FT exon 23682233..23682796 FT /note="GRAIL, score = 65%, comment = good" FT exon 23682271..23682796 FT /note="GENSCAN prediction, score = 28.25" FT exon complement(23682575..23682593) FT /note="XPOUND prediction, score = 0.238" FT exon complement(23682681..23682941) FT /note="MZEF prediction, score = 0.567" FT exon complement(23683252..23683286) FT /note="XPOUND prediction, score = 0.244" FT exon complement(23684114..23684178) FT /note="GRAIL, score = 98%, comment = excellent shadow" FT repeat_region complement(23684434..23684534) FT /rpt_family="L1" FT /note="90% identity: matches 325..423 of consensus" FT repeat_region 23684440..23684534 FT /rpt_family="ALU" FT /note="93% identity: matches 160..254 of consensus" FT repeat_region 23684537..23684568 FT /rpt_family="acaa repeat" FT /rpt_type=TANDEM FT /note="homology = 90.6%, counts = 8" FT repeat_region 23684547..23684569 FT /note="AAAC repeat" FT repeat_region 23684575..23684690 FT /rpt_family="ALU" FT /note="88% identity: matches 139..256 of consensus" FT repeat_region complement(23684618..23684690) FT /rpt_family="L1" FT /note="90% identity: matches 186..258 of consensus" FT exon complement(23685805..23685860) FT /note="MZEF prediction, score = 0.942" FT exon complement(23686246..23686282) FT /note="XPOUND prediction, score = 0.217" FT exon complement(23686490..23686513) FT /note="XPOUND prediction, score = 0.266" FT exon complement(23687369..23687451) FT /note="GRAIL, score = 62%, comment = good" FT exon complement(23687519..23687626) FT /note="MZEF prediction, score = 0.568" FT exon complement(23688136..23688201) FT /note="XPOUND prediction, score = 0.826" FT exon complement(23689729..23689842) FT /note="GRAIL, score = 61%, comment = good" FT exon complement(23690092..23690129) FT /note="MZEF prediction, score = 0.748" FT exon 23692520..23692926 FT /note="GRAIL, score = 57%, comment = good" FT exon complement(23692555..23692882) FT /note="GENSCAN prediction, score = 23.40" FT /note="GRAIL, score = 79%, comment = excellent shadow" FT exon complement(23692577..23692811) FT /note="XPOUND prediction, score = 0.734" FT exon complement(23693203..23693221) FT /note="XPOUND prediction, score = 0.368" FT exon complement(23693446..23693484) FT /note="MZEF prediction, score = 0.671" FT exon 23694135..23694228 FT /note="GRAIL, score = 96%, comment = excellent" FT repeat_region 23694872..23694884 FT /note="GT repeat" FT exon 23695412..23695533 FT /note="GRAIL, score = 49%, comment = marginal" FT repeat_region 23695675..23695750 FT /rpt_family="MER7" FT /note="87% identity: matches 15..91 of consensus" FT repeat_region 23696468..23696482 FT /note="TTTA repeat" FT repeat_region 23696485..23696762 FT /rpt_family="L1" FT /note="84% identity: matches 245..521 of consensus" FT repeat_region complement(23696485..23696763) FT /rpt_family="ALU" FT /note="89% identity: matches 5..282 of consensus" FT exon complement(23696681..23696693) FT /note="XPOUND prediction, score = 0.204" FT exon 23696817..23696882 FT /note="MZEF prediction, score = 0.504" FT exon complement(23696995..23697023) FT /note="XPOUND prediction, score = 0.333" FT exon complement(23699323..23699339) FT /note="XPOUND prediction, score = 0.226" FT exon complement(23699714..23699766) FT /note="XPOUND prediction, score = 0.383" FT exon 23700893..23700983 FT /note="MZEF prediction, score = 0.820" FT exon complement(23701377..23701602) FT /note="GENSCAN prediction, score = 17.12" FT /note="GRAIL, score = 72%, comment = good" FT /note="MZEF prediction, score = 0.999" FT exon complement(23701416..23701575) FT /note="XPOUND prediction, score = 0.549" FT exon complement(23702307..23702343) FT /note="XPOUND prediction, score = 0.246" FT repeat_region 23703729..23703740 FT /note="TAT repeat" FT repeat_region complement(23703972..23704224) FT /rpt_family="ALU" FT /note="87% identity: matches 402..654 of consensus" FT repeat_region 23704042..23704229 FT /rpt_family="L1" FT /note="85% identity: matches 746..935 of consensus" FT exon complement(23704447..23704676) FT /note="GRAIL, score = 64%, comment = good" FT exon complement(23704916..23705069) FT /note="GENSCAN prediction, score = 18.72" FT /note="GRAIL, score = 100%, comment = excellent" FT /note="MZEF prediction, score = 0.996" FT exon complement(23705119..23705175) FT /note="GRAIL, score = 90%, comment = excellent" FT exon complement(23705516..23705538) FT /note="XPOUND prediction, score = 0.205" FT repeat_region 23705555..23705637 FT /rpt_family="MER1" FT /note="92% identity: matches 2..84 of consensus" FT exon complement(23705575..23705626) FT /note="GRAIL, score = 53%, comment = good" FT repeat_region 23705637..23705752 FT /rpt_family="MER1" FT /note="85% identity: matches 271..386 of consensus" FT exon 23708093..23708225 FT /note="MZEF prediction, score = 0.507" FT repeat_region 23708655..23708785 FT /rpt_family="L1" FT /note="87% identity: matches 157..288 of consensus" FT repeat_region complement(23708655..23708796) FT /rpt_family="ALU" FT /note="91% identity: matches 143..286 of consensus" FT repeat_region complement(23708819..23708925) FT /rpt_family="ALU" FT /note="89% identity: matches 401..507 of consensus" FT repeat_region 23708826..23708924 FT /rpt_family="L1" FT /note="88% identity: matches 487..585 of consensus" FT exon complement(23708835..23708847) FT /note="XPOUND prediction, score = 0.635" FT exon complement(23709179..23709274) FT /note="MZEF prediction, score = 0.547" FT repeat_region 23710090..23710103 FT /note="AGACT repeat" FT exon complement(23710369..23710459) FT /note="GRAIL, score = 60%, comment = good" FT exon complement(23712240..23712375) FT /note="GRAIL, score = 51%, comment = good" FT exon 23713167..23713222 FT /note="MZEF prediction, score = 0.805" FT repeat_region complement(23715193..23715440) FT /rpt_family="ALU" FT /note="92% identity: matches 308..555 of consensus" FT repeat_region 23715193..23715440 FT /rpt_family="L1" FT /note="88% identity: matches 273..521 of consensus" FT repeat_region 23716076..23716168 FT /rpt_family="L1" FT /note="94% identity: matches 1681..1773 of consensus" FT repeat_region 23716182..23716312 FT /rpt_family="L1" FT /note="97% identity: matches 1254..1384 of consensus" FT repeat_region 23716473..23716487 FT /note="AAAAC repeat" FT repeat_region complement(23719846..23720124) FT /rpt_family="ALU" FT /note="84% identity: matches 1..277 of consensus" FT exon complement(23719852..23719898) FT /note="XPOUND prediction, score = 0.452" FT repeat_region 23719887..23720110 FT /rpt_family="L1" FT /note="87% identity: matches 206..424 of consensus" FT exon complement(23720027..23720048) FT /note="XPOUND prediction, score = 0.239" FT repeat_region 23720211..23720369 FT /rpt_family="L1" FT /note="83% identity: matches 183..339 of consensus" FT repeat_region complement(23720211..23720379) FT /rpt_family="ALU" FT /note="87% identity: matches 92..258 of consensus" FT exon 23720355..23720442 FT /note="MZEF prediction, score = 0.578" FT exon complement(23720369..23720387) FT /note="XPOUND prediction, score = 0.227" FT repeat_region 23720409..23720443 FT /rpt_family="L1" FT /note="100% identity: matches 383..417 of consensus" FT repeat_region complement(23720418..23720459) FT /rpt_family="ALU" FT /note="97% identity: matches 402..443 of consensus" FT exon complement(23720839..23720928) FT /note="GENSCAN prediction, score = 3.34" FT repeat_region complement(23721737..23721779) FT /rpt_family="MER28" FT /note="97% identity: matches 32..74 of consensus" FT repeat_region complement(23721880..23721955) FT /rpt_family="MER28" FT /note="92% identity: matches 68..143 of consensus" FT exon complement(23722264..23722305) FT /note="GRAIL, score = 74%, comment = good" FT exon complement(23722399..23722490) FT /note="GRAIL, score = 54%, comment = good" FT exon 23722789..23722808 FT /note="XPOUND prediction, score = 0.252" FT misc_feature 23722809..23833246 FT /note="annotated region of clone" FT mRNA complement(join(AL445623.2:<177242..177431, FT AL445623.2:180745..180898,23731020..23731123, FT 23735235..23735563)) FT /gene="ELAVL2" FT /locus_tag="RP11-315I14.4-005" FT /product="ELAV (embryonic lethal, abnormal vision, FT Drosophila)-like 2 (Hu antigen B)" FT /note="match: ESTs: Em:BI464746.1" FT misc_feature 23760201 FT /note="Clone_right_end: RP11-31K16" FT CDS complement(join(AL445623.2:168384..168711, FT AL445623.2:169275..169313,AL445623.2:177206..177431, FT AL445623.2:180745..180898,23731020..23731123, FT 23762004..23762232)) FT /gene="ELAVL2" FT /locus_tag="RP11-315I14.4-001" FT /standard_name="OTTHUMP00000021157" FT /product="ELAV (embryonic lethal, abnormal vision, FT Drosophila)-like 2 (Hu antigen B)" FT /note="match: proteins: Sw:Q12926 Sw:Q12926 Sw:Q60899" FT /protein_id="CAC22160.1" FT /translation="METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNY FT LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR FT LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG FT ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP FT NRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVY FT NLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGY FT RLGDRVLQVSFKTNKTHKA" FT CDS complement(join(AL445623.2:168384..168711, FT AL445623.2:177206..177431,AL445623.2:180745..180898, FT 23731020..23731123,23762004..23762232)) FT /gene="ELAVL2" FT /locus_tag="RP11-315I14.4-002" FT /standard_name="OTTHUMP00000021158" FT /product="ELAV (embryonic lethal, abnormal vision, FT Drosophila)-like 2 (Hu antigen B)" FT /note="match: proteins: Sw:P70372 Sw:Q15717 Tr:Q90407 FT Tr:Q91584 Tr:Q91YP5 Tr:Q9PW24" FT /protein_id="CAI13376.1" FT /translation="METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNY FT LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR FT LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG FT ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP FT NRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQ FT MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT FT NKTHKA" FT CDS complement(join(AL445623.2:<177350..177431, FT AL445623.2:180745..180898,23731020..23731123, FT 23762004..23762232)) FT /gene="ELAVL2" FT /locus_tag="RP11-315I14.4-003" FT /standard_name="OTTHUMP00000021159" FT /product="ELAV (embryonic lethal, abnormal vision, FT Drosophila)-like 2 (Hu antigen B)" FT /protein_id="CAI13377.1" FT /translation="METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNY FT LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR FT LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG FT ISRGVGFIRFDKRIEAEEAIKGLNGQ" FT mRNA complement(join(AL445623.2:167854..168711, FT AL445623.2:169275..169313,AL445623.2:177206..177431, FT AL445623.2:180745..180898,23731020..23731123, FT 23762004..23762244,23765007..23765104)) FT /gene="ELAVL2" FT /locus_tag="RP11-315I14.4-004" FT /product="ELAV (embryonic lethal, abnormal vision, FT Drosophila)-like 2 (Hu antigen B)" FT /note="match: cDNAs: Em:U13706.1 Em:U17597.1 Em:X85111.1" FT /note="match: ESTs: Em:BB580442.1 Em:BI347676.1 FT Em:BI446609.1 Em:BM036000.1 Em:BQ385552.1" FT CDS complement(join(AL445623.2:168384..168711, FT AL445623.2:169275..169313,AL445623.2:177206..177431, FT AL445623.2:180745..180898,23731020..23731123, FT 23762004..23762244,23765007..23765078)) FT /gene="ELAVL2" FT /locus_tag="RP11-315I14.4-004" FT /standard_name="OTTHUMP00000021160" FT /product="ELAV (embryonic lethal, abnormal vision, FT Drosophila)-like 2 (Hu antigen B)" FT /note="match: proteins: Tr:Q91583 Tr:Q91903" FT /protein_id="CAI13378.1" FT /translation="MAVRLCDVASLLRSGSWAAEPWTGVIAAMETQLSNGPTCNNTANG FT PTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT FT GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT FT MTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA FT TEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFS FT PMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN FT TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA" FT mRNA complement(join(AL445623.2:<177350..177431, FT AL445623.2:180745..180898,23731020..23731123, FT 23762004..23762247,23779235..23779373)) FT /gene="ELAVL2" FT /locus_tag="RP11-315I14.4-003" FT /product="ELAV (embryonic lethal, abnormal vision, FT Drosophila)-like 2 (Hu antigen B)" FT /note="match: ESTs: Em:BI460617.1" FT mRNA complement(join(AL445623.2:165931..168711, FT AL445623.2:177206..177431,AL445623.2:180745..180898, FT 23731020..23731123,23762004..23762244,23821225..23821478)) FT /gene="ELAVL2" FT /locus_tag="RP11-315I14.4-002" FT /product="ELAV (embryonic lethal, abnormal vision, FT Drosophila)-like 2 (Hu antigen B)" FT /note="match: cDNAs: Em:BC030692.1" FT /note="match: ESTs: Em:AA545382.1 Em:AI018308.1 FT Em:AI217182.1 Em:AI376075.1 Em:AI990307.1 Em:AL041228.1 FT Em:AL041229.1 Em:AW183530.1 Em:BF439651.1 Em:BG069102.1 FT Em:BG723482.1 Em:BI458470.1 Em:BI547622.1 Em:BI917595.1 FT Em:BI985114.1 Em:BM553123.1 Em:BQ713631.1" FT mRNA complement(join(23765043..23765097,23825804..23826172)) FT /gene="ELAVL2" FT /locus_tag="RP11-315I14.4-006" FT /product="ELAV (embryonic lethal, abnormal vision, FT Drosophila)-like 2 (Hu antigen B)" FT /note="match: ESTs: Em:BE013870.1" FT mRNA complement(join(AL445623.2:167638..168711, FT AL445623.2:169275..169313,AL445623.2:177206..177431, FT AL445623.2:180745..180898,23731020..23731123, FT 23762004..23762244,23825804..23826335)) FT /gene="ELAVL2" FT /locus_tag="RP11-315I14.4-001" FT /product="ELAV (embryonic lethal, abnormal vision, FT Drosophila)-like 2 (Hu antigen B)" FT /note="match: cDNAs: Em:AY035380.1 Em:U12431.1 Em:U29088.1 FT Em:U29943.1" FT /note="match: ESTs: Em:AA081584.1 Em:AI323289.1 FT Em:BF285981.1 Em:BJ057542.1 Em:BJ076010.1 Em:BM719086.1 FT Em:BQ922000.1 Em:H33597.1" FT mRNA join(23829671..23830272,23831436..23831596, FT 23832182..23832313,AL365204.11:14128..14260, FT AL365204.11:16368..16766) FT /locus_tag="RP11-321L2.1-001" FT /product="novel transcript" FT /note="match: cDNAs: Em:AB060905.1" FT misc_feature 23833247..23962337 FT /note="annotated region of clone" FT mRNA complement(join(23894988..23895604,23897983..23898054)) FT /locus_tag="RP11-321L2.2-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BG700432.1" FT misc_feature 23909981..23909993 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 23962237 FT /note="Clone_right_end: RP11-321L2" FT mRNA join(AL161628.9:179908..180509,AL161628.9:181673..181833, FT AL161628.9:182419..182550,23847274..23847406, FT 23849514..23849912) FT /locus_tag="RP11-321L2.1-001" FT /product="novel transcript" FT /note="match: cDNAs: Em:AB060905.1" FT misc_feature 24098706 FT /note="Clone_left_end: RP11-33K8" FT misc_feature 24171761..24171768 FT /note="768 bases of IS1 transposon (M37616) removed here. FT This sequence represents the duplicated flanking sequence FT of the IS1" FT misc_feature 24216944 FT /note="Clone_left_end: RP11-114E4" FT misc_feature 24251453 FT /note="Clone_right_end: RP11-33K8" FT misc_feature 24384020 FT /note="Clone_right_end: RP11-114E4" FT misc_feature 24423071 FT /note="Clone_left_end: RP11-509A6" FT misc_feature 24493664 FT /note="Clone_left_end: RP11-20A20" FT misc_feature 24497664..24559904 FT /note="annotated region of clone" FT misc_feature 24531724..24531978 FT /note="Sequence from overlapping clone RP11-509A6 FT (AL441928). Assembly confirmed by restriction digest" FT CDS complement(join(24543227..24543365,24543662..24543752, FT 24544199..24544235)) FT /gene="C9orf134" FT /locus_tag="RP11-20A20.1-001" FT /standard_name="OTTHUMP00000021162" FT /product="chromosome 9 open reading frame 134" FT /note="match: proteins: Tr:Q9DAG1" FT /protein_id="CAH71315.1" FT /translation="MTNRCFKGEYCGDEDPRKAENREIALFLILLATAVILGSAVLLFH FT FCIFHRRKMKAIRRSLKEYVEKKLEELMGKIDEKEEKDFRLRK" FT mRNA complement(join(24542958..24543365,24543662..24543752, FT 24544199..24544279,24544741..24544758,24544970..24545059, FT 24545210..24545284,24545887..24545909)) FT /gene="C9orf134" FT /locus_tag="RP11-20A20.1-001" FT /product="chromosome 9 open reading frame 134" FT /note="match: ESTs: Em:AW435821.1 Em:BY706009.1" FT /note="match: cDNAs: Em:AK005867.1" FT misc_feature 24555905 FT /note="Clone_left_end: RP11-482I10" FT misc_feature 24633831 FT /note="Clone_right_end: RP11-20A20" FT misc_feature 24715899..24716058 FT /note="Tandem repeat. Unidirectional primer only region. FT Assembly confirmed by restriction enzyme digest data" FT misc_feature 24746555 FT /note="Clone_right_end: RP11-482I10" FT misc_feature 24756166..24756269 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 24780986 FT /note="Clone_left_end: RP11-332M12" FT misc_feature 24872681..24872690 FT /note="Single clone region. Imperfect tandem. Assembly FT confirmed by restriction enzyme digest data" FT misc_feature 24887785 FT /note="Clone_left_end: RP11-468C2" FT misc_feature 24949606 FT /note="Clone_right_end: RP11-332M12" FT misc_feature 24954788..24954802 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 25015486..25015489 FT /note="Tandem repeat. Single clone region. Sequence from FT uni-directional dGTP big dye terminator read only. Assembly FT confirmed by restriction digest data" FT misc_feature 25044557 FT /note="Clone_left_end: RP11-32I5" FT misc_feature 25077411 FT /note="Clone_right_end: RP11-468C2" FT misc_feature 25184227 FT /note="Clone_left_end: RP11-465H8" FT misc_feature 25233764 FT /note="Clone_right_end: RP11-32I5" FT misc_feature 25263372..25263437 FT /note="Sequence confirmed by AC015737 sequenced by WIBR" FT misc_feature 25263438..25263534 FT /note="Sequence from AC015737 sequenced by WIBR" FT misc_feature 25263535..25263587 FT /note="Sequence confirmed by AC015737 sequenced by WIBR" FT misc_feature 25300253 FT /note="Clone_left_end: RP11-330J23" FT misc_feature 25362135 FT /note="Clone_right_end: RP11-465H8" FT misc_feature 25406800 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 200bp by restriction digest data" FT misc_feature 25435687 FT /note="Clone_left_end: RP11-55P9" FT misc_feature 25474788 FT /note="Clone_right_end: RP11-330J23" FT misc_feature 25583496 FT /note="Clone_right_end: RP11-55P9" FT misc_feature 25698183 FT /note="Clone_left_end: RP11-33G16" FT misc_feature 25702183..25863240 FT /note="annotated region of clone" FT misc_feature 25763838 FT /note="Clone_left_end: RP11-202E10" FT mRNA join(25780054..25780166,25780414..25780615, FT 25784413..25784560) FT /locus_tag="RP11-33G16.1-001" FT /product="putative novel transcript" FT /note="match: ESTs: Em:BI829368.1" FT misc_feature 25781170..25781284 FT /note="Sequence from overlapping clone bA202E10 (AL391649) FT Assembly confirmed by restriction digest data" FT misc_feature 25861240 FT /note="Clone_right_end: RP11-33G16" FT misc_feature 25920270 FT /note="Clone_left_end: RP11-477G9" FT misc_feature 25945119 FT /note="Clone_right_end: RP11-202E10" FT misc_feature 26048873 FT /note="Clone_left_end: RP11-80I3" FT misc_feature 26099234 FT /note="Clone_right_end: RP11-477G9" FT misc_feature 26200393 FT /note="Clone_right_end: RP11-80I3" FT misc_feature 26244056 FT /note="Clone_left_end: RP11-351L5" FT misc_feature 26299732 FT /note="Clone_right_end: RP11-16P12" FT misc_feature 26330971..26331075 FT /note="Single clone region. Assembly confirmed by FT restriction digest data" FT misc_feature 26331076 FT /note="Tandem repeat. Forced join. Gap size estimated to be FT approximately 400bp by restriction digest data" FT misc_feature 26426330 FT /note="Clone_right_end: RP11-351L5" FT misc_feature complement(26362721..26565895) FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT repeat_region complement(26565421..26565472) FT /rpt_type=INVERTED FT /note="IR1, 82% complementary to IR1' (482..531)" FT repeat_region complement(26565365..26565414) FT /rpt_type=INVERTED FT /note="IR1', 82% complementary to IR1 (424..475)" FT exon 26564711..26564835 FT /note="GRAIL, score = 49%, comment = marginal" FT repeat_region 26563978..26564246 FT /rpt_family="ALU" FT /note="90% identity: matches 22..291 of consensus" FT repeat_region complement(26563969..26564241) FT /rpt_family="L1" FT /note="86% identity: matches 158..426 of consensus" FT exon complement(26563762..26563865) FT /note="MZEF prediction, score = 0.844" FT exon complement(26563763..26563772) FT /note="XPOUND prediction, score = 0.201" FT repeat_region complement(26563616..26563675) FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 76.7%, counts = 30" FT repeat_region complement(26563650..26563664) FT /note="GT repeat" FT repeat_region complement(26563616..26563627) FT /note="TG repeat" FT exon complement(26562987..26563014) FT /note="XPOUND prediction, score = 0.214" FT repeat_region 26561446..26561767 FT /rpt_family="THE" FT /note="87% identity: matches 24..342 of consensus" FT exon 26561471..26561512 FT /note="MZEF prediction, score = 0.526" FT exon complement(26560809..26560871) FT /note="XPOUND prediction, score = 0.508" FT exon complement(26560362..26560479) FT /note="GRAIL, score = 40%, comment = marginal shadow" FT repeat_region complement(26559395..26559407) FT /note="TTAT repeat" FT repeat_region complement(26559310..26559359) FT /rpt_family="atttt repeat" FT /rpt_type=TANDEM FT /note="homology = 76.0%, counts = 10" FT repeat_region 26558204..26559319 FT /rpt_family="L1" FT /note="88% identity: matches 330..1447 of consensus" FT exon 26559030..26559178 FT /note="GRAIL, score = 56%, comment = good" FT exon complement(26558874..26558969) FT /note="GRAIL, score = 47%, comment = marginal shadow" FT repeat_region complement(26558704..26558777) FT /rpt_type=INVERTED FT /note="IR2, 75% complementary to IR2' (9023..9096)" FT exon 26558232..26558346 FT /note="GRAIL, score = 83%, comment = excellent" FT repeat_region 26558132..26558182 FT /rpt_family="ALU" FT /note="98% identity: matches 234..284 of consensus" FT repeat_region complement(26558132..26558182) FT /rpt_family="L1" FT /note="94% identity: matches 161..211 of consensus" FT repeat_region complement(26557889..26558132) FT /rpt_family="L1" FT /note="83% identity: matches 183..424 of consensus" FT repeat_region 26557880..26558132 FT /rpt_family="ALU" FT /note="86% identity: matches 396..649 of consensus" FT repeat_region complement(26556800..26556873) FT /rpt_type=INVERTED FT /note="IR2', 75% complementary to IR2 (7119..7192)" FT repeat_region complement(26556644..26556717) FT /rpt_family="L1" FT /note="89% identity: matches 575..648 of consensus" FT repeat_region complement(26556487..26556575) FT /rpt_family="L1" FT /note="86% identity: matches 4..91 of consensus" FT exon complement(26554721..26554816) FT /note="XPOUND prediction, score = 0.369" FT exon 26554747..26554806 FT /note="MZEF prediction, score = 0.551" FT exon complement(26554721..26554803) FT /note="GRAIL, score = 65%, comment = good" FT repeat_region complement(26554081..26554096) FT /note="TA repeat" FT exon complement(26553852..26553879) FT /note="XPOUND prediction, score = 0.781" FT repeat_region 26553554..26553830 FT /rpt_family="L1" FT /note="86% identity: matches 250..526 of consensus" FT repeat_region complement(26553554..26553820) FT /rpt_family="ALU" FT /note="89% identity: matches 313..578 of consensus" FT repeat_region 26553466..26553517 FT /rpt_family="THE" FT /note="90% identity: matches 187..238 of consensus" FT exon complement(26552934..26553086) FT /note="MZEF prediction, score = 0.942" FT repeat_region complement(26553006..26553017) FT /note="GA repeat" FT exon 26552570..26552675 FT /note="GRAIL, score = 56%, comment = good" FT exon complement(26552526..26552671) FT /note="GRAIL, score = 86%, comment = excellent shadow" FT exon complement(26552526..26552634) FT /note="GENSCAN prediction, score = 5.44" FT exon complement(26552516..26552634) FT /note="XPOUND prediction, score = 0.890" FT exon 26551893..26552013 FT /note="GRAIL, score = 69%, comment = good" FT exon 26551550..26551647 FT /note="GRAIL, score = 64%, comment = good" FT exon complement(26550723..26550748) FT /note="XPOUND prediction, score = 0.590" FT repeat_region 26550192..26550445 FT /rpt_family="ALU" FT /note="88% identity: matches 158..411 of consensus" FT repeat_region complement(26550192..26550438) FT /rpt_family="L1" FT /note="83% identity: matches 268..516 of consensus" FT exon complement(26548651..26548714) FT /note="MZEF prediction, score = 0.656" FT repeat_region complement(26548624..26548636) FT /note="TC repeat" FT exon complement(26548492..26548506) FT /note="XPOUND prediction, score = 0.214" FT repeat_region complement(26548329..26548347) FT /note="TC repeat" FT repeat_region complement(26547915..26547927) FT /note="TTA repeat" FT repeat_region 26547797..26547922 FT /rpt_family="L1" FT /note="91% identity: matches 471..599 of consensus" FT exon 26547628..26547740 FT /note="GRAIL, score = 61%, comment = good" FT repeat_region 26547239..26547718 FT /rpt_family="L1" FT /note="92% identity: matches 941..1420 of consensus" FT exon complement(26547106..26547122) FT /note="XPOUND prediction, score = 0.312" FT repeat_region complement(26546707..26546744) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 84.2%, counts = 19" FT repeat_region complement(26546724..26546734) FT /note="AC repeat" FT repeat_region complement(26546623..26546688) FT /rpt_family="L1" FT /note="90% identity: matches 122..187 of consensus" FT exon complement(26545987..26546020) FT /note="XPOUND prediction, score = 0.391" FT repeat_region 26545761..26545904 FT /rpt_family="L1" FT /note="82% identity: matches 215..359 of consensus" FT exon complement(26545813..26545894) FT /note="MZEF prediction, score = 0.884" FT repeat_region 26545548..26545696 FT /rpt_family="L1" FT /note="86% identity: matches 1..150 of consensus" FT exon 26545552..26545683 FT /note="GRAIL, score = 65%, comment = good" FT repeat_region 26544859..26545584 FT /rpt_family="L1" FT /note="81% identity: matches 589..1309 of consensus" FT exon 26544850..26544951 FT /note="GRAIL, score = 49%, comment = marginal" FT repeat_region 26544652..26544814 FT /rpt_family="L1" FT /note="84% identity: matches 1446..1604 of consensus" FT repeat_region 26544432..26544589 FT /rpt_family="L1" FT /note="83% identity: matches 1226..1385 of consensus" FT repeat_region 26544217..26544410 FT /rpt_family="L1" FT /note="87% identity: matches 1010..1203 of consensus" FT repeat_region 26543615..26544178 FT /rpt_family="L1" FT /note="80% identity: matches 94..657 of consensus" FT exon 26543678..26543869 FT /note="GRAIL, score = 56%, comment = good" FT repeat_region 26543394..26543469 FT /rpt_family="L1" FT /note="89% identity: matches 137..212 of consensus" FT repeat_region 26543130..26543350 FT /rpt_family="L1" FT /note="80% identity: matches 3313..3529 of consensus" FT repeat_region complement(26543033..26543045) FT /note="TTCT repeat" FT repeat_region 26542881..26542936 FT /rpt_family="L1" FT /note="89% identity: matches 664..719 of consensus" FT repeat_region 26542523..26542806 FT /rpt_family="L1" FT /note="82% identity: matches 11..297 of consensus" FT repeat_region 26542120..26542476 FT /rpt_family="L1" FT /note="82% identity: matches 2080..2440 of consensus" FT repeat_region 26541885..26542094 FT /rpt_family="L1" FT /note="82% identity: matches 1841..2052 of consensus" FT repeat_region 26541263..26541813 FT /rpt_family="L1" FT /note="80% identity: matches 167..717 of consensus" FT exon complement(26541361..26541394) FT /note="XPOUND prediction, score = 0.287" FT exon 26540909..26541224 FT /note="GRAIL, score = 58%, comment = good" FT exon complement(26540254..26540301) FT /note="XPOUND prediction, score = 0.569" FT exon 26539960..26540035 FT /note="GRAIL, score = 52%, comment = good" FT exon complement(26539559..26539672) FT /note="GENSCAN prediction, score = 3.90" FT exon complement(26539339..26539351) FT /note="XPOUND prediction, score = 0.220" FT exon complement(26539280..26539292) FT /note="XPOUND prediction, score = 0.361" FT repeat_region complement(26538699..26538730) FT /note="ACAA repeat" FT repeat_region complement(26538691..26538730) FT /rpt_family="acaa repeat" FT /rpt_type=TANDEM FT /note="homology = 92.5%, counts = 10" FT exon complement(26538588..26538626) FT /note="XPOUND prediction, score = 0.453" FT repeat_region complement(26537810..26537869) FT /rpt_family="tattta repeat" FT /rpt_type=TANDEM FT /note="homology = 73.3%, counts = 10" FT exon complement(26537206..26537339) FT /note="GRAIL, score = 65%, comment = good" FT exon complement(26535324..26535428) FT /note="GRAIL, score = 40%, comment = marginal" FT repeat_region complement(26534880..26534891) FT /note="TA repeat" FT exon complement(26534263..26534306) FT /note="GRAIL, score = 58%, comment = good" FT /note="MZEF prediction, score = 0.537" FT /note="XPOUND prediction, score = 0.508" FT repeat_region 26533274..26533396 FT /rpt_family="L1" FT /note="86% identity: matches 8..130 of consensus" FT repeat_region 26533135..26533224 FT /rpt_family="L1" FT /note="87% identity: matches 238..326 of consensus" FT repeat_region 26532830..26532965 FT /rpt_family="L1" FT /note="83% identity: matches 1824..1958 of consensus" FT repeat_region 26532523..26532741 FT /rpt_family="L1" FT /note="82% identity: matches 531..750 of consensus" FT exon complement(26531864..26531880) FT /note="XPOUND prediction, score = 0.202" FT exon 26531002..26531055 FT /note="XPOUND prediction, score = 0.567" FT exon 26530957..26531001 FT /note="GRAIL, score = 65%, comment = good shadow" FT exon 26530957..26530992 FT /note="XPOUND prediction, score = 0.523" FT exon complement(26530321..26530348) FT /note="GRAIL, score = 50%, comment = good shadow" FT exon 26528458..26528567 FT /note="XPOUND prediction, score = 0.637" FT exon 26527111..26527125 FT /note="XPOUND prediction, score = 0.411" FT STS complement(26526503..26526778) FT /standard_name="SHGC-83636 (D11S4975), Map: 9, Homo FT sapiens" FT /note="GenBank Accession Number: G49784" FT exon complement(26525823..26525935) FT /note="GENSCAN prediction, score = 0.24" FT exon 26524444..26524486 FT /note="XPOUND prediction, score = 0.405" FT repeat_region complement(26524056..26524078) FT /note="TCAT repeat" FT repeat_region complement(26524051..26524078) FT /rpt_family="tcat repeat" FT /rpt_type=TANDEM FT /note="homology = 96.4%, counts = 7" FT exon 26523587..26523600 FT /note="XPOUND prediction, score = 0.222" FT repeat_region complement(26522680..26522699) FT /note="TTA repeat" FT repeat_region complement(26522065..26522408) FT /rpt_family="L1" FT /note="91% identity: matches 462..805 of consensus" FT exon complement(26521503..26521609) FT /note="MZEF prediction, score = 0.920" FT repeat_region complement(26520943..26521103) FT /rpt_family="L1" FT /note="84% identity: matches 2990..3155 of consensus" FT repeat_region complement(26520904..26520927) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 95.8%, counts = 12" FT repeat_region complement(26520903..26520923) FT /note="AT repeat" FT exon 26520014..26520128 FT /note="GRAIL, score = 70%, comment = good" FT exon complement(26520004..26520080) FT /note="GRAIL, score = 61%, comment = good shadow" FT exon 26519551..26519683 FT /note="GENSCAN prediction, score = 3.08" FT exon 26519557..26519587 FT /note="XPOUND prediction, score = 0.280" FT repeat_region complement(26519415..26519459) FT /rpt_family="tgagtgagctgctga repeat" FT /rpt_type=TANDEM FT /note="homology = 91.1%, counts = 3" FT exon 26516322..26516395 FT /note="MZEF prediction, score = 0.629" FT exon complement(26516269..26516296) FT /note="XPOUND prediction, score = 0.234" FT exon 26515982..26516031 FT /note="MZEF prediction, score = 0.906" FT repeat_region complement(26515423..26515470) FT /rpt_family="tttttctt repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 6" FT repeat_region complement(26515451..26515469) FT /note="TTTTC repeat" FT repeat_region complement(26515438..26515450) FT /note="TCTT repeat" FT repeat_region complement(26515146..26515410) FT /rpt_family="L1" FT /note="84% identity: matches 167..424 of consensus" FT repeat_region 26515132..26515410 FT /rpt_family="ALU" FT /note="89% identity: matches 856..1131 of consensus" FT exon complement(26514993..26515141) FT /note="GRAIL, score = 57%, comment = good" FT exon complement(26514475..26514545) FT /note="XPOUND prediction, score = 0.243" FT repeat_region complement(26513873..26513929) FT /rpt_family="ALU" FT /note="91% identity: matches 363..419 of consensus" FT repeat_region complement(26512961..26513242) FT /rpt_family="ALU" FT /note="97% identity: matches 1..281 of consensus" FT repeat_region 26512961..26513242 FT /rpt_family="L1" FT /note="90% identity: matches 245..526 of consensus" FT misc_feature complement(26512965..26513239) FT /note="CpG_island (%GC=62.2, o/e=0.89, #CpGs=24)" FT exon 26512824..26512903 FT /note="MZEF prediction, score = 0.860" FT exon 26512625..26512734 FT /note="MZEF prediction, score = 0.549" FT exon complement(26511834..26511882) FT /note="GRAIL, score = 50%, comment = good" FT repeat_region complement(26511508..26511547) FT /rpt_family="ca repeat" FT /rpt_type=TANDEM FT /note="homology = 77.5%, counts = 20" FT repeat_region 26511330..26511438 FT /rpt_family="MER7" FT /note="83% identity: matches 140..238 of consensus" FT repeat_region 26511228..26511328 FT /rpt_family="MER7" FT /note="83% identity: matches 66..164 of consensus" FT repeat_region complement(26511130..26511155) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 96.2%, counts = 13" FT repeat_region complement(26511130..26511150) FT /note="CA repeat" FT repeat_region complement(26511111..26511129) FT /note="TC repeat" FT exon 26510497..26510547 FT /note="MZEF prediction, score = 0.567" FT repeat_region complement(26510318..26510333) FT /note="AAC repeat" FT repeat_region complement(26508724..26508785) FT /rpt_family="MER1" FT /note="90% identity: matches 78..140 of consensus" FT repeat_region complement(26508616..26508754) FT /rpt_family="MER1" FT /note="84% identity: matches 260..399 of consensus" FT repeat_region complement(26508546..26508632) FT /rpt_family="MER1" FT /note="87% identity: matches 1..87 of consensus" FT exon 26507131..26507172 FT /note="GENSCAN prediction, score = 1.34" FT exon 26506457..26506517 FT /note="GENSCAN prediction, score = 3.67" FT exon complement(26505926..26505941) FT /note="XPOUND prediction, score = 0.234" FT repeat_region complement(26505411..26505454) FT /rpt_family="gt repeat" FT /rpt_type=TANDEM FT /note="homology = 77.3%, counts = 22" FT repeat_region complement(26505410..26505423) FT /note="TG repeat" FT repeat_region complement(26505324..26505396) FT /rpt_type=INVERTED FT /note="IR3, 79% complementary to IR3' (61097..61169)" FT exon 26505197..26505308 FT /note="GRAIL, score = 77%, comment = excellent" FT exon complement(26505164..26505206) FT /note="XPOUND prediction, score = 0.650" FT repeat_region complement(26504727..26504799) FT /rpt_type=INVERTED FT /note="IR3', 79% complementary to IR3 (60500..60572)" FT repeat_region complement(26504469..26504483) FT /note="TC repeat" FT repeat_region complement(26504459..26504483) FT /rpt_type=INVERTED FT /note="IR4, 96% complementary to IR4' (61500..61525)" FT repeat_region complement(26504398..26504425) FT /rpt_family="ac repeat" FT /rpt_type=TANDEM FT /note="homology = 96.4%, counts = 14" FT repeat_region complement(26504397..26504423) FT /note="AC repeat" FT repeat_region complement(26504385..26504396) FT /note="TA repeat" FT repeat_region complement(26504371..26504396) FT /rpt_type=INVERTED FT /note="IR4', 96% complementary to IR4 (61413..61437)" FT repeat_region complement(26504367..26504384) FT /note="GA repeat" FT exon complement(26502425..26502643) FT /note="GRAIL, score = 43%, comment = marginal" FT exon complement(26502425..26502546) FT /note="XPOUND prediction, score = 0.360" FT repeat_region complement(26502163..26502213) FT /rpt_family="gcaggaagaagtgatgt repeat" FT /rpt_type=TANDEM FT /note="homology = 96.1%, counts = 3" FT repeat_region complement(26501666..26501913) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 77.0%, counts = 124" FT repeat_region complement(26501862..26501904) FT /rpt_type=INVERTED FT /note="IR6, 90% complementary to IR6' (64043..64085)" FT repeat_region complement(26501889..26501902) FT /note="TG repeat" FT repeat_region complement(26501862..26501902) FT /rpt_type=INVERTED FT /note="IR5, 92% complementary to IR5' (64043..64083)" FT repeat_region complement(26501813..26501853) FT /rpt_type=INVERTED FT /note="IR5', 92% complementary to IR5 (63994..64034)" FT repeat_region complement(26501811..26501853) FT /rpt_type=INVERTED FT /note="IR6', 90% complementary to IR6 (63992..64034)" FT repeat_region complement(26501793..26501803) FT /note="AT repeat" FT repeat_region complement(26501664..26501725) FT /rpt_type=INVERTED FT /note="IR11, 75% complementary to IR11' (65967..66028)" FT repeat_region complement(26501664..26501722) FT /rpt_type=INVERTED FT /note="IR10, 77% complementary to IR10' (65967..66025)" FT repeat_region complement(26501664..26501720) FT /rpt_type=INVERTED FT /note="IR9, 80% complementary to IR9' (65967..66023)" FT repeat_region complement(26501664..26501718) FT /rpt_type=INVERTED FT /note="IR8, 81% complementary to IR8' (65967..66021)" FT repeat_region complement(26501664..26501716) FT /rpt_type=INVERTED FT /note="IR7, 83% complementary to IR7' (65967..66019)" FT exon complement(26500468..26500476) FT /note="XPOUND prediction, score = 0.319" FT repeat_region complement(26500303..26500315) FT /note="TAAT repeat" FT repeat_region complement(26499877..26499930) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 98.1%, counts = 27" FT repeat_region complement(26499900..26499929) FT /rpt_type=INVERTED FT /note="IR15, 86% complementary to IR15' (65999..66028)" FT repeat_region complement(26499877..26499929) FT /rpt_type=INVERTED FT /note="IR7', 83% complementary to IR7 (64180..64232)" FT repeat_region complement(26499875..26499929) FT /rpt_type=INVERTED FT /note="IR8', 81% complementary to IR8 (64178..64232)" FT repeat_region complement(26499873..26499929) FT /rpt_type=INVERTED FT /note="IR9', 80% complementary to IR9 (64176..64232)" FT repeat_region complement(26499871..26499929) FT /rpt_type=INVERTED FT /note="IR10', 77% complementary to IR10 (64174..64232)" FT repeat_region complement(26499868..26499929) FT /rpt_type=INVERTED FT /note="IR11', 75% complementary to IR11 (64171..64232)" FT repeat_region complement(26499877..26499927) FT /note="AT repeat" FT repeat_region complement(26499903..26499926) FT /rpt_type=INVERTED FT /note="IR12, 100% complementary to IR12' (65996..66019)" FT repeat_region complement(26499902..26499926) FT /rpt_type=INVERTED FT /note="IR13, 96% complementary to IR13' (65997..66021)" FT repeat_region complement(26499901..26499926) FT /rpt_type=INVERTED FT /note="IR14, 92% complementary to IR14' (65998..66023)" FT repeat_region complement(26499877..26499900) FT /rpt_type=INVERTED FT /note="IR12', 100% complementary to IR12 (65970..65993)" FT repeat_region complement(26499875..26499899) FT /rpt_type=INVERTED FT /note="IR13', 96% complementary to IR13 (65970..65994)" FT repeat_region complement(26499873..26499898) FT /rpt_type=INVERTED FT /note="IR14', 92% complementary to IR14 (65970..65995)" FT repeat_region complement(26499868..26499897) FT /rpt_type=INVERTED FT /note="IR15', 86% complementary to IR15 (65967..65996)" FT repeat_region 26499606..26499849 FT /rpt_family="ALU" FT /note="92% identity: matches 36..279 of consensus" FT repeat_region complement(26499606..26499849) FT /rpt_family="L1" FT /note="88% identity: matches 248..490 of consensus" FT repeat_region complement(26499459..26499553) FT /rpt_family="L1" FT /note="90% identity: matches 161..255 of consensus" FT repeat_region 26499453..26499553 FT /rpt_family="ALU" FT /note="93% identity: matches 327..426 of consensus" FT repeat_region 26498998..26499201 FT /rpt_family="L1" FT /note="80% identity: matches 1..201 of consensus" FT exon complement(26498868..26498883) FT /note="XPOUND prediction, score = 0.652" FT repeat_region 26498672..26498854 FT /rpt_family="L1" FT /note="84% identity: matches 121..306 of consensus" FT repeat_region 26498496..26498616 FT /rpt_family="L1" FT /note="84% identity: matches 195..316 of consensus" FT repeat_region 26498364..26498422 FT /rpt_family="L1" FT /note="89% identity: matches 72..130 of consensus" FT repeat_region 26497729..26498038 FT /rpt_family="L1" FT /note="84% identity: matches 1653..1962 of consensus" FT repeat_region 26497604..26497696 FT /rpt_family="L1" FT /note="86% identity: matches 25..120 of consensus" FT repeat_region 26497525..26497642 FT /rpt_family="L1" FT /note="89% identity: matches 1462..1578 of consensus" FT repeat_region 26497195..26497334 FT /rpt_family="L1" FT /note="84% identity: matches 145..284 of consensus" FT repeat_region complement(26497178..26497193) FT /note="TTCT repeat" FT repeat_region complement(26496849..26497008) FT /rpt_family="atatttttta repeat" FT /rpt_type=TANDEM FT /note="homology = 59.4%, counts = 16" FT repeat_region 26496686..26496743 FT /rpt_family="L1" FT /note="93% identity: matches 471..528 of consensus" FT repeat_region complement(26496678..26496692) FT /note="TTTC repeat" FT repeat_region 26496605..26496658 FT /rpt_family="L1" FT /note="90% identity: matches 568..621 of consensus" FT repeat_region complement(26493988..26494013) FT /note="TTA repeat" FT repeat_region complement(26493963..26494013) FT /rpt_family="tta repeat" FT /rpt_type=TANDEM FT /note="homology = 76.5%, counts = 17" FT exon 26493416..26493595 FT /note="GENSCAN prediction, score = 0.93" FT exon complement(26493491..26493518) FT /note="XPOUND prediction, score = 0.563" FT misc_feature complement(26492444..26493406) FT /note="CpG_island (%GC=72.0, o/e=0.61, #CpGs=67)" FT repeat_region complement(26493052..26493138) FT /rpt_family="ALU" FT /note="85% identity: matches 1..92 of consensus" FT repeat_region complement(26492861..26492953) FT /rpt_family="ALU" FT /note="90% identity: matches 1..93 of consensus" FT repeat_region complement(26492705..26492797) FT /rpt_family="ALU" FT /note="88% identity: matches 1..93 of consensus" FT repeat_region complement(26492589..26492681) FT /rpt_family="ALU" FT /note="91% identity: matches 1..93 of consensus" FT repeat_region complement(26492512..26492601) FT /rpt_family="ALU" FT /note="92% identity: matches 2..91 of consensus" FT exon 26492425..26492500 FT /note="GENSCAN prediction, score = 2.60" FT repeat_region complement(26492061..26492444) FT /rpt_family="ALU" FT /note="86% identity: matches 6..391 of consensus" FT repeat_region complement(26491967..26491979) FT /note="AAGA repeat" FT repeat_region complement(26491938..26491967) FT /rpt_family="agggag repeat" FT /rpt_type=TANDEM FT /note="homology = 93.3%, counts = 5" FT exon 26491771..26491855 FT /note="GRAIL, score = 66%, comment = good" FT repeat_region complement(26491384..26491397) FT /note="GAGGA repeat" FT exon 26490470..26490712 FT /note="XPOUND prediction, score = 0.370" FT repeat_region complement(26490326..26490380) FT /rpt_family="L1" FT /note="94% identity: matches 3..57 of consensus" FT repeat_region complement(26489320..26489866) FT /rpt_family="L1" FT /note="84% identity: matches 1215..1762 of consensus" FT repeat_region complement(26488955..26489174) FT /rpt_family="L1" FT /note="87% identity: matches 1..216 of consensus" FT repeat_region complement(26488684..26488856) FT /rpt_family="L1" FT /note="85% identity: matches 181..353 of consensus" FT repeat_region complement(26487977..26488168) FT /rpt_family="L1" FT /note="81% identity: matches 46..237 of consensus" FT repeat_region complement(26487635..26488025) FT /rpt_family="L1" FT /note="82% identity: matches 188..586 of consensus" FT repeat_region complement(26487390..26487532) FT /rpt_family="L1" FT /note="82% identity: matches 668..807 of consensus" FT repeat_region complement(26487174..26487247) FT /rpt_family="L1" FT /note="85% identity: matches 24..97 of consensus" FT repeat_region complement(26485627..26487038) FT /rpt_family="L1" FT /note="81% identity: matches 231..1642 of consensus" FT repeat_region complement(26485530..26485604) FT /rpt_family="ALU" FT /note="94% identity: matches 4..78 of consensus" FT repeat_region 26485530..26485604 FT /rpt_family="L1" FT /note="90% identity: matches 442..516 of consensus" FT repeat_region complement(26485340..26485489) FT /rpt_family="ALU" FT /note="90% identity: matches 95..243 of consensus" FT repeat_region 26485340..26485489 FT /rpt_family="L1" FT /note="86% identity: matches 245..393 of consensus" FT exon 26485368..26485402 FT /note="XPOUND prediction, score = 0.333" FT repeat_region complement(26485302..26485315) FT /note="AAT repeat" FT exon 26485231..26485255 FT /note="XPOUND prediction, score = 0.335" FT repeat_region complement(26485183..26485247) FT /rpt_family="L1" FT /note="93% identity: matches 702..766 of consensus" FT repeat_region complement(26484238..26485150) FT /rpt_family="L1" FT /note="83% identity: matches 1793..2708 of consensus" FT repeat_region complement(26485025..26485038) FT /note="AAATC repeat" FT exon 26484218..26484280 FT /note="XPOUND prediction, score = 0.383" FT repeat_region 26483998..26484217 FT /rpt_family="L1" FT /note="85% identity: matches 302..526 of consensus" FT repeat_region complement(26483992..26484217) FT /rpt_family="ALU" FT /note="89% identity: matches 1..231 of consensus" FT repeat_region complement(26483992..26484216) FT /rpt_type=INVERTED FT /note="IR16, 80% complementary to IR16' (83121..83349)" FT repeat_region complement(26483952..26483990) FT /rpt_family="ALU" FT /note="100% identity: matches 229..267 of consensus" FT repeat_region 26483952..26483988 FT /rpt_family="L1" FT /note="97% identity: matches 245..281 of consensus" FT repeat_region complement(26483924..26483947) FT /note="AAAAG repeat" FT repeat_region complement(26483692..26483917) FT /rpt_family="L1" FT /note="85% identity: matches 2705..2927 of consensus" FT repeat_region complement(26483476..26483615) FT /rpt_family="L1" FT /note="85% identity: matches 2991..3136 of consensus" FT exon complement(26483299..26483311) FT /note="XPOUND prediction, score = 0.476" FT repeat_region 26482555..26482822 FT /rpt_family="ALU" FT /note="91% identity: matches 405..670 of consensus" FT repeat_region complement(26482562..26482805) FT /rpt_family="L1" FT /note="83% identity: matches 182..422 of consensus" FT repeat_region complement(26482547..26482775) FT /rpt_type=INVERTED FT /note="IR16', 80% complementary to IR16 (81680..81904)" FT exon 26481947..26482551 FT /note="GENSCAN prediction, score = 6.07" FT repeat_region 26480861..26482506 FT /rpt_family="L1" FT /note="92% identity: matches 2912..4562 of consensus" FT exon 26481947..26482134 FT /note="GRAIL, score = 49%, comment = marginal" FT exon complement(26481509..26481636) FT /note="GRAIL, score = 80%, comment = excellent shadow" FT exon 26481540..26481623 FT /note="GRAIL, score = 50%, comment = good" FT exon 26481155..26481386 FT /note="GENSCAN prediction, score = 2.31" FT repeat_region complement(26479839..26480858) FT /rpt_family="L1" FT /note="91% identity: matches 210..1230 of consensus" FT exon complement(26480763..26480830) FT /note="XPOUND prediction, score = 0.446" FT repeat_region complement(26479592..26479828) FT /rpt_family="L1" FT /note="90% identity: matches 776..1013 of consensus" FT exon complement(26479744..26479781) FT /note="XPOUND prediction, score = 0.552" FT repeat_region complement(26479458..26479587) FT /rpt_family="L1" FT /note="94% identity: matches 717..846 of consensus" FT repeat_region complement(26479439..26479457) FT /note="ATA repeat" FT repeat_region complement(26478410..26478589) FT /rpt_family="tttttttttg repeat" FT /rpt_type=TANDEM FT /note="homology = 60.6%, counts = 18" FT repeat_region complement(26478552..26478582) FT /rpt_type=INVERTED FT /note="IR17, 80% complementary to IR17' (88920..88950)" FT exon 26478110..26478221 FT /note="GRAIL, score = 83%, comment = excellent" FT exon 26478110..26478183 FT /note="GENSCAN prediction, score = 3.93" FT exon 26478110..26478147 FT /note="MZEF prediction, score = 0.599" FT exon complement(26478052..26478122) FT /note="GRAIL, score = 54%, comment = good shadow" FT repeat_region complement(26477958..26478105) FT /rpt_family="ag repeat" FT /rpt_type=TANDEM FT /note="homology = 62.8%, counts = 74" FT repeat_region complement(26477991..26478019) FT /note="AG repeat" FT exon complement(26477353..26477492) FT /note="MZEF prediction, score = 0.538" FT repeat_region complement(26476946..26476976) FT /rpt_type=INVERTED FT /note="IR17', 80% complementary to IR17 (87314..87344)" FT exon 26475774..26475882 FT /note="GRAIL, score = 56%, comment = good" FT repeat_region complement(26474229..26474326) FT /rpt_family="agaagat repeat" FT /rpt_type=TANDEM FT /note="homology = 66.3%, counts = 14" FT exon complement(26471281..26471451) FT /note="MZEF prediction, score = 0.611" FT repeat_region complement(26469486..26469547) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 69.4%, counts = 31" FT exon 26469233..26469246 FT /note="GENSCAN prediction, score = 2.02" FT repeat_region complement(26469009..26469027) FT /note="AC repeat" FT exon 26468407..26468532 FT /note="MZEF prediction, score = 0.595" FT exon 26468047..26468125 FT /note="MZEF prediction, score = 0.664" FT exon complement(26466881..26466905) FT /note="XPOUND prediction, score = 0.773" FT repeat_region 26466126..26466321 FT /rpt_family="ALU" FT /note="91% identity: matches 229..424 of consensus" FT repeat_region complement(26466132..26466318) FT /rpt_family="L1" FT /note="87% identity: matches 166..353 of consensus" FT repeat_region complement(26466127..26466288) FT /rpt_type=INVERTED FT /note="IR18, 83% complementary to IR18' (99959..100120)" FT repeat_region 26466056..26466111 FT /rpt_family="ALU" FT /note="100% identity: matches 413..468 of consensus" FT repeat_region complement(26466056..26466107) FT /rpt_family="L1" FT /note="94% identity: matches 474..526 of consensus" FT repeat_region complement(26465775..26466021) FT /rpt_family="ALU" FT /note="87% identity: matches 1..245 of consensus" FT repeat_region 26465786..26466007 FT /rpt_family="L1" FT /note="82% identity: matches 207..424 of consensus" FT repeat_region complement(26465776..26465937) FT /rpt_type=INVERTED FT /note="IR18', 83% complementary to IR18 (99608..99769)" FT repeat_region complement(26465497..26465666) FT /rpt_family="THE" FT /note="83% identity: matches 5..178 of consensus" FT repeat_region complement(26465335..26465566) FT /rpt_family="THE" FT /note="88% identity: matches 8..243 of consensus" FT repeat_region complement(26465249..26465263) FT /note="TTTA repeat" FT exon complement(26462593..26462686) FT /note="GRAIL, score = 55%, comment = good" FT repeat_region complement(26462456..26462510) FT /rpt_family="ttcaa repeat" FT /rpt_type=TANDEM FT /note="homology = 81.8%, counts = 11" FT repeat_region complement(26462462..26462478) FT /note="CAGTT repeat" FT repeat_region complement(26462272..26462282) FT /note="TC repeat" FT repeat_region complement(26461989..26462000) FT /note="TTG repeat" FT exon complement(26461763..26461838) FT /note="GRAIL, score = 49%, comment = marginal" FT exon complement(26460577..26460643) FT /note="XPOUND prediction, score = 0.648" FT exon 26460070..26460219 FT /note="GRAIL, score = 53%, comment = good shadow" FT exon complement(26460006..26460194) FT /note="GRAIL, score = 63%, comment = good" FT exon complement(26460088..26460172) FT /note="XPOUND prediction, score = 0.237" FT exon complement(26460081..26460085) FT /note="XPOUND prediction, score = 0.203" FT repeat_region complement(26459845..26459924) FT /rpt_family="cttt repeat" FT /rpt_type=TANDEM FT /note="homology = 65.0%, counts = 20" FT exon complement(26459442..26459560) FT /note="GRAIL, score = 56%, comment = good" FT exon complement(26459311..26459366) FT /note="XPOUND prediction, score = 0.700" FT exon 26458661..26458737 FT /note="MZEF prediction, score = 0.787" FT exon complement(26458510..26458623) FT /note="MZEF prediction, score = 0.860" FT exon complement(26458079..26458201) FT /note="GRAIL, score = 54%, comment = good" FT repeat_region complement(26458179..26458192) FT /note="ATC repeat" FT exon complement(26457139..26457225) FT /note="GRAIL, score = 80%, comment = excellent" FT exon complement(26456289..26456387) FT /note="GRAIL, score = 81%, comment = excellent" FT repeat_region 26454730..26454919 FT /rpt_family="ALU" FT /note="81% identity: matches 69..258 of consensus" FT exon 26454506..26454581 FT /note="MZEF prediction, score = 0.622" FT exon 26452702..26452869 FT /note="GRAIL, score = 70%, comment = good" FT exon complement(26452481..26452586) FT /note="XPOUND prediction, score = 0.324" FT repeat_region complement(26452236..26452332) FT /rpt_family="L1" FT /note="87% identity: matches 1664..1760 of consensus" FT repeat_region complement(26451211..26451805) FT /rpt_type=INVERTED FT /note="IR19, 75% complementary to IR19' (115377..115975)" FT repeat_region complement(26451743..26451804) FT /rpt_family="L1" FT /note="88% identity: matches 1413..1474 of consensus" FT exon 26451610..26451704 FT /note="GRAIL, score = 63%, comment = good" FT repeat_region complement(26451427..26451601) FT /rpt_family="L1" FT /note="79% identity: matches 174..348 of consensus" FT repeat_region complement(26451300..26451372) FT /rpt_family="L1" FT /note="91% identity: matches 2665..2737 of consensus" FT repeat_region complement(26451212..26451265) FT /rpt_family="L1" FT /note="90% identity: matches 1269..1322 of consensus" FT exon 26451134..26451191 FT /note="GRAIL, score = 95%, comment = excellent" FT exon complement(26450953..26450994) FT /note="GRAIL, score = 86%, comment = excellent shadow" FT exon 26450647..26450659 FT /note="XPOUND prediction, score = 0.403" FT exon complement(26450590..26450623) FT /note="XPOUND prediction, score = 0.265" FT repeat_region 26450370..26450519 FT /rpt_family="L1" FT /note="84% identity: matches 165..313 of consensus" FT repeat_region complement(26449921..26450519) FT /rpt_type=INVERTED FT /note="IR19', 75% complementary to IR19 (114091..114685)" FT repeat_region 26450258..26450344 FT /rpt_family="L1" FT /note="86% identity: matches 1791..1877 of consensus" FT repeat_region 26449892..26450159 FT /rpt_family="L1" FT /note="82% identity: matches 1..267 of consensus" FT exon 26449949..26449994 FT /note="MZEF prediction, score = 0.672" FT repeat_region complement(26449681..26449932) FT /rpt_family="attt repeat" FT /rpt_type=TANDEM FT /note="homology = 56.3%, counts = 63" FT repeat_region complement(26449685..26449697) FT /note="TTA repeat" FT repeat_region 26449562..26449672 FT /rpt_family="L1" FT /note="97% identity: matches 211..322 of consensus" FT repeat_region 26445521..26449538 FT /rpt_family="L1" FT /note="96% identity: matches 1821..5844 of consensus" FT exon complement(26448612..26448646) FT /note="MZEF prediction, score = 0.618" FT exon 26448104..26448562 FT /note="GRAIL, score = 67%, comment = good" FT exon 26447673..26448055 FT /note="GRAIL, score = 69%, comment = good" FT exon 26446457..26447638 FT /note="GENSCAN prediction, score = 43.70" FT /note="GRAIL, score = 71%, comment = good" FT exon complement(26447256..26447363) FT /note="GRAIL, score = 54%, comment = good shadow" FT exon 26446347..26446444 FT /note="MZEF prediction, score = 0.675" FT exon 26445205..26445269 FT /note="MZEF prediction, score = 0.798" FT repeat_region complement(26445194..26445242) FT /rpt_family="THE" FT /note="93% identity: matches 1..49 of consensus" FT repeat_region complement(26445106..26445154) FT /rpt_family="THE" FT /note="91% identity: matches 84..132 of consensus" FT repeat_region complement(26444907..26445104) FT /rpt_family="THE" FT /note="87% identity: matches 161..358 of consensus" FT exon 26444355..26444415 FT /note="GRAIL, score = 48%, comment = marginal" FT exon complement(26444171..26444201) FT /note="XPOUND prediction, score = 0.445" FT repeat_region complement(26442651..26442766) FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 60.3%, counts = 58" FT repeat_region complement(26442742..26442752) FT /note="TC repeat" FT repeat_region complement(26442701..26442740) FT /rpt_type=INVERTED FT /note="IR20, 80% complementary to IR20' (124929..124968)" FT repeat_region complement(26442701..26442715) FT /note="ATTTT repeat" FT repeat_region complement(26442654..26442665) FT /note="AT repeat" FT repeat_region complement(26442192..26442205) FT /note="TATTC repeat" FT repeat_region complement(26440928..26440967) FT /rpt_type=INVERTED FT /note="IR20', 80% complementary to IR20 (123156..123195)" FT repeat_region complement(26440922..26440946) FT /note="AT repeat" FT repeat_region complement(26440909..26440946) FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 84.2%, counts = 19" FT repeat_region complement(26440776..26440810) FT /rpt_type=INVERTED FT /note="IR21, 88% complementary to IR21' (125137..125171)" FT repeat_region complement(26440725..26440759) FT /rpt_type=INVERTED FT /note="IR21', 88% complementary to IR21 (125086..125120)" FT exon 26440435..26440535 FT /note="GRAIL, score = 49%, comment = marginal" FT exon complement(26440185..26440248) FT /note="XPOUND prediction, score = 0.454" FT repeat_region complement(26439539..26439552) FT /note="GAGAT repeat" FT exon complement(26438350..26438397) FT /note="MZEF prediction, score = 0.811" FT repeat_region complement(26437868..26437903) FT /rpt_family="ttat repeat" FT /rpt_type=TANDEM FT /note="homology = 83.3%, counts = 9" FT exon complement(26437275..26437442) FT /note="MZEF prediction, score = 0.588" FT exon complement(26436862..26436881) FT /note="XPOUND prediction, score = 0.316" FT exon complement(26436818..26436834) FT /note="XPOUND prediction, score = 0.235" FT exon complement(26434931..26435074) FT /note="GRAIL, score = 82%, comment = excellent shadow" FT exon 26435021..26435067 FT /note="XPOUND prediction, score = 0.542" FT exon complement(26434865..26434879) FT /note="XPOUND prediction, score = 0.223" FT exon 26434423..26434585 FT /note="GRAIL, score = 68%, comment = good" FT repeat_region complement(26434537..26434552) FT /note="TAT repeat" FT exon complement(26434416..26434524) FT /note="GRAIL, score = 87%, comment = excellent shadow" FT exon 26434402..26434518 FT /note="GENSCAN prediction, score = 3.86" FT repeat_region complement(26434340..26434353) FT /note="AC repeat" FT repeat_region complement(26433780..26433858) FT /rpt_family="THE" FT /note="84% identity: matches 35..113 of consensus" FT exon 26433627..26433710 FT /note="GRAIL, score = 100%, comment = excellent" FT exon complement(26433079..26433100) FT /note="XPOUND prediction, score = 0.225" FT exon 26432892..26433026 FT /note="MZEF prediction, score = 0.629" FT repeat_region 26432516..26432843 FT /rpt_family="L1" FT /note="82% identity: matches 766..1098 of consensus" FT repeat_region complement(26432455..26432502) FT /rpt_family="tatatc repeat" FT /rpt_type=TANDEM FT /note="homology = 79.2%, counts = 8" FT repeat_region 26432186..26432438 FT /rpt_family="L1" FT /note="91% identity: matches 466..718 of consensus" FT exon 26432083..26432184 FT /note="GRAIL, score = 47%, comment = marginal" FT repeat_region 26432087..26432162 FT /rpt_family="L1" FT /note="92% identity: matches 3647..3722 of consensus" FT repeat_region 26432031..26432124 FT /rpt_family="L1" FT /note="84% identity: matches 61..152 of consensus" FT repeat_region 26431137..26431995 FT /rpt_family="L1" FT /note="85% identity: matches 2697..3553 of consensus" FT exon 26431136..26431429 FT /note="GRAIL, score = 42%, comment = marginal" FT repeat_region 26430907..26431076 FT /rpt_family="L1" FT /note="90% identity: matches 1333..1503 of consensus" FT repeat_region 26430594..26430839 FT /rpt_family="L1" FT /note="86% identity: matches 2128..2377 of consensus" FT exon 26430598..26430756 FT /note="GRAIL, score = 41%, comment = marginal" FT repeat_region 26430406..26430545 FT /rpt_family="L1" FT /note="89% identity: matches 813..952 of consensus" FT repeat_region 26430227..26430374 FT /rpt_family="L1" FT /note="85% identity: matches 17..165 of consensus" FT repeat_region 26429447..26430196 FT /rpt_family="L1" FT /note="83% identity: matches 1072..1813 of consensus" FT repeat_region complement(26429785..26429905) FT /rpt_family="gtttttttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 63.6%, counts = 11" FT exon 26429421..26429785 FT /note="GRAIL, score = 68%, comment = good" FT repeat_region 26428702..26429208 FT /rpt_family="L1" FT /note="85% identity: matches 48..545 of consensus" FT repeat_region 26428385..26428477 FT /rpt_family="L1" FT /note="88% identity: matches 27..121 of consensus" FT exon complement(26428442..26428470) FT /note="GRAIL, score = 59%, comment = good shadow" FT exon 26428140..26428406 FT /note="GENSCAN prediction, score = 0.61" FT misc_feature 26526496..26691794 FT /note="assembly_fragment~clone_end:T7~vector_side:left" FT /note="assembly_fragment~clone_end:SP6~vector_side:right" FT repeat_region 26569575..26569611 FT /rpt_family="ALU" FT /note="97% identity: matches 49..85 of consensus" FT repeat_region 26569633..26569674 FT /rpt_family="ALU" FT /note="92% identity: matches 673..714 of consensus" FT repeat_region 26569676..26569723 FT /rpt_family="aattaa repeat" FT /rpt_type=TANDEM FT /note="homology = 79.2%, counts = 8" FT exon complement(26570169..26570214) FT /note="MZEF prediction, score = 0.690" FT exon complement(26570307..26570451) FT /note="GRAIL, score = 88%, comment = excellent" FT exon complement(26570812..26570840) FT /note="XPOUND prediction, score = 0.628" FT exon complement(26571363..26571392) FT /note="XPOUND prediction, score = 0.301" FT exon complement(26571450..26571461) FT /note="GENSCAN prediction, score = 2.66" FT exon complement(26572006..26572240) FT /note="GRAIL, score = 68%, comment = good" FT exon complement(26572630..26572723) FT /note="XPOUND prediction, score = 0.493" FT exon complement(26572630..26572749) FT /note="GRAIL, score = 56%, comment = good" FT exon 26573305..26573358 FT /note="MZEF prediction, score = 0.536" FT exon 26573451..26573511 FT /note="MZEF prediction, score = 0.514" FT repeat_region 26574122..26574143 FT /rpt_type=INVERTED FT /note="IR3, 90% complementary to IR3' (48282..48303)" FT repeat_region 26574777..26574798 FT /rpt_type=INVERTED FT /note="IR3', 90% complementary to IR3 (47627..47648)" FT repeat_region 26575101..26575152 FT /rpt_family="acat repeat" FT /rpt_type=TANDEM FT /note="homology = 92.3%, counts = 13" FT repeat_region 26575113..26575152 FT /note="ACAT repeat" FT exon 26575397..26575498 FT /note="GRAIL, score = 58%, comment = good" FT exon complement(26576549..26576577) FT /note="XPOUND prediction, score = 0.721" FT repeat_region complement(26576684..26576765) FT /rpt_family="THE" FT /note="89% identity: matches 143..224 of consensus" FT exon 26576733..26576772 FT /note="GRAIL, score = 53%, comment = good" FT exon 26576821..26577027 FT /note="GRAIL, score = 45%, comment = marginal" FT repeat_region 26579198..26579230 FT /rpt_type=INVERTED FT /note="IR4, 87% complementary to IR4' (52746..52778)" FT repeat_region 26579241..26579273 FT /rpt_type=INVERTED FT /note="IR4', 87% complementary to IR4 (52703..52735)" FT repeat_region 26579529..26579553 FT /rpt_type=INVERTED FT /note="IR5, 92% complementary to IR5' (53541..53565)" FT repeat_region 26579529..26579561 FT /rpt_family="aca repeat" FT /rpt_type=TANDEM FT /note="homology = 84.8%, counts = 11" FT repeat_region 26579537..26579553 FT /note="AAC repeat" FT repeat_region complement(26579974..26580022) FT /rpt_family="ALU" FT /note="91% identity: matches 135..183 of consensus" FT repeat_region 26580034..26580060 FT /rpt_family="tgt repeat" FT /rpt_type=TANDEM FT /note="homology = 92.6%, counts = 9" FT repeat_region 26580034..26580061 FT /note="TGT repeat" FT repeat_region 26580036..26580060 FT /rpt_type=INVERTED FT /note="IR5', 92% complementary to IR5 (53034..53058)" FT repeat_region 26580264..26580465 FT /rpt_family="L1" FT /note="84% identity: matches 1812..2012 of consensus" FT repeat_region 26580670..26580684 FT /note="AAAT repeat" FT repeat_region 26580670..26580717 FT /rpt_family="aaat repeat" FT /rpt_type=TANDEM FT /note="homology = 75.0%, counts = 12" FT repeat_region 26580731..26580800 FT /rpt_family="L1" FT /note="85% identity: matches 109..178 of consensus" FT exon 26580849..26580883 FT /note="GRAIL, score = 65%, comment = good" FT repeat_region 26580888..26581040 FT /rpt_family="L1" FT /note="81% identity: matches 167..320 of consensus" FT repeat_region 26581075..26581288 FT /rpt_family="L1" FT /note="86% identity: matches 1111..1324 of consensus" FT exon complement(26582578..26582621) FT /note="XPOUND prediction, score = 0.234" FT exon complement(26583265..26583401) FT /note="GRAIL, score = 67%, comment = good" FT exon 26583911..26583932 FT /note="XPOUND prediction, score = 0.543" FT repeat_region 26584188..26584201 FT /note="CATA repeat" FT repeat_region 26584883..26584930 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 79.2%, counts = 24" FT repeat_region complement(26585166..26585233) FT /rpt_family="L1" FT /note="88% identity: matches 196..263 of consensus" FT repeat_region complement(26585259..26585337) FT /rpt_family="L1" FT /note="87% identity: matches 132..210 of consensus" FT repeat_region complement(26585406..26585472) FT /rpt_family="L1" FT /note="88% identity: matches 250..316 of consensus" FT exon 26585750..26585833 FT /note="GRAIL, score = 86%, comment = excellent" FT exon 26585771..26585787 FT /note="XPOUND prediction, score = 0.282" FT repeat_region complement(26585857..26586026) FT /rpt_family="L1" FT /note="84% identity: matches 599..767 of consensus" FT repeat_region complement(26586074..26586151) FT /rpt_family="L1" FT /note="87% identity: matches 1467..1544 of consensus" FT repeat_region complement(26586207..26586273) FT /rpt_family="L1" FT /note="86% identity: matches 1087..1153 of consensus" FT repeat_region 26586378..26588500 FT /rpt_family="L1" FT /note="97% identity: matches 1989..4111 of consensus" FT repeat_region 26586940..26586953 FT /note="CACCA repeat" FT exon 26587638..26588003 FT /note="GENSCAN prediction, score = 7.94" FT /note="GRAIL, score = 42%, comment = marginal" FT STS 26587649..26587862 FT /standard_name="WIAF-4218-STS (D11S4975), Map: 72.40, Homo FT sapiens" FT /note="GenBank Accession Number: G44370" FT exon complement(26587772..26587829) FT /note="XPOUND prediction, score = 0.336" FT exon complement(26587948..26588055) FT /note="GRAIL, score = 74%, comment = good shadow" FT exon 26588061..26588519 FT /note="GRAIL, score = 65%, comment = good" FT repeat_region complement(26588653..26588731) FT /rpt_family="L1" FT /note="91% identity: matches 21..99 of consensus" FT exon complement(26588683..26588687) FT /note="XPOUND prediction, score = 0.202" FT repeat_region complement(26588754..26588974) FT /rpt_family="L1" FT /note="92% identity: matches 635..852 of consensus" FT exon complement(26588793..26588900) FT /note="GRAIL, score = 67%, comment = good shadow" FT exon complement(26588865..26588876) FT /note="XPOUND prediction, score = 0.201" FT repeat_region complement(26589143..26589243) FT /rpt_family="L1" FT /note="85% identity: matches 632..732 of consensus" FT repeat_region complement(26589326..26589395) FT /rpt_family="L1" FT /note="88% identity: matches 3637..3706 of consensus" FT repeat_region complement(26589584..26589682) FT /rpt_family="THE" FT /note="85% identity: matches 236..334 of consensus" FT repeat_region complement(26589743..26589931) FT /rpt_family="THE" FT /note="87% identity: matches 9..199 of consensus" FT repeat_region complement(26589967..26590360) FT /rpt_family="THR" FT /note="87% identity: matches 744..1136 of consensus" FT repeat_region complement(26590486..26591362) FT /rpt_family="THR" FT /note="83% identity: matches 97..973 of consensus" FT exon complement(26590687..26590781) FT /note="XPOUND prediction, score = 0.573" FT exon complement(26591173..26591338) FT /note="XPOUND prediction, score = 0.732" FT exon complement(26591203..26591338) FT /note="GRAIL, score = 91%, comment = excellent" FT exon complement(26591203..26591361) FT /note="MZEF prediction, score = 0.879" FT exon complement(26591302..26591406) FT /note="GENSCAN prediction, score = 4.93" FT repeat_region complement(26591388..26591559) FT /rpt_family="THE" FT /note="87% identity: matches 176..346 of consensus" FT exon complement(26591624..26591842) FT /note="GENSCAN prediction, score = 7.28" FT repeat_region complement(26591652..26591726) FT /rpt_family="L1" FT /note="85% identity: matches 2238..2312 of consensus" FT repeat_region complement(26591727..26591823) FT /rpt_family="THR" FT /note="88% identity: matches 1..97 of consensus" FT exon complement(26591758..26591877) FT /note="GRAIL, score = 71%, comment = good" FT repeat_region complement(26591901..26591989) FT /rpt_family="THE" FT /note="89% identity: matches 207..295 of consensus" FT exon 26591946..26591955 FT /note="XPOUND prediction, score = 0.879" FT repeat_region complement(26591991..26592188) FT /rpt_family="THE" FT /note="88% identity: matches 1..199 of consensus" FT repeat_region complement(26592188..26592225) FT /rpt_family="ALU" FT /note="97% identity: matches 322..359 of consensus" FT repeat_region complement(26592260..26592298) FT /rpt_family="ALU" FT /note="97% identity: matches 1..39 of consensus" FT exon complement(26592387..26592613) FT /note="GRAIL, score = 57%, comment = good" FT repeat_region complement(26592487..26592533) FT /rpt_family="L1" FT /note="91% identity: matches 479..525 of consensus" FT exon complement(26592849..26592986) FT /note="GRAIL, score = 53%, comment = good" FT repeat_region 26592869..26593172 FT /rpt_family="attttttt repeat" FT /rpt_type=TANDEM FT /note="homology = 55.3%, counts = 38" FT repeat_region 26593190..26593450 FT /rpt_family="L1" FT /note="82% identity: matches 324..587 of consensus" FT repeat_region complement(26593200..26593455) FT /rpt_family="ALU" FT /note="85% identity: matches 461..715 of consensus" FT repeat_region 26594167..26594223 FT /rpt_family="cttttttttcttttctttt repeat" FT /rpt_type=TANDEM FT /note="homology = 87.7%, counts = 3" FT repeat_region 26594173..26594209 FT /note="TTTCT repeat" FT repeat_region complement(26594242..26594348) FT /rpt_family="ALU" FT /note="88% identity: matches 459..560 of consensus" FT repeat_region 26594246..26594378 FT /rpt_family="L1" FT /note="83% identity: matches 182..309 of consensus" FT repeat_region complement(26594395..26594513) FT /rpt_family="ALU" FT /note="89% identity: matches 466..584 of consensus" FT repeat_region 26594395..26594517 FT /rpt_family="L1" FT /note="86% identity: matches 469..591 of consensus" FT repeat_region 26594528..26594563 FT /rpt_family="gtt repeat" FT /rpt_type=TANDEM FT /note="homology = 86.1%, counts = 12" FT repeat_region 26594538..26594557 FT /note="TTG repeat" FT repeat_region complement(26594569..26594781) FT /rpt_family="ALU" FT /note="93% identity: matches 66..279 of consensus" FT repeat_region 26594572..26594781 FT /rpt_family="L1" FT /note="89% identity: matches 251..461 of consensus" FT repeat_region 26595029..26595109 FT /rpt_family="attattttt repeat" FT /rpt_type=TANDEM FT /note="homology = 67.9%, counts = 9" FT exon 26595256..26595288 FT /note="XPOUND prediction, score = 0.361" FT exon complement(26595802..26595834) FT /note="XPOUND prediction, score = 0.373" FT repeat_region complement(26596564..26596836) FT /rpt_family="ALU" FT /note="94% identity: matches 308..580 of consensus" FT repeat_region 26596564..26596836 FT /rpt_family="L1" FT /note="89% identity: matches 248..521 of consensus" FT exon complement(26596743..26596807) FT /note="XPOUND prediction, score = 0.402" FT repeat_region 26597455..26597482 FT /rpt_family="aatg repeat" FT /rpt_type=TANDEM FT /note="homology = 100.0%, counts = 7" FT repeat_region 26597455..26597483 FT /note="AATG repeat" FT exon complement(26598614..26598657) FT /note="XPOUND prediction, score = 0.358" FT exon complement(26598614..26598679) FT /note="GRAIL, score = 86%, comment = excellent" FT /note="MZEF prediction, score = 0.605" FT repeat_region 26598828..26598944 FT /rpt_family="ataaaaaagagaa repeat" FT /rpt_type=TANDEM FT /note="homology = 64.1%, counts = 9" FT repeat_region 26599474..26599485 FT /note="CA repeat" FT exon complement(26599526..26599547) FT /note="XPOUND prediction, score = 0.254" FT exon complement(26600020..26600090) FT /note="GRAIL, score = 75%, comment = excellent" FT exon complement(26600049..26600081) FT /note="XPOUND prediction, score = 0.504" FT repeat_region 26600809..26600944 FT /rpt_family="THE" FT /note="87% identity: matches 1..136 of consensus" FT repeat_region 26600964..26601176 FT /rpt_family="THE" FT /note="91% identity: matches 2..214 of consensus" FT repeat_region 26601919..26601952 FT /rpt_family="at repeat" FT /rpt_type=TANDEM FT /note="homology = 88.2%, counts = 17" FT repeat_region 26601962..26602240 FT /rpt_family="L1" FT /note="87% identity: matches 245..521 of consensus" FT repeat_region complement(26601962..26602243) FT /rpt_family="ALU" FT /note="90% identity: matches 329..607 of consensus" FT exon complement(26601985..26602009) FT /note="XPOUND prediction, score = 0.269" FT exon complement(26602041..26602074) FT /note="XPOUND prediction, score = 0.245" FT exon complement(26602147..26602243) FT /note="MZEF prediction, score = 0.714" FT repeat_region 26602887..26602900 FT /note="TTCCT repeat" FT exon complement(26604404..26604452) FT /note="XPOUND prediction, score = 0.332" FT exon complement(26604428..26604452) FT /note="GRAIL, score = 54%, comment = good" FT exon complement(26604643..26604652) FT /note="XPOUND prediction, score = 0.200" FT repeat_region 26604819..26605084 FT /rpt_family="ALU" FT /note="92% identity: matches 312..577 of consensus" FT repeat_region complement(26604820..26605084) FT /rpt_family="L1" FT /note="88% identity: matches 251..516 of consensus" FT exon 26606694..26606776 FT /note="MZEF prediction, score = 0.551" FT repeat_region 26608493..26608581 FT /rpt_family="THE" FT /note="87% identity: matches 83..171 of consensus" FT repeat_region 26608603..26608636 FT /rpt_family="tc repeat" FT /rpt_type=TANDEM FT /note="homology = 91.2%, counts = 17" FT repeat_region 26608612..26608636 FT /note="CT repeat" FT repeat_region 26608646..26608700 FT /rpt_family="THE" FT /note="92% identity: matches 200..254 of consensus" FT repeat_region 26608674..26608803 FT /rpt_family="THE" FT /note="86% identity: matches 244..376 of consensus" FT exon complement(26608950..26609047) FT /note="XPOUND prediction, score = 0.274" FT repeat_region 26610587..26610652 FT /rpt_family="ALU" FT /note="86% identity: matches 147..212 of consensus" FT repeat_region 26610638..26610698 FT /rpt_family="ALU" FT /note="90% identity: matches 836..896 of consensus" FT repeat_region 26611492..26611700 FT /rpt_family="aaaaataaaaa repeat" FT /rpt_type=TANDEM FT /note="homology = 57.9%, counts = 19" FT exon 26612329..26612452 FT /note="GRAIL, score = 55%, comment = good" FT repeat_region 26613191..26613302 FT /rpt_family="ALU" FT /note="83% identity: matches 12..123 of consensus" FT exon complement(26613503..26613526) FT /note="XPOUND prediction, score = 0.262" FT exon complement(26613838..26614086) FT /note="GENSCAN prediction, score = 11.73" FT exon complement(26613994..26614065) FT /note="XPOUND prediction, score = 0.441" FT repeat_region 26614384..26614464 FT /rpt_family="L1" FT /note="92% identity: matches 258..338 of consensus" FT repeat_region complement(26614396..26614471) FT /rpt_family="L1" FT /note="88% identity: matches 169..244 of consensus" FT exon complement(26615627..26615676) FT /note="XPOUND prediction, score = 0.254" FT exon 26616103..26616206 FT /note="GRAIL, score = 82%, comment = excellent" FT repeat_region 26616241..26616358 FT /rpt_family="ALU" FT /note="89% identity: matches 1..118 of consensus" FT repeat_region complement(26616247..26616358) FT /rpt_family="L1" FT /note="87% identity: matches 409..520 of consensus" FT repeat_region 26616379..26616492 FT /rpt_family="L1" FT /note="89% identity: matches 246..359 of consensus" FT repeat_region complement(26616390..26616492) FT /rpt_family="L1" FT /note="88% identity: matches 195..297 of consensus" FT exon complement(26619059..26619086) FT /note="XPOUND prediction, score = 0.230" FT repeat_region complement(26619851..26619915) FT /rpt_family="L1" FT /note="92% identity: matches 465..529 of consensus" FT repeat_region 26619851..26620070 FT /rpt_family="ALU" FT /note="85% identity: matches 458..678 of consensus" FT repeat_region 26620173..26620208 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 80.6%, counts = 18" FT repeat_region 26620208..26620259 FT /rpt_family="ALU" FT /note="94% identity: matches 275..325 of consensus" FT exon complement(26620431..26620449) FT /note="XPOUND prediction, score = 0.230" FT repeat_region 26621404..26623050 FT /rpt_family="L1" FT /note="88% identity: matches 2015..3682 of consensus" FT exon 26622007..26622339 FT /note="GENSCAN prediction, score = 10.17" FT /note="GRAIL, score = 45%, comment = marginal" FT exon 26622711..26622854 FT /note="GRAIL, score = 61%, comment = good" FT exon complement(26623932..26624000) FT /note="MZEF prediction, score = 0.567" FT exon complement(26624229..26624444) FT /note="GRAIL, score = 65%, comment = good shadow" FT exon complement(26624503..26624568) FT /note="XPOUND prediction, score = 0.251" FT exon complement(26624717..26624778) FT /note="XPOUND prediction, score = 0.257" FT exon 26625373..26625615 FT /note="GENSCAN prediction, score = 15.48" FT exon 26625472..26625534 FT /note="GRAIL, score = 64%, comment = good" FT repeat_region 26625817..26625854 FT /rpt_family="tc repeat" FT /rpt_type=TANDEM FT /note="homology = 81.6%, counts = 19" FT repeat_region 26625829..26625841 FT /note="TC repeat" FT exon 26626125..26626271 FT /note="GRAIL, score = 83%, comment = excellent" FT exon complement(26627224..26627261) FT /note="XPOUND prediction, score = 0.561" FT repeat_region 26627344..26627619 FT /rpt_family="ALU" FT /note="91% identity: matches 308..583 of consensus" FT repeat_region complement(26627344..26627619) FT /rpt_family="L1" FT /note="89% identity: matches 245..521 of consensus" FT repeat_region 26627627..26627641 FT /note="AAAC repeat" FT exon complement(26628251..26628267) FT /note="XPOUND prediction, score = 0.274" FT exon complement(26629417..26629439) FT /note="XPOUND prediction, score = 0.270" FT exon complement(26629883..26629993) FT /note="MZEF prediction, score = 0.847" FT exon 26631503..26631607 FT /note="GRAIL, score = 54%, comment = good" FT repeat_region 26631683..26631694 FT /note="GAG repeat" FT repeat_region 26631701..26631713 FT /note="CCT repeat" FT exon 26632483..26632659 FT /note="GENSCAN prediction, score = 5.59" FT /note="GRAIL, score = 95%, comment = excellent" FT repeat_region 26632667..26632680 FT /note="TTTTG repeat" FT exon complement(26632752..26632845) FT /note="XPOUND prediction, score = 0.476" FT repeat_region 26633465..26633488 FT /note="ATT repeat" FT repeat_region 26633465..26633509 FT /rpt_family="attattttt repeat" FT /rpt_type=TANDEM FT /note="homology = 86.7%, counts = 5" FT repeat_region 26633486..26633509 FT /rpt_type=INVERTED FT /note="IR6, 100% complementary to IR6' (107397..107420)" FT repeat_region complement(26633514..26633794) FT /rpt_family="ALU" FT /note="94% identity: matches 1..281 of consensus" FT repeat_region 26633514..26633794 FT /rpt_family="L1" FT /note="90% identity: matches 245..526 of consensus" FT misc_feature 26633640..26633791 FT /note="CpG_island (%GC=59.9, o/e=1.17, #CpGs=14)" FT exon complement(26633696..26633728) FT /note="XPOUND prediction, score = 0.440" FT repeat_region 26633892..26633915 FT /rpt_type=INVERTED FT /note="IR6', 100% complementary to IR6 (106991..107014)" FT exon complement(26633931..26633940) FT /note="XPOUND prediction, score = 0.206" FT repeat_region complement(26634099..26634220) FT /rpt_family="THE" FT /note="85% identity: matches 142..264 of consensus" FT repeat_region complement(26634285..26634469) FT /rpt_family="THE" FT /note="89% identity: matches 1..182 of consensus" FT exon complement(26634738..26634892) FT /note="XPOUND prediction, score = 0.796" FT exon complement(26634753..26634852) FT /note="GRAIL, score = 85%, comment = excellent shadow" FT exon 26634768..26634844 FT /note="GRAIL, score = 70%, comment = good" FT exon 26635184..26635266 FT /note="GRAIL, score = 73%, comment = good" FT exon complement(26635805..26635852) FT /note="GRAIL, score = 53%, comment = good shadow" FT exon 26635835..26635964 FT /note="GRAIL, score = 67%, comment = good" FT exon complement(26636092..26636214) FT /note="GRAIL, score = 74%, comment = good shadow" FT exon complement(26636273..26636289) FT /note="XPOUND prediction, score = 0.371" FT exon complement(26637636..26637731) FT /note="GRAIL, score = 57%, comment = good" FT exon complement(26638123..26638189) FT /note="XPOUND prediction, score = 0.331" FT exon complement(26638789..26638810) FT /note="XPOUND prediction, score = 0.264" FT exon complement(26638981..26639068) FT /note="MZEF prediction, score = 0.660" FT exon complement(26639103..26639175) FT /note="GRAIL, score = 92%, comment = excellent" FT exon complement(26639108..26639175) FT /note="XPOUND prediction, score = 0.462" FT exon 26639120..26639207 FT /note="GRAIL, score = 79%, comment = excellent shadow" FT repeat_region 26640462..26640734 FT /rpt_family="L1" FT /note="91% identity: matches 245..519 of consensus" FT repeat_region complement(26640462..26640741) FT /rpt_family="ALU" FT /note="94% identity: matches 1..281 of consensus" FT misc_feature 26640504..26640738 FT /note="CpG_island (%GC=59.1, o/e=0.86, #CpGs=18)" FT exon 26640801..26641051 FT /note="MZEF prediction, score = 0.661" FT exon complement(26643446..26643616) FT /note="GRAIL, score = 49%, comment = marginal shadow" FT exon 26643945..26644104 FT /note="GRAIL, score = 68%, comment = good" FT exon complement(26644137..26644170) FT /note="XPOUND prediction, score = 0.284" FT repeat_region 26645141..26645464 FT /rpt_family="ta repeat" FT /rpt_type=TANDEM FT /note="homology = 78.7%, counts = 162" FT repeat_region 26645178..26645310 FT /rpt_type=INVERTED FT /note="IR7, 81% complementary to IR7' (118818..118952)" FT repeat_region 26645313..26645447 FT /rpt_type=INVERTED FT /note="IR7', 81% complementary to IR7 (118683..118815)" FT repeat_region 26645423..26645448 FT /note="TA repeat" FT exon complement(26645884..26646057) FT /note="MZEF prediction, score = 0.853" FT repeat_region 26650217..26650241 FT /rpt_type=INVERTED FT /note="IR8, 88% complementary to IR8' (123754..123778)" FT repeat_region 26650249..26650273 FT /rpt_type=INVERTED FT /note="IR8', 88% complementary to IR8 (123722..123746)" FT exon complement(26650373..26650396) FT /note="GRAIL, score = 71%, comment = good" FT exon 26651150..26651239 FT /note="GENSCAN prediction, score = 4.27" FT /note="MZEF prediction, score = 0.960" FT repeat_region complement(26651510..26651589) FT /rpt_family="THE" FT /note="86% identity: matches 31..112 of consensus" FT repeat_region complement(26651551..26651673) FT /rpt_family="THE" FT /note="89% identity: matches 99..221 of consensus" FT repeat_region complement(26651808..26651861) FT /rpt_family="THE" FT /note="94% identity: matches 1..54 of consensus" FT exon complement(26652069..26652160) FT /note="MZEF prediction, score = 0.564" FT exon complement(26652102..26652208) FT /note="GRAIL, score = 50%, comment = good" FT repeat_region 26652687..26652738 FT /rpt_family="tg repeat" FT /rpt_type=TANDEM FT /note="homology = 88.5%, counts = 26" FT repeat_region 26652697..26652730 FT /note="TG repeat" FT exon complement(26652744..26652753) FT /note="XPOUND prediction, score = 0.762" FT repeat_region 26653121..26653133 FT /note="AC repeat" FT exon 26653420..26653622 FT /note="GENSCAN prediction, score = 3.26" FT exon complement(26653699..26653739) FT /note="XPOUND prediction, score = 0.306" FT exon 26655149..26655249 FT /note="GRAIL, score = 84%, comment = excellent" FT exon complement(26656774..26656806) FT /note="XPOUND prediction, score = 0.919" FT exon complement(26657724..26657740) FT /note="XPOUND prediction, score = 0.714" FT repeat_region complement(26658049..26658131) FT /rpt_family="L1" FT