ID BX470250; SV 1; circular; genomic DNA; CON; PRO; 5339179 BP. XX AC BX470250; XX PR Project:PRJNA24; XX DT 09-AUG-2003 (Rel. 76, Created) DT 13-MAY-2009 (Rel. 100, Last updated, Version 6) XX DE Bordetella bronchiseptica strain RB50, complete genome XX KW complete genome. XX OS Bordetella bronchiseptica OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-5339179 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the INSDC. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat Genet 35(1):0-0(2003). XX DR ENA; ERS000052. DR GR; BX470250_GR. XX CO join(BX640437.1:1..347356,BX640438.1:51..347786,BX640439.1:51..346362, CO BX640440.1:51..349497,BX640441.1:51..348624,BX640442.1:51..349876, CO BX640443.1:51..346274,BX640444.1:51..349008,BX640445.1:51..348706, CO BX640446.1:51..348642,BX640447.1:51..349442,BX640448.1:51..347137, CO BX640449.1:51..348074,BX640450.1:51..346287,BX640451.1:51..343473, CO BX640452.1:51..123385) XX FH Key Location/Qualifiers FH FT source 1..5339179 FT /organism="Bordetella bronchiseptica" FT /strain="RB50" FT /mol_type="genomic DNA" FT /db_xref="taxon:518" FT CDS 1..1920 FT /transl_table=11 FT /gene="gidA" FT /locus_tag="BB0001" FT /product="glucose inhibited division protein A" FT /note="ortholog of Bordetella pertussis (BX470248) BP0001" FT /protein_id="CAE30503.1" FT /translation="MDFPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQM FT SCNPSIGGIGKGHLVKEVDALGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLY FT RNAIRARLENQPNLWLFQQAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLI FT HVGLQNYSGGRAGDPPANSLGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDL FT DPVPVFSFLGKASMHPRQLPCWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSI FT EDKIHRFADKASHQVFLEPEGLNTHEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRP FT GYAIEYDYFDPRALKSTLETKAISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGK FT EPWVPRRDEAYLGVLVDDLVTRGVTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGL FT VDDVRWDAFSRKRDAVAQEVERLKSTWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRP FT NVSYEALMQARTDEGELLAGPGVLEDDVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQ FT PIPADIDYDAVTSLSFEVRQKLKTHRPETIGQAARVSGVTPAAISLLLIHLKRLHYGSR FT KQAA" FT misc_feature 19..1893 FT /note="HMMPfam hit to PF01134, DE Glucose inhibited FT division protein A, score 0" FT misc_feature 820..864 FT /note="PS01280 Glucose inhibited division protein A family FT signature 1." FT misc_feature 1810..1875 FT /note="Predicted helix-turn-helix motif with score FT 1129.000, SD 3.03 at aa 604-625, sequence FT ETIGQAARVSGVTPAAISLLLI" FT CDS 1917..2549 FT /transl_table=11 FT /gene="gidB" FT /locus_tag="BB0002" FT /product="glucose inhibited division protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP0002" FT /protein_id="CAE30504.1" FT /translation="MSAVPDIPGGPAQRLAQACDALRLPADAGQQQKLLRYIEQMQRWN FT RTYNLTAIRDPGQMLVQHLFDSLSVVAPLERGLPGVVLAIMRAHWDVTCVDAVEKKTAF FT VRQMAGALGLPNLQAAHTRIEQLEPAQCDVVISRAFASLQDFAKLAGRHVREGGTLVAM FT KGKVPDDEIQALQQHGHWTVERIEPLVVPALDAQRCLIWMRRSQGNI" FT misc_feature 1917..2135 FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT misc_feature 2004..2519 FT /note="HMMPfam hit to PF02527, DE Glucose inhibited FT division protein, score 4.7e-42" FT CDS 2546..3343 FT /transl_table=11 FT /gene="parA" FT /gene_synonym="soj" FT /locus_tag="BB0003" FT /product="ParA family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0003" FT /protein_id="CAE30505.1" FT /translation="MKNIPPSKSARVFCIANQKGGVGKTTTAINLAAGLATHKQRVLLV FT DLDPQGNATMGSGIDKSTLESNLYQVLIGEAGIEQTRVRSESGGYDVLPANRELSGAEI FT DLVQMDERERQLKAAIDKIAGEYDFVLIDCPPTLSLLTLNGLAAAHGVIIPMQCEYFAL FT EGLSDLVNTIKRVHRNINNELRVIGLLRVMFDPRMTLQQQVSAQLESHFGDKVFTTVVP FT RNVRLAEAPSYGMPGVVYDRASRGAQAYIAFGAEMIERVKELD" FT misc_feature 2819..3154 FT /note="HMMPfam hit to PF00991, DE ParA family ATPase, score FT 1.5e-33" FT CDS 3350..4156 FT /transl_table=11 FT /locus_tag="BB0004" FT /product="Putative acetyltransferase, GnaT family" FT /note="ortholog of Bordetella pertussis (BX470248) BP0004" FT /protein_id="CAE30506.1" FT /translation="MPAVLAVPAAHPAPAAGGELARLEEAALNATTVREQMLYEGWLVR FT WAPSRAKRARCVNVLGLSTRPLDERLAYCTRWYAGHGVPLIVRLTSIGPDFSLDAQLHE FT RGFVAFDRTCVMAAPVVPFTAQAPSGLVFERTTPGRFAQEAGRLRGHDDAATAEHAARL FT QAAPLENLPLLVRDASGECIAAGLAAFDAELVGLFDIVTAPQRRRQGCGAAVLKYLLEQ FT ASHAGARQAYLQVEPQNTAARALYARFGFVDRYTYWYRSMSEATPV" FT misc_feature 3869..4105 FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 2.5e-14" FT CDS 4200..5117 FT /transl_table=11 FT /gene="parB" FT /locus_tag="BB0005" FT /product="probable chromosome partitioning protein ParB" FT /note="ortholog of Bordetella pertussis (BX470248) BP0005" FT /protein_id="CAE30507.1" FT /translation="MATKKPKGLGRGLDALLGADVPAIDNIGKAPAAAPEGPPATLPVS FT KMRAGKYQPRTRMDEGALNELAESIRTQGIMQPILVRALGADAPGQYEIIAGERRFRAA FT QLAGLKEVPVLVREVADENAAVMALIENIQREDLNPLEEAHGVRRLLDEFGLTHEQAAQ FT AIGRSRSATSNLLRLLNLAAPVQTMLLAGDVDMGHARALLAVDAATQIQLANQVIAKRL FT SVREAEKLVARAQKDVDAAPRKKGNGASRDVTRLEEALSDHLGTRVALKVGAREKGQIV FT IDFHGWEHLNSLLERQGLSGVVDA" FT misc_feature 4317..4598 FT /note="HMMPfam hit to PF02195, DE ParB-like nuclease FT domain, score 5.9e-34" FT misc_feature 4665..4730 FT /note="Predicted helix-turn-helix motif with score FT 1537.000, SD 4.42 at aa 156-177, sequence FT LTHEQAAQAIGRSRSATSNLLR" FT CDS 5110..6111 FT /transl_table=11 FT /gene="ansB" FT /locus_tag="BB0006" FT /product="L-asparaginase II precursor" FT /EC_number="3.5.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0006" FT /protein_id="CAE30508.1" FT /translation="MPEARLPRIAVLATGGTIAGAQTDAASGAYRAGSYGVGQLLAAVP FT QLAGLARIGAEQIANVGSQNMSHAVWRQLALRAAALCDDPATDGIVITHGTDTLEETAY FT FLSLVLPVDKPVVLLGAMRPATALSADGPVNLYNAVALACHPAARGRGPLVVMNEDIHL FT ARHVQKTAASGIAAFASPNAGRAGVMQGGRPVFHARAERQAADALLRPDELPQQAWPRV FT DIVHACVDLDGELIDFMAGRAQGIVLAGVGDGNATDAALQALQRASARGVAVVRASRTG FT SGRVGRNIEIDDDACGFIAAGDLSPQKARVLLTLGLCQTRDTARLQALFDSR" FT misc_feature 5110..5172 FT /note="Signal peptide predicted for BB0006 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.722) with cleavage site FT probability 0.254 between residues 21 and 22" FT misc_feature 5140..5166 FT /note="PS00144 Asparaginase / glutaminase active site FT signature 1." FT misc_feature 5158..6093 FT /note="HMMPfam hit to PF00710, DE Asparaginase, score FT 6.4e-100" FT misc_feature 5374..5406 FT /note="PS00917 Asparaginase / glutaminase active site FT signature 2." FT tRNA 6221..6307 FT /note="tRNA Tyr anticodon GTA, Cove score 72.20" FT tRNA 6496..6569 FT /note="tRNA Gly anticodon TCC, Cove score 82.17" FT tRNA 6576..6650 FT /note="tRNA Thr anticodon GGT, Cove score 86.85" FT CDS 6707..7897 FT /transl_table=11 FT /gene="tuf" FT /gene_synonym="tufA" FT /locus_tag="BB0007" FT /product="elongation factor Tu" FT /note="ortholog of Bordetella pertussis (BX470248) BP0007" FT /protein_id="CAE30509.1" FT /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEAR FT GYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDF FT PGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFS FT ISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILL FT RGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDV FT TGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK" FT misc_feature 6734..7324 FT /note="HMMPfam hit to PF00009, DE Elongation factor Tu GTP FT binding domain, score 8.5e-98" FT misc_feature 6761..6784 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 6857..6904 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 7358..7594 FT /note="HMMPfam hit to PF03144, DE Elongation factor Tu FT domain 2, score 5e-29" FT misc_feature 7604..7891 FT /note="HMMPfam hit to PF03143, DE Elongation factor Tu FT C-terminal domain, score 4.5e-60" FT tRNA 8008..8083 FT /note="tRNA Trp anticodon CCA, Cove score 85.26" FT CDS 8136..8516 FT /transl_table=11 FT /gene="secE" FT /gene_synonym="prlG" FT /locus_tag="BB0008" FT /product="preprotein translocase SecE subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0008" FT /protein_id="CAE30510.1" FT /translation="MSNTSIETVTSTADRIKLGLAVLVVIAGIVGFSMLDAQPMVARIG FT VFVGGLVVAALLAWFSEPGRRTLSFAGESYNEVKRVSWPTRKETIQMTGIVFAFVAVMG FT LLMWVLDKGIEWVLYGLLLGWK" FT misc_feature join(8181..8240,8250..8318,8412..8465) FT /note="3 probable transmembrane helices predicted for FT BB0008 by TMHMM2.0 at aa 16-35, 39-61 and 93-110" FT misc_feature 8331..8501 FT /note="HMMPfam hit to PF00584, DE SecE/Sec61-gamma subunits FT of protein translocation complex, score 5.5e-16" FT CDS 8526..9059 FT /transl_table=11 FT /gene="nusG" FT /locus_tag="BB0009" FT /product="transcription antitermination protein NusG" FT /note="ortholog of Bordetella pertussis (BX470248) BP0009" FT /protein_id="CAE30511.1" FT /translation="MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEV FT VEVKGGQKSITERRIFPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREV FT EKILNQMEEGVEKPRPKILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGR FT ATPVELDFSQVEKT" FT misc_feature 8529..8660 FT /note="HMMPfam hit to PF02357, DE Transcription termination FT factor nusG, score 1.3e-13" FT misc_feature 8895..9008 FT /note="HMMPfam hit to PF00467, DE KOW motif, score 8.6e-09" FT misc_feature 9003..9032 FT /note="PS01014 Transcription termination factor nusG FT signature." FT CDS 9123..9554 FT /transl_table=11 FT /gene="rplK" FT /gene_synonym="relC" FT /locus_tag="BB0010" FT /product="50S ribosomal protein L11" FT /note="ortholog of Bordetella pertussis (BX470248) BP0010" FT /protein_id="CAE30512.1" FT /translation="MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAK FT TQGMEPGLPIPVVITAFADKSFTFIMKTPPATVLIKKASGVQKGSAKPHTDKVGTLTRA FT QAEEIAKTKQPDLTAADLDAAVRTIAGSARSMGITVEGV" FT misc_feature 9144..9323 FT /note="HMMPfam hit to PF03946, DE Ribosomal protein L11, FT N-terminal domain, score 3.9e-33" FT misc_feature 9336..9542 FT /note="HMMPfam hit to PF00298, DE Ribosomal protein L11, FT RNA binding domain, score 2.3e-34" FT misc_feature 9501..9548 FT /note="PS00359 Ribosomal protein L11 signature." FT CDS 9557..10255 FT /transl_table=11 FT /gene="rplA" FT /locus_tag="BB0011" FT /product="50S ribosomal protein L1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0011" FT /protein_id="CAE30513.1" FT /translation="MAKLSKRAAAIAQKIDRTKLYPVGEALNLVKETATAKFDESIDVA FT VQLGIDPKKSDQLVRGSVVLPAGTGKTVRVAVFAQGEKADAARAAGADIVGLDDLAEQI FT KAGQMDFDVVIASPDTMRVVGALGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQIQY FT RTDKAGIIHATIGRASFGVEQLQNNLAALVDALQKARPAAAKGIYLRKLAVSSTMGGGA FT RVEIASLSAN" FT misc_feature 9599..10219 FT /note="HMMPfam hit to PF00687, DE Ribosomal protein FT L1p/L10e family, score 1.3e-117" FT misc_feature 9917..9973 FT /note="PS01199 Ribosomal protein L1 signature." FT CDS 10498..11022 FT /transl_table=11 FT /gene="rplJ" FT /locus_tag="BB0012" FT /product="50S ribosomal protein L10" FT /note="ortholog of Bordetella pertussis (BX470248) BP0013" FT /protein_id="CAE30514.1" FT /translation="MSLNRQEKAVVIEEVSAQVAKAQSIVIAEYRGLDVASVTVLRKTA FT RESGVYLRVLKNTLVRRAVAGTAFEPLSEQLTGPLIYGISADPVAAAKVLAGFAKSNDK FT LVIKAGSLPNSLLTQDGVKALATMPSREELLSKLLGTMQAPIAQFVRTLNEVPTKFARG FT LAAVRDQKAAA" FT misc_feature 10504..10797 FT /note="HMMPfam hit to PF00466, DE Ribosomal protein L10, FT score 1.5e-22" FT CDS 11104..11487 FT /transl_table=11 FT /gene="rplL" FT /locus_tag="BB0013" FT /product="50S ribosomal protein L7/L12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0014" FT /protein_id="CAE30515.1" FT /translation="MALSKAEILDAIAGMSVLELSELIKEMEEKFGVSAAAAAVAVAAP FT AAGGAGAAAAEEQTEFTVVLLEAGANKVSVIKAVRELTGLGLKEAKDLVDGAPKPVKEA FT LPKADAEAAKKKLEEAGAKVEVK" FT misc_feature 11281..11481 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00542, DE Ribosomal protein L7/L12 FT C-terminal domain, score 3.1e-37" FT CDS 11623..15759 FT /transl_table=11 FT /gene="rpoB" FT /gene_synonym="groN" FT /gene_synonym="nitB" FT /gene_synonym="rif" FT /gene_synonym="ron" FT /gene_synonym="stl" FT /gene_synonym="stv" FT /gene_synonym="tabD" FT /locus_tag="BB0014" FT /product="DNA-directed RNA polymerase beta chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0015" FT /protein_id="CAE30516.1" FT /translation="MQPRVGVLMPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLT FT FLQADTATSDRVNEGLQAAFSSIFPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTY FT ASPLRAKVRLVLLDREVSKPTIKEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHR FT SPGVFFEHDRGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILL FT KAIGMTPESILAHFFDFDNFELKSEGGMMEFVAERWKGEMARFDIADRDGKVIVEKDKR FT INAKHLRDLAAGGIQRVSVPEDFLYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRA FT ANVRDIQTLYTNDLDRGPYISQTLRADETADQMAARVAIYRMMRPGEPPTEEAVEALFQ FT RLFYSEETYDLSRVGRMKVNSRLGRGDDSTGPMTLTNEDILETIKVLVELRNGRGQIDD FT IDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQAETENLMPHDLINSKPISAAIK FT EFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIE FT TPEGPNIGLINSMALYARLNEYGFLETPYRKIIDGKVSDQIDYLSAIEESHYVIAQANA FT ALDDEGRFVDDLVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDDANRAL FT MGANMQRQAVPCLRPEKPLVGTGVERTVAVDSGTTVQALRGGVVDHVDADRVVIRVNDE FT ENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVARGDKVAKGDVLADGASTDLGELALGQ FT NMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIEELTVVARDTKLGPEEITRDISNL FT AETQLNRLDDSGIVYIGAEVSADDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDT FT SLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELRRYRQDLNDQLRIVENDQFDRI FT EKMLVGKAVNGGPRKLAKGATLTKAYLADLDRWQWFDIRLADEQHAVVLEQAKESLEQK FT RHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQPGDKMAGRHGNKGVVSRIT FT PVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQ FT AKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLKKGVPFATPVFDGATEEEIGKML FT ELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTIGYMHYLKLHHLVDDKMHARST FT GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDITGRTKVYEN FT IVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN" FT misc_feature 11890..15627 FT /note="HMMPfam hit to PF00562, DE RNA polymerase beta FT subunit, score 0" FT misc_feature 14890..14928 FT /note="PS01166 RNA polymerases beta chain signature." FT CDS 15759..20003 FT /transl_table=11 FT /gene="rpoC" FT /gene_synonym="tabB" FT /locus_tag="BB0015" FT /product="DNA-directed RNA polymerase beta' chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0016" FT /protein_id="CAE30517.1" FT /translation="MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSFGEVRKPETIN FT YRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGH FT IELASPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDD FT DFLAKTEEYGDDFRALMGAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLK FT VLEGFQKSGIKAEWMVMEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR FT LLELKAPEIILRNEKRMLQEAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQ FT NLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKK FT LVESQEPVVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFN FT ADFDGDQMAVHVPLSLEAQLEARTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRER FT INGKGEGIFFADVSEVQRAYDNGEVELQTRITVRLTEYERDEQGEWQPVKHRHETTVGR FT ALLSEILPKGLPFTVLNKALKKKEISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRG FT GISIAMEDMLIPKAKEGILAEASREVKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVG FT KAMMEQLATEPVVNRHGEEVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS FT IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITED FT DCGTSHGYAMKALVEGGEVIEPLRDRILGRVAAIDVVNPDTQETAIAAGTLLDEDLVDL FT IDRLGVDEVKVRTPLTCETRHGLCAHCYGRDLGRGSHVNVGEAVGVIAAQSIGEPGTQL FT TMRTFHIGGAASRSALASAVETKSNGTVGFASTMRYVTNAKGERVAISRSGELAIFDDN FT GRERERHKIPYGATVLVGDGEAVKAGTRLASWDPLTRPIVSEYSGAVRFENIEEGVTVA FT KQVDEVTGLSTLVVITPKTRGGKIVMRPQIKLVNENGEDVKIAGTDHSVNISFPVGALI FT TVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFG FT KDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGI FT EKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTEFIPGEQVERSEL FT LNENDRVVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDL FT RGLKENVIVGRLIPAGTGLAYHIARKDKEALEAAEREAARQLANPFEDAPVTVGGEPEA FT PAADTPSDDSAE" FT misc_feature 16461..18251 FT /note="HMMPfam hit to PF00623, DE RNA polymerase alpha FT subunit, score 1.4e-274" FT misc_feature 16740..16763 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(20112..20516) FT /transl_table=11 FT /locus_tag="BB0016" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0017" FT /protein_id="CAE30518.1" FT /translation="MPIILRPFLSSLSLAVLALSGCANLSQPAAEAPATPAALQALAEV FT RTEYGAGHYGEVIRRVARSDELAAAPKAVRIEAFKLQAFSYCVSNYTQLCEDAFVRILH FT LDSSFTLAPNEAGHPAWGPVFRAAQSKAGT" FT misc_feature complement(20424..20516) FT /note="Signal peptide predicted for BB0016 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.612 between residues 32 and 33" FT misc_feature complement(20451..20483) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 20757..21989 FT /transl_table=11 FT /locus_tag="BB0017" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0018" FT /protein_id="CAE30519.1" FT /translation="MPLSAASQHPRSPFAGAAPLAHRPLSAIAATAAGGVPQARIKRLL FT GELVPQLASVHEQGHICGDITVDSVGLDESGRAHLLALNGAAQGEAALPAPGYAPFELY FT VEDPAWPRGPWTDIYALSAVAHSLITGRRPPAAPERSVNDGYQPLAQRDLPKYDNDFLR FT AIDAGLAVRPQARPHTLEAFVDSLKFPEPEPPAEAMAPLPSEPPPRDEVRDEEPVRQRP FT AVRSILFAILLALATLGVAVYWWQRLTGTPSGVITSSERVTTPGATATPSDSREAEPPA FT AGAAPPQGGDAGSADTSGAAPPAQAQAGPDAAPAPDVAPEGAATDAQAESEAAATPAPA FT AARVTVRINVQPWGEIWINGVRRGVSPPMKELRLAPGRYSVVVRNADLPPYRATLEVKA FT GQPARITHVFQ" FT misc_feature 21423..21491 FT /note="1 probable transmembrane helix predicted for BB0017 FT by TMHMM2.0 at aa 223-245" FT CDS complement(22005..24350) FT /transl_table=11 FT /locus_tag="BB0018" FT /product="probable two-component sensor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0019" FT /protein_id="CAE30520.1" FT /translation="MRRRRPLPDSPARRWLAARTGIMLTMVLVTVAGLLGALGGMGRID FT LTLYDRAVSLSGRPASPEILIVMIDDDSIATLGRWPWSRTVHAALLDKLGEARAVGLDI FT IFAEPDRAEPAVDAQLAEAIRRNGKVVLPVVLNRLPRATGHEPPLESLAQAAAALGFIN FT VELDTDGVLRRSIWTAQVGTALWPHFSLSLMSVGGEAQQALQFATAQLAAGQTRIPYAG FT PPGHLRTVSYISVLQGNVPPEWIRGKYVLVGSWATGLTDAFPTPVSHQANGMAGVEIIG FT NMLQAARQNISYTVASPWHNALAAALPVLLLCLGLRVLSPKAALVLNGAILLAVLPATY FT LALRFGQVWFPPTATMLVLALCYPIWSWRSQEAVLRYMDNELKRLQREYPPVLNEGRTH FT TLLVNRSLEDRLGKLREALARVRNLRRFLTDGLDGMPDATLVFDPRGRLQFRNRAAIQY FT FRSLGLRAPRHGQLAADLFQRAITDERNRQTLTEALRHTPPDAQDSPWNVDMEVRDQAG FT RDLILKCAPIRTDEGAFAGTVATLTDITVIRQAERKREETLRFISHDMRAPQNSILALV FT AMNQDSLNGVQQSDALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREAT FT DDFWAPARARGIRIEIAEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIRCTVVR FT DADDWVASIQDDGPGIAPQDQLQIFQPFTRVNTAGSNEVGGAGLGLAFVRTVAERLGGR FT AEVISPPSGTGPAGSTFVLRLPASPPPG" FT misc_feature complement(22020..22367) FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 6.6e-38" FT misc_feature complement(22497..22694) FT /note="HMMPfam hit to PF00512, DE His Kinase A FT (phosphoacceptor) domain, score 0.0055" FT misc_feature complement(24255..24350) FT /note="Signal peptide predicted for BB0018 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.671) with cleavage site FT probability 0.192 between residues 32 and 33" FT CDS complement(24352..25458) FT /transl_table=11 FT /locus_tag="BB0019" FT /product="putative peptidoglycan binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0020" FT /protein_id="CAE30521.1" FT /translation="MIRPFAPAFMLVCALVASAAVQAQPAGSLGENFLYRVRSGDTLIA FT LASTYTGNESNWSVLQTLNRVDDPQRLPIALELRIPLAMIPVQAAGAEVVHVSGSATAD FT GQALRVGMQIVEGSTIRTASGSFVTLKLSDGSQVTIPENGTVAANRLRQFQRVPLTDSI FT FQVQQGELESRVAPGGQGVGRFEIRTPVAVTGVRGTRFRVKSSPQGASSEVLEGSVRLQ FT PHAPDAAPATPVAVSSGYGANVGSDGAFSGVQALLPAPQLQAPARAASGGWTVPFAPVS FT GASAYIVRVSRDAEGMHVVTSDRFDTNDVRFRAPGAGTYYVAVRAVDASGLNGREAVQP FT FEGANVLSTPYGLSVATGTGDLVLLSEF" FT misc_feature complement(25216..25356) FT /note="HMMPfam hit to PF01476, DE LysM domain, score FT 0.00042" FT misc_feature complement(25390..25458) FT /note="Signal peptide predicted for BB0019 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.967 between residues 23 and 24" FT CDS complement(25476..26210) FT /transl_table=11 FT /locus_tag="BB0020" FT /product="probable two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0021" FT /protein_id="CAE30522.1" FT /translation="MSQRMKIASLEDDLDQAQHIQQVLSAAGYTCTSYPRSLDLLAALR FT VQAFDLILLDWQLPDMNGDEVVRRLRTSYGFAVPIIFLTSRDQESDLVQGLQAGADDYI FT VKPMRPAELLARVAALLRRSQGALPDYLPFSVAGYRIDPNERSIALDGQVVPLPPKEFE FT LAQLFFRNIGRLLSRDVLAESVWNREIPATSRTLDTHLSNIRQKLQLRPQNGVRLSSSY FT ALGYRLELVSDPQPQADDAKDD" FT misc_feature complement(25536..25754) FT /note="HMMPfam hit to PF00486, DE Transcriptional FT regulatory protein, C terminal, score 3.8e-10" FT misc_feature complement(25836..26198) FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 3.2e-34" FT CDS 26468..27280 FT /transl_table=11 FT /locus_tag="BB0021" FT /product="Two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0022" FT /protein_id="CAE30523.1" FT /translation="MRNTAPHCLKCVQARAFPFERLKAGREPADWQGFVMKQLSTLIMT FT PDDADRDRIIAAMLLAGISAKGCSTPLELFGLLSEDTYDAVVMDLSELGELGYALVARL FT RGSPELGIIVIGGNLTLDARLRCLQSGADACVPLPADERELACVLLALARRLPAWQEDE FT EAVAQRGTDEGWELRDQDWTLVAPGGEELSLSANERQIVRLLLGAAGRAIGRAELASEL FT AVDGPAVRSTGERSIDVIVSRLRRKAELAGLVLPIRTVYGSGYLFANS" FT misc_feature 26582..26938 FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 0.0016" FT misc_feature 27035..27259 FT /note="HMMPfam hit to PF00486, DE Transcriptional FT regulatory protein, C terminal, score 2.4e-05" FT CDS complement(27310..28245) FT /transl_table=11 FT /locus_tag="BB0022" FT /product="putative metal transporter" FT /protein_id="CAE30524.1" FT /translation="MDSLPPSPPGRHGHSFLGPAHDENAKRTRWVVLLTLAMMVGEIVA FT GYLTGSMALLADGFHMATHAGALGIAAIAYAYAKRNADNRAFSFGTGKVGELAGFASAL FT MLAMVSLAIGVESAIRLVQPTDVAFGEATLIAVVGLGVNLVSALLLGGGHAGHVHAEHH FT HPGHARHPHGHDNNLRSAYVHVLADALTSVLAIVALLAGRYLGWIWLDPVIGMVGAVVI FT ARWAWTLMRDTGAILLDKADRHLEAEVRGAIETAGDATIADLHVWQIGPQAHAAIVSVV FT AARGVTASQIRERVSSIHEVRHLTVELVPA" FT misc_feature complement(27316..28164) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01545, DE Cation efflux family, FT score 5e-54" FT misc_feature complement(join(27565..27633,27646..27705,27784..27852, FT 27889..27957,28015..28074,28093..28161)) FT /note="6 probable transmembrane helices predicted for FT BB0022 by TMHMM2.0 at aa 29-51, 58-77, 97-119, 132-154, FT 181-200 and 205-227" FT CDS complement(28251..28526) FT /transl_table=11 FT /locus_tag="BB0023" FT /product="conserved hypothetical protein" FT /protein_id="CAE30525.1" FT /translation="MSHLSDHKDELLKRTQRIAGQVQAIQRSLETEADCESILHLVAAT FT RGALNGLLDEILEAHAREHVAHPDLTPDARSKGLEALVSAIRRYSK" FT misc_feature complement(28257..28445) FT /note="HMMPfam hit to PF02583, DE Uncharacterized BCR, FT COG1937, score 4e-07" FT CDS 29040..29480 FT /transl_table=11 FT /gene="rpsL" FT /locus_tag="BB0024" FT /product="30S ribosomal protein S12" FT /note="ortholog of Bordetella pertussis (BX470248) BP3608" FT /protein_id="CAE30526.1" FT /translation="MLGGCEYVSTYQWYVKGISKVMPTISQLVRKPREVSIIKSKSPAL FT ENCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGYEVISYIGGEGHNLQEHSVVLVR FT GGRVKDLPGVRYHIVRGSLDLQGVKDRKQARSKYGAKRPKKA" FT misc_feature 29103..29471 FT /note="HMMPfam hit to PF00164, DE Ribosomal protein S12, FT score 3.8e-79" FT misc_feature 29229..29252 FT /note="PS00055 Ribosomal protein S12 signature." FT CDS 29644..30114 FT /transl_table=11 FT /gene="rpsG" FT /locus_tag="BB0025" FT /product="30S ribosomal protein S7" FT /note="ortholog of Bordetella pertussis (BX470248) BP3609" FT /protein_id="CAE30527.1" FT /translation="MPRRREVPKREILPDPKFGSVELAKFMNVVMLDGKKAVAERIIYG FT ALEQVQVKTGKDAIEVFNLAINNIKPIVEVKSRRVGGANYQVPVEVRPVRRLALAMRWL FT REAAKKRGEKSMDLRLAGELIDASEGRGAAMKKREDTHKMAEANKAFSHFRW" FT misc_feature 29644..30108 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00177, DE Ribosomal protein FT S7p/S5e, score 2.9e-89" FT misc_feature 29701..29781 FT /note="PS00052 Ribosomal protein S7 signature." FT CDS 30132..32234 FT /transl_table=11 FT /gene="fusA" FT /gene_synonym="fus" FT /gene_synonym="far1" FT /locus_tag="BB0026" FT /product="elongation factor G" FT /note="ortholog of Bordetella pertussis (BX470248) BP3610" FT /protein_id="CAE30528.1" FT /translation="MARKTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKLGETHD FT GSATMDWMEQEQERGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMR FT VLDGACMVYCAVGGVQPQSETVWRQANKYGVPRLAFVNKMDRTGANFFKVYDQLKTRLR FT ANPVPIVIPIGAEDSFTGVVDLVKMKAIIWDEASQGTKFEYGDIPAELEGTANEWREKL FT VEAAAESSEELMNKYLETGSLDEDDINVALRQRTIAGEIQPMLCGTAFKNKGVQRMLDA FT VIDYLPSPADIPPVDGQDDDGNPIKRSADDAEKFSALAFKLMSDPFVGQLTFVRVYSGV FT LKSGDTVYNPIKGKKERIGRLLQMHANNREEIKEVLAGDIAAVVGLKDVTTGETLCDID FT SHILLERMEFPEPVISQAVEPKSKADQEKMGLALSRLAQEDPSFRVRSDEESGQTIISG FT MGELHLEILVDRMRREFGVEANVGKPQVAYRETIRKNCDEVEGKFVKQSGGRGQYGHVV FT LKLEPLPPGGGYEFVDAIKGGVVPREYIPAVDKGIQETLPAGILAGYPVVDVKATLFFG FT SYHDVDSNENAFKMAASMAFKEGMRRASPVLLEPMMAVEVETPEDYAGTVMGDLSSRRG FT MVQGMDDIVGGGKTIKAEVPLAEMFGYATNLRSLTQGRATYTMEFKHYAEAPKNVADEV FT IAARGK" FT misc_feature 30153..31001 FT /note="HMMPfam hit to PF00009, DE Elongation factor Tu GTP FT binding domain, score 4e-107" FT misc_feature 30180..30203 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 30282..30329 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 31080..31319 FT /note="HMMPfam hit to PF03144, DE Elongation factor Tu FT domain 2, score 1e-26" FT misc_feature 31581..31943 FT /note="HMMPfam hit to PF03764, DE Elongation factor G, FT domain IV, score 1.7e-71" FT misc_feature 31947..32213 FT /note="HMMPfam hit to PF00679, DE Elongation factor G FT C-terminus, score 9.1e-49" FT CDS 32311..33501 FT /transl_table=11 FT /gene="tuf" FT /gene_synonym="tufA" FT /gene_synonym="tufB" FT /locus_tag="BB0027" FT /product="elongation factor Tu" FT /note="ortholog of Bordetella pertussis (BX470248) BP3611" FT /protein_id="CAE30529.1" FT /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEAR FT GYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDF FT PGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFS FT ISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILL FT RGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDV FT TGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK" FT misc_feature 32338..32928 FT /note="HMMPfam hit to PF00009, DE Elongation factor Tu GTP FT binding domain, score 6.2e-93" FT misc_feature 32365..32388 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 32461..32508 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 32962..33198 FT /note="HMMPfam hit to PF03144, DE Elongation factor Tu FT domain 2, score 5e-29" FT misc_feature 33208..33495 FT /note="HMMPfam hit to PF03143, DE Elongation factor Tu FT C-terminal domain, score 4.5e-60" FT CDS 33565..33876 FT /transl_table=11 FT /gene="rpsJ" FT /gene_synonym="nusE" FT /locus_tag="BB0028" FT /product="30S ribosomal protein S10" FT /note="ortholog of Bordetella pertussis (BX470248) BP3612" FT /protein_id="CAE30530.1" FT /translation="MKNQKIRIRLKAFDYKLIDQSAAEIVDTAKRTGAVVRGPVPLPTR FT IRRYDVLRSPHVNKTSRDQFEIRTHQRLMDIVDPTDKTVDALMRLDLPAGVDVEIALQ" FT misc_feature 33577..33864 FT /note="HMMPfam hit to PF00338, DE Ribosomal protein FT S10p/S20e, score 9.3e-57" FT misc_feature 33649..33696 FT /note="PS00361 Ribosomal protein S10 signature." FT CDS 34222..34923 FT /transl_table=11 FT /gene="rplC" FT /locus_tag="BB0029" FT /product="50S ribosomal protein L3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3613" FT /protein_id="CAE30531.1" FT /translation="MEKTMSNSTPTPAAHRLGLVGRKVGMTRIFTEDGESIPVTVLDVS FT NNRVTQVKSLESDGYAAIQVTYGTRRATRVVKPQAGHYAKAGAEAGSILKEFRLDPARA FT AEFAAGAVIAVESVFEAGQQVDVTGTSIGKGFAGTIKRHNFGSQRASHGNSRSHRVPGS FT IGQAQDPGRIFPGKRMSGHMGDVTRTVQNLDVVRVDAERGLLMVKGAVPGHAGGDVIVR FT PAVKAPAKKGA" FT misc_feature 34288..34887 FT /note="HMMPfam hit to PF00297, DE Ribosomal protein L3, FT score 2.1e-87" FT misc_feature 34576..34647 FT /note="PS00474 Ribosomal protein L3 signature." FT CDS 34928..35545 FT /transl_table=11 FT /gene="rplD" FT /locus_tag="BB0030" FT /product="50S ribosomal protein L4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3614" FT /protein_id="CAE30532.1" FT /translation="MDLKLLNDQGQAATFSAPDTIFGRDFNEALVHQIVVAFQANARSG FT NRAQKDRAEVKHSTKKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKM FT YRAGIRSILSQLAREDRVAVVDTFTLESPKTKLAAAKLKSLGLDSVLIITDNVDENVYL FT ATRNLPHVAVVEPRYADPLSLIHYKKVLITKPAIAQLEEMLG" FT misc_feature 34964..35536 FT /note="HMMPfam hit to PF00573, DE Ribosomal protein L4/L1 FT family, score 7.8e-47" FT CDS 35542..35838 FT /transl_table=11 FT /gene="rplW" FT /locus_tag="BB0031" FT /product="50S ribosomal protein L23" FT /note="ortholog of Bordetella pertussis (BX470248) BP3615" FT /protein_id="CAE30533.1" FT /translation="MNAERLMQVILAPIVTEKATFVAEKNQQVAFRVVADATKPEIKAA FT VELLFKVQVESVQVLNRKGKVKRFGRFVGRRRNERKAYVALKDGQEIDFAEVK" FT misc_feature 35560..35832 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00276, DE Ribosomal protein L23, FT score 1.2e-25" FT CDS 35839..36666 FT /transl_table=11 FT /gene="rplB" FT /locus_tag="BB0032" FT /product="50S ribosomal protein L2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3616" FT /protein_id="CAE30534.1" FT /translation="MALVKVKPTSAGRRGMVKVVSPKLHKGAPHAALLEKKTRGSGRNN FT NGHITVRHRGGGHKQHYRVVDFRRNKDGIPAKVERLEYDPNRTAHIALLCYADGERRYI FT IAPRGLEVGATLISGIEAPIRAGNTLPIRNIPVGTTIHCIEMIPGKGAQMARSAGASAV FT LMAREGTYAQVRLRSGEVRRVHIQCRATIGEVGNEEHSLRQIGKAGAMRWRGVRPTVRG FT VAMNPIDHPHGGGEGRTGEAREPVSPWGTPAKGFKTRRNKRTNNMIVQRRKRK" FT misc_feature 35962..36192 FT /note="HMMPfam hit to PF00181, DE Ribosomal Proteins L2, FT RNA binding domain, score 3.2e-45" FT misc_feature 36208..36594 FT /note="HMMPfam hit to PF03947, DE Ribosomal Proteins L2, FT C-terminal domain, score 3.9e-82" FT misc_feature 36490..36525 FT /note="PS00467 Ribosomal protein L2 signature." FT CDS 36679..36954 FT /transl_table=11 FT /gene="rpsS" FT /locus_tag="BB0033" FT /product="30S ribosomal protein S19" FT /note="ortholog of Bordetella pertussis (BX470248) BP3617" FT /protein_id="CAE30535.1" FT /translation="MSRSIKKGPFVDAHLIKKVDAAVAGKDKKPIKTWSRRSTVLPEFI FT GLTIAVHNGRQHVPVYINENMVGHKLGEFALTRTFKGHAADKKSKR" FT misc_feature 36685..36927 FT /note="HMMPfam hit to PF00203, DE Ribosomal protein S19, FT score 1.1e-50" FT misc_feature 36835..36909 FT /note="PS00323 Ribosomal protein S19 signature." FT CDS 36958..37287 FT /transl_table=11 FT /gene="rplV" FT /locus_tag="BB0034" FT /product="50S ribosomal protein L22" FT /note="ortholog of Bordetella pertussis (BX470248) BP3618" FT /protein_id="CAE30536.1" FT /translation="METTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAV FT ILKKAVESAIANAEHNDGADIDELKVTTIFVDKAQSMKRFSARAKGRGNRIEKQTCHIT FT VKVGA" FT misc_feature 36970..37281 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00237, DE Ribosomal protein FT L22p/L17e, score 1.6e-49" FT misc_feature 37018..37041 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 37204..37278 FT /note="PS00464 Ribosomal protein L22 signature." FT CDS 37297..38088 FT /transl_table=11 FT /gene="rpsC" FT /locus_tag="BB0035" FT /product="30S ribosomal protein S3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3619" FT /protein_id="CAE30537.1" FT /translation="MGQKIHPTGFRLAVTRNWTSRWFADDKAFGTMLAEDIRVREYLKK FT KLKSASVGRVIIERPAKNARITVYSARPGVVIGKRGEDIENLKADLQRLMGVPVHVNIE FT EIRKPETDAQLIADSISQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIA FT RTEWYREGRVPLHTLKANIDYGTSEAHTTYGVIGIKVWVYKGDMLANGELPPEAATPRE FT EERRPRRAPRGDRPDGARTGRPGGRGRGPRKADAAPAPEGE" FT misc_feature 37297..37482 FT /note="HMMPfam hit to PF00417, DE Ribosomal protein S3, FT N-terminal domain, score 1.8e-25" FT misc_feature 37489..37632 FT /note="HMMPfam hit to PF00013, DE KH domain, score 5.5e-07" FT misc_feature 37651..37902 FT /note="HMMPfam hit to PF00189, DE Ribosomal protein S3, FT C-terminal domain, score 2e-51" FT misc_feature 37783..37887 FT /note="PS00548 Ribosomal protein S3 signature." FT CDS 38091..38507 FT /transl_table=11 FT /gene="rplP" FT /locus_tag="BB0036" FT /product="50S ribosomal protein L16" FT /note="ortholog of Bordetella pertussis (BX470248) BP3620" FT /protein_id="CAE30538.1" FT /translation="MLQPSRRKYRKEQKGRNTGLASRGTHVSFGEFGLKATGRGRLTAR FT QIEAARRAINRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYWVAEIQPGKVLY FT EMEGVSEELAREAFRLAAAKLPISTTFVARHIGA" FT misc_feature 38091..38486 FT /note="HMMPfam hit to PF00252, DE Ribosomal protein L16, FT score 7.7e-88" FT misc_feature 38265..38300 FT /note="PS00586 Ribosomal protein L16 signature 1." FT misc_feature 38334..38369 FT /note="PS00701 Ribosomal protein L16 signature 2." FT CDS 38518..38709 FT /transl_table=11 FT /gene="rpmC" FT /locus_tag="BB0037" FT /product="50S ribosomal protein L29" FT /note="ortholog of Bordetella pertussis (BX470248) BP3621" FT /protein_id="CAE30539.1" FT /translation="MKASELRSKDAAELGKELESLLKAQFGLRMQKATQQLANTSQLRN FT VRRDIARVRTLLTEKAGK" FT misc_feature 38524..38703 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00831, DE Ribosomal L29 protein, FT score 1.3e-14" FT misc_feature 38632..38676 FT /note="PS00579 Ribosomal protein L29 signature." FT CDS 38711..38992 FT /transl_table=11 FT /gene="rpsQ" FT /locus_tag="BB0038" FT /product="30S ribosomal protein S17" FT /note="ortholog of Bordetella pertussis (BX470248) BP3622" FT /protein_id="CAE30540.1" FT /translation="MSETQNTQVAKRQRTLVGKVVSNKMDKTVVVLVERRVKHPIFGKI FT IMRSAKYKAHDESNQYNEGDTVEIAEGRPISRSKAWRVVRLVEAARVI" FT misc_feature 38762..38968 FT /note="HMMPfam hit to PF00366, DE Ribosomal protein S17, FT score 7.3e-32" FT misc_feature 38900..38938 FT /note="PS00056 Ribosomal protein S17 signature." FT CDS complement(39159..40022) FT /transl_table=11 FT /locus_tag="BB0039" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3623" FT /protein_id="CAE30541.1" FT /translation="MSCQHLPASHYARCAGRELHYVEWGRRDAPPLVMWHGLARTGRDF FT DDLAQALADRYRIICPDTIGRGLSQWSSRPAQEYCLDFYATLACELLDRLGLSGVRWIG FT TSMGGAIGMHGAATALRGRITHLVLNDIGPTLPAPAIERILAYAGAPPAFDTVGELEAW FT LRSAYRPYGWLSDAQWRRMAETSIRRLPDGRVTTHYDPAIVGQFRHHPTDYERWSEYDS FT LRIPVLLLRGADSDLLLPEVAHAMTQRGPRARRIDFPDCGHAPALNVTAQIEAIADFLA FT APAALA" FT misc_feature complement(39183..39857) FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 2.5e-07" FT CDS complement(40109..41536) FT /transl_table=11 FT /locus_tag="BB0040" FT /product="putative aldehyde dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3624" FT /protein_id="CAE30542.1" FT /translation="MYEQLALYIDGEFLTGDGRRTQDVVNPATLEVLGQLPHASEADLD FT RALAAAQRAFETWKRTSPMERAAILRKVGQLSRDRAQEIGRNMTLDQGKPLAEAVGEVA FT SCSEHADWHAEECRRIYGRVIPPRNPDVRQFVVREPIGVCAAFTPWNFPYNQAIRKIAA FT ALGAGCTVVLKGPEDSPSAVMAIARMFHEAGLPKGCLNIVWGEPAKISDYLIRSPIVRK FT VSFTGSVPVGKQLAALAGAHMKRVTMELGGHSPVLVFDDADVDRAAEMLARFKVRNAGQ FT VCVSPTRFYVQNGAYEQFLARFTEVLKNIKVGDGLEKGTDMGPLAHERRVPAMSTFVDD FT ALKHGGKVVLGGDAPDRKGYFFSPTVVTELPDNAMLMTEEPFGPLAPVVRFTDTDEVLR FT RANSLPFGLSSYVFTNSLKTATKVSNALEAGMVNINHFGSALAETPFGGIKDSGIGSEG FT GLETFDGYLVTKYITHI" FT misc_feature complement(40115..41503) FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 3.7e-175" FT CDS 42435..42803 FT /transl_table=11 FT /gene="rplN" FT /locus_tag="BB0041" FT /product="50S ribosomal protein L14" FT /note="ortholog of Bordetella pertussis (BX470248) BP3626" FT /protein_id="CAE30543.1" FT /translation="MIQMQTTLDVADNTGARAVMCIKVLGGSKRRYAGIGDIIKVSVKD FT AAPRGRVKKGEIYNAVVVRTAKGVRRKDGSLIRFGGNAAVLLNAKLEPIGTRIFGPVTR FT ELRTERFMKIVSLAPEVL" FT misc_feature 42435..42797 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00238, DE Ribosomal protein FT L14p/L23e, score 4.9e-72" FT misc_feature 42612..42692 FT /note="PS00049 Ribosomal protein L14 signature." FT CDS 42814..43134 FT /transl_table=11 FT /gene="rplX" FT /locus_tag="BB0042" FT /product="50S ribosomal protein L24" FT /note="ortholog of Bordetella pertussis (BX470248) BP3627" FT /protein_id="CAE30544.1" FT /translation="MNNIRKGDEVIVLTGRDKKRRGTVLARVDADHVLVEGVNVVKKHV FT KANPMANNPGGIVEKTMPIHVSNVALFNPATGKGDRVGVQEVDGRKVRVFRSNGAVVGA FT KA" FT misc_feature 42823..42921 FT /note="HMMPfam hit to PF00467, DE KOW motif, score 0.00028" FT CDS 43147..43686 FT /transl_table=11 FT /gene="rplE" FT /locus_tag="BB0043" FT /product="50S ribosomal protein L5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3628" FT /protein_id="CAE30545.1" FT /translation="MSRLQEFYKSKVVADLQAKFGYKCVMEVPRITKITLNMGVSEAVA FT DKKVIEHAVSDLTKISGQKPVVTKTRKAIAGFKIRENYPIGCMVTLRGQRMYEFLDRLV FT AVALPRVRDFRGISGRAFDGRGNYNIGVKEQIIFPEIEYDKIDALRGLNISITTTAKTD FT DEAKALLTAFSFPFRN" FT misc_feature 43219..43386 FT /note="HMMPfam hit to PF00281, DE Ribosomal protein L5, FT score 8.5e-25" FT misc_feature 43315..43365 FT /note="PS00358 Ribosomal protein L5 signature." FT misc_feature 43396..43680 FT /note="HMMPfam hit to PF00673, DE ribosomal L5P family FT C-terminus, score 4.2e-51" FT CDS 43699..44004 FT /transl_table=11 FT /gene="rpsN" FT /locus_tag="BB0044" FT /product="30S ribosomal protein S14" FT /note="ortholog of Bordetella pertussis (BX470248) BP3629" FT /protein_id="CAE30546.1" FT /translation="MAKLSLINRDIKRAKLADKYAAKRAELKAIIDDQSKTDEERYQAR FT LKLQQLPRNANPTRQRNRCVVTGRPRGVFRKFGLTRHKLREMAMKGEVPGMTKASW" FT misc_feature 43699..43998 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00253, DE Ribosomal protein FT S14p/S29e, score 3.2e-51" FT CDS 44015..44410 FT /transl_table=11 FT /gene="rpsH" FT /locus_tag="BB0045" FT /product="30S ribosomal protein S8" FT /note="ortholog of Bordetella pertussis (BX470248) BP3630" FT /protein_id="CAE30547.1" FT /translation="MSMSDPIADMLTRIRNAQQVDKTTVTMPASKLKVAIATVLKDEGY FT IDGYSVKGTQAKPELEITLKYYAGRPVIERIERVSRPGLRIYKGRTSIPQVMNGLGVAI FT VSTSRGVMTDRKARANGVGGEVLCYVA" FT misc_feature 44027..44404 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00410, DE Ribosomal protein S8, FT score 7.9e-63" FT misc_feature 44315..44368 FT /note="PS00053 Ribosomal protein S8 signature." FT misc_feature 44396..44404 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="PS00294 Prenyl group binding site (CAAX box)." FT CDS 44421..44954 FT /transl_table=11 FT /gene="rplF" FT /locus_tag="BB0046" FT /product="50S ribosomal protein L6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3631" FT /protein_id="CAE30548.1" FT /translation="MSRIAKYPVELPKGVEASIQPDQITVKGPLGTLVQSLTGDVNVAQ FT EDGKLTFVVANDSRHANAMSGTLRALVANMVTGVSKGFERKLNLVGVGYRAQIQGDAVK FT LQLGFSHDVVHQLPAGVKAECPTQTEIVIKGPNKQVVGQVAAEIRKYREPEPYKGKGVR FT YADERVVIKETKKK" FT misc_feature 44451..44666 FT /note="HMMPfam hit to PF00347, DE Ribosomal protein L6, FT score 1.7e-21" FT misc_feature 44688..44915 FT /note="HMMPfam hit to PF00347, DE Ribosomal protein L6, FT score 7.4e-28" FT misc_feature 44880..44906 FT /note="PS00525 Ribosomal protein L6 signature 1." FT CDS 44976..45338 FT /transl_table=11 FT /gene="rplR" FT /locus_tag="BB0047" FT /product="50S ribosomal protein L18" FT /note="ortholog of Bordetella pertussis (BX470248) BP3632" FT /protein_id="CAE30549.1" FT /translation="MDKKVSRLRRAVPTRRKIAQLRVHRLSVFRSNLHIYANIISPEGD FT RVLVSASTLEAEVRAQLGGAGKGGNATAAALVGKRVAEKAKAAGIELVAFDRSGFRYHG FT RVKALAEAAREAGLKF" FT misc_feature 44976..45332 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00861, DE Ribosomal L18p/L5e FT family, score 2.7e-39" FT CDS 45354..45878 FT /transl_table=11 FT /gene="rpsE" FT /locus_tag="BB0048" FT /product="30S ribosomal protein S5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3633" FT /protein_id="CAE30550.1" FT /translation="MATKVQGKHAAEKENDDGLREKMIAVNRVSKVVKGGRTMSFAALS FT VVGDGDGRIGMGKGKAREVPVSVQKAMEQARRGMFKVALKNGTLHHTVVGKHGASTVLI FT SPAAEGTGVIAGGPMRAIFEVMGVRNVVAKSLGSSNPYNLVRATLNGLRASLTPAEVAA FT KRGKSVEEILG" FT misc_feature 45405..45605 FT /note="HMMPfam hit to PF00333, DE Ribosomal protein S5, FT N-terminal domain, score 1.1e-25" FT misc_feature 45630..45851 FT /note="HMMPfam hit to PF03719, DE Ribosomal protein S5, FT C-terminal domain, score 2.9e-26" FT CDS 45882..46067 FT /transl_table=11 FT /gene="rpmD" FT /locus_tag="BB0049" FT /product="50S ribosomal protein L30" FT /note="ortholog of Bordetella pertussis (BX470248) BP3634" FT /protein_id="CAE30551.1" FT /translation="MAQKQIKVTLVRSVIGTKQSHRDTIRGLGLRRINSSRVLVDTPEV FT RGMIHKVGYLVSVSEA" FT misc_feature 45891..46049 FT /note="HMMPfam hit to PF00327, DE Ribosomal protein FT L30p/L7e, score 3.1e-15" FT CDS 46077..46517 FT /transl_table=11 FT /gene="rplO" FT /locus_tag="BB0050" FT /product="50S ribosomal protein L15" FT /note="ortholog of Bordetella pertussis (BX470248) BP3635" FT /protein_id="CAE30552.1" FT /translation="MSDIQLNTLKPAEGSKHAKRRVGRGIGSGLGKTAGRGHKGQKSRS FT GGFHKVGFEGGQMPLQRRLPKRGFTPLGQHLYAEVRLSELQLMEAEEIDVQALKAAGVV FT GQSVRYAKVIKSGELSRKVVLRGITATAGARAAIEAAGGSLA" FT misc_feature 46086..46388 FT /note="HMMPfam hit to PF01305, DE Ribosomal protein L15 FT amino terminal region, score 1.5e-48" FT misc_feature 46410..46505 FT /note="HMMPfam hit to PF00256, DE Ribosomal protein L15, FT score 1e-05" FT CDS 46532..47857 FT /transl_table=11 FT /gene="secY" FT /gene_synonym="prlA" FT /locus_tag="BB0051" FT /product="preprotein translocase SecY subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP3636" FT /protein_id="CAE30553.1" FT /translation="MAKAQALGKTGARYGDLKRRLVFLVLALVVYRLGTHIPVPGINPD FT ALADLFRQHEGGILGLFNMFSGGALSRFSIFALGIMPYISASIIMQLMSVVVPSLEALK FT KEGEAGRRKITQYTRYGTVVLALVQAVGISVALESQPGLVIDPGMLFRFTTVVTLVTGT FT MFVMWLGEQITERGLGNGISILIFAGIVAGLPSALAGLLDLVRTNSMSVLSALFIVALV FT VLVTAFVVFVERGQRKITVNYAKRQVGNKVYGGQSSHLPLKLNMAGVIPPIFASSIILF FT PATITSWFSSGERMAWLRDLAAALEPRQPLYITLYSVAIIFFCFFYTALVFNSRETADN FT LKKSGAFVPGIRPGEQTARYIDKILMRLTLAGAIYITLVCLLPEFLVMRWNVPFYFGGT FT SLLIIVVVTMDFMAQVQAYMMSHQYDSLLKKANFKGSGLPMR" FT misc_feature join(46592..46660,46754..46822,46880..46948,46976..47044, FT 47063..47131,47159..47227,47336..47404,47462..47530, FT 47621..47689,47702..47770) FT /note="10 probable transmembrane helices predicted for FT BB0051 by TMHMM2.0 at aa 21-43, 75-97, 117-139, 149-171, FT 178-200, 210-232, 269-291, 311-333, 364-386 and 391-413" FT misc_feature 46751..46810 FT /note="PS00755 Protein secY signature 1." FT misc_feature 46751..47773 FT /note="HMMPfam hit to PF00344, DE eubacterial secY protein, FT score 1.4e-179" FT misc_feature 47033..47089 FT /note="PS00756 Protein secY signature 2." FT misc_feature 47057..47113 FT /note="PS00095 C-5 cytosine-specific DNA methylases FT C-terminal signature." FT CDS 47867..48085 FT /transl_table=11 FT /gene="infA" FT /locus_tag="BB0052" FT /product="translation initiation factor IF-1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3637" FT /protein_id="CAE30554.1" FT /translation="MSKDDVIQMQGEVLENLPNATFRVKLENGHVVLGHISGKMRMHYI FT RILPGDKVTVELTPYDLTRARIVFRSK" FT misc_feature 47870..48079 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00575, DE S1 RNA binding domain, FT score 3.4e-07" FT misc_feature 48041..48070 FT /note="PS00215 Mitochondrial energy transfer proteins FT signature." FT CDS 48120..48233 FT /transl_table=11 FT /gene="rpmJ" FT /locus_tag="BB0053" FT /product="50S ribosomal protein l36" FT /note="ortholog of Bordetella pertussis (BX470248) BP3638" FT /protein_id="CAE30555.1" FT /translation="MKVMASVKRICRNCKVIKRHGVVRVICTDPRHKQRQG" FT misc_feature 48120..48227 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00444, DE Ribosomal protein L36, FT score 8.7e-16" FT misc_feature 48150..48227 FT /note="PS00828 Ribosomal protein L36 signature." FT CDS 48275..48640 FT /transl_table=11 FT /gene="rpsM" FT /locus_tag="BB0054" FT /product="30S ribosomal protein S13" FT /note="ortholog of Bordetella pertussis (BX470248) BP3639" FT /protein_id="CAE30556.1" FT /translation="MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAAGVPVTKKV FT KDLTDAELERIREHIGVFAVEGDLRREVQLSIKRLIDLGTYRGMRHKRGLPVRGQRTRT FT NARTRKGPRRAAASLKK" FT misc_feature 48281..48598 FT /note="HMMPfam hit to PF00416, DE Ribosomal protein FT S13/S18, score 2.4e-50" FT misc_feature 48533..48574 FT /note="PS00646 Ribosomal protein S13 signature." FT CDS 48656..49057 FT /transl_table=11 FT /gene="rpsK" FT /locus_tag="BB0055" FT /product="30S ribosomal protein S11" FT /note="ortholog of Bordetella pertussis (BX470248) BP3640" FT /protein_id="CAE30557.1" FT /translation="MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNA FT LSWATSGGAGFKGSRKSTPFAAQVAAETAGRVAMEYGIKTLEVRIKGPGPGRESSVRAL FT NALGIKISSIADITPVPHNGCRPPKRRRI" FT misc_feature 48722..49051 FT /note="HMMPfam hit to PF00411, DE Ribosomal protein S11, FT score 9.4e-68" FT misc_feature 48956..49024 FT /note="PS00054 Ribosomal protein S11 signature." FT CDS 49069..49692 FT /transl_table=11 FT /gene="rpsD" FT /gene_synonym="ramA" FT /locus_tag="BB0056" FT /product="30S ribosomal protein S4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3641" FT /protein_id="CAE30558.1" FT /translation="MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTS FT GARTSDYGLQLREKQKLKRMYGVLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVY FT RMGFGSTRAEARQLVSHRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESLDLA FT ASIGLPQWVEVDASKMTGTFKSAPDRADVARDVNESMVVELYSR" FT misc_feature 49069..49356 FT /note="HMMPfam hit to PF00163, DE Ribosomal protein S4/S9 FT N-terminal domain, score 5.2e-33" FT misc_feature 49351..49425 FT /note="PS00632 Ribosomal protein S4 signature." FT misc_feature 49357..49500 FT /note="HMMPfam hit to PF01479, DE S4 domain, score 4.2e-18" FT CDS 49907..50893 FT /transl_table=11 FT /gene="rpoA" FT /locus_tag="BB0057" FT /product="DNA-directed RNA polymerase alpha chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3642" FT /protein_id="CAE30559.1" FT /translation="MSTQGFLKPRSIEVEPVGAHHAKIVMEPFERGYGHTLGNALRRIL FT LSSMTGYAPTEVQMTGVVHEYSTIAGVREDVVDILLNLKGVVFKLHNRDEVTLVLRKNG FT AGAVVASDIELPHDVEIINPDHLICNLTDAGKIEMQVKVEKGRGYVPGNVRALSEDRTH FT TIGRIVLDASFSPVRRVSYAVESARVEQRTDLDKLVLDIETNGVISPEEAVRQAARILM FT DQISVFAALEGAGDAYEPPVRGTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLI FT QRTENELLKTPNLGRKSLNEIKEVLAARGLTLGMKLENWPPLGLERP" FT misc_feature 49967..50581 FT /note="HMMPfam hit to PF01000, DE Bacterial RNA polymerase, FT alpha chain, N terminal domain, score 6.5e-104" FT misc_feature 50627..50830 FT /note="HMMPfam hit to PF03118, DE Bacterial RNA polymerase, FT alpha chain C terminal domain, score 1.9e-26" FT CDS 51052..51447 FT /transl_table=11 FT /locus_tag="BB0058" FT /product="50S ribosomal protein L17" FT /note="ortholog of Bordetella pertussis (BX470248) BP3643" FT /protein_id="CAE30560.1" FT /translation="MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELR FT RVIEPLITLGKEPTLANKRLAFARLRDRDAVVKLFAEIGPRYANRNGGYTRVLKMGFRQ FT GDNAPMAFMELVDRPEVDASEADSDAE" FT misc_feature 51109..51399 FT /note="HMMPfam hit to PF01196, DE Ribosomal protein L17, FT score 4.3e-57" FT misc_feature 51151..51219 FT /note="PS01167 Ribosomal protein L17 signature." FT CDS complement(51576..52013) FT /transl_table=11 FT /locus_tag="BB0059" FT /product="histidine triad protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3644" FT /protein_id="CAE30561.1" FT /translation="MSHDCLFCRISREEIPAHVIHQDSRLLAFLDIHPVRPGHVLIIPR FT QHYPYFEDMPADLAGHILNLGQRLARHMKRLYSVERVGFAFTGIHVAHAHAHLIPMHHP FT QDVTSTQYIEQKDLTFVMPPQSPPEQLASVAQDLRAALTKA" FT misc_feature complement(51690..52010) FT /note="HMMPfam hit to PF01230, DE HIT family, score FT 2.5e-13" FT CDS 52120..52461 FT /transl_table=11 FT /gene="cutA" FT /gene_synonym="cycY" FT /gene_synonym="cutA1" FT /locus_tag="BB0060" FT /product="putative periplasmic divalent cation tolerance FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3645" FT /protein_id="CAE30562.1" FT /translation="MLRDDDVVLVISNAPDMLLAKRMAHVLVEDGLAACVNLGAPVLSV FT YRWKGEVEGADEIPLWIKTTYARHQAVVQTLAQLHPYEVPEIIVLPVIGGIASYLDWVR FT EQSSGVDSQ" FT misc_feature 52138..52443 FT /note="HMMPfam hit to PF03091, DE CutA1 divalent ion FT tolerance protein, score 1e-26" FT CDS 52472..54409 FT /transl_table=11 FT /locus_tag="BB0061" FT /product="thiol:disulfide interchange protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3646" FT /protein_id="CAE30563.1" FT /translation="MMQYGHASATGHGASATGRAAAAGRWLAWMLALALVLFARPAAAL FT TEDDFLPPEQAFVFSAAMADPATLVLNYRIAPEYYMYRERFGLSASPAQAVTLGEAAYP FT QGKVKYDPTFDKDMEVFYGTVAVRVPLSQGNGQPFTLTVTSQGCADAGLCYPPMDNTVQ FT LMPVAGGYALAAGTASAPQGGGTFDSLLEAGDTRLADFIGGGGWLKTAGVFLLLGMLLA FT FTPCVLPMVPILSSIVLGGAQAQRPSRWRGLGLAAAYVFGMSVVYTALGVAAGLSGAGL FT AAWLQTPWILSLFAILLAVLALAMFGAFTFQMPAGLQARLSERSNRIPGGRVTGALVMG FT ALSALIVGPCVAAPLAGALLYISQTGDVILGGAALFAMAWGMGIPLLLVGASAGTLLPR FT TGPWMESVKRVFGMLLLGTAWWMLIPVVPTWVQMLGWSFLAVVGAVMLRAFDALPAGSG FT APRMFAKGLGLLLALAGAAWLIGALSGGRDVLAPLSHLAARAPAGGAVAAAGPAAVDKT FT RFVRVRSNAELDALLARSTQPVMLDFYADWCVSCREMEHFTFSDPTVAARMSQMLLVQA FT DVTKNNADDRALLKRFRLFGPPGIMFFEPGGKLIEDIRVVGFQDARRFAGVLEQVADRS FT GAPGPAQAGS" FT misc_feature join(52532..52600,53120..53188,53225..53293,53336..53404, FT 53477..53545,53573..53641,53699..53758,53768..53821, FT 53858..53926) FT /note="9 probable transmembrane helices predicted for FT BB0061 by TMHMM2.0 at aa 21-43, 217-239, 252-274, 289-311, FT 336-358, 368-390, 410-429, 433-450 and 463-485" FT misc_feature 53111..53743 FT /note="HMMPfam hit to PF02683, DE Cytochrome C biogenesis FT protein transmembrane region, score 2.9e-06" FT misc_feature 54089..54145 FT /note="PS00194 Thioredoxin family active site." FT CDS 54450..55487 FT /transl_table=11 FT /locus_tag="BB0062" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3647" FT /protein_id="CAE30564.1" FT /translation="MGERLVRCCPYQPRRRDPVASHPSSHYVSTAIASPANVGRVYLQL FT LLVMAAWGVNLVAVKYLTFHMDVQVVAAVRIVVAFVAVSAILLWRLHGVPRLSLRQFGW FT LACAGLLVVYAHQILLVNALRLTPAANATLIMATSPLFSVVLAAFFYRERLTASRIGGA FT ALGLGGVALVVAGGDGVLASVGRGDVLALCAVIVFVIGGLIIQRVSRALDPLTILWYMY FT LVGAVTLSAHAAFSPATYLASSWTLEPWPWLVVLFSSVIASGVSNLLWNAGIARLGMSR FT AAMFVNWLPIFGLLAAAVFLGERITALHFAGLACVLSGTWLGLRTAPAPAAGQADARPA FT RARRA" FT misc_feature join(54570..54638,54651..54719,54753..54821,54834..54902, FT 54927..54995,55008..55076,55095..55154,55197..55265, FT 55299..55352,55362..55421) FT /note="10 probable transmembrane helices predicted for FT BB0062 by TMHMM2.0 at aa 41-63, 68-90, 102-124, 129-151, FT 160-182, 187-209, 216-235, 250-272, 284-301 and 305-324" FT misc_feature 54597..54974 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 8.9e-21" FT misc_feature 55035..55424 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 6.4e-19" FT misc_feature 55362..55394 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(55484..56500) FT /transl_table=11 FT /gene="hemB" FT /locus_tag="BB0063" FT /product="putative delta-aminolevulinic acid dehydratase" FT /EC_number="4.2.1.24" FT /note="ortholog of Bordetella pertussis (BX470248) BP3648" FT /protein_id="CAE30565.1" FT /translation="MKPQIISAAFPVSRPRRLRRDDFTRRLVRENTLTANDLIYPVFVT FT EGKGIQQAVPSLPGVVRYSLDTLLPVAEQCVKLGIPVLSLFPAIEPALKTPDGIEAANP FT EGLIPRVVGELKKRFPELGVLTDVALDPYTSHGQDGVIDPAGYVLNEPTVEILIKQALV FT QAAAGVDIVAPSDMMDGRIGAIRQALEDQQHIHTRIMAYSAKYASAFYGPFRDAVGSAS FT NLGKSDKMAYQMDPGNIDEALREVAADLQEGADMVMVKPGMPYLDVVRRVKDAFRVPTF FT AYQVSGEYAMIKAAAANGWLDHDKVMMEALLGFKRAGADGVLTYFALEAATLLQQQR" FT misc_feature complement(55496..56488) FT /note="HMMPfam hit to PF00490, DE Delta-aminolevulinic acid FT dehydratase, score 7.5e-194" FT misc_feature complement(55706..55744) FT /note="PS00169 Delta-aminolevulinic acid dehydratase active FT site." FT CDS complement(56497..57120) FT /transl_table=11 FT /locus_tag="BB0064" FT /product="putative GTP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3649" FT /protein_id="CAE30566.1" FT /translation="MSLLHRASFYISAARLDQLPPAGAPEVCFVGRSNAGKSSAINVLC FT NQRRLAFSSKTPGRTRLINMFGLPDPLAPGEQLGFLVDLPGYGYASVAHREKEKWADIL FT GGYLRDRASLAGIVLLIDIRRGVTDLDRRLTNFIAPTGRPVLALLTKADKLPYGQRMRT FT VFAVRKDLADIGALHMVPFSSTERIGLEEAGAHIENWISPKVVP" FT misc_feature complement(57007..57030) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 57344..58045 FT /transl_table=11 FT /locus_tag="BB0065" FT /product="putative cytochrome C precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3650" FT /protein_id="CAE30567.1" FT /translation="MKRVLSRMLVASGLVLGASVHSMSFAADGAAGPAKPDAAKGAQLY FT DQGDASRGVIACASCHGAAGSSTIPANPNLAAQPHEYLVKQLTEFKVKEGEKLPLRMGP FT GGNPTPMTAMAQPLTAQDMQNVALYLSQQPLKEPATAGHENLVELGQKIWRGGLADRNV FT PACAACHGATGAGIPGQYPRLSGQFSSYIEEQLKLFRSGERGNSVPMHDIADRMSDADI FT KAVADYAAGLR" FT misc_feature 57344..57421 FT /note="Signal peptide predicted for BB0065 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.914 between residues 26 and 27" FT misc_feature 57449..57745 FT /note="HMMPfam hit to PF00034, DE Cytochrome c, score FT 2.3e-06" FT misc_feature 57512..57529 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 57809..58039 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00034, DE Cytochrome c, score 0.18" FT misc_feature 57839..57856 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 58164..60260 FT /transl_table=11 FT /locus_tag="BB0066" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3651" FT /protein_id="CAE30568.1" FT /translation="MNATSTAPSSRHTLRSLAGDVFELLGSMRFAVSLLMFICIASIVG FT TVLAQNRPSNVYVDQFGPFWFEVFDKFSIWHVYNSWWFLLIMTFLVVSTSVCLIRNTPK FT MLREARSFREHVRASSLRAFPHRVQTEVAQPVSETAQGVTGLLGQFGYAVRERRDGDGI FT MLAAKKGSANRLGYIFAHSAMVIICIGGLLDSEAPVRLQVLFDGKQPIAINGEMARADI FT PDSALLSVNNPSYRANLWVPEGSNASLATIAVNDRSLVQPLPFSLRLKKFTVDYYSTGM FT PSRFLSLVEVTDPETGEMFDQTIEVNEPLRYKGVTVYQSSFDDGGSSVSLTGYPLVGAG FT DTPFKVDGVVGQTSEIGARIGDQPKSMKIEFTALRVINVEDFSGGQPGAQNLSLREHVA FT SVAGSAAGKKNENLRNVGPRIDYKLIDDAGQAHEFQNYMLPVVLDGVPVFLSAVRNNPA FT DDFQYLRIPADDQGSLAEFMRLRAALADPAARQEAARRFAERNAPSGTDRQPLETAAQR FT ALATFAEGGLQAIADFLQANTAPDDLERAAGIVVRLVGASVAELRDIARARAGLPALPQ FT SGPQADEAAQWSRVAVAALSDLAFYPAPVMFSLTDFQERQGSVFQVARTPGKNAVYLGC FT VLLILGIFAMFYIRDRRVWVWVKPAADGAGSSIEAAMTSQKRTLDFNQEFDRLREALLR FT QSKP" FT misc_feature join(58251..58310,58392..58460,58686..58742,60051..60107) FT /note="4 probable transmembrane helices predicted for FT BB0066 by TMHMM2.0 at aa 30-49, 77-99, 175-193 and 630-648" FT CDS 60270..61604 FT /transl_table=11 FT /locus_tag="BB0067" FT /product="putative cytochrome c asssembly protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3652" FT /protein_id="CAE30569.1" FT /translation="MSTTTSNSAAAWTSGFSPTGDGRAQRGRPDWTDIAFFLLLAAGAG FT FALTRFSGAMDYYEKLILCGTVPALAWLGWLWRPLRHLMIACALAAGLALLLYQNDLAR FT AEQVFFLKYLLSSQSAILWMSALFVLAMLCYWIGILSPTAAWLGTALTWGAVFAGTTGL FT LVRWREGHLMGPDLGHIPVSNLYEVFVLFALITALFYLYYERKYATRALGGFVLLVITS FT ATIFLLWYSFTRDAGQIQPLVPALKSWWMKLHVPANFIGYGTFSLAAMVGFAYLVKQHG FT QTTSWLKLAPLFVLGVALCVEPIVFRTEGLSATWMIYCGAGVVIVGGILLARARIAQAL FT PSLEVLDDIMYRAIAIGFAFFTVATVLGALWAADAWGAYWQWDPKETWALIVWLNYAAW FT LHMRLIKGLRGTMAAYWSLVGLLITGFAFLGVNMFLSGLHSYGEL" FT misc_feature join(60369..60428,60438..60497,60516..60569,60627..60686, FT 60705..60764,60807..60875,60900..60968,61032..61100, FT 61119..61187,61200..61268,61329..61388,61431..61484, FT 61503..61571) FT /note="13 probable transmembrane helices predicted for FT BB0067 by TMHMM2.0 at aa 34-53, 57-76, 83-100, 120-139, FT 146-165, 180-202, 211-233, 255-277, 284-306, 311-333, FT 354-373, 388-405 and 412-434" FT misc_feature 60849..61526 FT /note="HMMPfam hit to PF01578, DE Cytochrome C assembly FT protein, score 8.1e-13" FT CDS complement(61675..62964) FT /transl_table=11 FT /gene="lysA" FT /locus_tag="BB0068" FT /product="diaminopimelate decarboxylase" FT /EC_number="4.1.1.20" FT /note="ortholog of Bordetella pertussis (BX470248) BP3653" FT /protein_id="CAE30570.1" FT /translation="MTAVSVQPDLAGSPHFRYQNGVLHAEDVPLDSLAAQLGTPLYVYS FT RAALRSAWETYRDAIGERPVLVCFGMKANSNLAVLKEFARLGAGFDIVSGGELARVLAV FT GGDPAKVVFSGVGKQAWEMRAALEADVKCFNVESEAELERLSDVAVSMGRRARVSLRVN FT PDVDAQTHPYISTGLKENKFGIAIESAPAAYRLAARLPGVEVVGVDCHIGSQLTDISPY FT FDALEKLLDLIEQLAENGIAIKHLDLGGGLGIRYTDEIPPSPKALLDRVFERINARGLG FT HLHIVLEPGRSLVGNAGVLLTTVQYLKHAEARNFAIVDAAMNDLLRPALYEAYHGVQPV FT TPRADKRIEYDVVGPVCESADWLARGRALAIQAGDVLAVESAGAYSMVMASNYNTRVRA FT AEVMVDGNRHYIVRQRETLESLYQGESTLP" FT misc_feature complement(61750..62070) FT /note="HMMPfam hit to PF00278, DE Pyridoxal-dependent FT decarboxylase, C-terminal sheet domain, score 2.3e-38" FT misc_feature complement(62077..62832) FT /note="HMMPfam hit to PF02784, DE Pyridoxal-dependent FT decarboxylase, pyridoxal binding domain, score 6e-93" FT misc_feature complement(62206..62247) FT /note="PS00879 Orn/DAP/Arg decarboxylases family 2 FT signature 2." FT CDS 63178..63507 FT /transl_table=11 FT /gene="cyaY" FT /locus_tag="BB0069" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3654" FT /protein_id="CAE30571.1" FT /translation="MTETEFLALVDQVLDSIESQADDWAAGLDVDIEATRSGNVLTLVF FT EDGTQVVVNAQAAMQELWVAARSGGFHYRYDGQHWNDTRGGPRLPDALSQICSEAAGVP FT VSVRL" FT misc_feature 63178..63501 FT /note="HMMPfam hit to PF01491, DE Frataxin-like domain, FT score 2.3e-25" FT CDS complement(63564..66008) FT /transl_table=11 FT /locus_tag="BB0070" FT /product="penicillin-binding protein 1A" FT /EC_number="2.4.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3655" FT /protein_id="CAE30572.1" FT /translation="MSKRQNSTKQDKPAKSGSAILRFFLKAGIFFGGLALCGVLLAGMA FT LALAWPNLPDLHAMTDYRPRVPLRVYTADRVLIGEFGEERRNVLRFNEIPDVMKSAVLA FT AEDDRFYQHGGIDWMGVIRAGLTNLISMSKSQGASTITMQVARNFYLSSEKTYSRKFYE FT LLLTFKIESQLTKDQILELYMNQIYLGHRAYGFAAASRTYFGKPLSQVTPSEAAMLAGI FT PKAPSRFNPISNRPRAELRQRYVLGRMYSLGYLTEPEYKEAMAQPIVIKSAEGTPAGGY FT AIHGEYVAELARQLLYNVYQDNLYSRGINIYTTVQSKDQESAYRAVRDGVLEYTRRAPY FT PGPEEQLDMPAGVENDPQALDEFLDGVFDKFSDSGDLLTAVVLSASPTEIKLVRSSREV FT ISITDKKALGVVARALTDKAKPEMRLKRGSVVYIHKYNDNWEVINMPAVQAAFVALSPQ FT DGAIRAMVGGFDFYRGNFNRVTQAWRQPGSNIKPFIYAASLERGLTPATQISDQPFELS FT AAQTGSKAWHPKNYGNQYEPMLTMRQGLYKSKNMVSIRILQAIGPQYAQDYLTRFGFDK FT ARQPAVLPLALGAGSVTPLQLAGAYAVFANGGYRITPYLIDRVTDSSGKVLMQSRPVIA FT GDAAARAIDARTAFVMDDMLRGVATSGTAARARATLKRSDVAGKTGTTNESVDAWFSGY FT TPSLVATAWLGFDQPKSLGSRETGGGVAMPIWLDYMKDALKGVPEEKQRPRPDGLLVEN FT GELYFSEFPPGQAVARLGLPQAGDALGDFLNGLTGGNDNSIRVAPGVGTQGSQPWSQNI FT PF" FT misc_feature complement(63825..64796) FT /note="HMMPfam hit to PF00905, DE Penicillin binding FT protein transpeptidase domain, score 1.6e-28" FT misc_feature complement(63933..63998) FT /note="Predicted helix-turn-helix motif with score FT 1172.000, SD 3.18 at aa 671-692, sequence FT LKRSDVAGKTGTTNESVDAWFS" FT misc_feature complement(65301..65807) FT /note="HMMPfam hit to PF00912, DE Transglycosylase, score FT 5e-89" FT misc_feature complement(65868..66008) FT /note="Signal peptide predicted for BB0070 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.685 between residues 47 and 48" FT CDS 66122..66757 FT /transl_table=11 FT /gene="aroK" FT /locus_tag="BB0071" FT /product="shikimate kinase I" FT /EC_number="2.7.1.71" FT /note="ortholog of Bordetella pertussis (BX470248) BP3656" FT /protein_id="CAE30573.1" FT /translation="MNASANLCAASDNDPQPGDQEAAHPVACAGDEPAAFLPHDLPIFL FT VGMMGAGKTTIGRGLARALRREFIDLDHELEARCGVRVPVIFEIEGEAGFRRREAAALQ FT ECTQRRQIILATGGGAVLAAENRQALRERGIVIYLRASVEELFRRTSRDRNRPLLATAD FT PRATLRELMVAREPLYNEVADLVIDTGSMPIATLVKSLLPKLQAYEKK" FT misc_feature 66242..66739 FT /note="HMMPfam hit to PF01202, DE Shikimate kinase, score FT 1.1e-59" FT misc_feature 66260..66283 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 66407..66484 FT /note="PS01128 Shikimate kinase signature." FT CDS 66757..67833 FT /transl_table=11 FT /gene="aroB" FT /locus_tag="BB0072" FT /product="3-dehydroquinate synthase" FT /EC_number="4.2.3.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3657" FT /protein_id="CAE30574.1" FT /translation="MDVVEVATPGGSYPIHIGPGRLDALDASIPADATAIAVVTNPTVA FT GLYGARVEAALARTGKRVLRIELPDGEAHKDWQTLNLIFDALLENRLDRRAVLVALGGG FT VIGDMTGFAAAVYMRGIRFVQVPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQPVAVE FT IDTEVLGTLPAREVSAGLAEVIKYGLILDAGFWQWCEDNVGALRALEPRALAYAIRRSC FT ELKAQVVGQDERESGLRAILNLGHTFGHAIESGLGYGEWLHGEAVGCGMVQAAELSTLA FT AGFPAADVQRVRDLVREIGCPTVAPDLGAERWLALMQVDKKTEGGEIRFVLMPRIGQAL FT SRAAPEADVRTALERTTR" FT misc_feature 66802..67818 FT /note="HMMPfam hit to PF01761, DE 3-dehydroquinate FT synthase, score 5e-168" FT misc_feature 67042..67110 FT /note="1 probable transmembrane helix predicted for BB0072 FT by TMHMM2.0 at aa 96-118" FT misc_feature 67234..67254 FT /note="PS00307 Legume lectins beta-chain signature." FT CDS 67830..68984 FT /transl_table=11 FT /locus_tag="BB0073" FT /product="putative phosphohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3658" FT /protein_id="CAE30575.1" FT /translation="MNKDGTVVLMNELASYASDPSKTRGRRHSEPPPENRTEFQRDRDR FT IIHSNAFRRLEYKTQVFVNHEGDLFRTRLTHSLEVAQIARTLARSLRVSEDLTEAIALA FT HDLGHTPFGHAGQDELNACMRELAPQAGGFEHNLQSLRVVDELEERYAEFNGLNLCFET FT REGILKHCSATHARQLGAVGERFLDRTQPSLEAQLANLADEVAYNNHDVDDGLRSGLIT FT LEQLQEVGIFARHYAEVARRYPQLAPRRATSETIRRMINTLIVDLTATSLARIRDHAPA FT SADDVRRAPPLAGFSAAVRREADELKKFLFDNLYRHYRVVRMTTKAQRIVRELFQAFLG FT DPRLLPPDYRREQPQDQARAISDYIAGMTDRYAIREHRRLFEMG" FT misc_feature 68046..68453 FT /note="HMMPfam hit to PF01966, DE HD domain, score 4e-14" FT CDS complement(69158..69817) FT /transl_table=11 FT /locus_tag="BB0074" FT /product="putative glutathione S-transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3659" FT /protein_id="CAE30576.1" FT /translation="MYTLLIANKNYSSWSLRAWLALRQAGIPFEEQKLGLLTEAFTQRL FT QAITPAGLVPVLLDGDFAVWDSLAICEYVAERHPDAQLWPADRRARARARSLAAQMHSG FT FGALRQTMPMNIEARLPGIDLSAAQADISRVQAIWHDTRAEFGQSGPFLFGRFSIADAF FT YAPVVSRFQTYGVAAAGAVRDYMEAVQALPAMQAWTRDALAEATFVADDEPYRTHR" FT misc_feature complement(69590..69817) FT /note="HMMPfam hit to PF02798, DE Glutathione FT S-transferase, N-terminal domain, score 2.2e-08" FT CDS complement(69874..72732) FT /transl_table=11 FT /gene="uvrA" FT /locus_tag="BB0075" FT /product="excinuclease ABC subunit A" FT /note="ortholog of Bordetella pertussis (BX470248) BP3660" FT /protein_id="CAE30577.1" FT /translation="MDAIRIRGARTHNLKNVSLDLPRHQLVVVTGLSGSGKSSLAFDTL FT YAEGQRRYVESLSAYARQFLQLMDKPDVDLIEGLSPAISIEQKSAGHNPRSTVGTITEI FT HDYLRLLYARVGTPYCPDHGLPLQAQSVGQMVDAVLAWPAEARLAVLAPIARARKGSFE FT DELASLQAQGFVRLRVDGQLQEIEQLPALKKTEKHDLDVVIDRLRIRPESQQRLAESFE FT TALQLAEGRAIALDMDSGREQVFSSRYACPICSHSLAELEPRLFSFNNPMGACPGCDGI FT GQVGFFDPKRVVAFPELSLAAGAIRGWDRRNSFTHSLLTSLATHYEFDIDTPFEELPAE FT VREKVLHGSGEEEIAFFYVNEKGRSTVKRHPFEGVIPNLERRWRETDSATVREELGKYR FT NIKTCPDCGGSRLRPEARNVLIGSEPREGERHGQAIFEVESMPLSVCLDWFRQLQLTGA FT KQEIAQRIVREIEARLSFLNNVGLNYLSLDRSADTISGGEAQRIRLASQIGSGLTGVMY FT VLDEPSIGLHQRDNDRLIGTLQHLRDLGNSVIVVEHDEDMIRCADWVVDMGPGAGEHGG FT QVVAQGTPEAVQTDPQSLTGQYLSGARAIEIPARRPVADDQPWLHLSGATGNNLKSVDL FT RIPAARLVCVTGVSGSGKSTLVNDTLAVALARQLNHAQGEPAPYAGLAGLEHFDKTISV FT DQSPIGRTPRSNPATYTGLFTPIRELFAGVPEARARGYDPGRFSFNVKGGRCEACQGDG FT VVKVEMHFLPDMYVPCDVCHGKRYNRETLEIRYRGRNISEVLDLTVEQALEYFESVPAI FT ARKLHTLIDVGLSYIRLGQSATTLSGGEAQRVKLSLELSRRSTGRTLYILDEPTTGLHF FT HDIELLLKVLNQLVDSGNTVLIIEHNLDVIKTADWLVDMGPEGGDGGGRVVAQGTPEQV FT AASPDSHTGHYLGRVLRNGKRR" FT misc_feature complement(70000..70815) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1e-27" FT misc_feature complement(70183..70227) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(70411..70428) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(70771..70794) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(71023..71685) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 4.4e-06" FT misc_feature complement(71209..71253) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(72619..72642) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 72888..74072 FT /transl_table=11 FT /locus_tag="BB0076" FT /product="putative transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3661" FT /protein_id="CAE30578.1" FT /translation="MPADQKLQLTRSERRASVALAGLFACRMLGLFLLLPVFAVAARDL FT PGGNDPARVGLALGMYGLTQAFMQIPFGLASDRWGRRPVVVAGLVLFIIGSVVCALADD FT VYWITLGRAIQGAGAISAAVTAWLADATRDEVRTRAMAMVGGSIGLSFAVSLVAAPVLV FT GWWGLSGLFWTIACLGLASLAVARWMVPVVPRTEARTMQGASARAVLLHADLLRLNFGV FT FVLHLIQVALFVVTPSLLARLGGLDARDLWRVYLPVILVSFVLMVPAVFVAEKRRAHRA FT ALRAAVAGLIVVCALLPLAAHGFYALALALTGFFVAFNILEALQPSLVSRVAPAQYKGL FT ALGFYNTAQAAGLFAGGALGGWLAASGGADAVYIAAAALAALWLAVTWALRPLR" FT misc_feature 72888..73010 FT /note="Signal peptide predicted for BB0076 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.975) with cleavage site FT probability 0.391 between residues 41 and 42" FT misc_feature 72933..72965 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature join(72936..73004,73047..73115,73134..73193,73203..73271, FT 73305..73373,73401..73469,73530..73598,73641..73709, FT 73728..73787,73797..73850,73911..73979,73989..74057) FT /note="12 probable transmembrane helices predicted for FT BB0076 by TMHMM2.0 at aa 17-39, 54-76, 83-102, 106-128, FT 140-162, 172-194, 215-237, 252-274, 281-300, 304-321, FT 342-364 and 368-390" FT misc_feature 72939..74066 FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.0029" FT CDS 74305..74805 FT /transl_table=11 FT /gene="ssb" FT /locus_tag="BB0077" FT /product="single-strand binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3662" FT /protein_id="CAE30579.1" FT /translation="MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASG FT ERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEGRLKTRKWQDKDTGADRYSTEIVAD FT QMQMLGGRDSGGDSGGGYGGGYDDAPRQQRAPAQRPAAAPQRPAPQAAPAANLADMDDD FT IPF" FT misc_feature 74314..74352 FT /note="PS00735 Single-strand binding protein family FT signature 1." FT misc_feature 74314..74634 FT /note="HMMPfam hit to PF00436, DE Single-strand binding FT protein family, score 2.3e-61" FT misc_feature 74455..74484 FT /note="PS00736 Single-strand binding protein family FT signature 2." FT CDS 75038..77152 FT /transl_table=11 FT /gene="bfrC" FT /locus_tag="BB0078" FT /product="ferric siderophore receptor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3663" FT /protein_id="CAE30580.1" FT /translation="MPALFMLALGAVAAGARAQPAAAGVPDTQGVAQMPAVTVNAAPVD FT DTLEHLEAPVDTGALGRRTQLETPFSTTVVTARDMEERQVNKLGDVFALDASVTDNSAS FT YGAWASYLTVRGLPLDWQNSYRIDGRPFLSYVTTLPFEHFEQIDLLKGASGFMYGFGSP FT GGLVNYVTKKPTDEAVRSVELGYMSKGLLREHVDLGGRVGESGALGYRLNATHEEGNTY FT NGGSLYRDSVSLALDARLSDRLTWDFQSIYQDRKAIGQEPTIYAGTMAGSELPSPVRND FT NDRLVGQGPYADNAFRYYSTGLKYQLADEWTLSTNYSYSSTRTRRNESVLFLRDQAGDY FT DDYRSDYGEAYGYNQWQAMLEGKFATGPLKHHVVAGASWQKQKNDYSANGVYQLQGTGN FT LRARNTNTYYSEGQLHLYRAAEITQKALFASDTVDLTGGWSVLGGLRYTNYAQQGFDAT FT GARTSRYDKNGVLTPTFALMYKLTPRTMAYASYIESLEPGSSVGATYANFGALLDPLKS FT KQYELGIKTEQDGWAATAALFRIEKKAEYANAANELVQDGKTLYQGLELGASTRIARDW FT NVGGSLMLLDSEYKKGSDFTGNRVAGAPKFVAAAQLAYSVPQVPGLKLRADVKYTGNTM FT LGASNRVQVDDYAIVNIGATYDTQIHGYEATFTAGINNVANKRYWLYQSSDYVKAGDPR FT TYGLTASLKF" FT misc_feature 75038..75106 FT /note="Signal peptide predicted for BB0078 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.848 between residues 23 and 24" FT misc_feature 76829..77146 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00593, DE TonB dependent receptor FT C-terminal region, score 7.2e-22" FT misc_feature 77096..77146 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="PS01156 TonB-dependent receptor proteins signature FT 2." FT CDS 77289..77792 FT /transl_table=11 FT /locus_tag="BB0079" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3664" FT /protein_id="CAE30581.1" FT /translation="MGHGIAGGTGLAARNEAPELIRALDRDDERCWVPLAPGAWFYPMA FT FDVRNGAWHSVFRVAPGAQLPTHYHLGRVVGCTLRGRWHYRERDWEHRPGSYLLEVPGD FT SHTFEVIGEETVELFTVNEGGFLLLDERGDVTGITDVLLRLEQARAHYERVGLGRAAID FT SLIR" FT CDS 77811..78590 FT /transl_table=11 FT /locus_tag="BB0080" FT /product="putative aldolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3665" FT /protein_id="CAE30582.1" FT /translation="MTTLKARLRQGQAITMIGNSLPDTYAAEMVASAGFDAVMIDLQHS FT AIGLHEVNDLARAVRAQGCAPVVRVAANDPAAITKVLDGGVDAVVAPMINSAEACRQFI FT SACYYAPLGDRSFGPYLGQVIQRQSIQDYYAQTRDRLLPIAMIENEEGVRQAEQIMRTE FT GLGAIYVGASDLSIAMGMDCVPDYRNARLLDCIKGLIDLGERCGIPVGAFAPTLEDSLM FT LQSLGSRILWVGSDQGFIKAGCAARAQQYHAESSPRR" FT misc_feature 77814..78566 FT /note="HMMPfam hit to PF03328, DE HpcH/HpaI aldolase FT family, score 9.2e-20" FT CDS 78619..79635 FT /transl_table=11 FT /locus_tag="BB0081" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3666" FT /protein_id="CAE30583.1" FT /translation="MKTLASMVRWPRIAGAVVRQACAAALGLALGAAPALADYPSRPVT FT LVVPSPPGGSTDAIARVLADALGKRLGQSIVIENKGGGGGIVGSSYVLDKPADGHTLLL FT AISSKTVARALQPALAYDPIRDFTAVALVSRVPTVMVTSVAAGLPDFARLKAYIAANPG FT KTAWAVPGIGTAPHLTEHVLMQALGGKVNEIQYRGSAPMHVDLLAGRVDVVVDSYTALR FT QHIDDRKVVPVAVIGRGRIEAMSAVPTLGELGYRTFEEVLFDGWNAIDVRASTPPEVVA FT RLSQALQDVLADRAFRERVVQLGLVPFAPMPASQAQDFVQDVSRVLSPVAASLAAAQ" FT misc_feature 78619..78729 FT /note="Signal peptide predicted for BB0081 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.995 between residues 37 and 38" FT misc_feature 78793..79626 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.5e-59" FT CDS 79689..80483 FT /transl_table=11 FT /locus_tag="BB0082" FT /product="GntR family regulatory proteins" FT /note="ortholog of Bordetella pertussis (BX470248) BP3667" FT /protein_id="CAE30584.1" FT /translation="MSASVDVLSLPEVEAAASADTPNLLYWTIYQGLVRSIEADTAAVG FT KDLPIERLISAHYSASRFTVRQALDLLEKRGYIRKQRAKPARVISRSPVVPVERHLRRL FT SDILSPAVIHQTRVTGFGPARHDEAAATLGQAPGAQLYRLQLVHADQAQNIGFSDIYFP FT AHIGQRLSLQDFDAAARNGPLFVYPIVEQKIGFKVDHARINIGAESHARAQRTAVAEAL FT GTAPLVRVQYVFSHAGEPVQFTTNWLDSRFFSVSYELAEGEF" FT misc_feature 79773..79952 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 5.9e-06" FT CDS complement(80480..81421) FT /transl_table=11 FT /locus_tag="BB0083" FT /product="transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3668" FT /protein_id="CAE30585.1" FT /translation="MIAKHLDLNLLMIFDAILAEGHVTRAAERLAMSQSAVSKGLAQLR FT QAFGDPLFLRASRGVVPTHRALEIADQVRQAIAALNSLAGPVTEFDARSAHAHFNIGAT FT DYVSFVLLPGLMRRLQETAPHVSLTLHDMESMMPEEMLLAGKVDLVISSVASVNFPIYR FT QELFRDHYVCLCRAGHPALADPVPIEQFVSSRHLAMPRQNGARERVLQDTLQRLGVTRD FT VAVQVPHMLAIPATLTATDLVATMACRVAREFAARHPLQVLAHPLPLPDFPVSQLWHDR FT TRRSPSHQWLRDTVYDLARVNACPAPQDGAPG" FT misc_feature complement(80522..81148) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.6e-26" FT misc_feature complement(81221..81400) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 9.9e-23" FT misc_feature complement(81266..81358) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(81296..81361) FT /note="Predicted helix-turn-helix motif with score FT 1238.000, SD 3.40 at aa 21-42, sequence FT GHVTRAAERLAMSQSAVSKGLA" FT CDS 81701..83191 FT /transl_table=11 FT /locus_tag="BB0084" FT /product="putative chlorohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3669" FT /protein_id="CAE30586.1" FT /translation="MLTQIKGEWVLGFADGNHRMLRDASVVYEGERIVHVGTEFDGVAD FT RVIDARGCLVAPGFIDTHVHSGHRALHKLLADGGRPDLFGQPYMDVTIARDGTRIKGYP FT NYLSREEAAVDPGIALHAAFTVAELLRNGVTTFVELGGHVMVQEALWRECERLGVRGYL FT GPGYDSGRWAADDQGRLRRVPYPDGGDHLFEEAVAFIKRVQAAGNDLVNGILVPREVEN FT CSVDILRRTVQAAQELGVPMATHAGYNVIEFYETVREHRMTPIELLHSVGMLGPRLNIG FT HANLISDSPRLNYSGGRDLALMGEHRVSISHCPINIVRRARVLDSWKKYREAGVNLTIG FT SDTYPRDMVMNMRTASYHGKVMSHDLTAASAAEVFEAATLGGARSLGRTDIGRLEPGAR FT ADVIAINVGRQDVLRYGPIWDPIRSLVECGVGDDVELVVTNGQVRMEQGRIAGVDLGAL FT RAEAQQFADNVWRDLQDWDPLRRTAQAMCPPSFCPDCM" FT misc_feature 82085..83023 FT /note="HMMPfam hit to PF01685, DE Chlorohydrolase, score FT 1.5e-20" FT CDS 83230..84216 FT /transl_table=11 FT /locus_tag="BB0085" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3670" FT /protein_id="CAE30587.1" FT /translation="MKKLMQWGAALALAVTCGAAQAGDAVAAYPQRPVRLIVPYGAGGA FT ADVLARIMAEKLSAIWKQPVIVENKPGGVGTIGIMATVQAEPDGYTLVSVPVSDLAVNP FT HLYRKRPFDVRKDLAPVSQVGAVPNVLLVSNALEVGDVQALVARAAAKPGYLTYSSPGV FT GSQAHIAAEMFAMRAGLSLQHIPYNSVPAALTDVAGGQIDMMFAQLPAVLPFVKSGRVK FT VLAVAADARTPLLPDLPTLGEVGGPSIGDAISWSAVMAPAGTPLALREKIAAGIASAIQ FT SPQVREKLAAQGLIGLGGTPQQLEQAWRQDYERYGAAVKAMHIQLLD" FT misc_feature 83230..83295 FT /note="Signal peptide predicted for BB0085 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 22 and 23" FT misc_feature 83374..84201 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.1e-79" FT CDS 84369..85514 FT /transl_table=11 FT /locus_tag="BB0086" FT /product="putative glycosyl transferases" FT /note="ortholog of Bordetella pertussis (BX470248) BP3671" FT /protein_id="CAE30588.1" FT /translation="MSQPHPLRIAHAEAAIGFGGQEQRILKEALAMRERGHHVELICRP FT QARLIERARDADIRVHTVPMGGLRNFVRGVPRVRRILREGGFDVLNTHSRIDTLLAGAG FT ARLAGTPLVVRTRHLSNRVNSMLSYTWIPHRVSTVSDHVRRYLIERGVSPAHIETIYSP FT INLPPPGLRSTLRDELGLPADAVVVACVAIMRATKGHRELIEALRPLMASRPQVHLVLV FT GNGSPLFEQLQALIAELGLGERIHMLGFRDDVPNVLAGSDIFALPTRKEASGTVFVEAA FT ACGLPVVGVDVGGVSEMLRNGETGLLVPPDDAAALQGALRSLIDDASLRARMGGAGERM FT VRDEGKFSLARLAERTELVYRKWLAERRDAPTAASRSARQS" FT misc_feature 84879..85388 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 8.2e-43" FT CDS 85521..86339 FT /transl_table=11 FT /locus_tag="BB0087" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3672" FT /protein_id="CAE30589.1" FT /translation="MSIPTSRLAAVQALPQDIAPQTPRDRMPAVLPVMDVVPAATDWPP FT FAVVDLLGATLLATGSERDVYQHPGNAALLIKIVNRARINEPGRRRPWHKKFHREDAHR FT VFITELVEYISTTVQLRQADGNTLLARIAGLALTSAGLGLVVEKIVDAEGKAAPTLAQV FT VSTQGFGPQLREQLRAFFLALIEAHVIFNDVSARNIVVGRNATGQDGLFLVDGFGPKQL FT LPLYAWSKTLNRRRLLRKYEDMVRKLARLGDRLARQAGQPLPGDGARPPR" FT CDS 86499..87470 FT /transl_table=11 FT /locus_tag="BB0088" FT /product="LysR family regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3673" FT /protein_id="CAE30590.1" FT /translation="MGALKNDSSLDVRMLRIFAAVAAADSLSAAAQALNITQSAVSQTV FT TQIESILGMRVLDRTRRPYRLTPAGVALQRQSRQIVDDIDRLIAQVREADLMNRPAIRI FT GMIDSFAATTGPAIVKRLTQSASQVLVWSGLAYGHAQALLNRQVDIIVTTDALEDVDGL FT VRRPILNEPFVVVAPAVRADEFAPLDLRQMAQAAPFIRFSGRSHFGAMIERHLRRCGVT FT APPFLEIDTSDVVMAMIAANLGWALMTPLCLLQGRSWLDQVVVLPLPGPSLARTLHQVS FT RLEEYQEMADMFWQLSRQALETEIFPQVTTQLPWLGRQMRLC" FT misc_feature 86499..86591 FT /note="Signal peptide predicted for BB0088 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.974) with cleavage site FT probability 0.638 between residues 31 and 32" FT misc_feature 86532..86711 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.3e-20" FT misc_feature 86571..86636 FT /note="Predicted helix-turn-helix motif with score FT 1583.000, SD 4.58 at aa 25-46, sequence FT DSLSAAAQALNITQSAVSQTVT" FT misc_feature 86574..86666 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 86781..87404 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2.3e-19" FT CDS 87496..88497 FT /transl_table=11 FT /locus_tag="BB0089" FT /product="periplasmic solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3674" FT /protein_id="CAE30591.1" FT /translation="MQETRRQFIKGMAIGAAALALPVAGRSWAAQAEAVRYGGSAWLGH FT YPAWLAIQAGYFKAENLEVGWESFGTTSARVSALLSGNIDMAVTAAPAALAVMSRGSRH FT FAIIGVPENFGRVEGLIVRSQVARLEDLKGKKVGVTFASSAHLLVLNLLDQAGLKAGKD FT VTVLNVPAPELPAAFQSGQIDAAAAWTPQFNAIRAMPDAKVLVDDTSFSLYKEYGVTPG FT PDVLVARRAFLDKNPEAVKRFLKAYFRANEQLKTQPDATVAALTELTKLSAADQLEMVK FT GADWYTAAEQGALLAPGSKYIDGLQKLAEMMVRYDQIDKAPPVREWVDAAYL" FT misc_feature 87496..87582 FT /note="Signal peptide predicted for BB0089 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.959 between residues 29 and 30" FT CDS 88561..89331 FT /transl_table=11 FT /locus_tag="BB0090" FT /product="ABC transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3675" FT /protein_id="CAE30592.1" FT /translation="MNAQNRQRRPDLLLISSVSVIVLLLFWEAVCRLQWVDALFLPPPS FT DVFARMGNMWEQGSLLDHIVASARRVMVGFAAATALAIPLGIFLGTSQRARAAFDPILS FT FLRPLPSMSWIPLSLLWFGITETQKYSIVFMGTFAPALLYVIEATRNIDPLLIRAARNL FT GASGPQVMRSVILPASLPQIFSGFKVILGLSWTCVISAELVAAKEGLGFLIMNGKEFFQ FT TDTVVLGMALISVTVLVTDVVFRIIENRVLAWSR" FT misc_feature join(88594..88653,88771..88830,88867..88935,88948..89016, FT 89107..89175,89233..89301) FT /note="6 probable transmembrane helices predicted for FT BB0090 by TMHMM2.0 at aa 12-31, 71-90, 103-125, 130-152, FT 183-205 and 225-247" FT misc_feature 89002..89235 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 5.2e-06" FT CDS 89319..90110 FT /transl_table=11 FT /locus_tag="BB0091" FT /product="ABC transporter ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3676" FT /protein_id="CAE30593.1" FT /translation="MVAVNDPMISIEGISKSFGSFQALQGVDLKIPRGEFLVVLGASGC FT GKSTLLNLITGFERPTAGRIVVNGREVVDVDPHCGMVFQQYALFPWLTVAENVAFGLKM FT KGVAAATRRETAQQFIEMVGLKGFENAYPKALSGGMRQRVSIARVLANDPDVILLDEPF FT AALDAMTRQVLQEELTRIYEQSGKTIVFITHSIDEALLLSSRMVIMSARPGRVACDMPN FT DLPYPRNADVQLSPRYIELKSQIWDIVQNEVMRSLQARADQ" FT misc_feature 89418..89954 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.3e-65" FT misc_feature 89439..89462 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 89724..89768 FT /note="PS00211 ABC transporters family signature." FT CDS 90138..91454 FT /transl_table=11 FT /locus_tag="BB0092" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3677" FT /protein_id="CAE30594.1" FT /translation="MSSPSGSSRTFPQYQSGSGWNAMLPKRTPRTAAPARRHFKSLVIG FT AGYTGLAAARRLAELQPQDQVLVVDATVAGEGSAGRNSGFLINLPHNTRMSGHHSPLEV FT ARKQIAMLQSGLDWLAQLSGQGGFDCGWDLAGKYHAAATADGEQSLRGALQQYGQWGVA FT FSELDRDALQAQLGTRYYRFGYHSMNNVFVQPAALIRGLADSLPENVWLMEDNPVLSID FT GSGPYKVRTRGGEFTADNVILANNAFARRLGFLRSRLVTIFTYAGVTPVLSPAQQALLG FT ERDQWGVIPANRLGTTLRRISGGRFMVRSAYSYEAEQPLERMEQLLRDSFVRRYPDLAA FT HDFEYVWSGSTGLTGNGASFVGAIQPGLYASVGCNGAGVIKGTIYGKLLGEQVAGHRSA FT MLDDLASFEKPNWLPPEPLRRIGALSTIAYQARKAGLEK" FT misc_feature 91227..91259 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(91591..91779) FT /transl_table=11 FT /locus_tag="BB0093" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3678" FT /protein_id="CAE30595.1" FT /translation="MARRRAPVFFDQIRTIVRKEEIMKMIAIGAGVMLLAGLVRACQGW FT RRLLRQLPDRNEDMTLF" FT misc_feature complement(91657..91779) FT /note="Signal peptide predicted for BB0093 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.687) with cleavage site FT probability 0.684 between residues 41 and 42" FT CDS complement(91788..92432) FT /transl_table=11 FT /locus_tag="BB0094" FT /product="TetR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3679" FT /protein_id="CAE30596.1" FT /translation="MPGRHFSHDRAKLAGMSIPKSELTFAAIVDAALDMAAAQGMESLT FT LGEVAKRLGISKSGVFSRVGSREALLHAVLQEYDRRFLGAVFAPAMAAPRGLPRLDAMV FT GHWIERAANVEALTGCIYVAGAFEYDDVDNPMRGRVQANVRGWRAALGRTVRQAIDEGH FT LRPDTDPEQLVFEIYSLMVGLMHDARFLRDPRAHERVRQAYARLIATYRNT" FT misc_feature complement(92211..92351) FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 1.8e-11" FT misc_feature complement(92238..92303) FT /note="Predicted helix-turn-helix motif with score FT 1374.000, SD 3.87 at aa 44-65, sequence FT LTLGEVAKRLGISKSGVFSRVG" FT CDS complement(92468..94645) FT /transl_table=11 FT /gene="glcB" FT /gene_synonym="glc" FT /locus_tag="BB0095" FT /product="malate synthase G" FT /EC_number="4.1.3.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3680" FT /protein_id="CAE30597.1" FT /translation="MTERIPHHGLQVAASLHRFIEDEALSGSGLAPDEFWAGFAALVRD FT LAPRNRELLAERDRLQGEIDAWHRAHPGPVRDSAGYQALLERIGYLQPQPAQVTASTRD FT VDSEIASQAGPQLVVPVSNARYALNAANARWGSLYDALYGTDAIPPVAGDDGKGYNPAR FT GEAVIARARAFLDEAAPLAQGSHADATAYAIEGGKLAVTLGAGQRTGLRNPAQLAGYQG FT DASQPAAVLLANNGLHFEIQIDRQHQIGATDAAGVKDVLLEAALTTIMDCEDSVAAVDA FT DDKVLIYRNWLGLMKGDLSESVTKGGKTFTRRLNADRQYHKPDGGTLTLHGRSLMFVRN FT VGHLMTNPAILDEQGNEVPEGILDAVITSLAALPDRANRLNSRTGSIYIVKPKMHGPAE FT AAFANELFDRVEDLLKLPRHTIKMGIMDEERRTSVNLKACIAAAAARVAFINTGFLDRT FT GDEMHTGMEAGPMLRKGDMKSSAWITAYERNNVLVGLDCGLRGRAQIGKGMWAMPDMMA FT AMLEQKIGHPKAGANTAWVPSPTAATLHAMHYHQVDVAAVQQALEQTRYDSVRDELLAG FT LLTVPVGDPAAWSADDIQRELDNNAQGILGYVVRWIDQGVGCSKVPDINNVGLMEDRAT FT LRISSQHIANWLRHGIVDRAQVNATFERMAKVVDQQNAGDPNYLPMAGHFDTSFAYRAA FT CALVFEGLTQPNGYTEPLLHEYRQAFKAAQR" FT misc_feature complement(92552..94597) FT /note="HMMPfam hit to PF01274, DE Malate synthase, score 0" FT CDS 94889..95653 FT /transl_table=11 FT /gene="glcC" FT /locus_tag="BB0096" FT /product="GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3681" FT /protein_id="CAE30598.1" FT /translation="METGVDGARKQIAEVVAERIERLILDGVLKAGQALPSERRLTEKL FT GVSRTALREGLRVLRARQIIHTAQGKGSYVAQISQVDAGPLVHLFNSQPRTLYDLLEVR FT ALLESESARLAAIRGTDADFIMIRRRYDEMLAAHGRETDSATHAHLDHAFHLAICQASH FT NAVLVHTLQSLTDLLLGSVFACVNNLYHREPHKRHIDQQHERLFLAVLAREPEQAHQAA FT RAHVDSVRQSLAEIEQEEQRLVRATLRLEGWV" FT misc_feature 94934..95113 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 2.7e-16" FT misc_feature 94991..95065 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(95650..96777) FT /transl_table=11 FT /locus_tag="BB0097" FT /product="putative dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3682" FT /protein_id="CAE30599.1" FT /translation="MVRPPYPIAILGAGKIGAAIALLLQRGGDYDILVADQDPARLQAV FT ARLGCRTAQVRDDDALQQAVSGRYAVLNALPFHRARAAAAACVRAGAHYFDLTEDVAST FT HAIRELAASAGTMLMPQCGLAPGFIGVVGSDLSRRFDRLLDLRMRVGALPRFPSNALRY FT NLTWSTEGLINEYCNACEAIVDGALVAVPPMEGYETFTLDGIEYEAFNTSGGLGTLPQT FT LLGKARNVDYKSIRYPGHCAIMKLLLNDLRLRERRDLLQEILESAIPSTDQDVIVILAS FT ASGYRQQRLVQESFSARIYGATVDGQTLSAIQLSTAAGVCTMLDLAVHGHLPQRGFIGQ FT EQVPLAALLENRYGRIYAGQPLPAREAPQALLPGS" FT CDS complement(97002..97388) FT /transl_table=11 FT /locus_tag="BB0098" FT /product="Putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3683" FT /protein_id="CAE30600.1" FT /translation="MKTLATAVMLSMTMAAGAQAADLGAEPTRAQVQAELVQAKANGQY FT TFGEQDYPAAITQGSALSAAEVRDDLAQAKAAGEVTFGNLDYPPQASNVNSSMTRAQVQ FT ADLAQAKNDGVVTFGNLDYPPQHG" FT misc_feature complement(97329..97388) FT /note="Signal peptide predicted for BB0098 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 20 and 21" FT CDS complement(97654..98580) FT /transl_table=11 FT /locus_tag="BB0099" FT /product="UbiA prenyltransferase family protein" FT /EC_number="2.5.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3684" FT /protein_id="CAE30601.1" FT /translation="MSASQQQSVDLNDIVFTDWVERWLPRPWRPYARLCRLDRPIGTWL FT TLLPCIAALVQAAGGLPDLRRLLIFSLGALLMRGIGCTVNDMWDRDIDKHVERTRFRPL FT TSGQLSMRQAVAFLIGQLLVCASLLFFINDMSRWLAVAVLPFVFIYPFCKRVTYWPQVV FT LGICFNWGMLMAWSDTQDHLPLAAIAMWLGAVLWQVGYDSIYAYVDVRDDRSLGLHSTA FT MRFGEQGKLWIGGFYAATLALWTWGGYAMDLGWGYFAGIGAVAIHLAWQLREFDLQRPE FT RNFKLFRANLWTGVLLIAAALAGTLPY" FT misc_feature complement(join(97663..97731,97765..97824,97837..97896, FT 97957..98025,98053..98106,98125..98178,98188..98256, FT 98317..98385,98395..98463)) FT /note="9 probable transmembrane helices predicted for FT BB0099 by TMHMM2.0 at aa 40-62, 66-88, 109-131, 135-152, FT 159-176, 186-208, 229-248, 253-272 and 284-306" FT misc_feature complement(97666..98454) FT /note="HMMPfam hit to PF01040, DE UbiA prenyltransferase FT family, score 2.8e-62" FT misc_feature complement(98260..98328) FT /note="PS00943 UbiA prenyltransferase family signature." FT CDS complement(98667..99866) FT /transl_table=11 FT /locus_tag="BB0100" FT /product="putative aminotransferase" FT /EC_number="2.6.1.44" FT /note="ortholog of Bordetella pertussis (BX470248) BP3685" FT /protein_id="CAE30602.1" FT /translation="MDKPFEPECSFSERAKQLTSSAIREILKVTERPEVISFAGGLPAP FT GGFPVEVVQAAFDKVLATNGRAALQYGPTEGYAPLRQWVADDLNAAGANVTADQILIVS FT GSQQALDLLGKVLIDKDSPILVEDPSYLGALQSFSLYQPKYVPIPTDDGGLVPEAITAE FT LAEGARFLYALPNFQNPTGRTLNLERRKALVRQAAQFGVPIIEDDPYGELRYAGEPQPG FT LLALAGECGATVIRLGTFSKVLAPGLRLGYIAAPRNIINKLVQAKQATDLHTPTLTQMA FT VYEVVKTGFLAEHLPRVREIYRVQGRCMLEAIEREFPASVSWTKPEGGMFIWVTLPEHI FT DSTKLLAQAVEQNVAFVPGGPFYAGTPRQNTLRLSFATVPEAKIREGIAILGKLLKAAI FT " FT misc_feature complement(98682..99596) FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 2.3e-06" FT CDS 100005..100499 FT /transl_table=11 FT /locus_tag="BB0101" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3686" FT /protein_id="CAE30603.1" FT /translation="MFDATPISTVSKPVFYAELAAQARALLAGEHDRIANAANFSALVY FT QALPDINWAGFYFHDGQELVLGPFQGKPACVRIALSRGVCGAAASQRRTQVVPDVHAFP FT GHIACDAASRAEIVVPLVHQGSLLGVWDVDSPLPGRFDDEDRAGMEALCEVFLHSLGSA FT D" FT misc_feature 100098..100484 FT /note="HMMPfam hit to PF01590, DE GAF domain, score FT 5.1e-06" FT CDS 100787..101686 FT /transl_table=11 FT /locus_tag="BB0102" FT /product="putative dihydrodipicolinate synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3687" FT /protein_id="CAE30604.1" FT /translation="MQYPAQSPFQGIWIPLVTPFADGAVDLPALRKLVRDYKAAGVDGL FT VACGSTGEAAALDEAEQLAVLDAVLEEAGALPVAMGLAGNHQGHVLRRLARLGERPLAG FT VLAPAPYYVRPSQAGAQAYFRALADASAAPLILYDIPYRTGAQLDTATLLALAEHPNIA FT AVKDCGGSVDKTLALIAHGGMAVLAGEDLQGLGTLCLGGTGMIAAAAHVRPDLFVAMHR FT AVRAQQLGQAQRLFLALAPVIRLLFAEPNPAPLKALLASQGRLRNEMRAPMLPAAEALA FT ARLRAELDALDRAFAPGV" FT misc_feature 100808..101662 FT /note="HMMPfam hit to PF00701, DE Dihydrodipicolinate FT synthetase family, score 1.9e-43" FT misc_feature 100916..100969 FT /note="PS00665 Dihydrodipicolinate synthetase signature 1." FT misc_feature 101198..101290 FT /note="PS00666 Dihydrodipicolinate synthetase signature 2." FT CDS 101913..102689 FT /transl_table=11 FT /locus_tag="BB0103" FT /product="putative desaturase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3205" FT /protein_id="CAE30605.1" FT /translation="MGQAFAALSVWQVMGYGLVFFGGIYLLFGAATWLLTRRVLPALGV FT GRPLDPRPLGPGQWRREFLQSGLSVLIFGLGMVFPWGLVQLGWARLDDDAGPWRIVAEI FT LVLVIWNDVHFWINHRLLHTRLLRRFHLPHHRSVVTTPFSTYSFHPIEALMLGNVILLP FT MVVHDFSFWSLLSVPLFSLFFNCVGHANYDFFPGVSYAHWFAASRRHHLHHACYQGNFG FT FQFTFMDRLFGTRLGADAAQGQLAAYRKRGAVGSAR" FT misc_feature 101937..102572 FT /note="HMMPfam hit to PF01598, DE Sterol desaturase, score FT 1.7e-05" FT misc_feature join(101949..102017,102111..102179,102207..102266) FT /note="3 probable transmembrane helices predicted for FT BB0104 by TMHMM2.0 at aa 13-35, 67-89 and 99-118" FT CDS 102673..103551 FT /transl_table=11 FT /locus_tag="BB0105" FT /product="putative fatty acid desaturase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3207" FT /protein_id="CAE30606.1" FT /translation="MVRPAEWLRHRRDWQSILYLAALPALAAWQWVHGWHWALYAPMLF FT LTLGVGVIHHNHAHRRMWRPRWLNCLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRD FT VARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLG FT LWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWV FT NPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFS FT RRCRTHTLMRP" FT misc_feature 102673..102753 FT /note="Signal peptide predicted for BB0105 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.628) with cleavage site FT probability 0.624 between residues 27 and 28" FT misc_feature join(102718..102771,102781..102834,102871..102939, FT 103024..103092,103150..103218) FT /note="5 probable transmembrane helices predicted for FT BB0105 by TMHMM2.0 at aa 16-33, 37-54, 67-89, 118-140 and FT 160-182" FT misc_feature 102790..103443 FT /note="HMMPfam hit to PF00487, DE Fatty acid desaturase, FT score 0.00014" FT CDS 103579..105492 FT /transl_table=11 FT /locus_tag="BB0106" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3208" FT /protein_id="CAE30607.1" FT /translation="MPVAFDRVYLHSAGYFLPGEPVDNDAMDQYIAPLNRISGRIKNRI FT LAENGIRQRYYAIDPEGRTRWSNAQLAAQAIQACLARGDADLSQVSLLASGSSGGDTLM FT PGFANMIQGELSAAPLETLSVHGICAAGVGAIQAAAQGIELGAHRRALAVASELPSRLF FT KRSRFAAPGYDADFDAHFLRWMLSDGAGAMLLGDASQPLAGAANGVRLRLKWIHQRSFS FT GDYPVCMQLGQSAGGQAHLDYGSWSEAEAAGALLLRQDIRLLPHLFDIGIHEYAKLVHD FT GWVDPRQVSHFLCHYSSEKFIPVVEDLMDKAGLAIARERWFSNLAWRGNTGAASILIML FT AEFLQTRTVQPGEQIFCYIPESGRFMAAYMLLQAEGPDETAQPARARAVPAAAPAGEAD FT FIAPPHDPAHAPQGLEPLLGELAAIWHDYRSRVWRTPVIRHLRQGRFAASDYLNWMENW FT VPQVREGSKWMREAAASLSETYQPLAALIGTHAGEEQDDFKILFQDYRNAGGAVEDIDA FT LRRNPGGEALNAYLHALAATRDPIGLLGAIYVIEGTGQRIVPALLPLLKAALALPPDAF FT RFLEYHGHNDENHLARWLLAVELALDCDDSGRARQQIVDTARRTAALYLMQFQHVMEER FT TA" FT misc_feature 103783..103815 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 103948..103980 FT /note="PS00639 Eukaryotic thiol (cysteine) proteases FT histidine active site." FT CDS 105489..106370 FT /transl_table=11 FT /locus_tag="BB0107" FT /product="conserved hypothetical protein" FT /protein_id="CAE30608.1" FT /translation="MSRPEPDFLSQPHDPADPDPWRALYLDRSTPLPDPVKQAWLADSS FT SASRQYLLPFLRPLARAFIILIQVVKTFLPRRWSHSRLLHRILAWGLEHFVSPQANWLI FT LRHFHLGAQILAFIARNAPVQVETTPLEPARIADLRDELFVKHDLNLFNFVIRLNQALR FT DAGQTMHAPEQVDYSMIRDPGLRLEDMPQRRRNFLDLQSAIELFTPLYQLMLTDNDFWR FT AANSLQLDETIGIYAAQLLGAPQHLILVNNKHPLVPMSTLRAGYRLVLHGLSTEMLHSL FT LMQMKQQQAEQA" FT CDS complement(106377..107714) FT /transl_table=11 FT /locus_tag="BB0108" FT /product="probable amino acid permease" FT /protein_id="CAE30609.1" FT /translation="MTRAAESGMAQARGLSVLDAVAVLVGVVIGIGIFGFPPLVAQHAQ FT SESVYLALWLGGAAVMLMGALCYAELGSAYPGAGGEYLYLRHAWGPRVALLFAWARCTV FT IQTGAIAVVAFIYGEYAQELAPLGTHGVALHAAIAVIALTLLNIMGTQPSKRIQLVFTV FT LTLAALAAVVATGLSAPPAPPAPVEPLAGSTLGLLGMGLVFVLLTYGGWNEAAYLSGEL FT REARRNMAKVLLIGTAVVAGAYLLTNLALLQIFGLQGLRETRAVAATLMTLAAGPYAAI FT VLSLLVCVTALSTINGTILTGARVYSALGQDVPRLRPLAGWSMRGQTPTSALLAQGAIT FT LVLLGYGAYAHDGVQTLVAYTAPVFWLFMLLVAASVWRLRRLDPHRPRPFRVPLYPLPP FT LLLGLTCAGLVWSSARYAGVGALLGLAVLAAGLPALRLLRAAPRSA" FT misc_feature complement(join(106401..106469,106479..106547, FT 106584..106652,106665..106724,106827..106895, FT 106953..107021,107082..107150,107178..107246, FT 107265..107321,107364..107432,107493..107561, FT 107589..107657)) FT /note="12 probable transmembrane helices predicted for FT BB0108 by TMHMM2.0 at aa 20-42, 52-74, 95-117, 132-150, FT 157-179, 189-211, 232-254, 274-296, 331-350, 355-377, FT 390-412 and 416-438" FT misc_feature complement(106407..107597) FT /note="HMMPfam hit to PF00324, DE Amino acid permease, FT score 0.024" FT CDS complement(107711..108556) FT /transl_table=11 FT /locus_tag="BB0109" FT /product="Putative methyltransferase" FT /protein_id="CAE30610.1" FT /translation="MRTLVAPTHAPKRRMLLALLATPALALAQPAWTQQPPPVKLDVPY FT VPTPDDAVARMLEMADVTAQDTVIDLGSGDGRIAIAAVRDRGARSAMGVDIDPERIAEA FT RANARKAGLADRVTFVQQDLFDTDISKATVLTMYLLPDVNLKLRPRILNSLAPGTRVVS FT HAFTMGEWDSDRYELVDGRSLYLWVVPAHAAGDWQVEDPAGPFTLSVRQDFQKVTASAQ FT RQGERLGVAEAALRGTDLRFTVDAGSGPRTYVGRIQGDRMTAVQAPGNESGWRATRRAP FT " FT misc_feature complement(108458..108556) FT /note="Signal peptide predicted for BB0109 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.865 between residues 33 and 34" FT CDS 108997..111906 FT /transl_table=11 FT /locus_tag="BB0110" FT /product="putative adhesin" FT /note="Similar to Bordetella bronchiseptica putative outer FT membrane ligand binding protein BipA SWALL:Q9APE8 FT (EMBL:AF304006) (1578 aa) fasta scores: E(): 1.2e-114, FT 48.69% id in 807 aa, and to Escherichia coli O157:H7 FT putative adhesin EaeH or z0375 or ecs0336 SWALL:Q8X6G3 FT (EMBL:AE005207) (1417 aa) fasta scores: E(): 2.8e-16, FT 23.87% id in 1001 aa" FT /protein_id="CAE30611.1" FT /translation="MKQAIHAVAFRHDALARVGRVHRRRGAAALAGVLTLQTVAPAFAQ FT GAPSFSARPAQADRQDAADSAMLRVAQTARQLAQRQAAGSRASARVDGDLLKGQAEAQA FT NELLQEGVRLANQTELPFLRRLQGGVNYDFSNKDLSLDLRTIDEVHRGERDRVLLQLSG FT HNRNHRPTVNGGVVLRHALNQHMAVGANAFLDYEFGKNHLRGSLGGEVIAPQFTLYGNV FT YAPMSGWKAAKRAERREERPASGWDVGVRLQPEALPGLAIKGQYFRWSGAAVDYFDNGR FT PQRNARGYKYGVEYRPVPLVAVGLEQTKVLGGARQTTVQLGVNLSLGEPLSRQLRHQSG FT PAFDLQARMGEFVERENRIVLQTRRKHVVLPLTIARVDTDPATGRITVTGVTEPGAQVS FT LGLPNGEVVVAQADGSGTYRATSARDMVGGPVRARATNRHGDRSREVTHHYVDVAVKGE FT VPLTLGAVRTHPGTGVVTVTGKTGPGAKVRIDFPDGTFGDVVAGNGGDFTVASKGDVTA FT SGPIVAIARDDDGRESPRRTVQYDDRVNGGGSGAPTVVLHTDGTNGRVTVSGKGRPGDT FT IRVDFPDGTTKEVVAGPDGTYRVTSDRDMTAGDITVSGTDAKGNVGGPVKRPYHDIFVP FT VPPTVEVATDSSSGRVTVSGKATPRAKVKVDFPGGTSKTVTADADGRYRATSDGDVPGG FT DIVVTQTGMPGAAGKPVRRPYVDTVAPTPMKVTIDSMRTDGNSGVVTVTGYTVGGSTVT FT VTFPDGTTAGTTANDRGKYTVTSTADIPAGPIRVSARGPRNQQGSATDHYLDAWTKQTL FT LGGKIRLLRPVARLLLSPGSMTYTEIAKSFDGSSLDGIVARFEPANGAPPQTAALLAAI FT KLHDPNYRLESNKMFIYLDTMNSDPYNRVPNGDYPVTLVLEDKATGAREATTMVLKVTG FT STYGKAPVVPGANGVLGTGPGPSLGGSLLIGGEGGLLGS" FT misc_feature 108997..109128 FT /note="Signal peptide predicted for BB0110 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.962) with cleavage site FT probability 0.910 between residues 44 and 45" FT CDS 112001..113629 FT /transl_table=11 FT /locus_tag="BB0111" FT /product="putative dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) FT BP3209+BP0705" FT /protein_id="CAE30612.1" FT /translation="MCATAVDTGMEFDYIIVGAGSAGCVLANRLSADPSVRVLLLEAGG FT ADSWHWIHIPVGYLYCIGNPRTDWCYRTQADPGLNGRSLGYPRGRVLGGSSSINGMIYM FT RGQRADYDGWAAQGNPGWGWDDVLPLFKASEDHHGGASAFHGAGGEWRVERQRLSWKLL FT DAFRAAAAQAGIASIDDFNQGDNEGCDYFEVNQRSGVRWNTAKGFLRPAMDRGNLKVLT FT GARVARVVFQNRRAVGVRFLAEGGGEQYAQARGEVVLAAGAIGSAQLLQVSGVGPAALL FT QARGVPVLHDLPGVGANLQDHLQLRLIYRVQGARTLNGVAGTLWGKAWMGLQYAVQRRG FT PLSMAPSQLGAFARSGPEQSRANLEYHVQPLSLEKFGDPLHDFPAFTASVCNLRPTSRG FT HVRIVSPDPGEHPEILCNYLSTEADRKVAADSIRLTRRIVAQPALARYQPQEYKPGAQW FT QSEEDLQRLAGEIGTTIFHPVGTCRMGDDAQAVVDAALRVHGLQGLRVIDASIMPTITS FT GNTNSPTIMIAEKGAQLLREARRQT" FT misc_feature 112034..113593 FT /note="HMMPfam hit to PF00732, DE GMC oxidoreductase, score FT 8.5e-184" FT misc_feature 112040..112072 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 112265..112336 FT /note="PS00623 GMC oxidoreductases signature 1." FT CDS 113756..115042 FT /transl_table=11 FT /locus_tag="BB0112" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0706" FT /protein_id="CAE30613.1" FT /translation="MPHAIEIVATLLFSVAVLHTFSVPFFARLAHRNGPHAGVWHLLSE FT VEAVFGVWAFVLIACMALMAGTDRAVQYMDTRNFTEPLFVFAIMVVASSRPILELVGSL FT VRLLAAMVPVRRELATFFIVMSIVPLGGSFITEPAAMTLAAILLRDGYFRCSGRAGFKY FT MTLGVLFVNVSIGGVLTSYAAPPVLMVAATFGWDTAYMATHFGWRAAVAVCLNAAVLTM FT LCRQALLEGAVGTGAGVNASDDAAEKRPPVPAPVTLMHLAFLVGIVLTAHHPAVFLGML FT MMFIGFAHAYQRHQSRLMIREGLMVGFFLAGLVVLGGLQKWWLQDLLGGLEPTVLFWGA FT TALTAITDNAALTYLGSLVEGTSEAWRYMLVAGAVTGGGLTVIANAPNPAGFAILGKYF FT PDGSISSGRLFIAALVPTLVAAAMFMLPV" FT misc_feature join(113774..113842,113900..113968,114002..114070, FT 114128..114196,114257..114325,114542..114610, FT 114647..114715,114758..114826,114863..114931, FT 114974..115033) FT /note="10 probable transmembrane helices predicted for FT BB0112 by TMHMM2.0 at aa 7-29, 49-71, 83-105, 125-147, FT 168-190, 263-285, 298-320, 335-357, 370-392 and 407-426" FT CDS 115216..115515 FT /transl_table=11 FT /locus_tag="BB0113" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0707" FT /protein_id="CAE30614.1" FT /translation="MPIYAYKCSACGHAEDVLQKISDAPLADCPACGQSTYSKQVTAAG FT FQLKGSGWYVTDFRNNNGAGKPAAGQSAAPAASGGDAGSAPATPAPAAPAATST" FT CDS 115516..116181 FT /transl_table=11 FT /locus_tag="BB0114" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0708" FT /protein_id="CAE30615.1" FT /translation="MRHSVMRVFKKYFITGLLIWVPLAITVWVLGLLVATLEGFVPGFL FT SSQSLFGVDIPGFRFVLVITVVLLTGVFAANLLGRSLLEHWERILGRIPLVRSIYNSVK FT QVSDTVLAPNGRAFRQAVLIQYPRAGSWTIAFLTGTPSGEVASYLPGEHLSVYVPTTPN FT PTSGFFLMMPRDQVIDLQMSVDAALKYIVSMGVVAPADRRPVSPPTTPGAPLAPGAEP" FT misc_feature 115516..115671 FT /note="Signal peptide predicted for BB0114 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.823) with cleavage site FT probability 0.419 between residues 52 and 53" FT misc_feature join(115552..115620,115678..115746) FT /note="2 probable transmembrane helices predicted for FT BB0114 by TMHMM2.0 at aa 13-35 and 55-77" FT CDS 116222..118012 FT /transl_table=11 FT /gene="aspS" FT /gene_synonym="tls" FT /locus_tag="BB0115" FT /product="aspartyl-tRNA synthetase" FT /EC_number="6.1.1.12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0709" FT /protein_id="CAE30616.1" FT /translation="MRTCYTGQVCRDHLGQTVTLYGWVNRRRDHGGVIFIDLRDRTGLA FT QIVFDPDNAEAFGTAERLRNEFCISITGLVRLRPEGTANAELASGEVEVLCQQVEILNA FT SVTPPFQLDDDNLSETTRLTHRVLDLRRPQMQHNLMLRYRVSIEVRKYLDQLGFIDIET FT PMLTKSTPEGARDYLVPSRVNAGYFFALPQSPQLFKQMLMVSGFDRYYQITKCFRDEDL FT RADRQPEFTQIDCETSFLNEVEIREIFEGMIRHVFKVVQDVDLPTPFPIMSWTEAMQRY FT GSDKPDLRVNLEFTDMTDVMRDVDFKVFASAATTAGSRVVALRVQGGGEMSRSEIDAYT FT QFVGIYGAKGLAYIKVNDVAKGREGLQSPIVKNLHDAALAELVKRTGAQNGDIIFFGAD FT RAKVVNDAIGALRVKIGHSEFGKKAGLFSGGWKPLWVVDFPMFEYDEEENRYTAAHHPF FT TSPKDGHEDFLESDPGKAVAKAYDMVLNGWEIGGGSVRIHREEVQSKVFRALKIDAEEA FT REKFGFLLDALQYGAPPHGGIAFGLDRIITMMAGAESIRDVIAFPKTQRAQCLLTGAPS FT EVDEKQLRELHIRLRNVEVK" FT misc_feature 116273..116527 FT /note="HMMPfam hit to PF01336, DE OB-fold nucleic acid FT binding domain, score 2.1e-13" FT misc_feature 116573..117919 FT /note="HMMPfam hit to PF00152, DE tRNA synthetases class II FT (D, K and N), score 1.2e-13" FT misc_feature 116870..116923 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT misc_feature 117122..117445 FT /note="HMMPfam hit to PF02938, DE GAD domain, score FT 1.1e-39" FT misc_feature 117836..117865 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT CDS 118125..118985 FT /transl_table=11 FT /locus_tag="BB0116" FT /product="putative endonuclease/exonuclease/phosphatase FT family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0710" FT /protein_id="CAE30617.1" FT /translation="MSLIRVVSYNIHKGRSALGRRESLNDLRLGLYGLRPDLVFLQEVQ FT GRNEVSSVLHAQHESLAAALRLQAAYGRNAIRTGTDHGNALLSRFDILDHENQDISDHR FT LEQRGLLHARIDVGGTEVHCFVVHLGLFAGSRGRQIQALTDRIRQSVPDGAPLLIAGDF FT NDWGDRLAPMFVQQLGLYEVFSHAPRSHGGDLPRLRDSVRRLGNVLRGVPNSVAVLERN FT NQLGMGGAYCPLPPPRTFPAVFPWFRLDRIYQRGFAVRSARVLRGREWARLSDHSPLLA FT ELELP" FT misc_feature 118134..118973 FT /note="HMMPfam hit to PF03372, DE FT Endonuclease/Exonuclease/phosphatase family, score 2.8e-23" FT CDS 118982..120193 FT /transl_table=11 FT /locus_tag="BB0117" FT /product="putative phospholipase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0711" FT /protein_id="CAE30618.1" FT /translation="MKGQIVRLHWTDGNAIRLLQNGGDFFPALCEAIDAARLSVHLETY FT IFLLDRTGRQVLECLESAARRGVKVRVVLDGFGSAGTAEAIRLRITQAGGQCRIFRPEP FT RWLGHLAFSRSRLRRLHRKVAVVDAELAFVGGINIVDDYDDLDPGDDIPAPRFDFAVAV FT QGPLVPHILYAQDLLWVRLNWARLRRHPGDWHRMRLFKPVHADASPAGKLRAALLLRDN FT LRFRQTFEQAYLYGIQHARRDILIANAYFFPGHQFRKSLMQAAARGVRVRLLLQGKPEY FT RMQYFATRALYDRLLRGGIEIYEYMPGYLHAKVAVIDNMATVGSSNLDPFSLLLAREAN FT VVVDDQPFAWDLQERLERAIALGGQFIRPLDYQRRGWLRRCIDVAAYTMLRIGVALTGR FT AGRY" FT misc_feature 119327..119410 FT /note="HMMPfam hit to PF00614, DE Phospholipase D. Active FT site motif, score 2.1e-05" FT misc_feature 119897..119977 FT /note="HMMPfam hit to PF00614, DE Phospholipase D. Active FT site motif, score 0.028" FT CDS complement(120194..121078) FT /transl_table=11 FT /locus_tag="BB0118" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0712" FT /protein_id="CAE30619.1" FT /translation="MPRRDLVDLLALAAVWGGSFLFMRVAVPEFGPAALMELRVGLAAL FT FLLPLVLWRGKPALIARHWKAILVVGTLNSALPFLLYAYAAQSLGAGFLSVANAVTPVW FT GAVIGWLWLGDRLPRMRALGLLISMSGIVVLVWDKLDFHDGGTGPAVLAAISAPVFYGM FT AANWTKRYLGHVDALTNATGSMVAASLVLAPLAIIHWPEQAVSFEAWRATVLLAIVCTG FT AAYIVFFRLIARVGPTAAVSVTFLVPVFGVLWGVWFLDEAVTPRILAGAGVILAGTALA FT LGLVGARRAAAAN" FT misc_feature complement(join(120224..120292,120305..120364, FT 120383..120451,120479..120547,120584..120640, FT 120668..120721,120740..120808,120821..120889, FT 120923..120991,121001..121060)) FT /note="10 probable transmembrane helices predicted for FT BB0118 by TMHMM2.0 at aa 7-26, 30-52, 64-86, 91-113, FT 120-137, 147-165, 178-200, 210-232, 239-258 and 263-285" FT misc_feature complement(120230..120604) FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 8.7e-22" FT misc_feature complement(120668..121039) FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 1.5e-21" FT CDS complement(121094..122527) FT /transl_table=11 FT /locus_tag="BB0119" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0713" FT /protein_id="CAE30620.1" FT /translation="MSAPPTQDPEITTTTQESPHSRRDLLRAMAGVSATVVLVAFDSTI FT VTTTLPRVAAALNGMALYAWVGTAYLLATAASILIFGRLGDMYGRKPLMLVSVSLVALG FT SIACGLAQSMPQLIAFRTLQGIGGGMMIATAFAAPADLFPDAGQRVRWMALVSATFAMA FT SGIGPVLGGAATQALGWRAAFFISPLAAVAALFLLARYFPRIRPAQTASRRIDWVGGLL FT LIVVVGAPLAAIELAFAPGDGAHPRVALALAVAGIAAVALLVPIERRVRSPIFPLRVLA FT GLEPRLLNLAAVAVGATMFILIFYSPLLLQHELDYSPSEAGLLLTPLVAAISFGSIING FT RLFPRQTEPQRLMVFGSCLLAAGSAMMLAVSAGTSAWWIVAAFFVNGTALGFLLPNLTL FT FMQMLSERRDVGVASALVQTTRAMGSAAGTALVGIAISHSSVLDGVRAGLILCVLLSLF FT SAVVAHRVKMKNVAATPAA" FT misc_feature complement(121127..122434) FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.0028" FT misc_feature complement(join(121139..121198,121226..121294, FT 121328..121396,121406..121474,121499..121567, FT 121610..121669,121730..121798,121826..121885, FT 121922..121990,122003..122071,122108..122176, FT 122186..122245,122282..122350,122378..122446)) FT /note="14 probable transmembrane helices predicted for FT BB0119 by TMHMM2.0 at aa 28-50, 60-82, 95-114, 118-140, FT 153-175, 180-202, 215-234, 244-266, 287-306, 321-343, FT 352-374, 378-400, 412-434 and 444-463" FT CDS complement(122578..123147) FT /transl_table=11 FT /locus_tag="BB0120" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0715" FT /protein_id="CAE30621.1" FT /translation="MRIADAQWIPSTPHQTWDALQDPDVLQKCLPGCIKVERRTPTEYE FT LVVRAKVAGLETDYQGEILLSDLDPPHSCTVAFEGKGLASGLAIGTAQVNLSPKDDGTR FT LSYTVAAMAGGKLAELGESTIMKAGNKIVEKFFAAFIDHMAGQPRLAPPPPPPEPEPRG FT LTNSRWSWAVALCVVLVILGYHTFFK" FT misc_feature complement(122584..122643) FT /note="1 probable transmembrane helix predicted for BB0120 FT by TMHMM2.0 at aa 169-188" FT misc_feature 123284..155070 FT /note="O-antigen biosynthetic locus" FT CDS 123421..124398 FT /transl_table=11 FT /locus_tag="BB0121" FT /product="NAD dependent epimerase/dehydratase family FT protein" FT /protein_id="CAE30622.1" FT /translation="MKLEGAKILVIGGAGFIGSFVVAELLKHPVAEVVIYDNFARGKQS FT NIDEYLSDPRCRIYPNGGDIRDIDLLNDAMQGMDGVVHLAAMWLLHCKDFPRTAFHVNI FT EGTFNVLEACVRNNVKRLVYSSSASVYGDAVEVPMTEEHPFNNRNFYGASKIAGEAMCH FT AFHDRYGLSYVGLRYMNVYGPHQDQTAAYTGVIPIMLNKIDANEAPVINGDGTQAYDFV FT YVEDVARCNVLALTSEATDQFYNVGTGVQTSIKELCDTILDMKDSGLQVQYRPYSEDDA FT RRMVQNRIGCPVKASRDLGFTYQYALTEGLQKLIDWRAKNGAQS" FT misc_feature 123421..123489 FT /note="Signal peptide predicted for BB0121 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.606) with cleavage site FT probability 0.564 between residues 23 and 24" FT misc_feature 123442..124386 FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 3.5e-59" FT misc_feature 123832..123918 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 124395..125555 FT /transl_table=11 FT /locus_tag="BB0122" FT /product="DegT/DnrJ/EryC1/StrS aminotransferase family FT protein" FT /protein_id="CAE30623.1" FT /translation="MSGAAAKRSIAISLPMTGEEEWQAVREPLMSGWLTQGPKVAAFEQ FT AFAQRHEVAHALAVTSCTTGLHLALAGLGIGPGDEVIVPSFTWVATANAILYCGGTPVL FT VDVDRETFNIDIAQVASKVTPRTRAVIAVHLFGLCADIDALRAALPASVAIVEDAACAA FT GASWNGRPAGSLGEVGVFSFHPRKSVTTGEGGMVTTNDPELAERMNQMRNHGASISEEQ FT RHHGPRPWILADFDLLGYNYRMTDLQGAVGQVQLAKLDGFIDERARWAQFYREQLGDLK FT WLRLPAEPAGARHGWQSFVTWVDPAHAPMPRNDMMQRLQEQGIATRPGTHAVHMLGYYR FT EQYGYRPEDFPAARDCNDCTMAIPLHNRMTEDDYRYVVAAIRAFGG" FT misc_feature 124434..124451 FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT misc_feature 124437..125540 FT /note="HMMPfam hit to PF01041, DE DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 6.2e-147" FT misc_feature 124536..124565 FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT CDS 125694..127589 FT /transl_table=11 FT /locus_tag="BB0123" FT /product="putative asparagine synthetase" FT /EC_number="6.3.5.4" FT /note="Similar to Mycobacterium tuberculosis putative FT asparagine synthetase [glutamine-hydrolyzing] rv2201 or FT mt2257 or mtcy190.12 SWALL:ASNH_MYCTU (SWALL:Q10374) (652 FT aa) fasta scores: E(): 2.8e-41, 30.4% id in 671 aa" FT /protein_id="CAE30624.1" FT /translation="MIHLDGAAVDPAVLQGMTDAIAHRGPDGEGHWIDGNVGLGHRRLA FT IIDLSPAGHQPMISADSRYVLSYNGEIYNFRELRAELQGEGCQFRSQTDSEVLLHALIV FT WGVERTLSRLNGMFAFAWWDTRERKLLLARDRYGVKPLYFSMQGTTLAFGSEQKAILAS FT AAFRRNLNKAALLEYFTFQNIFTDQTLLEDVHLLPAGHYAYLDCAKERPQLRLTQYWDF FT NFHEPAVPGTDTEYREELSRLFRQAVQRQLVSDVELGSYLSGGMDSGSITAVAAASHPY FT IKTFTCGFDLNSASGIELAFDERSKAEYMSYFFKTEHYEMVLKSGDMERVLPALAWHLE FT EPRVGQSYPNYYAAKLASKFVRVVLSGAGGDELFGGYPWRYYRAVVNNDFEHYVDKYYL FT FWQRLIPNSTLKQVFRPVWSDVSHVWTRNIFRDVFNSHADQLYSPEDYINHSLYFEAKT FT FMHGLLVVEDKLSMAHGLESRVPFLDNDLVDFATRCPVRLKLNNLADVIKLNENEPGHK FT TNKYFEKTRDGKQILRDVMRDYIPSDIAQAEKQGFSAPDASWFKGESMDFVKRTLFSKH FT ARIYEIMDADTVRSLVAEHLSGERNRRLLIWSLLNVESWLAQYLDHGGVAGKGLA" FT misc_feature 125709..126128 FT /note="HMMPfam hit to PF00310, DE Glutamine FT amidotransferases class-II, score 4.8e-21" FT misc_feature 126357..127304 FT /note="HMMPfam hit to PF00733, DE Asparagine synthase, FT score 7.9e-15" FT CDS 127586..128509 FT /transl_table=11 FT /locus_tag="BB0124" FT /product="putative UDP-glucose 4-epimerase" FT /note="Similar to Streptomyces venezuelae FT TDP-glucose-4,6-dehydratase DesiV SWALL:Q9ZGH3 FT (EMBL:AF079762) (337 aa) fasta scores: E(): 4e-12, 27.07% FT id in 314 aa, and to Pyrococcus abyssi UDP-glucose FT 4-epimerase Pab2145 SWALL:Q9V1X1 (EMBL:AJ248284) (307 aa) FT fasta scores: E(): 1.7e-13, 27.85% id in 298 aa" FT /protein_id="CAE30625.1" FT /translation="MSGRIVVTGCHGLVGAEVLASLRHLGREAVGVGRQMSAQRPAQVI FT DLAGSEAAAALRCLRESGRPIDAVVHCAASFPAAFDSAEAVAIAQTNRRIDSTVIDFCH FT EIGARLVYCSSSSVYGRLDSTAVAESRALERATGYVAEKIWAEGEIAKRLPSYATLRLC FT APYGPGQKTRTVLRIFIERALQGAPILYFGTGSREQDFVHVKDIAAAVVAALDRPTVNG FT VFNISGGRPITMRELGMLVSRVIADGRVVVRAADRLDPQDGWRARFDLSNARSRLEWRP FT EMSLEAGIAQWAQVLKEQGDALGAAL" FT CDS 128487..129164 FT /transl_table=11 FT /locus_tag="BB0125" FT /product="putative phosphoesterase" FT /note="Similar to Methanopyrus kandleri diadenosine FT tetraphosphatase apah or mk0804 SWALL:Q8TX71 FT (EMBL:AE010371) (232 aa) fasta scores: E(): 4.9e-14, 32.68% FT id in 205 aa, and to Pyrococcus horikoshii hypothetical FT protein Ph1616 ph1616 SWALL:O59233 (EMBL:AP000006) (233 aa) FT fasta scores: E(): 1.6e-13, 35.21% id in 213 aa" FT /protein_id="CAE30626.1" FT /translation="MRLALLSDVHGNLPVLELCLAEIARRGCHDTVCLGDVFGYFPDGV FT LCLERLKQAGIACLMGNHEAMLLGTLPLTPAQDQVYQLQEQAGRLPADVKQEVGGWLPY FT AVYRAGSLNLLLVHGSPWQPLNEYIYPDADLGRFSHLPYDAVFMGHTHRPFARDVNGRL FT VCNVGSCGLPRDIGKASFAIFDSERNDVEIVRLDIDVPMLRSRYPLVHESVYSVLARGA FT QAH" FT misc_feature 128487..128948 FT /note="HMMPfam hit to PF00149, DE Calcineurin-like FT phosphoesterase, score 3.4e-14" FT CDS 129177..130247 FT /transl_table=11 FT /locus_tag="BB0126" FT /product="conserved hypothetical protein" FT /note="Similar to Synechocystis sp. hypothetical protein FT Slr1616 slr1616 SWALL:P72894 (EMBL:D90901) (341 aa) fasta FT scores: E(): 1.4e-11, 35.77% id in 355 aa, and to FT Xanthomonas campestris hypothetical protein Xcc1931 xcc1931 FT SWALL:AAM41220 (EMBL:AE012297) (347 aa) fasta scores: E(): FT 5e-06, 26.72% id in 363 aa" FT /protein_id="CAE30627.1" FT /translation="MQRISVLVTGVGGGGHGEQILKALRLARTPYHIIGGDMNPFSKGL FT AEVDKPYILPSANDPRYIDALLELCARHDVKAVFHGSEPELKAMSIARARFEQAGVFLP FT INPAAVIDLCMDKARTSEWLRRHGFDVPRTVAVNSLADLGKVDFFPAVLKPSVGGGGSA FT NLFLAQDREELDFLGASLLANIGAYIVQEYVGDTDSEFTVGVLLDMNGQLLNSIAVRRM FT ILSGLSNRIRVKNRSPLSHLGSTLAISSGVSQGDVGPYPEVTKTCERIATELGCRGAVN FT IQCRLVEGRVYVFEINPRFSGTTSLRAMVGYNEPDVLIRKHVLGEEIAPRFSYKSGRVV FT RGLAEVLLSDEPIERV" FT CDS 130255..131418 FT /transl_table=11 FT /locus_tag="BB0127" FT /product="putative C-methyltransferase" FT /note="Similar to Streptomyces rishiriensis FT C-methyltransferase CouU SWALL:Q9F8S9 (EMBL:AF235050) (420 FT aa) fasta scores: E(): 7.6e-07, 25.95% id in 339 aa, and to FT Rhizobium meliloti putative NDP-hexose FT 3-C-methyltransferase protein Rb0640 or Smb21061 FT SWALL:Q92VQ9 (EMBL:AL603644) (415 aa) fasta scores: E(): FT 3.4e-09, 29.64% id in 280 aa" FT /protein_id="CAE30628.1" FT /translation="MELQLMQWQVGDLPFFYRCQPQPSNAPYGLPDSLPFCLEFDSALG FT LIRQSPNTQVEAALERCYQHGSTISGMMDSGGIGQQYARDFLDFIAHHETDLTGKRVLE FT IGCGTGYLLSLLKQKGADVLGIEPGAQGQGGQQRHGVPIIDGFFPHPKAEGKFDLIVAY FT AVLEHIGEPQGFLEKIADSLAPDGVAYIAVPDCAPYIENGDISCLLHEHWSYFDASSLQ FT RLLEVSGFAAAVQPAGFGGSIYARAVRVSHKTKPVNDEIDLAGNGFERFRSLALGAGQR FT LERFLAGPGQAGIYVPGRMINLLASLDSVDLAQVRLFDDNEALTGLYFPGMPNPIEDFS FT GLVERPPARLLIATKSFHFQIADRIEHASVEVPLLAWSDLFLVAAPK" FT CDS 131477..132247 FT /transl_table=11 FT /gene="wbmS" FT /locus_tag="BB0128" FT /product="hypothetical protein" FT /protein_id="CAE30629.1" FT /translation="MAGAAHRLMEARMRRYDNKFARISDIDINQPESWRGRIFLTFDID FT WAADFVLQDTIDLIEGAGVCATWFATHSTPLLENIRRNPLFELGVHPNFNPLLAGAHAE FT GVQEILDRTLELAPGCVSVRSHSLVQATSILNMFGERRLRYDCNILVPWDAGIVLQPWR FT HWTGDMVRVPYLWEDDVACLYDWEFDSTFDYWYQPDGINVLDFHPIHVYMNTESLRRYE FT DSREVHRNPVDLIRWRNTSAGSRTFLQSLLARNI" FT CDS 132244..133173 FT /transl_table=11 FT /gene="wbmR" FT /locus_tag="BB0129" FT /product="putative formyl transferase" FT /protein_id="CAE30630.1" FT /translation="MKFAAIGRHEALLHTIDMLVEAGHQLSYILTAKEAPEYSAGVVDF FT ERKGRQFGVPVYVTPRLTPEWVDKMRQHAVDIAVSLNFPTVIERDAIGVFPFGILNAHG FT GDLPRYRGNACQAWALINAEPEIGLCVHKMVGGELDSGDVIAKDMLPVDHHTRIRTVAQ FT WIEEQTPKLFCAALEQLARDPQYVLYRQTDDPRPPLRCFPRRPEDGRIDWSRTAKDVVR FT HINASGPPYAGAFFEYEAQRYLVYEADWVAGGEYLAIPGQVVARNQDGSIEIACGGDGY FT CRLSSISRVDDEWVLPGFLIKSVRERVF" FT misc_feature 132244..132774 FT /note="HMMPfam hit to PF00551, DE Formyl transferase, score FT 4.3e-09" FT misc_feature 132856..133158 FT /note="HMMPfam hit to PF02911, DE Formyl transferase, FT C-terminal domain, score 1.2e-14" FT CDS 133281..134606 FT /transl_table=11 FT /gene="wbmO" FT /locus_tag="BB0130" FT /product="hypothetical protein" FT /protein_id="CAE30631.1" FT /translation="MARSREERCVLELIKKLIEKEFFVKNRVFIVKYVVGPIFRLRRML FT FPRKAVLYAGQSYYHAWNTSRALRKLGWTADVLNWDMYEGTQIYYHGEDFKFTQDGEKG FT YQEQIDFYLSALWKYDIFHFSNIGGMVFGFPFQLSISQKYHRNFEIEVLRYLGKKIVYS FT HSGCLDGVSQTSFSRWPPMSVCSMCVWRDRPDVCSDEKNLAWGKYRNEMADYQLLFGGN FT HVDYNDDPRVHEEPEFFCTDPEFLHPGLEIPEKFRLDFPPNSVRLYHSVGNFVERTDEQ FT GVNIKSTHVYLPLIRRLKAEGYPVELISVTGVPNRDVRFYQAQADIILEMLSFGFFGAN FT GREALMLGKPLVCFIRPVWLESMRAEIPEYVDELPVVNATPETVYDVVKDLIENPEKRA FT EIGRRSRAFALKWHSTDAAGRRMDRVYRRLLRDQGYDSSRAP" FT CDS 134603..135772 FT /transl_table=11 FT /gene="wbmN" FT /locus_tag="BB0131" FT /product="ABC transporter ATP-binding protein" FT /protein_id="CAE30632.1" FT /translation="MSIAIRRDEEIALSCHGVSKSFVISGEQNIWRMFCALPVRGEVFA FT ALRDVSLEVPRGKIVGILGRNGAGKSTLLRVLGGVYQPTSGTVDVHGQVCGLFEMGGFG FT NRELSGREYATRYLTVMGAPRKDRGDLLADIAEFSELGADFDRKILTYSAGMAARLYFS FT TATAMRHEIYLIDELLSVGDEHFQAKCWIRMRNLLLNGASGILVTHDWVSTLKLCQQSH FT ILERGSIVASGRTDAAVVKYLDLPVPDGALARFCDSDRATWHAVAGEDAVFEFDIESEE FT DIPLVFTYSVELMRIGIGWDIMLLGQRPIGSGNGRRRVQLKVPALPLAPGEYSLTVGLI FT KEKTRAEDEAVICDARGWTTGNGYVLEVSGTLEQGTTILPMEISGWIDD" FT misc_feature 134771..135283 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.5e-21" FT misc_feature 134792..134815 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 135765..136973 FT /transl_table=11 FT /gene="wbmM" FT /locus_tag="BB0132" FT /product="ABC transporter ATP-binding protein" FT /protein_id="CAE30633.1" FT /translation="MTDSDLWIQVSDVRKHYAIGKSGLSDALVSAQSSANTGPGEKIAV FT DGISLTIRNGERLGIVGRNGAGKSTLLHMVAGLSAPTAGKIDVHGRVTAIMTLGLGLRE FT HASGRENIYIDGEVQGKSRVEIDAVIDEIIEFAELGEFIDMPVRTYSTGMKSRLAFAMI FT SCLEPEILIIDEALSAGDAKFSAKATRKIQEICAKGRIVILVSHSMASIQSMCNRCLWI FT DQGKIVMDGLPDQVCKAYIDAVRSEDEAKLLERFRDEASTRFSLDGWDVDALYVLQGDT FT ATQRVLLEAGEDALIRTKIQVPTGCEEAQLVMSVTRLDGLVVTQRRIALDKYTEAGVAR FT VQFAMRPLVLGQGVYRLEIAAELGQALVASRSMIFEVFVRQPPTGGVPMLLYPSEATAS FT LLS" FT misc_feature 135927..136439 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.7e-41" FT misc_feature 135948..135971 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 136980..137771 FT /transl_table=11 FT /gene="wbmL" FT /locus_tag="BB0133" FT /product="ABC transporter integral membrane protein" FT /protein_id="CAE30634.1" FT /translation="MRIFGLERRDIGLIYNFFVLNVRDKYLGSRLGSVWAIANPLCMLG FT IFTFVFGFVYKAKLPGADTTLAYVTWLISGYGPWIALSEALMAGTMSVVSASGLVKNLA FT FKTEILPLAAVATGVVPLTVSLVFLTILLVADGSMPSWHVAWIPLVILLQFFFIAAIAL FT WLSAITVFVRDISFVLPSVLTVLMFATPVFYALDMMPQVVRRVSEFNPLYIIVEGYRQP FT LIHHASPSAWGLAYVFGISLVIFYSGMKAFRRVKGNFEGAL" FT misc_feature 136989..137759 FT /note="HMMPfam hit to PF01061, DE ABC-2 type transporter, FT score 5e-99" FT misc_feature join(137076..137144,137202..137270,137304..137372, FT 137415..137483,137502..137570,137670..137723) FT /note="6 probable transmembrane helices predicted for FT BB0133 by TMHMM2.0 at aa 33-55, 75-97, 109-131, 146-168, FT 175-197 and 231-248" FT CDS 137768..140368 FT /transl_table=11 FT /gene="wbmK" FT /locus_tag="BB0134" FT /product="hypothetical protein" FT /protein_id="CAE30635.1" FT /translation="MTVARYTEASASGLARHFDAVIILTDQPWREDPLDPRYVRARHFA FT GQLPVVVVEPGSVTPTGPLRMSGGIEVVAMTAQPTHEAVDRLTEALHEHSIRRPLFWLE FT DCRAYLELLDCWPNAMTVYRASGGGVAVGAGATVALREAATLFRQAMPRYVHLLVATDE FT HVAATYRRYGEYAGRIEVLADAYGSNFGQYLSVPQEAVPSRSVLYHGPIDDALDYELLH FT QLVHLLPDWKFVFCGAADDQLPAWRGLAAHGNVSHTPTPSAADFGAQCADAMAGILPFN FT MDARWTSRRRAAQALYEAAGLPVLDRAEGECQLQAQAWVAALHSSLAEGRAEAGADHKP FT GSSLLDAASHGAALGAMVEDAYLALLRRPLDHRLNVLVLYDDRWTHIGTVEEHLGAFQK FT YSRHNIFYLPVTRQSPEQDRRLAAEIDLSVFDVVIMHYAVRLSLKDYLPEPMALRIRRF FT TGLKVLFIQDEYDTTNTAKAWIKRLAFDIVYTCVPPAGREYVYPASDFHWTEFLSTLTG FT YVPEDPSLGQYLLPLREREILVAYRGRMLPYFYGSLGWQKYRIGVDVKALAQERGLPVD FT IEVDDTKRIYGTDWYRFLGSARATLGTESGSNVFDFDGNVRSEIERRLAQNPELPFAEL FT YNELLEPLERNIRMNQISPKIFEAIRLRTALVLFEGEYSGALTPGVHYIALSQDYANID FT EVFARLQDLDFLERMTERAYEDIVASGRYSYRSFVEGVDADIEQRWLCGPRARIYAAPV FT LATDRHGAAHVIMPSGTSGWCLSTSILSGTLQREQLAGHMSTAMGNWAQIMLAERKAAR FT RAYLRAQPRRYAGAAYRRSIALARRVWHRIPMPAAFRRQVVRGVRAAKTRLMGR" FT CDS 140424..143060 FT /transl_table=11 FT /gene="wbmJ" FT /locus_tag="BB0135" FT /product="hypothetical protein" FT /protein_id="CAE30636.1" FT /translation="MRRVERLLLVCYYDPNGIETVLDNIGYVKAYSAFHVDILNLFGAA FT SALTRGEGYRLAAYDGVIIHNTISYNPANLESIDRQFVPALSQYEGVKIIFKQDEQYRT FT LAVAEFIGSRAFDLVFTCVDAQERAKVYPPDVVGDRVVFRQMYTGYVTPKLRARTTTGV FT ERDIDISYRGSLQPLYFGRLAYDKRRIGDEVLHAAQGTGLKTDISSRWEDRLMGEDWFR FT FLARSKSTLGVESGASIFDFDGAVEKLCGELEQRRSDFTDEHKYSEWVLQQLEPYEGNV FT YYNQISPRHFEAGAARTLQVMYEGRYSDIFQPWKHFVPLRKDLGNFQQVCEYVLDPRLR FT GEIVDRVYDEIIANPIYSMKHFIGELDQAVAEALERKPNRAAPTRRVPADGRDNVLLLC FT AHPPAADPRIGWVADFAPAGIRVHVMGVADDIAAPLVRQRAQGGLEITQPRGTGADWER FT LALMQDEQGAGLDVLCRLRMLEQMSQAQLNVLVDGGVTAERAYEFNWMCSYLRRTSQAL FT IAAAMNASGYSAIVAADFDSLIAAVVLKRLYGIPVLYDAHEFWPTSLGPATAPWEVALW FT QRLERRLLSEVDKSISVSPQLAAHMSNFYGHSFEAVPNCEPLQAATEPAPQHAPRDECV FT FLFQGNFMPGRGLALLIEAWGRTHPSAILQLRGPDRPYKRELERLAERTGLLGTRIFFP FT EAVAENALVAAAAQADVGLVPYEPTTLNSKYCSPNKLSQYMAAGLPILANRLEFVAQEI FT SLAGCGSVVDFAHGDELVRVVDHYAVDAQLRQREGECGRRYFRQHFHWEAVSAPLYTAL FT ASLSALPGKHESFSINVAGIGDGVGAGVDPRPVWKRTLSRLWGMLPTPAKSALKPMLLK FT LIARFRG" FT CDS 143161..145071 FT /transl_table=11 FT /gene="wbmI" FT /locus_tag="BB0136" FT /product="putative asparagine synthetase" FT /protein_id="CAE30637.1" FT /translation="MCGIFGALWHQGKSVSAIEQQLQVGIARQQHRGPDGHGTWIDPQG FT RLGLAHVRLSIIDLVSGAQPMRGNSGNVITYNGEIYNYIELRRELGEDSFETTSDTEVI FT LRAYEKWGERCVDRLEGMFAFAIWDAKRGEMFVARDRFGIKPFYYACVQGGFYFGSEVK FT ALTPFLNRVETDANALHDYFAFQFCLGEKTLFAGVRQLKPAHCGYVGRDLELKQRQYWE FT VQYDLDWDHTEKYFVEQVREKLQHSVDMHMRSDVEVGAYISGGVDSSLVAAMARHGRRS FT SRFQGFTGKFALGDAFDESRYAQALADEHDILLHQVDITEDDFVNDIAKVIYHLDQPVA FT GPGSFPQYAVSRLAKDHVKVVLGGQGSDEMFGGYARYLIAYWEQCIKGALDGTMHDGNY FT IVTYESIIPNLRTLRNYKPLIQEFMAEGIFDSRDKRYYRLINRSNTFGNVVNWGMFEGI FT ASSFDDFKQIFWGKNVGKESYFDSITHFDFKTLLPALLQVEDRMSMAHGIESRVPFLDH FT KLIELVATVPANVKFQNGELKRLLRVAFQDMLPQAIRERKDKMGFPVPLQVWMRKGGKA FT REFILDTFRSQNARSRAYLAPGFDIEKMMEQEGLFSRNIWAFLSLELWQQQFHDVHRQT FT I" FT misc_feature 143161..143178 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 143164..143610 FT /note="HMMPfam hit to PF00310, DE Glutamine FT amidotransferases class-II, score 2.2e-29" FT misc_feature 143179..143202 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 143812..144714 FT /note="HMMPfam hit to PF00733, DE Asparagine synthase, FT score 3.2e-132" FT CDS 145100..146041 FT /transl_table=11 FT /gene="wbmH" FT /locus_tag="BB0137" FT /product="nucleotide sugar epimerase/dehydratase" FT /protein_id="CAE30638.1" FT /translation="MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH FT PNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAA FT KKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSGLDFVT FT FRLANVVGPRNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATVRAVDGVGHGA FT YHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEF FT TPLKETVAAAVAYFREYGVSGGYTHLKINENK" FT misc_feature 145109..145996 FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 1.4e-15" FT CDS 146046..146978 FT /transl_table=11 FT /gene="wbmG" FT /locus_tag="BB0138" FT /product="nucleotide sugar epimerase/dehydratase" FT /protein_id="CAE30639.1" FT /translation="MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVA FT GLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAAS FT KAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLMMSDVPVVSLRL FT ANVTGPRLAIGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADLSLQEGRPTGVFN FT VSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKVD FT FKDTITGQLAWYDKYGVTDIFSHLSAPKT" FT misc_feature 146052..146936 FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 5.4e-16" FT CDS 146983..148056 FT /transl_table=11 FT /gene="wbmF" FT /locus_tag="BB0139" FT /product="nucleotide sugar epimerase/dehydratase" FT /protein_id="CAE30640.1" FT /translation="MPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDN FT LLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHE FT NNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSM FT SKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKA FT LKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKIN FT EITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLAV FT IEQIMRKHDSALATYGK" FT misc_feature 147025..147996 FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 3.5e-34" FT CDS complement(148416..149597) FT /transl_table=11 FT /gene="wbmE" FT /locus_tag="BB0140" FT /product="putative exported protein" FT /protein_id="CAE30641.1" FT /translation="MIRKSYIIGLLLTLLLGSGLGGYALQRATSATPAATDATAKPAAE FT PATREVEKSNESPPPAGLATPSGYDGGQLPCMQKESMERYACLVRTAGEGAANVTPGGK FT GEAAGASPLTQMFMVTEAMNLIRTLASSARYSWNQSTLGAGFIKPNMAQQEICLDGGFG FT ICGNHQYLFLELMHRLGLEARSVGFWYIDPNANSRASHAAAEVLVDKKWRYVDITWGSL FT WLAQRNDLLSAMSLDEVLAGKGHRFTGTTDVWYIAQRMAKYDPFIYLKGRDLQVTRDGG FT GLLQIKLADQAEKFAHMPNYVGTVPERATMEMQISSNHKHTELQVNISGMAGCKQSRLQ FT IGDEEFDIRPGTILTNTFQQQDRISVQGSDPHCYVVLSSIEPIRSAKRASAPN" FT misc_feature complement(148596..148628) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(149520..149579) FT /note="1 probable transmembrane helix predicted for BB0140 FT by TMHMM2.0 at aa 7-26" FT misc_feature complement(149520..149597) FT /note="Signal peptide predicted for BB0140 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.366 between residues 26 and 27" FT CDS complement(149720..150742) FT /transl_table=11 FT /gene="wbmD" FT /locus_tag="BB0141" FT /product="putative membrane protein" FT /protein_id="CAE30642.1" FT /translation="MAALRPAHTDKAEDFAVESMHEFAERSEIGRGMKLPELTQSSRSA FT IVVATIVASGLLLLGLLTAPALEAQDNRSDQDSARASSRAIKTLAVDTAKLSCLTPALI FT QQIKSDLPNIADAYNECRAEITERTKDMQLDDLGHRVVFATIATNASAPFGSFSAYKLP FT DLLAAPSLTSDNYLLLLGNYLDALHVTPKRSQMRMLGFDGGATGNYAQGMITISGTSLL FT LDPTIGMVVKIGFDDLLSSRRAAARNFVIAYMHDDPGITAVMKRISNSVYNGLYKPSDL FT LYYFFSPEYFMAFNGIIPAGQLKNVHPPLLRFPTPGATSLARTQAQNQQAAPKPAATEN FT " FT misc_feature complement(150545..150613) FT /note="1 probable transmembrane helix predicted for BB0141 FT by TMHMM2.0 at aa 44-66" FT CDS complement(150818..152704) FT /transl_table=11 FT /gene="wbmC" FT /locus_tag="BB0142" FT /product="putative glutamine amidotransferase" FT /protein_id="CAE30643.1" FT /translation="MCGVLGAWWRHHDEHEDARFAAGLRKLAHRGPDDRGSEHFAAPHG FT RLSLGHTRLAVIDLSAAGHQPMHADADRLAVVFNGEIYNYRELRSELRQIGAIFRGDSD FT TEVLLAAWQHWGVAALRRFKGMFAFALYDRRQQTLTLARDAFGIKPMYYHAAPERLLFG FT SELPAVQALLPHPPRLNWQRAYDYLAYGQYDQPPDTFIAGIRQLPAGHLLTLDLRTGRA FT GEPMAWDDPASQECRPIGFQEAAEELRARFLDNVRLHLRSDVPIGAALSGGIDSSAIVC FT AMRWLEPDLPIQTFSFISDDTHRSEERWVDLVNQHCGATGHKIHIAPHELLDDLDDLIR FT VQGEPVGSTSIYAQYRVFKLAREHGVVVTLDGQGADELLGGYGGYPTERLASLLETGRL FT GAAARLLRQQGRGAPARLLQAAALAAGGRHLANLRHATGRQHAPAWLDAQVLRDQGVTM FT REPAHAWAAATPLRGRRLVNELAHALYHRGLGALLRHGDRNSMRFSVESRVPFLTQDLA FT EFALSLPERYLVSDAGQTKHIFRKAMRGIVPDSILDRDDKIGFATPEQQWMQATAPQMR FT QWLVDAADIPFLRNAEVTAQFDAMIAGATPFSWQAWRWVNFQRWMQHATVLP" FT misc_feature complement(151034..152032) FT /note="HMMPfam hit to PF00733, DE Asparagine synthase, FT score 6.9e-12" FT misc_feature complement(151406..151438) FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT misc_feature complement(152243..152701) FT /note="HMMPfam hit to PF00310, DE Glutamine FT amidotransferases class-II, score 1.4e-19" FT misc_feature complement(152687..152704) FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT CDS 152766..153866 FT /transl_table=11 FT /gene="wbmB" FT /locus_tag="BB0143" FT /product="hypothetical protein" FT /protein_id="CAE30644.1" FT /translation="MSDAIMAGLFWLGDMRIAYLTFELPDTRTGVGKKILAQGNFWRAA FT GNQVRNFVLRAPAFPALDEVEFLCQRRPGGPMVAAMLSGARIGAALEAWRPDVIYARQM FT LWWPGALRALRAAPLIIEYNSIARNEYRSSSKLKYLLEITSSRYFPRQARGIVAVTPEL FT LATVPATQAEGIVIGNGYDFAKAVPRAAPDNARARLLLVGSPGQPWLGADKVARMAALM FT PEYDFDVVVPGLKLAGPPNLYCHGALFDADLAARYAATDVALGTLALHRKGMAQAAPLK FT TREYLAYGIPVVGGYDDPDLDGAAYWLNIGNAEDNIDRNIENIRNFVTQWRGRLPDRGD FT IESRLGFSGKECARLDFFERVRQHAG" FT CDS 153856..155073 FT /transl_table=11 FT /gene="wbmA" FT /locus_tag="BB0144" FT /product="putative glycosyl transferase" FT /protein_id="CAE30645.1" FT /translation="MPVRRIALITNGYPDIYARERSFILPELKALLAYGHQVTLVPVRE FT VTEVDPDLPDGVAVERRLAHLYRPWQLPATVLWMMFRGYFWREAWQCLGRGRLRYLGHF FT FKESVRATNTLRMQSALRDYDVLYTYWFKGESTGISLMPGTHARRLTRAHGYDLYEDRP FT NNEGYIPYREMTLPRLDRVVVLSEEARAYLEQRYPASVGRTVVSPLGVAHESDENPGPE FT ADRIVLVSCSYPTPNKRLPLIGQLAAAVACARPSVKVVWMHFGCRREEAGLPVDFAGPP FT NLSVQFAGEAPNEHIRRWYATRPVSFFVNLSQSEGQPVSIMEAMAFGIPVMATGVGGIP FT EMLRHGGGMTLPEQPDVNAVAREMLSLLDDPSRYQAMREAARETQLAYFNTSANHRTLA FT DLIGEF" FT misc_feature 154486..155007 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 3.4e-10" FT misc_feature 154579..154611 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(155091..156965) FT /transl_table=11 FT /gene="bplL" FT /gene_synonym="wlbL" FT /locus_tag="BB0145" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) bplL" FT /protein_id="CAE30646.1" FT /translation="MTLPYAIRRLFVDLPRPFKQMLAIVLDAVILLGAFHLALWLRFEL FT FFLTDQYLFLSLLACAGGIAALAAFGVYLYILRYMSERVLAAILGGIVVSVMVVTAGNT FT FLQLATISRGVLVLYAALALVGLIGVRLIARKLLFPADHHMADPRTPVLIYGAGGAGSQ FT LAMALRAGPHYRPVAMLDDDKRKHRLVVNGLRVYPPEQLPKLIDRHNIRQLLIAMPSAP FT PKQIRSIVEAAEPYRLRIRLVPSMRELIDPTNGVRLRDVQVEDLLGRDPVAPIDTLLGR FT CVTDRVVMVTGAGGSIGSELCRQILALRPRKLVLFEIAEPALYAIEQDLRQRIGERNIE FT IAGVLGSVRDAAHCLAQLQEHGVQTIYHAAAYKHVPIVEHNVSEGIRTNAFGTLNMAET FT AIQAGVLDFVLISTDKAVRPTNVMGASKRLAELILQAHAQIQDKTRFSMVRFGNVLGSS FT GSVVPLFRRQILEGGPITLTHPEITRYFMTIPEAAQLVLQAGAMGESGSVFVLDMGEPV FT LIRELAERMVRLYGLTVKNSDQPDGDIEIRITGLRPGEKLYEELLIGEDSRETLHPRIM FT RATEYSLPYETLMGQLRMLDRSLQMCSPRQAAELLGQIVREYASVTYA" FT misc_feature 155091..169763 FT /note="Lipopolysaccharide biosynthesis locus" FT misc_feature complement(155115..156701) FT /note="HMMPfam hit to PF02719, DE Polysaccharide FT biosynthesis protein, score 0" FT misc_feature complement(155436..155471) FT /note="PS00135 Serine proteases, trypsin family, serine FT active site." FT misc_feature complement(join(156453..156512,156570..156638, FT 156648..156716,156735..156803,156846..156905)) FT /note="5 probable transmembrane helices predicted for FT BB0145 by TMHMM2.0 at aa 21-40, 55-77, 84-106, 110-132 and FT 152-171" FT CDS complement(157014..158261) FT /transl_table=11 FT /gene="bplJ" FT /gene_synonym="bplK" FT /gene_synonym="wlbjK" FT /locus_tag="BB0146" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) bplJ" FT /protein_id="CAE30647.1" FT /translation="MCAVALGFSGSSIYVLDPLRPFHFGAALILALIALDRQWRRAVLD FT SALTRWLAATAAVLLIQLLWVEHTDRYLRFLAFLLTGVCYTVLADALVRRRVDFAEGLY FT PIVLYWLITAAMPIYDAWTGSGRFRMSYPLTGGVWYNINDMATALVFANLIWLLIKRKL FT SFPLYLTCWFYALAMNRRTILLAASVLGLLYLLGYARRLKHGNRALLAGALLATSAAAL FT VLHHGNFQFGTLPSLAPRAQVGAGAVLTPASTAAADETIQSAQAGEDMPPVDEIGVIAN FT NGDHSTAYRVQLLLDMYAQIRDMPWWQWAFGLGLGQLNLMWPATDAQWASPHFFWLEMF FT FHLGLLWVAFLGWLLVRSDSTGRICLITAAIAGMAPSSMIYLQPFWFLVGVCVAVLPQK FT NGAPSRPAAFPQHASQ" FT misc_feature complement(join(157104..157172,157191..157259, FT 157287..157346,157569..157637,157665..157718, FT 157785..157853,157896..157964,157983..158051, FT 158064..158123,158157..158225)) FT /note="10 probable transmembrane helices predicted for FT BB0146 by TMHMM2.0 at aa 13-35, 47-66, 71-93, 100-122, FT 137-159, 182-199, 209-231, 306-325, 335-357 and 364-386" FT CDS complement(158311..159015) FT /transl_table=11 FT /gene="bplI" FT /gene_synonym="wlbI" FT /locus_tag="BB0147" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) bplI" FT /protein_id="CAE30648.1" FT /translation="MMTLLPLLVIASYSIIHLLEYLSYYARVAGRMAGKPVTGYAIQNA FT TTTVTRFFYLALMPLLGFLVDKQVPTSLYLQMGLAAMFGAALLSLLGYWLRYSWIALLT FT NAVRKRAGQPPLRVEEIRTALEAPASLPKKRIALLAAIVFLCYCLGVLLSYFFALVFHE FT YRSTISQLSGLINGVATVLLTFVLEPRIAGIVDARPTHDVYHAIQAMLNGRLIAIGLLA FT PALFFGVCIGFV" FT misc_feature complement(join(158317..158385,158446..158514, FT 158542..158610,158716..158784,158821..158877, FT 158938..159006)) FT /note="6 probable transmembrane helices predicted for FT BB0147 by TMHMM2.0 at aa 4-26, 47-65, 78-100, 136-158, FT 168-190 and 211-233" FT CDS complement(159012..160118) FT /transl_table=11 FT /gene="bplH" FT /gene_synonym="wlbH" FT /locus_tag="BB0148" FT /product="putative glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) bplH" FT /protein_id="CAE30649.1" FT /translation="MLGPARSIHTIRWANGLALRGLQVHLLSLETPDLSLYDERIVQYR FT LPWRAPLGYFLAAPRLRALLKRIDPDLLNVHYATGYGLLARRARFSPVLLSAWGSDIYE FT FPNSSTWHKALLQRNLDHATALAATSHAMQREMRGLTRRPIFVTPFGIDEALFQPAQSV FT QAPAADGPIVIGTVKALETHYGIDTLIQAFALLRQALAASQPGMAERLVLRIYGAGSQL FT QRLRAQAQAAHIANQVEFKGRIPHAEVPEALRALDVYVALSRMDSFGVAILEACSCALP FT VVVSNADGPAEVVVDGKTGYIVAREDAHAAADRLQELVLNPELRQRLGAAGRARVLSEY FT TWSKSLDMMLDAYTETARLYRATQPASV" FT misc_feature complement(159114..159650) FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 3.7e-49" FT CDS complement(160380..160973) FT /transl_table=11 FT /gene="bplG" FT /gene_synonym="wlbG" FT /locus_tag="BB0149" FT /product="probable sugar transferase" FT /note="ortholog of Bordetella pertussis (BX470248) bplG" FT /protein_id="CAE30650.1" FT /translation="MIKRLFDVVCSGLGLLALLPLLALIAIAIKLDSPGPVFFRQERVG FT KGGVPFRIHKLRSMSVRQDPQAGQITVGADPRITRVGKWIRKWKLDELVQLIDVFTGSM FT SLVGPRPEVPRYVVLYPDALRNLILSVRPGITDPASIRFRNENEILGQSSDPERTYREI FT ILPEKLRIQAEYVQTRTFLGDLKIIAHTLLAVAR" FT misc_feature complement(160386..160967) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02397, DE Bacterial sugar FT transferase, score 5.3e-15" FT misc_feature complement(160887..160955) FT /note="1 probable transmembrane helix predicted for BB0149 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(160890..160973) FT /note="Signal peptide predicted for BB0149 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.704 between residues 28 and 29" FT CDS complement(160970..162202) FT /transl_table=11 FT /gene="bplF" FT /gene_synonym="wlbF" FT /locus_tag="BB0150" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) bplF" FT /protein_id="CAE30651.1" FT /translation="MPPAARLSLLQRSSTMSDFLPFALPDIGEAEIQAVTESMRSGWLT FT TGPNAREFEREFAAYMGADVEAVAVNSATAGLHLALEAIGVGPGDEVITTTHTFTASAE FT VARYLGAEPVLVDIDPATLCISPAAIERAITPRTRAIVPVHYGGLSCDMDSILEIARKH FT GLKVIEDAAHALPASWQGRRIGSLESDLTVYSFYATKTLATGEGGMVVTRDPALAKRCR FT VMRLHGIDRDAFDRFTSKKPAWYYEIVAPGFKYNMTDTAAAMGRVQLQRVQQMRDRRAQ FT IAAAYDQAFADLPLTLPPSPGRTPGVERAAHRDDDEHSWHLYAIRIHPQAPLKRDDFIV FT RMTENGIGCSVHYVPLHLQPYWRDRYGLTPDMYPHSQAAFEGMASLPIYSRMTDADVQR FT VIASVRQLLRP" FT misc_feature complement(160988..162130) FT /note="HMMPfam hit to PF01041, DE DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 2.8e-201" FT CDS complement(162220..163479) FT /transl_table=11 FT /gene="bplE" FT /gene_synonym="wlbE" FT /locus_tag="BB0151" FT /product="probable glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) bplE" FT /protein_id="CAE30652.1" FT /translation="MNILLINHYAGSPRYGMEFRPYYFGREWIGHGHQVKVAASTISHI FT RARAPQAGGRLTRENVDGIEYLWYATLPYQGNGARRLLNMLQFSARLYGLRRDLGGWRP FT DIVIASSTHPYDVLPAARLARQTGARLVFEVHDLWPLTPRLLGGFKAWHPMIASMQYAE FT DYAYRHADLTVSMLPCALPYMRERGLDPRRYAHVPNGVPVAEYSSPDFDNPDYLRVRAQ FT IRQLREQCDFVLAYAGTHGHANALDMLLQAMARLRDQPIGLLLLGDGPDKPELKRLAGQ FT LGLRHIAFADPVPRPAVQAVMADIDAAYIGLRRSPLFQFGVSPNKLFDYMLSACPVVQS FT IESGNDIVADARCGVSVPAEDPAALAAALHGLRALPAAERQAMGRRGRDYVLARHDYPV FT LAQQFLDAVQSVTPRRAASR" FT misc_feature complement(162310..162828) FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 2.6e-05" FT CDS complement(163503..164489) FT /transl_table=11 FT /gene="bplD" FT /gene_synonym="wlbD" FT /locus_tag="BB0152" FT /product="UDP-N-acetylglucosamine 2-epimerase" FT /note="ortholog of Bordetella pertussis (BX470248) bplD" FT /protein_id="CAE30653.1" FT /translation="MVHTGQHFDANMSDVFFDELGMQTPAHQLDIHGGGHGDMTGRMLV FT ALEQVMQAEKPDVVLVYGDTNSTLAGALAAVKLHIPVAHVEAGLRSFNLRMPEEVNRIL FT TDRISRWLFTPTDSATRHLAAEGQSGEKVVQVGDVMYDVALHHGARVTAEGRALAAHGL FT KPGGYVLATIHRAENTDDAQRLTTIVRALQALAAERQVVWPLHPRTRGILARLGLLDEL FT ASTVTLLEPVGYLDMVQLEKYAALIATDSGGVQKEAFFHRIPCVTLRDETEWTELVDAG FT WNRLAPPVSSAVVAQAVQDALREQPRDVQPYGDGQAARRIVDALAAH" FT misc_feature complement(163512..164456) FT /note="HMMPfam hit to PF02350, DE UDP-N-acetylglucosamine FT 2-epimerase, score 1.2e-185" FT CDS complement(164599..165699) FT /transl_table=11 FT /gene="bplC" FT /gene_synonym="wlbC" FT /locus_tag="BB0153" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) bplC" FT /protein_id="CAE30654.1" FT /translation="MQFIDLKTQYQALRDTINPRIQAVLDHGQFIMGPEVKELEAALCA FT YTGAKHCITVASGTEALLISLMALGVKAGDEVITTSFTFVATAEVIALLGAKPVFVDVE FT PDTCNIKVSEIEAKITPRTKAIIPVSLYGQCGDMDEVNAVAARHGLPVIEDAAQSFGAT FT YKGRKSCNLSTIGCTSFFPSKPLGCYGDGGALFTNDDELAQAMREIRVHGQSGRYYHTR FT IGVGGRMDTLQCAVVLGKLERFDWEIAQRIKIGARYQQLLADLPGGACTVTVRPDRDSV FT WAQFTVMVPNREAVIAQLKEAGIPTAVHYPRPIHAQPAYEQYAEGAGATPVSDDLAARV FT MSLPMHPDLDEATQDKIVAALRQALN" FT misc_feature complement(164614..165669) FT /note="HMMPfam hit to PF01041, DE DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 4.1e-180" FT CDS complement(165703..166278) FT /transl_table=11 FT /gene="bplB" FT /gene_synonym="wlbB" FT /locus_tag="BB0154" FT /product="probable acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) bplB" FT /protein_id="CAE30655.1" FT /translation="MTTIHPTAIVDEGARIGANSRIWHWVHICGGAEIGAGCSLGQNVF FT VGNRVRIGDRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKNEYRDTLVR FT QGATLGANCTIVCGATVGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQLDL FT PLAGNGQARCPHTGDLYILENGVCRLGE" FT misc_feature complement(165718..165744) FT /note="PS00572 Glycosyl hydrolases family 1 active site." FT misc_feature complement(165910..165963) FT /note="HMMPfam hit to PF00132, DE Bacterial transferase FT hexapeptide (four repeats), score 0.47" FT misc_feature complement(166081..166134) FT /note="HMMPfam hit to PF00132, DE Bacterial transferase FT hexapeptide (four repeats), score 0.55" FT misc_feature complement(166135..166188) FT /note="HMMPfam hit to PF00132, DE Bacterial transferase FT hexapeptide (four repeats), score 0.14" FT misc_feature complement(166189..166242) FT /note="HMMPfam hit to PF00132, DE Bacterial transferase FT hexapeptide (four repeats), score 0.25" FT CDS complement(166282..167334) FT /transl_table=11 FT /gene="bplA" FT /gene_synonym="wlbA" FT /locus_tag="BB0155" FT /product="probable oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) bplA" FT /protein_id="CAE30656.1" FT /translation="MSSLPITDRKIRFGLVGCGRISKNHIGAIAQHGDRAELVEICDTN FT PEALQAAEAATGARPFSSLSDMLAQGNADALVLATPSGLHPWQAIEVAQAGRHVVSEKP FT MATRWEDGKRMVKACDEAGVRLFVVKQNRRNATLQLVKKAIEQGRFGRIYMVTVNVFWT FT RPQEYYDAARWRGKWEWDGGAFMNQASHYVDLLDWLVGPVESVYAYTATLARRIEAEDT FT GVAALRWRHGAMGSINVTMLTYPQNLEGSITILGEKGTVRVGGVAVNRIDEWKFAEPHP FT DDDKIREANYETTSVYGFGHPLYYDNVINCLRGDCEPETDGREGLQSLALLTAIYRSAR FT DGVRIPLPLD" FT misc_feature complement(166564..166911) FT /note="HMMPfam hit to PF02894, DE Oxidoreductase family, FT C-terminal alpha/beta domain, score 1.2e-28" FT misc_feature complement(166945..167304) FT /note="HMMPfam hit to PF01408, DE Oxidoreductase family, FT NAD-binding Rossmann fold, score 7.9e-46" FT CDS 167510..168472 FT /transl_table=11 FT /gene="rfaC" FT /gene_synonym="waaC" FT /locus_tag="BB0156" FT /product="probable heptosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0094" FT /protein_id="CAE30657.1" FT /translation="MVHMLPAISDIARYVPDTQIDWVAEEAFADIPKWHPAVNEVIKVA FT HRRWRKAWWSEPVRQERRALAERLRSVSYDVVLDMQGLLKSAWLVRQTRGVRHGLDWRS FT AREPLASLFYNVRHRVEFWQPAVVRQRKLAALTFGYNYAGSPDFGLQAFGRAAQADDAP FT ADPGRRMLHLAADRGYAVIMPSASRDDKLWPEDDWRAVFRRLQDAGCALRLLAGNEQEA FT ERARVLVAGMEGVEVLPRMDLTSVAQVLAGARLMVGLDSGLTHLSAALGRPTIGIYRAS FT TPVRTPLVGPSYTASLGDRGASPSREAVLASVEQALAAA" FT misc_feature 167693..168451 FT /note="HMMPfam hit to PF01075, DE Glycosyltransferase FT family 9 (heptosyltransferase), score 5.9e-110" FT CDS 168474..169766 FT /transl_table=11 FT /gene="kdtA" FT /gene_synonym="waaA" FT /locus_tag="BB0157" FT /product="3-deoxy-D-manno-octulosonic-acid transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0095" FT /protein_id="CAE30658.1" FT /translation="MGRGVYTLALRGLAPLIWLWMWRRARRAGGQWELFAPARFGRAGA FT RAPAPLAAPVWVHAVSLGETRAAQPLVQALLERGLPVLLTHTTATGRAEGERLFGAAIG FT RGQLQQAWLPYDFPGATRRFLARHAPRCGLLIEREVWPNLLAAARAQGVPMALVSARFS FT ASSLRQAGWLGQALREALAGLGRVLAQTDEDGARLCQAGANAYTVTGSLKFDVALPEAQ FT LRVGHAWAGATGRPVIALASTREGEDAMFIEAIGALQAHRAATPRPLILLIPRHPQRFD FT EAAAQLQAAGLAYARRSAGSGEPGPHIDVLLGDTLGEMPFYYAAADVAIVGGSFARLGG FT QNLIEACAAGTPVIVGPHTFNFKDAARDAIAAGAALRAPDARTALDWALQLLAEPARRQ FT AMSEAARAWTAAHAGATRRTLDALEDWLAPR" FT CDS complement(169792..170628) FT /transl_table=11 FT /locus_tag="BB0158" FT /product="putative exported protein" FT /protein_id="CAE30659.1" FT /translation="MKIKQLVTQTLLVCTVSAVTSTAVIYLSKKIDARRQTAAQIVDAR FT ERALLHEFASKVTNFEEFRFGYGPGRLSSPCLDKAVEQIRDAGGDVRGAFAECKSSFAA FT KLPVARKGMSEGDLLAAFIAVVVNRLAPYGSSTASTPAEILAAKTLNCSQHSIMTAALI FT ARYVPDAEVIEKVGLDGGHIGNHALVYYQSKTARMVLDGTSAMITFASIDDILAGKLVS FT TYDIYDFFQSTDESLEIFRRNVRGAYRLGAVRPEHVIYRESVPLLAKPAPLQANPS" FT misc_feature complement(170560..170628) FT /note="Signal peptide predicted for BB0158 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.958) with cleavage site FT probability 0.510 between residues 23 and 24" FT CDS complement(170799..170954) FT /transl_table=11 FT /locus_tag="BB0159" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0096" FT /note="Previously sequenced as Bordetella bronchiseptica FT putative secreted protein Bblps1.35C SWALL:O88004 FT (EMBL:AJ007747) (51 aa) fasta scores: E(): 5.1e-20, 100% id FT in 51 aa" FT /protein_id="CAE30660.1" FT /translation="MRILFLLIVAANLWVYALGQGWLGLRPADEGRDAARLNQEMKADQ FT VKVLRP" FT misc_feature complement(170880..170948) FT /note="1 probable transmembrane helix predicted for BB0159 FT by TMHMM2.0 at aa 3-25" FT misc_feature complement(170898..170954) FT /note="Signal peptide predicted for BB0159 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.879) with cleavage site FT probability 0.698 between residues 19 and 20" FT CDS complement(170980..171783) FT /transl_table=11 FT /gene="baf" FT /locus_tag="BB0160" FT /product="Bvg accessory factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0097" FT /protein_id="CAE30661.1" FT /translation="MIILIDSGNSRLKVGWFDPDAPQAAREPAPVAFDNLDLDALGRWL FT ATLPRRPQRALGVNVAGLARGQAIAATLRAGGCDIRWLRAQPLAMGLRNGYRNPDQLGA FT DRWACMVGVLARQPSVHPPLLVASFGTATTLDTIGPDNVFPGGLILPGPAMMRGALAHG FT TAHLPLADGLVADYPIDTHQAIASGIAAAQAGAIVRQWLAGRQRYGQAPEIYVAGGGWP FT EVRQEAERLLAVTGAAFGATPRPTYLDSPVLDGLAALAAHGAPTA" FT misc_feature complement(171175..171780) FT /note="HMMPfam hit to PF03309, DE Bordetella pertussis Bvg FT accessory factor family, score 3.3e-83" FT CDS complement(171780..172622) FT /transl_table=11 FT /gene="birA" FT /locus_tag="BB0161" FT /product="putative biotin protein ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0098" FT /protein_id="CAE30662.1" FT /translation="MSAEVRSLSLPEPAALARAIAARLPAFRDISWVGSTGSTNADLLA FT RARAGGGARPCLLGAHLQESGRGRAGRPWQNRVGAALMFSCAFDVDLPPSQLPALSPLA FT GMAACEALRQLVGQPAGLLVKWPNDVQWHDAKLAGVLVESVRNPAGTGHAVVIGMGLNL FT HGGDALSQALQRSVADWNDVAGPGEKGPDAAADLVATVARAWQDAAHTLQQEGFGAFGA FT RFARVDALAGRPVNVIDRGEILYTGAASGVDDHGRLLVQAADGMRPVSVGEISIRPQA" FT misc_feature complement(171792..171935) FT /note="HMMPfam hit to PF02237, DE Biotin protein ligase C FT terminal domain, score 2.8e-15" FT misc_feature complement(172098..172541) FT /note="HMMPfam hit to PF03099, DE Biotin/lipoate A/B FT protein ligase family, score 2e-29" FT misc_feature complement(172296..172328) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 172715..173851 FT /transl_table=11 FT /locus_tag="BB0163" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0099" FT /protein_id="CAE30663.1" FT /translation="MPMPSLPSTAGAATLPLTLDHGVCHVSGDWSMQALAAPGEVERRR FT AALARVDPDQRWDLRGVERLDTIGAHLLWGAWGQQLPERVRWSDGQREVFQTLQRNRGE FT ALPAPAPADRWGWLRAIGDAVFDAGRNGRALIIMFGQLVLDLGAFLRRPSRGPWREISA FT QVYRTGAQALGITALVGFLIGVVLSYLSAQQLQMFGADRFIVRLLGVSIVRELGPVLAA FT ILVAGRSGSAITAQIGVMRVTQELDAMLVMGISHGQRLILPRVIALAITMPLLVVWTDA FT MALLGGMLAAQMQLGVSAQWFLTSLPDAISLTNYWIGMFKGVSFGVLIALVACHFGLCI FT QPNTESLGRGTTTSVVTSITGVILVDALYAVIFSSIGI" FT misc_feature 172715..172822 FT /note="Signal peptide predicted for BB0163 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.737) with cleavage site FT probability 0.723 between residues 36 and 37" FT misc_feature 173096..173836 FT /note="HMMPfam hit to PF02405, DE Domain of unknown FT function DUF140, score 2.2e-58" FT misc_feature join(173222..173290,173534..173602,173660..173728, FT 173765..173833) FT /note="4 probable transmembrane helices predicted for FT BB0163 by TMHMM2.0 at aa 170-192, 274-296, 316-338 and FT 351-373" FT CDS 173851..174690 FT /transl_table=11 FT /locus_tag="BB0164" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0100" FT /protein_id="CAE30664.1" FT /translation="MGSVAQQNLFSATDLAVAPVIAVRGLRTAFGDHVVHDNLDLSVYP FT GEILALVGGSGTGKTVLLRQIIGLERPAAGTIEVLGRRVQELEPAERRRLSHRWGMLFQ FT AGALFSSLSVFDNVALPLRELRTVPEDLVCDVVMCRLAMVGLTSKDADKRPADLSGGMV FT KRVALARALSLDPELLFLDEPTAGLDPLRSDEFVDLVRSLHRQLGFTVVMVTHDLDTLL FT ALATRVAVLADKRVIVCDTVREVLKVDHPFIRSFFLGERGRRALGDLAPKETGNGKP" FT misc_feature 173986..174552 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 3.8e-57" FT misc_feature 174007..174030 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 174067..174120 FT /note="PS00216 Sugar transport proteins signature 1." FT CDS 174677..175624 FT /transl_table=11 FT /locus_tag="BB0165" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101" FT /protein_id="CAE30665.1" FT /translation="MENRSHALLAGLFTLALLVAAALVAIWVGRDRAALKPYVIVSATS FT VSGLSAQSTVRYQGVPVGKVQSLGFNPDKPAQVRISIGVAPDTPITESTWAELGVQGVT FT GLGNIELRDDGTSTRRLASSAAMPATIPLRPGFFQRFEQRGGEILHNVEQVSARLERLL FT SNENVQATTATLQNIAAITTDLRQAATELRPALAQVPPLVDSLQAMSRNTGQAAQEIAG FT LAQAARQALARLDAPDGPLAMATRSMRDIAWAAARLDAQTLPAVSGMASSIDSAARSAT FT TTLRRVGDTPQSLLFGPPPTVPGPGEPGFAGFGR" FT misc_feature 174677..174751 FT /note="Signal peptide predicted for BB0165 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.352 between residues 25 and 26" FT misc_feature 174704..175108 FT /note="HMMPfam hit to PF02470, DE mce related protein, FT score 0.00031" FT CDS 175625..176230 FT /transl_table=11 FT /locus_tag="BB0166" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101A" FT /protein_id="CAE30666.1" FT /translation="MDMKKAIIVLSALLLAGCGAGRMAAPPALFDLGADVAATPALPAR FT QPIVLAFEAVPYLSDTGVIWRVGDSASPHAYARSRWASAPAELVRQRLVERLSHQGPVL FT GAGMGAGLAQVQVTLTRFEQVFAADGQASVGHVAMQAVLLQDRQVVGQVRIAREAPAAT FT QDAAGGVQALRQATDAAADELAGWLAGRVAAAGVRAGS" FT misc_feature 175625..175696 FT /note="Signal peptide predicted for BB0166 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.988 between residues 24 and 25" FT misc_feature 175643..175702 FT /note="1 probable transmembrane helix predicted for BB0166 FT by TMHMM2.0 at aa 7-26" FT misc_feature 175646..175678 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 176260..176913 FT /transl_table=11 FT /locus_tag="BB0167" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101B" FT /protein_id="CAE30667.1" FT /translation="MSARTETQVFTGAAGNIDCAIDWPAHAPRGWALVLHPHSLQGGAR FT DNKVVTTVARACVQHGLAAVRPNFRGVGESAGEFDKSIGETEDMLALVAQVRERYPEFA FT ASPWVLGGFSFGTAVAAQTYAALAAAGDPSLPRALMLMGPAVNRFERSATEVPADTLLV FT HGEADDVVPLAEALEWARPRSLPVVVVPGASHFFHGKLLVLRQLVQDRLRIALD" FT CDS 177046..178302 FT /transl_table=11 FT /locus_tag="BB0168" FT /product="putative penicillin-binding protein precursor" FT /EC_number="3.4.16.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0102" FT /protein_id="CAE30668.1" FT /translation="MKTLPDTAIAPVVLSRRVLASAVLAAMLAAAAPAGAQQQAAPATP FT VAAAAPAAGGAVGAVGDLAAVPVPTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKI FT MTAYVVFNALQEKRLTLEQQVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGND FT ASVALAEAVGGSESAFAALMNQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAAHL FT ISDYPDYYHYYKQKSYTYNKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGD FT RRILTVLVGADSEATRAEESLKLLNWSFQNFDTVKLYDQSQPGLDARVWEGKVENVKLG FT PPNPVWLAVPRGKAAEIKPVAQRTDPLVAPLTKGQQVGTLQLTLDGKTLRVEPLVVQED FT VERAGFFGRMADTVKRWFQ" FT misc_feature 177046..177153 FT /note="Signal peptide predicted for BB0168 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.908 between residues 36 and 37" FT misc_feature 177220..177987 FT /note="HMMPfam hit to PF00768, DE D-alanyl-D-alanine FT carboxypeptidase, score 4.2e-110" FT CDS 178305..179249 FT /transl_table=11 FT /locus_tag="BB0169" FT /product="probable class IV aminotransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0103" FT /protein_id="CAE30669.1" FT /translation="MKAAPQAARRHRRAAMPAPILSKELPMIPGMPGDSQVYLNGEFTR FT LDEAKISVLDRGFIFGDGIYEVVPVYDGKVFRMTEHLNRLDRSLAALRIAAPMDRAGWE FT SVIAGLIARSAQPTCIIYLQVTRGVCKRDHAFPTEPITPTVFGMAAAFSPPGAAQRTQG FT LSAIAIDDERWLHCEIKSVSLLGNVLAKQQAVDAGVDEVVQFRDGWLTEGSSTNIWVVS FT GGKLLAPPKNNLILEGIRYGLMGELAEAAGLPFEARRISREEVLAADELMLTSATKEVL FT PIVRLDGKAVGAGKPGPVYEQLRAGYDARIAAL" FT misc_feature 178422..179228 FT /note="HMMPfam hit to PF01063, DE Aminotransferase class FT IV, score 7.7e-53" FT CDS 179325..179600 FT /transl_table=11 FT /locus_tag="BB0170" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0104" FT /protein_id="CAE30670.1" FT /translation="MHNIPPEESLIEYPSDFPIKVMGKQHPEFAQTLTEVVLQFDPAFD FT PASVEMRPSKGGNYMGLTFTVRATSREQLDSLYRALHGHPMVSIVL" FT CDS 179608..180270 FT /transl_table=11 FT /gene="lipB" FT /locus_tag="BB0171" FT /product="lipoate-protein ligase B" FT /EC_number="6.-.-.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0105" FT /protein_id="CAE30671.1" FT /translation="MIKWLARPADYGSVWDAMKAFTAARGPGTADEIWLCEHAPVYTLG FT QAGRPEHLLNPGLIPVVHCDRGGQVTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQAT FT LATLRELGLEQACRKPGAPGIYVPQPGGELAKIAALGVKVRNGYAYHGLALNIDMDLSP FT FLGINPCGYEGLRTVDLAACGVRTSVERAGELLAAQLARAHGQAVQQRAAALAGVPG" FT misc_feature 179725..180096 FT /note="HMMPfam hit to PF03099, DE Biotin/lipoate A/B FT protein ligase family, score 1.5e-31" FT misc_feature 179803..179850 FT /note="PS01313 Lipoate-protein ligase B signature." FT CDS 180332..181333 FT /transl_table=11 FT /gene="lipA" FT /gene_synonym="lip" FT /locus_tag="BB0172" FT /product="lipoic acid synthetase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0106" FT /protein_id="CAE30672.1" FT /translation="MSTLVESPVPSNDSQAAAPAAYDPTQKQKSQAKTARIPIKVVAAE FT KLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTATFMIMGD FT KCTRRCPFCDVGHGRPDPLDTQEPENLARTIAALKLSYVVITSVDRDDLRDGGAAHFVE FT CIAKVREYSPDTRIEVLVPDFRGRLDRALHILNSGPPDVMNHNLETVPRLYKQARPGSD FT YAHSLKLLAEFKKLHPEVPTKSGLMLGLGETDEEILQVMRDMREHNVDMLTIGQYLQPS FT EHHLPVLRYVHPDTFAMFEREAYAMGFTHAAVGAMVRSSYHADQQAHAAGVN" FT misc_feature 180542..181309 FT /note="HMMPfam hit to PF02546, , score 1.1e-175" FT CDS complement(181348..181896) FT /transl_table=11 FT /gene="rfbC" FT /gene_synonym="rmlC" FT /locus_tag="BB0173" FT /product="dTDP-4-dehydrorhamnose 3,5-epimerase" FT /EC_number="5.1.3.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP0107" FT /protein_id="CAE30673.1" FT /translation="MKLTPLAIADVVLIEPQVFGDERGCFFESFNQDRLDAQLGRRIRF FT VQDNHSCSRAGVLRGLHYQILHPQAKLVRVVAGEAYDVAVDLRRGSPTFGRWTGAYLSA FT RNRHQLWIPEGFAHGFLALSDDTECLYKATDYYAPEHERCVRWDDPQLKVDWPLQGQAP FT ILSVKDRQGVALARADTYA" FT misc_feature complement(181363..181890) FT /note="HMMPfam hit to PF00908, DE dTDP-4-dehydrorhamnose FT 3,5-epimerase, score 2.6e-106" FT CDS complement(181954..182850) FT /transl_table=11 FT /gene="rfbD" FT /gene_synonym="rmlD" FT /locus_tag="BB0174" FT /product="dTDP-4-dehydrorhamnose reductase" FT /EC_number="1.1.1.133" FT /note="ortholog of Bordetella pertussis (BX470248) BP0108" FT /protein_id="CAE30674.1" FT /translation="MNILLLGRTGQIGDALLAHPPAWARLAALERRQADLRDLGRLAAV FT LDAYAPRILINAAAYTEVDRAEAEPELALRINAQAVAVMADYARRNNALLVHYSTDYVF FT DGKRARAYRETDAAHPLNAYGRSKLAGEQAIAASGCPHLILRTSWVYASHGANFVKTIL FT RLARTRAELSVVADQHGAPTWAGRIATVTWQAIDAHRRRRLPDGLWHLSAGGHVSWHGL FT ACHIVARARRAGLALSLDPAHIRPVTTAQYPLPAPRPANSRLDCGALRDALEPELPDWQ FT VDLDAVVDALAARAHTL" FT CDS complement(182847..183908) FT /transl_table=11 FT /gene="rfbB" FT /gene_synonym="rmlB" FT /locus_tag="BB0175" FT /product="dTDP-glucose 4,6-dehydratase" FT /EC_number="4.2.1.46" FT /note="ortholog of Bordetella pertussis (BX470248) BP0109" FT /protein_id="CAE30675.1" FT /translation="MSILVTGGAGFIGSNFVLGWLASGDEPVINLDLLTYAGNAANLAA FT LRDDPRHLLVHGDIADAPLVRRLLREHRPRAIVNFAAESHVDRAIRAPDAFVQTNVVGT FT FALLEAARAYCAEQDDAAAAAFRFLHVSTDEVYGSLAPQAAPFTETHPYQPNNPYSASK FT AASDHMVRSYRHTYGLPAITTHCCNNYGPRQFPEKLIPLVIHHALAGRALPLYGDGMHV FT RDWLYVADHCAALECVLRDGQPGRTYNIGAHCERTNLEVVHAVCALLDQWRARPDGQPH FT ASGIAFIPERPGHDRRYAIDAGKIQRELGWRAATSFEAGLRETVRWYLNHPQWVADIAS FT GAYRHWLDTHYDT" FT misc_feature complement(182913..183902) FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 5.3e-160" FT misc_feature complement(183387..183473) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS complement(183944..184504) FT /transl_table=11 FT /locus_tag="BB0176" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3090" FT /protein_id="CAE30676.1" FT /translation="MANRLSVIATRTGDDGSTGLGDGSRVGKDTARIAALGDVDELNSV FT LGLLRAETLPAEMDADLSTIQHDLFDMGAELCIPGHIALADEQVAHLDARLAHYNAGLA FT PLREFILPGGSRAAALCHLGRTVARRAERSVVALARAEVVNAPVRQYLNRLSDLLFVLA FT RHVNQAQGARDVYWASRHARPAD" FT misc_feature complement(184001..184483) FT /note="HMMPfam hit to PF01923, DE Protein of unknown FT function DUF80, score 6.1e-62" FT CDS 184927..185232 FT /transl_table=11 FT /locus_tag="BB0177" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3088" FT /protein_id="CAE30677.1" FT /translation="MAFSRKYSSRMAVATAMAVVSLATPLAFAQQADATGEVRRVDAAA FT GKVSIKHDAISALDLPAMTLVYQIDPALLAGIKPGDKVRFTATRKDGRYVVTAISK" FT misc_feature 184927..185013 FT /note="Signal peptide predicted for BB0177 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.982 between residues 29 and 30" FT CDS complement(185275..186609) FT /transl_table=11 FT /gene="hslU" FT /gene_synonym="htpI" FT /locus_tag="BB0178" FT /product="ATP-dependent Hsl protease ATP-binding subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP3087" FT /protein_id="CAE30678.1" FT /translation="MSANHMTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEP FT LRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRD FT LTEYSIKQTRELEMRRVRSHAEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKR FT LREGKIDDLEIEIEIAQPMPQMDVMTPPGMEEMAEQLRGMFAGLARDKKKSKKIKVREA FT FKLIVEEEAAKRVNEDDLRAAAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRD FT LLPLVEGTTVNTRYGMVRTDHILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAED FT FVNILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTV FT MEKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDLARYVL" FT misc_feature complement(185449..186450) FT /note="HMMPfam hit to PF00004, DE ATPase family associated FT with various cellular activities (AAA), score 9.8e-06" FT misc_feature complement(186412..186435) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(186631..187170) FT /transl_table=11 FT /gene="hslV" FT /gene_synonym="htpO" FT /locus_tag="BB0179" FT /product="ATP-dependent protease heat shock protein" FT /EC_number="3.4.25.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3086" FT /protein_id="CAE30679.1" FT /translation="MEQFHATTIVCVRRGNHVALGGDGQVTLGNIVIKGTARKIRRLYH FT DKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRAAVELTRDWRTDRVLRRLEAMLIVA FT DTEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPEAIVKQSLEIAGD FT LCIYTNQNHVIETLGA" FT CDS complement(187318..187782) FT /transl_table=11 FT /gene="dksA" FT /locus_tag="BB0180" FT /product="putative dnaK suppressor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3085" FT /protein_id="CAE30680.1" FT /translation="MATKAATKKSSKSTSDTAIDLPSEQELLAMPEADYMNDRQLAFFK FT ERLKQLEQDILANAGETTEHLRETQFVPDPADRATIEEEHALELRTRDRERKLLKKVQQ FT AIARIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD" FT misc_feature complement(187336..187548) FT /note="HMMPfam hit to PF01258, DE Prokaryotic dksA/traR FT C4-type zinc finger, score 5.4e-09" FT CDS complement(187926..189035) FT /transl_table=11 FT /locus_tag="BB0181" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3084" FT /protein_id="CAE30681.1" FT /translation="MNTARSLDKMVPVTILTGFLGAGKTTLLKRILTEYHGRRVAVIEN FT EFGPESIDNDLLVQDRDEEIIELSNGCVCCTVRGDLMRTLSDLRARREAGELSFERVII FT ETTGMANPGPVCQTFFMDDDIAEYYRLDAVVTVVDAKHGMATLDAQDEAQKQVGFADRI FT LVSKKDLVNDVDYAALHQRLVRINPRAPITPVHFGEADLKSIIDISGFNLNSILDIDPA FT FLADEHPDAAHDHHDHDHGHGHEHDHDHEGECGAHCNHHHHHHHAHHDDEIGAFVFRSN FT KPFDPARLEEFLGGVVQVYGPDLLRYKGILYMKGINRRMLFQGVHMMMGAEPGKAWTAA FT EKPSTKMVFIGRKLPQEIFTRGLEQCLVG" FT misc_feature complement(187932..187940) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="PS00294 Prenyl group binding site (CAAX box)." FT misc_feature complement(187935..189008) FT /note="HMMPfam hit to PF02492, DE Cobalamin synthesis FT protein/P47K, score 3.4e-133" FT misc_feature complement(188961..188984) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(189312..189815) FT /transl_table=11 FT /locus_tag="BB0182" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3083" FT /protein_id="CAE30682.1" FT /translation="MSASRPTRADTVGAQLDLAESLCTQRGRRLTPIRRKVLELLLVHG FT RSLKAYELLEAMRAEHPGAAPPTVYRALDFLMDEGLIHRLDAVNAWSACHDAAGEPHDL FT LVVCTGCGAVAEISDPDMSRQLAERVARTGFALATHETEIRALCPQCQQNRPAQAHGHT FT HSHH" FT misc_feature complement(189381..189743) FT /note="HMMPfam hit to PF01475, DE Ferric uptake regulator FT family, score 1.6e-11" FT CDS 190144..190866 FT /transl_table=11 FT /locus_tag="BB0183" FT /product="putative transport protein ATP-binding" FT /note="ortholog of Bordetella pertussis (BX470248) BP3082" FT /protein_id="CAE30683.1" FT /translation="MAMTAPCIALRGAAFGWHGRPAVHGLTGEFSRGSMTAIVGPNGAG FT KSTLLKGLAGVLRPLAGALECEADLRRRLAWLPQASELERGFPITVADMVALGAWGRVG FT AWRRFDAAETARVHAALRRVGLQDLAGQSLGALSGGQMQRALFARLLLQDAPLLLLDEP FT FSAIDAATTDVLLDLLREQHAEGRTVIAVLHDLDMVRRHFPRTLLLAGRQVAWGETGQA FT LGDANLARARGLAMREAA" FT misc_feature 190240..190779 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 5.7e-46" FT misc_feature 190261..190284 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 190552..190596 FT /note="PS00211 ABC transporters family signature." FT CDS 190863..191759 FT /transl_table=11 FT /locus_tag="BB0184" FT /product="putative ABC transporter permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3081" FT /protein_id="CAE30684.1" FT /translation="MTLAEWLAGPFADYGFMRRALAGAVALSAGAAPLGVFLVLRRMSL FT MGDAMAHAILPGVAAGYLLSGLSLGAMMIGGLVTGLAVALLAGLVARLTPLREDASFAS FT FYLISLGLGVLLVSLRGSNMDLLHVLFGTVLGLDDAALLLVTAVASATLCILALAYRLL FT VAECLDPGFLRAAGGRGAWVHMLFMGLVVLNLVAGFQVLGTLMVVGLMMLPAAAARFWA FT GSAPGQIALAAVSACAASAVGLLVSFHANVPASPAIILAAGAFYLFSVACGPHGGLLVA FT ARRARRARPWQPEGDLP" FT misc_feature 190899..191681 FT /note="HMMPfam hit to PF00950, DE ABC 3 transport family, FT score 5.3e-43" FT misc_feature join(190923..190982,191064..191132,191166..191225, FT 191283..191351,191385..191453,191463..191531, FT 191550..191618,191631..191699) FT /note="8 probable transmembrane helices predicted for FT BB0184 by TMHMM2.0 at aa 21-40, 68-90, 102-121, 141-163, FT 175-197, 201-223, 230-252 and 257-279" FT CDS 191756..192685 FT /transl_table=11 FT /locus_tag="BB0185" FT /product="putative periplasmic solute binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3080" FT /protein_id="CAE30685.1" FT /translation="MKSRILALAAAVLLAPLVAAAQPLQVVASFSILADIAAQVGGPDV FT AVQSLVGPDGDAHEYEPTPADARKLAAAQVLVVNGLDFEAWLPRLQKAAGFAGRTVVAS FT EGIEPRRLDDAHEEHGDHDHDHDHGHHHHGDLDPHAWQDLANGATYARNIARAFAEADP FT AHAQAYRQRADAYVARIEALDQRVRQLFEAIEPARRKVVSSHDAFGYFGQAYGVRFVAL FT AGVSTDAEPSAADMARIIEQVRRERVPAVFVENIANPRLAQQLVRETQARLGGTLYSDA FT LAQPGKPAGTYLGMFEWNAQQLAAALRP" FT misc_feature 191756..191818 FT /note="Signal peptide predicted for BB0185 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.799 between residues 21 and 22" FT misc_feature 191768..192679 FT /note="HMMPfam hit to PF01297, DE Periplasmic solute FT binding protein family, score 2.1e-92" FT CDS 192733..193314 FT /transl_table=11 FT /locus_tag="BB0186" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3079" FT /protein_id="CAE30686.1" FT /translation="MWIDARAVVEFDAAGRIAAVRQVWRFDDMFGAYATQGLSSKPGGG FT LPPDVLRTMAEDWMKALGEPVSHYFTRVTQGARTLPFGPPRDAAVSFEDGRLTLAFTLP FT LAAPAPARGATAVDIYDPTYFVAYAFDEAGATALHGAPAGCSQAYRPPRPLDWATMQQL FT AAIPADPEALPEELFAITKGLTHRIEVTCP" FT CDS 193305..194273 FT /transl_table=11 FT /locus_tag="BB0187" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3078" FT /protein_id="CAE30687.1" FT /translation="MSVVRAGALVVLVLGCLAALPAAAQGGHPFGVPEATGAPGWLAGW FT FGQVAMWQAHFYRQLTGAVRAWQAEGGAAWMLIGLSFAYGVFHALGPGHGKAVIASYVL FT ANRQTARNGAWLALLSALAQALVAVALVTVLAVALGATAAAMNRATQWLETAAYAVVSL FT LGAWLVWQKALRPWWGSKGGHGHDHHAHHHAPDCACGHAHAPSARQAAGPLSARKAWAA FT ILAVGLRPCSGALIVLVFALAQGFFLAGVVATLAMGLGTGLTVAMLVALAAGARDAATR FT LGARLSTRRAAMLRQAIEALAAVAVLLLGLSLLGGQLAALR" FT misc_feature 193305..193376 FT /note="Signal peptide predicted for BB0188 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 24 and 25" FT misc_feature 193320..193352 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature join(193323..193376,193518..193586,193647..193715, FT 193758..193814,193980..194048,194061..194129, FT 194196..194264) FT /note="7 probable transmembrane helices predicted for FT BB0188 by TMHMM2.0 at aa 7-24, 72-94, 115-137, 152-170, FT 226-248, 253-275 and 298-320" FT CDS 194322..196463 FT /transl_table=11 FT /locus_tag="BB0189" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3077" FT /protein_id="CAE30688.1" FT /translation="MVCYIVSFNENGTSFYREGNMRFERHPLSAALALALAWQGAHAQA FT SADGTPEAATLAPITVSASPLAGDLDSMTAPAAVLEGDQLLLRRQGTLGDTLDGLPGVH FT ADTFGGGASRPVIRGQTAPRVKVLSDGSELMDASAISPDHAVTTEPLLADKIEVLRGPA FT TLLYGGGAIGGVVNVLDRKIPTAVPQQGIEAEAELRGATGTKERAGAIGITAGSGNFAV FT RVEGLKRRSSDYRVPDWPDGKLAGSYSESGQGTVGMSWITPRGYVGVAFTHLESKYGLP FT GHNHEYEGCHPHGSHLHCGGHDDHGHGHDEHEEGEAEHDHGHEHGAGDVPYVKLRSNRT FT DLRAEYTDPFAGFEKIRFRGGLTDYRHDEIEGGQLGTRFQNRGYDARLELTHRPLYGWH FT GVVGVQTSYSDFRATGEEAFLPRSKTRAHGLFLLEEYRWADWRVELGARQDWQRVSPQG FT GAPASRTAGTSLSAAAIWDFAPQYSLALSVSRSQRLPSAQELYADGVHLATNTYEIGDP FT GLDRETSRNVDLTLRKHSGDTTFSVSAFHNRVKNYIYANTLDRYEDFRLIEYTQRDAEF FT TGVEGEIRHRFGKVFSAAVFGDYVRGRLTGGGGNLPRIPAARLGVRADAQWQNWAGGVE FT YFHVYRQDDIAAYESSTPGYDMVNATIRYRGKLDRTAYEIYLRGNNLLNKLAFNHASFI FT STVAPLPGRSVLLGVRLTY" FT misc_feature 194322..194450 FT /note="Signal peptide predicted for BB0189 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.768) with cleavage site FT probability 0.707 between residues 43 and 44" FT CDS complement(196476..197456) FT /transl_table=11 FT /locus_tag="BB0190" FT /product="putative integrase/recombinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3076" FT /protein_id="CAE30689.1" FT /translation="MSAAPAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQL FT AAAAGLPLERVANGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPAT FT GVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAELVS FT LDLHYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAA FT GAGAQDAAALFVGTRGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQ FT DLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGRKTSR" FT misc_feature complement(196524..197102) FT /note="HMMPfam hit to PF00589, DE Phage integrase family, FT score 6.4e-33" FT misc_feature complement(197163..197423) FT /note="HMMPfam hit to PF02899, DE Phage integrase, FT N-terminal SAM-like domain, score 4.2e-18" FT CDS complement(197471..198163) FT /transl_table=11 FT /locus_tag="BB0191" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3075" FT /protein_id="CAE30690.1" FT /translation="MTAHTPTEPLNAHAVAEFLQHNPDFFIEHADVFATLQIPNPHGSR FT AISLGERQIQTLRERTRELEWRLSELIRNANSNETIGDHLSQWCCRMLAEADAQHVPGE FT IALGLAEQFDLNHVALRLWRLEGLPESGYGEPVSDDVRTFADSLKTPYCGTDTEFEAVS FT WLDAKPKSLALVALRPDAEAPTFGLLVLGSDDAARFAPDMGTAFLEAIGKLASAALRRL FT GTPPLAAA" FT CDS complement(198190..199101) FT /transl_table=11 FT /gene="dapF" FT /locus_tag="BB0192" FT /product="diaminopimelate epimerase" FT /EC_number="5.1.1.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP3074" FT /protein_id="CAE30691.1" FT /translation="MGDNPCMMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRH FT FGIGADQILLVEPATRADADFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLR FT AEIVTGVIVLDEGEDEQVTVDMGSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAG FT LPRSVAISTVAISNPHAVQVVDDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQI FT RLRVYERGAGETLACGTGACAAVAAGVRRGLLDSPVRVHTRGGMLTVDWNGERLRMTGP FT AISVFSGQVDIDRLVFTSGLHR" FT misc_feature complement(198247..198591) FT /note="HMMPfam hit to PF01678, DE Diaminopimelate FT epimerase, score 1.9e-37" FT misc_feature complement(198706..199071) FT /note="HMMPfam hit to PF01678, DE Diaminopimelate FT epimerase, score 1.4e-38" FT misc_feature complement(198844..198888) FT /note="PS01326 Diaminopimelate epimerase signature." FT CDS complement(199144..200034) FT /transl_table=11 FT /locus_tag="BB0193" FT /product="putative acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3073" FT /protein_id="CAE30692.1" FT /translation="MSQFKTRALTAMLRGFARMRPATRQRAGALVGWLSYRLARSRVRI FT VRRNLELCFPGQPEAVRERWTREHFRALGQSIVDRGVLWYGSPEAVREMVTQTGAERIN FT ALIAAGRPVILLAPHFVALDAAATRLTMEVPSGATMYTPQSDPAVDAIVRAGRARFNEV FT FLVSRKDGVRDLVRHLREPRPVYYLPDMDFGRAGSVFVPFFGVPAATLLATAQLARKWN FT AAVLPILDFWDPRTGRYHVEVLPELPDFPGDGSLEDATARLNRELESWVLRCPSQYYWV FT HRRFKTRPLGEPKLY" FT misc_feature complement(199174..200034) FT /note="HMMPfam hit to PF03279, DE Bacterial lipid A FT biosynthesis acyltransferase, score 2e-59" FT CDS complement(200031..200897) FT /transl_table=11 FT /locus_tag="BB0194" FT /product="putative acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3072" FT /protein_id="CAE30693.1" FT /translation="MLVTLLRMAAALPLPFLHAAGRLLGRLAYAFPGKYRDRLRANAAQ FT AGYPQPAFARRAAGEIGAMILEMPKVWFRNEQSLGKVVSDDYAIVEAARAEGRGILFLT FT PHLGCFEITARYLARQMPMTVMFRPPRKAALAPVLERARNTSAVNAVPATMQGVREFVR FT TLRRGESVGMLPDQAPGVGDGVWAPFFGRMAYTMTLPGKLASQTGVAVILTAGERLPGG FT RGWRIHYARVPEPLPDGPQEQAALINSAMESLIRRFPEQYLWGYNRYKVPRGAPPAPDS FT ARQEPEQ" FT misc_feature complement(200085..200897) FT /note="HMMPfam hit to PF03279, DE Bacterial lipid A FT biosynthesis acyltransferase, score 5e-18" FT misc_feature complement(200841..200897) FT /note="Signal peptide predicted for BB0194 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.922) with cleavage site FT probability 0.902 between residues 19 and 20" FT CDS 201045..202343 FT /transl_table=11 FT /gene="metK" FT /locus_tag="BB0195" FT /product="S-adenosylmethionine synthetase" FT /EC_number="2.5.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3071" FT /protein_id="CAE30694.1" FT /translation="MALVRQVRAKSAKASRPDLPYIAIPGCSAPRNLCAGFRPVREEVS FT VANNDFLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEI FT TTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGVDRSSEDYLN FT QGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRY FT VDGRPAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFV FT IGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGL FT ARQCQVQVSYAIGVAEPINITVYTEGTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLRP FT IYTKTAAYGHFGRSEPEFSWEATDKAAALKQGA" FT misc_feature 201189..201491 FT /note="HMMPfam hit to PF00438, DE S-adenosylmethionine FT synthetase, N-terminal domain, score 6.5e-53" FT misc_feature 201528..201884 FT /note="HMMPfam hit to PF02772, DE S-adenosylmethionine FT synthetase, central domain, score 3.1e-71" FT misc_feature 201537..201569 FT /note="PS00376 S-adenosylmethionine synthetase signature FT 1." FT misc_feature 201888..202337 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02773, DE S-adenosylmethionine FT synthetase, C-terminal domain, score 1e-81" FT misc_feature 201966..201992 FT /note="PS00377 S-adenosylmethionine synthetase signature FT 2." FT CDS 202454..202702 FT /transl_table=11 FT /locus_tag="BB0196" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3070" FT /protein_id="CAE30695.1" FT /translation="MTDASFPVAPRVESDETPDRPARVFTATDSPCVAVCSTLFDDICR FT GCGRTAMEVANWVFMSEEEKREVWVRIQAQGYPRRNN" FT CDS 202782..203822 FT /transl_table=11 FT /locus_tag="BB0197" FT /product="putative glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3069" FT /protein_id="CAE30696.1" FT /translation="MRIVLVTDAWHPQVNGVVRTWTTMQGLLQDWGHELIVVSPQGSRT FT VPAPSEPDLRLCLQPGRQLRRVLGDVVPDALHIATEGPLGLAARRMALRRGWRFTTSFH FT TMFPDYLQARMGIPAGLPWRYLRWFHRPSQRVLVPTPTVRDIVARRGLGNLQVWSRGVD FT ARRFAPGPRDFLPELPRPLFLCVGRVAREKNLDAFLSLALPGSKVIVGGGPDEARLRRK FT FPAAHFAGPQADDRLAAYYNAADVFVFPSLTDTFGLVMLEAMACGTPVAAFRSEAPLAV FT VQQGATGFLDDDLAQACRAALALDRDEVRAHALTRTWDAVARDLLAAFTPLLEAPLALP FT PAAQRI" FT misc_feature 203280..203729 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 1e-13" FT CDS 204102..205520 FT /transl_table=11 FT /gene="acyH" FT /locus_tag="BB0198" FT /product="adenosylhomocysteinase" FT /EC_number="3.3.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3068" FT /protein_id="CAE30697.1" FT /translation="MNAVTDKSVADYIVADMALAGWGRRELAIAETEMPGLMAIRDEYA FT ASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPV FT FAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQDISVLAKPGS FT EEERVLFAAIKETLARDPKWYSTRLAQIKGVTEETTTGVHRLYQMSQKGELAFAAINVN FT DSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKIAVVAGYGDVGKGCAQALAALRAQVW FT VTEIDPICALQAAMEGFKVVTMEEAAAHADIFVTATGNYHVITRQHMEAMKDQAIVCNI FT GHFDNEIDVAGLENCQWEEIKPQVDHVIFPDGKRIILLAKGRLVNLGCATGHPSFVMSS FT SFANQTIAQIELFTRNEAYTTGQVYVLPKHLDEKVARLHLKKLGAKLSTLSKQQADYIG FT VPVEGPFKPGHYRY" FT misc_feature 204129..205514 FT /note="HMMPfam hit to PF00670, DE S-adenosyl-L-homocysteine FT hydrolase, score 0" FT misc_feature 204348..204392 FT /note="PS00738 S-adenosyl-L-homocysteine hydrolase FT signature 1." FT misc_feature 204861..204911 FT /note="PS00739 S-adenosyl-L-homocysteine hydrolase FT signature 2." FT CDS 205591..205926 FT /transl_table=11 FT /locus_tag="BB0199" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3067" FT /protein_id="CAE30698.1" FT /translation="MALILVWILNAVALLAVAYLLPGITVASFGSALVAALVLGLLNML FT VKPVLVLLTLPITIVTLGLFLIILNALLFWFAGSVLRGFQVNGFWWAVAGAILYSIIAG FT LLTKLIP" FT misc_feature 205591..205695 FT /note="Signal peptide predicted for BB0199 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.984) with cleavage site FT probability 0.467 between residues 35 and 36" FT misc_feature join(205600..205668,205687..205755,205765..205833, FT 205852..205920) FT /note="4 probable transmembrane helices predicted for FT BB0199 by TMHMM2.0 at aa 4-26, 33-55, 59-81 and 88-110" FT CDS 205926..206768 FT /transl_table=11 FT /locus_tag="BB0200" FT /product="putative methylenetetrahydrofolate reductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3066" FT /protein_id="CAE30699.1" FT /translation="MTQSTAPAFSLEFFPPRDIAAQERLVRAAKQMLAIQPRYVSVTFG FT AGGSTRAGTADTVRTLRNLGCDAAPHLSCIGATRDQLRDILAAYREQGVRRLVALRGDL FT PSGMGGDAGELRYASDLVAFIRQETGDWFHIEVAAYPEMHPQAESPSADLAHFVNKVQA FT GADAAITQYFFNPDAYFDFVERAQAKGVAIPIVPGIMPITNHTQLVRFSEMCGAEIPRW FT IRLRLAEYGDDKASIRAFGLDVVSELCQTLLENGAPGVHFYTLNHAEATLGIWKALNA" FT misc_feature 205926..206762 FT /note="HMMPfam hit to PF02219, DE Methylenetetrahydrofolate FT reductase, score 1.4e-95" FT CDS complement(206832..207803) FT /transl_table=11 FT /locus_tag="BB0201" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3064" FT /protein_id="CAE30700.1" FT /translation="MSASPAPKKSAAALAPERLDWNLLRTFMFVVQERGVGRAATALHL FT SQPAVSQALKRLEQAVGGVLLYRRSGEFRLTNLGEEIYRLAREMYGMVARVEEAATQDE FT DDIAGTLRLLVMSKIQSTAYDDFLAHFHRRYPKVEFYVDVMQSAAILDALAKRVPALGL FT CLCRKAIDTLERRLFLRHRYVVVCGRHHPFFSRRNVRVEDLMDQNFVCFASDQLGDTLS FT PLTIFRDQQGFTGRIVGTSPYLEEIRRMVVAGVGLSFLPEHLIRQDVLAGELRRLPPEH FT NVAEIEVFLAWHRQRKLSAAEQAFLAAFERFLHRTPLEMRAR" FT misc_feature complement(206862..207494) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2e-30" FT misc_feature complement(207564..207743) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3e-19" FT misc_feature complement(207609..207701) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(207639..207704) FT /note="Predicted helix-turn-helix motif with score FT 1429.000, SD 4.05 at aa 34-55, sequence FT RGVGRAATALHLSQPAVSQALK" FT CDS complement(207867..208886) FT /transl_table=11 FT /locus_tag="BB0202" FT /product="putative aminohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3063" FT /protein_id="CAE30701.1" FT /translation="MKAFYHPDQKLHHPQTYFSRGKMRTPQEVPARLDALAEAARKLKF FT DVREPADAGAGAIGAVHSLDYLRFLREAHARWKQLPDDWGDEVVSNVFVREPNALRGVL FT AQAARYLADGSCPVGPHTWQSAYWAAQCAISGAQTLLDGERHAYALCRPPGHHARRDAA FT GGFCYLNNAAIAAQMLTQRYKRVAILDTDMHHGQGIQEIFYERSDVLYVSIHGDPENFY FT PVVAGFENERGAGEGYGYNVNLPMPHGSPEPVFFDHLQQAQRAIELFQPDALVLSLGFD FT VFEKDPQAMVAVSANGFERLGQAIGAFKLPTLIVQEGGYYIEGLEDNAERFFAGLAKA" FT misc_feature complement(207873..208811) FT /note="HMMPfam hit to PF00850, DE Histone deacetylase FT family, score 1.9e-55" FT CDS complement(208888..210261) FT /transl_table=11 FT /locus_tag="BB0203" FT /product="putative integral membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3062" FT /protein_id="CAE30702.1" FT /translation="MPAIRQSYERNMQGNHQTATHQPVRASIAAFVGTMIEWYDFYIYA FT TAAALVFGKLFFPSVDGFYGTLAAFGTFAVGFLARPLGGAVFGHIGDRIGRKKSLVITL FT LLMGTVTVLIGLLPTYASIGIWAPILLVALRFIQGIAVGGEWGGAVLMAGEHSPDRSKR FT TFFASFAQLGSPAGLILSMLMFKLVTSLDDAAFMDWGWRVPFLFSAALLVVGFAIRLSV FT NESPDFLAEQAEKARLKDAAAKQAADKAPIVEVLRGASGLLALAVGANVLGIAGFYFTN FT TFMLAYTTQYVGLSRGVILDCLLVVSVMQFIITPLSAYIATRIGSRRFLLITSFLSIFT FT PYVMFNMVDQGTLTSLTLGVGLAVVCLGAYYAVIAGYVSDSFPTRIRYTGISMAYQLSG FT AIFGGLTPILGTILAEKFQGHWWPLALLFSGISLLSMISVIFLANHRTDAVTAPLRSA" FT misc_feature complement(208909..210189) FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 3.7e-29" FT misc_feature complement(join(208927..208995,209023..209091, FT 209128..209196,209224..209277,209302..209370, FT 209413..209481,209596..209664,209707..209766, FT 209803..209871,209899..209967,210001..210069, FT 210112..210180)) FT /note="12 probable transmembrane helices predicted for FT BB0203 by TMHMM2.0 at aa 28-50, 65-87, 99-121, 131-153, FT 166-185, 200-222, 261-283, 298-320, 329-346, 356-378, FT 391-413 and 423-445" FT CDS complement(210539..211219) FT /transl_table=11 FT /locus_tag="BB0205" FT /product="5-formyltetrahydrofolate cyclo-ligase family FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3061" FT /protein_id="CAE30703.1" FT /translation="MHTQNTAKNTAAALRARLRQSRAELTSSQRSRGALLMRGRLFTWL FT NLACEQAAAQGRPLSRVAAFWPMEDEPDLLPLLEQWVESGIAVCLPAVQERDAPLVFRD FT WTPDSAMRTGAYGIQEPAAGPAVVPDVVLVPTLGYTLDAARLGYGGGYYDRTLAAWQAA FT GASPTTIGIAWSEGLLPDDYQAAAHDIALDAILTPDGWVPGAPLVASGAAAGHRSAGSR FT FLLR" FT misc_feature complement(210626..211195) FT /note="HMMPfam hit to PF01812, DE 5-formyltetrahydrofolate FT cyclo-ligase family, score 1.4e-26" FT CDS 211232..213358 FT /transl_table=11 FT /locus_tag="BB0206" FT /product="putative transglycosylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3060" FT /protein_id="CAE30704.1" FT /translation="MKRVLEARRYQKLALRDAADGMRGWLPVLALFTAACAPVDAQQRA FT AASAAPAAVSMQAAPDAEQARRPIAVPPAVLAGLPPAPQTPAQQAVVAAREASQRKQWS FT VLGALAPQARTDPLGMYPEYWLLRYQLWSPPGGRRPDAELQRFLAAHAGSYLEDRLRGD FT WIQAAARAGDFETVRRLGPVKQGNAQIACAGLDARHMTGQRASAAEAVAAFAPGTACWA FT LYDQLVADGVLGWDEIQPQLRDAIEAGKLSDARKLAQYIFEPKDQKSYDQMMKDPMKWL FT VRQDKSPVGRNEKELVTLALARLNKSDVSVADSYLRREWSRHLPRQNLAWVRSQYALVA FT VLNQDPRAYEWYREAGAVRMTEYSHAWKVRSALRQPRIDWKWVIEAIEGMPPSQQAEPV FT WVYWKARGQAALGRDQQASQAYASIADQFNFYGQLAAEELGRRITVPPAPAPVTDAEIA FT EARAHPGLRRAIYLFRLGWRAEAVPEWNFSLRGMSDRQLFAAAELARAEGIYDRVVNTS FT ERTAEQFDFSQRFIAPFEGRVSAKARAIDLDPAWVYGLIRQESRFIMDARSHAGASGLM FT QLMPATAKWVAGKIGMSDFRPGSVNDFDVNTELGTQYLNIVLQGLDGSQVLASAGYNAG FT PGRPRNWRASFGHPVEGAIFAETIPFNETRLYVKNVMSNAVYYAAMFSGQPQSLKERLG FT SIVPPQAALATNQR" FT misc_feature 212837..213196 FT /note="HMMPfam hit to PF01464, DE Transglycosylase SLT FT domain, score 1.3e-19" FT CDS 213355..214449 FT /transl_table=11 FT /gene="cca" FT /locus_tag="BB0207" FT /product="tRNA nucleotidyltransferase" FT /EC_number="2.7.7.25" FT /note="ortholog of Bordetella pertussis (BX470248) BP3059" FT /protein_id="CAE30705.1" FT /translation="MSRADDPGVAGLQVYIVGGAVRDGLLGLPAGDRDWVVVGATPEDM FT ARRGFIPVGGDFPVFLHPRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDL FT TVNAIARTPQGELVDPLDGVADVRARVLRHVGEAFAEDPVRILRLGRFAARFGDFSIAP FT ETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDD FT AAVRAEIDRAAAAGLPLAGRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALA FT ASATPAAQLDLIERCDALRKPERFDALLQAAAIVAPVDLSAWRARVQAVRAIDAGAIAR FT QCAGDPARIKPALRQARLQALGGA" FT misc_feature 213559..214029 FT /note="HMMPfam hit to PF01743, DE Poly A polymerase family, FT score 7.9e-34" FT CDS complement(214464..215723) FT /transl_table=11 FT /locus_tag="BB0208" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3058" FT /protein_id="CAE30706.1" FT /translation="MRRGPARAAALHRAFSLHGKIAAMQRPASSSLPPLDPAASAHSAS FT VARHLRAAIAAAGGWLPFSQWMSAALYAPGLGYYTAGATKLASPADAQGPALPAGDFVT FT APELTPLFAATVARQIAQVLRATDTASVLEFGAGTGALAEGVLRALAGLDCPARYLIVE FT VSADLRQRQQSRLAPFGDRVQWLDQLPDAFAGCVLGNEVLDAMPATLFRWSETGVVQER FT GVTVDADGEFAWQDRDADAPLAQAVAQRMPPLPGYVSEINLQAEAWVRGMGLWLQRGAA FT LLLDYGFPRSEYYHPQRAGGTLMCHLRHHAHADPFVAPGLQDITSHVDFTAMADAALAG FT GLQVLGYLSQARFLVNAGLLDALSQLDPADARAYAQAVAPVQKLLSEAEMGELFKVLAV FT GRDMPEPLLGFARGDRRGTL" FT misc_feature complement(214521..215549) FT /note="HMMPfam hit to PF02636, DE Uncharacterized ACR, FT COG1565, score 2.9e-34" FT CDS complement(215743..217467) FT /transl_table=11 FT /locus_tag="BB0209" FT /product="putative ATP-dependent RNA helicase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3057" FT /protein_id="CAE30707.1" FT /translation="MHMRRYMRQGKAMSFEDLGLAPTILSALSEAGFTEPTSVQAAAIP FT QAMAGADLMVSSQTGSGKTAAFMLPALNRIAHQPGNKGVGVQVLVLTPTRELALQVADA FT TASYGRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHT FT LVLDEADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIA FT GHRQKHANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQG FT FAAAALHGDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAED FT YVHRIGRTGRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPRPSTG FT GPRRGGKPMGGKRPGGYGAPREFGDRPQRPYGDRPQRDFGDRPQRDASDRPQRSFGDRP FT QRDFGDRPQRPYGDRPQRDFGDRPQRPYGDRPQRDFGDRPQRSFGDRPQRDFGDRPQRD FT IGDRPQRDFGDRPQRSFGDRPQREGGWHGAPREGRSFDKRPGGPAKRFAKPAAPRRG" FT misc_feature complement(216412..216627) FT /note="HMMPfam hit to PF00271, DE Helicase conserved FT C-terminal domain, score 1.8e-30" FT misc_feature complement(216766..217392) FT /note="HMMPfam hit to PF00270, DE DEAD/DEAH box helicase, FT score 1.7e-75" FT misc_feature complement(216949..216975) FT /note="PS00039 DEAD-box subfamily ATP-dependent helicases FT signature." FT misc_feature complement(217345..217467) FT /note="Signal peptide predicted for BB0209 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.742) with cleavage site FT probability 0.697 between residues 41 and 42" FT CDS complement(217706..218458) FT /transl_table=11 FT /gene="ung" FT /locus_tag="BB0210" FT /product="uracil-DNA glycosylase" FT /EC_number="3.2.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3056" FT /protein_id="CAE30708.1" FT /translation="MPNDNRLAPAALAAQAAALPAAWRHVLEQPAVARAFASVLGHVEQ FT RLAEGAVVYPATPFRALDQLAPADVRVVILGQDPYHGPGQAQGLAFSVPDDCKCPPSLR FT NIFNEIAVDYPRPTRHDLSAWTRQGVLLLNTSLTVEDGQPGSHAKRGWETVTDALIAEV FT ARDPSPKVFLLWGAHAQAKQALVPADAGHLVLAANHPSPLSARRPPVPFVGCGHFRQTN FT AWLQQRGQKPVDWSGEQNNASRQGKFAL" FT misc_feature complement(217781..218272) FT /note="HMMPfam hit to PF03167, DE Uracil DNA glycosylase FT superfamily, score 8.6e-60" FT misc_feature complement(218219..218248) FT /note="PS00130 Uracil-DNA glycosylase signature." FT misc_feature complement(218405..218458) FT /note="Signal peptide predicted for BB0210 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.948) with cleavage site FT probability 0.451 between residues 18 and 19" FT CDS complement(218495..219223) FT /transl_table=11 FT /locus_tag="BB0211" FT /product="haloacid dehalogenase-like hydrolase" FT /protein_id="CAE30709.1" FT /translation="MDALPTLPPTAAMTDFPFDAVLFDCDGVLVDSEPITNRVLCQMLG FT ELGWELSPEETMRIFTGKAVRDELPLIEARTGTRLTDEWFREFRQRRNDALDRELVEIP FT GAPQAVRALHAALDGRVAVASGADRLKVEMQLAKVGLADCFTGRVFSGQELPRSKPFPD FT VYLTAAQALDVAPSRCAIVEDSVIGATAGVAAGATVFGYSPPGQAGHSDAQALLATGVA FT HVLTDMAELPSVLAAWRAAG" FT misc_feature complement(218609..219172) FT /note="HMMPfam hit to PF00702, DE haloacid FT dehalogenase-like hydrolase, score 8.9e-24" FT CDS complement(219276..220013) FT /transl_table=11 FT /locus_tag="BB0212" FT /product="phosphorylase family protein" FT /protein_id="CAE30710.1" FT /translation="MLGILAALTDEIRALLDEMGPGAVTRRIGMRDYHVGELRGQPCVL FT VLTRVGKVAAAATTATLLREFPVDAVVFTGLAGGLHDSVRVGDIVIGTALIQHDLDARP FT LFPQYEVPLLERSHFATDAGLTERLHRCATGFLAGHAAGRAVPPSVHRGLIATGDCFVN FT RADTLRGLKAALPDALCVEMEGAAVAQVCHEFGVPCAVMRTVSDRADGSAMVDFQGFLR FT EVASVYSAGVLRGFLDMPRGARD" FT misc_feature complement(219303..220013) FT /note="HMMPfam hit to PF01048, DE Phosphorylase family, FT score 1.6e-33" FT CDS 220172..220987 FT /transl_table=11 FT /locus_tag="BB0213" FT /product="conserved hypothetical protein" FT /protein_id="CAE30711.1" FT /translation="MQTSMEGHEVVSRQAWLERRRALLEREKAQTRLRDELAAQRRALP FT WVRVDKPYAFETARGRRTLADLFDGRSQLIVKHFMLGPGWGEGCVGCSFEVDHVEGALL FT HLRHHDVGYVAVSRAPLAEIEAFKRRMGWGFEWVSSYGDDFNFDYHVSFTPQDMARGRG FT QYNYAETELPIDELSGLSVFYRDAAGEVFHTYSAYGRGAEEVLGAYMLLDLTPKGRNET FT GPRHDLTDWVRHHDRYGAAGQVAATGRYEASGGQAPPDAAPGCCGAPHT" FT misc_feature 220436..220498 FT /note="PS00028 Zinc finger, C2H2 type, domain." FT CDS complement(220993..221772) FT /transl_table=11 FT /locus_tag="BB0214" FT /product="AraC family transcriptional regulator" FT /protein_id="CAE30712.1" FT /translation="MLEQGPPTVNPAHLLTAFSIERARQARGISVPAHSHAEGMLVLVQ FT TGLALVQGNTEMLTMAPGNIGWVPPGIMHEAHWFGHARGTFLYVRADACARLPGHTSAW FT PLRPLVDALIDRLAGPAGAALSPAYGERLFDILLTELGLCEQSAHTLPMPRERRLRELA FT VRLLASPDDGSSIETWAERLNMSARTLMRRFRGETGITLGQWRQKVRLLRALELLAGGK FT PVTDVALAVGYDSPSAFIGSFRATYGVTPSQYFARNA" FT misc_feature complement(221005..221133) FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 3.2e-09" FT misc_feature complement(221020..221145) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT misc_feature complement(221152..221286) FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 3.2e-05" FT misc_feature complement(221188..221253) FT /note="Predicted helix-turn-helix motif with score FT 1527.000, SD 4.39 at aa 174-195, sequence FT SSIETWAERLNMSARTLMRRFR" FT CDS 221884..222324 FT /transl_table=11 FT /gene="fur" FT /locus_tag="BB0215" FT /product="ferric uptake regulation protein" FT /protein_id="CAE30713.1" FT /translation="MVGKDLRSAGIKATLPRLQVLEVFNRHPDRHLSAAEVYRTLAAER FT TPLGLATVYRVLGQLAQAGVLSRLQLDPHGSLFELAGKGRHDHLVCTRCGRVVESADPA FT IARQAARVARRHGFVLEAYNLGLYGRCRTCSALVSGPKGVFE" FT misc_feature 221905..222267 FT /note="HMMPfam hit to PF01475, DE Ferric uptake regulator FT family, score 1.5e-41" FT CDS 222321..222719 FT /transl_table=11 FT /locus_tag="BB0216" FT /product="conserved hypothetical protein" FT /protein_id="CAE30714.1" FT /translation="MNQADFRYHDVTGFPLVVARHRDGEPGFAARWIAEMERLAGNAAQ FT FVMIVPDLDVEIAHDDRKAMVQWQTGNMARLRECCKGFIAVKPDPSGLARTQAQAEKMT FT RAFGLPFCAVATLAQAREKARQLLEPAG" FT CDS complement(222727..223923) FT /transl_table=11 FT /locus_tag="BB0217" FT /product="putative Na+/H+ antiporter protein" FT /protein_id="CAE30715.1" FT /translation="MPTTPTRAPSLLQAFLRSEALGGYVLMIAAVLALIVANSPLAPAY FT FQLLGTKLGYASEAFTLKESVLHWINDGLMAVFFLLVGLEIKREMLDGQLRGVSRIVLP FT GVAAAGGMLMPALVYLLVNQGDPAGLRGWAIPAATDIAFALGILALLGSRVPTSLKIFL FT TALAILDDLGAIAIIAVFYTAELNTSALAAAGGLLAALCVLNRLRVLRLAPYLLVGALL FT WYFVLKSGVHATLAGVALALAIPLRRQDPRQPGAEHSPLHALEHALHRPVALLIVPVFG FT FANAGVSFDGMGIDSLTAPIPLGIALGLFLGKQLGVFGFAWLAIRTGLASMPRHASFAQ FT LYGVALLCGIGFTMSLFIGALAFDDAATIDATKIGVLTGSLVSAVLGYALLRVLPPAD" FT misc_feature complement(join(222736..222804,222841..222909, FT 222952..223020,223057..223125,223192..223260, FT 223294..223362,223372..223440,223459..223527, FT 223555..223623,223672..223728,223771..223839)) FT /note="11 probable transmembrane helices predicted for FT BB0217 by TMHMM2.0 at aa 5-27, 42-60, 77-99, 109-131, FT 138-160, 164-186, 198-220, 243-265, 278-300, 315-337 and FT 350-372" FT CDS 224115..224465 FT /transl_table=11 FT /locus_tag="BB0218" FT /product="hypothetical protein" FT /protein_id="CAE30716.1" FT /translation="MAGTLAPIRALFFWPDGAAAPRLVDTGPHLRAPGRGGYQLRLLRP FT SLALRRLARGQARVSVWHGVLRIWQGDALRAAEPAHAGPRARALTAAELRYLAAWLHQQ FT GLHWNTLHDAAL" FT CDS 224449..225582 FT /transl_table=11 FT /locus_tag="BB0219" FT /product="putative glycosyl transferase" FT /protein_id="CAE30717.1" FT /translation="MTQRSEPAVPALRILHTEAATGAGGQETSIYREMLAMRARGHHLE FT AACQPGAPLARRLRAAGFPVHELAMDGVAAGVRAVWRLRELVRGRFDVVNTHSRRDTVL FT AAWAGRMAGAPLIVRTRHLAKPVGSLYTYTWLPHRVIAVSDHVRGQILRAGARAAHVEA FT IASPATLAPAPPASSLRAELGIAAAAQVIGCVAVMRADKGLDDLLDAFVALAGRHAAAH FT LVLVGEPGGIGALLRERAQRLGLGARVHLTGHRDDIPNVLAAFDVFALPTRSEALGLAM FT VEAAAAGLPVVAGNVGGVPEVVRHGATGLLVPPSDPAALAQALERLLVDPALRRAMGRA FT GSRMVRDERDFSPERQAARVEAAYCRWLAQRGRPAWR" FT misc_feature 224971..225480 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 1.9e-47" FT CDS complement(225592..226056) FT /transl_table=11 FT /locus_tag="BB0220" FT /product="conserved hypothetical protein" FT /protein_id="CAE30718.1" FT /translation="MSTRHPDCPLCQQDGGALLWRGSHLRVIEVDDPDYPGFTRVVWNA FT HIAEMTSLSTHGRELLMRAVWAVEQAQRDVLHPDKVNLAALGNVVPHLHWHVIPRWRDD FT RHFPDAIWAAPRVAPGAEPQAWRAARADTAALLPRYRNRVVEAMNALLWH" FT CDS complement(226053..226502) FT /transl_table=11 FT /locus_tag="BB0221" FT /product="acetyltransferase (GNAT) family protein" FT /protein_id="CAE30719.1" FT /translation="MTPTEIRPLSAADHEAWLPLWKGYQEFYKVQLADAATAQTWQRFL FT DPAEPMHAALAWRDGKAIGMVHWIFHRSCWTTGDYCYLQDLFVAPDVRSSGAGRALIEH FT VYADARAQGAARVYWLTHETNTDAMHLYDHIADRSGFLQYRKVLA" FT misc_feature complement(226089..226343) FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 5.9e-15" FT CDS complement(226535..228058) FT /transl_table=11 FT /locus_tag="BB0222" FT /product="conserved hypothetical protein" FT /protein_id="CAE30720.1" FT /translation="MRNGGISRTIGRSPSTHCAMFIEAEADPSLSKAQYKAREARLRTA FT LLKAQYERLQRAEQSLLIVVAGIDGAGKGDTINMLNEWMDPRHIHTMAFGLPDAEELAR FT PPMWRYWNELPAKGRTGIVFGSWYVPLLLEAVRKKPDTARLEAHAAQIRRFEAMLAAEG FT VQIVKLWYHLSAQAQAERTERLLASPETAWQVTPADRKVRKKYGRLRNAGQVAMAYTDA FT AHAPWRVIPSADDEMRAVRTAEAVLAAMRRRATPRSVRAFGAPSPAVHLVDRLGALDYD FT AKEDKDDYEAELGLLQGRLARAVRRDDFRERSLVLVFEGQDAAGKGGAIRRVTRALDAR FT QYDITPVAAPARHELARPYLWRFWRRIPRQGRIAIFDRSWYGRVLVERVENITAPTDWR FT RAYGEILDFERQLVGHGAIVLKFWLAITPAVQLERFREREKSPYKNFKITPDDWRNRKQ FT WQAYADAANEMLCRTDMREAPWHLVSSNDKRYARLQVLRHIVETLEDQL" FT misc_feature complement(226541..227212) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03976, DE Domain of unknown FT function (DUF344), score 7.8e-94" FT misc_feature complement(227285..227974) FT /note="HMMPfam hit to PF03976, DE Domain of unknown FT function (DUF344), score 2.9e-18" FT CDS complement(228072..228941) FT /transl_table=11 FT /locus_tag="BB0223" FT /product="metallo-beta-lactamase superfamily protein" FT /protein_id="CAE30721.1" FT /translation="MSAHIQPFFDPATATFSYVLYEAPGGACAVIDPVLDFDPKSGRTT FT TASADRIADFVRQYALRTQWLLETHAHADHLSAAAYLQRQLGGVIGIGGHIRDVQAVFS FT KLYNLDGFACDGSQFGHLFEPDETFAIGALRVRALHVPGHTPADLAYLIDDGDSLSAFV FT GDTLFMPDVGTARCDFPGGDARTLYHSIRTLLALPPDTRLYMCHDYPPAGRAAAWQTTV FT AAQRAGNIHVRDGISESEFVAMRTARDATLDMPTLILPALQVNIRAGELPAPEANGTRY FT LRIPLDAL" FT misc_feature complement(228321..228914) FT /note="HMMPfam hit to PF00753, DE Metallo-beta-lactamase FT superfamily, score 5.2e-18" FT CDS 229045..229380 FT /transl_table=11 FT /locus_tag="BB0224" FT /product="ArsR family regulatory protein" FT /protein_id="CAE30722.1" FT /translation="MDDTLTDCEISALRASAAQACALLKALANEDRLLLLCQLVAAERN FT VGELETLTGIRQPTLSQQLGVLRDEGLVDTRRAGKYVYYQLASFEVGQVMKTLSSLYCG FT KASREQS" FT misc_feature 229114..229347 FT /note="HMMPfam hit to PF01022, DE Bacterial regulatory FT protein, arsR family, score 1e-17" FT CDS 229377..229808 FT /transl_table=11 FT /locus_tag="BB0225" FT /product="putative membrane protein" FT /protein_id="CAE30723.1" FT /translation="MTIDWAAFTPWSSLGGGMLIGAAAAWLMLGAGRIAGISGILAGLL FT PPRAGAAWRMWFLAGLLAAPWLYRVFEPMPAVRIEAGALQLVLAGLLVGVGTRYGSGCT FT SGHGVCGLARGSRRSLVAVLVFMATGFATVFVLRHLMGA" FT misc_feature join(229419..229487,229524..229577,229605..229673, FT 229734..229802) FT /note="4 probable transmembrane helices predicted for FT BB0225 by TMHMM2.0 at aa 15-37, 50-67, 77-99 and 120-142" FT CDS 229810..230226 FT /transl_table=11 FT /locus_tag="BB0226" FT /product="putative membrane protein" FT /protein_id="CAE30724.1" FT /translation="MGNAYSFAAGLIFGLGLLVSGMADPAKVLGFLDLAGAWDPSLGLV FT MAGAIGVAAPAFALARRQARAFDGEPMQWPAAKGIDRRLLGGSALFGVGWGLAGLCPGP FT ALLNAGAGYGQAWLFVAAMAAGMALHGALQRRGA" FT misc_feature 229810..229878 FT /note="Signal peptide predicted for BB0226 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.956) with cleavage site FT probability 0.875 between residues 23 and 24" FT misc_feature join(229822..229875,229918..229986,230059..230127, FT 230140..230208) FT /note="4 probable transmembrane helices predicted for FT BB0226 by TMHMM2.0 at aa 5-22, 37-59, 84-106 and 111-133" FT CDS complement(230242..231507) FT /transl_table=11 FT /locus_tag="BB0227" FT /product="putative phenylacetate-CoA ligase" FT /protein_id="CAE30725.1" FT /translation="MSEFFDVLETRQPAQRERDLMQALPAAIERATARAPAIAGQLRGI FT DPRSVDNRAALAALPVLRKHELLERQQHSRDGAGPAGPAKAFGGFSTVGWGQALRVFAS FT PGPIYEPEGNRADYWRFARALYAAGFRAGELAYNCFSYHFTPAGSMMETAAHAVGCTVF FT PGGTGQTEQQVRAIHDLAPSGYTGTPSFLKLILEKADELGIRLDSLRRALVSGEAFPPS FT LRDWLAARGIEGYQAYGSADLGMIAFETSAREGLVVGEDIILEIVRPGTGEPVPDGEVG FT EVVVTTLNPDYPLVRFGTGDLSAIMPGQSPCGRTNIRIRGWLGRADQTTKVRGMFVHPS FT QVADVLRRHPEIVRARLVVSGATGADHMVLHVQARERSPELAGRIADSVREVTKLRADV FT QWADEGALPNDGKVIDDVRSYE" FT CDS complement(231576..232406) FT /transl_table=11 FT /locus_tag="BB0228" FT /product="ABC transporter ATP-binding protein" FT /protein_id="CAE30726.1" FT /translation="MTAANTAPADKVLLDVNGIEVIYNHVILVLKGVSLRVPEGRIVAL FT LGANGAGKTTTLRAVSNLLKGERGDVTKGYIQYRDERIERLSPAELVKRGVVQVMEGRH FT CFAHLTIEENLLTGAYTRKLGRGDIDAALERVYQYFPRLKQRRTSQAGYTSGGEQQMTA FT IGRALMASPTMILLDEPSMGLAPQIVEEIFEIVRDLNQRERVSFLLAEQNTNIALRYAD FT YGYILENGRVMMDGAAAELAQNEDVKEFYLGISSGERKSFREQKFYRRRKRWLA" FT misc_feature complement(231717..232289) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.6e-33" FT misc_feature complement(232245..232268) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(232468..233805) FT /transl_table=11 FT /locus_tag="BB0229" FT /product="putative exported protein" FT /protein_id="CAE30727.1" FT /translation="MEMKRLNLRLTAAVIAAAGALGAIAAPAMAAEEQFVPLLVYRTGS FT FAPLGIPWADGKLDYLKLINERDGGINGVKITYEECETAYATDRGVECYERLKTRGTGA FT SGFDTQSTGITFAVSDKAMVDKVPVETMGYGLSQSVDGSVFQWNFPLLGTYWTAADVMV FT QDIAKKEGGMDKLKGKKIALVYHDSPYGKEPIPLLQKRAAKEGFELLLYPVTAPGVEQK FT STWLQVRQQRPNYVLLWSAGIMTPTAIREAQASGYARDKIYAIWWAGSEGDVKDLGDVA FT KGYNAVTIHNSAATGKVYEDLKKYVYDKGQGSDKSGNTTLGTIAHTRGMMISMLQVEAI FT RAAQEKYGKGKALTPEQVRWGFENLNLTQERLDQLGFGEIMRPVKTSCANHMGDDWARI FT VQWDGSKFKVVSDWYQSDKSVLDPMVKEAAAKYAKEKNVTPRNCAG" FT misc_feature complement(233716..233805) FT /note="Signal peptide predicted for BB0229 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 30 and 31" FT misc_feature complement(233719..233787) FT /note="1 probable transmembrane helix predicted for BB0229 FT by TMHMM2.0 at aa 7-29" FT CDS complement(233918..234982) FT /transl_table=11 FT /locus_tag="BB0230" FT /product="putative branched-chain amino acid transport FT system permease" FT /protein_id="CAE30728.1" FT /translation="MFYRENGQFKTSYRADQQIFPIRQDRIFIALLMAVIFVVVPLTAS FT DYLLRAILIPFLILALAAVGLNILVGYCGQISLGTGAFMAVGAYAAWNFGVRFPGMPLV FT AQILLGGCFATLVGVIFGIPSLRIRGLYLAVATLAAQFFVDWAFLRIPFFTNYSSSGSV FT SVPPMTFFGLPVQSALEKYLLVLGFVVVFTLLAKNLVRGAIGRQWMAIRDMDVAAAVIG FT IRPMYAKLSAFAVSSFIVGVAGALWGYVHLGSWEPLAFDLARSFQLLFMVIIGGLGSIL FT GSFFGAAFIVLVPVALTNVPHLLGLSLSVDTAAHIEHMVFGALIVFFLIAEPHGLARLW FT SIAKEKLRIWPFPH" FT misc_feature complement(join(233957..234025,234107..234175, FT 234218..234286,234371..234439,234536..234595, FT 234614..234682,234695..234754,234773..234841, FT 234851..234904)) FT /note="9 probable transmembrane helices predicted for FT BB0230 by TMHMM2.0 at aa 27-44, 48-70, 77-96, 101-123, FT 130-149, 182-204, 233-255, 270-292 and 320-342" FT misc_feature complement(233960..234853) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 9.6e-08" FT misc_feature complement(234647..234679) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(234993..235922) FT /transl_table=11 FT /locus_tag="BB0231" FT /product="putative branched-chain amino acid transport FT system permease" FT /protein_id="CAE30729.1" FT /translation="MGFFLETLFGGLMSGMLYALIGLGFVLIFKASGVFNFAQGAMVLV FT AALSMARFSEWIPQWLGFENMLLANVLAFIVSALVMFVLAVAVERFVLRHLVNQEATTL FT LMATLGISYFLDGLGQIAFGSSVYSINVGMPKDPAIILETMFEGGLLINLEDLTAAVVA FT ALLVAALALFFQYTSTGRALRAVADDHQAAQSIGIPLNRIWVIVWSVAGLVALVAGIIW FT GSKFGVQFTLSTAALRALPVVILGGLTSVPGAILGGLIIGVGEKMSEVYLGSLVGGGIE FT IWFAYVLALVFLLFRPQGLFGEKIIDRV" FT misc_feature complement(235008..235913) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 5.4e-11" FT misc_feature complement(join(235044..235112,235131..235199, FT 235257..235325,235386..235454,235554..235622, FT 235659..235727,235770..235823,235836..235895)) FT /note="8 probable transmembrane helices predicted for FT BB0231 by TMHMM2.0 at aa 10-29, 34-51, 66-88, 101-123, FT 157-179, 200-222, 242-264 and 271-293" FT CDS complement(235933..236730) FT /transl_table=11 FT /locus_tag="BB0232" FT /product="putative high-affinity branched-chain amino acid FT transport ATP-binding protein" FT /protein_id="CAE30730.1" FT /translation="MSNQTRAQRIGDVMLDMQNISLSFGGVKALTDISFNVREHEIRAI FT IGPNGAGKSSMLNVINGVYTPQNGAIMLRGEHFSRMSPRRAAEMGIARTFQNLALFKGM FT SVLDNIMTGRNLRMKSGLLAQALRLGPAEREEIAHREYVENIIDFLEIQAYRKVPVGRL FT PYGLQKRVDLGRALAMEPRLLLLDEPMAGMNIEEKQDMSRFILDVNDEFGTTIVLIEHD FT MGVVMDISDRVVVLDYGKKIGDGSPDEVRSNEDVIRAYLGVAH" FT misc_feature complement(236014..236613) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 3.2e-45" FT misc_feature complement(236569..236592) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(236734..238710) FT /transl_table=11 FT /locus_tag="BB0233" FT /product="putative AMP-binding enzyme" FT /protein_id="CAE30731.1" FT /translation="MAQSLPASATVPAAAQTFPALLLEHASVRGSRPAIREKDLGIWQT FT LTWSEVAASVRLTAHGLAALGIGPGMHVAVIGENRPRLYIAMMATQALGAIPVPLYQDA FT VAQEMVYVLQDAEVSVVVVEDQEQADKMLEVREQCPALAHVVYDDPRGMRHYSDPLLRS FT FEQLEDTGRAHAASHPGFFEQAVAAVRPHDAGAMFYTSGTTGKPKGVVLTHHALIDRAR FT AVAEMENLTDQEDVLAYLPPAWIGQNMFSYTQLLVSGFTVNHPESPETVSIDMRDIGPT FT YYFAPPRVLEGLLTHVMIRMEDAGYIKRKLFHACMNLARRVGTRILDGQPVGLWDRLRY FT RLGDALIYGPLRNALGMSRVRVAYTAGEAIGPDLFVFYRSIGINLKQLYGSTETSVFVC FT VQPDGHVRDDTVGPPVEGVDIRVADNGEILVKSPGLFKEYYRNPEATAEARDDDGWFHT FT GDAGYLDSDGQLKIIDRAKDVGKLADGSLFAPKYIENKLKFFPYIKEAVAFGNGRDDVC FT AFINIDLEAVGNWAERRGLPYAGYTDLAGKDEVYALLQDCVEKVNADLAGDARLAASQV FT GRFLILHKELDPDDDELTRTRKVRRAFIGQKYGVLVDALYGGKDTQFIETEVKFEDGRV FT GRISADLKIRAARTFPAITAKAA" FT misc_feature complement(237187..238572) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 6.3e-81" FT misc_feature complement(238087..238122) FT /note="PS00455 Putative AMP-binding domain signature." FT misc_feature complement(238507..238539) FT /note="PS00639 Eukaryotic thiol (cysteine) proteases FT histidine active site." FT misc_feature complement(238666..238710) FT /note="Signal peptide predicted for BB0233 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.809) with cleavage site FT probability 0.746 between residues 15 and 16" FT CDS 238877..239587 FT /transl_table=11 FT /locus_tag="BB0234" FT /product="cyclic nucleotide-binding protein" FT /protein_id="CAE30732.1" FT /translation="MQLADSLYLAAAWFRVLDAAQKLRVERDIAVQQVQAGTIIERKGE FT LAQVWIGVLSGLVKVSVGNAEGKVASLTGVPAGGWIGEGSLLKREVRKYDVVALRDSVV FT ARLPAGTFDWLLDTSIPFNRYLLHQLNERVAQFIGKAEYDRLLDPDARVARCLAELFNP FT LLYPGMGMRLTITQEEVGYLARVSRQRANQALRKLEEAGLLQVEYGAVRVLDLDGLKGY FT GADTDTAGALDDAG" FT misc_feature 238958..239239 FT /note="HMMPfam hit to PF00027, DE Cyclic nucleotide-binding FT domain, score 5.6e-10" FT misc_feature 239399..239464 FT /note="Predicted helix-turn-helix motif with score FT 1258.000, SD 3.47 at aa 175-196, sequence FT ITQEEVGYLARVSRQRANQALR" FT CDS complement(239594..240229) FT /transl_table=11 FT /locus_tag="BB0235" FT /product="probable transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0564" FT /protein_id="CAE30733.1" FT /translation="MFTLSVPAYVTAWASGAATGLGLFAVVGAQSAFILRQGLMRAHLL FT SILAVCALIDAVFIFGSVWGLQTLTGWFPWLTQAILWFGVAFLAWYALQSARRALRSDG FT GLEVARQAIPSRGAALLGAIGFSLLNPHFWLDMMVVGSLAHGFADARLAFAAGALTASV FT VWLAVLGVGSRLFAPLFSSPRAWRVLDGLIAAVMALLAARLALGGLAG" FT misc_feature complement(join(239609..239677,239714..239782, FT 239825..239893,239951..240019,240032..240100, FT 240134..240202)) FT /note="6 probable transmembrane helices predicted for FT BB0235 by TMHMM2.0 at aa 10-32, 44-66, 71-93, 113-135, FT 150-172 and 185-207" FT misc_feature complement(239690..240010) FT /note="HMMPfam hit to PF01810, DE LysE type translocator, FT score 8.1e-18" FT misc_feature complement(240143..240229) FT /note="Signal peptide predicted for BB0235 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.835) with cleavage site FT probability 0.262 between residues 29 and 30" FT CDS 240359..241258 FT /transl_table=11 FT /locus_tag="BB0236" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0563" FT /protein_id="CAE30734.1" FT /translation="MKLDHGNLRALAAVVREGSFERAAAALSVTPSAVSQRVKALEDRM FT GRLLVQRTVPARATDDGQVLVQLAEQAALLEHDALNRLGVAEDEVPHASIPVAVNHDSL FT ETWFVDAAVRFAARSRATLDLQSEDQDHTAALLRKGAVLGAVTTLADPVQGCRIHALGS FT MRYVACCTPTFHQRYFAQGVSARTLASAPVLVFNRKDALQARYAHRIIGRAAWEPPVWW FT LPSSRAFVQATLGGLGWTMNPLPLVQAELDAGQLVPLRARAWEDVPLYWQHWRVNSQAM FT EALTDAVLAAARALVRRR" FT misc_feature 240365..240547 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.1e-13" FT misc_feature 240410..240475 FT /note="Predicted helix-turn-helix motif with score FT 1673.000, SD 4.89 at aa 18-39, sequence FT GSFERAAAALSVTPSAVSQRVK" FT misc_feature 240413..240505 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 240620..241237 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 0.00064" FT CDS 241354..241845 FT /transl_table=11 FT /locus_tag="BB0237" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0562" FT /protein_id="CAE30735.1" FT /translation="MNIRKWGVGAVLGLSVATTAWAADFKVGQVEVDDLWVRASAPGQA FT NGAGYMEIENDAKAADRLVSVSSPAAERVELHNVVTENGVAQMRQVDGVAVPADGKARL FT APGGYHVMFLKLKAPFAEGGEVPATLKFEQAGEVAVKFKVKPLGHNPGMAGHDHGHMKH FT " FT misc_feature 241354..241419 FT /note="Signal peptide predicted for BB0237 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT CDS complement(241892..242857) FT /transl_table=11 FT /locus_tag="BB0238" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0561" FT /protein_id="CAE30736.1" FT /translation="MHKHAKRLLALAALTFAAGAAAQNWPSQPLRWIVPYPAGGGTDVV FT ARTVAGSLEKPLGQTIVVENRPGAATIIGATAIAQADPAGYVVGTADSGTLAFNPSLYA FT KLSYDPAKFTYIGGIARFPLMLAVNVNSPYKSVEDVLQAARKEPAKLTAASAGAGSPHH FT LALELFKQRANVDVLHVPYKGAAPAIQDLLGGQVDMMFIDLAAGLPNIKAGKLRVLGTA FT TPERLAVLPDAPTMAEQGVADFTAYAWQGLVGPAGMPEAAVKKLGGELEQSLKSPAVSQ FT KLLDMGVMPMPMTPQDFKAYAEKERAAWADVIKKANIRLE" FT misc_feature complement(241904..242725) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.5e-92" FT misc_feature complement(242792..242857) FT /note="Signal peptide predicted for BB0238 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.898 between residues 22 and 23" FT CDS complement(243015..243767) FT /transl_table=11 FT /locus_tag="BB0239" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0560" FT /protein_id="CAE30737.1" FT /translation="MAAQRRGAYERYRMTEVDSMPHRLAAIQARIKAACERSARPPESV FT ALLPVSKTFPVEAIRHAAALGLRRFGENKTQEIRHKAPELADLDLQWVMIGHLQTNKAK FT DVARDVAEVQSLDRLELADALQRRLEMEARSLDVLVQVKTSPEPSKYGLAPELLPGFLR FT TLVSDFPALRVQGLMTMAVNDEDPQAVRACFRLLRELRDRARDSVPGVALDRLSMGMSG FT DFEIAIEEGSTEIRIGSALFGARPASAP" FT misc_feature complement(243030..243704) FT /note="HMMPfam hit to PF01168, DE Uncharacterized protein FT family UPF0001, score 2e-58" FT CDS 243970..245211 FT /transl_table=11 FT /locus_tag="BB0240" FT /product="probable aminotransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0559" FT /protein_id="CAE30738.1" FT /translation="MPLAAPDYAFAAPFQHPPASPIRSLMPYAMRPGTISLAGGYPAQE FT LFDVEGLAAASRQVLERLGACLQYSNIDGQASLRHELARLSAARGLHCDADTELAVTGG FT SQQALALLARVMLQPGDAAVIETPAFPNSVQALRYTGAAVHTVPSGPSGIDLDALDALA FT ARVRPKMVCVVASFSNPCGATISRERRLRLLELAVRHRFLIVEDDPYGELRFAGETVPP FT IAALAEGQARHWAVYISSMSKTMAPALRIGWVVAPAEVRRRVVGAKAADDMACSAWTQE FT MVAQYLADGRYAQHVPRIRAAYGARCDAMAAALERELGERVVFRKPEGGMFFWARLNGA FT IDATRLLPYAIEHEVVYVPGKAFYADPAQADVNALRMSFATMNEAQIAQGIVRLGRALQ FT ACEANAPVSISLAA" FT misc_feature 244216..245163 FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 3.9e-08" FT CDS 245325..246341 FT /transl_table=11 FT /locus_tag="BB0241" FT /product="amino acid-binding periplasmic protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0558" FT /protein_id="CAE30739.1" FT /translation="MKIAQGLAAAALLAGMVAGAQGATLDVVKKRGTVVCGTTTGFAGF FT SAPDKQGTWRGLDVDLCRAVAAAVFGDASKIKVVPLNSQQRFTALQSGEVDVLTRNTTV FT TQQRDTALGIIHAGINFYDGQGFMVPKSLGVKSAKELNGATICLQTGTSNENTLADWAR FT ANQVSYKPVVIETFNEVVNAFASGRCDVFSTDASGLASIRISRLEKPDDYVVLPEIISK FT EPLGPFVRQGDDAWLNIVRWSLSAMIEAEEYGVTTANVDEQLKSENPNVRRILGVTPGA FT GANLGLDEKWAYNIIKQVGNYGESFERNVGQGSPLKIQRGLNAQWTQGGLMYALPIR" FT misc_feature 245325..245390 FT /note="Signal peptide predicted for BB0241 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.790 between residues 22 and 23" FT misc_feature 245424..246113 FT /note="HMMPfam hit to PF00497, DE Bacterial extracellular FT solute-binding proteins, family 3, score 1.9e-33" FT misc_feature 245490..245531 FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT misc_feature 245838..245867 FT /note="PS00659 Glycosyl hydrolases family 5 signature." FT CDS complement(246376..246852) FT /transl_table=11 FT /locus_tag="BB0242" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0557" FT /protein_id="CAE30740.1" FT /translation="MNNLFAAPTPEEHAALLQEIGPLPLSGQAWPDWVRILAWIVLAVI FT GVQIVTTAIGLPPGQVNPVLAGTIILCFLGLALVSWHMQISVTRIDESGLRQTWITRRE FT VAWQDIQFAKFVPLLFSKRLVVFTRHGRPIVFQGGTRDLQVAFAKISLLYRRKR" FT misc_feature complement(join(246610..246678,246688..246756)) FT /note="2 probable transmembrane helices predicted for FT BB0242 by TMHMM2.0 at aa 33-55 and 59-81" FT CDS complement(246995..247903) FT /transl_table=11 FT /gene="hmgcL" FT /locus_tag="BB0243" FT /product="hydroxymethylglutaryl-CoA lyase" FT /EC_number="4.1.3.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0556" FT /protein_id="CAE30741.1" FT /translation="MSQPSRVKIVEVSPRDGLQNEKEFIATDIKVELVDRLSAAGFQNV FT EAASFVSPKWVPQMADGAEVMARIARRPGTIYSVLTPNMKGLEGALAARADEIVIFGAA FT SEAFSQKNINCSIAESIARFEPVAAAARQAGVRVRGSISCALGCPYQGEVPVEAVVDVA FT RRFLALGCDEIDVADTIGVGTPRRVREVMDAVTRVVDPARVSGHFHDTYGQALANILAA FT LETGIAIFHASASGLGGCPYAKGATGNVATEDVLYMLRGLDIETGIDFDAVVDIGQWIS FT GHLQRKGSSRAGNAVAAKRAA" FT misc_feature complement(247040..247867) FT /note="HMMPfam hit to PF00682, DE HMGL-like, score 1.1e-74" FT CDS complement(248017..249129) FT /transl_table=11 FT /gene="smf" FT /locus_tag="BB0244" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0555" FT /protein_id="CAE30742.1" FT /translation="MPLTHTRAELSAWLRLSQEPGVGPAAAYALLAALGMPEQIYAQGS FT ATLARHVPQDVARQLRAPLSDEAAALIEKTLQWAEQPGHHILTLADPAYPQQLLTIADP FT PILLYVNGDPACLRRPAMAVVGARNATPGGQDNARAFARHLAGQGWCIVSGLALGIDAA FT AHEGALLAGAQGAGTVAVMGTGIDRIYPAAHRDLAHRIVQHGALVSELPLGTGAQRHHF FT PRRNRLVAGLARGVLVVEAARQSGSLITARLAGENGREVFAIPGSIHSPLSRGCHALIR FT QGAKLVETAQDIADELGGAGPAASARTAPPDRPAPPHPLLDALGFDPLHLDALQARTGM FT DAASLNAQLLELELDGRVARVEGGRFQRLR" FT misc_feature complement(248266..248898) FT /note="HMMPfam hit to PF02481, DE SMF family, score FT 5.8e-96" FT CDS complement(249230..249763) FT /transl_table=11 FT /gene="lrp" FT /gene_synonym="alsB" FT /gene_synonym="livR" FT /gene_synonym="ihb" FT /gene_synonym="oppI" FT /locus_tag="BB0245" FT /product="leucine-responsive regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0554" FT /protein_id="CAE30743.1" FT /translation="MHEYANQFEQHERKLPMQLDAIDRRILDILQTEGRLSNQDLADRV FT ALSPSACLRRVRALEDGGVIQGYRAVLDPRCLGLDFEAIVHVSLDQSQAGWHEAFVARL FT AGLQEVRQASIVTGSSNYVLQVRTRDLAAFSAFVVDKLNGIAGVREIHSHIVMRKVKDC FT GGVLPVDPAGLAGP" FT misc_feature complement(249326..249637) FT /note="HMMPfam hit to PF01037, DE AsnC family, score FT 5.1e-30" FT misc_feature complement(249575..249655) FT /note="PS00519 Bacterial regulatory proteins, asnC family FT signature." FT misc_feature complement(249593..249658) FT /note="Predicted helix-turn-helix motif with score FT 1211.000, SD 3.31 at aa 36-57, sequence FT LSNQDLADRVALSPSACLRRVR" FT CDS 249852..251102 FT /transl_table=11 FT /locus_tag="BB0246" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0553" FT /protein_id="CAE30744.1" FT /translation="MTTRQACLEADRRDPLAAFKDEFELPAGLIYLDGNSLGALPRGAA FT ARAAQVIGQEWGQGLIRSWNTAGWFELPARLGNKLAGLIGAGQDEVVMTDSTSLNIFKA FT LAAALRLAQRAAPQRKVIVSERDNFPTDLYMIQGMIDLLRQGYELRLVDAGLSLEQALD FT DDVAVVLLSHVNYRTGAMHDMAAVSRQAHARGALIIWDLAHAAGAVPVALDADGADFAV FT GCTYKYLNGGPGSPAFIWVAPRHRDDFWQPLSGWWGHRQPFEMADTYVPAQGIRRYLCG FT TQPIVSLATAECGLDIALRADIAQVRAKSLALGDLFIALVESRCADHPLTLATPREHAR FT RGSHVSFLHPQGYAVMQALIARGVIGDYREPELLRFGLTPLYLSHADIWDAVEILREVL FT DTRAWDRPQYRERAAVT" FT misc_feature 250584..250652 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT CDS 251204..251716 FT /transl_table=11 FT /gene="def" FT /gene_synonym="fms" FT /locus_tag="BB0247" FT /product="polypeptide deformylase" FT /EC_number="3.5.1.31" FT /note="ortholog of Bordetella pertussis (BX470248) BP0552" FT /protein_id="CAE30745.1" FT /translation="MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGV FT GLAATQVDVHERVVVIDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVER FT AARIRCKALDQQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKA FT EREAERA" FT misc_feature 251207..251677 FT /note="HMMPfam hit to PF01327, DE Polypeptide deformylase, FT score 1.7e-70" FT CDS 251782..252720 FT /transl_table=11 FT /gene="fmt" FT /locus_tag="BB0248" FT /product="methionyl-tRNA formyltransferase" FT /EC_number="2.1.2.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP0551" FT /protein_id="CAE30746.1" FT /translation="MRLVFAGTPEFARIALDALLAAGHDVPLVLTQPDRPAGRGLKLTP FT SPVKQAALAAGIEVAQPRSLRLDGRYPDEAAAARAQLERVAPDVMVVAAYGLILPQWTL FT DLPRLGCLNIHASLLPRWRGAAPIQRAIEAGDAETGVTIMQMDAGLDTGDMLLERAVPI FT GAQQTAAQLHDELALAGGQAIVDALAALGQGGLAPRRQPDAGVTYAAKLDKAEAALDCS FT LPAAVLARRVRAFNPVPGATIRLPGLDDPVKVWRAQALEQAAGGPPGAVLRADAQGIDI FT ATGQGVLRLLELQKAGGKRQPVDVFVRGWQP" FT misc_feature 251782..252345 FT /note="HMMPfam hit to PF00551, DE Formyl transferase, score FT 1.4e-52" FT misc_feature 252415..252714 FT /note="HMMPfam hit to PF02911, DE Formyl transferase, FT C-terminal domain, score 2.6e-25" FT CDS complement(252743..253369) FT /transl_table=11 FT /locus_tag="BB0249" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0550" FT /protein_id="CAE30747.1" FT /translation="MSSDPTHRITDLDTLQARYGTPAPNSLTKEVDYLHPHYRAFVETA FT PFVVLATSGPQGLDTSPRGDGPGFVVIEDDRTLLLPDRRGNNRIDSLRNIVADPRVALL FT FLVPGVGETLRVNGQAEISVEPALLARFAVDGKPPRSVLRVRVETVFFQCSRAIVRSAL FT WNPDARVDRASLPSAGQILGALSAGTLDGERYDRELPERVRATLY" FT CDS complement(253366..254022) FT /transl_table=11 FT /locus_tag="BB0250" FT /product="probable haloacid dehalogenase-like hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0549" FT /protein_id="CAE30748.1" FT /translation="MKYRLAAFDFDGTLADTLPWFESVMDGVADKYGFRKASSADKAQL FT RHRSTREIMAFLEVPVWKLPAIMAHVRQLMREIDPAVRMFAGVPAALAQLKAAGLRLAV FT CSSNSLDNVRRVLGPQTGALIDDYECGADLFGKPAKLARLMARHGVERTRCILIGDEMR FT DIDAARKAGVMAGSVAWGYNHVDALRARAPDEIFEQVTDLAAVLAPGFPSFPPTP" FT misc_feature complement(253480..254016) FT /note="HMMPfam hit to PF00702, DE haloacid FT dehalogenase-like hydrolase, score 1.7e-21" FT CDS complement(254019..254621) FT /transl_table=11 FT /locus_tag="BB0251" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0548" FT /protein_id="CAE30749.1" FT /translation="MTHAMPTQPAAPRTTACLLRDYFRAKDENRPLYMARAFAPDAVLK FT MALRTQAIAFPPESHGLAAIADTLSRKFGQTYDNVYTFYLAHPGEHAVLPEFSCDWMVG FT MMDKASGEVRVGCGSYDWVFQAEPHLVKRLTITIESMLTLPADTAGPVFGWLTALPYPW FT TDAQRVVASAPPIESLAPIMYWLRRDVRRADPTGGMA" FT CDS complement(254628..255254) FT /transl_table=11 FT /locus_tag="BB0252" FT /product="putative lysine decarboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0547" FT /protein_id="CAE30750.1" FT /translation="MQLVTSAWTLERVMKIQNICVYCGSNSGRQPEYIEHAQGFARELV FT KRGLGLVYGGASVGIMGAVADTVMAEGGRVIGIIPEALMKKELAHRGLTELHVVQSMHE FT RKTLMAQKADGFVALPGGAGTLEEIFEIWTWAQLGMHQKPCGLLNIAGYYDLLGQFLNH FT TVDEAFMRPQHRAMLAIDHDPAALLDHFASYVAPTVSKWIAPGEH" FT misc_feature complement(254673..255074) FT /note="HMMPfam hit to PF03641, DE Lysine decarboxylase FT family, score 1.5e-59" FT CDS 255396..255965 FT /transl_table=11 FT /locus_tag="BB0253" FT /product="bacterioferritin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0546" FT /protein_id="CAE30751.1" FT /translation="MSSILGVSDMEQSATQPHRAFAVDVKAIRAKARRDIESGAVTEGY FT RADRATVLRLLNEALATEVVCWLRYKRHAFMARGLSAEPVAAEFAEHAAEEQGHADRLA FT ERIVQLGGEPDLSPVGLLERSHAEYVEGKDLKDMIKENLIAERIAIDSYRQMVDYVGEA FT DPTTRRLLEDILAMEEEHADDLSDLL" FT misc_feature 255552..255959 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00210, DE Ferritin-like domain, FT score 8.3e-19" FT CDS complement(256036..257355) FT /transl_table=11 FT /locus_tag="BB0254" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0545" FT /protein_id="CAE30752.1" FT /translation="MSSPKVGFVSLGRPKALVDSERILTQLRTEGYEVTPEYNDADVVV FT VNTCGFIDSAKAESLEAIGEAIAENGKVIVTGCMGVEESVIRQVHPSVLAVTGPQQYEE FT VVRAVHGVAPPRQDHNPYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDL FT VSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPVKTRMTELCAA FT LSELGVWTRLHYVYPYPHVDEVIGLMADGKVLPYLDIPFQHASPRILRAMKRPAFEDKT FT LARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYSPVEGAP FT ANTLDNPVPDEVKQERWERFMEHQQAISTARLSTRVGREIDVLIDSVDEEGAVGRSSAD FT APEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA" FT misc_feature complement(256873..256935) FT /note="PS01278 Uncharacterized protein family UPF0004 FT signature." FT misc_feature complement(257062..257343) FT /note="HMMPfam hit to PF00919, DE Uncharacterized protein FT family UPF0004, score 8.1e-34" FT CDS complement(257463..257654) FT /transl_table=11 FT /locus_tag="BB0255" FT /product="putative 4-oxalocrotonate tautomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0544" FT /protein_id="CAE30753.1" FT /translation="MPTVRVELSPGRSAEQKTRYMQEVTRLTVEILKCPVESVDVIFIE FT IPPTEWAHGGKFYAQPPA" FT CDS 257906..259279 FT /transl_table=11 FT /locus_tag="BB0256" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0543" FT /protein_id="CAE30754.1" FT /translation="MDRPAHRATANPPLRRGGGGAGAMNPDRLLGEPLRLPDSLWAATA FT PAAPALPSLDGRHVADVLIIGAGFTGLSAAIRLCREGRRVIVLDAAEPGWGASGRNNGQ FT VIAGLKQDPEVIETLYPGEAGRRLVRFGSEAPGVVFRLIDEFGIDCAAGNKGWIQPAFT FT GSGLRAVERRCQAWGERGVATRLLQADELARLLGTPRYRLGWLDPRGGHVQPLAYARGL FT ARVALSLGATIFGGARAEALRREAGQWLARCQAGEARAPSVIVATGGYADRLVPGLRTS FT IVPVRTAQVATRVLPEAMRREILPQGHVSSDTRQLLTSFRLSPDGRLVMGGAGATAGLE FT HARIVPFLHRAGAELFAHLGKLDWEYHWSGYFAVTTDHLPHVHEPAAGMHVSLGCNGRG FT IAISTALGIELAERVLGAPAESLSVPVSDLRSVRLHGFRHLGVAAATRYKRLQDRLAM" FT CDS 259350..260345 FT /transl_table=11 FT /locus_tag="BB0257" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0542" FT /protein_id="CAE30755.1" FT /translation="MKGYARENRRRTLLAAALAGCLLAGGTVHADESGADKRPIRLIVG FT FSAGGYTDVIARILAEQLGQSLNRSVIVENRAGANGAIGATAVARSAKDGATVLLSPPG FT LITNTLISPELSYSIQDFAPVARVTSLPNVLVVSANSKYRSLAELLDGARKADGKLTYG FT SGGVGSSNHLSMALLMRQAQVQMLHVPYKGSSLAETDVMAGHVESMFSGAASAIPHVNG FT GRFHALAVSGDKRIGALPDVPTVAQAGVPGYSHGTWLGLFVAAGTPAQAVAGLNQAVNK FT VMADARVQARMTDLGADAFQANTVDEFTAFVQSDLAAQKTLIGNASLSGN" FT misc_feature 259350..259439 FT /note="Signal peptide predicted for BB0257 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 30 and 31" FT misc_feature 259512..260333 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.4e-85" FT CDS 260430..261104 FT /transl_table=11 FT /locus_tag="BB0258" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0541" FT /protein_id="CAE30756.1" FT /translation="MNLVAPMPETAQRKVAGTATERAYGELRKRILEGSLAEGAPIRQD FT EVAADLGISKIPVREALVRLQSEGLVVFTPNAGATVAVLTAADYVEMLDLRLAIECRAL FT ELAVPNMAPSDLAQARRLLDAYSRHENASEWSELNAQFHDCLYAPANRPRLLAMIRSVR FT DHMGKLMRLRVTEAAGHDRSHQEHLKILAACEEGNAARAVALLRKHIEHTQREVQAYFR FT KA" FT misc_feature 260496..260672 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.3e-05" FT CDS complement(261137..261985) FT /transl_table=11 FT /locus_tag="BB0259" FT /product="putative dioxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0566" FT /protein_id="CAE30757.1" FT /translation="MTARVGRVDHPVVAVHDLDRTSQQYRKLGFVVPPSGKHQEWGTEN FT LCIMFPGDYLEIRGIGDPNRFLAGVDKFLAKGEGLYSVAFNAASAQESYQAGLAAGLEI FT EPPRHLNRKLVLEDRTLDLHFETVMLGHDLYPGLTHANLCQHLTADTLRQPGWTDHPNG FT VVAFGRLVGVVSDFDAAAAAYTRLIGAENVTRGDDHILLDFGAGADIELIGPAEAQRRG FT DAQPQLGDAYLASATLLVKDAAATAALFEAGGVRFTRQPGGELKVDPADASGAHLYFKQ FT A" FT CDS 262119..262895 FT /transl_table=11 FT /locus_tag="BB0260" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0567" FT /protein_id="CAE30758.1" FT /translation="MNTPLRVGIVGCGVLANAMAGHLARQPRPVEIVGCLVRDPGRARG FT ALPCHGSWEALLAQRPEVVVECAGQAALAQYAQVILAAGVDLVPASVGALADDALRGAL FT LEAAAAAGARIRIPSGAMVGIDGLAAARHVGVAEVLYRGTMPPVALQRYVSGPLPERGL FT AFAGSAREAVARFPKNANLTGTIALAGIGFDRTRVEMLIDPDATANVHELLARGEFGDF FT HARVSGLRISESSPSSRIVAGSLAQAALGSGFLALS" FT misc_feature 262119..262166 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 262131..262865 FT /note="HMMPfam hit to PF01958, DE Domain of unknown FT function DUF108, score 3.5e-32" FT CDS complement(262941..263570) FT /transl_table=11 FT /locus_tag="BB0261" FT /product="putative amino acid efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0568" FT /protein_id="CAE30759.1" FT /translation="MTLATLALFVLASGLIIVTPGPTVLLALSNGSRHGVRRACWGMAG FT AVLADLVLVAAVAGGLGMLLAASEPAFQALKWIGAGYLAYLGWRLLRSDAALVLPALAA FT GGGDSGAGALFSRSFLVALTNPKALLFMSAFLPQFIDPAAALAPQYGALALVLAVLNLA FT AMLGYAALGARLVRVLRTGGLRWINRLCGGMLVLLAGTVALYRRAG" FT misc_feature complement(join(262956..263015,263052..263120, FT 263163..263231,263373..263441,263484..263552)) FT /note="5 probable transmembrane helices predicted for FT BB0261 by TMHMM2.0 at aa 7-29, 44-66, 114-136, 151-173 and FT 186-205" FT misc_feature complement(263043..263366) FT /note="HMMPfam hit to PF01810, DE LysE type translocator, FT score 3.3e-11" FT misc_feature complement(263490..263570) FT /note="Signal peptide predicted for BB0261 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.963) with cleavage site FT probability 0.729 between residues 27 and 28" FT CDS 263678..265012 FT /transl_table=11 FT /locus_tag="BB0262" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0569" FT /protein_id="CAE30760.1" FT /translation="MPSPVDSSVLAPPLSAVLLGAAAAVQAVRKGRSLTDALAETPPAL FT RPAVQAISFHAMRQLGWADAVAETLVRRSPGPLFDALLRVALSLLRAAPGAAAQPGAPQ FT YAPHTVVDQAVTAAAGQRKLAAYKGLLNASLRRFLREREALQDSVAERPAARWNHPSWW FT VELLERAYPEQWRGILAGANVPAPLTLRVNRRRATVEQARQALAQAGVAAAPVGDAGLV FT LAEPRPVPQLPGYDAGWWSVQDAGAQLAAPLLAPADGMRVLDACAAPGGKTAHLLELAD FT IDLLALDADAQRLERVDQNLERLGLRTPRVRLAAADASDLDAWWDGRPFDAVLADVPCT FT ASGIVRRHPDIRWLRRAEDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQ FT AEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKRT" FT misc_feature 263678..263749 FT /note="Signal peptide predicted for BB0262 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.949) with cleavage site FT probability 0.301 between residues 24 and 25" FT misc_feature 264209..265000 FT /note="HMMPfam hit to PF01189, DE NOL1/NOP2/sun family, FT score 6.3e-64" FT misc_feature 264665..264700 FT /note="PS01153 NOL1/NOP2/sun family signature." FT CDS 265031..265642 FT /transl_table=11 FT /locus_tag="BB0263" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0570" FT /protein_id="CAE30761.1" FT /translation="MLLRICRMSMILRLFVALLLVFGSFSPITSGLAHAADPHVQRIEP FT LVRDGKLELSADIHFELNDQLRDAAQRGVPLYFTADLQITRSRWWWFDHTLVDKSITWR FT IAYNALTRQWRAGAGELSLPVASLDDAMDLVRHIRNWEVADASEFDPGVRYGGQLRVRL FT DTSQLARPFQVNALNSSSWSPATPWAEFSFALAEPARDPS" FT misc_feature 265031..265135 FT /note="Signal peptide predicted for BB0263 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 35 and 36" FT CDS 265639..267948 FT /transl_table=11 FT /locus_tag="BB0264" FT /product="putative two-component sensor kinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0571" FT /protein_id="CAE30762.1" FT /translation="MRMFLRLALVVGGVSGLALLGLLAWSTGNASRFARYYDTLLILNG FT IFAFALFVWVVALTVRLARQIRRRQFGARLTARFALAFALIGVVPGALIYTLSVQFMSR FT SIESWFNVRVDSALESGLNLGRAALDSQLADMDVRARAMAAELNNMSDNDIPLALTRLR FT EANGAQEATVFTGSGRILAFSTNTYGQLLPPSLPATLLNQLRLARGYSAAEADDPAIPG FT AEGGLHLRVVIPLSAPARFDGILGGSAEPRWLQLMHAVPDQIAHNANRVQQGFRDYQEL FT ALSRLGLRKLYGITLTLALLLAVFAAIAVALSLSKRLVRPLLRLAGGTQAVGVGDFRPL FT PEPPERDEVGQLTRSFNAMTRQLEEARQMVESNRRQLERSNVYLESVLSNLSSGVIAFD FT EGFRVTTVNQGAQTILQADLRSVIGRPLETVDGMLEFAQVVRQAFAAHAAVGSERLHWQ FT QQFEITPGLDETGGQPVTLLARGTHLRVDGRGNGYLVVFDDITEVISANRTVAWGEVAR FT RLAHEIKNPLTPIQLSAERLAMKLADRLQPADAQMLIRSTNTIVNQVGSLKQMVDDFRE FT YARTPPAVMQRIDLNALVADVLSLYGWDPGDGGGRGAARVLNLDVELAPGLPDIEGDPT FT QLRQVIHNLLSNARDAVAEQGGEGRVKVTTQIVQSEQPDGAQQRAVRFTVADTGPGFPP FT QVMQRAFEPYVTTKAHGTGLGLAIVRKIIEEHGGRIDLANRKEGGARISILLTRLALPS FT DTMDATAQEKDNAATQ" FT misc_feature 265639..265728 FT /note="Signal peptide predicted for BB0264 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.360 between residues 30 and 31" FT misc_feature join(265657..265716,265744..265812,265873..265941, FT 266512..266580) FT /note="4 probable transmembrane helices predicted for FT BB0264 by TMHMM2.0 at aa 7-26, 36-58, 79-101 and 292-314" FT misc_feature 266524..266733 FT /note="HMMPfam hit to PF00672, DE HAMP domain, score FT 1.3e-12" FT misc_feature 267169..267387 FT /note="HMMPfam hit to PF00512, DE His Kinase A FT (phosphoacceptor) domain, score 1.6e-08" FT misc_feature 267532..267885 FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 5e-35" FT CDS 267959..268648 FT /transl_table=11 FT /locus_tag="BB0265" FT /product="putative two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0572" FT /protein_id="CAE30763.1" FT /translation="MARILVVDDEVGIRELLSEILYDEGHTVELAENAAQARAARLRMR FT PDLVLLDIWMPDTDGVSLLKEWASQGLLDMPVIMMSGHATIDTAVEATRIGAMDFLEKP FT ITLQRLLKTIEAGLARGRAPRAAPPLAHAAATPVAVALEDELDPPQPFQAPVEAPAASN FT GQLGSISLDQPLREARDEFERIYFEYHLVRENHSMTRVSERTGLERTHLYRKLKQLGIE FT SARKRGT" FT misc_feature 267962..268324 FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 1.9e-34" FT misc_feature 268544..268609 FT /note="Predicted helix-turn-helix motif with score FT 1397.000, SD 3.94 at aa 196-217, sequence FT HSMTRVSERTGLERTHLYRKLK" FT CDS 268645..270024 FT /transl_table=11 FT /gene="trkA" FT /locus_tag="BB0266" FT /product="Trk system potassium uptake protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0573" FT /protein_id="CAE30764.1" FT /translation="MKILIMGAGRVGTSVAENLVSEQNDITVIDTDVGQLRYLQDRFDL FT RVVQGDGIQVSVLESAGADDTDLFIACAASDAANLVACKIAREVFNVPRRIARIRMPEF FT ADHPELMSDEGFAIDALISPERSVTTYLHSLIEFPEALQVVEFAGGRVSVITVRVGHGS FT PMAHHPVDELREVWPDVTARIVDVLRDGRPLHAGTGTVVAPGDEVVLAVDTRHARRAVR FT QLREAEKTVHRVMIAGGGNIGLRLARQLAEEGYSVRIIEHDAKRCEYLAAELPDNVLVL FT HGNGTDEALLERENIEDMDTWLALTSDDEDNIMSSLLAKRLGARKVIALINRQAYGELM FT QGSHIDVAVSPSQATMSELLRHVRRGDVVAVHRLRQGVAEALEAVAHGDRSTSRVVGRA FT VGKIGLPKGASIGVLVRGDEIIVPDADTEIQSDDHVIVFVPSRRQMPRVEKLFQVSASF FT F" FT misc_feature 268648..269016 FT /note="HMMPfam hit to PF02254, DE TrkA-N domain, score FT 3e-22" FT misc_feature 269059..269328 FT /note="HMMPfam hit to PF02080, DE TrkA-C domain, score FT 0.0001" FT misc_feature 269341..269697 FT /note="HMMPfam hit to PF02254, DE TrkA-N domain, score FT 2.5e-27" FT misc_feature 269740..270012 FT /note="HMMPfam hit to PF02080, DE TrkA-C domain, score FT 3.9e-11" FT CDS 270073..271542 FT /transl_table=11 FT /gene="trkH" FT /locus_tag="BB0267" FT /product="Trk system potassium uptake protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0574" FT /protein_id="CAE30765.1" FT /translation="MKRLLATFYVLGLTMVVFALTMVIPLAVAYIGQDAGFTAFLEGFL FT LALGIGAGTWLATRRGRSELHARDGFLLVSTVWAALPALAAIPLLLYYDDVGIPLSFTD FT AYFEAMSGLTTTGATVLSGLDALPASINLWRATLIWIGGMGILVLAVAILPLLGVGGHQ FT VVRAETPGPMKDERLTPRIASTAKALYAVYFGFSMVCLLAYRAVGLSWFDAWCHMATTM FT GLGGFSTYDDGFAHFDSLSVELVAIVFMTISGINFATHFNALRQRNWRAYVVCPQTIPY FT LTVMLGAGLVISVFLYIKGVYGDPWEALRYGMFNTISVATTTGYANVDYASWPLFAPLT FT MLLLSAFVTSAGSTGGGIKMIRIILLVKQARNELVTMLHPHAVSPVRIGSRVVDQRVMA FT SVLAFMLVYGLSVGVLSSLLLLSGLDLITAFSAVMAMINNTGPGLGPLGPMGNFSVLND FT FQTWVCTFAMLIGRLELLTVLVLFTPLFWRK" FT misc_feature 270073..270159 FT /note="Signal peptide predicted for BB0267 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.611 between residues 29 and 30" FT misc_feature join(270097..270165,270175..270243,270280..270348, FT 270481..270549,270640..270708,270787..270855, FT 270913..270981,271078..271146,271267..271335, FT 271465..271533) FT /note="10 probable transmembrane helices predicted for FT BB0267 by TMHMM2.0 at aa 9-31, 35-57, 70-92, 137-159, FT 190-212, 239-261, 281-303, 336-358, 399-421 and 465-487" FT misc_feature 270262..271533 FT /note="HMMPfam hit to PF02386, DE Cation transport protein, FT score 7.3e-79" FT CDS 271622..272155 FT /transl_table=11 FT /locus_tag="BB0268" FT /product="probable MarR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0575" FT /protein_id="CAE30766.1" FT /translation="MPEPDKQATRKKRTTSSLTDSTVFDPAKQVLWSRPGYLVRRLNQI FT HYALFYEECKTQNVTPVQYGVLTALSLSPWLDQTAIGMELGLDRTTTADVIKRLQERGL FT VERRVNPNDKRSRQAVITQEGLRIMGLLQGGMARAQQRLLEPLSPRNREIFMKLLSTLV FT DANNQYSRTALKAM" FT misc_feature 271796..272107 FT /note="HMMPfam hit to PF01047, DE MarR family, score FT 5.2e-20" FT CDS complement(272163..273158) FT /transl_table=11 FT /locus_tag="BB0269" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0576" FT /protein_id="CAE30767.1" FT /translation="MNALDLDVLQHARDWLASGRRVHLVTVVQTWGSAPRQAGAMLAVR FT DDGQVVGSVSGGCIEDDLIARARAGTLPERAERLTYGVTRDEATRFGLPCGGTLRLVAE FT PLAPRDAWLDEVLQAIAEHRLVRRTIDLHTGAAALEAAAPAEGPDFDGRMFRAVYGPHW FT RLLIIGANQTAQVLADIAATLDFQVIVCDPREEFHAAWHAPHATLVTTMPDDTVLEIGT FT DERTAIVALTHDPKLDDMVLLEALKSRAFYVGALGSRANQEKRRERLRLFDLGDEDIAR FT LRGPVGLPIASRTPAEIAVAVAAELVWVRNTLGDREPSGAPLPAALAPAR" FT misc_feature complement(272211..273122) FT /note="HMMPfam hit to PF02625, DE Uncharacterized BCR, FT COG1975, score 1.2e-33" FT misc_feature complement(272985..273017) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 273241..273891 FT /transl_table=11 FT /locus_tag="BB0270" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0577" FT /protein_id="CAE30768.1" FT /translation="MPRVDHGSPQAGPPAPCVGILLAGGQGRRFAAASGGQDKLLARLA FT DGTAVAVRAAAALREATDAVVAVVRPESAVLAALLRGQGCHVLESEQAREGMGASLAAA FT ARFLLAGQVPDMPERADVCLVALADMPWVRRDTLSAVRAAACADGITVPVHQGRRGHPV FT AFGRSLWGELAALRGDVGARELLRRHRVAAVEVDDPGVAADVDTPGDLAGDRA" FT CDS 274215..275177 FT /transl_table=11 FT /locus_tag="BB0271" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0578" FT /protein_id="CAE30769.1" FT /translation="MTKVRKIAFEEHFTAVGFGDYSKAFVQHLDPGFAAELGARLTDFG FT AGRLAEMDAAGIDYAILSQTGPGVQGEPDAAVALRRARENNDFLAERIARHPDRFGGFA FT ALPMHDPKTAAAELTRAVRELGFKGSLVNGHTNGVYYDDPAYDAFWEQMQELDVPLYLH FT PFDAYVLPHAYKGHPELAGATWGWGVETGTHALRLLFGGVFDRFPKLKIILGHMGEGLP FT FQRWRFDSRFAAYPYGVKLQRAPSEYIGSNILITTSGVCSHPTLVGAIAEMGAEAVMFS FT IDYPYESTALAVEFIESAPLDAATRELVCYGNAARLFKL" FT CDS 275203..275955 FT /transl_table=11 FT /gene="maiA" FT /locus_tag="BB0272" FT /product="maleate cis-trans isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0579" FT /protein_id="CAE30770.1" FT /translation="MQKTYRIGQIVPSSNTTMETEIPAMLLARQQIRGERFTFHSSRMR FT MKKVVKEELAAMDAESDRCAVELSDARVDVLGYACLVAIMAMGRGYHRQSQARLTAHTA FT ANGGEAPVITSAGALVDGLKVMGAKKIAVVAPYMKPLTELVVDYIGNEGYEVVDYRALE FT IADNLEVGRHDAGRLPEIVAGLDYREADVIVLSACVQMPSLGAIAKVEAQTGKPVVTAA FT VATTYAMLKALGLEAVVPGAGALLSGAY" FT CDS 275975..276796 FT /transl_table=11 FT /locus_tag="BB0273" FT /product="probable alpha/beta hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0580" FT /protein_id="CAE30771.1" FT /translation="MSNFRYGGNVQANGIRQHYLRYGGERAGRDPVIIVPGITSPAVTW FT GFVGERFGEQFDTYILDVRGRGLSQSGPQLDYGLDAQAEDLLAFARALGLSRYSVVGHS FT MGARIGIRAARTGEAGLARLAMVDPPVSGPGRRAYPSKLPWYVDSMAQARQGMTGEQMK FT AYCPSWTAEQLQLRAEWLHTCEERAVIASFEGFHEDDVHADLPRVRAARLLMTAERGEV FT VLDADVAEIEALAPGTAHVRVAGAGHMIPWDNEEGFYAAFGDFLGARLRAG" FT misc_feature 276140..276772 FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 2e-09" FT CDS 276824..277855 FT /transl_table=11 FT /locus_tag="BB0274" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0581" FT /protein_id="CAE30772.1" FT /translation="MPVSDYEMIRAWTQVLSLSRLQAGQTVTVLTSAATHPQTLGTALV FT AAQSLGAVVNRLDLPPVNGEKALSRDALAYLGTTPLTGNKAAIAMLKASDLVLDLMTLL FT FSPEQHEILQGGTKILLAVEPPEVLARLVPTEGDRQRVKAAAERIAGAREMTVESEAGT FT RLRCGLGEFPAISEYGYVDEPGRWDHWPSGFALTWPDEGSANGTIVIDRGDILLPQKSY FT VSEPIVLTVENGYATRIEGGLDAELLREYVATFKDPQAYAISHIGWGLQPRASWTTLGL FT YDREATIGMDARAYEGNFLFSLGPNNEAGGSRTTACHIDIPLRRCTVRLDGREVVREGK FT VLD" FT CDS 277871..278488 FT /transl_table=11 FT /locus_tag="BB0275" FT /product="putative isochorismatase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0582" FT /protein_id="CAE30773.1" FT /translation="MGNDLGSYERQGFGAALPLKAPYGLLIVDFVNGFADPAQFGGGNI FT AAAIETTRTVLAAARERGWAVAHSRIVYADDDADGNIFSIKVPGMLTLKEHAPASAIVP FT QLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMSAGF FT RPLVLSDCVGDRALGPHEANLFDMRQKYAAVMTHDEALAKTK" FT misc_feature 277922..278476 FT /note="HMMPfam hit to PF00857, DE Isochorismatase family, FT score 1.4e-07" FT misc_feature 278288..278320 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(278605..279120) FT /transl_table=11 FT /locus_tag="BB0276" FT /product="probable ring hydroxylating beta subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0583" FT /protein_id="CAE30774.1" FT /translation="MSQTFFPPRTIDPARAIALKLEVEEFNADYCAALDGGQVESWPDF FT FTETALYRVTARENAELNLPVGLVYAEGRDMMHDRAVAISRTQMFAPRYMLHMVSNTRV FT TSETPDGEIAASSTFLLMQTLVEGPTTLHLAGSYHDRFVRENGALKLQERQVIYDTAIL FT ANDLVYPV" FT misc_feature complement(278623..279027) FT /note="HMMPfam hit to PF00866, DE Ring hydroxylating beta FT subunit, score 3.7e-06" FT CDS complement(279135..280424) FT /transl_table=11 FT /locus_tag="BB0277" FT /product="probable Ring hydroxylating alpha subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0584" FT /protein_id="CAE30775.1" FT /translation="MYQSQTVIGRTLAAKDAPLSECAWPQDALHFIPDWVYTNNAVYEQ FT ELEKIFHGKTWNFVALEAELPNAGDYKRSYVGATPVVVSRAEDGSINVFENRCAHRGAE FT FCRHNQGNAKEFVCPYHQWSYDLKGNLQGIPFKRGVNREGGMPKDFKNDEHGLRRLHVT FT TRNGVVFASYSSEVEPIAEYLTPEILADFDAVFPGKKLKILGYYRNELPCNWKMYHENL FT KDPYHATLLHSFLVVFGLLVAGNKSAMLVDSVHGRHGTMASAKSEDKYATVSEENKKEM FT RSFHDGLRLRDDRFLEFIKEFDSPWSVTMQTIWPNLIVQREMNTLGVRHIIPNGPDSMI FT MQWTMFGYEDDTEEMQRHRLRQGNLMGPAGFLGLEDNEAMKFVQEGVRRASTDVNVIKL FT ESGKQGTSNTLISEAAIRSMYSYYREVMGF" FT misc_feature complement(279141..279887) FT /note="HMMPfam hit to PF00848, DE Ring hydroxylating alpha FT subunit (catalytic domain), score 0.00016" FT misc_feature complement(279924..280262) FT /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain, FT score 1.7e-31" FT misc_feature complement(280062..280133) FT /note="PS00570 Bacterial ring hydroxylating dioxygenases FT alpha-subunit signature." FT CDS complement(280460..281722) FT /transl_table=11 FT /locus_tag="BB0278" FT /product="putative ferredoxin reductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0585" FT /protein_id="CAE30776.1" FT /translation="MDEIQSIVIVGAGQAGAVAAASLRQLGYRGGLTLIGQEAHPPYER FT PPLSKAVLQGTATHAEAAVHPAGFYAENDIALLTETAVAALDPIARTVRLADGRTLPYD FT RCLLATGGHARELPALPRGRAGVHYIRTLNDALDLRAALRPGVRAAVIGGGFLGLEVAS FT TARELGAEVTVIENGSRLLERALPAIVSDWLAERVRASGVDLRLGGAIAAIGDGPPYAI FT TLADGTQVNADLIVVSIGLAPEVTLARQAGLPLDDNGGICVDAQARTADPHVYAAGDCA FT SQPRACLGTAARFESWQNANEQARAAAAAMLGLAPAAEPYPWFWTDQYGCNIQILGLPQ FT PGLRYVCRPQTDPQAAPRVLWIGLRDGVPCHGIAVNAGGDLRQLRVLFERGIPVDPHRL FT ADPAEALKPLVKAWQAAVAVA" FT misc_feature complement(280853..281707) FT /note="HMMPfam hit to PF00070, DE Pyridine FT nucleotide-disulphide oxidoreductase, score 9.4e-78" FT CDS complement(281725..282036) FT /transl_table=11 FT /locus_tag="BB0279" FT /product="ferredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0586" FT /protein_id="CAE30777.1" FT /translation="MNWIKIATTDQLEDDEVMPVTAGEAKLALYRSEGEYFASDNVCTH FT AYALLSDGYLEDGCIECPLHQARFDIKTGKAMCAPATADIRIYPLKIENDDIYVDLQA" FT misc_feature complement(281752..282033) FT /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain, FT score 4.7e-22" FT CDS 282506..283609 FT /transl_table=11 FT /locus_tag="BB0280" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0589" FT /protein_id="CAE30778.1" FT /translation="MQRRRFLAQAAGAAGAGLAAVGMPAMAQANPTVRWRMSTSWPKSL FT DTIYGSADELCKRVGQLTDGKFEIRAFPGGELVPSAQNMDAVSNGTVECNHVLSTMYIG FT KNTALTFDTGLSFGLNARQHNAWIHYGGGLQQLRELYKKYNIVNHVCGNVGVQMGGWYR FT KEIKSTADLNGLNMRIGGIGGMVLSKLGVVPQQIPPGDIYPALEKGTIDAAEWIGPYDD FT EKLGFNKVAPYYYSPGWFEGSASITSMVNDKAWEALPPAYQAAFEAACGEQSMRMLANY FT DARNPLALRKLIAGGAKVSFFPKEVMDAVYKASQQLWTELSEKNPDFKAIYPGWKKFQE FT DEAGWFRVAENALDNYTFAAVARAQAK" FT misc_feature 282506..282586 FT /note="Signal peptide predicted for BB0280 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.666 between residues 27 and 28" FT misc_feature 282614..283480 FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 8.6e-65" FT CDS 283639..286017 FT /transl_table=11 FT /locus_tag="BB0281" FT /product="oxidoreductase, large chain" FT /note="ortholog of Bordetella pertussis (BX470248) BP0590" FT /protein_id="CAE30779.1" FT /translation="MTTEHTGAEVGAGSRQGVGARVPRKEDARHLHGKGNFVADMAMPG FT LCEVAFLRSPLAHARITDVRVPESVRDKVVLRSMMGDARDIAADSTLPTYQPSVQPPLA FT SGKVRFVGEPVAMTFAPTRAEAEDHAELVEVDYDDLPVYADVASAQQATSDLVHEHWRD FT NVFVTLNADRDFDEHAARAEVVVKRKIDLARQCMVPMEGKAVLAYWDHQADQLVVISAT FT QVPHMIRSVLAQCLDLEQGRVRVVSPDVGGAFGYKCVLQQEELCVAWLAKTYKRPFRFI FT EDRREHLTAGANSREHHYEMTAYADKRGKLLALDARITIDGGAYSVWPFTIGLEPGQAV FT GNLPGPYGFRGYRCETRCVATNKPGFVPYRGVARTGVCFAIELTMDAVAREVGREPWEV FT RLENLVQPEQMPYVNVTNKHFDSGDYPASLRKALEMIDIDGVRTRQARGEADGRRIGVG FT VATYTEQAAHGTSVFAAWGTPVIPGFDQATVRVTPDGGLEVRVGVHSHGQGMETTFAQI FT AHEILGIDVARIKVLHGDTGQTPFSTGTYASRSLVMSGGAVSQACKRLLPRMRHIAAHM FT LGVADDAVTLQDGIYRAGEKSVATGDVADAWYLRPQLLPPDVDPAGLEVNVGYKPKVDT FT GCFTYASHAAVVAVDPDTGAVEILDYVVVEDCGTMINPMVVEGQTIGGIAQGIGTAFYE FT ETPYDANGQPLASTLADYMLPGPTEVPNMRLHHFETPSPHTEFGAKGMGEGGAIAPPAV FT LFNAVNDALRGLGAAELSRTPLTPIRVLQAIAQGAGEAA" FT misc_feature 283732..284064 FT /note="HMMPfam hit to PF01315, DE Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain, score 4e-16" FT misc_feature 284077..285801 FT /note="HMMPfam hit to PF02738, DE Aldehyde oxidase and FT xanthine dehydrogenase, molybdopterin binding domain, score FT 1.1e-126" FT CDS 286014..286850 FT /transl_table=11 FT /locus_tag="BB0282" FT /product="oxidoreductase, medium chain" FT /note="ortholog of Bordetella pertussis (BX470248) BP0591" FT /protein_id="CAE30780.1" FT /translation="MKAAQFEYFRAESTQQALQWLLQHDGRAKLMAGGQSLGPMLNLRL FT ARPPVVIDISGVPALREVGERGGRVRVGAAVTHAEIEDGVHAALRGSALQQVATGIAYR FT AIRNRGTVGGSLAHADPAADWVLTMVALGADIEIAGVDGERMVPAESFMQGAYTTVVGE FT GELIAAVHVPAMTDGARWGYYKFCRKTGEFAEASCAAWFEPARRVARIAVGALDGAPCL FT LPGLADAVARQGAAALQAERIDEAVAQAMPGKDALHRKLHATAVARCLKQALGVQE" FT misc_feature 286023..286538 FT /note="HMMPfam hit to PF00941, DE FAD binding domain in FT molybdopterin dehydrogenase, score 9.2e-27" FT CDS 286847..288034 FT /transl_table=11 FT /locus_tag="BB0283" FT /product="putative iron-sulfur binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0592" FT /protein_id="CAE30781.1" FT /translation="MTMVQVTLEVNGRQVAHEAPPRMHLGDFLRDQARLTGTHLGCEHG FT VCGACTVLVDGQPVRSCITYAVACEGRQVTTIEGYDGDPVMARLRAAFTKYHALQCGYC FT TPGMLTTSRDIVLRLPDADEARVRVELSGNLCRCTGYMGIVGAVMSVLRDLREQPDAAV FT QALRAAAADGRLPAPRGEQPIAFQPFTPSAPAAAQAAPRPAAAASPASGKGNQIVDAFT FT VPFPAAEVWAFMVDLPAVAACLPGAVIEETDGQRVKGKIAIKFGPMAAAFNGAARLERD FT EAAMRAVFRGAGQDSLSQSRATGDIAYQVEAVSENETRVKVDLQYALQGPLAQFSRSGL FT VQDFVRRMIADFGKNVTARLRQPGGEALPQAQFNPVAMFFSVLWMRVKRWFGRGG" FT misc_feature 286868..287050 FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 7.2e-10" FT misc_feature 286970..286996 FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature 287072..287296 FT /note="HMMPfam hit to PF01799, DE [2Fe-2S] binding domain, FT score 2.3e-23" FT CDS 288069..289100 FT /transl_table=11 FT /locus_tag="BB0284" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0593" FT /protein_id="CAE30782.1" FT /translation="MEMQKAIGKWWRRAMGGIALLAAAAGTAGAQAPEPLRVRLDWTPW FT GVQAAFHLAQQKGWYKQAGLDVTLEDGNGSVTTVQIVGGSDRFDLGHAALASMMIARDK FT GLPVKAVAVFARHSDIGLLVPDDSGIAGPEQLKGRKVAYTAGSLEAPFIDAFLARGKLK FT KSDLELINVDAASKASTYAVGRADAAFSTIPFFLPVVSQNRPSRAVRFADFGLDMPSFG FT LFASEDKLRERGEAIGRFASVSARAWEYIYAGHEDEAVSAILAQRPQARLDRAVLRGQI FT DALRGYFGLAAGQRVGAPVPADWEQAVRTLSSVGLVRADAKAADFYVPDLVRPQRYDAL FT VKP" FT misc_feature 288069..288158 FT /note="Signal peptide predicted for BB0284 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.641 between residues 30 and 31" FT CDS 289097..289885 FT /transl_table=11 FT /locus_tag="BB0285" FT /product="probable ABC transporter, ATP-binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP0594" FT /protein_id="CAE30783.1" FT /translation="MSVAAVSAAGVRKKYPGERGVQALETISVDVPAGRFVSILGPSGC FT GKSTFLRCVAGLETISEGELRVAGQPVKGPPDGIGMVFQRDALLEWRNIRRNILLPVEF FT AGKPVARYRDKVDALLRLTGLAAFADNYPRELSGGMRQRAAICRALVDDPALLLMDEPF FT GALDALTRDQMNVELQRIWMETRNTVMFVTHGIAEAVFLGDEVMVFSPRPGRVLETIRI FT DLPRPRPLAVRETAEFGRYVRHIRGLFEQMGLIDEGGRAP" FT misc_feature 289196..289732 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1e-46" FT misc_feature 289217..289240 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 289502..289546 FT /note="PS00211 ABC transporters family signature." FT CDS 289882..290421 FT /transl_table=11 FT /locus_tag="BB0286" FT /product="ABC transporter, permease component" FT /note="ortholog of Bordetella pertussis (BX470248) BP0595" FT /protein_id="CAE30784.1" FT /translation="MTATGRKCLHAAAGAVSLAVFLLLWEGLGRALEVRPIMLPLPSQI FT ALELAAEWRWYADQAWYTLMTTVAGFAVAVVGGVLIAVMLVSSRWCESFLYPLIVALNS FT VPKVAIAPLFVIWLGTGAEPKIAIAFLIAVFAVIVDTVRVFAALTVLAVMGMALFALLV FT WFERKATPWRTPVEGH" FT misc_feature join(289900..289968,290074..290142,290161..290229, FT 290239..290298,290311..290379) FT /note="5 probable transmembrane helices predicted for FT BB0286 by TMHMM2.0 at aa 7-29, 65-87, 94-116, 120-139 and FT 144-166" FT CDS 290461..291090 FT /transl_table=11 FT /locus_tag="BB0287" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0596" FT /protein_id="CAE30785.1" FT /translation="MRALLALSRGIDALNLRVGRAVTWVTLLVVLVSAGNAVVRKVFHS FT SSNAWLELQWYMFGAMFLLTAGYTLLKNEHVRVDILSSRLPRHKQIWIEIFGVVFFLLP FT ACILIMVLSWPVFMDSYLSGEQSSNSGGLIRWPVKLLIPVGFALLVLAGLSHLIKCIGF FT LRGQCPDPTAREGSKSAEELLAEEIAREALEREASVQEQRNNHEGR" FT misc_feature join(290521..290577,290620..290673,290731..290799, FT 290857..290925) FT /note="4 probable transmembrane helices predicted for FT BB0287 by TMHMM2.0 at aa 21-39, 54-71, 91-113 and 133-155" FT CDS 291093..292751 FT /transl_table=11 FT /locus_tag="BB0288" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0597" FT /protein_id="CAE30786.1" FT /translation="MEFLIANLAPIMFATLVLFLLLGFPVAFALAANGILYGLVGIELD FT LLSPALFQALPQRVFGIISNDTLLAVPFFTLMGLVLERSGMAEDLLETIGQVFGPLRGG FT LAIAVVFVGAMLAATTGVVSASVISMGLISLPIMLRYGYDRRLASGVIAASGTLSQIIP FT PSLVLIILADQLGRSIGDMYRAAMVPGFVLAGLYIAYVVVVSLVKPSAAPALPEEARRF FT REPNGSRGGRSLLVLMLISSLSAYVLGQWLENDTAPVDEQVVVSLLLWGLTAFVIAIAN FT KVFRLKMLSALAERVTFVMIPPLFLIFLVLGTIFIGVATPTEGGAMGAVGAIIMALIRR FT RLTLELLKQAMDTTTKLSCFVVFILVGSTVFGLTFRGVNGDLWVEHLLIGLPGGEWGFL FT IVVSVLTFVLAFFLDFFELAFIIVPLLGPVADKMGIDLIWFGIILAVNMQTSFMHPPFG FT FALFYLRSVAPKDAYKDKITGKVIQPVTTGQIYWGSVPFIVIQLFMVAAVMLFPGMVMH FT YKGGQSTVDPASVKIEVEGGYGGSVYGGGDATPFK" FT misc_feature 291093..291185 FT /note="Signal peptide predicted for BB0288 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.703 between residues 31 and 32" FT misc_feature join(291129..291197,291267..291335,291372..291440, FT 291453..291521,291540..291608,291636..291704, FT 291780..291848,291876..291944,291978..292046, FT 292056..292124,292161..292229,292272..292331, FT 292350..292418,292446..292499,292560..292628) FT /note="15 probable transmembrane helices predicted for FT BB0288 by TMHMM2.0 at aa 13-35, 59-81, 94-116, 121-143, FT 150-172, 182-204, 230-252, 262-284, 296-318, 322-344, FT 357-379, 394-413, 420-442, 452-469 and 490-512" FT CDS 293100..294341 FT /transl_table=11 FT /locus_tag="BB0289" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0598" FT /protein_id="CAE30787.1" FT /translation="MEQIPFVSSAPNTLGIELELQLVDPRSFDLAAASDELLAQLANHP FT IADRVKPEITRSMIELNSSVHEHPAGLLAEMREMRDVLCEAADAVGVGVTGGGAHPFMR FT WQDRAISDTPRFQYLAEMYGYLARQFTVFGQHIHLGVPSGDAAVRMVRGLSPYVPHFIA FT LSAASPYCEGVDTLFSCCRLNAVNSFPLAGHMPADVTDWYRFEAHLAQLRASGLAESIK FT DLYWDIRPKPEYGTVEIRVCDTPLTVERACQLAAFAQALAVQVARDPEPSQQAWLAYRS FT NHFQACRFGLHGSYVTPDGQRVRLVDHLRALFDRLAPVAEELGTGDMLQTLRDEILRNG FT NDARWLRGQFLKVRELPLVVESMAQNWRGQGVQDTPPSAVRRRIRATSEPVGGVCALST FT PQGDPLPGWAERLH" FT CDS complement(294357..295391) FT /transl_table=11 FT /locus_tag="BB0290" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0599" FT /protein_id="CAE30788.1" FT /translation="MRNNVGHGPPGSLDAGVRPMALITSCLPAPVGGTAIQMSLPPSLP FT SLPIVAADVVRQFSRRGDLAQAQFLYGEVAQRMMGRLRYIRLQPAALLDAGCGAGASLP FT LLRDRFPNAAYTGLDAAEPLLAHARQAWTPGGVAAWLGRLAQRGKPAVSFVRADLAASG FT LPPEQLDLVWSNLALHWHPEPHAVLAEWRRILKVGGLAMFSCLGPGTLRELREALADAG FT LRTATPAFVDMHDFGDLLVENGFADPVMDQETLTLTYETPQRLLEDVRALGGNPARGRR FT AGLAGRAWLDRLHAALEARRGPQGRISLSIEVAYGHAWRAPARRTAPGETHLSVSAIGG FT RRAG" FT CDS 295488..296102 FT /transl_table=11 FT /locus_tag="BB0291" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0600" FT /protein_id="CAE30789.1" FT /translation="MAALGPATPRCPCCAVRLAPRARHCADCLRLRPAYQRVVAALDYA FT GPYRGLISRYKTACRHELALALADLMLRAIRQADPPLRGPCLLVPVPASAASLRRRGFN FT PAAELAAALAARLGWPLARTQLRPARVPAGRQTLRGRRDRLRGATGRWRALPVPAGATV FT ALVDDVVTTGATAHCAARALLAAGAGRVIVLAAARTPASHG" FT CDS 296129..296647 FT /transl_table=11 FT /locus_tag="BB0292" FT /product="rRNA methylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0601" FT /protein_id="CAE30790.1" FT /translation="MAVFPSCTRRPRAHPAMFHVVLVSPEIPPNTGNAIRLCANTGAQL FT HLVRPLGFELDDARLRRAGLDYHEWQPVQVHDTLPQALAATGAAAARVFALTTRAPASL FT ADMAFQAGDVFVFGRETAGLSEAHMALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAW FT RQSGYAGSI" FT misc_feature 296177..296608 FT /note="HMMPfam hit to PF00588, DE SpoU rRNA Methylase FT family, score 1.8e-36" FT misc_feature 296222..296251 FT /note="PS00449 ATP synthase a subunit signature." FT CDS complement(296666..297661) FT /transl_table=11 FT /locus_tag="BB0293" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0602" FT /protein_id="CAE30791.1" FT /translation="MLERLARAGRLLRRLCAPLAVAALLPAAAHAAWPERPIHLVVPFP FT PGSSPDLLARTIAEPLSQALQQSIVIDNKPGAGGNIGTRMVAQAKPDGYTLLYTINGPL FT VTAPTLYKRTLGYDPLKDLAPVTLVATSPNVLTVPASLPVDNVQDFVKLARERAGALNY FT GSVGPGSSAHLAMEMFKHEAGIDLTQIPYPGFPQVITAIIGGDVHAGFMVPAIAMPHAR FT DGKVKTLAVTSLEPSDALPGIPTMASQGYPGFEAISWNAILAPAGTPAPIVERLNRELA FT TIIDSDAVRKQLAVQYFTPAPSSPQALTERIQAEKARWDQVIGRLNLSLD" FT misc_feature complement(296678..297505) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.2e-91" FT misc_feature complement(297569..297661) FT /note="Signal peptide predicted for BB0293 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 31 and 32" FT CDS complement(297716..298771) FT /transl_table=11 FT /gene="gpsA" FT /locus_tag="BB0294" FT /product="glycerol-3-phosphate dehydrogenase [NAD(P)+]" FT /EC_number="1.1.1.94" FT /note="ortholog of Bordetella pertussis (BX470248) BP0603" FT /protein_id="CAE30792.1" FT /translation="MSQARPATLRVAVLGAGSWGTALAAAASRRHPTVLWARDGAQAQA FT MAARHENTRYLPGVALPPALQVSADLAQALAHLAHDPAHALIILGVPVAGMTPLCTELA FT ARLPALGLQAVPLVWTCKGFEEQTARLPHETVQAALGAMPGLAAGVLSGPSFAREVAQG FT LPVALTVASESSAVRDAVTTALHGAAVRIYASTDVVGVEVGGALKNVIAVACGICDGLA FT LGTNARAALITRGLAEMARFGAALGAQQETFAGLTGLGDLVLTATGELSRNRRVGLEIG FT AGRKLADILASGMTAEGVRCARAARDRARALNIELPITEAVCAVLFEGLSPMTAVSALL FT AREARPESPTP" FT misc_feature complement(297755..298750) FT /note="HMMPfam hit to PF01210, DE NAD-dependent FT glycerol-3-phosphate dehydrogenase, score 7.5e-108" FT misc_feature complement(298094..298159) FT /note="PS00957 NAD-dependent glycerol-3-phosphate FT dehydrogenase signature." FT misc_feature complement(298700..298771) FT /note="Signal peptide predicted for BB0294 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.824 between residues 24 and 25" FT CDS complement(298787..299314) FT /transl_table=11 FT /gene="secB" FT /locus_tag="BB0295" FT /product="protein-export protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0604" FT /protein_id="CAE30793.1" FT /translation="MADQDQTNQQAGSDAPSFNLQRVYLKDLSLEMPNAPHVFLEQEAP FT QVEVSINVGGQRLAETVFESTVTVTVTTRVNDKVLYLVEGTQAGIFELANIPAEQMDPL FT LGIVCPTMLYPYLRANVADAITRTSLPALHLAEVNFQALYEQRLAEMAQQQPDAANGND FT SGIILPPGATRQ" FT misc_feature complement(298856..299314) FT /note="HMMPfam hit to PF02556, DE Preprotein translocase FT subunit SecB, score 7.7e-33" FT CDS complement(299368..299661) FT /transl_table=11 FT /gene="grxC" FT /locus_tag="BB0296" FT /product="glutaredoxin 3" FT /note="ortholog of Bordetella pertussis (BX470248) BP0605" FT /protein_id="CAE30794.1" FT /translation="MPAIPSPPGATMQKVVMYSKDYCPYCARAQALLKQRGVADLEIIR FT IDQDPSQRDIMIERTGRRTVPQIFIGETHVGGSDDLQALDRSGGLLPLLNGG" FT misc_feature complement(299446..299622) FT /note="HMMPfam hit to PF00462, DE Glutaredoxin, score FT 1.4e-14" FT misc_feature complement(299563..299619) FT /note="PS00194 Thioredoxin family active site." FT CDS complement(299662..300012) FT /transl_table=11 FT /locus_tag="BB0297" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0606" FT /protein_id="CAE30795.1" FT /translation="MLMLPALRKGRAGAAVGTSEAIQMVNQRQAVWVDVRPTEQFQAGH FT IAQARSLPAADLEKKAGALPKNKPLIVVCEQGRDAARIAARLRSQGFAEVSVLEGGMRA FT WFAAGLPVTQKG" FT misc_feature complement(299689..299964) FT /note="HMMPfam hit to PF00581, DE Rhodanese-like domain, FT score 5e-20" FT CDS 300237..300989 FT /transl_table=11 FT /gene="gpmA" FT /gene_synonym="gpm" FT /locus_tag="BB0298" FT /product="phosphoglycerate mutase 1" FT /EC_number="5.4.2.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0607" FT /protein_id="CAE30796.1" FT /translation="MYKLVLMRHGESQWNLENRFTGWTDVDLTETGREQARKAGELLKR FT EGYAFDLAYTSVLKRAIRTLWIALDAMDAMYTPVGINWRLNERHYGQLQGLNKAETAAK FT YGDEQVLIWRRAYAIAPEPLDLEDPRHPRFDGRYAKIPADQLPATECLKDTVARVLPFW FT NESIAPAIRAGRRVLVAAHGNSLRALIKHLDNVSDDDIVGVNIPTGQPLVYELDEDLKP FT IRHYYLGDAAEIEAAMAAVAAQGKAKKD" FT misc_feature 300240..300914 FT /note="HMMPfam hit to PF00300, DE Phosphoglycerate mutase FT family, score 2.5e-126" FT misc_feature 300252..300281 FT /note="PS00175 Phosphoglycerate mutase family FT phosphohistidine signature." FT CDS 300993..302558 FT /transl_table=11 FT /locus_tag="BB0299" FT /product="putative peptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0608" FT /protein_id="CAE30797.1" FT /translation="MRVAAGLLVWAAVAVAPPAAWAVSDLAGRQSEAERQQAALRDRID FT ALQKEIDTREAARKEAADALKESESAISRINLRLRELGETSRKAEAELAGLEKQVVAQQ FT AVLQKRRAELADQLRTQYTSGLSPWTALLSGDDPQQLGRNLGYLDYVSRARAQAVHALR FT EDIARLAALQGQADARRDDIQTLVAETSSQKAALVEQQKTRATLLAKLEGQIAAQRAEA FT GKLGRDDQRLSHLIDDLGSAIARQAEEDARRRAAEEARRKEEEARQAEAARRAEAARQQ FT EAARQAAAAREADARRQAETARQAQQARDAEARDAAAAREQAEAAARQGRGPVALADPD FT AAGLRQVEGGRLVDPQAAPPRETRPAARAEPAEPAPREAAPARTASAAPVGGGNGLRRG FT LPMPVRGTIQGRFGVDRPDGGVWRGLVLRTAEGTPVKVVAPGTVVYAEWLRGFGNLIIV FT DHGQQYLTVYAYNQSLLKRVGDRVAAGDTIATVGATGGQVESGLYFEIRHRGAPVDPAQ FT WLAQ" FT misc_feature 300993..301058 FT /note="Signal peptide predicted for BB0299 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 22 and 23" FT misc_feature 301158..301223 FT /note="Predicted helix-turn-helix motif with score 980.000, FT SD 2.52 at aa 56-77, sequence AARKEAADALKESESAISRINL" FT misc_feature 302298..302546 FT /note="HMMPfam hit to PF01551, DE Peptidase family M23/M37, FT score 9.2e-25" FT CDS 302579..304030 FT /transl_table=11 FT /gene="ctpA" FT /locus_tag="BB0300" FT /product="putative carboxy-terminal processing protease FT precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0609" FT /protein_id="CAE30798.1" FT /translation="MCMSTRKFRGFGLVAIGAVAGILLSVGVSAVAQRGSPLPLDELRQ FT LSNVFAAIKNNYVEAVDDKTLIGNAISGMVSNLDPHSAYLDADAFREMQTATQGEFGGL FT GIEVGAEDGFVKVISPIEDTPAARAGIQAGDLIIKIDDTPTKGMSLNDAVKLMRGAPKS FT PITLTIMRADRPQPIVVKIVRDIIKVRSVRSKMLDNNVAYLRIAQFQEKTGPDLARHLK FT ELGAKGAPKSLVLDLRNDPGGLLTSAIGVAGAFLPPDALVVSTDGRTPDSRHKYRATPS FT EYARGEGNYLNDLPGWVKTVPMVVLVNVGSASASEIVAGALQDHKRAKVLGNRTFGKGS FT VQVILPLSESTAVKLTTSRYFTPSGRSIQATGIEPDYVVADTADGDLFRLPREADLQRH FT LSNQQSPDAEVKSNNDDNTEVAGKAFEFGGKDDFQLQQALNLLAGKPVQKGSARAQAKA FT DIKPSEGKTQRMTITPTGVEPAKSK" FT misc_feature 302579..302668 FT /note="Signal peptide predicted for BB0300 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.474 between residues 30 and 31" FT misc_feature 302852..303094 FT /note="HMMPfam hit to PF00595, DE PDZ domain (Also known as FT DHR or GLGF), score 2e-16" FT CDS 304027..304821 FT /transl_table=11 FT /gene="thiF" FT /locus_tag="BB0301" FT /product="adenylyltransferase" FT /EC_number="2.7.7.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0610" FT /protein_id="CAE30799.1" FT /translation="MNDQQLLRYARHILLDELGIEGQERFLAARVLIIGAGGLGCPAAL FT YLTTAGVGHITLVDDDVVELSNLQRQILHASDSVGRAKAESGRDMLARFNPETQVEARV FT ERLAGAALDTAVAQADVVLDCSDNFATRHAINRACVRHRKPLVSGAAIRFDGQVSVYDL FT RDAQAPCYHCLFPEADDVEELNCATTGVFAPLVGIIGSVQAAEALKLLAGIGQSLAGRL FT LQLDVRSMQWHSVNVPRDPDCAVCGQGGQAAEHARGDAAHCA" FT misc_feature 304105..304515 FT /note="HMMPfam hit to PF00899, DE ThiF family, score FT 9.8e-55" FT CDS 304958..305653 FT /transl_table=11 FT /locus_tag="BB0302" FT /product="putative GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0209" FT /protein_id="CAE30800.1" FT /translation="MLQPTPTLTDQVAGQLARAIADGAYAVGAKLPTGRALAQQYGVSA FT AVIREATERLRAQGLVQSRQGSGCTVVARTPAGGFQVPAGGLDRAHLARVYELRMELEG FT GAAALAARRRGAADLDRMRQALQALQREPIEPEQGVVHDVGFHVAIATATANPYYLQLL FT QYLNLQLRQAVETARANTRRQGDPVHAVHEEHLAIYRAIERGEPEAARAAAQHHLLGAA FT ARLQLDMNL" FT misc_feature 304991..305170 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.5e-15" FT CDS 305670..307082 FT /transl_table=11 FT /locus_tag="BB0303" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0208" FT /protein_id="CAE30801.1" FT /translation="MSASEFPQRLTQALGADVVATSPADIEPWLSDWRGIYRGQAQAVV FT RPRTTDEVARCLALCQQAGVPVVPRGGNTGLCGGATPDAAQANVVLSLERMNAIRALDT FT VANTMVAEAGCILGNLRRAAQDANRLLPLSLAAEDSSQIGGNVATNAGGVNVVRYGMAR FT ELVLGLEAVLPNGEVLHGLRTLRKDNTGYDLKQLLIGSEGTLGVITAVALRLFPRADTR FT TVVLAAVESPRQALQLYELLFEQCGARLQAFEYFSGDCLDLVLTHVDGLHEPFAQRYPA FT YVLVELADTIDEAALNALVEEVIGAALERELCLDAAVSASLAQLQTLWRLREEISEAQR FT ADGPHLKHDVSLPIERIPEFMETAEARVRERYPDIRPFIFGHFGDGNLHYNLSRPAGAP FT REWAAEQGDAVTDLVLDEVLRYGGSISAEHGIGQLKRDHFLHSKDPLELRLMREIKRVL FT DPAGIMNPGKLL" FT misc_feature 305790..306281 FT /note="HMMPfam hit to PF01565, DE FAD binding domain, score FT 9e-60" FT misc_feature 305937..305966 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT misc_feature 306321..307076 FT /note="HMMPfam hit to PF02913, DE FAD linked oxidases, FT C-terminal domain, score 1.8e-59" FT CDS complement(307181..309094) FT /transl_table=11 FT /gene="thiC" FT /locus_tag="BB0304" FT /product="thiamine biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0206" FT /protein_id="CAE30802.1" FT /translation="MNANPKFLAATAEVDAAAVAPLPKSRKVYETGSRPDIRVPFREIE FT QADTPTMFGGEKNPPLTVYDTSGPYTDPQASIDIRRGLPALRRAWIEERGDTEVLDGPT FT SDYGKERLTDPKLTAMRFDLQRPPRRARAGANVTQMHYARRGIVTPEMEFIALRENLRR FT EHYLETLRASGPDGEKLAKRLLRQHPGQSFGAALPSAITPEFVREEVARGRAIIPANIN FT HPEIEPMIIGRNFLVKINANIGNSAVSSGIGEEVEKMTWAIRWGGDTVMDLSTGKHIHE FT TREWIIRNSPVPIGTVPIYQALEKVDGKAEELTWEIFRDTLIEQAEQGVDYFTIHAGVR FT LPFIPMTADRMTGIVSRGGSIMAKWCLAHHKESFLYERFEEICEIMKAYDVSFSLGDGL FT RPGSGYDANDEAQFAELKTLGELTQVAWKHDVQVMIEGPGHVPMQMIKENMELQLKHCD FT EAPFYTLGPLTTDIAPGYDHITSGIGAALIGWYGTAMLCYVTPKEHLGLPNKKDVKDGI FT ITYKIAAHAADLAKGHPGAAIRDNALSKARFEFRWDDQFNLGLDPDTAKEFHDETLPKD FT SMKVAHFCSMCGPHFCSMKITQDVRDYAAAQGVSEKDALQQGMQEKAVEFVKKGAEVYH FT RT" FT misc_feature complement(307292..308683) FT /note="HMMPfam hit to PF01964, DE ThiC family, score 0" FT CDS 309413..309979 FT /transl_table=11 FT /locus_tag="BB0305" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0205" FT /protein_id="CAE30803.1" FT /translation="MQLTIRKLAYTLAFSTLVLAGCTTASKKTDGQAATPADQASSQQA FT SAASVEFYVAQAKAGDGLMEVKVPDGSLYMQRQPVLTRADLTEAAALVDRQGQNFVGLR FT FTEAGARKLNDISSKNIGNMLALVIDRELVAAPRIAEPLNRGVLAFGVPSAKAASEIAA FT KIRGDAGAPATGAPAAPAPKPAPKP" FT misc_feature 309413..309493 FT /note="Signal peptide predicted for BB0305 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.482 between residues 27 and 28" FT misc_feature 309446..309478 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 310070..311059 FT /transl_table=11 FT /locus_tag="BB0306" FT /product="putative restriction endonuclease" FT /note="ortholog of Bordetella pertussis (BX470248) BP0204" FT /protein_id="CAE30804.1" FT /translation="MPVARHGVGERVVQCPPMLTTSDPLPHPLLHDGVVAAVVRLCADA FT TLDFPARCARLEAAIRACTRDQIIEHLQHGGVISECIGHDSSEEKLLAKYSDVLLACAL FT GELGFQARVLAERSDAADVYAECGDQRIVGDGKIFRLSRTALNPKDYKVPSLKKWRQGA FT GYSADYSVLLAPSFQYPLSRSQLYAQAIDNNVLLLSFEQLAFLVRHHQPGRDYRPLWEY FT AGTRAGQDTAAWKEARQYWHGLNQLVARLAGQTEQALRDSYAARRQLLQRQFDDEIAHW FT DAEAQRIRGLSREQAIAELLVSKKIQARVDLMRGAQRQLTLQLDDARA" FT CDS complement(311072..313267) FT /transl_table=11 FT /locus_tag="BB0307" FT /product="putative DNA methylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0740" FT /protein_id="CAE30805.1" FT /translation="MPPPSRKPAAPRRVRRPAAAPVPRLAPVAGPGRLIDEGLSFYEAS FT LAGKAERYGRGETPHTIHVWWARRPHSAMRALVYAALRAPADKRAAARLSELGATPVPQ FT PGLLAEAAAELAGQYGGAPRVLDMFGGGGTIAFEAALLGCDAHSIDVNELAVFLQQANL FT TYGATLDHGLLKQLAHRHGQAVLQRLARRTETLYPLRGRLASQAEKPIVYLWTYRHACP FT QCGYAYTLSRRPWLSKKAGKALAMVATPGPDGDGVDMVSLPDGEPPPSRWAGRGATACP FT RCSATATPGIADSADHCVAVVTSAGVGKQFALRDDALPAAGLLREQEETLLQRTGLALP FT ATTLPAWSGIVNPALYGMRGHADLFNPRQRLVTLMLLEELLAEHRTLQAAHGADVARFV FT SASLSGLIDQMVDWNCRLSMWIPQNEQVGRAFCGPGVAMLWDYAEVDPVGTGPGNLHAK FT LERICAGIDALALLRRPVQVQRASAAALPYPDDSFDAIVTDPPYYDNIFYSVLADFFYA FT WKKPLIDAIENRPTTPPHAPTANSGHDELVASRQRAGGSARAAHDEYCARLGQALREAA FT RVLKPDGLLAFVYSHASVLGWAALVTAFRAAPFTINSVQPLSIERKARPRALASEAVNT FT CTTFVARRAQAPRPVLARAALQAQFDAILRGGLHRSLLRAGWHEHDAGVALIAQGVALL FT ANCAAVEDADTAALIVDLAGQVSALLPGFSIKQRASL" FT misc_feature complement(311762..311782) FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT CDS complement(313340..313747) FT /transl_table=11 FT /locus_tag="BB0308" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0741" FT /protein_id="CAE30806.1" FT /translation="MKHARRLRQLSQENLAHISGLSQSAVASYENGLRQSSRSIRKLAI FT ALQVNLDWLETGVGPMELEAYPSGPAAWRPGLMEPGGERAAAPWPFRAVAHARYQALSA FT RDKLLLEQLVRTFIDACHADYGRAPPWPRER" FT misc_feature complement(313586..313747) FT /note="HMMPfam hit to PF01381, DE Helix-turn-helix, score FT 2.7e-10" FT misc_feature complement(313655..313720) FT /note="Predicted helix-turn-helix motif with score FT 1793.000, SD 5.29 at aa 10-31, sequence FT LSQENLAHISGLSQSAVASYEN" FT CDS complement(313887..314330) FT /transl_table=11 FT /locus_tag="BB0309" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0744" FT /protein_id="CAE30807.1" FT /translation="MKTFSDRLKHARALRSLTQQDLARASGLSQSAVASYENGQRQSSR FT SVRKLAAALQVNLDWLETGKGSMESLADYSASPAGGAYYLMEPGSGEAPPRALPPWPFT FT TIARAQYEALAARDKRLLEQMLRSFVEACHAEYADGRGRARKH" FT misc_feature complement(314148..314309) FT /note="HMMPfam hit to PF01381, DE Helix-turn-helix, score FT 2.2e-13" FT misc_feature complement(314217..314282) FT /note="Predicted helix-turn-helix motif with score FT 2149.000, SD 6.51 at aa 17-38, sequence FT LTQQDLARASGLSQSAVASYEN" FT CDS 314393..315187 FT /transl_table=11 FT /locus_tag="BB0310" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0745" FT /protein_id="CAE30808.1" FT /translation="MSTYSIPDDSCAGRILLAFSSVMIEARVQLEAGWRQAGWIVDWCE FT GQHALARLLAMHPPDAVALCGVAGTLSGLVRTTRTSVPAAVVVALLSEGGLPERIAMMR FT AGVDLCWPIETQVEEVAAMVDAFARRGTASAAAASAWYLSNAGRVLAGPGGVRLPLTVA FT EREFMARLLAAPGHRLARQQLACGFRQRGVQDGAPVSSEVLPSWTANSSHAASYDAAAG FT LSRNVDVMVSRLRAKAQRMGINLPLLSVRRWGYLFIADSDAG" FT CDS complement(315353..316489) FT /transl_table=11 FT /gene="proB" FT /locus_tag="BB0311" FT /product="glutamate 5-kinase" FT /EC_number="2.7.2.11" FT /note="ortholog of Bordetella pertussis (BX470248) BP0746" FT /protein_id="CAE30809.1" FT /translation="MTAQTSAVSVISAANRLVAKVGSSLVTNEGRGLDRAAVGHWAAQI FT AALHQQGKQVVLVSSGAIAEGMARLGWRKRPSAMHELQAAAAVGQMGLCQAYEAAFAEF FT GLRTAQILLTHEDLADRHRYLNARSTLFALLRLGVVPIVNENDTVVTDEIRFGDNDTLG FT ALVTNLIEADALIILTDQRGLYEADPRRDPAARFVAHAQAGDAALEAMAGGAGSGVGTG FT GMLTKILAAKRAAHSGAHTVIASGRERNVLTRLAQGECIGTELRAVLPVWSARKQWLAD FT HLRLRGRVVLDDGAVHALLHEGKSLLPIGVAEVQGEFERGDVVACVDMHGRECARGLIN FT YSSADTRRILRQPSSQIARILGSMTDPELMHRDNLVVT" FT misc_feature complement(315407..315631) FT /note="HMMPfam hit to PF01472, DE PUA domain, score FT 5.6e-11" FT misc_feature complement(315575..315598) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(315755..316447) FT /note="HMMPfam hit to PF00696, DE Amino acid kinase family, FT score 7.2e-62" FT misc_feature complement(315776..315841) FT /note="PS00902 Glutamate 5-kinase signature." FT CDS complement(316560..317693) FT /transl_table=11 FT /locus_tag="BB0312" FT /product="probable GTP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0747" FT /protein_id="CAE30810.1" FT /translation="MKFVDEATIEVIAGKGGNGVASFRREKFIPKGGPDGGDGGRGGSI FT YAVADRNINTLIDFRYARLHRAKNGENGRGSDQYGAAAPDITLRVPVGTVVHDADTGEV FT LFDLDRHDQKVTLAAGGAGGMGNIHFKSSTNRAPRQWTPGKEGEQRRLRMELKVLADVG FT LLGLPNAGKSTLISRISNARPKIADYPFTTLHPNLGVVRTSPSRSFVVADIPGLIEGAS FT EGAGLGHLFLRHLARTRVLLHLVDISSPDPEADPIEQAVVDANAIVEELRRYDPELAAK FT PRWLVLNKLDMVPDAQDAQQRFCAEFGWTGPVFAISGLNGEGTQDLIWALQDYLDAEKR FT KDQDAQDQADGTYVFEDPRFDASRGGAAPATPPGGDE" FT misc_feature complement(316815..317648) FT /note="HMMPfam hit to PF01018, DE GTP1/OBG family, score FT 1.1e-111" FT misc_feature complement(317016..317057) FT /note="PS00905 GTP1/OBG family signature." FT misc_feature complement(317175..317198) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(317843..318103) FT /transl_table=11 FT /gene="rpmA" FT /locus_tag="BB0313" FT /product="50S ribosomal protein L27" FT /note="ortholog of Bordetella pertussis (BX470248) BP0748" FT /protein_id="CAE30811.1" FT /translation="MAQKKGGGSTRNGRDSESKRLGVKVYGGQSILAGSIIVRQRGTRF FT HPGVNVGVGKDHTLFALANGKVHFSVKGALNKPTVSVVAAE" FT misc_feature complement(317855..318100) FT /note="HMMPfam hit to PF01016, DE Ribosomal L27 protein, FT score 3.5e-49" FT misc_feature complement(317960..318004) FT /note="PS00831 Ribosomal protein L27 signature." FT CDS complement(318137..318448) FT /transl_table=11 FT /gene="rplU" FT /locus_tag="BB0314" FT /product="50S ribosomal protein L21" FT /note="ortholog of Bordetella pertussis (BX470248) BP0749" FT /protein_id="CAE30812.1" FT /translation="MYAVIKTGGKQYRVATGEKLKVEQIPADIGQEITLDQVLSVGEGD FT QLKVGTPLVSGAVVKATVLAHGRHDKIKIFKMRRRKHYQKHQGHRQNYTEIRIEAITA" FT misc_feature complement(318161..318448) FT /note="HMMPfam hit to PF00829, DE Ribosomal prokaryotic L21 FT protein, score 4.4e-43" FT misc_feature complement(318167..318235) FT /note="PS01169 Ribosomal protein L21 signature." FT CDS 318873..320021 FT /transl_table=11 FT /locus_tag="BB0315" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0750" FT /protein_id="CAE30813.1" FT /translation="MAVPHDDLPEDLERALLVGRVWRPAPVDGPCVVAVRGGRLYDLTA FT VTPTLADLLDRGDRVALARNAAGECLGPAADWLAGRAAGAMLAPCDLQPVKAAGATFAA FT SLVERIGAEQAGGDAGRAAAVRERIAGLIGTDLSQLRPGSPEAARLKAVLRARGMWSPY FT LEVGLGPDAEVFSKAPPMASVGYGSWIGLLPESEWNNPEPEIVLAVDARGQAVGATLGN FT DVNLRDVEARSALLQNRAKDNNGSCAMGPFVRLFDASYGLGDVRRADVRLRIEGQEDGF FT VLDATSHMREISRDPLELVRQTCGGHHQYPDGFMLFLGTMFSPTQDRAAAGRGFTHRPG FT DLVRIASPRLGALVNRVGLATAIAPWTFGVRALYANLRRRGL" FT CDS 320136..321101 FT /transl_table=11 FT /gene="ispB" FT /gene_synonym="cel" FT /locus_tag="BB0316" FT /product="octaprenyl-diphosphate synthase" FT /EC_number="2.5.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0751" FT /protein_id="CAE30814.1" FT /translation="MNLPELIAPIADDMKAVDAVIRDRLNSDVVLIRTIGDYIIGAGGK FT RMRPAMVLMVARALGYQGTHHQLLAAVVEFIHTATLLHDDVVDESDLRRGRDTANAVFG FT NAASVLVGDYLYSRSFEMMVEADSMRIMQILSQATTVIAEGEVLQLLNVHDPDVSQERY FT LQVVRYKTAKLFEAAAQVGAVLAGASPEQETAAAAYGRHVGAAFQLVDDVLDYSGDAHA FT LGKNVGDDLREGKPTLPLIRVMETGTPEQRELIREAIKTGQADFAAVAQAIQATDALAH FT ARQAAENEAELARQALSAFPVSLYQKSLLEFCAFAVNRDR" FT misc_feature 320226..320978 FT /note="HMMPfam hit to PF00348, DE Polyprenyl synthetase, FT score 1.1e-93" FT misc_feature 320376..320420 FT /note="PS00723 Polyprenyl synthetases signature 1." FT misc_feature 320742..320780 FT /note="PS00444 Polyprenyl synthetases signature 2." FT tRNA 321147..321223 FT /note="tRNA Pro anticodon CGG, Cove score 84.17" FT CDS complement(321369..322241) FT /transl_table=11 FT /locus_tag="BB0317" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0752" FT /protein_id="CAE30815.1" FT /translation="MLTRSMTQAAKDLHTTQPNVSRVIAQLEARIGLRLFERVAGKLVP FT TREGEVFFRDVEMTFAGLRSLESSAATLRRRGTGHLRISAVPSPALVTVPEAMQLFAER FT FPDVTVSMHVADSITVCQWTAAGYSDIGVASDIFSSPGIGHHVASEALGVCIVPAGHRL FT AGMPRALAPADLAGERFLSLSPNDAMRKEIDKVFAAAGDRRILSCESHFAAAICHMVGR FT GLGVSIANPDVADGFRSLDIAIKPFAPDIRFSTYLVYPSSSPLSLLAQTFCECYEISAG FT RRRARRQAG" FT misc_feature complement(321402..322022) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.4e-36" FT misc_feature complement(322092..322241) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 7.7e-12" FT misc_feature complement(322137..322229) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(322167..322232) FT /note="Predicted helix-turn-helix motif with score FT 1682.000, SD 4.92 at aa 4-25, sequence FT RSMTQAAKDLHTTQPNVSRVIA" FT CDS 322411..324459 FT /transl_table=11 FT /gene="hyuA" FT /locus_tag="BB0318" FT /product="putative hydantoin utilization protein A" FT /note="ortholog of Bordetella pertussis (BX470248) BP0753" FT /protein_id="CAE30816.1" FT /translation="MSLRIGVDIGGSFADFAVLDESTRTIQTLKVFSRPDAPGSEVLAG FT IEQLKARHGLDPAQVSYFTHGTTVGVNAVVQRRGLKLALITTRNFEDVLDIGRLKIPDM FT YHLMSKRPAPLISRDRVFGVDERLGADGSVVAPVDEASVLAAAEALREAGCEGVVVSLL FT HAYRNPAHERQVKAILQRALPGMFVSCSHEVWPIIREYERTLTATIGGYVQPRVSHYLE FT SLQGALRESGVPVDLKVTKSNGGVMSAEHGKANCVQMILSGTASGVIGAAYIADLCHIP FT NCMSLDIGGTTADIALIVDGKPQFATGEYIGDFQIHIPSVSVSSVGDGGGSIAWVDELG FT VLKVGPQSAGSTPGPVCYGKGGTQPTITDAFAVMGVIGSQQLGYNAVQVDVEAARRSIE FT PLAEKLGTDVLRTAEAIVNVSVSSMYAGVSRVISRFGIDPRVFSLMPFGGAGPMLACYL FT AKALKVQKLLVPTTPGVLSALGGLIADVKNDFVRTTYCDLNAATVGSLAQAASELEAQA FT RAWLVAEVGTDADAEIDISADMRYRGQSFEIDTPVERAWLEAGAIDSLSQAFHKEHERL FT YGHGDASAGVQVVAMRLVITSRTPKPELNHIAQGAGVPPRESTLRIWLEGQYRDVPLYR FT REKLLAGQAFSGPAIVAQDDCTTCVLPGFDARVDTYGNLELTALALN" FT misc_feature 322420..324063 FT /note="HMMPfam hit to PF01968, DE FT Hydantoinase/oxoprolinase, score 1.5e-148" FT CDS 324477..326474 FT /transl_table=11 FT /gene="hyuB" FT /locus_tag="BB0319" FT /product="hydantoin utilization protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP0754" FT /protein_id="CAE30817.1" FT /translation="MNFDKTVLQIFANYCVAAAESMAHTLMRTAHSAFVKETEDFSCTI FT MTPRGQTFASPKTLGATWYPGLDFSGAIDMIDGYEPGDICMTNDAYSGYVATHTPDIMM FT WKPVYYQGEMVCFVGGHIHNTDMGGAVPASLSRTLTEVHQEGIRFPPTKIVRRGVLNEE FT LMRLMELNVRSPEQNRGDLQAQTAMLMTGERRIVEIIERFGLQAFKEGMAAMLDYSEQQ FT ARAIVRAMPDGEYFFAEYADEDSLNGKPLRVAITLRIRGDELEFDFTGSDPQLTSSLNM FT PTGGKERHVLALVGLNYVLYSLNPEILLNAGMLRVARCILPEGSVVNPLAPAAVGMRSL FT TCKVVQYATMGVFSQVVPDRLPASPAGGMSIVNVKTTDRDGKTIIAAIGPVGGGAGGDP FT YSDGADASGAIVAFLRNTPVEINETEVPIRITRYGMVPDSGGPGRYRGGLGTCMEFQVY FT TPNSAVTARNRDRSRFASWGVLGGKAGTVSRFLRNPGTAHEEDLGVHDFIHCQPGDVIR FT LEGCGGGGYGSPWERDPARVLHDVRCGYVSVENARGQYGVVIEGGEVSRDATARLRAEL FT AGRDPAVAHYDHGAGRDAFEAVWTLARYERMTHHLAGVAPIWRHFLKIKIFDALEQRLG FT GNVADTRPEIVDEIFAQLLKAYPQLQAASA" FT misc_feature 324483..326096 FT /note="HMMPfam hit to PF02538, DE Hydantoinase FT B/oxoprolinase, score 7.4e-56" FT misc_feature 324975..324998 FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT CDS 326509..327846 FT /transl_table=11 FT /locus_tag="BB0320" FT /product="putative amino acid deaminase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0755" FT /protein_id="CAE30818.1" FT /translation="MQQLKQALLRIDTLHTPPAEVDVAIIGAGAAGVATAHELTRLGVR FT VAVIEKGWVAAEQSSRNWGWCRTLGRDIRELELARLSVDLWRSVQADTGVDAGFRETGV FT VFVTDDPSELRTWERWQQAAAARGVPARMLSAREANATHAWGKTPWIGGIRTERDGYAE FT PARAIPLLARHAMDNGAQVIQQCAVNELLVEGGRVAGVQTERGLVRASQVVVAGGVWSS FT LFCRKHKLPLPILQVHSSASRSRQFDTGGAAPARATHFSFRHREDGGLTLAKSGRGTMH FT VVPDLLRYGMKFRSLYRARKANVRLSIGRQFFAQCWDEFRYFHLDRPPYARHRVLDPGP FT DMALVRSAYEDAGAVFPGMGPDLIDQAWGGVIDNTPDGIPVISDVARMPGLYLCTGFSG FT HGFSSSLGAGRCLAQWIARGRSDLSLDAFSYARLVDGRRLQPSILY" FT misc_feature 326569..327771 FT /note="HMMPfam hit to PF01266, DE FAD dependent FT oxidoreductase, score 0.0022" FT misc_feature 326929..326952 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 327843..328913 FT /transl_table=11 FT /locus_tag="BB0321" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0756" FT /protein_id="CAE30819.1" FT /translation="MNGRHVPAVLGSHHFCKGNTNMRYNRRAFLGAMAALPAALGAARL FT ASAAPAGEAGYPDRPIKFLVPFSAGSSTDIAARAYAEVTTKAIKGASVVVENRAGAGGN FT VGAAVIARSAPDGYSLLYSAATPYAIAPFVYPDLSYNPIRDFAPIAVTISVPVFVVVAG FT DSDIHTMADLAAHMKAGQQAVSYGSNGVGTSSHIICKLIAMELGYPDVLHVPYRQGSQG FT VMADVIGKRLTYAVDPWSVVGPLVQSGRLRAIATTNGQRLSVAPDIPTLSEIFKKDFAV FT VTWNGLWAPAGTPQGIVDRLGKAFESARENQELVRQFESQGTPLMPAMSLAQTRTFMTG FT EVERWKRFVQASGIKL" FT misc_feature 327843..327986 FT /note="Signal peptide predicted for BB0321 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.909 between residues 48 and 49" FT misc_feature 328068..328904 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 6.1e-75" FT CDS 328968..330449 FT /transl_table=11 FT /gene="gabD" FT /locus_tag="BB0322" FT /product="succinate-semialdehyde dehydrogenase [NADP+]" FT /EC_number="1.2.1.16" FT /note="ortholog of Bordetella pertussis (BX470248) BP0757" FT /protein_id="CAE30820.1" FT /translation="MSLSVGNAALLPGRNLIGSEWREAALGARFAVADPATGKVIAHVP FT DSGARDAGAAVTAAHQAFADWRRTPAKVRAQIIKRWNALLHENAEDLARLISSEQGKPL FT AEARGEVSYAASYVEWFAEEATRADGDLIPSPAQGRRMFALREPVGVVAAITPWNFPAA FT MIARKIAPALAAGCTVVCKPAEDTPLTSLALTALAQQAGVPPGVLNIVTASRGRAAEVA FT DAWLDDPRVRKITFTGSTPVGKHLARRSADTLKRVSLELGGNAPFIVFDDADLDAAVEG FT LMVSKFRNGGQTCVCPNRIFVQAGVHDAFVRKLAARVEGLVVGPASDPASQIGPMINAR FT AVEKIEHHVADALERGARLAVGGKRIHSARCAGDHYYAPTVLTGVDETMACFREETFGP FT VAPITVFASEADVVAAANATAFGLAAYFYSTDVRRIWRLADALETGIVGVNEGALAAEA FT APFGGVKDSGYGREGSRHGLAEYMQIKYVCQGQLD" FT misc_feature 329025..330440 FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 6.3e-196" FT misc_feature 329541..329606 FT /note="Predicted helix-turn-helix motif with score 975.000, FT SD 2.51 at aa 192-213, sequence LALTALAQQAGVPPGVLNIVTA" FT misc_feature 329742..329765 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT misc_feature 329826..329861 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS complement(330465..331052) FT /transl_table=11 FT /gene="cyaC" FT /gene_synonym="HlyC" FT /locus_tag="BB0323" FT /product="cyclolysin-activating lysine-acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0758" FT /protein_id="CAE30821.1" FT /translation="MPPAPPCTDVMLPSAQAPSLLNPTDDFAALGNIAWLWMNSPMHRD FT WPVHLLARNTLAPIQLGQYILLRCNDVPVAYCSWALMDADTELSYVMAPSSLGGNAWNC FT GDRLWIIDWIAPFSRDDNRALRRALAERHPDSVGRSLRVRRGGDTARVKEYRGRALDAA FT AARAQLDRYHAELIAGLRASNGGYAPRGRGTA" FT misc_feature complement(330510..330989) FT /note="HMMPfam hit to PF02794, DE RTX toxin acyltransferase FT family, score 1.8e-116" FT CDS 331400..336622 FT /transl_table=11 FT /gene="cyaA" FT /gene_synonym="cya" FT /locus_tag="BB0324" FT /product="bifunctional hemolysin-adenylate cyclase FT precursor" FT /EC_number="4.6.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0760" FT /protein_id="CAE30822.1" FT /translation="MLDVWFLQKDEVLSATHRLRRCESVQSTTYRQIHMQQSHQAGYAN FT AADRESGIPAAVLDGIKAVAKEKNATLMFRLVNPHSTSLIAEGVATKGLGVHAKSSDWG FT LQAGYIPVNPNLSKLFGRAPEVIARADNDVNSSLAHGHTAVDLTLSKERLDYLRQAGLV FT TGMADGVVASNHAGYEQFEFRVKETSDGRYAVQYRRKGGDDFEAVKVIGNAAGIPLTAD FT IDMFAIMPHLSNFRDSARSSVTSGDSVTDYLARTRRAASEATGGLDRERIDLLWKIARA FT GARSAVGTEARRQFRYDGDMNIGVITDFELEVRNALNRRAHAVGAQDVVQHGTEQNNPF FT PEADEKIFVVSATGESQMLTRGQLKEYIGQQRGEGYVFYENRAYGVAGKSLFDDGLGAA FT PGVPGGRSKSSPDVLETVPASPGLRRPSLGAVERQDSGYDSLDGVGSRSFSLGEVSDMA FT AVEAAELEMTRQVLHAGARQDDAEPGVSGASAHWGQRALQGAQAVAAAQRLVHAIALMT FT QFGRAGSTNTPQEAASLSAAVFGLGEASSAVAETVSGFFRGSSRWAGGFGVAGGAMALG FT GGIAAAVGAGMSLTDDAPAGQKAAAGAEIALQLTGGTVELASSIALALAAARGVTSGLQ FT VAGASAGAAAGALAAALSPMEIYGLVQQSHYADQLDKLAQESSAYGYEGDALLAQLYRD FT KTAAEGAVAGVSAVLSTVGAAVSIAAAASVVGAPVAVVTSLLTGALNGILRGVQQPIIE FT KLANDYARKIDELGGPQAYFEKNLQARHEQLANSDGLRKMLADLQAGWNASSVIGVQTT FT EISKSALELAAITGNADNLKSADVFVDRFIQGERVAGQPVVLDVAAGGIDIASRKGERP FT ALTFITPLAAPGEEQRRRTKTGKSEFTTFVEIVGKQDRWRIRDGAADTTIDLAKVVSQL FT VDANGVLKHSIKLEVIGGDGDDVVLANASRIHYDGGAGTNTVSYAALGRQDSITVSADG FT ERFNVRKQLNNANVYREGVATQKTAYGKRTENVQYRHVELARVGQLVEVDTLEHVQHII FT GGAGNDSITGNAHDNFLAGGAGDDRLDGGAGNDTLVGGEGHNTVVGGAGDDVFLQDLGV FT WSNQLDGGAGVDTVKYNVHQPSEERLERMGDTGIHADLQKGTVEKWPALNLFSVDHVKN FT IENLHGSSLNDSIAGDDRDNELWGDDGNDTIHGRGGDDILRGGLGLDTLYGEDGNDIFL FT QDDETVSDDIDGGAGLDTVDYSAMIHAGKIVAPHEYGFGIEADLSEGWVRKAARRGMDY FT YDSVRSVENVIGTSMKDVLIGDAQANTLMGQGGDDTVRGGDGDDLLFGGDGNDMLYGDA FT GNDTLYGGLGDDTLEGGAGNDWFGQTPAREHDVLRGGAGVDTVDYSQAGAHAGVATGRI FT GLGILADLGAGRVDKLGEAGSSAYDTVSGIENVVGTELADRITGDAQANVLRGAGGADV FT LAGGEGDDVLLGGDGDDQLSGDAGRDRLYGEAGDDWFFQDAANAGNLLDGGDGNDTVDF FT SGPGRGLDAGAKGVFLSLGKGFASLMDEPETSNVLRHIENAVGSVRDDVLIGDAGANVL FT NGLAGNDVLSGGAGDDVLLGDEGSDLLSGDAGNDDLFGGQGDDTYLFGAGYGHDTIYES FT GGGHDTIRINAGADQLWFARQGNDLEIRILGTDDALTVHDWYRDADHRVEAIHAANQAI FT DPAGIEKLVEAMAQYPDPGAAAAAPPAARVPDTLMQSLAVNWR" FT misc_feature 331574..331753 FT /note="HMMPfam hit to PF03497, DE Anthrax toxin LF subunit, FT score 1e-37" FT misc_feature 332546..332569 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 332591..334363 FT /note="HMMPfam hit to PF02382, DE RTX N-terminal domain, FT score 3.7e-11" FT misc_feature 334541..334594 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.014" FT misc_feature 334595..334648 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.00066" FT misc_feature 334649..334702 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.0099" FT misc_feature 334964..335017 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.0061" FT misc_feature 334982..335038 FT /note="PS00330 Hemolysin-type calcium-binding region FT signature." FT misc_feature 335018..335071 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.0042" FT misc_feature 335336..335389 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.24" FT misc_feature 335390..335443 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.00015" FT misc_feature 335408..335464 FT /note="PS00330 Hemolysin-type calcium-binding region FT signature." FT misc_feature 335444..335497 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.00024" FT misc_feature 335504..335557 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 56" FT misc_feature 335732..335785 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 4.4" FT misc_feature 335777..335833 FT /note="PS00330 Hemolysin-type calcium-binding region FT signature." FT misc_feature 335786..335839 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.013" FT misc_feature 335840..335893 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.00069" FT misc_feature 335903..335953 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 18" FT misc_feature 336110..336163 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.096" FT misc_feature 336164..336217 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.014" FT misc_feature 336209..336265 FT /note="PS00330 Hemolysin-type calcium-binding region FT signature." FT misc_feature 336218..336271 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.034" FT misc_feature 336308..336361 FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.73" FT CDS 336629..338836 FT /transl_table=11 FT /gene="cyaB" FT /locus_tag="BB0325" FT /product="cyclolysin secretion ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0761" FT /protein_id="CAE30823.1" FT /translation="MDHGPPASRGGAVSLRFFPEVFPMTSPVAQCASVPDSGLLCLVML FT ARYHGLAADPEQLRHEFAEQAFCGETIQLAARRVGLKVRRHRPAPARLPRAPLPAIALD FT RQGGYFVLARFESGTDQAVLIQRPGQAPARLGQAEFEALWAGELLLCACAASPTQALAR FT FDFSWFIPALVKHRHLIGEVLLISLVLQFIALLTPLFFQVVMDKVLVNNAMETLNVIAV FT GFLAAILFEALLTGIRTYLFAHTSSKLDVELGARLYAHLLRLPLAYFQARRVGDSVARV FT RELENIRAFLTGNAVTVLLDVVFSVVFIAVMFFYSVKLTLVVLAALPCYFLLSLVLTPV FT LRRRLDVKFNRGAENQAFLVETVSGIDTVKSLAVEPQWQRHWDRQLAGYVVAGLSVANV FT AMLANTGVTLISRLVALGVLWVGATEVVAQRMTVGELVAFNMLSGHVTQPVIRLAQLWN FT DFQQTGVSMQRLGDILNCRTEVAGDKAQLPALRGSIELDRVSFRYRPDAADALRNVSLR FT IAPGEVVGVVGRSGSGKSTLTRLIQRMFVADRGRVLIDGHDIGIVDSASLRRQLGVVLQ FT ESTLFNRSVRDNIALTRPGASMHEVVAAARLAGAHEFICQLPEGYDTMLGENGVGLSGG FT QRQRIGIARALIHRPRVLILDEATSALDYESEHIIQRNMRDICDGRTVIIIAHRLSAVR FT CADRIVVMEGGEVAECGSHETLLAAGGLYARLQALQAGEAG" FT misc_feature 336710..337096 FT /note="HMMPfam hit to PF03412, DE Peptidase C39 family, FT score 4.9e-27" FT misc_feature 337157..337978 FT /note="HMMPfam hit to PF00664, DE ABC transporter FT transmembrane region, score 1.1e-58" FT misc_feature join(337175..337243,337286..337354,337502..337570, FT 337583..337651,337790..337858) FT /note="5 probable transmembrane helices predicted for FT BB0325 by TMHMM2.0 at aa 183-205, 220-242, 292-314, 319-341 FT and 388-410" FT misc_feature 338189..338743 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.7e-64" FT misc_feature 338210..338233 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 338522..338566 FT /note="PS00211 ABC transporters family signature." FT CDS 338833..340155 FT /transl_table=11 FT /gene="cyaD" FT /locus_tag="BB0326" FT /product="cyclolysin secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0762" FT /protein_id="CAE30824.1" FT /translation="MRRALRELAVRHGRVLAASWRQRHRRPAGWFDPVETEFLPSALSL FT QERPISPTARWLARILMALAAGALVWSVVGKTEIVVHAAGKVVPVGQSKIIAASDTGRV FT ARVLVADNSRVAAGDVLLRLDAGVTDAEERKWRVQAAQARQDEARSRAMIRALDTGRAP FT VLAELPADPGMMAAQSYLDSQYADYQAQLRSIEAAIAAYRRELGLVTQIAHAHRGLRRD FT GDVSQQAYLEKEQARTTLEGRLRQSEAQRAALQTQTRRQAFETLVLARKLAAQAEQEIA FT RTSAQRSRLVLTAPVDGVVQQLVALTEGTAVAATQPLMMVVPSGAGIQVQAQLDSKDIG FT FVRAGAPASVKVGAYDYTKYGTLEGTVLHVSPDTVVDDRQQHSYRVTIALAQATLEVDG FT QPQRLKEGMAVQADIRTGSRRLIEYLLSPVARHAGESLGER" FT misc_feature 339106..340062 FT /note="HMMPfam hit to PF00529, DE HlyD family secretion FT protein, score 8.8e-39" FT misc_feature 340042..340110 FT /note="PS00543 HlyD family secretion proteins signature." FT CDS 340157..341581 FT /transl_table=11 FT /gene="cyaE" FT /locus_tag="BB0327" FT /product="cyclolysin secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0763" FT /protein_id="CAE30825.1" FT /translation="MAAVQVRWRGRGLILALWAGFALSVGGGARARDGLATPPAFEGQA FT APAVSWPCPPPADRLDDLALLEAVDLALCHSPALRQGWARIKARSAEVGLARAPYYPSV FT ALSAGRSAQRRSTGLGEDGVRNNVMAATLAWRLFDSGARSAALRAARAQLDEAAQAYGA FT VLQDKLAEVAGAYYEAATARQALRTAVEDTEIARRSASVAARRARAGLDSHGDVLHAQA FT ALERARLAQAQAEGAQARALAGLAQVLGVDPATPIVLAPGPLAPQRIEDRELAQWLRDA FT RQRHPAIKAAQAGLAAATAQVDVARATDMPTVDLSLGHYRNSSENVSVFAGSSRSVSAS FT LNLRIPLFDGFARRHRIQGARAEVQRQEALLDQARLATGAAVARAYADLRAARASHEAS FT LRWLKAARAAYESDLRRYEAGVGGVAELLRAQSDWLLARQRHVLYAAQLRTRALALLAA FT AGELGRSTINGDPPKE" FT misc_feature 340157..340249 FT /note="Signal peptide predicted for BB0327 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.875) with cleavage site FT probability 0.716 between residues 31 and 32" FT misc_feature 340190..340249 FT /note="1 probable transmembrane helix predicted for BB0327 FT by TMHMM2.0 at aa 12-31" FT misc_feature 340349..340939 FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 2.8e-46" FT misc_feature 340976..341569 FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 4.1e-50" FT CDS 341672..342580 FT /transl_table=11 FT /gene="cyaX" FT /locus_tag="BB0328" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0764" FT /protein_id="CAE30826.1" FT /translation="MMVMDLRWFQDFLTLAECGQFTTAAELRHVSQSAFSRRIQSLETW FT VGTPLIDRGCFPTRLTAAGEQFRSAAAEIVRKVIDARGEAGATGRDSMVLRVAMPHCLA FT TSRFPAWCARWQQVGGAESLRLHVGNVHDSVEWLAAGVVDLLVCFRHAVEDIQLDAQSY FT MRAGVEADVLRLYRPTGMALDEAELACEAPQARYPYVSYAQGAYFRRLIELSCGPLLQR FT AVLQRVCETDFVDGARDLVRAGVGLAWLPDSSARAAVEHGEIVAVADRRCAIPMEICMY FT ARRHGPAQEAVERVFDQFGRG" FT misc_feature 341687..341866 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.2e-16" FT misc_feature 341726..341791 FT /note="Predicted helix-turn-helix motif with score FT 1182.000, SD 3.21 at aa 19-40, sequence FT GQFTTAAELRHVSQSAFSRRIQ" FT misc_feature 341729..341821 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 341933..342574 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 5.4e-17" FT CDS 342645..343559 FT /transl_table=11 FT /locus_tag="BB0329" FT /product="probable extracellular solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0765" FT /protein_id="CAE30827.1" FT /translation="MKRLLNALTAALAIGAAAAGQAHAADLDGTLKKISDTGVITIGHR FT ETSIPFSYYDANQKPVGYSIDICTRIVDAVKTRIKRDDIQVKYLPVTSATRIPLMGNGT FT IDLECASTSNTLDRQKQVAFSVTTFVTGNRFISLKSANLKTIDDLKGKTVASTSGTANI FT RQANEINEARSLGMKVVPVKEHAEGFLMVETGRAAAFIMDDILLYGLAANAKEPDRYQV FT SGDSLSIEPYAIMLRRDDPQFKALVDDTIKSLYASGDFEALYKRWYQSPLPPKGINLNV FT AMSEVLKRVVATPTDSGDPAAYK" FT misc_feature 342645..342716 FT /note="Signal peptide predicted for BB0329 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT misc_feature 342693..342725 FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT misc_feature 342762..343457 FT /note="HMMPfam hit to PF00497, DE Bacterial extracellular FT solute-binding proteins, family 3, score 1.4e-54" FT CDS 343643..344401 FT /transl_table=11 FT /gene="gltJ" FT /locus_tag="BB0330" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0766" FT /protein_id="CAE30828.1" FT /translation="MGYQWNWGVLFALSPDGGQTYLQTLLDGLAVTVQTAALAWALALG FT LGIAVGVARTLPYPLVKRLAAVYVEVFRNIPLIVQMFLWYFVLPELLPKALGDWIKQLP FT EGSFYTAALSIGVYMSARIGEQLRAGIEALPPGQRQAGLALGLTLPQLYRHVLLPNALR FT MVLPTMTSDCLNTIKNTSVALTIGLADLTAQAHAMQEYSFQVFEAFLTATVAYLALNLI FT VIVAMRALERWVSIPGQSPRRAQAAKGGRA" FT misc_feature join(343733..343801,343838..343906,344249..344317) FT /note="3 probable transmembrane helices predicted for FT BB0330 by TMHMM2.0 at aa 31-53, 66-88 and 203-225" FT misc_feature 344030..344251 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 1.5e-12" FT misc_feature 344033..344119 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature 344048..344113 FT /note="Predicted helix-turn-helix motif with score FT 1075.000, SD 2.85 at aa 136-157, sequence FT PGQRQAGLALGLTLPQLYRHVL" FT CDS 344398..345081 FT /transl_table=11 FT /gene="gltK" FT /locus_tag="BB0331" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0767" FT /protein_id="CAE30829.1" FT /translation="MSSFDYQAIIDALPYLFLTGLRFSLLLTLSSAAGGVVLGALLAIA FT RLYGRRWVAWPAAIYVNLFRSLPLVLVIFLIYFILPYLLQWITQAERPIVLGATGSAFV FT TFILFEAAYFSEIIRAGIGSVGPGQYAAGSALGLTHGQVLRKVILPQAVRNMLPVLLTQ FT VIVIFQETALVYVLSLPDFLGAATKIAQRDNRLVEMYVLVAVVFFVLSFTASRGVRALR FT ARLGA" FT misc_feature join(344464..344532,344593..344661,344674..344742, FT 344866..344934,344992..345051) FT /note="5 probable transmembrane helices predicted for FT BB0331 by TMHMM2.0 at aa 23-45, 66-88, 93-115, 157-179 and FT 199-218" FT misc_feature 344758..344991 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 2.5e-14" FT CDS 345098..345841 FT /transl_table=11 FT /gene="gltL" FT /locus_tag="BB0332" FT /product="glutamate/aspartate transport ATP-binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0768" FT /protein_id="CAE30830.1" FT /translation="MEWLSMIEIERLGKCYGDLPVLKDCSLAVARGEVVVVCGPSGSGK FT STLIKCVNRLEPFESGRIVVDGTDVGAPGTDLPALRARVGMVFQHFELFPHLSVLENVC FT LGQMSVLGRSRAQARAKADALLERVGVAAHRDKHPGQLSGGQQQRVAIARALAMDPVVM FT LFDEPTSALDPEMIGEVLDVMTGLARDGMTMMVVTHEMGFARRVADRIVFMEAGEIIDD FT VASAEFFGSAASPRSREFLSRIISH" FT misc_feature 345191..345748 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 6e-68" FT misc_feature 345212..345235 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 345521..345565 FT /note="PS00211 ABC transporters family signature." FT CDS 345871..346731 FT /transl_table=11 FT /locus_tag="BB0333" FT /product="probable aminotransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0769" FT /protein_id="CAE30831.1" FT /translation="MSSLFYINGSFVPAEQARVPAMDRGFLFGDGVYEVMAVIDGMLLE FT FERHAARLARSLGEIGIANPLPRERLLAVCRELVSRAGLREGSVYVQVTRGADARRDFA FT FPSGAEPTVMLFTSEKDLRVNPLAQSGVQVATVPDLRWQRRDIKSVSLLAQVLAKQAAQ FT ARGAFEAVMVDAQGVVTEGSSSSVLLVNAAGEIVVRPLSQDILPGCTRAAVLELARERD FT MAMVERPFTLDECRQAREVILTSALHFVLPVIAVDGEPVADGRPGPVCAALRELYLRHT FT LATAL" FT misc_feature 345892..346704 FT /note="HMMPfam hit to PF01063, DE Aminotransferase class FT IV, score 2.2e-50" FT CDS complement(346739..347305) FT /transl_table=11 FT /locus_tag="BB0334" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0770" FT /protein_id="CAE30832.1" FT /translation="MSLIVAARFDTFPDVENAAQRLFSEGFTKQDVHVFYVNSAGEHSR FT YAYGGDRRSDPDSGRADMGAILGAALFGLAFAIAGGFIVAGLNESTIAMLAAAGVGAYI FT GSLFGALWVTGHLARKRGEAAPVDHPEVRPAGLLLALHTDPTRETLACQVLRAANGHDV FT EHAEGVWRDNRWQDFDPLKPPQREP" FT misc_feature complement(join(346967..347035,347045..347113)) FT /note="2 probable transmembrane helices predicted for FT BB0334 by TMHMM2.0 at aa 65-87 and 91-113" FT CDS complement(347394..348350) FT /transl_table=11 FT /locus_tag="BB0335" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0771" FT /protein_id="CAE30833.1" FT /translation="MKSISKYLAATLASLGLAAGAAATDFPKNEVRLVVNYGAGGNTDV FT ASRALAKGMEKPLGKPVIVENKPGALGTIGPGYVARQAPDGYTVGVVTYSTQAIMPHLM FT KLPYTMDDFDFVAGVGRYRYGITVRADSPYKTLQDLVEAAKKTNGVFFGAPSSPNNLAL FT LELGRLTGGKFEQVSYKSGSETVTALLGGQVDVIVQNPSDVLPHIRDGKLRMIASASPM FT RWPELPEVPTIKESGWPVQIDSWIGLATPRGTPADVLAKLQQAALAAVADPVTRDSFEK FT LGVDPASLKGSEYAELLKQGHEEMGRMIRDANLPRIN" FT misc_feature complement(347409..348215) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 5.9e-66" FT misc_feature complement(348282..348350) FT /note="Signal peptide predicted for BB0335 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.867 between residues 23 and 24" FT CDS complement(348395..349147) FT /transl_table=11 FT /locus_tag="BB0336" FT /product="putative acetoacetyl-CoA reductase" FT /EC_number="1.1.1.36" FT /note="ortholog of Bordetella pertussis (BX470248) BP0772" FT /protein_id="CAE30834.1" FT /translation="MSAPRIAVVTGAGRGIGLASARALLAAGNHVVTIDRGAIDTQALF FT GAQHDRVTAASADVQDMPALQALKTRIEAELGPVSILVNNAGVSPKRPDGRSSGILEVS FT EEEWAQVLGINLTCVMRLCQLFLPAMRDQGYGRIVNVASLAGRARSIVAGPSYMASKAG FT VIGLTRAIASEMGPYGITANCVAPGRILTEMAQQAGPEVNQRYAEQIPVRRLGTPEEVG FT ASIAFLCSPDAGFVNGAIIDINGGFYMP" FT misc_feature complement(348407..349141) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 2.1e-69" FT misc_feature complement(348776..348841) FT /note="Predicted helix-turn-helix motif with score 996.000, FT SD 2.58 at aa 103-124, sequence VSEEEWAQVLGINLTCVMRLCQ" FT misc_feature complement(349070..349147) FT /note="Signal peptide predicted for BB0336 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.671) with cleavage site FT probability 0.520 between residues 26 and 27" FT CDS complement(349144..350889) FT /transl_table=11 FT /locus_tag="BB0337" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0773" FT /protein_id="CAE30835.1" FT /translation="MSTLPKPLSAPGFTLDGTVAHAIVRALARHGVDTLFGQSLPSLLH FT LAAEQAGMRQVAYRTENAGGYMADAYARVSGKPAIVTAQNGPAATLLVAPLAEAMKVSV FT PVIALVQDVNRDQTDRNAFQELDHIALFQPVTKWVRRVTEASRIEDYVDQAFAAACSGR FT PGPVALLLPADLLAAAAPAPALPRNNSLGHFPLDRSVAAPQAIARAASLLAQAQRPVVV FT AGGGVHISDASAAMAALQETAHLPVATTVMGKGAVDERHPLSIGVVGSNMGPNGPTRFQ FT RRLIAEADVVLLVGNRTNQNGTDSWQLYPKNAQYIHIDVDGLEVGRNYEALRLVGDARL FT TLEALTAALAGQDLAARRQARAGVEQAIALGHEKHLEDSAAVRLSDASPIRPERIMHEL FT QQQLDEQSIVVADASYSSIWITHFLTALRPGMRFLTPRGLAGLGWGFPMAMGAKLANPA FT AEVYALVGDGGFGHVWSELETAARMGVKVTLIVINNGILGFQKHAENVKFGAHTSAVAF FT APVDHTAIARACGCTGIRVEDPAQLADALAQARAASGSALIEVICDENAFPPITFFTPD FT AGVQA" FT misc_feature complement(349210..349734) FT /note="HMMPfam hit to PF02775, DE Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 1.1e-37" FT misc_feature complement(349483..349542) FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT misc_feature complement(349786..350286) FT /note="HMMPfam hit to PF00205, DE Thiamine pyrophosphate FT enzyme, central domain, score 1e-31" FT misc_feature complement(350338..350838) FT /note="HMMPfam hit to PF02776, DE Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 1.6e-30" FT CDS 350974..351708 FT /transl_table=11 FT /locus_tag="BB0338" FT /product="probable GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0774" FT /protein_id="CAE30836.1" FT /translation="MATSANRPLFAPIPPSMNMPLAPMARENIAAVIYRQLKQLLMMGE FT LKPGEILTLRMLTERLGVSQTPVREALLQLVSERALAMSRGKSVSVPAPTREKLQELRD FT IRLTLEVLATERATPRISDAEIKTLERLHREMVRYKNSEQREGVLKTNYEFHFTLYNAS FT GMPDLVAIIEGLWAQTGPSLTYLYQKPFAHLYDAHPHLPLIEALRRHDVEAAVAAIRRD FT VAGYGAALMERLPAEAGQPAGG" FT misc_feature 351070..351246 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.2e-06" FT misc_feature 351127..351192 FT /note="Predicted helix-turn-helix motif with score FT 1003.000, SD 2.60 at aa 52-73, sequence FT LTLRMLTERLGVSQTPVREALL" FT CDS complement(351716..351895) FT /transl_table=11 FT /locus_tag="BB0339" FT /product="hypothetical protein" FT /protein_id="CAE30837.1" FT /translation="MMTLPWREQQAAGAAWGLLDGEIDHRDVVLTRAEREANGKMVSCC FT SRAAGKGRRIVLEL" FT CDS 352042..353064 FT /transl_table=11 FT /locus_tag="BB0340" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0775" FT /protein_id="CAE30838.1" FT /translation="MSLHPVVCLDRSRRGPGDFPLLSMTAVAMRRGVSALLGVAGTLAL FT AAPAWAQARQDAASAAHPTWMAAAGNWQVLEGGPGVARVKQRTTGVYAGSEHALGAGLR FT LGGVLGLTRSTARVDDLHAKGHVNSYSLALYGARTVAAGAGDFNAVAGAAYTWHDMDTR FT RHFHWAGTSQTLTADTHGSTFQAFGELGYRWRASARVQIEPFAALAWRDVRTRAFVESG FT GWAAISAGPSRLTQTTTTLGVRGEAGYMLGPAPGKLRLTLGWRRAFGDVDPQATLVLDG FT GNALAATGAPIARDAVLAGLGAELALSRSAAIGLAYIGQYGGGNREHTGSLSLRWLFGA FT " FT misc_feature 352192..353055 FT /note="HMMPfam hit to PF03797, DE Autotransporter FT beta-domain, score 5.2e-29" FT CDS complement(353076..353798) FT /transl_table=11 FT /locus_tag="BB0341" FT /product="probable GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0776" FT /protein_id="CAE30839.1" FT /translation="MTTTMYKTTTEPAEKGRRAFSQVLEKLREMVISYEIKPGERLNEV FT ALAERLGVSRTPVREALHFLARDGFLAEAGRGYVRRPLNLKEMIDLYETREVLEVACLQ FT LAAGRATPQRLDALEAFLAESRAKSPDLPVTELVSLDETFHHMLAEMSGNHELQRILHN FT VNERIRFIRWINMERIGRDKTQAEHAAILAALRAGDIGTAQQNLRSHISKRTEQIKECI FT AQGLARIYLDDDETSPGA" FT misc_feature complement(353562..353732) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 4.6e-09" FT misc_feature complement(353604..353678) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT misc_feature complement(353610..353675) FT /note="Predicted helix-turn-helix motif with score FT 1086.000, SD 2.89 at aa 42-63, sequence FT LNEVALAERLGVSRTPVREALH" FT CDS complement(353943..354950) FT /transl_table=11 FT /locus_tag="BB0342" FT /product="probable Zinc-binding dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0777" FT /protein_id="CAE30840.1" FT /translation="MKAVVIHGHGGPEVLQYDTAFPDPKAGEGDVILRVKATSINYHDV FT FTRRGMPGIKLDFPVIMGLDVAGEIVEVGPGVQGWKAGDRVLVDPINRAEGGLMGETVH FT GGLAELCKAREHQLIRIPDGVSYEQAAALPVAFGTAYRMMNTIGQVQAGEKVLVLGASG FT GVGVGCVMLAKIAGAQVIACASSEAKMQRLRELGADHVINYADTDFAKAIYELYGKPHR FT RKFDGGVDVAVNFTGGDTWVKSMRCLRRGGRLLTCGATAGYDPQTDLRFIWTFELNIRG FT SNGWMREDLDALLGLVQSGKMQVPIDRVLSLQDAGEALRLIEDREVMGKVVVTP" FT misc_feature complement(353949..354926) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00107, DE Zinc-binding FT dehydrogenase, score 8.7e-85" FT CDS complement(354991..356541) FT /transl_table=11 FT /locus_tag="BB0343" FT /product="putative acetyl-CoA synthetase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0778" FT /protein_id="CAE30841.1" FT /translation="MRAAPANLGALFSPARDPAAIALIDLGGESGPREYTYAELDAQAD FT GVARGLRARGLPAGARAAILSANRMEFLAAYLGIMRAGLIAVPVNYRLPPDSIDFILRD FT SGAALVFCDGPRRDAYTVALPSVEFGASGAGGYARFLDPGPCEAARPADDQPALFLYTS FT GSTGRPKGVKISHAGYLWTVRQRTASTDYGGHCFLVAAPLYHMNALNTIKLALAGQGRL FT VLMPQFSPAGYLDAIERYRCTWLTAIPTMIALLARETGALAGADLASVAMVRLGSEPLT FT QRIADSARAMFPRAAFGNGYGATETGALVFGPHPQGLAQPVLSVGYPHPAVQLRLADGA FT DLDAATGVLQVRSPALMLGYHGLPEQTAAAMTHDGFYITGDVMRRDEHGFHYFIGRADD FT MFVCGGENIYPGEVEKMLERHPAIVQACIVPLADPLKGMKPVALVVSRPDATLSEQEVK FT DYALAHGPAYQHPRAVRFVDEMPISSTGKVNRKAAALLAAELIAAVPPLTQGGHALRR" FT misc_feature complement(355258..356436) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 5.7e-108" FT misc_feature complement(356032..356067) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(356538..357656) FT /transl_table=11 FT /locus_tag="BB0344" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0779" FT /protein_id="CAE30842.1" FT /translation="MRSKENAMEFHQCYALDYHRARDKFRAAAAAAGASLTQYLHEGQT FT GPDGRPLHTDVARFGRADAPRRLLAISGTHGLEGFFGSAAQIGWMLGDGPASLDPDVAV FT IMVHAINPWGFAHLSRTTENNVDLNRNFIDHGQPHPANPDYAILHPQLLREDWSSAAVA FT AAQQAMEDFTARHGEDRLYDTLARGQYSHPDGLNYGGTAREWSNLTLERIVRDHLAGAR FT KVALIDWHTGIGGYGEPFFLCFNEEGGPLHELAARWWGRDRIVGQRPHGKARPNYQGLL FT FHGVQALLGDVPMCGAVIEFGTRGWHMRRLLRLDLWLKFKADPASERYAMLRADLLDSF FT CPYDQVWREGTLRHAQEITRQAVAGLAAWNET" FT CDS complement(357653..358435) FT /transl_table=11 FT /locus_tag="BB0345" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0780" FT /protein_id="CAE30843.1" FT /translation="MSKSVKSFLYPLITGVVLVILWFASIRIFSVPNYLLPTPEAVLNA FT LRIGYVEGQYWPHFLFTLQSTVYGYLIGCGMALVVGTVLAESETFEQFIYPYIIALQST FT PKVAIAPLLLVWFGFGMASKVVMVALMSFFPMFINTVVGIRQANPAMLDLMKAFKASRS FT HVFFHVKLPAASGHIFAGLQISVVLSLIGAVVSEFISSSQGLGYLIQSASVNMDVATMF FT ACLFSLVVIGLTGTNLIRFLHRKLVFWEQSTTATVQPE" FT misc_feature complement(join(357713..357781,357839..357907, FT 358004..358063,358091..358159,358193..358261, FT 358349..358417)) FT /note="6 probable transmembrane helices predicted for FT BB0345 by TMHMM2.0 at aa 7-29, 59-81, 93-115, 125-144, FT 177-199 and 219-241" FT CDS complement(358447..359310) FT /transl_table=11 FT /locus_tag="BB0346" FT /product="probable ABC transporter, ATP-binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP0781" FT /protein_id="CAE30844.1" FT /translation="MTSLNLSMIEGGRPASRAAAATLDAVAGAGDGAALLTASNLSVVY FT RTSKGPITAVDNLSLQLGAGEFVSVLGPSGCGKSTLIKVFSGLLKPSGGKALLNGTPID FT EPRGDVGIVFQQPTLLPWKTVLDNVLVPIRALGMNVAEGRAKAMELLRLVGLEKFASNY FT PSELSGGMQQRVGIARGLIHDPALLLMDEPFSALDTMTRDRMSIELQRIWMATRKSALF FT ITHSIAEAVFLSDRIVVMSARPGRIIREVTVNLPRPRTLATLTDPEFTRLCGELRELFD FT QLVQFD" FT misc_feature complement(358582..359118) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 9.5e-53" FT misc_feature complement(358768..358812) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(359074..359097) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(359329..360426) FT /transl_table=11 FT /locus_tag="BB0347" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0782" FT /protein_id="CAE30845.1" FT /translation="MIGIEHLKRHARRGILAGAAAMALAATGGAANAAEKVTFAYGTNI FT SLSNAPTLMAIGMGYFKEAGLDVQATFFQGAAVMLPQVTQKHITFGWITPDPLVISSQP FT GRDALPVKMFYNGIYLSPFEVVVTKNSPARSLADLKGKKIGVGAMSWGNLAVTKAMMKK FT LGLELQRDYEFVPVGVGATAFRALADDKVQALNLFDTFHVQMEQMGADLRRLPMDQSYR FT ELFSSGWIAHQDTLRERPELVVAFARAAAKGVVACNANPQACVQNFWKLYPATKPADGT FT EEKKLADAVQILKVRLATMLPEQGPQQMGYYTEQSWHDYVDVLHEGGQLSTKDVDVKPL FT YTNQFVKDINDFDAAAVVSAAKQLK" FT misc_feature complement(360328..360426) FT /note="Signal peptide predicted for BB0347 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.992 between residues 33 and 34" FT CDS complement(360495..361421) FT /transl_table=11 FT /locus_tag="BB0348" FT /product="putative dioxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0783" FT /protein_id="CAE30846.1" FT /translation="MTRTEPNQPMGAAPAGLDHVGLYAHDMDAAAAMYQRLGFTLTPLS FT QHSGTHAVTREVVKAGIANRCAMLGHGYIELVAVVDPALDLRGIPEGLARYAGMHIVAF FT DTPDPGQRIAALHEAGFAAEPGVLQRYIDTADGPRLARFSQVRTPRQAMPEGLILTLRH FT ETPELLWQARYMGHPNGARALAAAIVAVEDVDAAAARYARYLGVPAERRGGEAWFTLRS FT GRLALVDQAALAARLPGSAAPALPFPAALAVEVDDLSRTAAVLDDNQVAYRRAGGQLTV FT AARDAGGAAVIFCANAEAAFAGAPEEP" FT CDS complement(361456..363150) FT /transl_table=11 FT /gene="ilvB" FT /locus_tag="BB0349" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0784" FT /protein_id="CAE30847.1" FT /translation="MTQLNGAEAMVRMLQLNGVKHIFGLCGDTSLPFYDALQRLDHGME FT HILTRDERSAAYMADAYARVTGKVGVCEGPSGGGATYLLPGLVEANESSVAVLGITSDV FT SVGSRGKYPLTELDQEALYRPLTKWNTTIDRADQIPGAVRAAFRAMTTGRPGTAHLCLP FT YDVQKHEVDPADVWAQPGHDRFPAMRFAPDPAAIEQAAARLVGARAPVILCGGGVVISG FT ACAALEELAVTLNAPVCTTVSGQGSLADTHPLNAGVVGSNGGILATRAVLADADVVLLI FT GCRAGSTSTEHWRFPSREVPILHIDSDPMVIAANYRTDVAMVGDALLALQALNREVHAR FT IDARPTDAVDGKAVAAKAKGAKLAALQPLAASLDAPIRPERVVDALNRLLPAESVVVAD FT PGTPCPYFSAYFEASKPGRHFITNRAHGALGFSMAAGMGAAIGRPSAKVVSVMGDGSFG FT FTVGEMETIVRRKVPLLMIVLSNSVYGWIKASQKAGYQERYFSVDFNRTDHARVAEAYG FT VKAWRVEDPRELDGVLKAAIEYGGPALVDIIVQPLQEAAAPVSQWMG" FT misc_feature complement(361510..362034) FT /note="HMMPfam hit to PF02775, DE Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 5.6e-40" FT misc_feature complement(361783..361842) FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT misc_feature complement(362086..362574) FT /note="HMMPfam hit to PF00205, DE Thiamine pyrophosphate FT enzyme, central domain, score 1.1e-24" FT misc_feature complement(362626..363147) FT /note="HMMPfam hit to PF02776, DE Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 1.1e-45" FT CDS complement(363350..364243) FT /transl_table=11 FT /locus_tag="BB0350" FT /product="putative mechanosensitive channel protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0785" FT /protein_id="CAE30848.1" FT /translation="MLCSLSVVVYVFHAYLFQRYLPGSNPESFRRFSAAAAFYAFAWLL FT ARMAAAALTRKARKKRKTPRLLRELVSATLFAIATVATIGVFLGQSAGGILASSGLIIA FT ILGFAIRNVLADVLSGIAIGVEAPYRIGDWVGFDATIRGRVTEIGWRTTRILTPNDTYM FT ILPNSQISRQMLTNYSAPRKQYQGELEIVLSHDISISDGKQLLFDAALSTSPAESLAPG FT QKPRVRATAYTAEGVTYKIKYWVPQFSDSTDCRDAILVAIDDAIRSQGLALPVAAPPRP FT QAIALRQPDTPDNPGA" FT misc_feature complement(363422..364042) FT /note="HMMPfam hit to PF00924, DE Mechanosensitive ion FT channel, score 4.3e-29" FT misc_feature complement(join(363902..363970,363980..364048, FT 364085..364153,364181..364240)) FT /note="4 probable transmembrane helices predicted for FT BB0350 by TMHMM2.0 at aa 2-21, 31-53, 66-88 and 92-114" FT CDS complement(364391..365302) FT /transl_table=11 FT /locus_tag="BB0351" FT /product="LysR family regulatory protein" FT /protein_id="CAE30849.1" FT /translation="MDIRGLRYFVAIVDCGSLTKAAEQVRVAQPALSQQLAALEAELEV FT PLLLRSSKGVAPTDAGSALYRHARAILKQLEATRDEVRTAGAMVSGTVAIGLPTTVAAL FT VAMPLLRAVRARHPDVRLQLFESMSGYIGELLANWRLDFAILFRDADSRIVELEPLAQE FT TLYLIGQCGASLAPDGQDSVALQALGSLPLALPSGAQGLRLLIERSFAQAGIALDVVAE FT LDSLPCLLGAAQEGLACTILPASVLAATGMQTPCWRITPEIRRTLSLCWPRSGPRTPAA FT QAVEAILREIVAERLGEDGTLG" FT misc_feature complement(364424..365047) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 3.3e-33" FT misc_feature complement(365117..365296) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.9e-23" FT misc_feature complement(365162..365254) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(365192..365257) FT /note="Predicted helix-turn-helix motif with score FT 1510.000, SD 4.33 at aa 16-37, sequence FT GSLTKAAEQVRVAQPALSQQLA" FT CDS 365420..366601 FT /transl_table=11 FT /locus_tag="BB0352" FT /product="CAIB/BAIF family protein" FT /protein_id="CAE30850.1" FT /translation="MAMTLPLSGLTVVSLEQAIAAPFATRQLADLGARVIKIERPGVGD FT FARAYDGRVNGLSSHFVWTNRSKESLTLDVKHPEAAPVLDALLAGADVLVQNLAPGASA FT RLGLDYATLAGRYSRLIVCDISGYGDSGPYRDRKAYDLLVQSEAGFLSVTGSADEPAKA FT GCSISDIAAGMYAYSNILAALIERGITGKGKRIDLSMLEATAEWMGFPLYYSYDGAPPP FT PRSGAAHATIYPYGPFPAGDGRTVMLGLQNEREWAAFCATVLRQPGLATDARFASNALR FT NEHREALRALIVECFAALDSATLMERLDEARIANARVNTMHDLWQHPQLRARERWRDVD FT TPAGPIPALLPPGQEAGSRMDPIPAVGQHTDSILAGLGFGADRIAALREAKAV" FT misc_feature 365420..365479 FT /note="Signal peptide predicted for BB0352 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.720) with cleavage site FT probability 0.668 between residues 20 and 21" FT misc_feature 365630..366196 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 9.2e-48" FT CDS 366598..367428 FT /transl_table=11 FT /locus_tag="BB0353" FT /product="conserved hypothetical protein" FT /protein_id="CAE30851.1" FT /translation="MSAPAQTYLFVPGSRPERIAKAIDAGPDAVIVDLEDAVAPADKPA FT ALDSLRAGWDGHAARAQAQRVTLLVRINAADTPWHAADLAACQALGVAHVVVPKAADAD FT ALARVRAAVPGALLYPLIESAEGYAHLPAVAGAEGVARLMFGSVDLMLDLGIGEDDQPL FT HYFRSRLVLASRLAGLPAPIDGVCVDLRDPEALAAQVLRARQFGFGAKLLIHPGQIAPV FT RRGFAPSEAQRAWARRVVDAAAAADGAAVAVDGKMVDRPVLMQAQAILACPPPA" FT CDS complement(367441..368232) FT /transl_table=11 FT /locus_tag="BB0354" FT /product="GntR family regulatory protein" FT /protein_id="CAE30852.1" FT /translation="MTARGGWRPRPGPPAPAFPEPALRYTELANTLVKRITEGQYEIGD FT QLPNELALAAQFQSSRSTVRAALDIVEGLGLVTRKRRSGTVVCSRTTNNQYTKSVHTIE FT DLVNYASHTERQILEVSPVVADEALAQALECKPGTTWLRVRMLRVEKDAAHTPLCWNDA FT YMLPDVGQRIVGKIPNGSGLLCRIIENEAGIAVADIKQSIGATAIEGEMASRLGVAPGT FT PGLEITRLYVDRANTPFLITVNTYSAHKFRFTFWMHRSDSH" FT misc_feature complement(367972..368151) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.1e-14" FT CDS complement(368234..368797) FT /transl_table=11 FT /locus_tag="BB0355" FT /product="conserved hypothetical protein" FT /protein_id="CAE30853.1" FT /translation="MTTHYLDTPLTDDAIRQLQAGDEVFLSGVIYMARDAAHKRFIDTL FT ARGEPLPVDLTGHVVFYGGPGPAKPGHVIGVVAPTSAYRMDPYATVLFDHGVKAAIGKG FT NRGPAIRESCRENVAVCFSAIGGISATLFSCIKSATLVCYEDLKTEAVQRLEIENFPLL FT VTNDAHGRDMYDEEVKKYRQLLNA" FT CDS complement(368807..369649) FT /transl_table=11 FT /locus_tag="BB0356" FT /product="putative dehydratase" FT /protein_id="CAE30854.1" FT /translation="MREIHVNEITDTVARLCIDACHLLPDDLVRSFHQAAEREVSPLGK FT SVLLKLIDNDRIARENQVSYCHDTGLTIVYADVGQDVHIVGGDYGQAVQAGVRKGYAEG FT FMRKSVVSDPLLRVNSNDNTPAVVHTEIVPGAEIRFTVVPKGGGSENWSTMKFLLPGEG FT VAGVKQFVLAAIEAAGGAACPPLTVGVGIGGSFDKVTAIAKQAILRDIGQHHPEPHIAQ FT LETELLEAINKTGIGPQGYGGMTTALWVAVETYACHITALPVAVNIQCHAGRRQTAVI" FT misc_feature complement(369638..369649) FT /note="PS00228 Tubulin-beta mRNA autoregulation signal." FT CDS complement(369715..370689) FT /transl_table=11 FT /locus_tag="BB0357" FT /product="putative exported protein" FT /protein_id="CAE30855.1" FT /translation="MFKQALAAVAVTAALCTGGAAHAAYPGSAVTIVVPFAAGQTGDII FT ARLVGKELASRLGQAFIVENKPGGGGRIGTAFVAKAKADGHTLLLTSTGPYAIAPALYP FT KTTHYDPVRDFTAVAELASTPQIIAVSNDLGVTSLAGLVQAAKAGELFYGSAGLGSTQH FT LTMELLKQKLDFPMTHAPFKGSAESKLKVMSGMLAATSDSLPAIYGNIQAGQLKALAVV FT DDQRSAYLPDVPTLAEAGFQNLSTVAFFGLVAPQGTPQEVVDTLNKELLQAVRTPEFVE FT KMRAQALTPPQARTPEQFNAYLHDQVARWKGIVEDAHVAVEGY" FT misc_feature complement(369733..370557) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.9e-88" FT misc_feature complement(370621..370689) FT /note="Signal peptide predicted for BB0357 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 23 and 24" FT CDS complement(370947..371918) FT /transl_table=11 FT /locus_tag="BB0358" FT /product="putative exported protein" FT /protein_id="CAE30856.1" FT /translation="MMKRLAHTLAALAATLAVASPAAAAQWPENPLQMIVQFPPGSTTD FT AVARDIAMRLEKQIGQSVVVVNKPGAGGIVGVSNIARAKPDGYTLGTVNYPTLTIIPHQ FT QAVPYDPLKDFSHLAVVGPYDYGIFVRADAPWKTFKELVDYGKANPGKLSFGTLGAGTT FT NELVMNRLGRDLGMQWQFIPYKGDNESVTALIGGQIDVVNASANATLPQVRAGKLRMLV FT SSGPGRWSALPDVPALRETGLVDYAQESYFSLAAPAGIPAVAQEKLAQALKTVLTDPEV FT IESFQQKYGQAVRYEDGASYAKTVARDYQRWSAGSPANVAKH" FT misc_feature complement(370971..371780) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.6e-70" FT misc_feature complement(371847..371918) FT /note="Signal peptide predicted for BB0358 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.750 between residues 24 and 25" FT CDS complement(371969..373858) FT /transl_table=11 FT /locus_tag="BB0359" FT /product="hypothetical protein" FT /protein_id="CAE30857.1" FT /translation="MSNFTSGRRLLRFAVVADSHLNPVNAGNTSPWQTNHLANPRNEVV FT VAAINRIAPAFTVHVGDVVHPLPHSTDYDGAADFATTLYRGLQAPFYIAPGNHDIGDKH FT LPGNPAACISADSCGKYEQHFGAQWQAFTEGNVCFIIINACLLGSGLPQEDAQWQFLQS FT RLAEEKAAGRRLFLFTHYPPFVTAPDEENHYDNIDHGPRRRLLELTASAGVEALFAGHV FT HTFFLNRHAGMWSYALPSSTNFRQDYAELFRVEPGEELGRNDLGKFGFFVVDIHEHGHI FT ARFVRTYGSTDPAQGEEIALQVEGDVREHAAGTVAADFRHDWARVEALPYNPPLDAFVR FT KRVRNDYYILNLWDAGMRGVRLPIHDIADEQAFERVRLLGELGHRCLVFGTAVPDAHLL FT ERLASLGPALEGYEWIGPDSAIAAHAAGQFARRGIRLFVAPVMQPPSSHSQGQYDHNMT FT SGIALGELDHLARFRPQRADASAPGVVVRIAGDEPVLESVRQAVEQAASHGVAIALHIN FT LANRKSALVNDDDQAQAARVAEAAIAKAAYPDVPMTLDTFMDIDRGYFARHGLVDRRNN FT PRPAATVLRRLSERLRGHAVRIGAITREPAQSTVRIALGDQTLDVRIGRDISF" FT misc_feature complement(373184..373828) FT /note="HMMPfam hit to PF00149, DE Calcineurin-like FT phosphoesterase, score 4.8e-13" FT CDS 373942..374751 FT /transl_table=11 FT /locus_tag="BB0360" FT /product="transcriptional regulator" FT /protein_id="CAE30858.1" FT /translation="MANLPFDLVPRAELEHEPRFASTLANGLDILRCFSAAQPTLGNKE FT ISEALGLSRPTVARLTFTLVTLGYLRRDDASKRYSLAPGVLSLIYPLLLQLTVRRVAEH FT DLAALSEKAGGPVSIGTRDRLQVVYVDTIHDRGNNGAKPDIGSSRPLLHTAMGRALLYT FT FDAAERELLMPLLLEQEPQQGDAARAALEEAFAQIARTGFCTSYGSWRPELAGLAAPLR FT YRAGDLPFAINLTLPIDAVKDGRAEQEFGPYLARLAQSIDRRLGVDV" FT misc_feature 374062..374127 FT /note="Predicted helix-turn-helix motif with score FT 1572.000, SD 4.54 at aa 41-62, sequence FT LGNKEISEALGLSRPTVARLTF" FT misc_feature 374176..374733 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 5e-09" FT CDS complement(374789..375427) FT /transl_table=11 FT /gene="scoB" FT /locus_tag="BB0361" FT /product="putative succinyl-CoA:3-ketoacid-coenzyme A FT transferase subunit B protein" FT /EC_number="2.8.3.5" FT /protein_id="CAE30859.1" FT /translation="MAWTHEQMAARAARELHDGDYVNLGIGLPTKVVQYVPQGMQVWLQ FT SENGLIGIGPPPYEDEIDADLIDAAKQTITTVPGASICSSSMSFAMIRGGRMDLTILGA FT MQVSACGDLANWMIPGKMVKGMGGAMDLVGGVRRVIVLMEHNTRDGGLKILEQCSLPLT FT GKRVVHQIITDLAVMDVTADGLVVTELAPGVSAEMVQEKTEPRLAFACH" FT misc_feature complement(374819..375418) FT /note="HMMPfam hit to PF01144, DE Coenzyme A transferase, FT score 1.4e-57" FT misc_feature complement(375272..375298) FT /note="PS01274 CoA transferases signature 2." FT CDS complement(375441..376145) FT /transl_table=11 FT /gene="scoA" FT /locus_tag="BB0362" FT /product="putative succinyl-CoA:3-ketoacid-coenzyme A FT transferase subunit A" FT /EC_number="2.8.3.5" FT /protein_id="CAE30860.1" FT /translation="MTKIFEDAAAALSGVIKDGQTIAVGGFGLCGIPSTLIEGLRDSGV FT ANLTCISNNAGVDDFGLGLLLQTRQIKRMIASYVGENKEFERQYLNGELELEFNPQGTL FT VERLRAGGAGIAAFFTRTGVGTVVEENKETRDFGGDTYVMEQALKADVSLVKAQRADTS FT GNLVFSRTARNFNPEVAMAGGVTIAEVEELVEAGEMDPDAVHLPGIFVDRIIVVPNPEK FT RIERKSFRTRGQ" FT misc_feature complement(375483..376136) FT /note="HMMPfam hit to PF01144, DE Coenzyme A transferase, FT score 2.7e-110" FT misc_feature complement(376047..376094) FT /note="PS01273 CoA transferases signature 1." FT CDS complement(376292..377236) FT /transl_table=11 FT /locus_tag="BB0363" FT /product="LysR family regulatory protein" FT /protein_id="CAE30861.1" FT /translation="MHPYCALMHNWRMDKYPEWNDLKVFLTVARLGTISLAGERLGIEH FT STVSRRIDRLEAKLKVVLFDRRRSGYSLTDAGNALIPHAEKMESALLAAVEESLGLADF FT IEGTVRVGTPEAFGINVLAPSLARLRQTHPGLNVELMAQPQFPSLVTREVEILVTLEPP FT AMGRYKVAKLAQIHYFLYCSAGYKKSHPPIRQLSDVAQHEFVDYIHDGSVSERYRVLEE FT LVPQPRRSFTTTSVLAQRAAAVAGMGLVLLTPYVANAGQADLVEVFPGRPLITRSLWIA FT APEDLLRIKRYQSVWNFIRQLMAQHPDLFHPPS" FT misc_feature complement(376325..376933) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 5e-29" FT misc_feature complement(377003..377182) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 5.2e-16" FT misc_feature complement(377048..377140) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(377078..377143) FT /note="Predicted helix-turn-helix motif with score FT 1536.000, SD 4.42 at aa 32-53, sequence FT GTISLAGERLGIEHSTVSRRID" FT CDS 377390..378205 FT /transl_table=11 FT /locus_tag="BB0364" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /protein_id="CAE30862.1" FT /translation="MTGTERYQNYQVIEFDRPAPRVLRLTLNRPERMNALDSRGHAELA FT DVWRDIDADPDVSAVVLRGAGRAFSAGGDFSMLEEMNEDFKVRARVWREARDLVYNIVN FT CSKPIVSAIRGPAVGAGLVAALLADISVAAKSARIVDGHTKLGVAAGDHAAIIWPLLCG FT MAKAKYHLMLCEPLNGEQAEALGLVSLCVEDDALEDKALEIAQRLAAGAPAALRWTKYA FT LNNWLRQAGPIFDTSLALEFMGFGSPEAKEGVSALMEKRAPAFDQDIAI" FT misc_feature 377456..377968 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 1.2e-35" FT misc_feature 377717..377779 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 378220..379110 FT /transl_table=11 FT /locus_tag="BB0365" FT /product="conserved hypothetical protein" FT /protein_id="CAE30863.1" FT /translation="MTPIKTVAFIGVGNMGAPMARCARRAGFELIVCDRNPDVLAAFAQ FT EGVRVTASISDCAAADAVVVLLANDAQIMETMLGGQGLAQAVPAGHRPIVCMMSTTLPD FT TLRALEAPLAAVGARLVDAPVSGGIVGAEAGTLTIMMGGETADVEAVRPLMQAMGERLF FT HCGALGSAEIAKVINNMLCVANMFLTAEAIELAESHGVAFESLTPILSVSTGLNFLTAD FT APTARAQYGAWARSEQAYAAIHQIVGKDLHLALKLAQLASLDLGLLKSVSQYVDADDPQ FT AMARWMRGGRAASAA" FT misc_feature 378229..378729 FT /note="HMMPfam hit to PF03446, DE NAD binding domain of FT 6-phosphogluconate dehydrogenase, score 0.0035" FT CDS 379200..380408 FT /transl_table=11 FT /locus_tag="BB0366" FT /product="putative exported protein" FT /protein_id="CAE30864.1" FT /translation="MKQLKHALAAASLSALAMAAGSAHAQESKTLILGVSAPMSGAAAT FT WGLGQEWTAKQAAKEINDAGGVKIGGTTYKFEVRAYDNKYNAAEGTKVAQNIVNRDKSR FT YVVGSIGTAPILALQSLTERNGVILFTSAWGKTVKGPQKPYTLTQSNTPFEILAPLYDY FT VKAKHPAIKTVAMLNPNDATGKETEPVAQKAWEKLGVKVVSVNWYERGTTQFQPIAQKL FT AAVKPDAIDLGVTPPADAGVVFRELSVLGWNGVKVQPVGTGAAQLVEIGGKAADGVYMG FT FSGDYEGAQATAKQRELNEGMKKAIGESLNPLQLAPYDSVYALKAGMEAANSIEPADIV FT KALPTIVFETSYGKTAFGGAQTYGSPQQMLIPIMITQIQDGKLVEVERVVPQELQQRLA FT KSN" FT misc_feature 379200..379274 FT /note="Signal peptide predicted for BB0366 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 25 and 26" FT misc_feature 380001..380024 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT CDS 380444..381319 FT /transl_table=11 FT /locus_tag="BB0367" FT /product="branched-chain amino acid transport system FT permease" FT /protein_id="CAE30865.1" FT /translation="MDVYMQLTMNSLQIAAAYILFSLGLTLIFGVMRIVNFAHGEFFTL FT PLLVMGVLVPLLVGAQLPLIVSYALSGVLGIAATLLLGGLIYKFALKRFQRDMTGSFVV FT SVGLSLLLQGVFLETFGGVPTKLPTLVEGTVNILGAFVTVQRLIITGCALLVAVFMCWT FT IVSSRLGKALRAVAEDHEAAMLQGIPYRRIALAGFLIATVLAAIAAVLLSPVTVSSPII FT GNDYLIRGFIAIVIGGLGSIPGAILGSVLIAVIESLGGYYFDPTWATITMFALTMFVLL FT VRPKGILGNG" FT misc_feature 380453..381313 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 1.4e-34" FT misc_feature join(380486..380554,380567..380626,380636..380704, FT 380741..380809,380867..380935,381020..381088, FT 381131..381199,381218..381286) FT /note="8 probable transmembrane helices predicted for FT BB0367 by TMHMM2.0 at aa 15-37, 42-61, 65-87, 100-122, FT 142-164, 193-215, 230-252 and 259-281" FT CDS 381312..382256 FT /transl_table=11 FT /locus_tag="BB0368" FT /product="branched-chain amino acid transport system FT permease" FT /protein_id="CAE30866.1" FT /translation="MAKPFFTPAAAAIVLVALAGGLLQGGGLAASLVLWLAINVLITAS FT FRFVTLIGELNFAVAGFVGLGAYMAGVAAVQLEWPFLLTLAASAVFAGLVSLVFGYITL FT RAKGAYFMLISFAFTEVIRMIYTKTEAVGGSSGMIGIFAPAYLEAYYPAFVIAVVLALL FT WVLWRLEKSDFGKVLVAIRNNDAIVETVGINVHLTKVLCLGVSSFVAGIAGALLAYANN FT VISPGDFGFLLAVYALAYLKVGGESHILGAVVGAIVLTLLGQFALSFGPYEHIFYGAAI FT VISVLLMPGGLIGLGRYFNRRPPKLGAAAKSQA" FT misc_feature 381312..381398 FT /note="Signal peptide predicted for BB0368 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.570 between residues 29 and 30" FT misc_feature join(381369..381437,381474..381542,381552..381620, FT 381633..381686,381744..381812,381909..381968, FT 381981..382034,382053..382121,382131..382199) FT /note="9 probable transmembrane helices predicted for FT BB0368 by TMHMM2.0 at aa 20-42, 55-77, 81-103, 108-125, FT 145-167, 200-219, 224-241, 248-270 and 274-296" FT misc_feature 381384..382202 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 3.6e-06" FT CDS 382265..382999 FT /transl_table=11 FT /locus_tag="BB0369" FT /product="ABC transport system ATP-binding protein" FT /protein_id="CAE30867.1" FT /translation="MDAQVLLKVEGMTRRFGGLVAVKDLSFEVREGEILGLIGPNGAGK FT STTFNVVSGYYKPTSGRLAFKGRDITGLGPARIARQGLVRTFQHDSLLREMTVYDNIVV FT GTFAMLRQRHERDARVRETAALMGLTEVLDEVAGNLPHGLQRLVSIAIAFAARPSLLCL FT DEPLTGLNQTEAMAVLAIFRRMREEHGISILLVEHNMKAVMDICDRIVVLDYGVFLATG FT TPQEIQTNPDVISAYLGKRHEK" FT misc_feature 382358..382912 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 5.6e-50" FT misc_feature 382379..382402 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 382989..383711 FT /transl_table=11 FT /locus_tag="BB0370" FT /product="ABC transport system ATP-binding protein" FT /protein_id="CAE30868.1" FT /translation="MKNNDHALDVDGLSVKYGIVPAVNAASFAVRKGSIATIVGSNGAG FT KSTIMKALTGLVAPAAGRVRLYGEDITGLAPDALVERGLVLVPEGRRLFKGMTVGENLE FT LGAYREKDKRAIRHGIEGVLARFPALKSRLGSLAGSLSGGQQQMVAVGRALMAKPRLLL FT LDEPTIGLAPAIVDTIAQIIQDIAAEGVDVMLVEQNAEMALEIAAHAFILERGEIQLEG FT PAAELASSEAVRKAYLGI" FT misc_feature 383085..383636 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 5.9e-46" FT misc_feature 383106..383129 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 383409..383453 FT /note="PS00211 ABC transporters family signature." FT CDS 383760..384521 FT /transl_table=11 FT /locus_tag="BB0371" FT /product="putative short chain dehydrogenase" FT /protein_id="CAE30869.1" FT /translation="MNRLEGKVVFITGGGAGIGRASALLFAREGARVVIAERDADAGRQ FT TVELIAGQGGPRALFVPTDVTEADSVEQAVARTVAEYGRFDVLYNNAGGSTVRDSRVTD FT TPVEEFWAKMKLDLFGTWLGCRYGIQAMIDAGHGGAVINSTSIFALIGTHGKDAYTAAK FT GAVSALTRSMAVEYAQHRIRVNAVAPGATATERVLKLLQEDGVTSKSLDGQLFGLVQPE FT DIAHAALYLASDESKSTTGHILAVDGGLTIS" FT misc_feature 383772..384509 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 9.8e-67" FT misc_feature 384195..384281 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 384539..384829 FT /transl_table=11 FT /locus_tag="BB0372" FT /product="conserved hypothetical protein" FT /protein_id="CAE30870.1" FT /translation="MFRHIVMLGFKQPLTTQDHDYMVQACAAIRRELPGVIDLRFVANE FT ADRGLAYTHAFVGDFVDAAAHEHYQRAAIHVPLKQRVMELSSHLVVLDCRL" FT CDS 384864..385646 FT /transl_table=11 FT /locus_tag="BB0373" FT /product="putative short chain dehydrogenase" FT /protein_id="CAE30871.1" FT /translation="MDMRLAGKSVLITGASQGIGAGLAHAFAGEGCALVLVARSHEKLQ FT ALRAELLARHDVGIEVQAMDLTRLDSAEQLAASYGAVDILVNNAGGIPGGDLWSVDAQR FT WRAGWELKVMGYVDVTRAFYRRMRERGHGVILNNIGSGGENYDFDYIAGTAGNAALMAF FT TRALGGKSLRDGIRVVGVNPGPVATARIETLMRGRARELYGDAERYTELLARLPLGRAA FT SVQEVADLFVFLASPRSAYTSGVIVTIDGGMTSNKSIA" FT misc_feature 384879..385622 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 9.1e-42" FT CDS 385662..386813 FT /transl_table=11 FT /locus_tag="BB0374" FT /product="NADH:flavin oxidoreductase / NADH oxidase family FT protein" FT /protein_id="CAE30872.1" FT /translation="MNQEAENTKLFAPLSLRGVVLPNRVLISPMSQYSAVDGVVQDWHR FT YHVAAMARGYPGSVMLEVAAVTRDGRGTPGDLGIWSDEQIAGLAELARIIEAHGVVPAI FT QIGHAGRKASMQRPWEGGRPLALDSSDEAWQTVGASALPIQDGWPAPRQLAQHELAGLV FT DSFRAAAARAVQAGYRFVEVHAAHGYLLHGFLSPISNQREDQYGGSLENRMRFPLEVVA FT AVRAALPDEVPLSVRISAVDGMEHGWQLADSIVFARELKALGVDLVDCSSGGIQGSATA FT GKGPQAVKRGPGFQVPFAHAVRQEAGIATIAVGLIVEPAQAEAILRQEQADLIAIGREA FT LQNPNWPLHARQALGADRDYSAWPAQYGWWLQRRPKVAWEEGR" FT misc_feature 385686..386732 FT /note="HMMPfam hit to PF00724, DE NADH:flavin FT oxidoreductase / NADH oxidase family, score 1.5e-73" FT CDS 387063..387818 FT /transl_table=11 FT /locus_tag="BB0375" FT /product="putative exported protein" FT /protein_id="CAE30873.1" FT /translation="MTVLLLIVLVLLAAGLAWRQWRRASRMLYGLSLVLFLALGCGPIA FT AWLLDGLQSDYQAKPPIAWGQRNAIVLLGAGTEQAAGRIEPGIFSYARIVEAARRYHDC FT RKAAAQCKLIVSGGDAAYHGDAEANVYRDPLVALGVDAADVLPEPGSMNTWQNAQFTSA FT VLRRYDADRVVLVSSGIHLKRSALYFAHFGVAATPVRADYLHARWSVVPLSYNFAVADF FT ALHEYLGIVRYHVYNLLGWNPARTQPGQA" FT misc_feature 387063..387119 FT /note="Signal peptide predicted for BB0375 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.923) with cleavage site FT probability 0.735 between residues 19 and 20" FT misc_feature 387063..387773 FT /note="HMMPfam hit to PF02698, DE Uncharacterized ACR, FT COG1434, score 1.3e-06" FT misc_feature join(387072..387125,387144..387212) FT /note="2 probable transmembrane helices predicted for FT BB0375 by TMHMM2.0 at aa 4-21 and 28-50" FT misc_feature 387153..387185 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 388153..388602 FT /transl_table=11 FT /locus_tag="BB0376" FT /product="putative membrane protein" FT /protein_id="CAE30874.1" FT /translation="MRRVDYRDLIGGGLVTLAGAAAMYHSLTAFSVGTAARMGPGYFPA FT LVGGLLMLCGVMILIPALLRAGPLPVLEIRPLFWVSLSVLAFALLVLSFGLVPAIIAQS FT VLAGISDCKLSLRNSLLLAGGLSVGATLIFKVGLGVILPAFAWPW" FT misc_feature 388153..388245 FT /note="Signal peptide predicted for BB0376 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.858) with cleavage site FT probability 0.698 between residues 31 and 32" FT misc_feature join(388180..388248,388273..388341,388384..388452, FT 388510..388578) FT /note="4 probable transmembrane helices predicted for FT BB0376 by TMHMM2.0 at aa 10-32, 41-63, 78-100 and 120-142" FT misc_feature 388354..388428 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS 388615..390132 FT /transl_table=11 FT /locus_tag="BB0377" FT /product="putative membrane protein" FT /protein_id="CAE30875.1" FT /translation="MELFDNIMLGLSTALAWNNLLWCIIGVSLGTLIGVIPGVGTLATM FT SLLFPITYVLEPTAALIMLAGIWYGSTYGGSTASILLNLPGTPANAVTCLDGFPMAKQG FT RGGVALLMTTVASFFGASVGIVMMMLFSPLVAEVAFKFGPAEYFSIMALGLVAASVVSS FT GSAIKGITMVVGGVMLGLVGTDVNSGVARFDFGFPELQDGVQIVALAMGLFGVTEIIAS FT INHVKAADRKIDVSMKAMLPTRDEMKRSWGPMARGSGLGSFFGVLPGVGPTVAAFMAYA FT LEKRTSKTPERFGRGAIEGIMAPESANNASDQASFIPTMTLGIPGSVTMALIIGALMIH FT GIQPGPQMLTEQPEMFWGLVMSFWIGNIVLVILNVPMIGLWVRVLTIPYHVLYPAIVMF FT ICIGTYAVNNNVFDVYAVLVFGIAGYILRVLGFEPAPLLLGYVLGPMLEENFRRAMLLS FT RGSLQTFIERPISMWVLLLTVFLLAWGMWSSLRQRPAARMAPASGST" FT misc_feature 388669..389931 FT /note="HMMPfam hit to PF01970, DE Integral membrane protein FT DUF112, score 2.3e-75" FT misc_feature join(388672..388740,388753..388821,388936..389004, FT 389047..389115,389119..389187,389230..389298, FT 389383..389451,389560..389628,389689..389757, FT 389767..389835,389854..389910,390019..390078) FT /note="12 probable transmembrane helices predicted for FT BB0377 by TMHMM2.0 at aa 20-42, 47-69, 108-130, 145-167, FT 169-191, 206-228, 257-279, 316-338, 359-381, 385-407, FT 414-432 and 469-488" FT CDS complement(390213..391586) FT /transl_table=11 FT /locus_tag="BB0378" FT /product="sensor kinase protein" FT /protein_id="CAE30876.1" FT /translation="MTCFLRRLWNSISFRLTLNYGLMAILTTLILIVFIYAQFIGALRT FT EYTRQITSTAQRLEVAYEEGGRNALVSAIELTLSDRIDADREIYLLLDEHGRKIAGNLD FT ESLPLDSTHTEVYEADIVHDAVPTRGHLKVLTLGGGETLVVGHDSSEIGDITSLIGRAT FT ATAILLAVLLVLLGTYIFRRELARRVSHIRQTTQQIGAGQLSKRISASTGEDEFTLLNR FT DVNAMLDRIELLMKSARHISDTIAHNLRTPLTRIVGALRTARRPGVSMAEVLDANQHAI FT ESIERLNVLLEKLLQIAELEAGIQRRSFRPCELDVIVADVLEMYGTLAEEKGVSLLRAK FT LDNVTLHGDANLLASALANLIDNAVKFAASRVVVDVTRQNRTALVTITDDGAGLPPAEY FT EHLGKHFYRSDPSSEGHGLGLTSVKSIVGLHVGTLGFSDARPGLRVTVSLPLDPKSKP" FT misc_feature complement(390231..390545) FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 3.6e-29" FT misc_feature complement(390678..390878) FT /note="HMMPfam hit to PF00512, DE His Kinase A FT (phosphoacceptor) domain, score 1.7e-06" FT misc_feature complement(390888..391100) FT /note="HMMPfam hit to PF00672, DE HAMP domain, score FT 1.6e-09" FT misc_feature complement(join(391047..391115,391461..391529)) FT /note="2 probable transmembrane helices predicted for FT BB0378 by TMHMM2.0 at aa 20-42 and 158-180" FT misc_feature complement(391476..391586) FT /note="Signal peptide predicted for BB0378 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.748) with cleavage site FT probability 0.539 between residues 37 and 38" FT CDS complement(391583..392296) FT /transl_table=11 FT /locus_tag="BB0379" FT /product="transcriptional regulatory protein" FT /protein_id="CAE30877.1" FT /translation="MWQCLLIEDDQANARYLANGLTELGHMVTVSGDGAGGLENAMKDQ FT WDIIILDRMLPNNVDGLSILSTLRALGKKTPVLVLSALSAVDDRVDGLRAGGDDYLVKP FT FSFSELVARLDALVRRTRPDPDVKELRIADLSVNVATQKVQRAGVPISLQPQEFRLLVY FT LMLHAHRIVTRTMLLETIWGYSFDPQSNVIDVQVSRLRRKIDTASATPLIHTVRGAGYT FT LSDKQGPGNMDLDKA" FT misc_feature complement(391637..391852) FT /note="HMMPfam hit to PF00486, DE Transcriptional FT regulatory protein, C terminal, score 1.9e-20" FT misc_feature complement(391931..392293) FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 1.3e-31" FT CDS 392776..392991 FT /transl_table=11 FT /locus_tag="BB0380" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc2574 or Rs00781 SWALL:Q8XWA1 (EMBL:AL646070) (80 FT aa) fasta scores: E(): 0.016, 44.06% id in 59 aa" FT /protein_id="CAE30878.1" FT /translation="MPSPIPDEPLPKQETVQLTISLPAELKDALDRYVATLWPSLWTEG FT RCCYACHMLARFTQTDRGYRCAYRTL" FT misc_feature 392917..392934 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 393007..393891 FT /transl_table=11 FT /locus_tag="BB0381" FT /product="hypothetical protein" FT /note="Weakly similar to Bacillus thuringiensis FT hypothetical protein Pbt074 SWALL:CAD30119 (EMBL:AL731825) FT (349 aa) fasta scores: E(): 0.058, 25.98% id in 304 aa" FT /protein_id="CAE30879.1" FT /translation="MATQPTLSVDQIKRLVVKAILSDDKLFENLVLKGGNAIDLIHQIT FT ARASVDIDFSISEDFPGGADELHRRVDRALIRTFRVEGYQVFDLKMAEKPVHLSEEMAD FT FWGGYGFEFKLISEALSKAHGPDVGELRKYALSLGQGTKFLIDISRHEYVAHKQRMDFE FT GYVIYVYSPEMIVCEKLRAICQQMPEYGPIIRRTRPGSARARDFVDIYYLVTMLDLDVT FT TDEYRAVSAEMFERKRVPLRLLGRIQAYREFHRADFDAVRATISPNIVLKDFDTYFDFT FT LNLVDRLEPLWNV" FT CDS complement(393868..394755) FT /transl_table=11 FT /locus_tag="BB0382" FT /product="hypothetical protein" FT /note="Weakly similar to Halobacterium sp. Orf H1617 FT Vng6088C SWALL:O54575 (EMBL:AF016485) (276 aa) fasta FT scores: E(): 0.56, 23.44% id in 290 aa" FT /protein_id="CAE30880.1" FT /translation="MAARSRIQIAKQDIFQCLANQPSPVFKLSDLKKILSEQRTHWRLA FT QRTTTQEFIDFLEKQGKLTTFHFPFPHRAETRYVWGATPLLEILLTLKPNCYYSHYTAV FT RMHGLTEQIPKTIYLNHEQRLKSQSIGGLAQERIDMAFKRKARESNNVIDFEDTKIYLI FT NGKNTDRLGVVTESVTYDSDAPVTVSVTNLERTLIDITVRPAYAGGIFEVLRAFQLAKD FT QVSVNALIAMLQKIDHTYPYHQAIGFYLERAGCRPSQLDLIKRFPMNYDFYLANNMGEI FT DYVKAWRLYVPKGL" FT tRNA complement(395490..395565) FT /note="tRNA Phe anticodon GAA, Cove score 86.41" FT CDS 395820..397094 FT /transl_table=11 FT /gene="hemA" FT /locus_tag="BB0383" FT /product="glutamyl-tRNA reductase" FT /EC_number="1.2.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0677" FT /protein_id="CAE30881.1" FT /translation="MSVAVLAFGLNHTSAPVSVRERVSMPVDLVKPALEGLRATFGGAV FT REAAILSTCNRTELYCAAEGQVAEHLPAWLAEHNRLEAAALRPHLYRHQHDDAVRHAFR FT VASGLDSMVLGEPQILGQMKDAVRAANEAGALGTLLHQLFQRTFSVAKEVRSQTAIGAH FT SVSMAAAAVRLAERVFGQLEDARTLFIGAGEMIELCATHFAAQRPRSMVVANRTIERAE FT TLAGRFSAQTMKLADLTERLAEFDVIVSCTASSLPILGLGMVERATRQRRHRPMVMIDL FT AVPRDIEPEVGRLDDVYLYSVDDLGRLVQSGTDARRAAVVQAEAIIETRVQGFMHWMQS FT REVVPVIRDLHQAADDVRAAELERARRMLARGESPEAVLEQLAHGLTQKYLHGPLAALN FT RSEGDERRQLLAWVPRLFPGRDSRR" FT misc_feature 395826..397079 FT /note="HMMPfam hit to PF00745, DE Glutamyl-tRNAGlu FT reductase, score 9.1e-180" FT misc_feature 396294..396341 FT /note="PS00012 Phosphopantetheine attachment site." FT CDS 397181..398263 FT /transl_table=11 FT /gene="prfA" FT /gene_synonym="sueB" FT /gene_synonym="uar" FT /locus_tag="BB0384" FT /product="peptide chain release factor 1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0678" FT /protein_id="CAE30882.1" FT /translation="MKPSMRSRLEQLAHRLIEVDALLAEPETAADMDRFRKLSRERAEL FT EPVVEAFNAFLGVEADVATAQEMLSDPDMKAMAEDEIKTGRARIEEMEAALQLLLLPRD FT PDDGRSLFLEIRAGTGGDESALFSGDLLRMYTRYAETRGWRVEIMSESESELGGYKEVI FT ARIDGDGAYGRLKFESGAHRVQRVPATEAQGRIHTSACTVAVMPEADAMSDIVINPSDL FT RIDTFRASGAGGQHINKTDSAVRITHVPTGLVVECQDDRSQHRNKDKAMQVLAARLKDK FT EMRERQSKEAAERKSLIGSGDRSERIRTYNYPQGRVTDHRINLTLYKLQQIMEGDLDEL FT TGALLAEHQAEQLAALGHDL" FT misc_feature 397367..397714 FT /note="HMMPfam hit to PF03462, DE PCRF domain, score FT 7.3e-65" FT misc_feature 397802..398143 FT /note="HMMPfam hit to PF00472, DE Peptidyl-tRNA hydrolase FT domain, score 6.5e-71" FT CDS 398331..399086 FT /transl_table=11 FT /gene="hemK" FT /locus_tag="BB0385" FT /product="heme biosynthesis protein" FT /EC_number="2.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0679" FT /protein_id="CAE30883.1" FT /translation="MLAEHVLGRSRAWLLAHDTDPVEPAHEAAWRQLAARRLAGEPMAY FT LLGGREFMGHWFALTPDVLIPRPDTELLVETALHWLQGRAAPRVLDLGTGSGAIAVSVA FT LGCPQAEVTATDLSAAALAVAEGNAQRLGARVRCLAGDWYEALPAQDRYDLIVSNPPYI FT AREDAHLAQGDLRFEPRGALTDENDGLAALARIAGGAPGRLLPGGAIWMEHGWDQAEAA FT RALLRQAGLREVHSRRDLAGIERISGGYL" FT misc_feature 398472..398507 FT /note="PS00213 Lipocalin signature." FT misc_feature 398796..398816 FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT CDS 399124..399450 FT /transl_table=11 FT /locus_tag="BB0386" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0680" FT /protein_id="CAE30884.1" FT /translation="MSDVQEFIRETVTQHPVVLFMKGTAQFPQCGFSGRAIQILKGCGV FT KKLVTVNVLEDDEVRQAIKTFSNWPTIPQLYVGGEFIGGSDIMSEMNESGELKQLLDDS FT GATA" FT CDS 399455..400015 FT /transl_table=11 FT /locus_tag="BB0387" FT /product="probable flavoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0681" FT /protein_id="CAE30885.1" FT /translation="MRRLVVGITGATGAIYAVRLLQALRGVSDVESHLIVSASGVLNIK FT HELDVGRHDVQALADHVHSVRDVGATLASGAFQTAGMVIVPCSMRTLAAVAHGLSDNLI FT TRAADVTLKERRRLVMMVRETPFNLAHLRNMTAVTEMGGIIFPPLPAFYHRPASIEEMV FT DHTVARVLELFDIEVPGPHWAGM" FT misc_feature 399458..399823 FT /note="HMMPfam hit to PF02441, DE Flavoprotein, score FT 1.7e-41" FT CDS 400257..401249 FT /transl_table=11 FT /locus_tag="BB0388" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0682" FT /protein_id="CAE30886.1" FT /translation="MQRRRFLAKVARIAAAVGVSACAANGSFAATGDFPNKPLDIIVTF FT PPGGGTDMLARLIGNYLTESLGQTAVVENRPGASGNVGARLVADRAPDGYSLLMVNSSF FT AVNPGVFRNLPFDPKKDFAAVINVAYVPSVFVVPAGSKYKTLGELMAAAKQTNTQVTYG FT SCGNGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFIKA FT GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAK FT VMQRDDVQKKLADLGYSTASDGPEVFQKMVETDIDRFSALTKQIGLKVD" FT misc_feature 400257..400343 FT /note="Signal peptide predicted for BB0388 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.986 between residues 29 and 30" FT misc_feature 400416..401237 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.3e-97" FT CDS 401268..402263 FT /transl_table=11 FT /locus_tag="BB0389" FT /product="4,5-dihydroxyphthalate decarboxylase" FT /EC_number="4.1.1.55" FT /note="ortholog of Bordetella pertussis (BX470248) BP0683" FT /protein_id="CAE30887.1" FT /translation="MSSKLKISLSCGDYDRTRALFDGRAPIEGCEVTAVPLEPEEAFHR FT AFRYHEYDVTEISMSSHMMTTARGDNEYIAIPAFLSRVFRHSGIYVRTDRGIDTPQDLR FT GKTIGVPEYQITANVWIRGILEDAYGVKPQDIKWRRGGIEEPGRGERAPIELPDGIDLQ FT QIPDDKTLSDMLEAGEIDGYIGARAPSCFLRGAPNVGRLFNDYLKTEQDYFRETRIFPI FT MHMVGIRRSLVEQNPWLPVSVYKAFLKAKMLAVKELNEICHLAVTLPWMVHHYNAAREL FT MGDDYWPYGLDANRHVIETFARYHYGQGLSRRLVKPEELFAASSLDLSKI" FT CDS 402279..403148 FT /transl_table=11 FT /locus_tag="BB0390" FT /product="molybdopterin dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0684" FT /protein_id="CAE30888.1" FT /translation="MKAPALQYHAPASLPQALQLLSEHDNARVLAGGQSLVAMLNMRFA FT FPDCLIDINRVPELAYIRHEQGEVCIGAMTRQREIEFSPLVAQHLPLWREAVLQVGHRQ FT TRNRGTVGGSLCQLDPSAEIPTVALAMDATLSVASVRGTRTLAMADFPAGYMTPALEPD FT EMLVGLAVTPWPAGHGHAFVEFARRHGDFAIVSVAVLLLLDDAGCVARASITLGGVAAT FT PVRMAQAEAALLGQPAEPATLARAAALCAAIDAKADSYVPSWYRQRLARVLTERALTQA FT VARAKESE" FT misc_feature 402288..402800 FT /note="HMMPfam hit to PF00941, DE FAD binding domain in FT molybdopterin dehydrogenase, score 9.4e-24" FT misc_feature 402813..403136 FT /note="HMMPfam hit to PF03450, DE CO dehydrogenase FT flavoprotein C-terminal domain, score 1.9e-05" FT CDS 403145..403654 FT /transl_table=11 FT /locus_tag="BB0391" FT /product="probable 2Fe-2S ferredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0684A" FT /protein_id="CAE30889.1" FT /translation="MSDITESTAQHVSLTVNGRACGGCAEPRMHLADFLRGELGLTGTH FT IGCEHGVCGACTVLVDGYSTRSCLMLAVQAQDSRVDTIEGLAGEDDALHPIQQAFHELH FT ALQCGYCTPGILMSVAELLAANPDPDEAQVRDVLSGHLCRCTGYQNIVAAVLRAAQLMR FT AEAGHD" FT misc_feature 403184..403366 FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 0.023" FT misc_feature 403286..403312 FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature 403388..403615 FT /note="HMMPfam hit to PF01799, DE [2Fe-2S] binding domain, FT score 3.9e-43" FT CDS 403647..406028 FT /transl_table=11 FT /locus_tag="BB0392" FT /product="probable dehydrogenase/oxidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0685" FT /protein_id="CAE30890.1" FT /translation="MTDATSPGLGCSEPRIEDDALLRGQARFLDDIEVEGVLHACFVRS FT PHAHARLVSIDLSAARAMPGVAAVYGARDLFGQLTSWRMPLGFPLAALPDDTTPFVLAE FT REVAFVGEAIAVVVADSRHIAEDAAARVAIEYEVLGAVVDCRDALRPDAPLVRGELASN FT ILQQYTLAYGDCETAFAQAHRVLEDDFWVHRGCAHPMEGRGVLARMDRATDTLTVWSST FT QMAHELHYTLAMMLGQPEDRLRVVTPDVGGGFGAKFMIYPEEMAIPAAARKLGRPVKWV FT EDRREHFTTSIQERDQYWKVAMAIDDQGHVLGIRGNFVHDNGAYTPQGTNVPYNAASSM FT TGPYVVPAFSLDVSVAYTNKVPVATVRGAGYPQAAFVMERMMDRVAAELGIDPGECRRR FT NLIGPAKIPYTKPLKSRAGMPLTIDSGDFPALQACALQASDYDGFAVRRDAALARGRWR FT GIAVANSVKPTGRGPFEVARVRVQPSGQVSIYTGALAMGQGIKTTLAQICAGHLGVPVA FT AVEVQAGDTAYVGYGMGGFASRQAIMAGSAVDQAAAQVRRQALETAAAVLKAEAETLEL FT ADGEVRAPDGQSVSLARLAMLRKGVPGYALVSPGDPGLDATAYFHCDAQTYAGASHVCE FT VEVDPATGAIEIVRYVAAQDSGRIINPQLAEGQVHGGVVHGIGNALFEWMGYDAAGQPL FT STTFAEYLLPTAPEVPPIEVVFQPSPTPLNPLGVKGVGECATIPVAAAVVGAVEHAVAH FT CGVRVTEFPLTPVRLLELLTQAEARAAAPTDSGEFVDGVH" FT misc_feature 403713..404069 FT /note="HMMPfam hit to PF01315, DE Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain, score FT 3.7e-37" FT misc_feature 404073..405776 FT /note="HMMPfam hit to PF02738, DE Aldehyde oxidase and FT xanthine dehydrogenase, molybdopterin binding domain, score FT 1.2e-141" FT misc_feature 405063..405092 FT /note="PS00215 Mitochondrial energy transfer proteins FT signature." FT CDS 406072..406791 FT /transl_table=11 FT /locus_tag="BB0393" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0686" FT /protein_id="CAE30891.1" FT /translation="MLDVPRIMPCLPGARLTEVLGPDKYRGSVTVRLGPIKLGFEGQAE FT LVRKDEATHTAWLQGSGMDPKGRGSAKSEFSFALTPAAHGGTDVTVNTQLALSGAVAQY FT GRGSGMIAEVAAQILGQFEQNLARSLSGEAQQGPVQPAGAMPARPGSAAPVAAAAPAGS FT AVSPDAQAVLLQAQAVLSQAQAVLAMAQASLARPARGAPSRAAAPSAELNMLGIGMRAM FT WARVRYTVGGWFGRRES" FT CDS complement(406967..408040) FT /transl_table=11 FT /locus_tag="BB0394" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3435" FT /protein_id="CAE30892.1" FT /translation="MSSSADLHPHARALLADHYAAIDADLPALLELLFARSAGEDWHKA FT GTFKHHLLGVYRTLALWNQPREVRLLGLFHSVYGNEYVDLTLFDRERERATLRQYLGEE FT AEQWVHLFCAMPRTQFVQRILAGEGRGATGLALQGADGQPLTLTPRQVAAFIVVSAADV FT GEQWHSWQDEIFAGYPHQERRDTSTHWAASLWPGPLKPPARILGMLSRLLQPLSTLPAG FT TGIPTPPAFGHCTAVLDAGDEAAAAALYWQVITRMHPMTEMDSARHLLQAAIAHNPWVA FT EPRLLLAQLALTAQDYDTALEQAAAGLAALQAWGTSWDKRIEWSGWMAWARILLQNARD FT RQWPATLGGLNGLGLVG" FT CDS 408208..409002 FT /transl_table=11 FT /locus_tag="BB0395" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3434" FT /protein_id="CAE30893.1" FT /translation="MRIRHLVAACAALFSIATAPALAQDAELKVGVTVGPHAQIGEVVK FT SVAARDGLRVTLVEFSDFIQPNAALDAGELDLNIYQHRPFLDAQNKARGYRLAPVASAV FT VQQMGVYSRRHQTLDALPQGAKVAIPNDPTNGARALLVLQAAGLIELKPGVTVNASLFD FT IAANPRNLKFLEIEAAQLPHSLADVDAAAVNSAYAIPAGLSPARDALALESKEAPFAVV FT VIAAREDNKNDPRIARFIKAYQSEEVKQFVARQFPGAYSTSW" FT misc_feature 408208..408276 FT /note="Signal peptide predicted for BB0395 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 23 and 24" FT misc_feature 408286..408996 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03180, DE NLPA lipoprotein, score FT 4.1e-107" FT CDS complement(409042..409566) FT /transl_table=11 FT /locus_tag="BB0396" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3433" FT /protein_id="CAE30894.1" FT /translation="MPEASHPDHLIRAGRLQADDARLFTPEADGPADQTPPDEPGWLVT FT LATWKAAAATLRARRHPVGVQLPPDARLDELTGPDGELDRAALSFIAIEFPVYTDGRGY FT SLAQLLRRRYGWDGELRAVGDVMIDTIHYQARVGFDSFLVKPGHDPQRALAAFRTFSVH FT YQHTYPAPLAA" FT CDS complement(409559..411301) FT /transl_table=11 FT /gene="cysI" FT /locus_tag="BB0397" FT /product="putative sulfite reductase" FT /EC_number="1.8.7.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3432" FT /protein_id="CAE30895.1" FT /translation="MYVYDPVDQQLVEERVEQFSDQTRRFLDGQLTEDEFRTLRLQNGL FT YIQRHAPMLRIAIPYGMLAARQLRKLAHIARTWDRGYGHFSTRQNMQFNWPRLEDVPAI FT LAELASVQMHSIQTSGNCIRNTTSDHFAGVAPDELVNPLVWCEIIRQWSTLHPEFAFLP FT RKFKIAVSGAVEDRAAVGVHDIGLQAVERDGQLGFRFWVGGGLGRTPMVGHLINPFVPW FT QHLLTYLQAALRVYNLHGRRDNKFKARIKILVKDLTPEVYAHEVEQEWQSLKDGPDTIT FT EDQLNTIAGRFVWPDYDSAAASEPDPTDARAQADPRFARWLRTNVRAHKVAGYAAVTVS FT LKATGVPPGDITADQMDAVADLSERYGFGELRVSHEQNLVLADVRRARLHDLWQELQQL FT NLATPNIGLLTNIIACPGGDFCALANAVSIPVAESIQRRFDDLDYLFEIGELDLNISGC FT INSCGHHHVGHIGILGVDKAGEEWYQVTLGGRQNGAAKPLPDLESPRGGGAAIGRIIGP FT SFARTQIPDVIDRLIRTYLELRDSDAERFIDVVDRVGIDPFKRDVYADPAVAKPASQQE FT PAHA" FT misc_feature complement(409871..410074) FT /note="HMMPfam hit to PF01077, DE Nitrite and sulphite FT reductase 4Fe-4S domain, score 1.2e-14" FT misc_feature complement(410105..410329) FT /note="HMMPfam hit to PF03460, DE Nitrite/Sulfite reductase FT ferredoxin-like half domain, score 3.1e-15" FT misc_feature complement(410969..411172) FT /note="HMMPfam hit to PF03460, DE Nitrite/Sulfite reductase FT ferredoxin-like half domain, score 2e-20" FT CDS 411642..412187 FT /transl_table=11 FT /locus_tag="BB0398" FT /product="conserved hypothetical protein" FT /protein_id="CAE30896.1" FT /translation="MPRRARIVLQGHPHHVVQRAHRRQQIFTDEADCLPYLNDLQRERR FT RLQVAVYAWCLMPNHVHLLLAPLHDCRALSQIMGKLAGGAGRRFNHRHGLSGTLWESRY FT YSSVIGTEEYFWECCRYIELNPVRAGIVDRPEQYPWSSYRARMLDQGGVDAPPGYDATS FT PHGRLDLAAYARFVQEGM" FT CDS complement(412336..413094) FT /transl_table=11 FT /locus_tag="BB0399" FT /product="putative branched-chain amino acid transport FT ATP-binding ABC transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP3431" FT /protein_id="CAE30897.1" FT /translation="MPTSAAATEPVFALDNVTVAYHGDITILNGVSVQARAGQVTGIIG FT PNGAGKSTVLKTLFGFLPLRGGRIMLRGQDISRQPSHERAASGVAFVPQHRSLFGELSV FT EDNLVLGCWPFRRDKDKVRRRIDSVYQRFPILAQKRHDPVSSMSGGQQRFVEFGRALLI FT EPSVILLDEPTAMLAPKISKEIYALVRGFADEGMTVILVDQNVRRCAEISDYMYILELG FT RNKAEGAHEQFGHDGGLRDMVASWMDYKID" FT misc_feature complement(412429..412983) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 3.1e-49" FT misc_feature complement(412939..412962) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(413097..413804) FT /transl_table=11 FT /locus_tag="BB0400" FT /product="putative branched-chain amino acid transport FT ATP-binding ABC transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP3430" FT /protein_id="CAE30898.1" FT /translation="MLKVSNLQKRFGGLVALRGVDLHVPRAAILGIIGMNGSGKTTMLN FT CINGLYVPDAGSIELDGAEIAGKQVHEVARLGVGRTFQVPRVFQHLSLLDNLDVAQQQT FT GRSADERYAQSEYWLHKVELHRLRHNHAEELSGGQQKLLELARIMVAQPKVILLDEPFA FT GVNPALAQLLIAIIRDVPTEHGCSVVLVSHDLTSIYQLSHHIIVMNEGAILCEGDADRV FT RTDPRVIEAYLGA" FT misc_feature complement(413172..413726) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2e-52" FT misc_feature complement(413358..413402) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(413682..413705) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(413821..414702) FT /transl_table=11 FT /locus_tag="BB0401" FT /product="putative branched-chain amino acid transport FT permease" FT /note="ortholog of Bordetella pertussis (BX470248) BP3429" FT /protein_id="CAE30899.1" FT /translation="MSGLIIQGLVNGLILGAIYGLIGVGLNVIFGVLRVVNFAHGEFLV FT LGAYFAYYLLEYAGIGPLLALPLAFGAFFLAGYVLYFVLIPRLSKADDPEISSLLLMFG FT VSIMLGAIMLLAFEADARSLPYEIEPVFFKIGPVLIPTVRLIALAIALAVVAVLAWFLY FT RTQMGKALRAIIMNRDAVRIVGINAERLSAVAFGLGIGLAAVTGVLVAMVFPAFSPFMG FT NDYTLIGFIVIVLGGLGHPVGALVGAMLFGVTEQVSVVFFNPSIATICGFVLMVAMIFV FT RPTGLFGHRALR" FT misc_feature complement(413830..414690) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 2.1e-26" FT misc_feature complement(join(413860..413928,413947..414015, FT 414058..414126,414217..414285,414352..414411, FT 414448..414516,414544..414612,414625..414693)) FT /note="8 probable transmembrane helices predicted for FT BB0401 by TMHMM2.0 at aa 4-26, 31-53, 63-85, 98-117, FT 140-162, 193-215, 230-252 and 259-281" FT CDS complement(414713..415702) FT /transl_table=11 FT /locus_tag="BB0402" FT /product="putative branched-chain amino acid transport FT permease" FT /note="ortholog of Bordetella pertussis (BX470248) BP3428" FT /protein_id="CAE30900.1" FT /translation="MSSSLAASAHASHRLQDQQAQRTRTRIATGIFAVLTLSLAVVPMA FT TSNISFAFYLMLWVTMASAMNICVGFTGYLPFGFVVFYGVGAYATGICYKVLGWPILPS FT LAAASVVGLLIALLFAPTLRLRGVYFGIVSLALATIMRLLISNLPDGFTGGSMGLILSS FT ANSPTHSYYAMLAVMAATLATVAWLSVSRLGKALKAIRDDDAAAACVGIHVPRTRLKAW FT LLAALFPALAGGIEAWYTNVVDPEYAFHVLITAKSIIYAMAGGFGTIIGPVVGTLALLG FT IDHLIWQKFPVLNLLLLGLVIVLLMLFLPRGIVGSLLKRYPQLRQYIA" FT misc_feature complement(414749..415567) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 2.5e-06" FT misc_feature complement(join(414761..414829,414863..414931, FT 414974..415042,415130..415198,415256..415324, FT 415343..415411,415439..415507,415544..415612)) FT /note="8 probable transmembrane helices predicted for FT BB0402 by TMHMM2.0 at aa 31-53, 66-88, 98-120, 127-149, FT 169-191, 221-243, 258-280 and 292-314" FT CDS complement(415805..416722) FT /transl_table=11 FT /locus_tag="BB0403" FT /product="putative LysR-family transcriptional regulator" FT /protein_id="CAE30901.1" FT /translation="MHALNKLSYRQTEMLWAIVTAGSISGAARLLNISQPAVSRMLAQT FT EKQLGLNLFERVRGRLQPTPEVRILFEEIEKTQRMMQRVNDLADALAGHGAGVLRLTSI FT PSLAQYLVPRAVARFQRTHADILLRLNATALPHLINDVLHGEAELGLVVMQADHPFLTS FT LPLHTGRMVAAIPRSHPLAERGQVTLADLSPHPHIVVGTRMPYGMLVQSAFEQAGLPCR FT MCADVPWSQLACALVNAGAGIAIVDEFTVMQNIWPEIAIVPLAEDIPLHISAVHANNRP FT LSRIAAEFIPHLRDVLTESFSKAD" FT misc_feature complement(415829..416449) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 8.8e-37" FT misc_feature complement(416519..416698) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4e-16" FT misc_feature complement(416594..416659) FT /note="Predicted helix-turn-helix motif with score FT 1869.000, SD 5.55 at aa 22-43, sequence FT GSISGAARLLNISQPAVSRMLA" FT CDS 416844..418076 FT /transl_table=11 FT /locus_tag="BB0404" FT /product="putative branched-chain amino acid binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3427" FT /protein_id="CAE30902.1" FT /translation="MSRKSWLFRLPALAIAAAALAPATGAAQASDKIRIGMTVSSTGSF FT ALASQSGVRGVEVWVDDVNRRGGIEIKGKKYPVELVKLDDRSDKQMVTRVYERLIVDEK FT VDLVFAPFGSTLTAAAGTVTERLGKYMMVWSAASDDLYKQGFKYMVSGTQMPVSAMLRA FT PMALAGKLGVKKAAILYSDEPFPAGLADGGRAQAAKNGIDVVLYEKYPKGQKDFSTLLQ FT KAKAAGADALVPTSYEGDLISMTRQMKQLDINFPYTFMVYASTPQFQAIGADSNYIFSH FT TNYHPAINWKVNAGLTREQFAKAYDTLFPKAEFPPDFQTALAYGAGALTEEIIKKAGAT FT DAAALKQASMDLSDKVTVMAGPYAIDETGKQLQMPFPVVQLLPGKGMVPVYPEDVAVEK FT AVYPAPAWNKR" FT misc_feature 416844..416930 FT /note="Signal peptide predicted for BB0404 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.911 between residues 29 and 30" FT misc_feature 416856..416924 FT /note="1 probable transmembrane helix predicted for BB0404 FT by TMHMM2.0 at aa 5-27" FT CDS 418146..419564 FT /transl_table=11 FT /locus_tag="BB0405" FT /product="putative amidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3426" FT /protein_id="CAE30903.1" FT /translation="MSELAFSSLAELARGLEAGRYSAVELARHYLARIARANEALHAYV FT SVDEAGALRLAQAADARRAAGYALGPLDGLPIAIKDLCEIEGQVTTAGSAAWRERRSKV FT TGTAVRRLLAAGMVVLGKTHMVEFAFGGWGTNPVMGTPRNPWDLSHPRIPGGSSSGSGV FT AVAAGLAPAALGSDTGGSVRIPAALNGITGLKTSAGLISLHGAVPLSQTLDSIGPMTRD FT AYDAMLLVQALAGPDAADPATLGVPAFVYAPPREGGRPLAGRRIAVMAEENYPLAVSAD FT ASLAVRQAADTLRALGAEVATVATPFDFTRLMHANGRIIAAEAYALHRGYIDDAALPLG FT EFVRARVQSGRAIGAADYIAAMREHAQARAQWRAWMQDYDALLTPSLPFAACRLDEVDE FT QGTPLAAFSRAGNFLGASGLALPAGFSADGLPVGVQLMGKPFDDGLLCGLGVAFQQATD FT WHLRTPDLRAAGLA" FT misc_feature 418218..419486 FT /note="HMMPfam hit to PF01425, DE Amidase, score 1.3e-117" FT misc_feature 418491..418514 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 418608..418703 FT /note="PS00571 Amidases signature." FT CDS complement(419586..420236) FT /transl_table=11 FT /locus_tag="BB0406" FT /product="putative carbonic anhydrase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3425" FT /protein_id="CAE30904.1" FT /translation="MFPKRLTDGYHAFLQGRFHSERSRYEALAEKGQKPEILLIGCCDS FT RVSPEVIFDAGPGEIFVVRNVANLVPPCEPDAESSFHGTSAAIEFAVNGLNVKHIVVLG FT HASCGGIRSFYDDGEPLSKMDFIGKWMSQISPVADRLGPSTGDRATDIKRLELAVVEES FT LRNLMTFPSISSRVERGELELHGTYFGVATGLLYVLDRATGQFAPWLEEDAAA" FT misc_feature complement(419655..420200) FT /note="HMMPfam hit to PF00484, DE Carbonic anhydrase, score FT 1.2e-39" FT CDS complement(420370..420714) FT /transl_table=11 FT /locus_tag="BB0407" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3424" FT /protein_id="CAE30905.1" FT /translation="MMKTRLASLAAALLLAATGALAQSLPYGVTLGNLQATRDAAAGVS FT TITGSLSNQGAKRIGRAWVVFALYDSQGREIGRVKEQSIGPIAPGEIWQIRSTTPQPFE FT RFSAIEIKAE" FT misc_feature complement(420649..420714) FT /note="Signal peptide predicted for BB0407 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 22 and 23" FT CDS 420954..421277 FT /transl_table=11 FT /gene="psiF" FT /locus_tag="BB0408" FT /product="phosphate starvation-inducible protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0227" FT /protein_id="CAE30906.1" FT /translation="MISRVSKFAACTLVSLFCSTAAWAQASASKELTPQQKRMAECNKS FT ATGKTGDERKAYMSSCLKGEEPANKLTPQQQRMKDCNSRASEQALTGEKRKAYMSTCLS FT GKS" FT misc_feature 420954..421025 FT /note="Signal peptide predicted for BB0408 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.992 between residues 24 and 25" FT CDS complement(421395..422444) FT /transl_table=11 FT /locus_tag="BB0409" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0226" FT /protein_id="CAE30907.1" FT /translation="MNGMQRWKQRPPGSNWGDFGPDDQLGRLNLITPAEVLKAAQEIRA FT GRSFCLSLPLDLPGGNVLNPRRHPPQLSPTRLQDTPYVNFPLRNLNPDAVDVLSDDQVL FT LSMQYSTQWDSLAHVGALFDADGDGRAELCYYNGYRAGIDIVGPADADHAGCGCNTGGP FT SAALKLGIENLAQHSVQGRGVLLDLARHYGAGRTLVGYKELTQALAADGIEIESGDMLV FT LRTGYAEAVVGMNGKPDADVLHQYGAALDGTDAELLQWITDSGIAAICADNYAVEAYPA FT RERQGPRAMLPLHHHCLFKLGLPLAELWYLKDLAEWLHANGRHRFMLTAPPLRLPHAIG FT SPVTPVATV" FT CDS complement(422441..423265) FT /transl_table=11 FT /gene="catD2" FT /locus_tag="BB0410" FT /product="3-oxoadipate enol-lactone hydrolase" FT /EC_number="3.1.1.24" FT /note="ortholog of Bordetella pertussis (BX470248) BP0225" FT /protein_id="CAE30908.1" FT /translation="MSACPGRAGPASGITMSYADLSQARLYYAIDGPADAPVLVLSNSL FT GTCADMWARQIPELSRRFRVLRYDTRGHGKSSVPDGEYSFAQLGGDVAELLEHLRIERA FT HFCGLSMGGPTGMWLALERPELIDRLVLCNTAARIGSAEGWSARIAAVRQDGLETMAPG FT LVERWLTPQYRAAEPGLVQLLVDMLRRIPDAGYMANCAALRDADLRERVAAIRARTLVI FT SSTHDLAATPQDGKALAAAIPGARYVELDTSHISNWEQPEAFTRALTGFLTE" FT misc_feature complement(422450..423079) FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 1e-24" FT CDS complement(423266..423562) FT /transl_table=11 FT /locus_tag="BB0411" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0224" FT /protein_id="CAE30909.1" FT /translation="MPYIIETFDKPGSLAVRQQHRNAHLQFLDQHKHLLLACGAKLDDD FT GKDLGGGLYVVDVDTRAAAEQFIQADPFHLAGLFERVAITRWRKAYVDGTSYL" FT misc_feature complement(423290..423538) FT /note="HMMPfam hit to PF03795, DE YCII-related domain, FT score 7.4e-31" FT CDS complement(423588..423863) FT /transl_table=11 FT /gene="catC2" FT /gene_synonym="mmlJ" FT /locus_tag="BB0412" FT /product="methylmuconolactone isomerase" FT /EC_number="5.3.3.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0223" FT /protein_id="CAE30910.1" FT /translation="MLFMVQMQVNLPPDMPAERADKLKADEKALAQQMQRDGKWRHLWR FT VAGRYANVSIFDAADNDELHQMLSALPLFPYMDIQVTALARHPSAI" FT misc_feature complement(423594..423863) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02426, DE Muconolactone FT delta-isomerase, score 1.6e-60" FT CDS complement(423920..424564) FT /transl_table=11 FT /gene="catJ" FT /gene_synonym="pcaJ" FT /locus_tag="BB0413" FT /product="3-oxoadipate CoA-transferase subunit B" FT /EC_number="2.8.3.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0222" FT /protein_id="CAE30911.1" FT /translation="MSSKLTRDEIAARVAQDIPEGAYVNLGIGLPTLVANHLPADREVI FT LHTENGMLGMGPAPAKGQEDYDLINAGKQPVTELPGCSFFHHADSFAMMRGGHLDICVL FT GAFQVSQQGDLANWHTGAPDAIPAVGGAMDLAIGAKDVFVMMELQTRDGQSKLVQACTY FT PLTGVRCVSRVYTDMAVFDLRAGQITVTDLFGGTTREQLLALTGLPLKFAD" FT misc_feature complement(423947..424549) FT /note="HMMPfam hit to PF01144, DE Coenzyme A transferase, FT score 1.1e-50" FT CDS complement(424564..425184) FT /transl_table=11 FT /gene="catI" FT /gene_synonym="pcaI" FT /locus_tag="BB0414" FT /product="3-oxoadipate CoA-transferase subunit A" FT /EC_number="2.8.3.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0221" FT /protein_id="CAE30912.1" FT /translation="MIGGFGTAGQPMELIDALLEQGAKDLVIINNNAGNGTTGLAALLG FT AGRVRKIICSFPRQVDSQIFDGLYRAGKLELELVPQGNLAERIRAAGAGIGAFFTPTGY FT GTPLADGKETREINGRQYVLEYPLHADYALIQAERGDRWGNLVYRKTARNFGPIMASAA FT RVAVAQVRQVVELGQLDPEAVVTPGIFVKRVVQIDAPRGAKEQ" FT misc_feature complement(424591..425184) FT /note="HMMPfam hit to PF01144, DE Coenzyme A transferase, FT score 3.6e-79" FT CDS 425380..426231 FT /transl_table=11 FT /locus_tag="BB0415" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0220" FT /protein_id="CAE30913.1" FT /translation="MASRLYNGARSERLHFHLLHTGPMVEQVPQQPGDSYVQSFARGLS FT VIRAFGPQRPQMTLSEVAAATGLTRAGARRILLTLASLGYVAQEDRRFTLTPRILELGY FT AYLSATPLWDLALPYMEEVAETTRESCSVSVLDGVDIVYILRLSTHKVMTINLAVGSRL FT PAWVTSMGRVLLAGLPEAEQDRLLDESQIQPYTPATVVDRAELKRILAGVRADGYACVV FT QELEPGLQSVAVPIVDRGGRVIGAMNVSGHANRYSREEMLQAFLPPLRSAAEHINQALR FT RR" FT misc_feature 425548..425613 FT /note="Predicted helix-turn-helix motif with score FT 1256.000, SD 3.46 at aa 57-78, sequence FT MTLSEVAAATGLTRAGARRILL" FT misc_feature 425656..426216 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 1.2e-64" FT CDS complement(426282..427007) FT /transl_table=11 FT /locus_tag="BB0416" FT /product="probable short-chain dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0219" FT /protein_id="CAE30914.1" FT /translation="MKPTAYLVTGASSGIGAAIARALLDAGHRVVNIDYRLPADAPQGL FT ASYQADLTDEAQTLAVAREVTEAYDIVGLVNNAGATRPGTADTATLADLDYVVALHLRT FT AMILVQAALPAMRAAGYGRIVNMSSRAALGKPERVVYSATKAGLIGLTRTLAMELGGDG FT ITVNAIGPGPIATELFRNSNPEGAPRTQRIIDSIVVKRLGTPEDVARAAMFFLSPDNGF FT VTGQVLYVCGGTTLGVAPV" FT misc_feature complement(426306..427004) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 1.3e-59" FT misc_feature complement(426540..426626) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT misc_feature complement(426948..427007) FT /note="Signal peptide predicted for BB0416 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.899) with cleavage site FT probability 0.649 between residues 20 and 21" FT CDS complement(427040..428473) FT /transl_table=11 FT /locus_tag="BB0417" FT /product="short-chain fatty acids transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0218" FT /protein_id="CAE30915.1" FT /translation="MPPVFRGLSPRGQAPHTTQTQRLTKKYVGSTMNKLTSFFTELMRK FT YLPDPFVFAIALTLLTVLMAFGIEGQPLDQITREWGKGFWSLLAFTTQMAVILAMGYVL FT ATAPLTDRLLDRIVSHVHQPRTAIIVATLVGGVGSYLNWGFGLVIGGVVAKKLALKVKG FT VHYPLIIAAAYSGFTMYGLGLSASIPVLVATPGHPTADQMGVIPLSETIFSLPMLITSL FT VIIVTLPLLNAWLHPKQGEKVVEVDPAIDQGSAPAKAADELTAEDTLASRLNNSRILSL FT LIGLLGIAYVVFYFMDGKSLDLNLINFIILFLGIILLGTPAAYVAKLNEGIKTISGIIL FT QYPFYAGIMAIMAGSGLVATISKVFVDVASPGSLPFWGLISSFVINFFAPSAGGHWVIQ FT GPFMIDAAKEIGSALNQTTMAVMLGNAWNDLVQPFWILPALALSKLKLRDVMGYTVIMM FT LWVGVIHIAAVLAWGYLTH" FT misc_feature complement(join(427049..427117,427280..427348, FT 427391..427459,427496..427561,427589..427642, FT 427772..427840,427898..427966,428027..428095, FT 428159..428227,428264..428323)) FT /note="10 probable transmembrane helices predicted for FT BB0417 by TMHMM2.0 at aa 51-70, 83-105, 127-149, 170-192, FT 212-234, 278-295, 305-326, 339-361, 376-398 and 453-475" FT misc_feature complement(427058..428383) FT /note="HMMPfam hit to PF02667, DE Short chain fatty acid FT transporter, score 6.8e-131" FT CDS complement(428493..429425) FT /transl_table=11 FT /locus_tag="BB0418" FT /product="3-hydroxybutyryl-CoA dehydrogenase" FT /EC_number="1.1.1.157" FT /note="ortholog of Bordetella pertussis (BX470248) BP0217" FT /protein_id="CAE30916.1" FT /translation="MDNPIQNLAVVGAGAMGSGIAALFASKGFDVVLIDPMEGALTRAA FT QVIERQLGVYAPDAIAPAMQRIRMDAGLEAACSAQLVIEAVPEKLALKRDIFARLDTLC FT DPQAIFATNTSGLSINDIAQAVTRRDRFVGTHFFTPADVIPLVEVVRNDDTSEQTVARV FT MGMLRAGGKRPVLVRKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIR FT LALSGPLEQRDMNGIDVHYAIASYLYQDLENRTTPSELLENKVQAGELGAKSGQGFYAW FT PPERRERVLRDKSAALAELAAWLESRKPV" FT misc_feature complement(428583..428879) FT /note="HMMPfam hit to PF00725, DE 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain, score 1.7e-29" FT misc_feature complement(428883..429422) FT /note="HMMPfam hit to PF02737, DE 3-hydroxyacyl-CoA FT dehydrogenase, NAD binding domain, score 3.1e-61" FT misc_feature complement(429348..429407) FT /note="1 probable transmembrane helix predicted for BB0418 FT by TMHMM2.0 at aa 7-26" FT misc_feature complement(429351..429425) FT /note="Signal peptide predicted for BB0418 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.659) with cleavage site FT probability 0.330 between residues 25 and 26" FT CDS complement(429824..432619) FT /transl_table=11 FT /gene="sphB1" FT /locus_tag="BB0419" FT /product="autotransporter subtilisin-like protease" FT /note="ortholog of Bordetella pertussis (BX470248) BP0216" FT /protein_id="CAE30917.1" FT /translation="MPPPAVPPQLPEVPAADLPRVRAPLSTYRRPQRTDFVTPAGGPFI FT AKQDKALNTIDLKMAHDQKLRGYRVKVAVVDEGVRSDHPLLNVEKKYGGDYMADGTRTY FT PDPKRQGRHGTSVALVLAGQNTDTYRGGVAPNADLYSANIGTRAGHVSDEAAFHAWSDL FT LGHGIKIFNNSFATEGPEGEQRVKEDRNEYQRAANKQNTYIGRLDRLVRDGALLIFAAG FT NGRPSGRAYSEVGSVGRTPRVEPHLQRGLIVVTAVDENGRLETWANRCGQAQQWCLAAP FT STAYLPGLDKNNPDSIHVEQGTSLSAPLVTGAAVLVQDRFRWMDNDNLRTTLLTTAQDK FT GPYGVDPQYGWGVLDVGRAVQGPAQFAFGDFVARVTDTSTFGNDISGAGGLVVDGPGAL FT VLAGANTYAGRTTIKRGTLDVFGSVTSAVTVEPGGTLTGIGTVGTVTNQGTVVNKEAGL FT HVKGDYSQTAQGLLVTDIGSLLDVSGRASLAGRLHVDDIRPGYVGGDGKSVPVIKAGAV FT SGVFATLTRSPGLLLNARLDYQPQAVYLTMRRAERVHAVAQRAADDGRRASVLAVAERL FT DAAMRELDALPESQRDAAAPAAAIGRIQRVQSRKVLQDNLYSLAGATYANAAAVNTLEQ FT NRWMDRLENHLAQTGGERVAAIAEYRHGQLRWRPDGLQGRQRGNGIMLGLAREVSAGLS FT LAAALTHSRTHWDESSGAPARDNAAMTTPGVLLGARRAWDDGWFVQGALGYSRYRNQAT FT RHISLGDAGHTVGATARGHVWQADAGLGRQWTLAPGHTLAPRAGLQLTHLRQQGFSESG FT AQGLGLRARALTRTVPTLWAQLQSRHAFMLGATPMTAQLQLGVWHDLRARRYAASGGFA FT GLAQDQGASGYWPVPRTRVQGALGLRAEFAPGLALGLGYTGQLATHWVDHQLSASLTYR FT Y" FT misc_feature complement(429830..430705) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03797, DE Autotransporter FT beta-domain, score 0.00029" FT misc_feature complement(430541..430597) FT /note="PS00095 C-5 cytosine-specific DNA methylases FT C-terminal signature." FT misc_feature complement(431537..432490) FT /note="HMMPfam hit to PF00082, DE Subtilase family, score FT 2.3e-10" FT misc_feature complement(431684..431716) FT /note="PS00138 Serine proteases, subtilase family, serine FT active site." FT CDS complement(433213..436161) FT /transl_table=11 FT /gene="ppc" FT /locus_tag="BB0420" FT /product="phosphoenolpyruvate carboxylase" FT /EC_number="4.1.1.31" FT /note="ortholog of Bordetella pertussis (BX470248) BP0215" FT /protein_id="CAE30918.1" FT /translation="MAAYNAPVSNCQFRLTHILPIPQRQGAPTDPFQMNAIRQQSDSAE FT PLRHDIRLLGRCLGEVIQACEGKRVYDTIETLRRTAVRFRRAGDPADDKLLQARVKQLR FT GNDPNSVARAFSYFLHLSNIAEDRDQNRRQRDRALAGAGPERGSLRQAIESLKAQGVNN FT ARIRRLLSEACVMPVLTAHPTEVQRKSTLDVHREISSLLVQRERELTADELSELDLALI FT GQVATLWQTRMLRYTRLTVADEIENALSYYRSTFLNVIPRVYGDLARLLNREPVKPFTP FT PPPPLEPFLRMGSWIGGDRDGNPNVDAATLERALLRQATVLFEHYLQEVHALGAELSAS FT TLLIEADPALLALADAGGDDSPHRRDEPYRRALIGIYARLAATARHLTGQELARRATVP FT AAPYDTPDALAADLAVIAASLSAHHGAPIARLRLSGLQQAVTVFGFHLATVDLRQSSDV FT HERVLAELFARAGDGIDGQAVDYLALDEAARVAVLRRELAHARPLASPWIAYSEETASE FT LAVLRAAAAGRARYGRQAVLQSIVSHTETLSDLLEVLVLQKEAGLIAPPGETIAPGDGL FT MVVPLFETIPDLQRGPEIMAAWLDLPEVRQRVRLAQGDTQEVMLGYSDSNKDGGFLTSN FT WSLYQAERALVDVFSARSVRLRMFHGRGGSVGRGGGSSYDAILAQPPGTVAGQLRLTEQ FT GEVIQSKYKDAEVGRWHLELLVAATLESSLAPQAAATSAEDAHMQQHAPAMSFMSELAQ FT RTYRGLVYDTPGFADYFFAATPISEIAGLNIGSRPASRKKGQHIEDLRAIPWGFSWAQC FT RLMLTGWYGMGSAIEAYLETGAQGAPRSRRARLAQLREMASDWPAFRTLLSNMEMVLAK FT SDLAIAAGYAQLVPRRGLRERVFGAITAEHGRTLAMLRLLTRRELLADNPGLMASLRER FT FAYIDPLNYLQIELIKRHRAAQRRAGDDADIRVPRAIHLTINGIAAGLRNSG" FT misc_feature complement(433219..436065) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00311, DE Phosphoenolpyruvate FT carboxylase, score 2.7e-63" FT misc_feature complement(434272..434310) FT /note="PS00393 Phosphoenolpyruvate carboxylase active site FT 2." FT misc_feature complement(435595..435630) FT /note="PS00781 Phosphoenolpyruvate carboxylase active site FT 1." FT CDS 436218..436952 FT /transl_table=11 FT /locus_tag="BB0421" FT /product="Conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0214" FT /protein_id="CAE30919.1" FT /translation="MFRCLMQNHQRRALVLFSGGQDSTTCLAWALERYAHVETLGFDYG FT QRHRVELDARQVVLRELRANFPDWAQRLGDDHLLDLGILAQVGDTAMTSDREIEMQANG FT LPNTFVPGRNLLFLTLAAALGYRRQLDVLVGGMCETDFSGYPDCRDDTIKSQQVTLGLG FT LGTRVTIETPLMWLDKAQTWELADRLGGQALVDMVIEHSHTCYLGERGQRHDWGYGCGH FT CPACALRKNGWERWVAGAAHAD" FT CDS complement(436991..437539) FT /transl_table=11 FT /locus_tag="BB0422" FT /product="putative acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0213" FT /protein_id="CAE30920.1" FT /translation="MTASMPTAILIRDSRDADLPAIAAIYAHHVLHGTASFELEPPGLE FT ALRERRAAVLAHGLPYLAAECGGEIVGYAYATPYRPRPAYRHTVEDSVYVRAGHAGQGI FT GGKLLAALIERCAAGGWRQMLAVVGDSANTASVALHARHGFDTIGTFRSVGYKHGQWRD FT TVLMQRALGEGDATPPGRP" FT misc_feature complement(437102..437356) FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 7.1e-15" FT CDS 437694..438593 FT /transl_table=11 FT /locus_tag="BB0423" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0212" FT /protein_id="CAE30921.1" FT /translation="MNQVEMTEFPVGKPQEALYGVASTPDGALWFTLAKGNAIGRLSPD FT GAVSRFPLPHADGQPTTITCGPDGRPWFTLSSANAIGRLAPDGALRMFELPRPASRPFG FT IAGGHDGCLWFAEMAGDRIGRITIDGDIEEYDLPVKGGYPSCMAAGRDGLMWFTLNQAG FT AVGSISATAAPRIFPLGAADAAPVGIASDAQGALWIAQAGNGAIARFDAGGRITEFPLH FT SRAARPHAIAADAAGNLWFTEWGANRIGRISEAGDLAGYELAAPGSEPHGIAIDPHGCV FT WAALETGRLVRLQASPRD" FT CDS complement(438618..439244) FT /transl_table=11 FT /locus_tag="BB0424" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0282" FT /protein_id="CAE30922.1" FT /translation="MYTPPAYEERDRHKLHAWMRDWSFATLVTHGDQGLQATHLPFLLD FT PLRGPHGTLISHLARRNPQAADIQAGAQAMVVFQGPHAFISPSWYRNRQTFPTWNYAAI FT HAHGQAAAIEDAQRIRAILTRTVQTYDTPLGGEWTFEAMPEDLIVPRLSAIIALEIPIA FT RLEGKVKLNQDKSPEDRAGVLAALENRRDPGSRGVARMMREALLA" FT CDS complement(439267..440193) FT /transl_table=11 FT /locus_tag="BB0425" FT /product="putative 2-hydroxyacid dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0283" FT /protein_id="CAE30923.1" FT /translation="MTLIAIASQAPDLLRLPPALRALDPSIDVVVWPDPRCAAAEVAVC FT WAPPPGALAAMPALRLLHTVSAGVDNVLAAPGLPDVPLCRVVDAELNLGMAQYILWGAL FT YFSRGFDQARASQAAGQWRRPDRYGQPPLRVGLMGLGAIGMAALPLLRAAGLPVTGWSR FT TAKRIDGVATHHGPDGLAPFLAASDILVNLLPLTESTRGLLCAATFAGLPPGAALIHCG FT RGAHLVEADLQAALADGRLRGALVDVYAQEPLPPQHPLWRCPSLVITPHMASVAPFERV FT AGQILENLRRLNAGEALMNLVDPRRGY" FT misc_feature complement(439381..439908) FT /note="HMMPfam hit to PF02826, DE D-isomer specific FT 2-hydroxyacid dehydrogenase, NAD binding domain, score FT 2e-11" FT CDS complement(440202..441788) FT /transl_table=11 FT /locus_tag="BB0426" FT /product="probable extracellular solute-binding protein, FT family 5" FT /note="ortholog of Bordetella pertussis (BX470248) BP0284" FT /protein_id="CAE30924.1" FT /translation="MNYRHIRGTLRALLLASAAIATLAGAPAQAQTRGGTLRAIVHPEP FT PILITAINSQSPTQFVGGKIFQGLLTYDADLKPQPSLARAWRISPDGLVYTFELQPDVK FT WHDGKPFTADDVVFSIDKLVREVHPRTKLILNAYVESVRAVDPATVEIRLKEPFAPFIS FT MFETGTMPMMPKHLYEGTDYRNNPANQHPVGTGPFKFKEWVRGSHIALVRNDEYWKPGL FT PYLDGIRFQVIPDSASRAVAFEQANVDLVYGDDVDSVDIKRLRALPGVQYTTKGWEMFG FT PMGLMVLNQREAPFDNVLVRRAVMHALNRDFIVKNIFFGMGRVPTGPFSSATLFHDKDL FT PVYDYNIKKARALIKESGVDVGQRTLRLLAFPYGANWERVGEYTRQTLEQLGFKVDIQA FT TDAGGWASRMSQWDFDISFNHPYQYGDPVLGVQRLYLSSNRVKGTPFGNNQGYHNPKAD FT ALWQQAARSVDPAERQKLYSELQRILVDDAALGWLLEIDYPTLYRGNVHNLVTSAIGVK FT ESFDTVYLDAR" FT misc_feature complement(440214..441758) FT /note="HMMPfam hit to PF00496, DE Bacterial extracellular FT solute-binding proteins, family 5, score 1.1e-61" FT misc_feature complement(441699..441788) FT /note="Signal peptide predicted for BB0426 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 30 and 31" FT CDS complement(441785..442825) FT /transl_table=11 FT /locus_tag="BB0427" FT /product="putative acetyl esterase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0285" FT /protein_id="CAE30925.1" FT /translation="MSASLTADRTPPLTTAALPYPLDPQIQRFVERMQADSAAHPRRDL FT VPVEQARAISEAVRRPWAEGGPQMARTREIHAPTPHGPVRLRVYTPRAARPGPALLYVH FT GGGWVLFSLDTHDRLMREYAERAGLTVIGVDYTRAPEARYPRAIEEIVGVIDWLDANGA FT ELEVDRARLCIGGDSAGANLSVAACLTLRERGAAPLAGMVLNYGVYDANLFRDSTVKYG FT GGEYLLSTQQMVWFYWNYLRAGDDPRDPRISPVHADLRGLPPAFMAITELDLLHDANQD FT MAARLREAGVDVQAKVYPGTVHSFLEAVSLAQVSVAAFDDTAAWLRAVLRPAAAAAAIH FT TGEHQP" FT CDS 442990..443850 FT /transl_table=11 FT /locus_tag="BB0428" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0286" FT /protein_id="CAE30926.1" FT /translation="MPAIAKDPSPRRAPAFPAPRQLSYLDLLTRQVQSAPGEMAALATD FT YPAGTVSSLHRHDRGQLLYAMSGVVTVITDLGSWVVAPGQALWIAPGVLHQTRGFESVA FT IRSLYIDPAHADGLPAACQTIQVSPLLQALILEAVKLPPQDAGSERAGHIRALILDEMR FT HVCAAPLYVPMPRDARLARICQALLRDPANAGSLDAWAAYGGLSRRNLTRLFRAQTGAS FT FNAWRQKVLLMEALARLSRGEQITAVALDLGYGSPGAFTAMFRRALGVSPREYFRWTEA FT PQRAD" FT misc_feature 443536..443673 FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.041" FT misc_feature 443572..443637 FT /note="Predicted helix-turn-helix motif with score FT 1165.000, SD 3.15 at aa 195-216, sequence FT GSLDAWAAYGGLSRRNLTRLFR" FT CDS complement(443882..444883) FT /transl_table=11 FT /gene="leuA" FT /locus_tag="BB0429" FT /product="2-isopropylmalate synthase" FT /EC_number="2.3.3.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP0287" FT /protein_id="CAE30927.1" FT /translation="MLAHPATKYRPFAPFAADHAERAWPARRPAAAPIWMSTDLRDGNQ FT ALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEAL FT TQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRAL FT ADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTAN FT VYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGERTG FT NVDLVALALNLERQGIASGLDFRDMAALRACVSECNQLPIDVFHPYAWLDQD" FT misc_feature complement(443915..444769) FT /note="HMMPfam hit to PF00682, DE HMGL-like, score 2.5e-83" FT misc_feature complement(444116..444157) FT /note="PS00816 Alpha-isopropylmalate and homocitrate FT synthases signature 2." FT misc_feature complement(444716..444766) FT /note="PS00815 Alpha-isopropylmalate and homocitrate FT synthases signature 1." FT CDS 444954..445763 FT /transl_table=11 FT /locus_tag="BB0430" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0288" FT /protein_id="CAE30928.1" FT /translation="MNPLEKDIAESKPQLAPHEHASAPVTALAVDYRDGQHVPRHRHRR FT AQLLYAIEGVMTVQAEAGIWVAPPTRGIWLPAGMAHSIRMHGQPRVRTVFVAPRAAGHL FT PDRCCVLAVGPLLRELIVAATRVPPDWRPGGRDARLMALLLDEIRLEPALPLHLPQPDE FT PRVARVCRGILSEPGAARGLAEWAAELGVTAKTVQRLFVRHTGMTFGRWRQQAGLLWAM FT QRLAEGVRVLDVALELGYDSPSAFAAMFRRAIGEPPSAFAARREPPA" FT misc_feature 445458..445595 FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 2.3" FT misc_feature 445494..445559 FT /note="Predicted helix-turn-helix motif with score FT 1471.000, SD 4.20 at aa 181-202, sequence FT RGLAEWAAELGVTAKTVQRLFV" FT misc_feature 445614..445742 FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 1.2e-05" FT CDS 445841..447700 FT /transl_table=11 FT /gene="ilvD" FT /locus_tag="BB0431" FT /product="dihydroxy-acid dehydratase" FT /EC_number="4.2.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP0289" FT /protein_id="CAE30929.1" FT /translation="MPHYRSRTSTHGRNMAGARALWRATGMKDGDFGKPIIAVVNSFTQ FT FVPGHVHLRDLGALVASEIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSV FT EYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPVVFVSGGPMEAGKITSPVDGKVIA FT KLDLVDAMIKAADPNVSDAEAEEVERSACPTCGSCSGMFTANSMNCLTEAIGLALPGNG FT TIVATHAWRKGLFEQAGRLVVELCRRYYEQDDASVLPRSIATKSAFENAMTLDVAMGGS FT TNTVLHLLAAAQEAGVDFTMSDIDRISRRVPCLCKAAPATDKYHIEDVHRAGGILGILG FT ELGRADLLDLSCGNVHSGTLGEAINQWDINGGAGEAAQKFFRAAPGGIPTTVAFSQDAT FT FLTLDMDRQTGCIRDKAHAYSQDGGLAVLYGNLAEKGCIVKTAGVDESQWVFTGRARVF FT ESQEDAVEGILGDRVQAGDVVIIRYEGPKGGPGMQEMLYPTSYLKSKGLGKTCALFTDG FT RFSGGSSGLVIGHASPEAAEGGTIGLVEEGDTIEIDIPNRRIHLAVGDTVLAERRAAMQ FT ARGEQAWQPVDRERVVSQALRAYAALATSADRGAVRDLSQLKR" FT misc_feature 445940..447679 FT /note="HMMPfam hit to PF00920, DE Dehydratase family, score FT 0" FT misc_feature 446204..446236 FT /note="PS00886 Dihydroxy-acid and 6-phosphogluconate FT dehydratases signature 1." FT CDS complement(447760..449097) FT /transl_table=11 FT /locus_tag="BB0432" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0292" FT /protein_id="CAE30930.1" FT /translation="MNLYRLLKQREADQKPLRVALIGAGKFGSMFLSQVQRTPGMRLVA FT VADLAPDRARAALTRVGWPAAALNADTIHHAVKTGKVYFSDDVRSVIVDPEVEIVIDAT FT GQAAAGIEHVLTCCEYGKHIIMVNVEADALAGPLLARRAREAGIVYSLAYGDQPALICE FT MVDWARASGFEVVAAGKGTKYLPEFHTSTPDTVWPYYGFTDEMVAAGDFNAQMFNSFLD FT GTKSAIEMAAVSNATGLLPSPTGLHFPPCGVDDLARVLRPREEGGMLHHRGQVEVVSSL FT ERDGRPVFRDLRWGVYVTLAGDSDYVRRCFKEYGLVTDPSGNYSAMYKPYHLIGLELGI FT SVASVGLRREPTGSPAGWHGDVVATAKRDMAAGQELDGEGGYTVYGRLMPARDSVADGC FT LPLGLAHNVRLKHPVRQSQPIRWSDVEYDERSPAVQFRRLMEQTFA" FT CDS complement(449227..449787) FT /transl_table=11 FT /locus_tag="BB0433" FT /product="putative 5'(3')-deoxyribonucleotidase" FT /EC_number="3.1.3.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP0294" FT /protein_id="CAE30931.1" FT /translation="MLILLDQDGVLADFEHAFIDAWRKRHPDIEPVAFKDRKSFHIRED FT YAPELRGLAEAIYTAPGFIRDLPPVPGAIEAFRELLALGMDVRICSSPLMQFENCVAEK FT YLWVERHLGREATQRLILTRDKTLVQGDLLIDDRPVITGAARPRWRHIIYDAPYNRDQT FT DRPRLDWRNWRNVLAGELYRSDA" FT CDS complement(449847..450434) FT /transl_table=11 FT /locus_tag="BB0434" FT /product="putative 2'-5' RNA ligase" FT /protein_id="CAE30932.1" FT /translation="MLRSSRASNDNARMAHPPTEAAIAPPRLFFALWPDPATAARLADW FT AAHAQLAYGGRVMRTDTLHLTLAFLGAATPAQAAELCAATAARRIAPATLALARYGLFA FT RQRIVWAGPQQADAALAALHDDLWTWLRALGWPAPQQGFQPHVTLLRNVDAHAAAPAPP FT PPVAWRYDHYALVQSQPQHGRASYRVLARTAA" FT CDS complement(450558..452087) FT /transl_table=11 FT /locus_tag="BB0435" FT /product="putative exported protein" FT /protein_id="CAE30933.1" FT /translation="MMGIAIMKHILPRGSALLAMLLVLAGCAVGPQYDKPAVAVPAAYK FT EAAALPAGQAGAWQAAQPAEDALRGQWWKIFGDPALDALEDEAQRANHSLQAAAARLAQ FT ARALQRDARSARFPRVDAGFGPTRQRPSPASQGLEPEASTQASTLWRGQLSVAYEADLF FT GRVSATVDAATADSQQSEALYRSVLLALQADVAQGYFLIRELDAELRIYRQTVELRGET FT LKLIQRRYDAGDISELDLARARAELESARAEALGVERRRAAAEHALAVLLGKTPAEFAM FT PAQPLARVAVNVPAGLPSSLLERRPDIAAAERAMAAANARIGAARAAFFPRLDITGAAG FT FESAELGQLFEWSSRTFLLGPLVGAALSLPIFDGGRRQASLDRARAVYEEDVANYRQTV FT LDAFREVEDNLANLRILADQTQAQDAALDASARAARLSHTQYREGSISYLDVIEADRTV FT LLQQRVAVQLDGERARSAVQLVRALGGGWDTPIPPPSQESVSAGKRAAANS" FT misc_feature complement(450603..451208) FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 3.9e-46" FT misc_feature complement(451236..451847) FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 1.2e-41" FT misc_feature complement(451998..452087) FT /note="Signal peptide predicted for BB0435 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.956) with cleavage site FT probability 0.386 between residues 30 and 31" FT misc_feature complement(452007..452039) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(452084..455269) FT /transl_table=11 FT /locus_tag="BB0436" FT /product="putative multidrug-efflux system protein" FT /protein_id="CAE30934.1" FT /translation="MNISRFFIDRPIFAGVLSVVVLLAGLLAMFQLPIAEYPEVVPPSV FT VVRAQYPGANPKVIAETVASPLEEAINGVEDMLYMQSQANSDGNLTLTVNFKLGVDPDQ FT AQQLVQNRVSQALPRLPPDVQRLGVTTIKSSPTLTLVVHLISPNDRYDITYLRNYAIIN FT VKDRLARLNGVGEVAVWGSGNYAMRVWLDPQKVAQRGMTASEVIAAIREQNVQVAAGVI FT GASPTQGDVPLQLNVNTRGRLQTEQEFRDIILKTSPDGGVTYLADVARVELDAQEYGLR FT SLLDNRQAIGMGIMQAPGANALDVADQVRATMQELAQDFPPGVEYRIEYDPTQFVRASI FT KAVVHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFALLLMFGYSINALSLF FT GMVLAIGIVVDDAIVVVENVERNISAGLTPREATYRAMREVSGPIIAIALTLCAVFVPL FT AFMTGLSGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLKGHHDKPDWLTRGMNRWL FT GGFFSGFNRVFGRASESYATGVSGVIRRKASAMGVYALLLALTVGVSYLVPGGFVPAQD FT KQYLIGFTQLPNGASLDRTDAVIRRMSDIALAEPGVQSAIAFPGLSINGFTNSSSAGIV FT FVTLKPFDERKPAALSGDAIAASLNQKFGAIKDAYIAVFPPPPVMGLGTLGGFKLQLED FT RAALGYAELDKAAQAFLAKAAQTPELGPSFSSYQINVPQLDVDLDRVKAKQLGVPVTDV FT FDTMQIYLGSVYVNDFNRFGRVFQVRAQADAPFRAHPDDILQLKTRNEAGDMVPLSSLV FT QVRQSFGPEMVVRYNGYTAADINGGPAPGYSSDQAQAAAERVAAETLPRGVKFEWTDLT FT YQQILAGNAGLWVFPISVLLVFLVLAALYESLTLPLAVILIVPMSILAALTGVWLTGGD FT NNIFTQIGLMVLVGLSAKNAILIVEFARELELQGMAPREAAIEASRLRLRPILMTSIAF FT IMGVVPLVLSSGAGAEMRQAMGVAVFFGMLGVTLFGLFLTPVFYVLLRALGARRLHAAA FT PHPAPVTAPHPEH" FT misc_feature complement(452159..455263) FT /note="HMMPfam hit to PF00873, DE AcrB/AcrD/AcrF family, FT score 0" FT misc_feature complement(join(452162..452230,452273..452341, FT 452402..452470,452483..452551,452570..452629, FT 453548..453616,453776..453844,453887..453955, FT 454016..454084,454097..454165,454184..454243, FT 455168..455236)) FT /note="12 probable transmembrane helices predicted for FT BB0436 by TMHMM2.0 at aa 12-34, 343-362, 369-391, 396-418, FT 439-461, 476-498, 552-574, 881-900, 907-929, 934-956, FT 977-999 and 1014-1036" FT misc_feature complement(455165..455269) FT /note="Signal peptide predicted for BB0436 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.841) with cleavage site FT probability 0.344 between residues 35 and 36" FT CDS complement(455286..456467) FT /transl_table=11 FT /locus_tag="BB0437" FT /product="HlyD family secretion protein" FT /protein_id="CAE30935.1" FT /translation="MIVSRHRIALLAVVATLLAAGGAYSLLRSPGGPAQAQAVPAAAPV FT DVAPALGRTIVDWQRYSGRLEAIDRIDIRPLVSGTLTEVHFQDGSLVKKGDVLFTIDPR FT PYVAEVDRARAALAAARARVSYTAADLARGQRLLAENAIARRDFEEKQNAAREAAANLQ FT GAQAALESAELNLGYTRIAAPVDGRVSRAEVTVGNVVAAGAASVPLTTLVSVARMYASF FT DVDEQTFLKYVNPARNGTVPVQLGLANEDGYSREGRVQSVDNRMDPTSGTIRVRAVFDN FT ADGSLVPGLYARIRLGGGAPRDAVLVDERAIGTDQNKRFVLVLEEGNRTAYREVLLGAN FT VGPLRVIENGLHAGERIVVNGLQRVRPGDVVAPSQVSMDTAPGAVKTAAAALR" FT misc_feature complement(455391..456263) FT /note="HMMPfam hit to PF00529, DE HlyD family secretion FT protein, score 5.4e-40" FT misc_feature complement(456360..456467) FT /note="Signal peptide predicted for BB0437 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.832 between residues 36 and 37" FT CDS 456711..457733 FT /transl_table=11 FT /locus_tag="BB0438" FT /product="LysR family regulatory protein" FT /protein_id="CAE30936.1" FT /translation="MDRFQAMQVFVRVVEANSFTRAADALVLPRTTVTTVIQGLERHLG FT VRLLNRTTRRISLTPDGAAYYKHATRILAEVEETEACFQDAAARPQGRLRVDVPPCIGR FT LVLIPALCEFHTRYPDIELVIGMGDRRVDLVQEAVDCVIRSGELEDSSLVARRIGTFQT FT LTCAAPSYLARKGMPHTLQALAEHQAVHYFSATGRNCSWDFVVDGKETLVDVPGVVSVN FT DLSAHLACGLQGFGLIQTARYIALPHLQSGDLIEVLPQWKPKPVPMSLLYLQSRQLSPK FT VRVFSDWVAELFARCPLLSGRTEREGEMEQCQVEKAELTPAAAAAARQRMPSEAPEFVM FT " FT misc_feature 456720..456899 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.2e-18" FT misc_feature 456759..456824 FT /note="Predicted helix-turn-helix motif with score 980.000, FT SD 2.52 at aa 17-38, sequence NSFTRAADALVLPRTTVTTVIQ" FT misc_feature 456762..456854 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 456969..457592 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.9e-43" FT CDS 457942..459045 FT /transl_table=11 FT /locus_tag="BB0439" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3604" FT /protein_id="CAE30937.1" FT /translation="MHQPVLPAFLIARWLLLLVLLAGIYFLSGFLVPALAALIIGLATW FT PLFQRLVRAFGGRTTLAATLALVAVIVILVVPLSLALSYAIKEAGNFFAWALAANKHGV FT DVPAWIMSLPMVGERLAEYWRTYLGEPHALGALVEIVSGEHLGNIYRMVLSATGNAFQL FT LLTVLFMLITLFFVYKDGTRMVGQLDILGERVLPARWQRFSRVVPATVSSTVTGMCLIA FT LGEGVVLGLAYWVAGVPSPVLLGVITGFMALVPGGAPLSFTLVSLYLVGSGHLVAGIGL FT FVWGTVELFIVDKTLRPRLVGGPVKLPFLPTFFGLVGGVKTMGIVGLFVGPVLMALLVA FT IWREWVRNVERERDQSILNPEGEEPAA" FT misc_feature 457942..458049 FT /note="Signal peptide predicted for BB0439 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.993) with cleavage site FT probability 0.983 between residues 36 and 37" FT misc_feature join(457954..458022,458032..458085,458122..458190, FT 458407..458475,458572..458640,458668..458736, FT 458749..458817,458908..458967) FT /note="8 probable transmembrane helices predicted for FT BB0439 by TMHMM2.0 at aa 5-27, 31-48, 61-83, 156-178, FT 211-233, 243-265, 270-292 and 323-342" FT misc_feature 457972..458979 FT /note="HMMPfam hit to PF01594, DE Domain of unknown FT function DUF20, score 1.7e-28" FT CDS 459132..459896 FT /transl_table=11 FT /locus_tag="BB0440" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3605" FT /protein_id="CAE30938.1" FT /translation="MSAALVAQQVATLREQGFVVVRNFASPPVRQALRELALQHLAQTV FT DPVEYEADLKYPGAPSSRLAAGGQTVRRLLDAYGRDQRFRDWATQAAIGAFLRAYFQDT FT PVLSTVHHNCIMTKHPAFGSLTGWHQDIRYWSFSDDDLVSCWLALGDERADNGGLYFVP FT GSHTASFMPEQYDARKFFRDDLPQNQEWIGRAVCPELQAGDVVFFHCRTLHAARQNATD FT TVKLSLVHTYHPASCHPLPGTRSAGSPGVPLP" FT CDS 460018..461208 FT /transl_table=11 FT /locus_tag="BB0441" FT /product="putative potassium channel protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3606" FT /protein_id="CAE30939.1" FT /translation="MIRLRNFLRRIGRYFPPNWWLAALVAIDGYLFVRPVLGRAVDYPM FT DYWLSFDSWRDAMDAVGLLQIPRVILGAGLLLMAAGLVLKARIAWAFSLVLLGAIGVVA FT GWDGGHGLLLAYTGVLIAALVCFWRRFDRASLAAGSLFAVISITSLLIYAVFGTLYLGA FT EFSPKVESPATAFYFSIVSMSTVGYGDITPQTTAARLFAASIIILGITVFATSISAIAG FT PVIGGNLKRLVRGRISHAMRKHHIIIAGATPLAQSVYAGMRERGNNVTVVVAPGIAHNY FT PEDADLVTGDPSNTAVLAEAGAAHARYVLALRDDDADNAFIVLAAKEVAGPDTKTVAVA FT NTAMHLAKIRRVQPDMVFSLQLLGAELLARTLSGETIDNALITDLFFTKATPSSAA" FT misc_feature 460072..460677 FT /note="HMMPfam hit to PF00520, DE Ion transport protein, FT score 1.4e-07" FT misc_feature join(460072..460140,460198..460266,460279..460335, FT 460348..460401,460438..460506,460534..460593, FT 460630..460698) FT /note="7 probable transmembrane helices predicted for FT BB0441 by TMHMM2.0 at aa 19-41, 61-83, 88-106, 111-128, FT 141-163, 173-192 and 205-227" FT misc_feature 460750..461097 FT /note="HMMPfam hit to PF02254, DE TrkA-N domain, score FT 5.9e-10" FT CDS complement(461216..461611) FT /transl_table=11 FT /locus_tag="BB0442" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0518" FT /protein_id="CAE30940.1" FT /translation="MPASTAPARYLAPDTLARPGGHYSHACVANGMVYVSGQLPIGPDG FT TKLADAPFEAQARQVLDNVAAALAAAGSGIDRLVQVRVYVDSVENWPAFDAIYAEWAGA FT ARPARAVVPTGPLHYGFKVEVEAVALA" FT misc_feature complement(461222..461569) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP, FT score 6.3e-33" FT CDS 461781..462482 FT /transl_table=11 FT /locus_tag="BB0443" FT /product="probable glutathione S-transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0519" FT /protein_id="CAE30941.1" FT /translation="MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLDDMR FT RRRDTPPFAPPYLVADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTA FT EAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWS FT YADLSLYHVVEGLLHAFPRRMRTLVHRYPRLMALHARVAELPELRGYLASDRRLPFGDG FT IFRHYPELDGA" FT CDS 462745..463605 FT /transl_table=11 FT /locus_tag="BB0444" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0520" FT /protein_id="CAE30942.1" FT /translation="MIPRNAKLAAGAGVLFVLILMLAFSSWFQVDQGERGVVLRNGKLV FT RVSEPGLDFKTPFIDSVSTVSVRDHTFIFENLEAYSYDQQPATLRVSVTYRVPAEHVAE FT LYAEYGTISNLQMRVLERKTPDAVKNVFGRYTAVRAIQERQKLGVDVNAAVLSAMDGAP FT VQIVGVQVEEVGFSKAYEHSIEQRMLAQVQIETTRQQKETAMITAEIQVVKAKAEADAR FT RQQFTAEADGIRLRGEAEAASIRAKAEALAANTNLVSLNAVEKWDGVLPATQVPGAALP FT FIGIK" FT misc_feature 462745..462819 FT /note="Signal peptide predicted for BB0444 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.781 between residues 25 and 26" FT misc_feature 462820..463413 FT /note="HMMPfam hit to PF01145, DE SPFH domain / Band 7 FT family, score 3.3e-20" FT CDS complement(463681..464016) FT /transl_table=11 FT /locus_tag="BB0445" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0521" FT /protein_id="CAE30943.1" FT /translation="MSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASV FT QKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSNAPGAP FT TKDQTQA" FT CDS complement(464157..465302) FT /transl_table=11 FT /locus_tag="BB0446" FT /product="putative metal-activated pyridoxal enzyme" FT /note="ortholog of Bordetella pertussis (BX470248) BP0522" FT /protein_id="CAE30944.1" FT /translation="MTTTHAHPLDTLDTPAAIVDVARMQHNIARMQDRMNGLGVSLRPH FT VKTSKCTPVALAQLAAGARGVTVSTLKEAEQFFAAGIADILYAVGMAEHRLPAALALRR FT RGCDLKIITDNAESARTIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALH FT EGGMRLGGVMTHAGSSYDLDTPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTP FT TALSAAQLQGVTEVRAGVYVFFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDA FT GWMAMSRDRGTQKQKQDFGYGQVCTADGAPLAGYTLIGANQEHGIMAGGPAGEDVTTRF FT PVGMRLRILPNHACATGAQFPQYHALEADGGLQAWERAHGW" FT CDS complement(465329..465988) FT /transl_table=11 FT /locus_tag="BB0447" FT /product="probable haloacid dehalogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0523" FT /protein_id="CAE30945.1" FT /translation="MSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEY FT LRLAYGCGRYVPYGQLVRDAARATGLPDGAPAALEANWHELPVWDDARSLLRALRPHCK FT LAVVTNCSRDLGHQAAGLLGVDWDAVVTAEEAGFYKPDPRPYRMALQALQVPAGDTAFV FT AGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAAALPWLQAFRPAVR" FT misc_feature complement(465431..465961) FT /note="HMMPfam hit to PF00702, DE haloacid FT dehalogenase-like hydrolase, score 4.9e-12" FT CDS 466080..466988 FT /transl_table=11 FT /locus_tag="BB0448" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0524" FT /protein_id="CAE30946.1" FT /translation="MLRIEDLQLAAALAQAPSLSAAARALNVTPPALSMRLRKLEAGLG FT LALAVRSARRLSLTPEGERLAREAAALLAQLQALPESLRRDDSRLTGTLRVAAPFGYGR FT RHIAPVLARLAQRHPELRVQLDLRETPWPDHQDADAVVHIGAVRDSSWVTRRLADNERW FT LCASPQYLQDHGMPREPRDLLHHRCICIRENDEDASLWRFRRADAGAAGRKAAETVRIA FT PAYVSNDGNVARAWAEQGLGLVVRSQWDAEGAVARGALVRVMPQWQLDSAPVMLLVPGR FT KGRSARVKALLECFDEQAGHA" FT misc_feature 466080..466148 FT /note="Signal peptide predicted for BB0448 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.932) with cleavage site FT probability 0.277 between residues 23 and 24" FT misc_feature 466089..466268 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.4e-16" FT misc_feature 466128..466193 FT /note="Predicted helix-turn-helix motif with score FT 1611.000, SD 4.67 at aa 17-38, sequence FT PSLSAAARALNVTPPALSMRLR" FT misc_feature 466131..466223 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 466338..466979 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 8.3e-34" FT CDS 466985..467179 FT /transl_table=11 FT /locus_tag="BB0449" FT /product="putative integrase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0525" FT /protein_id="CAE30947.1" FT /translation="MSGKFEGVRPASESSIEISFVYQGKTCVRRLRMKPTAANLKRAAE FT QRAAIVEAIARGEHGGEQA" FT CDS 467491..473949 FT /transl_table=11 FT /locus_tag="BB0450" FT /product="autotransporter" FT /protein_id="CAE30948.1" FT /translation="MPQRSQPFNSYTGHSGVRGHGVAPTVLVLALGFHGTAAWADCQTA FT GSAVTCDASSPNPYTGTVGSGASSGNLTITVGPGARIESGNAHAISVGTGNTISLDGNA FT QVSNSVTTGGPGNYNAGLNTIEFEHTNTLMIGADARVAAEGTDPAAHAIAFTGRTNVVT FT NYGTVSSASGAAIWNQLEDNFVSNTIYNYGVIETTANGGDAVVIGSATGNGATDRGMTL FT YNYAGGRITGNVVLGEGDDTVRLEAGSTLTGSLDGGAAGTDVLYLEGTSGSGELTQDIS FT NFDEINKIESGATWTLSGSLGANSSGKATVVNAYNGELIVTGDNSAAAAGSAMTVWGGA FT RLQVNTTSAMAAIQSNGSGVAAFSQQTDGTYAGVLSGGGNFAKEGAGSLTLTGVNTYTG FT ALQLKEGKVIVSAAENLGAANSRLEFDGGTLNTTSDMTSARRTTIDAGGGTFEVAGGTT FT LNWTGRMLGNGTLVKEGAGTLALSGFNAHGGTVVNAGTVQISNDYGLGNGALTLNNSRL FT ASTADIYAEAAATVNGNGTFDTANGTTLQWMGDIGGAGALVKTGAGTLLLGGDSLYAGG FT TVVNAGTVQVFKDASLGGGALTLNNASLASLGSFSTARAATLTGNGTFDTTVGTTLGWT FT GDIGGAGALVKTGQGTLVLGGDNQYAGGTTVNAGAVQVSRDANLGAAAGAVALNDARLA FT STGTFSTARAATLTGNGTFDTATGTTLGWTGDIGGAGALVKTGQGTLVLGGDNQYGGGT FT TVNAGTVQVARDANLGGAAGTVALNGGTLAASASFSSARGVTIGAGNGAMSVASGASLD FT WQGLIDGTGALAKEGAGTLVLGNDNQYAGGTVVNAGTVQVARDANLGAAAGAVTLDGGT FT LAASAGFSSARGVTIGAGNGAMSVASGASLDWQGLIGGTGALIKEGAGTLVLGNDNQYG FT GGTTVNGGTVQVARDANLGAAAGAVTLDGGTLAASAGFTSARGVTIGAGNGAMSVASGA FT SLDWQGLIGGTGALIKEGAGTLVLGNDNQYGGGTTVNGGTVQVARDANLGAAAGTVALN FT DARLASTGTFSTARAATLTGNGTFDTATGTTLGWSGDIGGAGALVKTGQGTLVLGGDNQ FT YAGGTTVNAGAVQVARDANLGAAAGAVALNDARLASTGTFSTARAATLTGNGTFDTATG FT TTLGWTGDIGGAGALVKTGQGTLVLGGDNQYGGGTTVNAGTVQVARDANLGVAAGTVAL FT NGGTLAASASFSSARGVTIGAGNGAMSVASGASLDWQGLIGGTGALIKEGAGTLVLGND FT NQYGGGTTVNGGTVQVARDANLGAAAGTVALNDARLASTGTFSTARAATLTGNGTFDTA FT TGTTLGWSGDIGGAGALVKTGQGTLVLGGDNQYAGGTTVNAGAVQVARDANLGAAAGAV FT ALNDARLASTGTFSTARAATLTGNGTFDTADGTTLGWTGDIGGAGALVKTGQGTLVLDG FT DNQYAGGTTVNAGTVQVSRDANLGAAAGAVALNDARLASTGTFSTARAATLTGNGTFDT FT ADGTALGWTGDIGGAGALVKEGLGTLVLDGDNQYGGGTTVNAGTVQVARDANLGAAGGA FT VRLQGATLASTGSFASARALTLGAAGGTFATLGATTLGWDAAIDGAGGLTKTGAGDLVL FT SQANTYAGPTLIKEGRLAVNGSIASPVTIDPGGVLGGTGRVLGAVANSGTVAPGNSIGT FT LTIVGNYAGTGGRLEMEAQLGGDASPADRLVIDGGAATGRTDVVVINQGGLGGQTDQGI FT PLVVARNGATTTADAFSLASPVAAGAYEYKLLRGTPDGTAANAQNWYLRSGLLVPPAEV FT PGGGPGGAPEPEFIPFYRPEVALYAGAPMLMRAVGLQALGTYHERTGEQGLMTRDDPDP FT VRRGAWTRAFGRTFERSGSGDVDPRFDGHVAGLQAGVDLYARRSDQGHADLAGVFGGYA FT NARGHMDGFARGETGAYAGKPDLNAYYIGGYWTHIGPSGWYVDAVLAGTRYEQKAKSSN FT DLRTEAKGWGVTASVEAGYPVPIGEKWHIEPQAQLVYQRLTVSNGEDDVSSVSYRTPDS FT VTARLGARLSGQYAYNTTQLRPFMEVSLLRDFAGTDTVTFSGIDRIDSRYQATAVDLTA FT GLVAQVRKDVGLWGQVGYGKSIGGGDGSDRGWAASLGLRIEY" FT misc_feature 469183..469218 FT /note="PS01098 Lipolytic enzymes 'G-D-S-L' family, serine FT active site." FT misc_feature 472528..472908 FT /note="HMMPfam hit to PF03212, DE Pertactin, score 0.00028" FT misc_feature 473077..473943 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03797, DE Autotransporter FT beta-domain, score 1.1e-32" FT misc_feature 473860..473883 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 474034..474195 FT /transl_table=11 FT /locus_tag="BB0450A" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0526" FT /protein_id="CAE30949.1" FT /translation="MGAQADRLHGKRYECAFLPTEEDNMKTCIHVLAAVSGDARDQHET FT DAEMRDGK" FT CDS 474227..474358 FT /transl_table=11 FT /gene="ecnA1" FT /locus_tag="BB0451" FT /product="entericidin A anti-toxin precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0527" FT /protein_id="CAE30950.1" FT /translation="MNNRIRAALLAAITLVALAGCNTMSGAGKDIERGGEKIQEKAQ" FT misc_feature 474257..474289 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 474574..481707 FT /transl_table=11 FT /locus_tag="BB0452" FT /product="autotransporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0529" FT /protein_id="CAE30951.1" FT /translation="MIAGVSSHWQASWEDYEFLSGFRRHARARPLTASDRHGRTDQFAA FT WPLHPSCFIHKPYQRRGVIPACAHTFHFAGEIMRRLRAQAFEGSRSRPAGHGVAPTLLA FT LALGFQGAAAWANCTTSNGATTCTNANGSHTNKVGSGPSGMNERVTVNQGARIETNASA FT AISVGTSGQVRIEGGAVVQSTVNTAASGQYAKTLEAASNNNISIQVGAQLLAKGSASQS FT SALGLSGAGNTVTNHGTIRADNAAAIWITANTANAANTIDNYGTIETVLNGGYANAIGS FT TRNNSATGAGVTVRNHANGRIVGNVKFEAGDDSVILDGGSTITGSLNGGSGNNSLTLKA FT GDGTLGRAIRNFGTITKQEAGTWTLNGQVGRNDNNLKSTVKVEGGTLVLRGDNSGATQG FT GVLQVSAGATADVTAASAMQSISNAGTVQFTQDSNAAYAGVLSGTGSIVKRGGGDLTLT FT GNNTHTGKVVVEAGSLSVSAANNLGGAGSSVQLKGGALALKKTIAVNRGLTLDSGAQTL FT IIEPGTTTTWQGQVSGAGKLVTQGGTLVLEHASNTYSGGTEINNGTLRAAHDASLGSGT FT LALKNSQLAATDSFTATRALTLAGNESIDVAATKILSWNGEISGAGTLVKEGQGTLLLR FT GTNQQNGGTTVNAGTLQISRDANLGRGALALNDGTLQSTGSFATSRAATLRGQATMEVD FT ASHTVTWNGELSGGGMLRKSGQGTLALAGANTYSGGTVVEAGALRAGHEDNLGRGAITL FT QGGDLLAGGSFSSNRDLTLVRGSLDVARDATLTWNGAISGAGDLVKTGDGTLALTGVNE FT YAGQTVLRQGKLRVAREESLGGGALVLENNTVFESAGSYAIGRRVTLKGAPKVATPAGD FT TLEWRGTVDGDGKLYKQGGGTLVLSGNNTYAKGVEVWGGVVQVSRDQNLGAANGAVTLN FT GGGLAANGDFTSNRQLELTAGAKAIDVAAGKDVTWRGVVNGAGALTKAGDGTLRLEGVN FT TYTGGTRLQGGTVQVSRDNNLGQAAGAVTFDGGRLASTGSFATARAATLNNAGQIDTAQ FT GTTLTWNGAIGGKGELRKQGAGTLVLGGANTYQGDTRVEAGTLQVSADANLGQGAVHLH FT DSRLATTGTFATSRRLELTGRGTVQAAAAATLDWRGTVAGAGTLVKEGAGTLVLAGDNQ FT HAGGTEVRAGTLQVSRATNLGPGALALENAALATTASFTATQAATLTGNAAIDTAAGTT FT LGWEGAIGGTGSLHKKGEGKLVLVKDNHHDGGTTIHAGTLQVSRDANLGSGQSAVTLDG FT GALAVSAGFSSGREIVVGAGHGALSVAGGHTLQWQGQVGGAGALTKTGDGTLVLEHDNT FT HAGGTRVTGGVLRVSRDENLGEAHGMLTLDGGTLSTTAGFASRRNATVGNGGGRIVVAD FT SATLDLQGDVAGAGRLVKEGAGTLALGGTNTYAGGTVVEAGTLRVARDANLGGGALTLN FT NSRLHATAGFATGRDATLTGRASIDTDNRATLQWRGTVDGAGRLVKQGLGTLVLDGDNR FT YAGGTEVNAGTLQVARDANLGAGDVALNGSRLAATASFATARTATLSGAAAIDTADGVT FT LDWNGLLDGDGALVKQGNGTLALAAANRYGGGTIVKAGAVRIARDANLGRAGTGVTLDG FT GALATTADLATGRAATLGAAHGTLEVAAGTRLDWNGAIGGAGALTKTGAGTLALNHDNQ FT HAGGTLVHGGTLRIARDANLGAAGTAVTLDGGTLATTASLALDRALRVGARNGVLQPDA FT GTTLDWRGVVAGAGKLTKAGPGMLVLSADNRHGGGTAVTGGTLQVSRDANLGAAAGALT FT LDGGTLLSTASFASARAATLDAAGGTFVTRDGTRLDWDGAIGGAGGLVKEGAGELRLGN FT ANTYQGPTRIAAGRLAVNGSIASPVTVEQAGVLGGTGRIVGDVANRGVVAPGNSIGALT FT VAGNYAGTGGSLEVEAVLGGDAAPADRLVLDGGAASGVTPVVVKPQGGVGGLTLRGIPV FT VVAQGGATTAPGAFRLAQPLVAGAYEYQLLRGAGDGAAAQAQDWYLRTSRVERDKAGRI FT VKVVPFYRPEVALYAGTPMLMRMTGTEMLGSYRERAGQTGAVSPEAGATAARGGWARTF FT GRRFERSAGGEAAPSFDGHLAGAQLGADLYARSSATRHTDAFGVFGGYATVRGDVHGLA FT RGEIQAVGTSTLRATQLGAYWTHTGPGGWYIDTVLAGTRYRQQTKSSAQVGAVSRGWGM FT TASVEAGYPWQLNPRWRIEPQAQVVYQQLGIANGADRVSTVSYKTPDALTARLGTRLSG FT QYAYGKAQLRPFMGVSLLHDFTGADTVTFAGAHGVRASRQNTAVDLKAGVDTQLGKSVG FT LWGQVGYGKSVGSGDGSDRGWSANLGLRVAY" FT misc_feature 476095..476130 FT /note="PS00141 Eukaryotic and viral aspartyl proteases FT active site." FT misc_feature 480838..481701 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03797, DE Autotransporter FT beta-domain, score 1.4e-28" FT misc_feature 481618..481641 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 481759..482340 FT /transl_table=11 FT /locus_tag="BB0453" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0530" FT /protein_id="CAE30952.1" FT /translation="MPTTMPALRPQVLTEAAFAPYGWMLGKPLPAGDDVPRFSNPATDF FT WQEHVFDTGVGAGRETEVLWVNYRVSQPGFDTLEKHLLTQQAIVPLTGAIVQIVARSAF FT DGSPDLASLAAFVVPPGQGICMRPGCWHATRISGGEVTCLMLTRRSTTLDLVRHLHGEP FT ARESEIVAIVPHGLDLPARPTTEGPSPHGR" FT CDS 482729..483706 FT /transl_table=11 FT /locus_tag="BB0454" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0531" FT /protein_id="CAE30953.1" FT /translation="MYRIVSALAVSVTCLAGMGAAQADQGAAAYPDKPIKIVIPYSAGG FT GTDQFMRIVSERASRVLGQPITILNKPGGSTVIGVNAVIGAAPDGYTLLVSTNTSYTLI FT PYVMSPPPYAPEKSLDYVATLGQTSMVLTANKTMPSDLKTVLDSARQSPGRYTYATYGV FT GSSTHLAGEVFMNDTGVEFRHIPYKGVEAVTALAGNQVDLMIDGINAAGTMLDAGKTQA FT LVVLQRTRSQFLPDTPTLVEAGYPEAAENVISYVMAAPKGTSAAVIDKLQKSFAEALRD FT PGVLAQAKAMRTEAAFKGPAQTQAFVDSQSALFKDIVAKKNIKF" FT misc_feature 482729..482797 FT /note="Signal peptide predicted for BB0454 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 23 and 24" FT misc_feature 482876..483697 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.8e-55" FT CDS 483720..485294 FT /transl_table=11 FT /locus_tag="BB0455" FT /product="putative substrate-CoA ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0532" FT /protein_id="CAE30954.1" FT /translation="MSSLEQQMQPPGQTWWDIIEAHARRFPERDALAHGDGAITYGELV FT ARVRRCAAGLSARGIGAGDCVALLAPPTPDAMVCLLAAARLGALWVGLNPRYQAREMAY FT VIGHAQPKLVLSVREFEARRYADDLEAALATLAPQARRPELLYYDSQASCDEAMLHALC FT DAPDAACPAPFDDAAQPCMLVYTSGTTGNPKGVLLSQTALIYRSTVQARTFATRSHPVV FT INFAPINHIGGMHFRGLSQILAGGTIIYQERYRPAEVMGLIEKHRVNMLMLGSTMLQML FT IREPSFDMSIMRGMEWFIFSGAAIPMPILQRVKEHCPRIGSTYGLTESCGSVSYIVASD FT SLEAAAYTVGRAIPEGQLRVADEQGQPLPAGTQGELQVRGQYCMNGYLRDAAATAGAFT FT RDGWLKTGDMAQREDDGNFRLVGRIKEMYKSGGYNVYPREIEVVLEQHPNVLMSAVIAV FT DDELYQQVGHAHLILRPDTEVSEPELVQWCRERMANYKVPKRIFVRNSLPMLSIGKVDK FT IALRQQH" FT misc_feature 483837..485084 FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 3.1e-108" FT misc_feature 484266..484301 FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 485302..486042 FT /transl_table=11 FT /locus_tag="BB0456" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0533" FT /protein_id="CAE30955.1" FT /translation="MSNPLNRYHHILHAIAGRPGGLSLADLAAATGLPRSTTHRMATTL FT REIDYLGQDDASGNFVLGDGLIGLMRSSLAQDSKLALFDPALNFVVGRLEETAFCARLW FT NDEVDLVQAVTPTRKDQLYIYPGVGGRPLDKCSSSKAILAYLDPARIQALLEPLASSTP FT GLRVDTLMQELDQVHRQGFAICDGEIDEGVLSVACPVMSGPARGLYSIGVVGPAARLKS FT HDLQEIVEVLHSAADLAAAELLNS" FT misc_feature 485365..485430 FT /note="Predicted helix-turn-helix motif with score FT 1208.000, SD 3.30 at aa 22-43, sequence FT LSLADLAAATGLPRSTTHRMAT" FT misc_feature 485479..486027 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 8.8e-11" FT CDS 486066..486830 FT /transl_table=11 FT /locus_tag="BB0457" FT /product="probable enoyl-CoA hydratase/isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0534" FT /protein_id="CAE30956.1" FT /translation="MKEIISLEKTGAVATVTIDRGGKRNALSQEMVLRLTDIALQLQQD FT TSVACIVLSGNQNEFSAGIDLGDATRWSLDDKTQLERRAIALRGTRLCKAWEDLPQITI FT AAVEGMNVGGGIALTLACDWRVMGKSAFLFVPEVQIGIPLGWQTIPRLVNLVGPARAKQ FT IVLLGEKMSADTALEWGVADFVVADGAACAHAQDLAARIGKMPELAVRMSKQSINAYAN FT ALNHLGSHMDVDQAMLCGQTQDAVAVRDRYAR" FT misc_feature 486105..486626 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 7.3e-28" FT misc_feature 486399..486431 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 486875..487210 FT /transl_table=11 FT /locus_tag="BB0458" FT /product="probable carboxymuconolactone decarboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0535" FT /protein_id="CAE30957.1" FT /translation="MLDWNQYRSELMTRIGEIAKASPETVKGYQQLSAAGKQTNQLDAK FT TRELIALAVAVTTRCDGCIAVHAKAATDNGATKGEIAEALGVAVALNAGAALVYSARVM FT DAVDAAQ" FT misc_feature 486905..487192 FT /note="HMMPfam hit to PF02627, DE Carboxymuconolactone FT decarboxylase, score 6.2e-20" FT CDS 487264..488265 FT /transl_table=11 FT /locus_tag="BB0459" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0536" FT /protein_id="CAE30958.1" FT /translation="MSRLARLLLAGCCALGAAAPAGAGNWPAGAGNWPAGPVTFIVPFP FT AGGSMDTFSRPIAGQLSKELGVPVVVSNRSGAGGGVGIAAIARAAPDGYTIGMSSVGNM FT AINPHIYPDLPYSPLKDFTPIGLAGRFVNVLVVNSKIPARNVQELIELDRKKPGSITFA FT SAGNGSTNHLSGELLKQLTHTSFLHVPYRGSGPALADVVAGNVAFMFDTLNTSMPLIES FT GALRALAVTSAERSPFLPDVPTMNEAGVAGYAKSGEDLWWAIIAPQGVPADVRDKLNAA FT LNKALGSPALQAQVRAQRVETLTSTPDALQTILRDDYNRWGGIVRDAGVKLD" FT misc_feature 487264..487332 FT /note="Signal peptide predicted for BB0459 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.940 between residues 23 and 24" FT misc_feature 487420..488253 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 7e-99" FT misc_feature 487930..487980 FT /note="PS00237 G-protein coupled receptors signature." FT CDS 488366..489388 FT /transl_table=11 FT /locus_tag="BB0460" FT /product="zinc-binding dehydrogenase" FT /protein_id="CAE30959.1" FT /translation="MPCLARFEEASMFDALLLTQNDDRAIVAQRARLDEAQLPDGDVLV FT DIAWSTVNYKDALAITGRIPIVRQFPMVPGIDFAGTVLESHDSRYRAGDAVLLNGWGLG FT EAHWGGLARKARVKADWLVPMPGGMDARRAMAIGTAGYTAMLCVMALQRAGVSPEAGPV FT LVTGANGGVGTIAISLLARLGFEVHASTGRLNEADYLKQLGATELIDRATLNQPGKPLQ FT KERWAAAVDSVGSHTLANVCASIRYGGTVAACGLAQGMDFPATVAPFILRGVTLAGIDS FT VYAPFARRAEAWGRLASELPAEITDANTRAITLDEVVDLAPRLLAGQVRGRVVVDVGAG FT " FT misc_feature 488423..489376 FT /note="HMMPfam hit to PF00107, DE Zinc-binding FT dehydrogenase, score 5.3e-27" FT CDS 489480..490733 FT /transl_table=11 FT /locus_tag="BB0461" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0438" FT /protein_id="CAE30960.1" FT /translation="MQSFYQEPAVAADLKEAPHPPKALSGLRVLDIATFLAAPFCGTIM FT ADFGADVIKIEQPKGGDSLRKFGTPSPCGDTYMWMSEARNKRFVTLDLRTPEGAALFKE FT LVRESDVVLENFRPGTLEKWGLGYDVLSELNPGLILLRVSAYGQDGPKREEPGFARIAH FT AFGGLAHLAGEPDGPPVVPGSTSLADYISGLWGAIGVLTALQARNHTGLGQVVDIGLYE FT SVFRLLDEIAPVYAATGFVRRRLGADVPNVAPHSHYQTRCGQWVAIACSNNRMFERLAS FT AMGKPELAGDARFATAAARAENRPAINAQVAAWSARFDLQALLDLCRDEGVPCSKVYSI FT EDIFQDEQYRARGNLMEVDDPRIGKTVLPAPVPRLSGTPARFLRAGGALGQDNAGVFEE FT LLGVCGERLAALRQAGVV" FT misc_feature 489744..490316 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 3.8e-63" FT CDS complement(490711..491673) FT /transl_table=11 FT /locus_tag="BB0462" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0437" FT /protein_id="CAE30961.1" FT /translation="MGKEKSRPLPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTG FT QIKQLEAQLGVDLFHRTTRQVRLTAEGAQLLESARRAVHEMENGLRQIQETVDLKRGRI FT FLSCSTTVSSTRLAPILAAFERDYPGVEVFVRELTSGDMFETVRREEADFGIGPIMELP FT EFDFEPILTENLYAVVPRNLFPDTAEQITLARLASMPLLLLNPGTALRALIDDTARSRG FT LTINTKFQFSQAQTLISMATAGLGAAVLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVR FT LRHRKLTPAAARLAQLVRDLIHGPSGRRTARATTRRPPA" FT misc_feature complement(490765..491385) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 9.3e-40" FT misc_feature complement(491455..491634) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.4e-22" FT misc_feature complement(491500..491592) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(491530..491595) FT /note="Predicted helix-turn-helix motif with score FT 1062.000, SD 2.80 at aa 27-48, sequence FT CSFRQAAELSHRSQAAVTGQIK" FT CDS 491826..492302 FT /transl_table=11 FT /locus_tag="BB0463" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0436" FT /protein_id="CAE30962.1" FT /translation="MLLARGRLLEDFKTGDQYAHWPGRTITEADNIQFSLLTMNRHPAH FT CDHHYASQTEFGKPLVNSGLTLAIVLGMSVDDISANAVANLGWQEIELLAPVHPGDTVY FT ARSQVLSVRESKSRPGQGVVTVRTEGVRADGVVFMRFVRSCLVPSRASLAGARQ" FT misc_feature 491856..492221 FT /note="HMMPfam hit to PF01575, DE MaoC like domain, score FT 3.9e-18" FT CDS 492299..493531 FT /transl_table=11 FT /locus_tag="BB0464" FT /product="putative dehydratase/racemase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0435" FT /protein_id="CAE30963.1" FT /translation="MNLDFLKGVRVIESSAFIAAPLAGLTLAQFGAEVIRLDMAGGGID FT YERMPRMPGGTSLYWTGLNKQKRSVALDLRKPEGRDLARKLVCAPGPDAGILLTNIGVP FT WLSHAALAEGRPDVITCTIEGNADGSSAVDYTVNCATGYPHATGDGREPVNSPLPAWDA FT CCGYQAAMAVVSAVLRRRQTGQGAELRLALSDVAFALMSHLGTLAQAELLGEDREPLGN FT HLYGAFGRDFVTRDGNRVMVAAISKGQWQSLVRTCGLAEAVAAIEARTGAKLAEEAQRF FT AHRDAIAAACEPWFRARTLAQAKTALDDGGVCWGLYQTATQMLARDGRAGSANPLFERI FT ATAGAGEHWALGTPVREPRATRQPTQGASRLGQHTDQVLGELLGLSARQLSDLHAAGVV FT AGPSGDPRGAH" FT misc_feature 492506..493057 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 6.8e-09" FT misc_feature 493418..493483 FT /note="Predicted helix-turn-helix motif with score FT 1034.000, SD 2.71 at aa 374-395, sequence FT HTDQVLGELLGLSARQLSDLHA" FT CDS 493595..494560 FT /transl_table=11 FT /locus_tag="BB0465" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0434" FT /protein_id="CAE30964.1" FT /translation="MTLRFASLAAALCILAPQAHATQAYPDKPVRIIVPWTPGQATDVA FT ARAAGEKLAAALGQPFIVENRAGAGGTIGATAVAKSEADGYTLLAGSSGSVTVNPLLMK FT SGFSPSDLEPAGLVAKVPYVLVTSSDFPAKTAQELIDLLRKSPEKYTFASSGNGSIGHL FT TAEVFMDSAGIKAQHIPYKGSAAALTDVLSGQVSFMWDSVASVAPHVKSGRARAYAVSS FT AQRSASMPDVPVLAEVSEIKGFDMVAWVGLMAPKGTPEDRLERINQALLESLRASDVAK FT QFVTLGIDPYPASRQEARKVLAAENQRVSEMIQRLGITPQ" FT misc_feature 493595..493657 FT /note="Signal peptide predicted for BB0465 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.957 between residues 21 and 22" FT misc_feature 493727..494548 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.4e-101" FT CDS complement(494547..495533) FT /transl_table=11 FT /locus_tag="BB0466" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0433" FT /protein_id="CAE30965.1" FT /translation="MDRFDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLR FT VRLLNRTTRKVNATADGAAYYERVRQLLADLEDAETSLSGASATPGGRLRVDVPSPFAS FT TILVPALPAFQARYPDILLHLGVSDREVDLIDENVDCVIRGGQIGNLSLAARHVGDLQL FT GVYASPGYLARAGVPAHPRELQDAQHRIIGFSWSRARRLFPCAMRRADERIEVAGRHAL FT LLDEGNAYLAAGLAAMGVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHV FT SAKLRVFIDWIVELMARHAPVTDAPPPHRSARMPGGPAAIPPDITGA" FT misc_feature complement(494643..495275) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.1e-39" FT misc_feature complement(495345..495524) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.8e-17" FT misc_feature complement(495390..495482) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(495420..495485) FT /note="Predicted helix-turn-helix motif with score FT 1530.000, SD 4.40 at aa 17-38, sequence FT GSFTKAADTLHMSKTSVTQLVQ" FT CDS 495677..496081 FT /transl_table=11 FT /locus_tag="BB0467" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0432" FT /protein_id="CAE30966.1" FT /translation="MPARNVVFPAGRQALYDRNRYSPAIRSNGFLFVSGQVGSQEDGSP FT KQGLQDQVRQAFDNLNAILAAAGCGFDDVVDVTVFMVDPQSRFEQIWEVVPEYWGPAPH FT PTLTAVGVTWLYGFDFEIKVIAKLPRGSQD" FT misc_feature 495701..496060 FT /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP, FT score 6.4e-30" FT CDS 496261..499632 FT /transl_table=11 FT /locus_tag="BB0468" FT /product="putative molybdopterin oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0431" FT /protein_id="CAE30967.1" FT /translation="MEQVTGYCTLCRSRCGSVNHVENGRLVAVTPLAGHPTGGALCAKG FT RAAPEMMAESHRLLRPLRRTNPRGAADPGWREIEWSEALDEVAARLAVARRRDGAESVA FT FAVTTPSGTPMVDSFEWVERFVRVFGSPNLIYAVEVCGWHKDYAHALTFGRGIGVPDLE FT HTDTMLLWGHNPARTWLAQAARIAAARQRGARVVVVDPNREGSSQQADLWLRVRPGADG FT ALALGAIRHLLHTGRFDHGFVARWSNGPYLVDGASGALLRAADLWPDADPAARVVMLDG FT RPAASGRGADTARAELFGSWTLRLHDGRACEAVTVMHALRVAVERYTPDEVARLAWLDE FT AELAQFNAIFENAPRLSYHSWTGVGQHTNATQTDRAIATLYALTGACDRKGGNLWTVAP FT PYRAVNGYRELLSPVQRAKALGLDELPLGPPSLGWITARDFCRAVLQQDPYPVRTLVSF FT GTNLLVSQAETARNLEALQALDFHVHVDMSMNPTAMNADIVLPANMPWEREALKLGFEI FT TQAAVEHVQLRPRMVEPAGESRADYEIVLELARRLGLRDAFFGADMDACWNHQLAPLGI FT DVQALRRQPEGIRFPQPFAHEKYKTLRDGQPVGFPTHDGRVQIHCAALHDIGQPALPSH FT VEPADTPARHAGAYPLVLSTAKSGWFVHSSHRYVASLRRKSPDPQVYLSTEAARDRGIA FT SGDWVRVRTPYGEVALRAKINADLHANVAIAEFGWWQGCEGLGRADGAIVGPASSNINA FT IMTDRHRDPVSGSVPLRATVCDIVRDDARNRGSWSGAREFVLARKRGIAHDVAEFRLLA FT CDAQALPDFLPGQHVIVSMPGGAVRRAYSLTGPNRAPAHLSIAVRRVRDGDGPAGLMSN FT ALHALDEGARVLLSAPAGVFTPPLRTARPVILMASGIGITPFHGYLEALAQDAGPAPSV FT LLVHACRDGSSHPYGAELKRLAQRIGSVRTLTVYAEPASHDVPGRDYQQRGRLDFAWLS FT PETVAARPLVYLCGSPGFLALCTDALAARGIPRFDIFSETFTSEKRVPDTLAPQPIEIE FT AEQGGFTWDPAAGTLLDAAERAGLSLPSGCRVGQCESCAMHIVSGQVAHLIDFDGSADT FT CLTCQAVPITPLTLRR" FT misc_feature 496261..498165 FT /note="HMMPfam hit to PF00384, DE Molybdopterin FT oxidoreductase, score 1.4e-17" FT misc_feature 497389..497421 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 498211..498579 FT /note="HMMPfam hit to PF01568, DE Molydopterin dinucleotide FT binding domain, score 5.1e-14" FT misc_feature 498634..498936 FT /note="HMMPfam hit to PF00970, DE Oxidoreductase FT FAD-binding domain, score 1.3e-15" FT misc_feature 498952..499305 FT /note="HMMPfam hit to PF00175, DE Oxidoreductase FT NAD-binding domain, score 2.1e-08" FT misc_feature 499405..499611 FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 9e-05" FT CDS 499663..501126 FT /transl_table=11 FT /locus_tag="BB0469" FT /product="short-chain fatty acids transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0430" FT /protein_id="CAE30968.1" FT /translation="MPNNHLTAAAPAQGREAIASPMERFSQAMVAWAEKWFPDAYVFVV FT VACAVVALGAILHGGDPLAVSKAFGEGFWSIIPFTMQMAMVAITGYVLALSPPVARLLR FT ALARVPSTPRGAVVFIGTLSILLSLVNWGLSLIFSGLLVREMARRNDLRLDYRAAGAAG FT YLGLGCGFTLGMSSSAAQLQATPASIPASLMPITGVIGFSETILTWQNLVVVVLVTVVS FT GLVCYFTAPSPERSLTAQDLGVDLTEPEAQAAQRQRPGDYLEFSPWLTVAVVGLASGWL FT YLTFRSGNPFITMSQLNTYNFVFLLLGLLLHWRPRSFLESFGRAMPSISGVMLQFPFYG FT GIGYVLTKVANVQGHTLSDAIAHWFVSLAHDSSVFSILVSIYSAFLGFFIPSAGGKWVI FT EAPYIMDAANQIQAHLGWTVMVYNIAETLPNFINPFWMLPLLGILRLKSKDLVGYTAMQ FT FLVHFPIVVAAGAILMHTFSYVPPVIPGQ" FT misc_feature 499723..501084 FT /note="HMMPfam hit to PF02667, DE Short chain fatty acid FT transporter, score 4.5e-52" FT misc_feature join(499783..499842,499879..499947,500005..500073, FT 500134..500202,500278..500346,500446..500514, FT 500542..500601,500635..500703,500779..500847, FT 501013..501081) FT /note="10 probable transmembrane helices predicted for FT BB0469 by TMHMM2.0 at aa 41-60, 73-95, 115-137, 158-180, FT 206-228, 262-284, 294-313, 325-347, 373-395 and 451-473" FT CDS 501283..501918 FT /transl_table=11 FT /locus_tag="BB0470" FT /product="putative GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0428" FT /protein_id="CAE30969.1" FT /translation="MAPPANLRESVIAQLRSRIVSGAAAPGMIYSVPSLANELGISTTP FT VREALLELSRSGLVEPLRNRGFRVQAITVQDLENHFDVRVMLESGALATLARQGLTDTA FT PLVALADEVAQAVKDQDVGQYIESDRRFHEALVARAGNPLLTRMIMHLRADMRLYGINS FT EEGRVRQRASVDEHYEMIDLAVKQQPEAIVALITRHIESWKPLFAAAL" FT misc_feature 501283..501390 FT /note="Signal peptide predicted for BB0470 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.725) with cleavage site FT probability 0.724 between residues 36 and 37" FT misc_feature 501313..501489 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 2e-08" FT CDS complement(501948..502385) FT /transl_table=11 FT /locus_tag="BB0471" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0427" FT /protein_id="CAE30970.1" FT /translation="MKRLKKALARVANACLGVLPPATGGTRPDGHSRHQPGTHAAILSP FT WRVYRIYARPGRLVLRNDQGRIHDLGVMTGVEPHLAYRLFARGLKGQGFASRTLLLDDI FT ARRIEGGEISDELLALAECTVEPGVDLDRGTHTDVSMKLAR" FT misc_feature complement(502314..502385) FT /note="Signal peptide predicted for BB0471 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.966) with cleavage site FT probability 0.931 between residues 24 and 25" FT CDS 503887..504090 FT /transl_table=11 FT /gene="cspA" FT /locus_tag="BB0472" FT /product="cold shock protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0426" FT /protein_id="CAE30971.1" FT /translation="MQTGIVKWFNDEKGFGFIMPENGGPDLFAHYSEIQGEGHKALVEQ FT QRVSYVQGHGPKGPMATKITPL" FT misc_feature 503887..504084 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00313, DE 'Cold-shock' DNA-binding FT domain, score 5.2e-30" FT misc_feature 503929..503988 FT /note="PS00352 'Cold-shock' DNA-binding domain signature." FT CDS 504267..505172 FT /transl_table=11 FT /locus_tag="BB0473" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0425" FT /protein_id="CAE30972.1" FT /translation="MELRQLRYFVETAHRRSITKAASALHIVQPALTAQIKALEDELGI FT QLLERSARGVSLTVEGEAVLRDAVSVLRAVDDLKRRHGVAARPGRAVKIGIPNGMTRTF FT AGQLIERARQQCSFDIELIEGMSGHLLEWLKSGRLDIAVLFASQPLRQLEVRRLTADSI FT DLVGPPGALDAQRPVAFRDLPQYPLILPNAKHGLTRHIQAQARALGVELLHHTTLDSIA FT EIKHLVSQGVGYTLLAPMVYRPEMEQGLLSATPVRDPALTRELVTATRRLHEAGDDIAQ FT VRALVHEICGARQDPVAAPG" FT misc_feature 504273..504452 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.2e-26" FT misc_feature 504312..504377 FT /note="Predicted helix-turn-helix motif with score FT 1219.000, SD 3.34 at aa 16-37, sequence FT RSITKAASALHIVQPALTAQIK" FT misc_feature 504315..504407 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 504519..505139 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.9e-30" FT CDS complement(505198..506172) FT /transl_table=11 FT /locus_tag="BB0474" FT /product="putative exported protein" FT /protein_id="CAE30973.1" FT /translation="MHRRTLLQGMLAGAAGIGLGLPARAAQYPDRALQWIVPYPPGGAT FT DSVARAIATSMGEQLGQPVVIVNRPGGATNIGTEAAIRAAPDGYTLLLAVPPLVVNPAL FT YPQLSYQPLRDTQAVGLVALNPNVLVVPADSPWRTPQQLFEAAQAKPDTITIGSPGIGT FT VPHLVSLLIGQELNVRVVPVPYKGSAALMPDLVSGRVNAAMDNLFAQVASVRSGRVRAL FT ATLGDKRSPLLPDVPSMTELGLSKLSGMGWIGMVAHSGTEPARIARLEQAVLRAAREPD FT IASRLEAMGLMVVPEGREAFQQRLSTEAELWQGTVRRAGVTAA" FT misc_feature complement(505210..506031) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1e-82" FT misc_feature complement(506098..506172) FT /note="Signal peptide predicted for BB0474 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.990 between residues 25 and 26" FT CDS complement(506183..507772) FT /transl_table=11 FT /locus_tag="BB0475" FT /product="putative sulfatase" FT /protein_id="CAE30974.1" FT /translation="MPQTKQPNFLFLMADQLTAFALRMYGNGVCRTPNLDRLAARSTRF FT ANMYCNFPLCAPSRVAMLTGRLPSSVGVYDNASEFSAEVPTFLHHLALAGYSTILSGKM FT HFVGPEQHHGFQERLTTDIYPSDFGWTPDWREEIPIAPTGMNMRSVIEAGECRRSMQID FT YDDDVVYRGVQKIYDLGRLHRDRPFFLAVSMTHPHNPYVSTREFLDLYRPEDIDMPAVP FT PIPFAQQDPHSQRLWYMFRQDEYDVSDAHVRAARHAYYAMVSYVDAQVGRMLDALQAMD FT LDESTVVVFTADHGDMLGERGLWYKWVHFDPAVRIPLLISAPGRTRPAVRHELASLVDI FT FPTMLELAGVSVPDDGASPPPDGRSLAQGLGVSQDEPTGVVYGEMNGEGAHAPCLAVRQ FT GWWKLVVAEGDPPLLFNLQDDPHELRNLAGQPATRDIERQLTALVQARWDARRLHQDIL FT HSQARRRLVQQSRLQGDFPAWDYQPFTDASRQYVRAGAQSSPALVKGKLRYPPVAPVAP FT QHPRPARSNLPE" FT misc_feature complement(506510..507754) FT /note="HMMPfam hit to PF00884, DE Sulfatase, score 2.9e-46" FT misc_feature complement(507578..507616) FT /note="PS00523 Sulfatases signature 1." FT CDS complement(507780..508820) FT /transl_table=11 FT /locus_tag="BB0476" FT /product="conserved hypothetical protein" FT /protein_id="CAE30975.1" FT /translation="MEAAMEKKPGGETPVLRADAPDAARRRWLHGAAALLGTLPLAGLA FT RADALTQRQLNLVVPFVPGGPVDIAGRVVGQELGQQLGTPVVVSNKGGAGGNIGAEEVS FT RSQPDGGTLLLALDSILTVNPYFYGKGATQGVQTLAPVGMVGELSSVLVVNARSPIKSV FT ADFLEHGRRNNLTAGSGGNATAGHLYAEQLKRDFGVQLTHVPYKGLSPAVQDLLAGNID FT CIVALIPGVLPHIRAGSLRALGLTSARPQVLLPELKPLSELGLPGFTGASWLALMAPEG FT VPPGVADKLSAGLSQALRNPAVVERLHSAGIDPLYADAPTVRARIAREGAQWSTLLASI FT QPAPQR" FT misc_feature complement(507795..508613) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.5e-76" FT CDS 509096..510103 FT /transl_table=11 FT /locus_tag="BB0477" FT /product="conserved hypothetical protein" FT /protein_id="CAE30976.1" FT /translation="MMPNPTGRQMLRRIFSKAAAAAALLGMAMAPVAGHANGQPTRIVV FT GFAAGGAADILARTFAEWMHAHLGDTYIVENRPGASARIAVDYVKRAAPDGKTILISSP FT SPITIFPLTYKKLNYDPDTDLIPIAHLVDAPQALTVSASGPIHSMQDYLAGIKKDPRAA FT SVGMVTLGSPTHFSLLSLGKSIDVPLTPVAYKGVGPMLSDVIGGALPACINPLGGQMEL FT YRAGKIRFLGVTGTRRSAMLPDVPTMKEAGADGFEMASGWFAAFVPAGTPKETVEKLEK FT AMMAAAKDPVIREKLQELGLETTGWSGDELKQYIHAQRDYWRGIVNESGFSADS" FT misc_feature 509096..509203 FT /note="Signal peptide predicted for BB0477 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.833 between residues 36 and 37" FT misc_feature 509261..510088 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.3e-63" FT CDS 510163..511812 FT /transl_table=11 FT /locus_tag="BB0478" FT /product="conserved hypothetical protein" FT /protein_id="CAE30977.1" FT /translation="MTLSPTTIFPARCIHTMNATQPRATHVAVREGRILDVGDASLREA FT WPDAVVDSRFSDKVLLPGLIEGHSHLLEGGMWRFVYVGYYDRRGPDGRVWPGLKSYEAV FT IERLRAAEALMPDAQAPLLAWGFDPIHFGGQRMTTCHLDQVSKTRRIVVLHASVHLLNV FT NTAMLRQADIHAGLRIDGIVRAADGTPTGELQEFAAMFMVFKHIGNVFFDAGQSEEGIR FT NFAKIAQQAGVTTATDLSHALADDMVDNLVRVTGEDDFPLRLVAAYSPMRDMNGRSVDR FT VVRATQRNTAKLHFGLVKLVIDGSIQGYTARVRWPGYHNGAPNGMWIIAPQQLRELLME FT YHKAGLTIHIHTNGDEATEVAMDALESVLAEYPRWDHRHTLQHCQMADAAQFRRMARLG FT MCANLFANHLYFWGDAHYTDTLGPARAFRMNAAKTALQAGVPISLHSDAPITPIGPLFT FT AWCAVNRVTAGGRILGSQERIPVMDALHAMTLGAAYTLKLDHLIGSIEVGKLADFAVLE FT ADPLEVAPQDLAGIGIWGTVLGGRSFPAPQLS" FT misc_feature 510532..510579 FT /note="PS00225 Crystallins beta and gamma 'Greek key' motif FT signature." FT misc_feature 510844..511782 FT /note="HMMPfam hit to PF01685, DE Chlorohydrolase, score FT 0.0014" FT CDS 511809..512819 FT /transl_table=11 FT /locus_tag="BB0479" FT /product="hypothetical protein" FT /protein_id="CAE30978.1" FT /translation="MTAPGSMPLTVIGGFLGAGKTTLLNYLLKVQHSERVLVMVNDFGS FT INIDAELLDQGRHDRPGVVRLQNGCVCCSIGGDLMQAFLQVMSMPDRPDRIIVEASGVA FT DPTRIAQIGRVSGGLSDEGVITLVDASAVRTLAADKYVGDIVRQQILSADIVLLNKLDL FT SSDAEIVETRAWLRDLAPRTRVVSCIHGEVDAVSVLGIGAGKVAPDAAGGPVDVPVPDL FT RRASTRHADTFHSSTLATAHRFDRRRIEYALDALPQTVLRGKGFVELEGEATPALLQLC FT GSRWTLDPVSTPAPPAGTHLVFIATGGRGVPRFDAPSHFEQALASRDAASADTSN" FT misc_feature 511824..512780 FT /note="HMMPfam hit to PF02492, DE Cobalamin synthesis FT protein/P47K, score 1.7e-55" FT misc_feature 511848..511871 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(512946..514190) FT /transl_table=11 FT /locus_tag="BB0480" FT /product="conserved hypothetical protein" FT /protein_id="CAE30979.1" FT /translation="MRLLVLTYGTEGDTRPLAALCRALTDAGHEVLLLADGNTLASARR FT LAVPHAALSGNIQESLADLVSQGKGVNATVAALSGIANAQAESWMRQAAEAAAGCDGMI FT VAGLAAFVGLSIADRLGIPAIGAGMIPISPTSAFGSPFLPAGKLPSALNRGSHHLVNWL FT LWLSFRKSVNRARRQVLDQGPRHRLWTGHPMLYGVSPALLPPPADWPANARLCGQWLEP FT ADGAWSPPAELEDFLKAGEPPVYVGFGSMTGFDREALLRAVFAGLEGERILFHPGWSGL FT PDVRLPQDCLVIGNTPHGWLLPRTSLAMHHGGSGTAHSACRAGVPSVVLPFAGDQFFWA FT RQLARLGVADAPISTRQLDAGAIKAAVRFARLPATRSSAAALAQAMSREDGTATAVREI FT ESALASNKGSHAWTR" FT CDS complement(514187..514810) FT /transl_table=11 FT /locus_tag="BB0481" FT /product="putative TetR-family transcriptional regulator" FT /protein_id="CAE30980.1" FT /translation="MPPPPGLRARKRQSVRDTITTVAGQLFRQDGYEAVTMERVAQAAD FT VARGTLYNHFPTKDHVLAAWVHQELARDLGSLPVAALASDEFAAGAAQLLGLSARWCAA FT HRDLLPAYLRFCFLDMQSPEAAHGGDGLLALYARMIGNSQASGGIRADLPAPYLATMFH FT HLYLGALMRWLADPALSLDTEFSCALGLFLQGCAARSAAKGDGS" FT misc_feature complement(514616..514756) FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 1e-14" FT misc_feature complement(514628..514720) FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT misc_feature complement(514643..514708) FT /note="Predicted helix-turn-helix motif with score FT 1644.000, SD 4.79 at aa 35-56, sequence FT VTMERVAQAADVARGTLYNHFP" FT CDS complement(515442..516023) FT /transl_table=11 FT /locus_tag="BB0482" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE30981.1" FT /translation="MAKRVFFSFHYQDVIDFRANVVRNHWLTKPDREAAGYFDASVWET FT AKKQGEVALKRLINGALENTSNNCILVGSQTYMRPWVRYEIMKSFRRGNHLLAVHVNSV FT KGKDGRTKPVGPNPFEHLGVTYSEDGKTGTLWEKNGGTWSKYERIDGSANFAVQAGPEH FT RGKGFNLSRFYRIYDWVANDGYNNFSGWLK" FT misc_feature 515442..530604 FT /note="Low % GC region. Contains several putative FT plasmid-related genes. Unique relative to pertussis. In FT parapertussis it is replaced by another phage-related FT region" FT CDS complement(516036..517469) FT /transl_table=11 FT /locus_tag="BB0483" FT /product="conserved hypothetical protein" FT /note="Similar to Pediococcus pentosaceus UsG protein usG FT SWALL:Q9F3X3 (EMBL:AJ276891) (477 aa) fasta scores: E(): FT 1.7e-64, 43.08% id in 434 aa" FT /protein_id="CAE30982.1" FT /translation="MKREYLRLVDSLSKELAEGNLAIFAGAGLSRAAGFVDWKSLLKPI FT ADDLDLDVEKEWDLVTLAQYHANANATNRSKLNQMLVTEFSSGVAPTENHEILTRLPIQ FT TYWTTNYDKLIESSLERNGKVPDVKYTNKQLATTRSKRDAVVYKMHGDVDHASEAVLIR FT DDYERYHVKMQPFITALSGDLIAKTFLFLGFSFTDPNLEYILSRVRIQFAQDQRQHYCI FT LRKASRMEGEGQADFEYRQRKEDLFKHELLRVGIKAVYVDEFSEITDILREIEHRHKRK FT TIFISGAAHDYSPWTKTEAEQFVYSLSKAISKEQYRVISGFGLGVGSAVITGVLEQTIM FT NGGRLDSDQLVLRPFPQSQSGTRPLPELWTEYRRNMLAHAGIALFLFGNKLDKTGRVVP FT SSGMREEFEIAIANGLFVIPVGITGSISAELWNEVIQSYDESKFEHGKKIGPLLHELGA FT TNTDLARAHDIILTLLSLI" FT CDS complement(517497..517994) FT /transl_table=11 FT /locus_tag="BB0484" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE30983.1" FT /translation="MPIRQSDLLAEGKRRSTQGRFTKSFGQPTAFLSHSHADATLALGL FT QEMLKNQGWDVYIDWQDQTMPEKPDTETAFNIKAAIVRADWFLFLATQNSMASRWCPWE FT IGFADGRKPHERIVIVPTQDSYGRFYGNEYLNLYNKIDVASGTLGLALYDTRGSGKWVR FT TL" FT CDS complement(518018..518212) FT /transl_table=11 FT /locus_tag="BB0484A" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE30984.1" FT /translation="MTKKFRIWGLVQDRLSPVFVKHAQLCKPAMTRRLQRLVHKLAAFD FT QEQLLREKFQNEGSFRKQF" FT CDS complement(518209..518442) FT /transl_table=11 FT /locus_tag="BB0485" FT /product="plasmid-related protein" FT /note="Similar to Rhizobium meliloti hypothetical 12.7 kDa FT protein SWALL:Q91UM4 (EMBL:AJ304453) (110 aa) fasta scores: FT E(): 3.3e-10, 65.45% id in 55 aa, and to Escherichia coli FT hypothetical 13.1 kDa protein SWALL:Q91UU7 (EMBL:AJ297913) FT (117 aa) fasta scores: E(): 2.1e-07, 47.22% id in 72 aa" FT /protein_id="CAE30985.1" FT /translation="MAGTGKCRQQPHKTISDTERSRRQSAVNYARASVGLEGFSLSEAD FT EAHAQRFVDGQISLQEFVQPRADALALPTSSS" FT CDS complement(518550..518783) FT /transl_table=11 FT /locus_tag="BB0486" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE30986.1" FT /translation="MLSSGSRVKGLVRPAAHRARTRPLDAAGAPHAMPGAGVPGQGPAT FT PAPEAPAGEGGESREAKPLWNLRLVRSRYCGP" FT CDS complement(518815..519105) FT /transl_table=11 FT /locus_tag="BB0487" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE30987.1" FT /translation="MVGDVHVASASASPSARPFHLWPHISPRYAWATPSVASRARSCRT FT GRGGRPRRLRLVPPPGRQAAWLPEASRVKASPGILTRSLRCASGCGFRSRP" FT CDS complement(519095..520147) FT /transl_table=11 FT /gene="virB6" FT /locus_tag="BB0488" FT /product="plasmid-related membrane protein" FT /note="Similar to Rhizobium meliloti VirB6 protein FT SWALL:Q91UR2 (EMBL:AJ304453) (360 aa) fasta scores: E(): FT 2.9e-40, 46.51% id in 359 aa, and to Escherichia coli VirB6 FT protein SWALL:Q91UX1 (EMBL:AJ297913) (360 aa) fasta scores: FT E(): 1.9e-37, 45.4% id in 359 aa" FT /protein_id="CAE30988.1" FT /translation="MGFALFQWIGSSVEAMLNTFVSETASNVILGFQMLMLTGVTLYIT FT LTGYAISAGAVEAPFQTFIKQCMKILIITAFCMTADSYTATVVSAIQGLETGLADIMST FT SSAQATSIYQVLDNSAGKGLNVAYDMLGKVAKREFYELGHMFWDALNALMMAIAVFLIH FT LPAAATIIMAKLGLGIMLGLGPLFIAALIFPVTAKWFDKWFEQALAYILEIAITMVIVS FT VGVALFKALFDRVISTTTDNPINSFVQIIVLALIIFFAQRKTSGLGARLAGGIAFDAVT FT FRSMAQDIGNVVNPKTTRRDMQSGMMVTAGRTNHMIAGNTMWNPAYRQHVLQNMGKNWG FT PATGGSVNGR" FT misc_feature complement(join(519365..519418,519452..519520, FT 519557..519625,519644..519712,519866..519934, FT 519995..520063)) FT /note="6 probable transmembrane helices predicted for FT BB0488 by TMHMM2.0 at aa 29-51, 72-94, 146-168, 175-197, FT 210-232 and 244-261" FT CDS complement(520149..520409) FT /transl_table=11 FT /locus_tag="BB0489" FT /product="plasmid-related lipoprotein" FT /note="Similar to Rhizobium meliloti Eex protein FT SWALL:Q91UR1 (EMBL:AJ304453) (93 aa) fasta scores: E(): FT 4.7e-10, 45.94% id in 74 aa, and to Escherichia coli FT hypothetical 10.3 kDa protein SWALL:Q91UX2 (EMBL:AJ297913) FT (98 aa) fasta scores: E(): 5.8e-10, 42.85% id in 91 aa" FT /protein_id="CAE30989.1" FT /translation="MKNILFPFFIALTLAACGENTPVQTVDWYKAHAPERNAMIAKCEA FT SPGEFAASANCINAKTAANHLAVDKRGYFDLTPINPLKGGQ" FT misc_feature complement(520335..520409) FT /note="Signal peptide predicted for BB0489 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.494 between residues 25 and 26" FT misc_feature complement(520359..520391) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(520406..520852) FT /transl_table=11 FT /locus_tag="BB0490" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE30990.1" FT /translation="MAPFYAITLVPVVTLCLAIYRFWACARRLSPEYYRELLRRAPLMR FT TLDVVAIGMAAFTAYYAAMGWFGFTLPFIDEEPLPPWMNIILSAVTSIACIGIVWTNAP FT NRFTQPTWGGMRESVVRTLVALRIIEAAEVAHALDIINAREAHK" FT misc_feature complement(join(520550..520618,520646..520714, FT 520775..520843)) FT /note="3 probable transmembrane helices predicted for FT BB0490 by TMHMM2.0 at aa 4-26, 47-69 and 79-101" FT CDS complement(520863..521588) FT /transl_table=11 FT /gene="virB5" FT /locus_tag="BB0491" FT /product="plasmid-related exported protein" FT /note="Similar to Escherichia coli VirB5 protein FT SWALL:Q91UX3 (EMBL:AJ297913) (239 aa) fasta scores: E(): FT 1.1e-50, 67.71% id in 223 aa, and to Rhizobium meliloti FT VirB5 protein SWALL:Q91UQ9 (EMBL:AJ304453) (242 aa) fasta FT scores: E(): 4.6e-43, 59.05% id in 232 aa" FT /protein_id="CAE30991.1" FT /translation="MKKLSASCIMAVGIAASSAAFAQIPVTDGASIAKSVENQIETMAK FT WKMQYDQMVSQIDQMKQQYAAVTGARGMGELFNNPQLRDYLAQDWQGVYDSVKSGGYAG FT LSGRAESIYENNKVYDACTGFASNEQRANCEAQAVKGAQDKAFALDAYDAAKNRLSQID FT QLMQQINQTQDPKAIAELQGRIAVEQAMIQNEQTKLQMYQMVAAAEDRLQQQRRKEINA FT KIVDQRGYPTLQVFNPLAR" FT misc_feature complement(521523..521588) FT /note="Signal peptide predicted for BB0491 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 22 and 23" FT CDS complement(521846..522124) FT /transl_table=11 FT /locus_tag="BB0492" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE30992.1" FT /translation="MRKKDHKMALRYDALQDYCDDPARTGDVQVILYAHYWKGFALAVL FT DGTTEHPVMDDKGRPYRFRTVEMALAELANISYLSDRIIIDRRMWWP" FT CDS complement(522129..523124) FT /transl_table=11 FT /gene="virD2" FT /locus_tag="BB0493" FT /product="plasmid-related protein" FT /note="Similar to Escherichia coli VirD2 protein FT SWALL:Q91UW0 (EMBL:AJ297913) (364 aa) fasta scores: E(): FT 1.4e-49, 53.65% id in 315 aa, and to Rhizobium meliloti FT VirD2 protein SWALL:Q91US6 (EMBL:AJ304453) (352 aa) fasta FT scores: E(): 2.1e-49, 50.13% id in 359 aa" FT /protein_id="CAE30993.1" FT /translation="MSLVIDGILKDWGERIYTKPVTSQGVKRTVTRSRTSPPSTPLLLT FT GSARVRDKLMLTTRKAPEVMVKISGGGKGIAQVKAHLDYISRNGLVALENEDGEIILGR FT EAVQDVRDEWKSGQYGLPDNGSRRETFNIVLSMPPGTDRRAVNDAIRAFAKTEFGANHA FT YVFAIHDDEAHPHGHLCVKALGLDGSRLNPRKADLQRWRERFAEALREQGIKANATPRR FT ARSNTRTTVKQATRHAAKRGKSTKAAEREQRGLSGVSCAIRNGYGHIAKALAAGDIEDK FT SLALEIVRFLDPSQDRTLQVPQRSQSSAEVTKDAQQLDKTNHPGKGDLSR" FT CDS complement(523121..523660) FT /transl_table=11 FT /locus_tag="BB0494" FT /product="hypothetical 20.3 kDa protein" FT /product="plasmid-related protein" FT /note="Similar to Escherichia coli hypothetical 20.3 kDa FT protein SWALL:Q91UV9 (EMBL:AJ297913) (180 aa) fasta scores: FT E(): 2.2e-19, 41.76% id in 170 aa, and to Rhizobium FT meliloti hypothetical 22.9 kDa protein SWALL:Q91US7 FT (EMBL:AJ304453) (201 aa) fasta scores: E(): 4e-17, 36.93% FT id in 176 aa" FT /protein_id="CAE30994.1" FT /translation="MTRKTTLSIRLDGDLKLRWQALCLRQGSTPSDGLRQIIVRLLNGS FT ATDTSPTPSTHEQPDTSRPRLELRLTETEYARIEALALQQGMSANRWVIHLIRANLSGE FT PQFGMTELRTLGESNSRLLAIGRNLNQIAGHMNAGRALETVVTAERIDTLTRHIKTHTA FT RVADIMRANIDRWRLE" FT CDS complement(523657..524667) FT /transl_table=11 FT /locus_tag="BB0495" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE30995.1" FT /translation="MSRQRTINDQIWRSNRLSGCTVEDRYALFYFLTSPFSNVIGAYEI FT VIRVAASEMGWDPDSQLMPVMRRLIDAGILDFDPQANYIWIKDWWNHNSAKMAVATTLR FT KKTLEQIAALPQGWRDAYVNDFIDRLPTEDPLRNTVAKALGYGPYRLSTPYAGPDDGRT FT SIPAEAKDIHRSQSISNGHTPATAYLQGMDRGPDNTTTNTNPIYNPTTTTRTDDGLQYP FT TALVPAEKLSIQNLLTDVQSVDAQALLDELDGAIKTPGTIRKTKVAYFKGILERHRTGG FT FVPSAGIPIATKRERLAATQDMSRASESAPLSKAESQARLQEIKAQLELHTRMPK" FT CDS 525357..525713 FT /transl_table=11 FT /locus_tag="BB0496" FT /product="hypothetical protein" FT /note="Similar to the N-terminal regions of Escherichia FT coli O157:H7 O218 protein or PphB or z4044 or ecs3590 FT SWALL:Q9S6P9 (EMBL:AJ006210) (218 aa) fasta scores: E(): FT 2.6e-09, 42.15% id in 102 aa, and to Escherichia coli FT O157:H7 PrpB SWALL:Q9XDI3 (EMBL:AF054420) (218 aa) fasta FT scores: E(): 2.6e-09, 42.15% id in 102 aa" FT /protein_id="CAE30996.1" FT /translation="MTSGKVRVQRFQLNANGRDFAVGDIHGHFDRLEVALAAVRFSPEK FT DRLFSVGDLVDRGPESADVLKWLERPWFHPICGNHELMTWRRAMGNPIPDVDHRLHGGE FT WLDACVSPKQPDFC" FT CDS complement(525735..528851) FT /transl_table=11 FT /locus_tag="BB0497" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE30997.1" FT /translation="MWQVPDVDPLRSITSIHITAARNPQAGGNLALGLLATLYIQPHSA FT AQSSSRPPPRPRSAELNNSKRPRHLTWAIAFLFQSDYDYAHYEGEAMSQYLLSFARQNL FT DGRTDAYLVLLWCIYQANQDKGRYSDHIKAHITAAADQLLGRNYQRIAARFKKVLDSKP FT ELDRIPPSGLGTLGSLRVKNFRGFGEIGPDDLGTFIRFSKLKNIFYAPNGGGKSSLCEA FT LEIGTTGDIKEAARRKTKINQYIARGDAKSKLTLLGADGLPVKQSISWSGCFIDRNRLQ FT EFSLLGSKDTGSAERDVLATLFGLEELQEVISRFVRPESFSLKAFMRADQAGELDRMER FT TRADLSLLRRKHRADLQKSIYETCRLLGLRADQGFDVRPKVLRLRDTIEMHIRSAERLR FT TSKAPLAIPIKQVKRTCAIAQRLLDRRADIETVFLRRASDVNYRDFFQALEAIEHLHVG FT KACPACLTPLDQVVANPFERAREQITALYALDSLKQSKLRNDALITLWASRVATAISAV FT KNNERADVPCQVEMSELEAVLAKFHAATDRSEVAPSVLDSILTLYTEKSAQIESYLDAC FT ERRRQEVDQAEAQAARLEARVKQLKEIDESLKQQFEEKKLAEREFKIVNAEMAGLIKRK FT AALLNNAGENSRFNKLLEDLEAEYRTLYRSLLEYKLELEKTRINGIEAKAAEYYRAINH FT HDDDHEQIASLRFDRQGDSYRIRITNLDGSSLDAFAVLSEGHLRALGLSILLAMAEKNN FT FPLIVFDDVVNAIDTDHRSNIIDLLFSDAYLRRIQMVVTTHDRLFWERFCIISDRHPQC FT DQHASRVLSYTNRGIVTIDHEGGFQKKVYIALSVFDIRQALLYCRIWFESMVLEFCIEN FT RVTVTANFNKSHLKKSMYLQVSLEHTFSLVEPFIDYDLSHFNIIKNDLVNWGGQNQEHH FT AFDEGSLNFVHSKTSGEVLRIYDAIRFLECQLFPARKKESGLRHLAEVKEKIERSQRKA FT VALAKAPADVQKEHKAALSALEQRAIELGQELEFIEQCLASTAQRDKPQ" FT misc_feature complement(528201..528224) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 529049..529693 FT /transl_table=11 FT /locus_tag="BB0498" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE30998.1" FT /translation="MSSLIFFTDATQIVVATDTLAVTPDGKPMLFSSKAHHLPHLRTII FT AGTGMGMFAGDWAMEVNNRMILEGIMNLDYHAPGALQARWAKYRQDFALPESSTTTVYH FT FGLSEEDQSVVAFAYRSTSGFQSERLPQGFGIKPECPLPEGNNILEIIPQMMNLQRKIQ FT SKVAPIERIYIGGEVVVMHLTSSSFSVYHPYSFPERPQDMKSIFRRHASGA" FT CDS complement(529856..530212) FT /transl_table=11 FT /locus_tag="BB0499" FT /product="hypothetical protein" FT /protein_id="CAE30999.1" FT /translation="MFGNKMEPATEHQVTDTGKKFLVANGANTMAGQDAFCTGKYTVVE FT VSNFTEPSDMMGVKLSQVNYRYKVEGADDWAKSESMRANYKNFAEQTQGDIQGKAAVIL FT TTDGWMHERLFKRG" FT misc_feature complement(530009..530074) FT /note="Predicted helix-turn-helix motif with score FT 1001.000, SD 2.60 at aa 47-68, sequence FT SNFTEPSDMMGVKLSQVNYRYK" FT CDS complement(530239..530604) FT /transl_table=11 FT /locus_tag="BB0500" FT /product="putative integrase" FT /note="Similar to Haemophilus influenzae putative FT integrase/recombinase Hi1572 SWALL:YF72_HAEIN FT (SWALL:P46495) (366 aa) fasta scores: E(): 0.002, 31.89% id FT in 116 aa, and to Ralstonia solanacearum probable FT integrase/recombinase protein Rsc1655 or Rs03938 FT SWALL:Q8XYV1 (EMBL:AL646065) (334 aa) fasta scores: E(): FT 0.023, 39.24% id in 79 aa" FT /protein_id="CAE31000.1" FT /translation="MATIVKTSSGTWKALIRKTGWPATTKTFRTKRDAEDWARRTEDEM FT VRGVYIQRAPAERMTVEATLTRYLKEVTPTKRESTQVGEHKKAQVIIRHLGKYSLAALN FT AAVRARSAPTRWSMPGC" FT tRNA complement(530739..530823) FT /note="tRNA Leu anticodon CAA, Cove score 75.82" FT CDS 530986..532893 FT /transl_table=11 FT /gene="htpG" FT /locus_tag="BB0501" FT /product="heat shock protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0074" FT /protein_id="CAE31001.1" FT /translation="MSQTTTNSASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNA FT SDACDKLRFEAIDQPGLLDGDGELAIRVDYDKAARTITISDNGIGLSRDEAVANLGTIA FT RSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADKVTVLSRRAGLAANEAIRWESD FT GQGEFSIAPAEKAGRGTDVVLHLRADEDELLNGWKLREILRRYSDHISLPIRMAKEDWD FT AEKGEQVKGDELETVNQANALWTRNKSDITDEQYREFYKTVSHDYDDPLAWTHNRVEGR FT SEYTQLLYVPKHAPFDLWDRDARRGVKLYVKRVFIMDDAEQLLPSYLRFVRGVIDSADL FT PLNVSREILQESRDVRAIREGSAKRVLSLLEDMAENKAEDYATFWTEFGQVLKEGTGED FT AANRERIARLLRFASTHDGEQAQTVSFADYVGRMKDGQDKIYYVTADTFTAAANSPHLE FT IFRKKGIEVLLLSDRVDEWMLSYLREFDGKSLVSVAKGGLDLAELADEEEKKRQSEVAE FT TFKPLVERLQQALAEQVKEVRVTQRLVDSPACVVVGQNELSPHLLRMLKAAGQEAPEVK FT PVLEINPDHALIARIRDASDAEFGDWAALLLDQALLAEGAQIADPAAFVKRLNGLLLKA FT " FT misc_feature 531076..531105 FT /note="PS00298 Heat shock hsp90 proteins family signature." FT misc_feature 531082..531552 FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 5.8e-12" FT misc_feature 531559..532887 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00183, DE Hsp90 protein, score FT 2.9e-179" FT CDS complement(533184..533804) FT /transl_table=11 FT /locus_tag="BB0502" FT /product="probable glutathione S-transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0075" FT /protein_id="CAE31002.1" FT /translation="MLKIWGRLSSVNVQKVMWAVRELALPHTFIEAGGQFGGLDTPEYR FT RMNPNRKVPLIDDGGFILWESNAIVRYLGARYGEGAISPADPCVRADADRWMDWQTTEW FT QPSMLPAFMGLVRTAPEQRDAAAIEASARQAGKIALMLENALAGRDFIAGPQFSMGDIA FT LGCAAHRWLGLPIERPATPHISAWYRRLMMRPATQGILTLPLA" FT misc_feature complement(533220..533555) FT /note="HMMPfam hit to PF00043, DE Glutathione FT S-transferase, C-terminal domain, score 1e-09" FT misc_feature complement(533580..533801) FT /note="HMMPfam hit to PF02798, DE Glutathione FT S-transferase, N-terminal domain, score 4.6e-07" FT CDS complement(533836..534417) FT /transl_table=11 FT /gene="ampD" FT /locus_tag="BB0503" FT /product="N-acetylmuramoyl-L-alanine amidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0076" FT /protein_id="CAE31003.1" FT /translation="MQRLLLDRHGWLIPGPAVTRAPSPNVNARPAGTQISLLVIHNISL FT PPSQFGGPYVADLFLNRLDYSADPWLERLRGLHVSAHFFIRRDGAIIQFAATEARAWHA FT GVSRFRGRDNCNDFSIGIELEGTDILPYADAQYAMLARLAQVLRARYPLADARGHEHIA FT PGRKTDPGRAFNWVRFGRESGFPRRNLPPV" FT misc_feature complement(533884..534285) FT /note="HMMPfam hit to PF01510, DE FT N-acetylmuramoyl-L-alanine amidase, score 1.2e-44" FT CDS complement(534503..534754) FT /transl_table=11 FT /locus_tag="BB0504" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0077" FT /protein_id="CAE31004.1" FT /translation="MGKLIFWFVVILAVLFIARLAGARAASKRAPRAEPPRPAPDAASQ FT PMVRCAHCGVHLPHSEAVLLGGQTWCSSDHARRGADRG" FT misc_feature complement(534686..534745) FT /note="1 probable transmembrane helix predicted for BB0504 FT by TMHMM2.0 at aa 4-23" FT misc_feature complement(534686..534754) FT /note="Signal peptide predicted for BB0504 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.486 between residues 23 and 24" FT CDS complement(534756..535505) FT /transl_table=11 FT /locus_tag="BB0505" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0078" FT /protein_id="CAE31005.1" FT /translation="MDQASKLTRTGLLGALALHGVALQQAMLGTQHLYIGWALALSAAV FT WLGLVVFWLESLLIRIDGLQLLLLPAAAIVTAIAALFPQAQLVPHANNPWLRAHLLIAL FT AAYGLITIAALHAMLMALLDRHLHRPLDAPAERSIVGRVLDAQPPLLVQERLLFRVIWI FT GFVVLTLAVGSGSVASITLTGKFLPFDHKTIFTLLSWATFGVLLLGRHIRGWRGRVALR FT WTLTGFAFLILAYTGSRFVLEVILHRG" FT misc_feature complement(join(534783..534851,534870..534929, FT 534957..535025,535146..535214,535242..535310, FT 535344..535409,535419..535487)) FT /note="7 probable transmembrane helices predicted for FT BB0505 by TMHMM2.0 at aa 7-29, 33-54, 66-88, 98-120, FT 161-183, 193-212 and 219-241" FT misc_feature complement(535434..535505) FT /note="Signal peptide predicted for BB0505 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.717) with cleavage site FT probability 0.544 between residues 24 and 25" FT CDS 535704..537113 FT /transl_table=11 FT /gene="ffh" FT /locus_tag="BB0506" FT /product="signal recognition particle protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0079" FT /protein_id="CAE31006.1" FT /translation="MLDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVAL FT PVVRDFVARVKEKALGEEVAGSLSPGQALVGVVHKELTSLMGGDLGEHAGELSLATQPP FT AVILMAGLQGAGKTTTTGKLARWLSEGQHVQGGRKTGKKKVLVVSADVYRPAAIEQLKT FT VAAQVGVDFLPSDVSQKPEDIARNAIDHARRHHYDVLIVDTAGRLGIDEAMMREIRALH FT DLVKPIETLFVVDAMQGQDAVNTARAFGDALPLTGVVLTKLDGDARGGAALSVRHVTGK FT PLKFVGVSEKLDGLEPFHPERMAQRVLGMGDIVSLVEQAQKNIDIAEAQKLASKIKSGN FT KFDLNDFRDQLGQVKKLGDMGSLLEKLPAQFQQAAGQLQGGQAEKQLRRTEGILNSMTP FT GERAKPELIKASRKRRIAAGAGVPVQEVNRLLSQFEQMQGMMKQMKKGGMAKMMRAMGG FT MKGLGRFGGMR" FT misc_feature 535704..535964 FT /note="HMMPfam hit to PF02881, DE SRP54-type protein, FT helical bundle domain, score 1.4e-27" FT misc_feature 536007..536633 FT /note="HMMPfam hit to PF00448, DE SRP54-type protein, FT GTPase domain, score 7.2e-109" FT misc_feature 536034..536057 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 536460..536477 FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT misc_feature 536547..536588 FT /note="PS00300 SRP54-type proteins GTP-binding domain FT signature." FT misc_feature 536724..537026 FT /note="HMMPfam hit to PF02978, DE Signal peptide binding FT domain, score 4.4e-40" FT CDS complement(537246..537797) FT /transl_table=11 FT /locus_tag="BB0507" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3689" FT /protein_id="CAE31007.1" FT /translation="MKLQDVTSCCITHAAAAPIIVFAINAFFNAQGRKMGLLNFIKEVG FT EKLFGASEAKAATADELKKELDKHGLSAEGLDISVDGDKVTVKGSAASTEAAEKIVLAL FT GNTVGVAQVDNQLQTAQAAPAAVMYTVQKGDTLWKIAEANYGKGKGAKYPTIFEANKPM FT LSDPDKIYPGQVLRIPPLAE" FT misc_feature complement(537261..537413) FT /note="HMMPfam hit to PF01476, DE LysM domain, score FT 2.2e-14" FT misc_feature complement(537711..537779) FT /note="1 probable transmembrane helix predicted for BB0507 FT by TMHMM2.0 at aa 7-29" FT CDS complement(537837..538037) FT /transl_table=11 FT /locus_tag="BB0508" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3690" FT /protein_id="CAE31008.1" FT /translation="MHITLNGEAREFPLQTTVVELLETLGYQGKRVAVERNGEIVPKSK FT HGDTLLDDGDQIEIVVAVGGG" FT misc_feature complement(537843..538034) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02597, DE ThiS family, score FT 3.6e-16" FT CDS complement(538048..538995) FT /transl_table=11 FT /locus_tag="BB0509" FT /product="prolyl iminopeptidase" FT /EC_number="3.4.11.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3691" FT /protein_id="CAE31009.1" FT /translation="MLYPPIEPYRQGTLDTGDGHQIYWELCGNPQGKPAVFLHGGPGSG FT CSPVHRQLFDPRRYNVLLFDQRGCGRSLPHASLENNTTWHLVADIERLRAEVMGAERWL FT VFGGSWGSTLALAYAQTHPQRASELVVRGIFGLRRAEVQWFYQEGASWLFPDRWEEYVA FT PIPPEERGDLIAAYHRRLTGDDPAEQLRAAKAWSRWEDHTITLLPSPRHQQSHAADRAA FT LAFARIENHYFVHAGFMEEGQLIRDAHKLHGIPGTIVQGRYDVCTPARTAWDLHRAWPQ FT AQFHLIPDAGHAFDEPGILARLIQATDTYAANPA" FT misc_feature complement(538054..538821) FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 2.3e-20" FT misc_feature complement(538384..538410) FT /note="PS00037 Myb DNA-binding domain repeat signature 1." FT CDS complement(538996..539826) FT /transl_table=11 FT /locus_tag="BB0510" FT /product="putative methyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3692" FT /protein_id="CAE31010.1" FT /translation="MMNYTCSQRPAGRGRGPTTIQPMNTNTPAHPPEGAPLSEATQAAL FT ASAEHAPDSPGATHIRSFVHRRGHITQRQRDALEQLMGKWSVPYAPRPLDMAATFGRQA FT PTILEIGFGMGETTEKIALARPGDNFLGVEVFNAGVGSLLHRIEESAIANLRIVQHDAV FT EVVRDMIAPDSLAGVHVYFPDPWPKKRHHKRRLLQPPFVALLASRLAPGGYLHCATDWE FT DYAVQMLEVLGGEPLLRNTADGYAPRPDFRPQTKFETRGLRLGHGVWDLMFKRA" FT misc_feature complement(539002..539574) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02390, DE Putative FT methyltransferase, score 1.3e-74" FT CDS 539853..540752 FT /transl_table=11 FT /locus_tag="BB0511" FT /product="LysR family regulatoy protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3693" FT /protein_id="CAE31011.1" FT /translation="MNPARFDLVTLALFVAVARQGSISAGARQSHLAVGAASKRISDLE FT NALGTPLLYRTAAGVELTDAGQACLAHALRVLQEVEHMAGVLSDFAQGVRGQVRIAANT FT SSITQFLPEDLAGFMQRHPAVRIHLEEQNSSDIVTAVAENRADVGIFADRTPAAGLTTV FT PYRLDELVLITPPRHPLAARAQVAFADTLDCDYVGLPPATSLATRLADESARLDKSIRL FT RIQVRSFDAICRMVVATGGVGILPRIAAEPHARSMQVRLIPLSDDWAQRWLLLGVRDLD FT SLPVAARLLVRSLAEGAA" FT misc_feature 539853..539927 FT /note="Signal peptide predicted for BB0511 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.673) with cleavage site FT probability 0.179 between residues 25 and 26" FT misc_feature 539874..540053 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.9e-16" FT misc_feature 539916..540008 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 540036..540071 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT misc_feature 540123..540746 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 9.5e-37" FT CDS 540796..542061 FT /transl_table=11 FT /locus_tag="BB0512" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3694" FT /protein_id="CAE31012.1" FT /translation="MPIPAARRLPAHCFSISSHKYGDDMAGQILAGIRVLELGQLIAGP FT FAAKTLADFGAQVVKIEPPGQGDPLRKWRLLHEGTSVWWEAQSRNKQSVCVDLRQPEGQ FT DLVRQLAAQADVLIENFRPGTMEKWGLSWEALHALNPRLIMLRISGYGQTGPKAQEPGF FT AAIGEAMAGLRYLNGEPGRAPVRAGLSLGDTIAGLHGAMGVLLALYQRDARGGQGQVID FT AALYESIFNLSESLLPEYSVFGAVREPAGAALPGIAPSNAYPCRDGYVLIAGNGDAIFQ FT RLMQRIGRADLGDDPELAHNDGRARRAHELDAAIGAWTAQRDIGSVLEAMRAAGVPAGR FT IYSVADIAQDPHYQARGAIARLRAASGIDVDMPAVFPCLSDNPGAIRERAPLLGEHTDA FT VLEEAGLDDAARAGLRARGVIA" FT misc_feature 541075..541644 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 1.9e-61" FT CDS join(542058..542243,542247..543002) FT /pseudo FT /transl_table=11 FT /locus_tag="BB0513" FT /product="putative hydroxymethylglutaryl-CoA lyase FT (pseudogene)" FT /EC_number="4.1.3.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3695" FT misc_feature join(542100..542243,542253..542927) FT /note="HMMPfam hit to PF00682, DE HMGL-like, score 1.3e-45" FT misc_feature 542469..542501 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 543053..544036 FT /transl_table=11 FT /locus_tag="BB0514" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3696" FT /protein_id="CAE31014.1" FT /translation="MHIAKLRLLRGAALAATLAAGATAAHAGDYPERPISLIVSAAPGG FT TTDIAARLIAQPLGQALGQTVVVDNKPGASGGIAGQMVARAQPDGYTLLLQYSGFQAIT FT PHVSTNLGWDPIKDFAPVANVLSAPQVVVVRPDLPVKTLKDLVDYAKANPGKLNYASSG FT NGSLQQVATELLNQMAGIQITHIPYKGTGPALNDLLGGAVDLTITTPPPLLGHIAAGKL FT RALAVTGDKRLPSLPDVPTAAEAGYPALIVSSWFAMYAPAGTPPAIVEKLSGEIRKIMA FT TDAFRQKAAEQGAEARYMDPKQLGAYTQEELDRWGKVVKAAHISAN" FT misc_feature 543053..543133 FT /note="Signal peptide predicted for BB0514 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 27 and 28" FT misc_feature 543200..544024 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.3e-116" FT tRNA 544134..544207 FT /note="tRNA Gly anticodon CCC, Cove score 77.64" FT CDS complement(544370..544711) FT /transl_table=11 FT /locus_tag="BB0515" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3697" FT /protein_id="CAE31015.1" FT /translation="MKQSTFTQARMAFDTTAPLEEVCRKVGMFEAAFYAWRHEGNRIAV FT RYAYEWRDDAGNWFRSYGNENWEFEVDGLMRRRHACINDMPVQESERKFHWPLGRRPDS FT HPGLSDLGL" FT CDS 544903..545700 FT /transl_table=11 FT /locus_tag="BB0516" FT /product="putative transcriptional regulator" FT /protein_id="CAE31016.1" FT /translation="MSEQNEKEGAVGSLERGLLIIRVLLDAPGPMSLAELAQELALGPS FT TVHRLLGTLTKLGQVVREPRGKRYLAAPQVLASLSFQHPITLVRLACRSAIEELRERTG FT ETSAFVLFIGYERLVQDFVIGQRLLSPNYQTWLRSPMHGSASGKLLLSTVPENNWVDLI FT GHEPYQAHTPSTITTYEEMVAEIQAIRRQHYCVSKNEGYEGVSAFGYPVVVLGKTVGCI FT TLTVDSASLNESREAFLIQEMLRCVKSIQAVSGSLKLLHDWLF" FT misc_feature 544903..556407 FT /note="Low %GC region" FT misc_feature 544993..545058 FT /note="Predicted helix-turn-helix motif with score FT 1809.000, SD 5.35 at aa 31-52, sequence FT MSLAELAQELALGPSTVHRLLG" FT misc_feature 545143..545661 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 1.3e-07" FT CDS 545741..546922 FT /transl_table=11 FT /locus_tag="BB0517" FT /product="putative dioxygenase subunit" FT /protein_id="CAE31017.1" FT /translation="MSRSSQQWLARPDLPDDHYVDVDIYTSQQIFDDELKNIFAKTWKF FT ACHESEIPNLGDYRALNHAGIPVFVIRGEDGSVRAFVNACPHRGSKLVTDVRGNAKNLT FT CFFHLWTFDDKGRCIEITREDGYAQSGVCKGKQGLRRIRCHNKFGMLFINLDDDADDFD FT QHIGNVMDCLEEVMTTKPLEVFHHHQVRMNANWKQWHETNMELYHEWGHIVNRSTAIAA FT DGYHNRTWRIHENGHGTLDPMEVSYDNYKGWETRSGHLLPGLGPGELRMVDLFPNTTIL FT VRATAIRIDTSTPIAPGITLLEQRGLGILGEPEQDRKVRVKHHNEIWGPLGRNLAEDVI FT FVETVSETHRREASKWGLFARHEGLKAQDDEIMRAYYRVWGRMMGKSASNPLG" FT misc_feature 545864..546187 FT /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain, FT score 3.5e-23" FT misc_feature 545993..546064 FT /note="PS00570 Bacterial ring hydroxylating dioxygenases FT alpha-subunit signature." FT CDS 546980..547438 FT /transl_table=11 FT /locus_tag="BB0518" FT /product="putative hydroxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0070" FT /protein_id="CAE31018.1" FT /translation="MSDYREEIGDFLYLLSEKLDEELYEDFLSLCDADFHYQVSAFSPE FT LGKEMVWLDHDYKEIRNLMLLIHQHVRMKGNFTRNISMVRIRTAEENCYEVRSQIMVMH FT TDQYGTTKLFAIGNYTDKVTRKQDQLRLLERKVYLNTRDLGSGIHVPI" FT misc_feature 547034..547420 FT /note="HMMPfam hit to PF00866, DE Ring hydroxylating beta FT subunit, score 8.7e-05" FT CDS 547459..548640 FT /transl_table=11 FT /locus_tag="BB0519" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0069" FT /protein_id="CAE31019.1" FT /translation="MTHSNHNSMRRSTLRKLTGLGMGTILTAGAGAAAVIAPFNSFAKS FT ESKAAYRFRFGTIYTPAAAEYTAPGIYDFVERVQRKSDGEIAIQLIDKAQACSEDQCAQ FT RVMNGILHMGSSTFQNTGATMPYSVALDWPFLWKSRVAYHNFLLSKESNRLYRDVLRNK FT YGVVPLYASGGMRNIMMGKKYSEAADITSPDALNGAKIRITNSEMISNFAKSMGMAPIP FT LAWGELLEGLKSGLVDATETYPSAAAGFGMYSVLSQDIDVQFCPGYSMIFMAAKTFDKL FT PERLQELIYESAYESMVEAYQTAIIAESTLVGIGPNPSPDSAYQRGKIRQIKLSPEQHA FT AFKERGSVENNLQLYANLRKQLDDIARIDVYGALNEYAKNTSSTELMAEKWWT" FT misc_feature 547459..547587 FT /note="Signal peptide predicted for BB0519 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.800 between residues 43 and 44" FT misc_feature 547507..547575 FT /note="1 probable transmembrane helix predicted for BB0519 FT by TMHMM2.0 at aa 17-39" FT misc_feature 547621..548544 FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 3e-12" FT CDS 548701..549237 FT /transl_table=11 FT /locus_tag="BB0520" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0068" FT /protein_id="CAE31020.1" FT /translation="MTLKKICTNANLDRVLLKIENSVMIVTYLILICLVGGETIRRAIF FT QEQATWGPEIAMYSFIWLSWFAMARHCRYGTNLGFTKIRNSLPAPVRRVLEVIDAILWL FT AIGSVVFWSTAELISSNFVTEQMVMGTPIPAWIINLGVPLGWAFSMLRIVQRLWLVLFQ FT WDFLENERTNNYLSA" FT misc_feature join(548761..548820,548848..548907,548968..549036, FT 549079..549147) FT /note="4 probable transmembrane helices predicted for FT BB0520 by TMHMM2.0 at aa 21-40, 50-69, 90-112 and 127-149" FT CDS 549268..550539 FT /transl_table=11 FT /locus_tag="BB0521" FT /product="integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0067" FT /protein_id="CAE31021.1" FT /translation="MLLLISFLCIALFILGTPMVLLLAVWVAATSYWVIDYPLMSIGLT FT SIDALKNYTFLAVPLFIATGDLLTAGGVSQQLIKFSRAVIRAVPGRTAATSVLASGMFC FT AISGSSAAAAATMGKLMAPEFKRADIPMRRGGATVAAGGILGGLIPPSTIIIIYSLTVN FT VSPVELNLAAILPGILVLLFIFFVSIMRTRQYEPASKSTDGYFKEVGTSVLGATPAFIA FT IALLFVGLYSGLFSPTEAAGVVTIYCAVIGLYWSRQFGIRDIPKILMESASVTGIIGPI FT VVFSIQFQQVLSVMEIPDLILIQLVELSSAYGATVTLAVMMGIVLLFGTFMEVIAVILI FT LAPIFAPIATEIGLNGVHWGMIFIIGASIGFISPPHGLNLFITSMTMKIDYGELMAEIV FT RMIVPILIAWIIVAAFPYISLVFV" FT misc_feature 549268..549348 FT /note="Signal peptide predicted for BB0521 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.431 between residues 27 and 28" FT misc_feature join(549277..549372,549433..549501,549544..549612, FT 549670..549738,549766..549834,549892..549960, FT 549973..550032,550069..550137,550165..550233, FT 550237..550305,550348..550416,550453..550521) FT /note="12 probable transmembrane helices predicted for FT BB0521 by TMHMM2.0 at aa 4-35, 56-78, 93-115, 135-157, FT 167-189, 209-231, 236-255, 268-290, 300-322, 324-346, FT 361-383 and 396-418" FT CDS 550574..551632 FT /transl_table=11 FT /locus_tag="BB0522" FT /product="oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0066" FT /protein_id="CAE31022.1" FT /translation="MQQEQRILFKNDTGDYAAVAAGEESVLQAGLRQSVPLNYHCASGS FT CGSCKARLIQGALKVHTGTDFIQVSHTADQVCEYPEVHLCQSHAVSDCVFEALYDKNVP FT PDLVTPKHYAASLSDVRPLGSGLYRLLVDFDDSIRFLPGQYVMLATEAGGRARAYSVAN FT FAQDSRQLEFILSCNPNGAMSPQLCDINNIGMQLQGYGPLGKAYIRPSKDKEIVMLVGG FT SGVSVALSTLEWAISSHYIDDRHLTIFWGVRDTSPIDLIGVLNRYAAVHSNLRVAVCSD FT ISPSVQDRVRFPHIEFFTGYPADHIVNDASISWEGKEVYISGPPPMVDHTVRQLMINTE FT IDALDIKCDSFV" FT misc_feature 550595..550846 FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 0.14" FT misc_feature 550694..550720 FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature 550913..551194 FT /note="HMMPfam hit to PF00970, DE Oxidoreductase FT FAD-binding domain, score 7.9e-05" FT misc_feature 551210..551575 FT /note="HMMPfam hit to PF00175, DE Oxidoreductase FT NAD-binding domain, score 0.00066" FT CDS 551733..552050 FT /transl_table=11 FT /locus_tag="BB0523" FT /product="putative ferredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0065" FT /protein_id="CAE31023.1" FT /translation="MTSANLVKACEENEISEGDIVEIKINGLDIILMRNGEQFFAAQAI FT CPHMDEKLCNGLFKKTKLICTKHLWQWDLETGKPLGAAEKPIQIYKTTVKEGVVYVSVD FT N" FT misc_feature 551745..552023 FT /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain, FT score 2.7e-13" FT CDS 552063..552644 FT /transl_table=11 FT /locus_tag="BB0524" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0064" FT /protein_id="CAE31024.1" FT /translation="MAKKLLMLVGDYVEDYEAMVPFQAFQALGYQVDAVCPDKAAGDYV FT MTAVHDFEGAQTYSEKPGHRFTLNASFDQIEMEKYDGLVVPGGRAPEYLRLNSKLLALV FT RYFFEAKKPVACICHGIQILSTAGVLEGYKCACYNTCAPEVAAAGGTYVDIPMDEAITD FT RNLVTAFAWPSHPAWIAQFATLLGTKITHN" FT misc_feature 552069..552623 FT /note="HMMPfam hit to PF01965, DE DJ-1/PfpI family, score FT 2.7e-49" FT CDS 552701..553675 FT /transl_table=11 FT /locus_tag="BB0525" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0063" FT /protein_id="CAE31025.1" FT /translation="MNWIAKTVVGAALGILGALGGVNAAAYPDKPITLVVPFPPGGGTD FT IMGRALAEQLGRELKQPVIVVNRSGAAGNIGAASVARANNDGYTLLMTSAPFAIAPAIF FT PDLSFHPIKDFTAITQISMVPLLVVTRANSPLNSISDLVAAAKQNKESISFATFGVASP FT PHLTGQKIQELAGIKMLHIPYKGGSEAITELLSGQVSIGILDVISMMPMVKDGQLKALA FT ITGPVRAQALPDVPTLVEAGISYDDVGWFGLFAPAGLSPAITQILNVAVNKILARPEMQ FT KLIVASGTVPITPSTSPGDWQTLFNENVRAWGASATEALKEDE" FT misc_feature 552701..552772 FT /note="Signal peptide predicted for BB0525 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.597 between residues 24 and 25" FT misc_feature 552719..552787 FT /note="1 probable transmembrane helix predicted for BB0525 FT by TMHMM2.0 at aa 7-29" FT misc_feature 552839..553663 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.9e-78" FT CDS complement(553982..554443) FT /transl_table=11 FT /locus_tag="BB0526" FT /product="putative phage-related protein" FT /note="no significant database matches" FT /protein_id="CAE31026.1" FT /translation="MKPRAALQSKDEQRSSRTLYAWDLLIGVQDLTRQGVLRLRRPGTE FT AFLGDEKMAAPPVTTLRELEAVAYQFSNRRIDDLDALRKWLAVPVAPGPSLGGARPKAN FT FTDTDGSLWIGKFPARDDDRDVGAWEYAVHQLAQAAGVADGLHYRGGQP" FT CDS complement(554544..555839) FT /transl_table=11 FT /locus_tag="BB0527" FT /product="conserved hypothetical protein" FT /protein_id="CAE31027.1" FT /translation="MMATGTPTRQHVQVCLGKAGLPLGSLVYVQQGRRQNCAFAYDETW FT LASPERFNVSADLQLMPGHQPHKAASPHDSVFHGAIADTSPDAWGRRVIARDHAKRRRT FT DPQLRPLTELDYLLAVDDFSRVGALRLRDSNGPWHRTVPEGRRATPPLIELERIYRASR FT AVERGQETAEDLRYLQGKGTSLGGMRPKCTIVDEDGRLAIGKFPSVNDTRSVTRGEVLA FT LKLAQLAGIDAAPARIVSLADVPVAVIRRFDRDDNDGRIPYQSAASLLQASREEERSYT FT EIADAIRSYGHSPTRDLHQLWRRLVFNLLITNVDDHLQNHGFLHVEHGLWRLAPAFDIN FT PFPDKERESKTWLSEEDGPITDVHMLLARAPYFLLNHAQARSILADVHAAVANWKKIAL FT GVEVGLRAYELDDFAAAFEHEQMDATAALLEG" FT CDS complement(555836..556165) FT /transl_table=11 FT /locus_tag="BB0528" FT /product="putative DNA-binding protein" FT /note="Similar to Rhizobium etli hypothetical protein Yh035 FT SWALL:AAM54968 (EMBL:U80928) (101 aa) fasta scores: E(): FT 9.2e-09, 40.81% id in 98 aa, and to Caulobacter crescentus FT transcriptional regulator, cro/ci family Cc2771 FT SWALL:Q9A4Q9 (EMBL:AE005942) (119 aa) fasta scores: E(): FT 0.043, 30.61% id in 98 aa" FT /protein_id="CAE31028.1" FT /translation="MMAPPVPLPVERAIRKLGNDISLARRRRHISQASLAERMGASLST FT VRRMEKGDIKVPIHFFARALHVFGEIRALEHLLDTPNDEIGLTLMDEHLPKRIRSKSGG FT PSGAL" FT misc_feature complement(555938..556105) FT /note="HMMPfam hit to PF01381, DE Helix-turn-helix, score FT 0.00017" FT misc_feature complement(556013..556078) FT /note="Predicted helix-turn-helix motif with score FT 1980.000, SD 5.93 at aa 30-51, sequence FT ISQASLAERMGASLSTVRRMEK" FT CDS 556234..556410 FT /transl_table=11 FT /locus_tag="BB0529" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE31029.1" FT /translation="MQFNDMADRRIQYARILWGFEPAAGVVLFPEEIPESGLYLEGARK FT TITVNAYERDTAV" FT CDS complement(556568..557497) FT /transl_table=11 FT /locus_tag="BB0530" FT /product="regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0059" FT /protein_id="CAE31030.1" FT /translation="MDLLDPDLNRLASRLRFRHFQLLLTLAREGSLRAAAQEMHVTQPA FT LSRMLEEIEGVLGVQLFVRTSRGLSPTGHGIAATRSARQILEELGRVPQEINLGPQVAA FT LIRVGAPHFVAHSVMPRVISRLAALRPRVHVQLIERPVPELFAALQEGDADALVTTYAP FT QHIEAVKMPLHQEKLYESNYQLVAPPDHRFAKSRRPVPLAKLVNEDWILPAQDSMLRKE FT IDWVFRRAGLLPPVPVVEANNPTTSIQLVVAGIGLGFAHGETLQNVPPGTVAPIRISPS FT PASAQVALVYRAKRMNEKIQALRAALGL" FT misc_feature complement(556574..557203) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.1e-32" FT misc_feature complement(557270..557449) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 7e-22" FT misc_feature complement(557315..557407) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(557345..557410) FT /note="Predicted helix-turn-helix motif with score FT 1861.000, SD 5.53 at aa 30-51, sequence FT GSLRAAAQEMHVTQPALSRMLE" FT CDS 557617..558600 FT /transl_table=11 FT /locus_tag="BB0531" FT /product="putative exported protein" FT /protein_id="CAE31031.1" FT /translation="MFPARRAFVVGMAALMLCAGAGADAREDWPARPIRVVTPFPAGGI FT NDTVIRIVCEKVAAALGQPIIVEVKAGAAGAIGTDFVAKSAPDGYTWLASSGPVFTAAP FT ALFQALPFDPLKDFRAAAMLATAPNILVVPPQLPVSNLRELVAYARQAPGGISYATPGA FT GSSAHLGTEAFMRDAGFSATQVAYRGAPPALLDLIGGRVQFMMVSASLAAAQIGAGKLK FT GLAVMDTRRFPGAADIPTVAEAGFNVEPVVPWFAIHVPARTSDAIVARINREVVAALAD FT PQVRASLGKAGAAAAEPAAPRQIDAAMQAEAARFQALAREQNLAKQ" FT misc_feature 557617..557685 FT /note="Signal peptide predicted for BB0531 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.447 between residues 23 and 24" FT misc_feature 557761..558588 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.5e-81" FT CDS 558597..560729 FT /transl_table=11 FT /locus_tag="BB0532" FT /product="putative acyl-CoA synthetase" FT /protein_id="CAE31032.1" FT /translation="MMGGSAVMTLIEEQAGRSASVVELMNPACVAVVGASEDRRKFGGR FT ILHLLNNQGFRGRILPVNPVRAEILGHQAYRCIMDLPQAPDLVILAIPRDLVVQAVSDC FT GDIGAKGVIVVASGFSESGDEGARLEQQLLAVAREKAVRIIGPNCVGVVSPAHGFSLAT FT TVSLVDRAPLPGHIGLISQSGAVMGTMIDRGISQNVGFSHCISVGNQADVDFCDFVDFM FT IDDPGTHVICTYVEGIKRPDLFLRAAGRAQAASKPWLLMKSGRTEAGAASAFSHTASLA FT SNQAILDGVCRQFGILQVDDVEGMLVAASGWNKYRDMRVRSVAVLSPSGGGCTIAADRL FT SDIGVPLARFSDRATAALAPLFDGPVRNPVDIGAANDGAAMGYVETIHRAALQDEQADL FT VLSVVTNAPVLTEVGKMIGDAARAVDQPLLAVAMPGGYAEGAREQLAAAGVLCTDSLDA FT AMRAIGAWHAWARRPAASSAVRPQGLPVPEPVGAGRLDEAGVKRLLGRYGIRVNEGRVA FT ATPDEAAAAAQALRAPYVVKVISEDISHKTEVGGVRLGLADGPAVRAAAVEMAAQVRQK FT RPDARVDGFLVQEFVRGELELLLGLKQDAQFGVTLAVGAGGTLAEILRDVLFAPCPVSR FT ESAGRLLERLKLAPLFGGVRGGPPLDVAAVVDTMVRLSWLGHDLRDSLQELDINPVLVL FT ADGAGCVAVDGRALSG" FT misc_feature 558666..558995 FT /note="HMMPfam hit to PF02629, DE CoA binding domain, score FT 5.9e-07" FT CDS 560777..561511 FT /transl_table=11 FT /locus_tag="BB0533" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /protein_id="CAE31033.1" FT /translation="MEVTYQSLDRVALVTINRPQRGNSMNPAVVRELAQAWERFSGGDD FT LVAVITGAGNDAFCTGADLKELPGEVWRALPNFAVPTDKPVIAAVSGRAVGGGCTLALY FT ADMIVASESAQFIYPEAKIGIFQGIMGGFPRKLPYAAGLEWITTGDPMSAQRAYELGFV FT NKVCKTGEQVEAALEMARKIAASAPLVVQAMKHLALKTLPANPMETFYPQKGMLEAIAR FT SQDAEEGLQALRDKRDPVFKGC" FT misc_feature 560810..561280 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 3.4e-35" FT misc_feature 561035..561097 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 561590..562567 FT /transl_table=11 FT /locus_tag="BB0534" FT /product="putative exported protein" FT /protein_id="CAE31034.1" FT /translation="MRSSLGRLSACLVMLGCLMGFSAAGAAAGFPAQPITLVVPYPPGG FT TADSLARVLAKSMGARLGVNMIVLNKGGAGTVVGTQFVANSAADGYTLLFTATPFAINP FT SLFEKLPYDTLKDFTVVSDIAETPLVVAAGSGTSINTLGELVDRLKTGKDNSYGSAGPG FT SSPHLVSELLLHEVNGEATHIPYQGSMPAVMDLVANRTTFMFDTPLLMLPLAKEGRLKL FT LAQTSTQRSPLLPTVPTLQESGYPNLSVTSWFVVAARSGAPRDVLEKLNSAINAALADP FT VVAGAYEAQGMIKTGGTLDKAQAKLQQEVKNWALAVQVSGAKVR" FT misc_feature 561590..561670 FT /note="Signal peptide predicted for BB0534 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.453 between residues 27 and 28" FT misc_feature 561737..562555 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.4e-80" FT CDS 563028..563627 FT /transl_table=11 FT /locus_tag="BB0535" FT /product="hypothetical protein" FT /protein_id="CAE31035.1" FT /translation="MREPTPELVARRRELVEATMTRVRAIEKQHGPTREALEAIKNELL FT ALARERDVFLTTEFKPAKRGTFKDFVAYRLNEEDGTGRAMYLSLALPGKSSPPHNHKNW FT AVLVGLVGAEENRLYEVDESGSFRQRDAIMVGQGVGVALMGDDIHSIHVQGVGDEPVWQ FT LRFYERPLEDQVDREQFDPGTGKREMFPPNPNVKPS" FT CDS 563696..564688 FT /transl_table=11 FT /locus_tag="BB0536" FT /product="conserved hypothetical protein" FT /protein_id="CAE31036.1" FT /translation="MAMKRREMLSLCGKSVIALGCGGLPAILRAQGRFPSKALTYVVAY FT TPGSANDILVRILAPELGTQLGQSIIVDNKPGAGGSIGMAAVAQSKADGYTLGLGSTAT FT MAINRALYKNLPYDPLRDFESVVKFASTANVLVVPAGGPAKTLADLKPRDGKPLMFSSP FT GNGTTQHLAGVLFSSTTKLPTEHVPYRGPAESVMAVASGEVDFSLASLPSALAQIRAGR FT LRVLGCTSLKPPSSLPQAVSLAEQGLPGFERTEVWFGLVVPSGTPDQARLALEQASVQV FT LGKQDVREKLEQAGYQPANPQSEGKFDPFVREQVAFWADLVKQAGASID" FT misc_feature 563855..564676 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.3e-82" FT CDS 564738..566327 FT /transl_table=11 FT /locus_tag="BB0537" FT /product="putative sulfurtransferase" FT /protein_id="CAE31037.1" FT /translation="MSEVVSAQWLRQRLESGAECAVVDPREEGAHSVSPHLFHAVNLPL FT SQLELRVERLFPRRDVPIVVAGAGDALDERARRRLQELGYAGAVRLEGGSPAWAGLGLP FT LFTGFNTASKAFGEYVEHGCATPSISADELREMVASGRPLVIMDSRTPAEHRRATIPGS FT VSAPGAELVLRYAELAPDPHTTLVVNCAGRTRSIIGAQSLINAGVPNPVFALRNGTMGW FT ALAGHKVETQSARQAPEPGAATLALAQQRAAAVRRRFGIGEIGAAELQRLRAGGERTVY FT LFDVRTQQEYERGHVPGAVHAPGGQLVQATDSYVAVRNARIVLYDHHGVRDVMTGSWLR FT QMGHEDVVTLRADAVSAAQLAAGPQAVRVAGLDGARARRLAPAEAAGSLAQYTVVDVGA FT YRDYQAGHLPQAYWVTRARLAEALDGLPADRPLLLVSPDALLAQLACADVAASAARPVY FT VLEGGMARWRAEGRPVEEGDGRPLHEPDDAFVKPFEARDRESSMQAYLDWEVGLLDAVQ FT RHPAIRFDLYKE" FT misc_feature 564753..565040 FT /note="HMMPfam hit to PF00581, DE Rhodanese-like domain, FT score 3.1e-09" FT misc_feature 565125..565412 FT /note="HMMPfam hit to PF00581, DE Rhodanese-like domain, FT score 0.00042" FT CDS 566368..567258 FT /transl_table=11 FT /locus_tag="BB0538" FT /product="LysR family regulatory protein" FT /protein_id="CAE31038.1" FT /translation="MNLRQIEAFLAVVDLGTVTRAAETMYVTQSAVSRLISRLEREVGF FT TLFDRRQGLMAPTAEAKALHAEAMRSYIGLKEIQFAAQRIAQIGSGMLKVCVMSSLQQG FT ALPRLVTEFMRKHPGISVMFDVQRHYDVVYAVSRGSAEIGFATLPVDHPNIESLPIART FT PVVCLLPTGHPLAELEAIRPMDLHGVDFLSVPRMRFNDRITRILEAHGARPRTRIEAGT FT MLAAMALVEAGAGAFVVDAFTLGAVRDAQVVLRPFHPEVIVEVGALYSNSQPLSILASR FT FLEHCRAFQHEMETT" FT misc_feature 566374..566553 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 8.8e-21" FT misc_feature 566413..566478 FT /note="Predicted helix-turn-helix motif with score FT 1633.000, SD 4.75 at aa 16-37, sequence FT GTVTRAAETMYVTQSAVSRLIS" FT misc_feature 566416..566508 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 566623..567240 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 3.8e-35" FT CDS 567255..568961 FT /transl_table=11 FT /locus_tag="BB0539" FT /product="thiamine pyrophosphate enzyme" FT /protein_id="CAE31039.1" FT /translation="MNACLPAEAPLADPDPLDPDRKAVDEVARILKAEHTELLFCFPIN FT SLIDAATAAGIRPVVARTERAVVGMADGYARASLGERVGVCAVQYGPGCENAFGAMAQA FT YSDSSPVLMLPGGVNESRTDVRPNFETAKHYGNITKWVARVNRPDRVGEMMRRAYTGLR FT NGRRGPVALELPMDVMEQPVGRSASRHAPSQAIRTLCDPDTVRAACRLLLAAERPVLHA FT GAGVLQSGATPELVELAELLSIPTMTTLSGKSGFPERHPLALGSGGMAWPATVAHGLRT FT ADLLFGVGASLTKSVFAAPLPAGRRAMQLAVDDSDLNKDYPLDHALLGDARLVLRQMID FT MLKNEFGVQPDPARTARTGGELEAIRQAWLRQWHDKLTSASRPINPYRVVHDLQIAWAD FT RDVIITHDAGSPRDQLSPFYRCRRPGEYLGWGRSTHLGYSLPLALGAKMARPDALVAHL FT LGDAAFGECAMDLETAVRNRIGTVTVLMNNGCMGGYDKHMPLSSTTHRTRFLSGDYEMI FT ARGLGAWTERVEDPARLVEALREAARVADTGRPAVLEIMTAEEKALSQEAP" FT misc_feature 567309..567815 FT /note="HMMPfam hit to PF02776, DE Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 6e-16" FT misc_feature 567855..568292 FT /note="HMMPfam hit to PF00205, DE Thiamine pyrophosphate FT enzyme, central domain, score 3e-20" FT misc_feature 568392..568919 FT /note="HMMPfam hit to PF02775, DE Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 5.2e-18" FT CDS 569066..570307 FT /transl_table=11 FT /locus_tag="BB0540" FT /product="conserved hypothetical protein" FT /protein_id="CAE31040.1" FT /translation="MGALPSIGDRRVTSTIPGSPALDGLVVLDISRVLAGPLAGQILGD FT HGANVIKVESFNGDDTRGYGPPFVGEDAAYFLGLNRNKRSIAVDLSRPQGRDLLLDMVL FT GADVLIENFKRSTWRKWGITDFGQLSARNPRLVHCRISGFGDDGQLGGMPGYDAAVQAL FT TGFMTINGPAEADPTKLGVPIIDVSTGLNAAIAISMALFERSKSGKGQLVEVSLFDTAL FT AILHPHAANVLAGGKAERSGNLHPNIYPYDLFPTRTADIYLAVGNDGQFRYLCKSLGCP FT QLADDGRFSSNRLRVANRAALREILTQRLKDVDGSELFQGLLSNGVPCAPVHSVQEALE FT LEHLRQRDGLVRVGEYQGLRSPIRMQRTPPSVRARPPGIGEHTDELLGELGLPPGQIAR FT LVDEGVVKVSKERA" FT misc_feature 569321..569890 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 5.3e-46" FT CDS 570304..571074 FT /transl_table=11 FT /locus_tag="BB0541" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /protein_id="CAE31041.1" FT /translation="MNHISIRYEDSVAVVTYDRGEKKNAMSMQIIRDLTATAEALKDRH FT DITCVVLGGSRAAFSAGVDLTDPERFDLAGKSLSEQRQILTLGTRMCRAWEELPQITVA FT AIEGMNVGGGVALTLACDWRVMADDAYLFVPEAQIGINLSWNAIPRLVNMVGASMAKQI FT VLLGEKMPSAQARELGLVDWVVPGGSAEARAIELAGRVSQCPAHVVRMSKQSINAHANA FT LNHLGTYMDVDQAMVCGASPEAARARGQFNKARA" FT misc_feature 570340..570861 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 3.3e-29" FT CDS 571123..572109 FT /transl_table=11 FT /locus_tag="BB0542" FT /product="putative exported protein" FT /protein_id="CAE31042.1" FT /translation="MNTNLAKWLGRLVVAGVAFGSGAPAATAADQPSSWPRKSVTIVVP FT FSPGGSTDQIARLFSAKLAEKLGQPFVVVNRPGAGTIVGMQEVVRARPDGYTLLLAVST FT VSTQPALYPNLPYDIKRDLVPVSLLGKIPLLIYTNPAFPAHTLGELVEQARKPGADITY FT ASPGAASTAGLTGELFNEKVKTEIRHIPYNSGSPAMTDVMGGNVDLLWGTAAQGLEQYR FT AKRLNAVAISSERRSPSFPEVPTFREQGVDLVAEEWFGLMAPKGTPPEIVARVSQAASE FT IVKGNSFGDDYNYFEFIGSDPASFGAYMDAQAALWTGLVHRLGLQVK" FT misc_feature 571123..571206 FT /note="Signal peptide predicted for BB0542 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.984 between residues 28 and 29" FT misc_feature 571285..572097 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.1e-75" FT CDS 572106..572918 FT /transl_table=11 FT /locus_tag="BB0543" FT /product="putative transcriptional regulator" FT /protein_id="CAE31043.1" FT /translation="MKALKARDIDTSDEEQGKGPQALRRGLAIVEFLEGAATPAVSVTE FT IAQRTGLQRPTVHRLLDALEQFGWVARRDDGRRFLARERGADASFLDAGLDARAPRSLI FT LQSIPAMRRLAQRFGDTVYLVWRDGGDSVSIHREFGSYPIQVVGSYPGNRYPLGVGSAG FT MAILAAMPAPAAESLVMRNADRIRAFDGLAPEVLLRLRACAVESGYAVMQNYVAKQALG FT VGCAMKRRQGVPVLAMSVSSVAERMSKARQREIATAIDAELALLAQME" FT misc_feature 572226..572291 FT /note="Predicted helix-turn-helix motif with score FT 1496.000, SD 4.28 at aa 41-62, sequence FT VSVTEIAQRTGLQRPTVHRLLD" FT misc_feature 572364..572909 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 7.2e-05" FT CDS complement(572943..573905) FT /transl_table=11 FT /locus_tag="BB0544" FT /product="putative exported protein" FT /protein_id="CAE31044.1" FT /translation="MHRRSFLTATLLSLLATRAWAQKTAYPGQRPVRLVVPAAAGGATD FT LVARLIAQHLSPSWPEPMVVENRPGGGGVIGTQAVARAPADGYTLLMGAINHTINASLV FT KNLPYDTLGDFTFIAGVVSIPNVLVVNPKVPVNSVEEFIRYSQTHDLTFASSGNGTSQH FT LSAEKFRMDTGAKYQHVPYKGSAPAVTDLLGGHVDLMFDNLPSAAPNIRTGRLRALGVT FT SAQRNPAFPDIPAIAETVPGFDVRSWFGLMGPAGLPRDVVERLHAEMAHVFAQKDVLQW FT LDKMGAQAEVTDPAAFDAYVRQEIKRWAEVVQASGATVQ" FT misc_feature complement(572955..573767) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.1e-109" FT misc_feature complement(573843..573905) FT /note="Signal peptide predicted for BB0544 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 21 and 22" FT CDS complement(573987..574385) FT /transl_table=11 FT /locus_tag="BB0545" FT /product="conserved hypothetical protein" FT /protein_id="CAE31045.1" FT /translation="MTSTELSHDPYVAAFPELAPFWQAAAGGALLLPYCQDCGQTHWHP FT RAFCPECGSERLRWQPATGAATLHTFSVIHRGQAPAYVLAYAQLDEGPLVMTNIVGAEA FT AALCIGMRLRVAFRQTPEGRHAPVFEPA" FT misc_feature complement(573996..574340) FT /note="HMMPfam hit to PF01796, DE Domain of unknown FT function DUF35, score 2.1e-09" FT CDS complement(574382..575554) FT /transl_table=11 FT /locus_tag="BB0546" FT /product="conserved hypothetical protein" FT /protein_id="CAE31046.1" FT /translation="MAFQHPAFVAGAFEHPTRHAPDKSTAQLHAECARGALADAGLSLE FT DVDGYFCAADAPGGIPALMADYLNLRKLRHVDGTESGGCSYIAHVGHAADAIARGKCSV FT ALITLAGKPRSSGQATGTEIRQIPPERPAAAFEQPYAWTVAGMYGLLARRHMHEYGTTM FT EQLAWVKVAASHHAQHNPHALLRKRYTTEDVLGSPLVADPLRRMDCCVITDGGGALVLV FT APHIAASLARPRVGVRGYAETIRTNEAGRLDLLQTGAAVTGPRAFEMAGLAPADVKYAS FT VYDNFTIMVALQLEDLGFCAKGEGGRFVADGNLISGVGRLPWNTDGGGMCNNHPQNRGG FT ITKVIEAVRQLRGEAHPAVQVPSCDIALATGPGLVMGAGHAHATVLLERV" FT CDS complement(575598..577154) FT /transl_table=11 FT /locus_tag="BB0547" FT /product="putative ligase" FT /protein_id="CAE31047.1" FT /translation="MQLIDTFDRGAGYGLAEPCFIEPGGRTLSYGQVQDMSHRIANGLR FT AAGLDRDSKVGTLSANHLLTFPATLGIVRSGYMWLPVNARNAAEENANILARGGCEFLF FT IHSQFAAQLPGLLQALPGLKGVVCIDGALPQAPSLQDWMARQSAAPARSDARIDDVVAI FT RGTGGTTGLPKGVLVTHRNYLALLANWYAAMPVLERPVHLVVAPLSHAAGSATFAACAY FT GGCNVILPTADPAAIIDAIGRYKVTQLFLPPTAIYKLLAHPEIRRGDYASLRYFLYSAA FT PMSVDKLREALDIFGPVMVQAYGQAEAPFMCTVLSAGEHAGILRDPALRHRLASCGRAS FT PFVRLGIMDPHGNLLPAGERGEIVVQGDLVAQGYYQDPAKTAETFKQGWLHTGDVGYQD FT GDGYLYIVDRMKDLIVSGGFNISPSEVEQVLWAHPAVGDCAVVGVPDDHWGEAIKAVVE FT LKAGAQWDAEQVLAYCRERLGSMKTPKTIEVWEQLPRSSVGKVLKRDIRERYWSGQARR FT V" FT misc_feature complement(575832..577070) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 3.8e-110" FT misc_feature complement(576633..576668) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 577323..578339 FT /transl_table=11 FT /locus_tag="BB0548" FT /product="LacI family regulatory protein" FT /protein_id="CAE31048.1" FT /translation="MTKRVSVREVAHAAGVAISTVSRVLNGSGYASPDVRLRVQQAVAR FT LGYEPDYTARHLRTGHSRTIGCLLPSIANPFVAQLLSEVERLAQAAGYSLLVGSSEQRS FT RDKELVAFFENRRLEGIIALPAHEYDPIAASPFAATKLPTVIMDRDMGPGFDAVLIDHE FT PGMRQVMDYLLSLGHQRIALFAIGSQVRPGRLKLRSYRAALEAAGLPFDDRLVYLTDSS FT LESARQPMQRMLGLDAPPTAIVAVGTQLLSGAVHVVREAGMDIPRDMSVVAIGTMQTLE FT LMYPPVTALRYNFQDSARAVVQLILERIERTAPPQARTVVIPSDLILGSSCGPAPAR" FT misc_feature 577329..577412 FT /note="HMMPfam hit to PF00356, DE Bacterial regulatory FT proteins, lacI family, score 1.2e-07" FT misc_feature 577335..577400 FT /note="Predicted helix-turn-helix motif with score FT 1768.000, SD 5.21 at aa 5-26, sequence FT VSVREVAHAAGVAISTVSRVLN" FT misc_feature 577506..578312 FT /note="HMMPfam hit to PF00532, DE Periplasmic binding FT proteins and sugar binding domain of the LacI family, score FT 2e-07" FT CDS 578507..578845 FT /transl_table=11 FT /locus_tag="BB0549" FT /product="putative membrane protein" FT /protein_id="CAE31049.1" FT /translation="MTINKRLIQAILAGALALGLSTAALADKQGRNTVIGAGLGGVAGA FT LLSDGDPWVTLGGAAAGGVLGHVITDDDRRGRRHHWDRDRGRDYKRASYRGHDKYRGNK FT HRYKHRRH" FT misc_feature 578507..578584 FT /note="Signal peptide predicted for BB0549 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 26 and 27" FT misc_feature join(578525..578584,578660..578713) FT /note="2 probable transmembrane helices predicted for FT BB0549 by TMHMM2.0 at aa 7-26 and 52-69" FT CDS complement(578888..579097) FT /transl_table=11 FT /locus_tag="BB0550" FT /product="hypothetical protein" FT /protein_id="CAE31050.1" FT /translation="MCVNCVAGLFTLHEPSSPQAGFETFKRLKARRPEVMGARPSSEAA FT NEKPRAPRNPFYGSRNRRALADPD" FT CDS complement(579104..580525) FT /transl_table=11 FT /locus_tag="BB0551" FT /product="conserved hypothetical protein" FT /protein_id="CAE31051.1" FT /translation="MAAVACDTLIGRLADFAAAVRYDALPAQVVAECKRILLDSLGCAY FT AALGADKGRLAMQAGRDMGGPAEASVFGGQERLSAASAAFVNGELINALDFDACTIPPG FT HVAPYALPPLLAAGEAARAGGKRIIEAIAVAHEVCARVGSAMSHYRDLTPGQRLGFPPV FT TGYSSTIIGSTLACALARGMPRDLTAHAVGLAARMAPAQSMTKWIQTLPATDDKYLMAG FT WMAQAALQAVLLASNGYRGDVAALEGEYGFWRYMGVRKWNPRALTDGLGTDWRFPDLTI FT YKPYPTCRISHTVLDCLGAILADHALKPHEIENVAAYCDPHAATLPMFANTFIASAGDA FT AMNVAYAVSMIVHGVRSGPAWHDDATLNNDRLLAFMRKVTVLPHPRFEEMLAAEPQSRI FT GRVEIRARGRTFESELHYRKGSPATPRTRMADTELLEKFTHCASRAKAGSAERIAAMIF FT RLEQLDDIGELARIW" FT misc_feature complement(579119..580507) FT /note="HMMPfam hit to PF03972, DE MmgE/PrpD family, score FT 5.5e-20" FT CDS complement(580525..581607) FT /transl_table=11 FT /locus_tag="BB0552" FT /product="putative Zinc-binding dehydrogenase" FT /protein_id="CAE31052.1" FT /translation="MKTHAIVQRGPRRLEYVQLPLPEVLAPDEALVRVEGCGICGTDYE FT RYEGSLGHVPELIPGHEPVGRIERIGDSAAQRMQLKEGDRVAVQPHYGCGVCSYCVEGM FT FQLCARKINLGLSPLSEGCGLWGGFAEHMMLKGNAIVHKMPDSLPIEDAVMFNPLGAGF FT EWAITSAGTRVGDDVLIFGPGQRGLACVIAAVIAGANRIVVTGLQKDAYKLELARSLGA FT TEVVAIDPADPASLARALEGQKFDRVIDVTPVATQPILDAIALVRPGGTIVLAGLKGNT FT RTVALRPDDLVMDGIEIKGVRGISTRSYGLAVRAICSGAYDFSAWHTHTMALKDAELAI FT RILAGEVRQGPEPLHITIVP" FT misc_feature complement(580531..581586) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00107, DE Zinc-binding FT dehydrogenase, score 4.3e-49" FT misc_feature complement(581386..581430) FT /note="PS00059 Zinc-containing alcohol dehydrogenases FT signature." FT CDS 581839..582741 FT /transl_table=11 FT /locus_tag="BB0553" FT /product="conserved hypothetical protein" FT /protein_id="CAE31053.1" FT /translation="MTKTRHAFRRQLEAGSGSILAAGVGDAGQARLVERVGYPAVYISG FT SYVNHTRGYPDGTLTLSEIAQRISEVADRVNIPVIADADEGFGSVLKIARTVHEFERAG FT AAALHLEDFAIKKHGLPLPVQDMVTHLKVALDTRTDPDMLIIARTDAMSPWRDGIHARR FT AACEEEAFERALRYCDAGADAIMPLFATNSWLERYGPRIPKPLVVLGGAPKNWGAEAAG FT VAEPEKAASELLAWNVRMVIYATNMLSRAHRFMTQEYGRWLQDGKFDVRPEDEADRADA FT NVLVGLPEKERILQKYPVG" FT CDS 582766..583131 FT /transl_table=11 FT /locus_tag="BB0554" FT /product="putative carboxymuconolactone decarboxylase" FT /protein_id="CAE31054.1" FT /translation="MTDTRNSDPGRDARGLEAARQLYRQRLDEIAPALAQMTDDVLFGG FT LWERPQLSKRDRSLITCTALVALGATEQMATHFPRALENGVTREELVEMITHMAYYSGW FT PSAVSAAMRAWEILARE" FT misc_feature 582823..583125 FT /note="HMMPfam hit to PF02627, DE Carboxymuconolactone FT decarboxylase, score 8.2e-12" FT CDS complement(583179..583949) FT /transl_table=11 FT /locus_tag="BB0555" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /protein_id="CAE31055.1" FT /translation="MDDTLLIDDPAPGVRVITLNRPQRLNALDGPTLARLNAAVRDSTA FT PERSLRVLVIRGAGRAFCSGVDLKWAASGVLDDRAAHQRNQDLMQETYEAFEAAPQIVI FT ASVNGFAVAGGLELALACDIIVASDEAQLGDEHIRRNLFPSGGSTQRLPRKIGLARAMY FT YLVTGRRMSGREAERIGLASLAVPPLELDAVSLGLAEEIARADALALASMKLMARRSLE FT LPLKDGLAMERWMQFRYRTASPSLDAGVRKFAEG" FT misc_feature complement(583389..583907) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 3.5e-39" FT misc_feature complement(583578..583640) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(583996..585183) FT /transl_table=11 FT /locus_tag="BB0556" FT /product="iron-containing alcohol dehydrogenase" FT /protein_id="CAE31056.1" FT /translation="MIHTGKIDSPRIGSVLFGPGALQRLGQCVPQLHARRVLLVTTTSL FT ARQPDVLDEVRGALGGASVAIYGGARQHVPWEQVVEGARAARQHEADLLVSLGGSSATD FT VTKGINLALAEAGAEGCAAFLARHAALGADAAKRRFSRPKLMHVAIPTTLSGAEFSSSV FT GMTDARTRRKFAMVDAALTPGLIVLDPAVTRQTSAALWTSTALKVLADCFEEICSPRHV FT PMVDALALQSVRIIDRYLLASAAAPMDQQARAMLQHATWMCESVKACTGLGIVTALRHQ FT IGGMFDVPHGMASSVVFPAGVRFNRPGVDERLALIADAMGLQARDTAAAAGAALQRAQE FT LIAAASLPTRLRDVGVPRDGLDRLAEAVMLDRQTLNNPRPVESVAQVRELLGQIW" FT misc_feature complement(584023..585144) FT /note="HMMPfam hit to PF00465, DE Iron-containing alcohol FT dehydrogenase, score 5.4e-25" FT CDS complement(585233..586474) FT /transl_table=11 FT /locus_tag="BB0557" FT /product="CaiB/BaiF family protein" FT /protein_id="CAE31057.1" FT /translation="MPHTPFPCHTRADDMTSPSTPQRPRFPLRELDGRQPAILDGIKVL FT DLTRLLAGPVATQMLGDLGAEVVKVEHPKDGDDTRVWSPKLEGHSGTFLSANRNKASIT FT LDLKSADDLETMKTLIRRADVLVENFSAGVMARLGLAYDACVELNPALIYCSISGYGQA FT GIFRGRGGYDAVFQAESGHMSVTGSPEGEPMRMGAPVTDFTSGVVASNAILAALFHRQR FT TGEGQFIEIAMQDVAFNMLINFGMNYLASGIVPHREGNSSPLAAPTGVFQAGDGDLLLS FT CANDRLWQKFALLVEREDLLADERFQDNGARVRHRAALAQALAPVMAGRTVDQWLALLI FT PAGIPAAAVRNLDGAYAQPYVQERQLVTEILDSKGRSVPTVANPIRFAKTPVVIRRAPP FT ELGEDNAAIGRLFT" FT misc_feature complement(585602..586168) FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 6.8e-74" FT CDS 586713..587924 FT /transl_table=11 FT /locus_tag="BB0558" FT /product="putative racemase" FT /protein_id="CAE31058.1" FT /translation="MGVPEMNTDATRPGSPAEPAVGPLHGLRVIEVAAMGPVPFCGMLL FT ADLGAEVLRVDRTADAGLGIALDPRFELRGRGKQSVAMDLKHPDGLAAFLRLVARADVL FT LEGFRPGVAERLGIGPRACLSLRPSLVYGRATGWGQSGPMSQAAGHDINYLALTGALDM FT IGPAGGAPVPPLNLVGDYAGGALYLALGVVSAGLEAARSGVGQVVDAAMIDGVSSLLTV FT FHGFRQAGMLNPERGANVLDGGAPYYTTYATLDGRHMAVGAIEPKFFAVLLSELGLDQR FT ELPAQQDRARWPQLRQAIAARFAQRTRDDWAAHFQDKDACVSPVLALHEAPQHAHNQAR FT AQMVDVDGIEHPAPAPRFSRTPASIRGNAAAPGAHTVQALESWGFDAAEIERGLSAGFF FT RSDP" FT misc_feature 586953..587528 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 1.6e-73" FT CDS 588130..589095 FT /transl_table=11 FT /locus_tag="BB0559" FT /product="putative exported protein" FT /protein_id="CAE31059.1" FT /translation="MLRFLRYAAVMLALGCHIPAHAQNYPSRPVRFIVPYTTGGTLDLQ FT ARVIAEAIAKIWQVPVVVENKPGANGVIGTAEVARAAPDGYTVGLVSGQHSTLPSLSAH FT LPFAMTDLKAVAILTKVPMALLARPNLPAGNVAELVAYAKANAGNVTAGTAGPATMNNI FT WLKSFEQETGTRFLAVPFRGSGPAHIDIMADRVDVMFDAAGAVLRNIQAGRLKVLAVGG FT TGRSQLLPDVPTLEEQGFPMGKYMFSPSAAVVPAGTPPEVVQKLGQDLLAVLAQPAIRQ FT RLIEAGLEVVGMGPDQADGFIASEIDRLSKIVRANNIVAE" FT misc_feature 588130..588195 FT /note="Signal peptide predicted for BB0559 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT misc_feature 588262..589083 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 7.5e-75" FT CDS complement(589158..590045) FT /transl_table=11 FT /locus_tag="BB0560" FT /product="LysR family regulatory protein" FT /protein_id="CAE31060.1" FT /translation="MAHNIKYRQLKAFKIVAETGSFKVAANRLAITQPSMSIMIKELEE FT DVGVPLINRTTRSTELTDAGRDFYEQVKGSLDQLEKAYAYAKAAGKAEHGRIRIATLPT FT LAGSLLSTVIAEYRKQYPKVAIELVERTYLGFIRALRQQEVDFGIGILRSEEPDFEFTQ FT LCTDRLVVVAPKGHPITQKRIGVKTISQYDIVMISVGPQAEALRQLGLEASAKVLVEQP FT STAIEIVRKGASLTVTSSSALVGIDKRGLASVPVPGALSYRNIGLLVGKDKKLNPAATK FT FIEYVQAHIQAGPP" FT misc_feature complement(589173..589778) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2.4e-38" FT misc_feature complement(589848..590027) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.2e-21" FT misc_feature complement(589893..589985) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(589923..589988) FT /note="Predicted helix-turn-helix motif with score FT 1082.000, SD 2.87 at aa 20-41, sequence FT GSFKVAANRLAITQPSMSIMIK" FT CDS complement(590154..590864) FT /transl_table=11 FT /locus_tag="BB0561" FT /product="conserved hypothetical protein" FT /protein_id="CAE31061.1" FT /translation="MSLHEPNSLPLAPRIPSTAVLAIWNDIDPEIASEYELWYQHDHIR FT DRAGTPGFRSARRYQRVAGAGREYFTFSDLESIEASRSPAYLERLRNPTEWTRRMMPHF FT RRLIRTASHVSIDCGEGTGGIAGTAVFDTVAGDRLAAIRTLIQAEAERAVRQAGVTRLR FT LFEGDAQATGVPNPEAALRPDPPRTAGLALVLEGTSGKAVADQLRNLCAMPLLAALPEV FT MPASIYQLIYSSQS" FT CDS complement(590917..591897) FT /transl_table=11 FT /locus_tag="BB0562" FT /product="putative exported protein" FT /protein_id="CAE31062.1" FT /translation="MNPTRRAMLACAGALAVAGAAPRTWARDAFPSRPMRIIVPVSPGG FT SNDLAARLLAPSLSQALGQPVVVENKAGAGGAIGSTLVARADPDGYTALLYSNSILTLP FT ALMKNPGFQVQRDLIPVSMLVKSGAVLVVGNSVPANTFPELLKYIRENGSAINYGSGGI FT GGSTHLMGEMFNKMAGTNMTHVPFKSAGEYNQAIIANQVQLAFDVLSSAKPLADSGRLK FT ILAVTSKERDPALPQVPTLDEGGLPGYEYLVWQGLFLPAHTPRDIVMKWAAACKQAVDT FT PEVRQKFASSGVETVGSTPEEFARVVQRDAPLLTKLVEAAGIAPQ" FT misc_feature complement(590929..591750) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.6e-91" FT misc_feature complement(591820..591897) FT /note="Signal peptide predicted for BB0562 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.430 between residues 26 and 27" FT CDS 592224..593390 FT /transl_table=11 FT /locus_tag="BB0563" FT /product="acyl-CoA dehydrogenase" FT /EC_number="1.3.99.-" FT /protein_id="CAE31063.1" FT /translation="MDFTYTDEQQAVRDMVRAFARNEIAPIADECDRSESFSYDTWRRL FT AELGVINMNFPQDCGGSEAGMLAMCLAVEEVCYHDSSYGPVFTAQQTCCRHILRYANEP FT QRSQWIEEYVLPISRGVAFGATALTEPNSSSSDAASMSTFARRDGDEWVINGNKMYSTA FT AGLEGAKFVIVWAIVDKQTRKSGLFLVPHGTPGFTVGSKLHKMGMRAADTRELFFTDCR FT IPAAHILNGGAAGQASPFKSDTQYHSKLFLASNAIGLQRYCLDQAIDFAKQRKTWGVPL FT SERQLIQGWIAEMVADIQISTLLRDRAAVLYEAGTLSAADSAILKYVSAENAVKASHYA FT SEIFGGMGYMDGVGVSRRYRDAKGLTIIQGGSTLFKWIIAQETLREAG" FT misc_feature 592236..592571 FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 8.9e-18" FT misc_feature 592602..592910 FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 1.6e-31" FT misc_feature 592914..593375 FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 5.1e-29" FT CDS 593508..594488 FT /transl_table=11 FT /locus_tag="BB0564" FT /product="putative exported protein" FT /protein_id="CAE31064.1" FT /translation="MIDRRTFLSTLAALAASGIARGADGPASGYPDKPVHLIVMNAPGT FT ATDNLARFVASHMARQWGSPVVVENKLGGGGTIGTNYVAKAPADGATVLFTNAAHYIFP FT SLYRNLPYDAAADFTPVAKVGHTPSLLLLPADSPYATVRDVIAAAKAHPGKLSFSSSGT FT GASPHLAGALFNSMAGVDIQHVPYKSAAQAILDVASKQVDMGFNGVTGPLPLIRDGRIR FT ALAVTSPKRSRLLPDVPTIAEAALPGYAIETAVFALVRAGTPEPVVRKLADAMTAAARS FT AEFNELCAANGIDIDIVGPAGMKAAMPGEFAKYQKLVALAGIKAE" FT misc_feature 593508..593573 FT /note="Signal peptide predicted for BB0564 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 22 and 23" FT misc_feature 593655..594476 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.8e-91" FT misc_feature 594381..594422 FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT CDS complement(594583..595119) FT /transl_table=11 FT /locus_tag="BB0565" FT /product="conserved hypothetical protein" FT /protein_id="CAE31065.1" FT /translation="MILSGRVWKFGDQLHSSHFLSGRHDALGRAGKFEQLSRHILEDAN FT PAFVDQVRPGDLLVVGAAFGTGKHLDGLIHAFRTLGIAAILGKGFSAAWERDSINLGLP FT ALVYPELYEHVQTGEELQLDLRGTLARNLTRGTTIAVHATDAGLLALLEAGGIAAYTAR FT RLGIVDRPKAGAHTA" FT CDS complement(595116..596426) FT /transl_table=11 FT /locus_tag="BB0566" FT /product="aconitase family protein" FT /protein_id="CAE31066.1" FT /translation="MAGMGKTMTEKILSAAAGRNVSRGDFGWAKVHVVSMIDALHFCDW FT DFFDRNQVKVWDPSRVVFSFDHLAYPGFGLGVQGLGRIRDWARRHGVPNENIFDIGRNG FT ISHQVPAEHGWVLPGTVYIGADTQAATLGAFNCFAIPALAETPFIMATGDTWFKVPPCV FT RIRLSGRLPKGVLGKDIYLRLLQDLRGKLEGCAIEFDGPGVATMPLDVRMAVANGAPHI FT GATTMIFPSDDILLDYLRPRAREAFAPVAADGDAAYDQAYEYDLASFEPLIAGPDDPGR FT ISPLRAMAATRIHAAYIGSCSSGRLEDLTQAAEVLRGRKISPDVRMVVTPISTEVMLQA FT VEAGLVAAFVEAGATVTAPGCGACFYGNASPLHLEDGENCITGSVENWPGRMGSNKASI FT YLANAAVVAASALAGHIADPDMVRPSNAGAASAREQP" FT misc_feature complement(595185..596408) FT /note="HMMPfam hit to PF00330, DE Aconitase family FT (aconitate hydratase), score 6.7e-15" FT CDS 596595..597488 FT /transl_table=11 FT /locus_tag="BB0567" FT /product="LysR family regulatory protein" FT /protein_id="CAE31067.1" FT /translation="MTGGLTVSHNIKYRQLKAFRILAESGSFKHAADSLAVTQPSMSIM FT IRELESDLGVALIDRATRSAELTDAGRDFYQQIKGSLDQLEKAYSYANAAGKAEHGRVR FT IATLTSLAAEAVTTAIARMHAERPGIQIELMERTYFNFLLALRRREVDLGVGILHEAHA FT DLDFQYLFSDQLVVVTPKGHPLARQRQPLKHLGKYDVVVVSPGPSLEALQELDADCAPP FT VQVEQPSTAITMVRKGLGVTVTSSSATTGLDMRGLAAVPIPGTTRDVGVITLAQARLSP FT VASAFLRCLRHVHPAG" FT misc_feature 596631..596810 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.7e-20" FT misc_feature 596670..596735 FT /note="Predicted helix-turn-helix motif with score FT 1226.000, SD 3.36 at aa 26-47, sequence FT GSFKHAADSLAVTQPSMSIMIR" FT misc_feature 596673..596765 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 596880..597479 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 3e-35" FT CDS complement(597522..598937) FT /transl_table=11 FT /locus_tag="BB0568" FT /product="putative exported protein" FT /protein_id="CAE31068.1" FT /translation="MTRTDAGRREPMRIAVMGGGIAGMVFAARAAELGGKVVVLEQGDD FT ELYRCNTRYTGGAFHLCFHDIDEPAETLATAIKAATADFATDALTEAIAADARHAVRWL FT QGKGIRLMKAGPDAWRQHFLAPPSLMQPGLHWQGRGGDMLLRTLRQRLEVDGGRLLRGA FT RVTRLLMAQGRCAGVEYERHGARHAIEADLVMLADGGFQANMDMLRQYVGPAPEKLKQR FT GAGVSQGDAIRLAQEAGAALVGMENIYGHLLCQDALHDDRLWPYPIMDMLAGAGIVVGQ FT DGRRVMDEGLGGVYMTNALARLPDPQGTILVFDRAIWDGPATEFILPANPYLPLSGGTV FT QSADTLPELAARTGVDADGLSQTVLAYNAALARGATAALAPPRSAGAARPIAHPPYHAV FT RLVPGITFTMGGIAIDGNGQVLQAGGAPVPGLYAAGCCTGGFEGGARSGYVGGLTKSAT FT IGWRAAAHALARS" FT misc_feature complement(598848..598937) FT /note="Signal peptide predicted for BB0568 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.956) with cleavage site FT probability 0.891 between residues 30 and 31" FT CDS complement(598934..599176) FT /transl_table=11 FT /locus_tag="BB0569" FT /product="putative membrane protein" FT /protein_id="CAE31069.1" FT /translation="MQALPLNIPRYPMLRFVARHGRNLVLAIAIVLLAAGVAMLAQMPS FT AIPGAIAIGAAVVVFVVGRALVEMVELITDMLLPK" FT misc_feature complement(join(598976..599044,599057..599116)) FT /note="2 probable transmembrane helices predicted for FT BB0569 by TMHMM2.0 at aa 21-40 and 45-67" FT misc_feature complement(599057..599176) FT /note="Signal peptide predicted for BB0569 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.969) with cleavage site FT probability 0.613 between residues 40 and 41" FT CDS complement(599177..600001) FT /transl_table=11 FT /locus_tag="BB0570" FT /product="putative hydrolase" FT /protein_id="CAE31070.1" FT /translation="MPYVQLDGPGRATPLCLHYRRFPGPAHATPLVLLHELGGTLESWE FT PFAQRLCRRYDVYAFDQRCAGRSEHTGQPFTLWDLARDTIDFVDAMKIEGRFALMGLAM FT GAVTAAHVAARHADRLHGLVLCDGTPAIDRNSSDYLLGRAAKVRTDGMRVVAEPSYRNA FT FKGLLGQAEDDGWDQYLERFICNAPVSYAMHSEALAAFSLDDSDFSRIAAPTLVLTGEH FT DFIWPPATGAALAARISGARFEAVAGAAHFPPLQRPDAVAARVASFLDRDVS" FT misc_feature complement(599195..599839) FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 1.7e-20" FT CDS complement(600004..600738) FT /transl_table=11 FT /locus_tag="BB0571" FT /product="putative branched-chain amino acid transport FT ATP-binding protein" FT /protein_id="CAE31071.1" FT /translation="MPSLLEVSGLRAGYGLFSVLHGLDFHVAEREIVSLVGSNGAGKTT FT TMRAVSGLIAPSGGTIRFDGKDTTGLSPSQMVARGLVCVPEGRQLFPQMTVLDTLLVGV FT STPRARQRRDENLERVYQLFPKLKERRGQLCGTLSGGEQQMVAIGRGLMSAPRMLLLDE FT PSLGLAPTIVKQLFQAIAGIREQGVTVLIVEQNVRSVLSFVDRAYVIENGSVELSGSAA FT ELSNNPNVVNAYFGIGSKESVH" FT misc_feature complement(600100..600651) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 4.2e-49" FT misc_feature complement(600283..600327) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(600607..600630) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(600731..601444) FT /transl_table=11 FT /locus_tag="BB0572" FT /product="ABC transporter ATP-binding protein" FT /protein_id="CAE31072.1" FT /translation="MLNVENVSVRFGGLVAVDSISFDTDTNRILCIIGPNGAGKTTLFS FT VLSGFLRPTLGQVRFNGLDVSSMRPDQVALAGIARTFQIVRPFRDMTVLDNVMVGAYAR FT CSRYEEARERALHIIDEVGLHRKRDFLASYLTLPDLKRLEVAKALATQPSYLLLDEVMA FT GLNLPEQHEVAAMIEKIHQRGVGVLLVEHSLAIVQRLGQHVLCMDSGRKIAEGTARDVI FT QSEAVQVAYMGVSNA" FT misc_feature complement(600815..601366) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 6.3e-33" FT misc_feature complement(601322..601345) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(601446..602483) FT /transl_table=11 FT /locus_tag="BB0573" FT /product="putative branched-chain amino acid transport FT system permease" FT /protein_id="CAE31073.1" FT /translation="MFSKLTDSFRQQGTTLWCIAALVVVAAAVAAPWMNPYYTRVMTMG FT LMCGYLAASWNLIGGYAGQMSLGHALFFAIGSYSVALLARMPDVPLVAAFPLAILVSVG FT LAWIIATICFRYALRGIYFAVGTLLLAEIARILVINSDVLGRSQGLQIPGMQGALNFSF FT GSDLPFFYIFLGISIALALGSLALERCKLGYDLVALREQEEGAQALGVDVAAIKRLAFV FT LSAALTCVGGVIYAGLVRYVEPGYDLSLSITLFMVMGAVLGGRGTALGPFLGGVVMVIV FT QETLITVGSAFGTTSVSALAQMIYGLFFVVILLVFPRGIVGQLLHRRVDRKATRLPASA FT TPEAS" FT misc_feature complement(601509..602384) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 1.4e-10" FT misc_feature complement(join(601509..601577,601605..601673, FT 601692..601751,601761..601829,601923..601982, FT 602067..602126,602145..602213,602226..602285, FT 602304..602372,602382..602447)) FT /note="10 probable transmembrane helices predicted for FT BB0573 by TMHMM2.0 at aa 13-34, 38-60, 67-86, 91-113, FT 120-139, 168-187, 219-241, 245-264, 271-293 and 303-325" FT misc_feature complement(602394..602483) FT /note="Signal peptide predicted for BB0573 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.902 between residues 30 and 31" FT CDS complement(602500..603375) FT /transl_table=11 FT /locus_tag="BB0574" FT /product="putative branched-chain amino acid transport FT system permease protein" FT /protein_id="CAE31074.1" FT /translation="MMFLTLLLVGIVSGVLGGLILALLSTGFNLALGVSRVVNFQHGAV FT VLWSMYAAYVLWEATGINPYLGLLLIVPVAFAIGYFLHRWLIIRSLQTPEDSQILFSIG FT LLIAFQYLAQFVYSTDARSLTEESLQHSLIIGPVILQYTQLAAAAVSLLVLVLLHLMLT FT RTDLGRKLHACAQNPVGARVAGLNVEHLSAVALGIAAACAAVSGTALATMAPIFPERAF FT EYSLAAVVVSVLGGMGSMSGSILGGLIVGVIIAVSQVTGHGDLALAIVYALVFLIFLVR FT PTGLISAVKR" FT misc_feature complement(602506..603357) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 3.4e-29" FT misc_feature complement(join(602509..602577,602611..602679, FT 602737..602805,602896..602964,603022..603081, FT 603115..603183,603193..603246,603280..603348)) FT /note="8 probable transmembrane helices predicted for FT BB0574 by TMHMM2.0 at aa 10-32, 44-61, 65-87, 99-118, FT 138-160, 191-213, 233-255 and 267-289" FT misc_feature complement(603283..603375) FT /note="Signal peptide predicted for BB0574 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.974) with cleavage site FT probability 0.568 between residues 31 and 32" FT CDS complement(603399..604688) FT /transl_table=11 FT /locus_tag="BB0575" FT /product="hypothetical protein" FT /protein_id="CAE31075.1" FT /translation="MRDKSPDGHRPVDAQVNQTRRRLTLGTGGLAAAMAFPAIVRAQPK FT RIPIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKSKGGAQIDLISVDHQSNPQM FT AGTQTERVIQVNNVLAVIGNVTSGATMVGSAVAEKSRTPMVSTDLGDSLTQRGMKYFFR FT IGAKASHLAATAVDFSEAMIKATGTKPRKVATMADDSTFSQDAIQGAIARIKKTDWDVQ FT ENVSFPAGKVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMASVHIAG FT APYTPEYVENLKKDAAFVTDAVGFVPELVANNPLLANYANAYKAKYRRDLDDQASLAVT FT CVGALYDALERAPDLSREALTEALRATDLQAGGNPFVLRDGVKFDQAGDNVRAKGLVMQ FT LLDGQQRIVYPADIATTKPVWPMPPWSKRT" FT misc_feature complement(603429..604511) FT /note="HMMPfam hit to PF01094, DE Receptor family ligand FT binding region, score 0.04" FT CDS 604968..605711 FT /transl_table=11 FT /locus_tag="BB0576" FT /product="TetR family regulatory protein" FT /protein_id="CAE31076.1" FT /translation="MQNTVDESSLVTRRRAQLVKAAIKLFSRMGYHAATVKDIADEAGV FT SAGLMYQYVSDKQDLLFLALQHIVQRNKEEMPLALKGVEDPIARLYRAIDAYTRVIAAN FT QQAVLLTYRETKSLKPEYIEQMKELELETNQLITECVTDCIRAGYLAQTHEELLVYRII FT VAAHAWPLKHWRLRHIVTLDEYLEQAIHAPWMGLLLPRGTSRYEELRRAGELCPTRIAS FT EPEVEDADQAPAPKAKKRARRSRAA" FT misc_feature 605019..605159 FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 1.6e-13" FT misc_feature 605055..605147 FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT misc_feature 605067..605132 FT /note="Predicted helix-turn-helix motif with score FT 1064.000, SD 2.81 at aa 34-55, sequence FT ATVKDIADEAGVSAGLMYQYVS" FT CDS complement(605748..606185) FT /transl_table=11 FT /locus_tag="BB0577" FT /product="hypothetical protein" FT /protein_id="CAE31077.1" FT /translation="MNETDIFEVELEDVYRYRLSYGGQSAYFHGLQNKTLIASRCSGCG FT FVWLPLRPICSKCYAPASEYPLSGKGEVITTIVLPQAPAHLAHLDAVIATALVRPDGAD FT TCIKAFMVVGENGAPPGTRVEARYLSKIRTIADFYFVPEQA" FT CDS complement(606182..607381) FT /transl_table=11 FT /locus_tag="BB0578" FT /product="conserved hypothetical protein" FT /protein_id="CAE31078.1" FT /translation="MKVGIVGVGLIPWRVRYADKTYYELALDVTKAALEDARLSPGDVD FT HVVWGLSDLMVAWVRQCCPSTTMQDYIGMAGKSSVHVSAGAVTGAMSVRQGMIEIMSGM FT SDVTLVVGSGKGMDLWDPEQNKRSSAFLKAIMLDLDTNWEVPVEPLAAANFGFAVQAHI FT DRYGAPTEAQMAKVSVKNHRNALANPLAQSGMELTVDEVMNSRRIAGPIKMFDCCLYSE FT GAAALILASEDRAREICDDPIWIEGAGASNLRSYMPDFDHLGRLPCQQQSAQRAYSMAG FT ISDPLRQLDFIETHDLLSGVELMSYAELGLCEPGQGGRLIDEGFTERSGPMPVNPSGGM FT IGCGHVAGCSGISRVGEIVQQLRGRAGGTQVPINQGRAIFSAIGGPGISQSCTIVLGKS FT " FT misc_feature complement(606194..606631) FT /note="HMMPfam hit to PF02803, DE Thiolase, C-terminal FT domain, score 0.00032" FT CDS complement(607422..608225) FT /transl_table=11 FT /locus_tag="BB0579" FT /product="conserved hypothetical protein" FT /protein_id="CAE31079.1" FT /translation="MLTAMNTPAHTLMPYDAALRSFPGLLRAPEAARTRLGVILPSVNT FT VVEPWFGQAVAADVRVHATRMLLASEVTAEALRRMDHEEGLDAARRIASCRPDAIAYCC FT TASSIVQGLDYDRRLRQSLEEATGKPCFTAVGAIIEALQACNARKIAIASPYTDAIDHA FT EKAFFEEAGFQVLNAANLNIAESFALAAPDARQMYELAQRAWHPDADALLISCLNMHAQ FT EVVGLLEQQLGRPVITSTTATLWKLLRSAGRADRIPGYGRLLAEH" FT CDS complement(608219..608986) FT /transl_table=11 FT /locus_tag="BB0580" FT /product="short chain dehydrogenase" FT /protein_id="CAE31080.1" FT /translation="MSQDFNDKVVLLGGASGGIGLAAARMMLERGARVALHYRSSADEL FT NKIAAQYGDERVLLVKGDLTRRQDVAAIVSATVERYGKIDAFMSTVGTALRILPFLETS FT EDTVDLTIAVELRSVIDSVRAVLPELIRNGGGRIVIIGSDSGKVGTSGESVSAACRGGA FT IAFAKSIAREYARHNVLANVVCPGPTDTGLWDDLVKNDEFGGKIGNAMVRAIPLRRTAR FT PQEVAAAAVFLVSDEASFITGQAISVSGGLTMC" FT misc_feature complement(608231..608971) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 3e-60" FT misc_feature complement(608903..608962) FT /note="1 probable transmembrane helix predicted for BB0580 FT by TMHMM2.0 at aa 9-28" FT CDS complement(609049..610206) FT /transl_table=11 FT /locus_tag="BB0581" FT /product="acyl-CoA dehydrogenase" FT /protein_id="CAE31081.1" FT /translation="MSIETSNLPGLKEEHELLRSQVRRFVEREVIPHAQAWEHDGHTPR FT PVIRRMGELGMLGMRFPESYGGADADTVASVVFAEELGRSTFGGFAITILTQTDTASPP FT IAAVGTPQQKARYLPAIVRGECLVAIAMTEPDVGSDIATLRTRAVRDGDEWVLDGAKTF FT ITNGVHADLYVVAARTDASARPSQGVSLFLVDKGTPGLRVERRLDKMGWKSSDTAQLSF FT DGCRVPAGALLGEPNRGFAALMRNVQNERLVLAAQALGESQAAIAQTLDYTRLRKAFGA FT TLWDKQAIRHRLAMLAARVESARHFVYSVAALDARGVECVKEVSMIKALCGELVNEVMD FT DCVQFHGATGYMQGTAVERMYRDARVHAIGGGATEIMLEEVAKRM" FT misc_feature complement(609055..609498) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.8e-46" FT misc_feature complement(609508..609816) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 5e-46" FT misc_feature complement(609820..610176) FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 1.1e-24" FT CDS complement(610218..610970) FT /transl_table=11 FT /locus_tag="BB0582" FT /product="short chain dehydrogenase" FT /protein_id="CAE31082.1" FT /translation="MFDLSGKTALVTGASRGIGQNVALCLAQAGANVVLWGRDQAELEQ FT TRVRIDEYGVQSTIDAFDITEAESVRRATAQAIERFGHLDVLVVNAGVNVLRPFLDWTP FT QQWDHMIGVNLVGAMHTLQAVGRHMTERKQGSIITMSSIYSHVGAPDNSVYCLTKGGLL FT QLTKSLAMEWARHKVRVNAICPGWIETDLTAPYMQDEQVRAAGLKQIPLRRFGQPADIG FT PIAVYLASDEAQWTTGQSFVVDGGQIAR" FT misc_feature complement(610230..610958) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 1e-80" FT CDS complement(610988..612673) FT /transl_table=11 FT /locus_tag="BB0583" FT /product="putative ligase" FT /protein_id="CAE31083.1" FT /translation="MALENYRMTDHSKNPLQFGFPLGAGLAAPSEDPLPLGERVAAKVL FT ARQAEAAPDRPFVYFNGQWLTYAEADRRANRAAHALAAAGVKPGDRVAIDLHNRLEYLD FT LWFGLSRLGAIQVPINTDYRAPQIAHTFKRSGIDAVVVQAALLPELEAALEGLESRPAL FT LLLDAAPAQVSAARGFDYAELVAAASDAPVPGCADVSGADIGAVMNTSGTTGPSKGVLL FT THAQQYILGRMMAADMHLGPDDVYYNYFPLFHNTAQAMLTIPVMLVGARMVLTERFSAS FT RFWPEVREHGCTAFYYIGEILHILLKSTTREDSKGSTLRVGWGIGGAADDLVAFRERFG FT VDLRSGYGSTEANVPCYVPHGSAKAGSAGRAAPGFEIRIADEHGQALPADSVGEILVRA FT AEPGALMAGYDGDPAATVAAWKDLWFHTGDSGKLDADGDLYFTGRIKDAIRVRGENVSA FT FEVERAISEDAAVLEVAAIAVPCELGGDDVKIVVVVRDGVQLEPQALVEHALARLPRFA FT VPRYVEFVDALPKTPTNKVMKHVLRAQPFTTNTWDRLQTPRSGT" FT misc_feature complement(611246..612478) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 2.1e-104" FT misc_feature complement(612020..612055) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(612724..613341) FT /transl_table=11 FT /locus_tag="BB0584" FT /product="hypothetical protein" FT /protein_id="CAE31084.1" FT /translation="MVTMEPPSAMEEEFNEWYDTEHLPERAAVDGFETARRYVCLDGFP FT RYMAAYDLSSPAVLEGESYRNMAGERFSPWSQRILRKAKGLWRVTGEQVYPGQARACEA FT PRLLLLHYRGVPQAAAARLVDELRATYEPHAQVSQLRVIRYQSGAGEPPGHVALIEGKG FT SLGALRGPALEGENGRCIVVANEYARYWAYAPNPVLGKVLDD" FT CDS 613492..614298 FT /transl_table=11 FT /locus_tag="BB0585" FT /product="enoyl-CoA hydratase/isomerase family" FT /protein_id="CAE31085.1" FT /translation="MNYDDFKHIDFDRRPDGVLLATLNRPEVMNATNARLHWELSKLWN FT VINDDASVKVVVVTGAGDRAFSAGGDLEWIEGMIGDPEVVTAVMKEVADIVYNMLACEK FT PIISAINGTAVGAGLAVALLADVSVIAEDATFTDGHARIGVAAGDHAAIVWPLLCGMAK FT AKYYLMTADFINGREAERLGLVTFAVARDELMERAMAIAAKLARGSQTAIRGTKKALNN FT WMYMAGPIFDASLGIEMLGFLGADAREGLDAVRNKRAPDFPSARLP" FT misc_feature 613546..614061 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 3.5e-33" FT misc_feature 613810..613872 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 614487..615470 FT /transl_table=11 FT /locus_tag="BB0586" FT /product="putative exported protein" FT /protein_id="CAE31086.1" FT /translation="MGSSIFRRAVPVLAMLAFSAFCAHAGAAPFPNKDRPVRLIVPFTA FT GSSFDAGARAYAQALSEDLGANVVVENRPGADGVIGVSAAKTAAPDGYTILFTSLSTQV FT VNPHIFKKLAYDPINDFIPLIGTMKTTLVMAVGPSFPQGTAADFLEAARKNPGKHTYAS FT YTATTKMAGQMVAKAAGVDYLNIPYKSLNDAMSNMLGGLVDMIAADMPSIQPFFSKGVR FT PLAVLAPARLSAYPDIPTLAEYGLADVDIAGWFAAYVPKGTPADVTQILTDSLRKAAKS FT KYVGDFVTTFGIETFPLEGEALSTYQKAELEKWGKAVRDAGLYGTL" FT misc_feature 614487..614567 FT /note="Signal peptide predicted for BB0586 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.739 between residues 27 and 28" FT misc_feature 614643..615455 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.3e-62" FT CDS 615473..616045 FT /transl_table=11 FT /locus_tag="BB0587" FT /product="conserved hypothetical protein" FT /protein_id="CAE31087.1" FT /translation="MQGDPMAGCIEEIRDRMAIQDVILKYARAIDRKDWSAVRAAFHEG FT ATDDHGEYRGGIDGMIEWIARRHAAIHQSMHFIGNLLVEWLPGRRALVETYYQAHFTLD FT GDAREARALWLDGQAGGGANLIVLGRYIDVFAARPDWRVAERTNVYESVLAPQQPPSGR FT NPANHWSTRDRHDMYFKIRRDLLPDAP" FT CDS 616063..617826 FT /transl_table=11 FT /locus_tag="BB0588" FT /product="conserved hypothetical protein" FT /protein_id="CAE31088.1" FT /translation="MAARRQDMLGQGRSPSLAEECMTTEDKVDLLVIGSGAAGLSAAIT FT ARKLGLDVLVVEKTPVLGGTTAVSGGWAWIPCSPVARRAGVEDSTEQAATYLKHELGEA FT YSAPHVEAYLKHGPEMVAFLEDATEVRFLASPTFPDYHSEAPGAAMGRSIVAQPYDARL FT LGKHIKLLRRPLRQTTLFGLNIGSGTELGHFFNATRSVKSAYIVSKRLAAHCRDLLLYR FT RGTRLANGNALAARLINSAMDAGVRFSVSTQVERLEREGGRVTGAWVSIDGKPARRIRA FT DRGVVLACGGFSNDAALKQELFRHVAAGRPHASPVIASNVGDGLRLGMSAGGVVRNQLP FT DNAAWMPVSLVPMPGRETAAFPHVIDRAKPGMIAVLRDGKRFVNESHSYHDFGRAYIKS FT GSDGDIFLICDRRALRRYGLGFVKPFPFPVGKHVKSGYLIRGESIADLAGKAGIDAANL FT AETLARFNAGAPSGIDPEYGKGSTRYNRFQGDGGHAGNPCVAEIRSAPFYAVRLLIGDI FT GTFAGLATDEHARVLDGDGRIVAGLFAAGNDMQSIMGGNYPGAGINIGPALTFGYIAAR FT AAASSDAGRPG" FT CDS 618085..618972 FT /transl_table=11 FT /locus_tag="BB0589" FT /product="conserved hypothetical protein" FT /protein_id="CAE31089.1" FT /translation="MTTQVKPIRSFLFVPGNKESMLDKAALAKADALILDLEDSVPPAE FT KLAARELVARKIPALIAQGQRIWVRINRSAHIYDLDDILAVAQPGVEGVVISKPWGPED FT VYMASSMIAEAETRANLPLGSIGLIPLLETARSMQLCYEIAQMPRVVGIVGATAKNADM FT GRALKFVWTPEGRETEYLKSRVVMAARAAGKQAIGGIWQQIKDLEGLARSSAFDRQLGM FT SGELALHPMQVETINRTYTPTAEDVAYYQGMIDALDAAQAQGRASVMYDGEHIDIAHVK FT TAHEVIALARAFDA" FT CDS 619008..619463 FT /transl_table=11 FT /locus_tag="BB0590" FT /product="conserved hypothetical protein" FT /protein_id="CAE31090.1" FT /translation="MAGLYFEDFKTGMVVEHAIRRTVTETDNVLFSAMTYNCAPLHIDA FT EYSANSIYGQRLVNSMFLLALVAGITVYETTLGTTLGNLGFGEIAFPKPTFHGDTIRVE FT TEILETRLSRSRQDSGIVTFKHVARNQRDEIVCTAVRTGLMMLRPAA" FT misc_feature 619029..619397 FT /note="HMMPfam hit to PF01575, DE MaoC like domain, score FT 2.4e-14" FT CDS 619489..620655 FT /transl_table=11 FT /locus_tag="BB0591" FT /product="acyl-CoA dehydrogenase" FT /protein_id="CAE31091.1" FT /translation="MNYQLSEEQQSIVDAAEKICADFPHSYWREKDKKHEFPHEFFEAV FT ASGGWLGICMPEEVGGANLGVTEAALFMRVVAECGGQAAASSIHMNIFGLQPVVHFATQ FT AQKQAWLPPFGRGEHKACFAVTEPDPGLDTTKLKTVARKQPDGSYLITGKKVFISTAQV FT ADHMLILARTTPIEEVKKHSEGLSLFYTKLDRNYVDIREIDKLGRGAVDTNELFIDNLP FT VAKDALIGEEGKGLSYIFHGMNAERVLVAAEQVGMGRAVLKLATQYAKERVVFGRPIGK FT NQGIQHPLARSWAELEAANHMMLAAADLYDRGESCGSEANAAKLLASEACMQACQNSIL FT THGGYGYAKEYHVERFMREAWIGYIAPVSPQLVLSNIAERKLGLPKSY" FT misc_feature 619501..619854 FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 3.7e-06" FT misc_feature 619858..620175 FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 1.5e-07" FT misc_feature 620185..620634 FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 5.3e-53" FT CDS 620748..621986 FT /transl_table=11 FT /locus_tag="BB0592" FT /product="CaiB/BaiF family protein" FT /protein_id="CAE31092.1" FT /translation="MAVTGPLEGIRVLDLTVALAGPLGSLLLGGLGAEVIRVESPGGGD FT IARNNPPYVGKDGIHFGVRHEDEVSLTTLNRARNKKSVTLNLKTEQGRALFMELAKECD FT VLIENASEGTTARLGVDYESVRKANPKIIYASVKAFGEPSPYPKLKGMDIIVQALSGIM FT DVTGVADGPPTRWALPIADMVAPLYAVNGILAALIHRGKTGEGQCVQVSMLDCLASLVA FT EEHFDVFMAHGYPKRSGNFHDRLVPFGVYGTSDGHVAMVAFQPDWFGSLMQAIGKPELA FT EDPRYATRGPRMKHATEINAMIEDWTRRHTSAEVIHELQEKRGVPAAPVRSPQEVLQDP FT ALRQRGAVVKLEHPGLANIDAMGMGLPIQFSGTPSSFGQPAQELGASNNEIYQGLLKLS FT DAQLDQLRGAGVI" FT misc_feature 620994..621563 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 7.4e-58" FT misc_feature 621333..621356 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 621988..623163 FT /transl_table=11 FT /locus_tag="BB0593" FT /product="CaiB/BaiF family protein" FT /protein_id="CAE31093.1" FT /translation="MGDAAKAGHRPGPLAGVKVVEIAGIGPGPLAAMFLADLGATVIRV FT DRKQPSGLGAPRPVQFDLGLRNRKSIRVDLKDPAAVEMVLELLGQADALIEGFRPGVME FT RLGLGPDACLARNPRLVYGRVTGWGQEGPLAKAAGHDLNYISITGALHAMGRAGQAPTP FT PLNVLGDYAGGSLYLAFGLLAGILEARGSGKGQVVDAAMVDGVASLMTVIMGMHGAGMH FT GKQRGTNLVDTGAPCYEVYECADGKYVSVAPIEDKFYRLLLEKLQLQDHPLLQEQMDRA FT AWPQAKQVLAARFRERTRDEWTELLGASDACLAPVLDFDEALAHPHIRQRGTLTDIEGV FT VHPAPGPRFSRTPAGRPEPPAPLSTGNAVAALRGWLPDEHILAYQERQTFI" FT misc_feature 622198..622773 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 8.6e-68" FT CDS 623174..624148 FT /transl_table=11 FT /locus_tag="BB0594" FT /product="putative exported protein" FT /protein_id="CAE31094.1" FT /translation="MTIARTLFGAAALAMLAVLASPAMGADFPDGKPVRIIVPTGVGSG FT TDLTARQIAASMGKAWSVPVVVENKAGASGMIGTEFVAKATPDGYTLLATYAQHYTNQL FT VMKTPYDAVKDFEPVARVANSALVISVSTSSPYKTLGDVIEAARKKPGVITYGSSGNGT FT TSHLAATLFEEMTKVKLNHIPYKAPGQVALDAASGQIDLSFNGMSSVLPLIKGGRLRAL FT AVTTLQRSQSLPDVPTVAESGYPGYETASPIWLFVPRGTPQAIVDRLSAGVTAAAGTTE FT FQDLCRQQGLEVDIQDAATAKAAGPGELEKWRKLMSTAGAPKG" FT misc_feature 623174..623248 FT /note="Signal peptide predicted for BB0594 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 25 and 26" FT misc_feature 623318..624136 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 8.4e-82" FT CDS 624159..624581 FT /transl_table=11 FT /locus_tag="BB0595" FT /product="hypothetical protein" FT /protein_id="CAE31095.1" FT /translation="MADLCDIAQPALDAVCAEWNRAGARWDADGLAATYCEDGLLFGGR FT PGHYVGRESIRAYFATYDGVILAGGMTLSETALRTLGEDCILAQGMVCFAFTLAGQAQT FT RSTLRATLVLRRDAGRWRILQHHFSSEPAAPPLGQD" FT CDS 624601..625284 FT /transl_table=11 FT /locus_tag="BB0596" FT /product="nitroreductase family protein" FT /protein_id="CAE31096.1" FT /translation="MTAGHADIEALKRLSAGRSTCRAYLPRQVPEAVIRDIVDVARRTA FT SWCNTQPWQLVVASGASTDRFRQALMEQARRHPELDSDLPFPAEYRGVYLDRRRRSGLQ FT LYEALGIERDDKARRASQSFENFRLFGAPHVAIVTVARELGAYGAVDVGGFVGAFLLAA FT HAHGVATTPQAALAMQSGFIRRYFGLDEGRAVVCGISFGYADRAHPVNGYRTERAGLDD FT ILQMV" FT misc_feature 624628..625170 FT /note="HMMPfam hit to PF00881, DE Nitroreductase family, FT score 0.0028" FT CDS 625319..626092 FT /transl_table=11 FT /locus_tag="BB0597" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /protein_id="CAE31097.1" FT /translation="MTLLIDNPAPHVRRLTLNRPERMNALDGPTLQMLNDAVRECGAAA FT DVKVLVIRGQGRAFCAGNDLKWLAGGVLADRAAHMRHQDLMQDTYERLESAPQIVLASV FT NGYAMAGGFELALACDLMIADAQAQLGDEHIRRNLLPSGGSSQRLPRKLGLQRAMYYLV FT TGRRMTGQEAVELGLAAQAVPAEQLERATLELAGEIARADALALASMKEMVRKSMELPL FT SDGLRHERWMQHRYRTQSPSLEAGVARFAGGRKDG" FT misc_feature 625355..625870 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 2e-40" FT misc_feature 625619..625681 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 626248..627417 FT /transl_table=11 FT /locus_tag="BB0598" FT /product="extracellular ligand binding protein" FT /protein_id="CAE31098.1" FT /translation="MKTSFHLAVTLKSGFAIAMLAAATLSHAETIKLGMSIPLSGSGAN FT WGKGSEWLCAKAAEEIKAAGGVKVQGKVYDFECVGYDNKYNAAEGAKVAQALVSRDGVK FT YVAGSIGVAPVRALQSLTERRGVLLFTAAWGNSIKGPKFPLTFTQMNSVNEISEPMIAH FT VKKLHPEIKTVVLLNPNDATGQETEKVAKAAWEKNGVKVLASDWYERGTSEFQPIAAKL FT NSLKPDLVDLASTPPADAGLVFRELKALGWNGVKVVEVGTGADGLLATGKDAVDGTYLG FT AAVAVDGLSAHQKALNDGVKKVTGENINSVQIGFYDSVYAIKAAMEKAQSVDPQQVAKV FT MPDVKFQSFFGEVDFGGKSVYGSDQQMQLPVIITQISGTALKEVGRVQK" FT misc_feature 626248..626331 FT /note="Signal peptide predicted for BB0598 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 28 and 29" FT misc_feature 626320..627381 FT /note="HMMPfam hit to PF01094, DE Receptor family ligand FT binding region, score 0.055" FT CDS 627434..628309 FT /transl_table=11 FT /locus_tag="BB0599" FT /product="putative branched-chain amino acid transport FT system permease protein" FT /protein_id="CAE31099.1" FT /translation="MQDNLQLLFTALQISSVYILFSLGLTIIFGVLKVVNFAHGQFFTF FT SALVLSLALSWLAPHVGNPFVVYLLAGLAGLAACLLFGLVLYQFGFKRLERDMIGSFIL FT SAGLVLFFEGLMLEIFGGAVRPVPALIDGNVDLLGLSVSKQRLVLFVFAVALTTLIITL FT LRSTKFGKALRAVAIDHEAAMLQGIAYRKIALYGFLIATGVAAIAGMLIAPVAAVTPTL FT GDSYLVKGFIAVVVGGMGSIVGAIFGSLLIALLESFIGFYFDPSAANLTIFVIVMLVLL FT IKPKGFFGND" FT misc_feature 627443..628303 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 2.8e-32" FT misc_feature join(627461..627529,627542..627610,627623..627691, FT 627728..627796,627872..627925,628013..628081, FT 628124..628192,628211..628279) FT /note="8 probable transmembrane helices predicted for FT BB0599 by TMHMM2.0 at aa 10-32, 37-59, 64-86, 99-121, FT 147-164, 194-216, 231-253 and 260-282" FT CDS 628302..629198 FT /transl_table=11 FT /locus_tag="BB0600" FT /product="putative branched-chain amino acid transport FT system permease protein" FT /protein_id="CAE31100.1" FT /translation="MTKSKDLVFILFIAAVLVGCIALGSGYIGNLVVWMSVAAVMATSL FT RFVLLIGELNFATAAFFGIGAYCTGYIANYLDLPFFLILALSALLALAVSVVFGCITLK FT VKGPYFLLIGFAFTEALRILYTRTDVLGGNSGLVGIFPPIWLEAHYHYFATVLCFALIV FT ALLFVERSNLGKVFVAIRDNENVVRSLGIPVFMTKVLCFAVASAVAGLAGSVHAYASNV FT ISPLDFGFMLSTFALAYLKVGGEDSPLGPIIGAVLLVGIASYAQTLGGNEHILYGLAII FT VSVLFMPKGLMGLFKSR" FT misc_feature 628302..628424 FT /note="Signal peptide predicted for BB0600 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.347 between residues 41 and 42" FT misc_feature join(628320..628388,628398..628451,628470..628529, FT 628539..628607,628626..628679,628737..628805, FT 628866..628934,628962..629021,629040..629108, FT 629118..629186) FT /note="10 probable transmembrane helices predicted for FT BB0600 by TMHMM2.0 at aa 7-29, 33-50, 57-76, 80-102, FT 109-126, 146-168, 189-211, 221-240, 247-269 and 273-295" FT misc_feature 628329..628361 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 628371..629189 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 1.5e-06" FT CDS 629208..629957 FT /transl_table=11 FT /locus_tag="BB0601" FT /product="ABC transport system ATP-binding protein" FT /protein_id="CAE31101.1" FT /translation="MQTGSMLLTGQNLSKQFKGLLAVSGVDIRIARGEIVGLIGPNGAG FT KSTTFNLLSGFLRPTSGSLEIAGADMSKAKPERISRQGLVRTFQHGSYLPSMSVRDNVL FT IGCLGGRRTGRVAASEQEQVIAQAIALFGLAGHENDIARNLPHGLQRLVSMAMAFAARP FT SLLCLDEPLTGLNQTEVAETLGVYRRLKSEYAMSILLVEHNMRAVMNICDRIYVLHHGE FT IIFSGTPDEVKASETVLKAYLGEAHGL" FT misc_feature 629304..629870 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 4.7e-41" FT misc_feature 629325..629348 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 629947..630666 FT /transl_table=11 FT /locus_tag="BB0602" FT /product="ABC transport system ATP-binding protein" FT /protein_id="CAE31102.1" FT /translation="MASENTLTVRKLSVSYGTVPAIIDVDLEVKGGSIVSLIGANGAGK FT STLIKAITGLVKVAGGEIHYGGKPLANREPNVILGHGVALVPEGRRLFGSMTVRENLEM FT GAYRIDDARRRAELLATCLHYFPDLEAKLPSPANALSGGQQQMVAVARALMSAPSMLLL FT DEPTIGLAPAFVNVISKVVRDINQQGVSVLLVEQNAEVALRVSDYSYVLESGTVVKHGP FT AEVFLNDPDIKKAYLGL" FT misc_feature 630040..630591 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.7e-47" FT misc_feature 630061..630084 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 630364..630408 FT /note="PS00211 ABC transporters family signature." FT CDS complement(630681..632651) FT /transl_table=11 FT /locus_tag="BB0603" FT /product="NADH:flavin oxidoreductase / NADH oxidase family FT protein" FT /protein_id="CAE31103.1" FT /translation="MSMYRRIFSPLRIGGIEIPNRIVRTAHATRLAQGYVNDDLIAYHL FT ERAKGGAGLSILESTSVHPSSTFSLSAADDGAIAPMRRLADAIAPTGMKLFTQLWHGGY FT TDPAADGGLPWAVGPLPGRYSVAPPIPMTTEQIGELVEAYGKAAARMQAAGLHGVEVLA FT GAGYLFSQFFSPVLNQRDDAYGGSFENRIRALLETLRAIRAATSPDFALGVRIGGSTDA FT RILSTDDVNAIALRAQAEGLIDFVNITHGDYYFHVERYAGMDRPVGYQLPASDHVSQGI FT TVPRIIVGRYATLDDAEQALKEGHAEMISIVRGMIADPMLVAKARDGRGTEVRPCISCN FT QGCIGGVFTGRMRCAVNAAVGDERRLAEDLIVAAAQPRKVVVVGGGVAGMEAARVARLM FT GHRVTLIEAASDLGGLLNTARHLPKLHLIGDIAIWLESEIYRLGVDVRLATYVEADEVL FT AEQPEVVIVATGSQPVDAGEFRQTADPAAALAIAPDARVLTSFELGMESRGDFGKTALV FT FDDVGHYEAIGCCEALIEAGAEVTYVTRHQMFAPAVEGTGRTQAALQRFYKAGNFRIVT FT QSALVSIERGSAQIRSLYGERTETVAAETVVLAGYRQSQNEVWAALRARVPQLHIVGDA FT LSARDIQPAIREGHLAARSIT" FT misc_feature complement(631656..632636) FT /note="HMMPfam hit to PF00724, DE NADH:flavin FT oxidoreductase / NADH oxidase family, score 1.9e-48" FT CDS complement(632648..633430) FT /transl_table=11 FT /locus_tag="BB0604" FT /product="short chain dehydrogenase" FT /protein_id="CAE31104.1" FT /translation="MDMKIAGQRVLITGASQGIGAGLAQAFAAEGCHLALTARSADKLQ FT ALAQDLRGRHGVQVDVLPLDMTQPGAVDQVAAFAGDIDVLVNNAGAIPGGNLWDVDAPA FT WRQGWELKVFGYIDLARAVYPRMKARGHGVILNNIGNGGQNPDFNYIAGSTGNAALMAF FT TCALGGRSLEDGIRVIGVNPGPVATERIAKVLRSHAARLLGDEQRSDELLAGYPLGRTA FT TVAEVADLFVYLASPRSAYTSGTIVTVDGGISSKRSVA" FT misc_feature complement(632672..633415) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 2.9e-46" FT CDS 633717..634682 FT /transl_table=11 FT /locus_tag="BB0605" FT /product="putative exported protein" FT /protein_id="CAE31105.1" FT /translation="MINRRFFCLAIVSAALPMWAQAASYPNQPVRVIVSNAPGTGTDIT FT ARFLANQVAGKLGQPTVVENKAGAGGVLATDFVARTEPDGYTVLFSTGAHFMLPAIYSK FT LNFDAKADFVPVGVFAQSPMVVFVPADSPFRSIEDLVAAARKAPDTISYSSPGVGTSSH FT LAAVMMFNQAKVDLRHIPYKSASQAAMEVASGQAQVGINGTGVTLPLLQAGKIRILAVT FT SLKRSASLPEVPTLDESGLKGYDFVAPILALVRAGTPAPIVQTLGDAFTAAAAQPEFKE FT LCLKQGLDVAIQGPAELKVSAPKEFDKARRLSELAGVQAR" FT misc_feature 633717..633782 FT /note="Signal peptide predicted for BB0605 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.902 between residues 22 and 23" FT misc_feature 633849..634670 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.3e-82" FT CDS 634694..635977 FT /transl_table=11 FT /locus_tag="BB0606" FT /product="acetyl-CoA hydrolase/transferase" FT /protein_id="CAE31106.1" FT /translation="MEKRLLIDRLQGLLRAGDALWWGQATAEPLTLTRAVTEHRHALAH FT GGRLKVFVGIGASDTLHPGLADAIDFFGYTASGTHRKLAQAGVLDIVPSHYSQLPALIR FT AGVLPADVVLLQVSPPDEDGRYSLGLVHEYLTAALQRARVVIAEVSPEIPWTHGSVHLR FT AGDFDLLVDAAHPPLDAASAEPGPVERAIAGHIAAHVQDGSTLQVGIGKLPEAVLSALY FT DRRDLGLHTGAAGDGIVALAEAGALTNARKGRDEGVGVAGVLTGGARLRKWAHRNPRLM FT LQGTDYTHDPQVLASLNQLVAINSAVEVDLTGQVNAEVAGGVYVGALGGAVDFLRGAAR FT SKGGVPIVALPATARGSTRIVAQLSGPVSTPRCDAGLIVTEHGVADLRGLSLSRRVRCM FT LDIAAPEHRAELERQAHEALARCGAAFA" FT misc_feature 634694..635968 FT /note="HMMPfam hit to PF02550, DE Acetyl-CoA FT hydrolase/transferase, score 1.7e-35" FT CDS 635991..637511 FT /transl_table=11 FT /locus_tag="BB0607" FT /product="AMP-binding enzyme" FT /protein_id="CAE31107.1" FT /translation="MASEVNREMAERIHELLDRWLIEAPQRAFIHLPDRTLSYADLGGM FT AERLERELRADGVRAGDRVLVVAENCAEHAALLVACSRVGAWSCGVNARMAQGEVEAYA FT AKADARVTYFTAGVSQAAAAHAVRHDVRPSCIDGLARSALRAEAVAETGPLAGEVAAII FT FTSGTTGTPKGVMMTHRGVLHFARVSAESRALDARDKVYAYAPMTHIFGLGTVLLASLH FT AGAALEMRPQFDPAELFDALAHRGVSQVQGPPALFARLLQYCAEHGIARPEAPRLRYLY FT AGAGPLDMALKRKVEAVFGQTLHHGYGLSEYAGSLHATRLGESRADTSSGYAFAGAQLR FT IVDPATGHALPAGERGEIWLRGVGLMPGYFRDAQATAEAMRDGGWYASGDLGELHADGA FT LFVVGRIKEMIIRSGFNVYPAEVEQALNGFAGILRSAVVGQKEADGNEAVIAFVVEDRA FT NPPDMAALRRHLRTQLAPYKRPARIIAIDELPVSANGKLQRRRLLEQL" FT misc_feature 636102..637301 FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 2.3e-97" FT misc_feature 636474..636509 FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(637524..638333) FT /transl_table=11 FT /locus_tag="BB0608" FT /product="IclR family regulatory protein" FT /protein_id="CAE31108.1" FT /translation="MTSLPDTVDEHDSESAALMTVERGLKVLRAFRSDRTPLSNAELVR FT RTGLPKATVSRLTSTLLQVGFLRQVPGRREFELAAGSLGIGHAYLDTNEMLQAAQPLLQ FT NLADQLDVSVALGIQDGLDLLYIGYRVSRKVATLRLGVGSVLPMSTTSIGRAYLWALPC FT DQQRQLIAEYKRHAGDEGAALERSIHASFDELASTGTCAVMGGYQRRTFGVAMPIWAGR FT QRIPISMSCGKADVELDLQAERERIAPALKQTAAALQELLADFDGQL" FT misc_feature complement(637551..638108) FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 4.8e-08" FT misc_feature complement(638157..638222) FT /note="Predicted helix-turn-helix motif with score FT 1364.000, SD 3.83 at aa 38-59, sequence FT LSNAELVRRTGLPKATVSRLTS" FT CDS complement(638330..639139) FT /transl_table=11 FT /locus_tag="BB0609" FT /product="IclR family regulatory protein" FT /protein_id="CAE31109.1" FT /translation="MLSRFPDPAPAAQSRRPTVAPFARALSVLASFSSRDQWLSNSEFV FT ARTGLPASTVTRMTSTLVTLGYLHCAPDTRRFCLSPSVLALGYGAAVDAEIHRPTNQLM FT RVFAEHHQVNVQLSCRDRLDLVVMDSCLTDALPALLQPGVGTRLGMASSAAGWALLACL FT PEAERDYLLRARPHAPAEPKSDWNPMRRHANEAILQVRNDGFCVALGESGHPMTMVAAP FT IRRPGLAPLAVSCMGPATRIGRARSTRELGPALVRMVEEIQRVWNTS" FT misc_feature complement(638345..638911) FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 1.2e-07" FT CDS complement(639355..642858) FT /transl_table=11 FT /locus_tag="BB0610" FT /product="putative pyruvate carboxylase" FT /EC_number="6.4.1.1" FT /protein_id="CAE31110.1" FT /translation="MTTAIKSILVANRGEIAIRAMRAAAELGIRTVAIYANEDRFSLHR FT FKADESYPIGQGRRPIEAYLDIPGILDIARRAGVDAIHPGYGFLSENPDFAQACADAGI FT AFIGPSPAVLRSLGNKVAARNLAISLGVPVVPATDALPHDDAACLRLAREVGYPLMLKA FT SWGGGGRGMRAIHDEAELLPAIASARREAGAAFGNDEVYLEKLVQRAHHVEVQVLGDQH FT GNLVHVFERDCSVQRRNQKVIERAPAPYLGDAGRQALFQAALTLTRGVGYTHAGTVEFL FT MDADTGNFYFIEVNPRIQVEHTVTEEVTGLDIVKAQIRVTEGVRIGEDDYLPAQEHIRL FT SGHALQCRITTEDPRKDFAPDYGRITAYRSAAGPGIRLDAGTAYTGAVITPYYDSLLVK FT VTARGHTPEETSQRMDRALREFRIRGVATNLAFLENVIAHPQFSQGKCTTRFLDTTPEL FT FEIAPRKDRASRLLRFIGEVVVNGHPEMQGRTPPAAPLARPALPKADLAAPLPAGTRDR FT LLELGPAAFSAWMRTQPRTLLTDTTMRDAHQSLFATRMRTTDMLAIAPHYARLLPELFS FT LECWGGATFDVAMRFLKEDPWDRLRKLRAAAPNILFQMLLRGSNAVGYTNYADNVVRYF FT VQQAAREGIDLFRVFDSLNWVENMRVAMDAVIESGALCEGTICYTSDIFDASRPKYQLK FT YYVDMARQLERAGAHIIGIKDMAGVCRPPAARALVQALREEVGLPLHFHTHDTSGGSVA FT SVLAAAEAGADAVDGAMDAMSGLTSQPSLGAIIAGLQHTGHETGMRHESIAPFSRYWEN FT VRRYYAPFEADMRSGTSDVYRHEMPGGQYTNLREQARAMGLDARWDDIARCYADANQLF FT GDIVKVTPSSKVVGDMALFMVAGGITAADVLDPERELSLPESVVSMMRGELGYPADGFP FT PALQQRILKGEAPLEGRAGAHIPDVDLEAERGRAEKATDGPVSDADLASWLMYPKVYAD FT YAAHQRSYGDVCAIPTPVFFYGLAEGEEMAIDIDQGKTLLIRLLGRAEEKGGSEHRLFF FT ELNGQSRSVRVARAGLAGAQDQARPKAQDGNAGQLGAPMPGMVSAVSVRAGQAVRRGAP FT LVTIEAMKMENTLCAERDGVVSRIVVAVGDRIEAKDLLLEFAPQAAQPADVPRQRPRAG FT A" FT misc_feature complement(639415..639618) FT /note="HMMPfam hit to PF00364, DE Biotin-requiring enzyme, FT score 2.4e-15" FT misc_feature complement(639742..640368) FT /note="HMMPfam hit to PF02436, DE Conserved carboxylase FT domain, score 5e-85" FT misc_feature complement(640381..641235) FT /note="HMMPfam hit to PF00682, DE HMGL-like, score 7.9e-41" FT misc_feature complement(641500..641823) FT /note="HMMPfam hit to PF02785, DE Biotin carboxylase FT C-terminal domain, score 4.4e-57" FT misc_feature complement(641842..642504) FT /note="HMMPfam hit to PF02786, DE Carbamoyl-phosphate FT synthase L chain, ATP binding domain, score 1e-94" FT misc_feature complement(641965..641988) FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT misc_feature complement(642346..642390) FT /note="PS00866 Carbamoyl-phosphate synthase subdomain FT signature 1." FT misc_feature complement(642508..642849) FT /note="HMMPfam hit to PF00289, DE Carbamoyl-phosphate FT synthase L chain, N-terminal domain, score 2e-42" FT CDS complement(642901..644049) FT /transl_table=11 FT /locus_tag="BB0611" FT /product="acyl-CoA dehydrogenase" FT /protein_id="CAE31111.1" FT /translation="MIRDQETLNGLLDTISRFVRERLIPNEELVAETDEIPADIVADMK FT AMGLFGLTIPERFGGLDLTMEEEVLVVFELCRASPAFRSLLGTTVGIGSQGILFDGTPE FT QQEKYLPRLATGEIMASFALTEPEAGSDAASLRTTAIKDGDAYVVNGTKRFITNAPHAG FT MFTLMARTNPADKGAAGVSAFIVDAGTPGISFGKRDRKMGQKGAHTCDVIFENVRVPAA FT NLIGLKEGQGFKTAMKVLEKGRIHIAAVCVAVAERMLDMALRYAAERKQFGQPIGTFQL FT VQAMLADSKAEIYAARSMVLDAARRRDDKLPNSTEASCAKMFASEMCGRVADRAVQIFG FT GAGYMSEYAIERFYRDVRLFRIYEGTTQIQQTVIARNMLREL" FT misc_feature complement(642913..643362) FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.5e-73" FT misc_feature complement(642982..643041) FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT misc_feature complement(643375..643683) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 1.2e-51" FT misc_feature complement(643645..643683) FT /note="PS00072 Acyl-CoA dehydrogenases signature 1." FT misc_feature complement(643687..644046) FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 7.5e-12" FT CDS 644138..645163 FT /transl_table=11 FT /locus_tag="BB0612" FT /product="putative enoyl-CoA hydratase" FT /protein_id="CAE31112.1" FT /translation="MELDWRPLHGQARGMSLRAFAKVRNKVRIVVDRNRRRFHRMRQFL FT AYLPAMSIDPRHLLARSFPVIEHAYSLRDTALYALGLGLGADPMDGGQLRYVYEGQDGK FT SLRAMPTMANILAYPGFWARESDTGITWQKLLHAEQEIHIHAPLPASGRVTGATRITGL FT WDKGPGKGAFLQQTRDITDAASGQLLASVVQLSLLRGDGGFGEGGSAGAPPAAHAMPEG FT APDHVCELATPAQLALIYRLSADLNPLHADPAVAAAAGFARPILHGMALMGVAAHAVLR FT TVLDYDDTRFQGMRVRFTAPAWPGDTLRTEMWVDGNTVSLRTIAVERDVVVLNNSRVDL FT R" FT misc_feature 644780..645145 FT /note="HMMPfam hit to PF01575, DE MaoC like domain, score FT 5e-27" FT misc_feature 644930..644962 FT /note="PS00639 Eukaryotic thiol (cysteine) proteases FT histidine active site." FT CDS 645189..645938 FT /transl_table=11 FT /locus_tag="BB0613" FT /product="putative short chain dehydrogenase" FT /protein_id="CAE31113.1" FT /translation="MDLGLTGKVAIVTGSARGLGAATARRLAEEGAKVVITDINAELAQ FT ETARRMQDDGLAAHCIIGDVTKAADVQRLVEETVAHFGGVHILVNNAGAPRDKYLVKMS FT EDDWDFVMAVMLKGAFLAAKAVMPHFIEQGWGRVINISSRAHLGNPTQANYSAAKAGLI FT GLAKALSKEEGRYGITCNCVAPGFMETEMVQALSTYETIKEQAVAAQPIKRVGKPDDIA FT DAVAFLASERAGFISGEVLHVTGGRYG" FT misc_feature 645204..645929 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 2.8e-89" FT misc_feature 645612..645698 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 646042..647247 FT /transl_table=11 FT /locus_tag="BB0614" FT /product="putative thiolase" FT /protein_id="CAE31114.1" FT /translation="MRRAAIVSPLRTPVGAFGGALKAVPVEELGAAVARAIVQRTGLDP FT ARIDDVVFAQSYASGETPCTGRWVALQAGFPIEVAGMQLDRRCGGGVQAVATAAMMVQT FT GAADVVMAGGVESMSNVEHYTTDMRWGKRAGSVTLHDRLDRGRERSQPESRFGRISGMI FT ETAETLAREYGISREQADLFAARSHKRAAAAQAAGHFDAEIVPISVAQRKGEPLLVGQD FT EGVRGETSAESLGRLRTIMKEGVVTAGNACQQNDAAAACLIVAEDRLEELGLEPMGWLV FT GWAAAGCDPARMGIGPVPAVSKVLARTGLGFDQMDLIELNEAFACQALACVKGWGSSMD FT ALEDRLNVNGSGISLGHPVGATGVRIMTTLLHEMQRRKARYGLETMCIGGGQGIAMIVE FT RA" FT misc_feature 646042..646842 FT /note="HMMPfam hit to PF00108, DE Thiolase, N-terminal FT domain, score 1.6e-75" FT misc_feature 646855..647241 FT /note="HMMPfam hit to PF02803, DE Thiolase, C-terminal FT domain, score 9.6e-59" FT CDS 647257..649206 FT /transl_table=11 FT /locus_tag="BB0615" FT /product="AMP-binding enzyme" FT /protein_id="CAE31115.1" FT /translation="MMHTNDSSHVWQPGQRELQDSGIAHLIRTLGAATYDDLMRVSVEE FT PERYWNTVMRECAIAWDEPPTGYVDLARGPQFPSWFPGGRLNWVNTIYAWARNPATAGQ FT TAVIGEREDGSVGSLTYQELETRVREFAAGLARHGARPGDRIGLLMENGVDATVSLLAI FT VHLGALVVPLFSGFGVDAIVARLSAAEARMVIASTGFQRRTKRVDVQGALRDAWRQLPL FT LENVVWKRADGESAQDQRDLDWQQIATAAQGQGQDPVSVTPDTPFMVIYTSGTTGKPKG FT VVHTHGSFPIKIAHDSLVHFDVHPGDVYCWPADMGWIAGTLVLGCALLRGATLVCYDGA FT PDYPDWSRMSRVVERHKVTHFGSAPTLIRGMASNETLALAGDRATVRVLITAGEGIAPE FT HFIWFQQRFGDGSAPLVNYTGGTEVSGALLSSVPIRPIPPSGFNTISPGVAVDVVDPDG FT HSVTGEVGELAVRAPFVGMTQSFWHDDARYLETYWQAIPGIWVHGDLALRTPEGYFFMM FT GRSDDTLKVAGKRLGPAEVEEVVLELHDVAEAAAIGVADAAKGQKLVVFVVPRPGVSVP FT DDALQAAVIGHVDKRLGRPFRPGRVHVVSQLPKTRSSKIMRRVIRSVYCGQPPGDLSSL FT DNPAALDEVRAAAA" FT misc_feature 647614..648909 FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 1.9e-101" FT misc_feature 648061..648096 FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 649220..650071 FT /transl_table=11 FT /locus_tag="BB0616" FT /product="IclR family regulatory protein" FT /protein_id="CAE31116.1" FT /translation="MSSGPPAARKPGVVQPALLNMSAWLRPEPGLTVVTPLVRALVLIS FT AFSPQERWLGNGQLAQRTGLPPSTVSRIAQSLVHLGYLLHDEAERKYRLAPAVLGLGYA FT AIAHSAIQGLAGERMAAFARQHKVHVCLAARDRLDLVVLECRRSLECPVALPLHVGMRV FT GIAQSPMGWSMLAALPELERCYLLDNVERRMARDWSRLRRRVWEGMAQVGETGYCTSIG FT EWDPELGALATPVLLEGSSPFVLACIGTSQTMTRARVARELGPRLLAMREALQTEFNVI FT GH" FT misc_feature 649379..649444 FT /note="Predicted helix-turn-helix motif with score FT 1621.000, SD 4.71 at aa 54-75, sequence FT LGNGQLAQRTGLPPSTVSRIAQ" FT misc_feature 649493..650050 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 8.6e-05" FT CDS 650122..651303 FT /transl_table=11 FT /locus_tag="BB0617" FT /product="CaiB/BaiF family protein" FT /protein_id="CAE31117.1" FT /translation="MKVLEGIKVLDFGRFIAGPYCAALLADYGADVIRIDRVEGGEDRY FT IVPVTEGGEGAMFLQLNRNKRSMTLDLDSPQGREIVRKLVAGADVVIANMPPRTLKSLG FT LDYATLSGVNPGIILVASNAFGDAEAVRDRVGFDGVGQALSGAVYMAGTPDQPQKAMVP FT VVDFATSFACALGTMLALYERKRSGKGQEVSASLLCTGLNMASGALIEEALLGLDRQAT FT LNRASGYAPSDIFKARDGWFITQVIGQAMFKRWTRLVERPELFEDARFADDRLRGEHGE FT VLSAIMSDWCGDKTLDEALAQLEKARIPAGRVNSPRQALEDETVRAANLIQWMDYPGAP FT GKVPIFSTPVSLSRTPPEIHRRAPLNGEHTEAILAELGVDARAIADLRQRRVI" FT misc_feature 650323..650889 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 2.8e-44" FT CDS complement(651327..652256) FT /transl_table=11 FT /locus_tag="BB0618" FT /product="LysR family regulatory protein" FT /protein_id="CAE31118.1" FT /translation="MDIKQLRAFVTVAETGNVTRASGLLNLVQPAVSRQLRLLEQDLGT FT ELFDRGRHGMRLTPNGKTMLEYARRILGEVARAKAEIQPTEGPVAGIVSIGLLASTSDL FT LATRIAAEVAQRYPQIRLRLTIGYAGHLREWLEAGDLDAALLYGKKDIPALHVKALLEE FT NLWVVAPPSARLTRTRAQSLERISRHPFILPAAPQGLRAVIEHAAAEAGVTLQIFAETN FT ALSVQKDLVTQGHGWSILPAASVAPDVESGRLSAAPLAGGGLKRTIVLGAASSRQATAP FT VRCVVGVLIDCVKATLDERRWPDARWLG" FT misc_feature complement(651384..652001) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 7.7e-40" FT misc_feature complement(652071..652250) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.8e-25" FT misc_feature complement(652116..652208) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(652146..652211) FT /note="Predicted helix-turn-helix motif with score FT 1021.000, SD 2.66 at aa 16-37, sequence FT GNVTRASGLLNLVQPAVSRQLR" FT CDS 652370..653536 FT /transl_table=11 FT /locus_tag="BB0619" FT /product="putative acyl-CoA dehydrogenase" FT /protein_id="CAE31119.1" FT /translation="MSALSAPDQYQEIRDAVRSLCKQFPPEYHRQVDEKRGYPEEFVNA FT LTKAGWLAALIPQEYDGPGLSMAEASVIMEEINRSGGNSGACHGQMYVMNTIVFSGTEE FT QKRKYLPRIASGELRVQSMGVTEPTTGSDTTKLKTTAVKKDGRWVINGQKVWISRVQHS FT DLLILLARTTPVEQVQKRSDGLSCFIVELDKAIGNGLTVRPILNMVNHETNELFFDNLE FT LPEDALLGAEGKGLKVIFEGLNAERTLIAAECIGDGYWFLEKARDYANERKVFGRPIGQ FT NQGIQFPLAECFIELEAANLMRWQACSKIDARQNAGVEANMAKYLAAKASWEAANACLQ FT THGGFGFACEYDVERKFRETRLYQVAPISTNMILGYVAEHVLQLPRSY" FT misc_feature 652385..652735 FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 1.6e-08" FT misc_feature 652739..653056 FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 8.1e-18" FT misc_feature 653066..653515 FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.5e-56" FT misc_feature 653387..653446 FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT CDS 653555..654310 FT /transl_table=11 FT /gene="etfB" FT /gene_synonym="etfS" FT /locus_tag="BB0620" FT /product="electron transfer flavoprotein beta-subunit" FT /protein_id="CAE31120.1" FT /translation="MKILVPVKRVVDYNVKVRVKSDNTGVDIANVKMSMNPFDEIAVEE FT AVRLKEKGAASEVIAVSCGVAQCQETLRTALAIGADRAILVETAAELQPLAVAKLLKAL FT VDREQPGLVILGKQAIDDDANQTGQMLAALADLPQATFASKVELAGDKVSVTREVDGGL FT ETLSLDTPAVITTDLRLNEPRYVTLPNIMKAKKKPLDTIKPEDLGVDVAPRLKTLKVSE FT PPQRAAGVKVPDVAALVEKLKNEAKVIQG" FT misc_feature 653555..654301 FT /note="HMMPfam hit to PF01012, DE Electron transfer FT flavoprotein beta subunit, score 5.1e-116" FT misc_feature 654017..654079 FT /note="PS01065 Electron transfer flavoprotein beta-subunit FT signature." FT CDS 654320..655258 FT /transl_table=11 FT /gene="etfA" FT /gene_synonym="etfL" FT /locus_tag="BB0621" FT /product="electron transfer flavoprotein alpha-subunit" FT /protein_id="CAE31121.1" FT /translation="MTVLVIAEHDHASIKPATLNTVTAALACGADVHVLVAGDNAAGAA FT QAAAQIAGVAKVVHADGASLKDGLAESLAAQVLAAQADGNYSHILFPATASGKNVAPRV FT AARLDVAQISDITRVVGADTFERPIYAGNAIATVQSADAVKVVTVRTTGFDAAAPTGGS FT AAVETAAAVPDGGKSRFVGREVTKSDRPELTAAKIIVSGGRALGSAEKFADVITPLADK FT LGAAIGASRAAVDAGYAANDLQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAI FT NKDAEAPIFAVADYGLEADLFQAVPELIGAL" FT misc_feature 654323..655147 FT /note="HMMPfam hit to PF00766, DE Electron transfer FT flavoprotein alpha subunit, score 1.3e-116" FT misc_feature 654830..654853 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 655085..655165 FT /note="PS00696 Electron transfer flavoprotein alpha-subunit FT signature." FT CDS 655322..656170 FT /transl_table=11 FT /locus_tag="BB0622" FT /product="conserved hypothetical protein" FT /protein_id="CAE31122.1" FT /translation="MHPDNPPSYDAWIGRTETSADQIGPTPIRLLRGTLDDEHASALPA FT HLPPLWHWLYFLPGERQSSIGPDGHPRRGGFLPPIALPRRMWAGGRLRFLRPLAVGAAV FT TRLSTIRHVQVKPGRSGQLVFVTVLHEIGDDAGVAIREEQDIVYRDAPAAGAPAPQPTP FT APADEQYSRVITPDPVLLMRFSALTFNGHRIHYDRPYAMQEEGYPGLVVHGPLIATLLM FT EELRRNHPGKTVRGFEFKAVSPLFDTAAFSVNGKVAGNTAQLWARGPQGQLAMRASAEI FT E" FT CDS complement(656241..657197) FT /transl_table=11 FT /locus_tag="BB0623" FT /product="LysR-family transcriptional regulator" FT /protein_id="CAE31123.1" FT /translation="MTLMSAPRPNKPARLHRVDPNLLVSLLAIFDTGNVSRAAEALGIT FT QPAVSQNLRKLREHFGDPLFVRGGNILQPTPLMLGIRPVIARLIQDLDTLSCPAGSFDP FT ANADREFSLCMSDSAEFAVIPFVAAEFGRRAPGCRIRGMRIHHSQLLAMLEKGEADVAL FT GSLAGAAPSLRQQRLTDHGMVCLVSGQGRWADTPPTLDDYAQGRHVAVRRVSDNLDPVS FT ERLRLNGIERNIMITVSSDFVAAATVVQTDALCTVARAVARQLAAFLPVRIQPLPFDVG FT TLATRMIWHERYQHDASHIWLRKLVRTAYRNWDAGGP" FT misc_feature complement(656265..656888) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.9e-18" FT misc_feature complement(656961..657140) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.8e-19" FT misc_feature complement(657006..657098) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(657036..657101) FT /note="Predicted helix-turn-helix motif with score FT 1693.000, SD 4.95 at aa 33-54, sequence FT GNVSRAAEALGITQPAVSQNLR" FT CDS 657308..658732 FT /transl_table=11 FT /locus_tag="BB0624" FT /product="conserved hypothetical protein" FT /protein_id="CAE31124.1" FT /translation="MSTIIEKLADFSVNTAFEDIPAHVVEESKRLILDSIGCAFAAVDH FT PKGRIGVEYSRSMAGNGGATIIGTPHQASALGAAMANGELINALDMDAVVPPGHVTPYV FT LPGALATAELANASSRDLIRAVAVSHEMSWRIGKAMDYLRDARNGQLDTPKVYGFSSTI FT FGATAAIAMLQGQSASTLAHALSIAGYISPVQSMMAFFHHAPSTTIKYQMAAALIQAAM FT MAAHMPVLGHRGNVQLLDDAENGYAKFIGTRRWDTDRIVSDLGAHWGFTTEQLYKPYPH FT CRILHGPLDCLIEIVERHDLRPEEIDGIHLFVEGFVQKPTWQTRDIQHVHDGQFSIAHG FT MAIAAHRLKPGRDWQDPKHVFSPSVLGLMEKVRYEVHPDYLQQLSAHASARPSRVEVEA FT RGQRFVAERLYPKGSPAPDPANLMSTDELIAKFHHNAEGVVPRDGAEAIVEAVMRLDDG FT RGVASWTPLLAGAPGA" FT misc_feature 657311..658693 FT /note="HMMPfam hit to PF03972, DE MmgE/PrpD family, score FT 1.3e-14" FT CDS 658958..659929 FT /transl_table=11 FT /locus_tag="BB0625" FT /product="putative exported protein" FT /protein_id="CAE31125.1" FT /translation="MFTRRHFLKTWAALPVALQSQHVLARQLSDKPIRLLVAASSGTTV FT DTVARFLAPPLAGLVGAPVVVENRPGAGGALGSAAVAKAPADGHTLLMTGITHFSALYS FT GEAAATYDPVRDFKGVARACSAALALVVPANSPYRTFGDLLAAMKANPEGIDYGSGGVG FT STSHLCTAIMNDLTGTRARHIPYKGNTQAVTDTAAGIVAFTCQGAAGVLPLIQAGRLRA FT LLVTSPRRWDALPDVPTGVESGIPGFEVSSWMAAFAPAQTPDPIVVQLSDAIARIVRSS FT EFKDFCANQSMYVDLMEYREFQASIPAEDKRWQRVAELIKRS" FT misc_feature 658958..659032 FT /note="Signal peptide predicted for BB0625 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.987) with cleavage site FT probability 0.986 between residues 25 and 26" FT misc_feature 659099..659923 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.2e-83" FT CDS 659992..660981 FT /transl_table=11 FT /locus_tag="BB0626" FT /product="putative exported protein" FT /protein_id="CAE31126.1" FT /translation="MNRNLRSRALVRCALGAMLALLPPWAAAAQDYPDQARPVRIIVPS FT GAGSIVDLLARAQAKAMSEVAGINVVVENKPGAETIIGVQALMAAPPDGYTMLVTSSSS FT QSINPVMLPNLPYNPLEDYIPLEAISTSPLYMNLGASTRFGSAGDFIAAARASPGKYTC FT ASATTATRLACAQLEGTTGIEMLNVPYRTSASALTAVASGEADVFFIDIGSARAFWQAG FT KMRPVAVTSSARAKALPQVPTLREQGAANYEFVAWFAAYFPARTPPQTVAKMREILQAA FT YATPGFVEALATYGHEPLQLAGADLLELNRKEIAKWSTLVKEGGIQVQ" FT misc_feature 659992..660078 FT /note="Signal peptide predicted for BB0626 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.892 between residues 29 and 30" FT misc_feature 660151..660969 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 5.2e-57" FT CDS 661132..661743 FT /transl_table=11 FT /locus_tag="BB0627" FT /product="conserved hypothetical protein" FT /protein_id="CAE31127.1" FT /translation="MARRQTSSNGAGETRENLLRLAARIFSAQGYSGTTMRSIAQQAGI FT ETASIYYHFPSKEDLVDEVMEIGATAIIQHMTERIEALGDGATAEERFRAAVLGQMAGM FT VKHGEYTLASSSLIEQLPEKVRERQSKRRESYQKLWAGLLEDLRAEGRLRSDVDLHLAR FT MFILGSVQSIRYWFNPRKGSLEKVAAQLCDLFFEGVGQRG" FT misc_feature 661183..661323 FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 2e-18" FT misc_feature 661219..661311 FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT misc_feature 661231..661296 FT /note="Predicted helix-turn-helix motif with score FT 1561.000, SD 4.50 at aa 34-55, sequence FT TTMRSIAQQAGIETASIYYHFP" FT CDS complement(661796..663217) FT /transl_table=11 FT /locus_tag="BB0628" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0030" FT /protein_id="CAE31128.1" FT /translation="MNATPSPSNPPDNCPPLEQAVVRFIQDLKYEHIDAAALAGVNRLM FT RDQLALQVGISAMPWSRQLLDYALTHQRPGASRVSASTLKMSAADAAFVNGSYGHGFEY FT DDAHGPSYSHPGSCVIPAALAIGEELGSSLQDVITAMVAGYEVYTRIGLLAAPDLLRRG FT YHPHCTLSNFGAAAVAAKLRGFDAETTLHALAIALSHTSGTTEYSSTGGSIKRIHAGLG FT TRNGMMAADMARAGITGPRAFLSGNKGFFKTFLQRPAGEAPQQRFAPGEPFQVATVWLK FT AYCACYCTHAYIDALRPYAERRGEIADIHLKITPHFNVVVGTANACAYAPTNIEHVQFS FT LPIQAALAVQGLGNGYRIHRDYLDGRVDMAPVIAMARGIRITEDPGLETRHPGKFVADV FT TVTFRDGSAEHVFVADPIGTDTNPMPEHEQDAKFMELTADALGQARARALLAALRKMDP FT AMKAADLMALCEPAP" FT misc_feature complement(661829..663175) FT /note="HMMPfam hit to PF03972, DE MmgE/PrpD family, score FT 2.1e-42" FT CDS complement(663259..664116) FT /transl_table=11 FT /locus_tag="BB0629" FT /product="putative enoyl-CoA hydratase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0029" FT /protein_id="CAE31129.1" FT /translation="MRRGAINTHQRYGAVSNMRYEDFEFLLCEPQDDGVMLVTLNRPDA FT MNATNDRMHWELTRIWGVVNDDPGVKAVVVTGAGERAFSAGGDLSVVEAMSNSHETTMR FT VMKEASDIVYNMLACDKPIISAINGTAVGAGLAVALLADVSVMAEDAKLTDGHARLGVS FT AGDHAAIIWPILCGMSKAKYYLMTADFVDGKEAERIGLVTFCAPRAEVLPRSLAIAAKL FT ARGSQTAIRATKKSLNNWMRTAGPAFDNSLALEMLCFLGPDVKEGLAALRDKRAPDFPS FT ARLP" FT misc_feature complement(663496..664011) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 7.4e-32" FT misc_feature complement(663685..663747) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 664279..665040 FT /transl_table=11 FT /locus_tag="BB0630" FT /product="nitroreductase family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3845" FT /protein_id="CAE31130.1" FT /translation="MNAETPQNLMVASLQAPPVRTVVADPQSVHAAIESRFCCREFLAD FT PVERETLERILRVASWAPSGSNNQPWKVYVVQGASRAALSQKVRAAQDALSQDPTLADN FT YREPYQYYPVEWVSPYIERRRACGFGLYGVLNIARGDRVRMNEQLLRNFDFFGAPVGIF FT FTNDEILAEGALVDTAMFVQNVMLAARAEGLHTCVQAAWNRFSSVVLPHIGAQGERLVC FT ALALGHADVDAPVNTFRPDRADPASFTAWLD" FT misc_feature 664360..664920 FT /note="HMMPfam hit to PF00881, DE Nitroreductase family, FT score 0.00057" FT CDS complement(665120..665806) FT /transl_table=11 FT /locus_tag="BB0631" FT /product="TetR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3846" FT /protein_id="CAE31131.1" FT /translation="MPMPDTTSSTEHIESQASEKGRSRGQRGEGKASPETRDRLLRAAA FT HVFRHKGYVAATLAEIGQLADLRPATILYHFASKEALLEEVMTVGLGAPQQEVQRRLAS FT APRDATAADRLRIAIIGHLSALLMHNDFTAAGVINFHLAPPALRKRHHEKRSAYGDVWR FT ELLRQAKDEGYLAGDVDLTVLRLFMIGGLNWSHEWYDPKGGRSIEAIGSDIARIVLGQT FT DTPLPA" FT misc_feature complement(665549..665689) FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 8.5e-13" FT misc_feature complement(665576..665641) FT /note="Predicted helix-turn-helix motif with score FT 1063.000, SD 2.81 at aa 56-77, sequence FT ATLAEIGQLADLRPATILYHFA" FT CDS 666103..666987 FT /transl_table=11 FT /locus_tag="BB0632" FT /product="putative hydroxymethylglutaryl-CoA lyase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3847" FT /protein_id="CAE31132.1" FT /translation="MDALTATGLKKIQVASFVNPRMVPAMADAAELFGAIQKKSGVRHT FT ALWLNAKGIEKAAATAGVDLDGKMMLYASEAFSWSNNGCSAKDQQQRQLEWLAIYDRLN FT LPLEAVYVATAFGCQMQGEVPLQAVLDIVDFVRDLCAEQSRPLPSIFLGDTVGWGNPEE FT IKRRVNAVRERAPGMRVGLHLHDTRGMGAANFYAALQEGVDLFDSSIGGLGGCPFCNHT FT NMQAAGNICTEDMVQLCHELGIETGIDLDRLIGASRLAEEIIGRTLAGKVMHSDSLDAQ FT RAALRQAQAGEPA" FT misc_feature 666106..666912 FT /note="HMMPfam hit to PF00682, DE HMGL-like, score 3.4e-18" FT CDS 666984..667763 FT /transl_table=11 FT /locus_tag="BB0633" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3848" FT /protein_id="CAE31133.1" FT /translation="MSDALLFSVDDGIATLTINRPAQRNAINIEVNSRLYEAWETIDSR FT PDIRVAILTSADCGTFCAGMDLKEAARVREETGEDVVRSFKDPFQARMRRVKVPIVAAM FT TGHLMAGGMMLSLNCDLRVGLAGTKAGITESKVGRGSPWGVPLVWMLPQPVLMELMLTG FT NLMPIERLRDLGFVNDLGETPDAVRAKALALARAIRDNAPLSVACAKQSILAAMSVGCD FT AGLEMAWRIHRPAYESEDAEEGPRAFAEGRKPVWLGR" FT misc_feature 667023..667529 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 3e-16" FT misc_feature 667284..667346 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 667821..669083 FT /transl_table=11 FT /locus_tag="BB0634" FT /product="CAIB/BAIF family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3849" FT /protein_id="CAE31134.1" FT /translation="MFTHLVDFMSISSHRLLEGIRVLDMTVALAGPYASMLLGGLGAEV FT IRVEAPGGSDLGRSNPPFVGPGGVNFGQQGSDDVSLTLLNRARNKKSITLNVKDPEGRA FT LFARLLRESDVFIENLSEGASERLGVDYARVREINDRIIYASIKAFGEPSKYQNLKGMD FT ILVQALSGLMAVTGEASGPPMRCGVPVADLLAPLYMVNGILAALIYRGRTGKGQKIQVS FT MLDCLSSWVAEEHFDVLAQAGFRMRTGNNHERLVPFGTYECVDGHIAIAAVHPDWFASL FT LDAMGRADLQRDPRFADRGTRMRHAADLAALVSEWTRDKTVAFVEQALVQERGVPAARV FT RTPLEMLDDPDLHRSGAITDLQTPDGGTVRGMGLPIGFSECHAQFDVPAQALGQANASV FT YADILGLSDAEIRRLEEKGVI" FT misc_feature 668097..668666 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 1.3e-57" FT CDS 669182..670153 FT /transl_table=11 FT /locus_tag="BB0635" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3850" FT /protein_id="CAE31135.1" FT /translation="MHRKVVALIAASLACLAGAASQAQTKPYPSEPFTLIVPFGAGGGT FT DLLARHIGKAITEKTGLAAIVENKAGANGIIGAQHAKKATANGYNILLTTSTTHGANPS FT LYKSLPYDPVADFDPIGLVGVGGVVMVVKADSRINNVQDFIAAAKASPRPMTFGSGNSS FT SQAGGELLKSYVGVDLMNVPYKSVPAALTDLVGGQVDVVFADSIAAQPMITGGQVKPIG FT VSTRTRIPGLENVPTIAEQGVQGYEFLGWIAAYTPKGVPEDRRKYLNAMFNDIVKEQAV FT ADFLARNGWIVQPGSMAEMDNFQKSEIAKWRKIVETTGMTVQ" FT misc_feature 669182..669250 FT /note="Signal peptide predicted for BB0635 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.861 between residues 23 and 24" FT misc_feature 669194..669226 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 669323..670141 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 7.2e-64" FT CDS 670162..671334 FT /transl_table=11 FT /locus_tag="BB0636" FT /product="iron-containing alcohol dehydrogenase" FT /protein_id="CAE31136.1" FT /translation="MPSYARYHTPEMRAFEGEGCFEALPAELDRLGCASAVIVCGRSMA FT RDERLLALIRRPLGSRLDGICADVRPHSPLSAVQAVARYLRSSGTQCVIAVGGGSAIVT FT ARAASILRAEDGDVASLCTQWLADGSMRSPRLVADKMPQIVVPTTPTTAIPKAGSAMLD FT EASGARMALFDPKTRARSVFLHPAFTASAPLALLHSAAFNSLALAVEGLLSRTAHPLSD FT AALMHAAGGLYRSLARGGGLASPAERRDLIWYAIQAGQGSDHTGAGMCIPIGHAISSMF FT NIDNGIANAIVLPHVLRFNAPSARRGIELLASALRVDGGGTDAGVAAVARALTQLAAAT FT AYPSRLRDAGVARERLPDIAAVAMRDWYLRNNPVRIEHPGQIEAVLRDAW" FT misc_feature 670189..671307 FT /note="HMMPfam hit to PF00465, DE Iron-containing alcohol FT dehydrogenase, score 1.5e-12" FT CDS 671357..672115 FT /transl_table=11 FT /locus_tag="BB0637" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /protein_id="CAE31137.1" FT /translation="MMDFDNLDVSVEDGICQVTLNRPEKFNAMSLALRKQMTACLQRIA FT GDTAIRVVVLTGAGRAFCAGGDISEFECSSEELNDLITRVSHQWFRAFANLPQPVIAAV FT NGPAAGAGCSLALGSDLIYASESAYFTQSFSAIGLAPDQGSAYHLPRRVGLARAKEMCF FT FADRVSAPQALEWGMINGVFPADALMDAVRGKARALSLKSPQALQMIKRMLNRSFESTL FT EATLDMEAAAQSFLFSTEGTRQAIGAFLKK" FT misc_feature 671402..671908 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 7.5e-50" FT misc_feature 671657..671719 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(672156..673637) FT /transl_table=11 FT /locus_tag="BB0638" FT /product="putative amidase" FT /protein_id="CAE31138.1" FT /translation="MHASHIIDYLKLDAVELSEHIARGDMTAEHAMRCALELAGRYDEP FT YGVLCHAHPEAALESARQGRPGTRFAGVPFLLKDSGLPSTRLPSSVGSRLFSDTRYAQD FT STLASRLEQAGLIPFARTRVSELCMAPTSEAVRYGGPTRNPWAPERSAGGSSGGSAVAV FT ALGIVPMAHGSDGGGSVRIPAACCGVFGFKPSRGLLPVGPLKGESLGGMATDGVLSQTV FT RDSAALLDAVSGYEPGSPYASPVCAKPLSASVVPAIGRARLRVGVWREAWNGVPIAQPC FT LQAVQQAADLCRELGHEVVDLPLPNFNYDQFVDAHATMLATTIARLVDARLRQTGQSLA FT DGDLEPAIADGYTLGKRIDAITYAGAVDCFHGVGRAIERAMASCDLILSPALTTLPVKL FT GTLTPVGGFLDFRRRVSEYTTFLAIINASGQPAASVPLHWTADGLPVAVQLIGHFGQDD FT LVMRLAAEFERAAPWHGRLARFRGDAYAQALERAA" FT misc_feature complement(672255..673550) FT /note="HMMPfam hit to PF01425, DE Amidase, score 7e-76" FT misc_feature complement(673086..673181) FT /note="PS00571 Amidases signature." FT CDS complement(673641..674474) FT /transl_table=11 FT /locus_tag="BB0639" FT /product="conserved hypothetical protein" FT /protein_id="CAE31139.1" FT /translation="MAPPWLTIHEGGSPLVCSIPHAGSWIPDELRHDFVSDWDAVRDCD FT WWVDRLYDFARDLDATLVCTNVSRSVIDVNRPADGRSLYPGQATTGLCPTTNFDGAPLY FT RVGREPDDAAIARRKAQYHQPFHAALASQIARLRERHCAVVLYDCHAIRSRIPRLFDGQ FT LPALNVGTNDGASCSPELQAIVADACRASGRDYVVNGRFKGGAITRQYGQPDAGVHAIQ FT MELACRAYMHEPADAPSEENWPSPWSADASAALRATLQTLLQALRDWAARQKPNR" FT CDS complement(674492..674935) FT /transl_table=11 FT /locus_tag="BB0640" FT /product="hypothetical protein" FT /protein_id="CAE31140.1" FT /translation="MAHDPIEVWKKMPMKVWPERYWLIDVPAEHGEAVARALAHSQSRY FT VAVIRDQTGFSLVVDEQTWDGHGSAQAERQKFGPLKVISTDGPLPFDVTGFIKAALEPV FT NTLGMKAAPQCGAAADHFFCAEAEVDQVAAVFERFTAGFGAAR" FT CDS complement(674975..676432) FT /transl_table=11 FT /locus_tag="BB0641" FT /product="putative aldehyde dehydrogenase" FT /protein_id="CAE31141.1" FT /translation="MTSSPDIGACAYIGGRWAQTPAARTFRTALPHDTRQSGREFGCAT FT PADAEAAVARATAAAAPWAAVPALQRAEPLRKAAALLLERLDELTRLLALEAGKPLQEA FT RGEVSAAAGFLHAYAGWPAWGGQGAVKRNGALRIVQEKFPRGVAAIITPWNYPLSNPCQ FT KIGAALIGGNPVIWRPSVSTPAVSLALIEIMHQAGFPDGVFNALIEDGDAVSRALVASE FT AVAAVSFTGSTRVGLQVAAAAAGRGAAVQCEMGGKNAAVVMPDADLDLAAERIAFGAFG FT FAGQKCTAVSRVLVHRHIADAFLERLLDIVRDLRPGLPHQEESCLAPLISARQRDLLVD FT AIAQARERGARLIEGGAPIEQAPYAHGNYLSPALIQVHDLDDPLWTDEYFGPVLALRVC FT DDLDQAIAEVNATRYGLGAALFSHDARAIGRFTDQVQAGVVKINDVPPGLYPHVSTGGW FT KASGLGPNELSEDGVDFFLHKKSVYLA" FT misc_feature complement(674981..676387) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 3.8e-130" FT misc_feature complement(675560..675595) FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS complement(676440..677048) FT /transl_table=11 FT /locus_tag="BB0642" FT /product="NADPH-dependent FMN reductase" FT /protein_id="CAE31142.1" FT /translation="MIDARIVAISASPSPTSKTALFVDHVLAQLGPRGQQARHIRVRDI FT DPRALLAGDFGNAALREAAALIEQADAVIVATPVFKASYSGLLKAFLDVLPQFALAGKS FT VLPLATGGSVAHVLSVDYALRPVLQSMGARHVIQGFFLAEGDVLAAPAPFRIHETADEK FT LAEVLHHFRCVLDAPVADTLLGHPRPNRSPGTAAQFGCA" FT misc_feature complement(676542..677039) FT /note="HMMPfam hit to PF03358, DE NADPH-dependent FMN FT reductase, score 6.8e-11" FT CDS complement(677056..677841) FT /transl_table=11 FT /locus_tag="BB0643" FT /product="putative transport system permease protein" FT /protein_id="CAE31143.1" FT /translation="MANRFSNVLLPLVTLVLILGLWDISVRWLGMPAYLLPPPLDVFRA FT LWHGYSTGLLWPHLLTTTAETIGGFVLGCSVAVVVGGLVAEFRLLERMVYPYVVALQSM FT PKVALAPLLIVWFGFGLMSKVVLVALICFFPMFVNVVTGLRGARQELIDLYTAFSASRF FT QIFRDIKLPSALPSIFAGLQIALVLSLLGAVVGEFVASQKGLGSLIQAASLNFDLPIMF FT ACILTLAFMGAMATLVVNWAQRRLLFWHETTAGQDRKAR" FT misc_feature complement(join(677119..677187,677245..677313, FT 677401..677469,677482..677550,677587..677655, FT 677755..677823)) FT /note="6 probable transmembrane helices predicted for FT BB0643 by TMHMM2.0 at aa 7-29, 63-85, 98-120, 125-147, FT 177-199 and 219-241" FT misc_feature complement(677200..677415) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 0.004" FT CDS complement(677857..678672) FT /transl_table=11 FT /locus_tag="BB0644" FT /product="ABC transporter ATP-binding protein" FT /protein_id="CAE31144.1" FT /translation="MTEQSGGPSVPQLQIDALSVTYETRRGSLLAVDNMTMSVGRKEFV FT AVLGPSGCGKSTLLKIVSGLLRPSGGQALLDGSRIEGPRRDVGIVFQQPVLLPWKTVVE FT NVLVPIRALRLNENEHRGIALDLLKLVGLEKFADHYPRELSGGMQQRVGIARGLVHNPR FT LLLMDEPFAALDAMTREQMSEELQSIWMETDKAVLFITHSIHEAVFLADRVIVLSERPA FT KVIDDVVIDLPRPRQSNIASNPRFGELCAHLKSHFTTAANRTESPVANH" FT misc_feature complement(678013..678549) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 5.8e-59" FT misc_feature complement(678199..678243) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(678505..678528) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(678700..679776) FT /transl_table=11 FT /locus_tag="BB0645" FT /product="putative exported protein" FT /protein_id="CAE31145.1" FT /translation="MKASKLFIAAGVAAALAGAAPAAASAADKFVFAWPSAINSGVAPL FT SYAKKLGYWQDERIDLTVQVLTGSGVIVPQLLAGNIQGAYSSLETLVVARQPGKPDYPI FT LFPYNYLRNSIWEFAVLKDSPIQSFADMKDATIGVLGLTSGNIFMSRAILASQGVPAGD FT VKFLAVGTGAAAFDALKTRQVQVLNLFDTAHVRVEQNGIPIRRVPLPAAYQGLSSHGIS FT VTRKLYDQNPDLIARFGRALTKGTVACQANLESCIRAYWDDYPAMKPRPDQEQATLERE FT KEVLKVRMANLNYFRDGQPRQYGAFSQEDWTMLIEALKLGNEVTKTDIPLDTLYSNKLV FT GEYNKFDADAVARQAREH" FT misc_feature complement(679699..679776) FT /note="Signal peptide predicted for BB0645 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.621 between residues 26 and 27" FT CDS complement(679808..680914) FT /transl_table=11 FT /locus_tag="BB0646" FT /product="luciferase-like monooxygenase" FT /protein_id="CAE31146.1" FT /translation="MKVILFHEAICPAGTTWAQRMKEVVDEAVHAEACGFDGYAMSEQH FT FASGEAITSAPEIVLPYVAARTTKMRLRIASVNLLPYNHPIRIVEQMATLDLLSGGRAE FT LGGARSNNPYTLDAFGVDAKLTREYRDEFLAIIGKGFTQEKLEHQSPYYNIPPRRMSPW FT PVGRRPVPVHLSATSLESHEEAGRMGVGAMSGLSILGWEYAQACIDAYRKGAENAQCVA FT GSITKRQALFSVGVNCHADRATALKQTEENTLRFVEVIMDWMTKLAKRSEGYEYFAQIE FT RIRANMDNLQYLIDNAPYIMAGTPDDLIERCRRLHEMGIDDLIWRIDGMGHETNKKALE FT LIGKEVLPVVQSWPEHEYSTPSSTWNQS" FT misc_feature complement(679865..680914) FT /note="HMMPfam hit to PF00296, DE Luciferase-like FT monooxygenase, score 5.3e-15" FT CDS 681160..681987 FT /transl_table=11 FT /locus_tag="BB0647" FT /product="IclR family transcriptional regulator" FT /protein_id="CAE31147.1" FT /translation="MAADGSKTRKEEGGAESGGSQVMTKGLRVLSHVAHCGGEIGVREL FT ARDVGLPVAVVHRLVSSLSELNYLEKNPESGKYRIGYEAFEVGRTYLRSARIETCAPPV FT LRNVVDAHRLNAFLGVMRDLSVIYLITIQDYGHYDIRIAPGSEVPLATTAMGKVLLADL FT ADDEILEKLGQYAEKRFSAFDISRRDTVIEEIVQIRQQGYAVSEDGSFRGTVSVAAPVY FT NFTGRVIAAVSVGRPTQISSGPTVESMIECAVEAAGRISACLGAQIANQRRGG" FT misc_feature 681391..681948 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 8.2e-23" FT CDS 682015..682719 FT /transl_table=11 FT /locus_tag="BB0648" FT /product="probable regulator" FT /protein_id="CAE31148.1" FT /translation="MARRPARLHAGRAVAIDVNYSSWDTSRKFGAGWLLRTDLGRVRAF FT AEGQALYRQGDVHDSFFLVRSGFLHTVVHGANGGVLLLEIFGPDAIFGEASAFVDEPRY FT VTARAVTPAVVTEYRVSELLPVLAGEPGLAVSLIQLLGIKHRILIGKLLRATSASPRER FT LEGLLGRIAAGSEQTRALRLTHEQLARMTGLSRVTVTRALKAMAEEGLVDTRGKGVEIR FT DAERLRARLGPF" FT misc_feature 682129..682410 FT /note="HMMPfam hit to PF00027, DE Cyclic nucleotide-binding FT domain, score 2.8e-15" FT misc_feature 682555..682650 FT /note="HMMPfam hit to PF00325, DE Bacterial regulatory FT proteins, crp family, score 3.7e-06" FT misc_feature 682561..682626 FT /note="Predicted helix-turn-helix motif with score FT 2079.000, SD 6.27 at aa 183-204, sequence FT LTHEQLARMTGLSRVTVTRALK" FT CDS 682816..683565 FT /transl_table=11 FT /locus_tag="BB0649" FT /product="probable short chain dehydrogenase" FT /protein_id="CAE31149.1" FT /translation="MLLDNVIALVTGAAQGNGAAIARGLAAQGAAVAVCDIDLAGARRT FT AEALRAEGARAAAYELDVRDAARCAAVARQVGEDLGALGVLVNNAGVRPRHAFDGDERD FT ALWRQAMDVNVDGVRNMTLACLEGLAATRGAVVNITSIAASRASAQSIAYSTSKAAAQM FT LTKVLALELAPCGIRVNAVAPGVIETAMTQSSRDDPQRRGALMARIPMRRFGSPQDLVG FT PVTFLASPMSAYVTGAVLAVDGGFLAV" FT misc_feature 682825..683553 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 1.9e-75" FT misc_feature 683236..683322 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 683633..684610 FT /transl_table=11 FT /locus_tag="BB0650" FT /product="putative exported protein" FT /protein_id="CAE31150.1" FT /translation="MKSLFRSLSAATLALAVVAPQALAQDAYPTRPIRIVVPYPAGSAL FT ESVARTVSQTYNDNLGQPAVIMNKPGGSGIIGTQEVARAQPDGYTLLLGTNQTHGANSA FT LYPNLPYDALGDFTPIAGLARMQHVLVVRKNLGVDSVRGLIELASKPGANLNVGSSGNG FT SASHLVAEMFMRSADVKMAHIPYKGSGEVAQGLLGGFVDVSFATLPSVLPFIKDGSIVA FT LAVASKDRAPQLDSLPTLAQEGVRDVEADAWTALFAPAGTPPAVLAKVSAVTIDAFKDP FT GVVEKIAATGFVPEVSDGAAFKAFLAQDMQRWADVIKAANVKLD" FT misc_feature 683633..683704 FT /note="Signal peptide predicted for BB0650 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT misc_feature 683774..684598 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.1e-83" FT CDS complement(684640..686124) FT /transl_table=11 FT /locus_tag="BB0651" FT /product="aldehyde dehydrogenase" FT /EC_number="1.2.1.3" FT /note="Similar to Bacillus stearothermophilus aldehyde FT dehydrogenase AldH SWALL:Q8RKJ5 (EMBL:AJ458323) (494 aa) FT fasta scores: E(): 1.8e-65, 39.28% id in 476 aa, and to FT Bacillus halodurans NADP-dependent aldehyde dehydrogenase FT DhaS or bh0539 SWALL:Q9KFE2 (EMBL:AP001508) (498 aa) fasta FT scores: E(): 6.6e-66, 38.86% id in 494 aa" FT /protein_id="CAE31151.1" FT /translation="MTIGARLQHVIDGGPWPSIHCNGRVGSLIGGDIVPGNGAMIEVLD FT ASTGEPLFRYLDGSDGLVRRAAESAAAAQVRWAVMPADGRAAVLLAVSAAIRANLARLA FT ELEAVTAARPIRDCRAQVDRVADMFQYYAGWCDKFYGDVIPVPNQYLNYTMREPIGVLL FT HIVPWNSPLFMAAWHLAPSLATGNAVLLKPSELTPLSAIALVRIAESAGLPTGLVAVLA FT GLGHTMGNAAIEHPLVRKIGFVGSPETGAKVAGAAARVVKPCVLELGGKSANIVFPDAD FT LDQLCEATVKSMFIGAGQTCVAPSRLIVHRSLEQQVVERLLDAASTLEMGLPELDSTAI FT GPIHNRRQFDHVNRMIEQGRRDGARCRQAGNAVPQRGLYVPPTIFTGVARDGALARQEV FT FGPVMACLPFDTEQEAIDLANDTEFGLAGAVWTHDVKRAHRVAAAINAGTVWINTYKST FT DIRSPFGGIGLSGYGRSSGHEALQEYTRLKSIWVAT" FT misc_feature complement(684646..686025) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 9e-159" FT misc_feature complement(685210..685245) FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT misc_feature complement(685306..685329) FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT CDS complement(686130..687137) FT /transl_table=11 FT /locus_tag="BB0652" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 2.9e-46, 43.16% id in 322 aa, and to FT Agrobacterium tumefaciens hypothetical protein Atu4727 or FT Agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta FT scores: E(): 1.7e-42, 41.17% id in 323 aa" FT /protein_id="CAE31152.1" FT /translation="MFHTVLRTLRPTKALPRTAMALAACLLVPLAAPAQAAWPERPITF FT IVPTAAGGSPDVVSRLLGQQLGVQLGQSVVIENKPGASGSIGAMAIARAKPDGYTIGYA FT PTTMLAINQFLYKKLPYDVEQDFDYVTEFIKTYNFLLVPAGNPANSVSELVAYLKKNPD FT GAFFASSGNGTTGHLSAEMFKQRTGVEMTHVPFTGSAGGLSELIAGRVDVMFDNTTSSA FT PLVQAGKLKAIAVTSPQRLPEFPDTPTMIESGVPDFDVSGWGGIIVPKGTPDDVIERLN FT REINIALQAPLVQDGFKKIGAATVGGSSEDMKAHTAHDAAMWGAVIRNANITME" FT misc_feature complement(686142..686966) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 6.4e-113" FT misc_feature complement(687030..687137) FT /note="Signal peptide predicted for BB0652 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.975 between residues 36 and 37" FT CDS complement(687227..688513) FT /transl_table=11 FT /locus_tag="BB0653" FT /product="putative 3-hydroxyisobutyrate dehydrogenase" FT /EC_number="1.1.1.31" FT /note="Similar to Homo sapiens 3-hydroxyisobutyrate FT dehydrogenase, mitochondrial precursor HibadH FT SWALL:D3HI_HUMAN (SWALL:P31937) (336 aa) fasta scores: E(): FT 1.1e-26, 36.03% id in 308 aa, and to Yersinia pestis FT putative 2-hydroxy-3-oxopropionate reductase Ypo3648 FT SWALL:Q8ZAY4 (EMBL:AJ414158) (296 aa) fasta scores: E(): FT 6e-31, 38.96% id in 290 aa" FT /protein_id="CAE31153.1" FT /translation="MTNDIYDKGLAIRKEVVGVDSVERSLRDATEYTAPFQALATEYCW FT GRVWGRDELDRRTRSIANIAMMIALNRAPELRIHIKGALTNGVPRKEIAEVILQSAVYC FT GIPAAGDAFRQMQSVFDEADAAAACAPASPAARKSIAVIGLGAMGYPMAAQLVRAGHDV FT RPYDANPAVLARFAEEFNTGVAPIASCVAGADFVVTVLPDSTVVTRVLDGDNGSGGVAA FT RIKPGATLIDMTSGDPATTRALAARLGEAGVRMIDAPVSGGFVKARTGELAIMVGGEAD FT TVAAAMDILQAMGTSIAHVGPIGAGHTVKALNNYISAIGWLAVIEAIHTGKRFGLDVAT FT MNRIFNQSSGRNSSTANKVEQAVLSGTYHTGFSLALMAKDVGIAVGLARQMGVDAEVGT FT LAHRIIQTAFDQSAEKDLDNSRLFDILYS" FT misc_feature complement(687476..687541) FT /note="Predicted helix-turn-helix motif with score 973.000, FT SD 2.50 at aa 325-346, sequence IEAIHTGKRFGLDVATMNRIFN" FT misc_feature complement(687608..688105) FT /note="HMMPfam hit to PF03446, DE NAD binding domain of FT 6-phosphogluconate dehydrogenase, score 0.013" FT misc_feature complement(688055..688090) FT /note="PS00895 3-hydroxyisobutyrate dehydrogenase FT signature." FT misc_feature complement(688160..688450) FT /note="HMMPfam hit to PF02627, DE Carboxymuconolactone FT decarboxylase, score 9.5e-21" FT CDS complement(688637..689557) FT /transl_table=11 FT /locus_tag="BB0654" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa3778 SWALL:Q9HXL7 FT (EMBL:AE004796) (311 aa) fasta scores: E(): 1e-31, 35.19% FT id in 304 aa, and to Ralstonia solanacearum probable FT transcriptional regulator transcription regulator protein FT Rsp1571 or Rs02127 SWALL:Q8XPR7 (EMBL:AL646085) (324 aa) FT fasta scores: E(): 6.2e-25, 30.71% id in 280 aa" FT /protein_id="CAE31154.1" FT /translation="MNEELNLHRLFYLYEAVSAGSVRAAADKLNVNPSVVSRQIALLEK FT DVAATLIERSSKGVQATEIGALLMDFYRSHRSMSDDLAEKLRETRGMLRGHVSISLGAG FT FVSDLMGPPIQAFRARYPHITLNIETAGTNEVMRRVCEDDAHIGLVYNPTPESRVLSRA FT HAVQPLCAIVRAGHPLQRLGRPLKLGDVADFSIAMKPISFGTMQLLDMAARVEHVALNV FT SLTTNSSSVMYHYLRSQEAITFAPAFSIAQELIAGELVALPVDHPVLSSAEAHLVTRMG FT RSLPLSAQRLAAHLAGAMTAFQATA" FT misc_feature complement(688658..689290) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 4.5e-33" FT misc_feature complement(689360..689539) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.5e-11" FT misc_feature complement(689405..689497) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(689435..689500) FT /note="Predicted helix-turn-helix motif with score FT 1781.000, SD 5.25 at aa 20-41, sequence FT GSVRAAADKLNVNPSVVSRQIA" FT CDS complement(689827..690612) FT /transl_table=11 FT /locus_tag="BB0655" FT /product="putative transcriptional regulator" FT /protein_id="CAE31155.1" FT /translation="MEDNGTTRAGGGDTVQSVRRALEILRILSYSSSSNGMRFSDLQAQ FT SGLSKGTLHRFLKTLSAEGFVEQAAGSRVYYLGLEFLSMGERASNRLDIQAVTRPALER FT LAQSTGDTVMLTIRSGLDAVCIDRKEGSFPVKVLTQNIGTRRPLGVGSGSLALLAAFGD FT GEVENVLRRIQPRLQPYPSLDVDKLRAQVADTRQRGYALNPGYLLKGMYGIGVAIYLAR FT QPVAALSIAAHYGRMGPDRRKTIAAALKREADRVTEELG" FT misc_feature complement(689836..690390) FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 5.7e-25" FT misc_feature complement(690439..690504) FT /note="Predicted helix-turn-helix motif with score FT 1336.000, SD 3.74 at aa 37-58, sequence FT MRFSDLQAQSGLSKGTLHRFLK" FT CDS 690800..691990 FT /transl_table=11 FT /locus_tag="BB0656" FT /product="probable acyl-CoA dehydrogenase" FT /protein_id="CAE31156.1" FT /translation="MIDIAKSYQCSPALWRDRVDPAFLRELRRVVADTVLPEAEAIDRQ FT DVYPVQIIKAMARRGYTSLTLPRQWGGGAAPYGHCAAVFEEASYGSAAVGISLITILQA FT QTLINQFGAESLKAAVLPEFAQGLITAYALTEANHGSDIRSLDTKARRGAGGWTLEGRK FT SFITSGSAAEAYIVLAETDHGVSTFFVRRDMPGVSTFDGPTSGTFGLRNGPHVDLILDG FT VVVPDDHLIGVEGKGVRQAVTTLDFSRTMAGAISLGIARAAFDNALAYAAGREAFDQKV FT LGFQGIQWYFADLATRIDAARLLVYEACVALDEHREIARYASEAKLAASQVATRAAEQA FT IQICGAYGVTERAPFGRYLRDAKAYEIAGGSSEILKNTIGKQLLAFAAHHLSGTKT" FT misc_feature 690866..691192 FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 2.4e-05" FT misc_feature 691196..691492 FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 1.7e-15" FT misc_feature 691502..691951 FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 5.5e-54" FT CDS 691987..693495 FT /transl_table=11 FT /locus_tag="BB0657" FT /product="putative acetyl-CoA synthetase" FT /protein_id="CAE31157.1" FT /translation="MITDRLYALAESQPDAIALVFETRQYRYRELADMVSAMAARLHRA FT GVRPGDHIALMCGNRPAFLACWFALGELGAVCVPLNTGLVGEGFCYSLAKSESRLLIVE FT PELLAPRRDTLAAMEGAPPVLEIDAAMDLPPAEPPARWAGPPCAAGDLNSILFTSGTTG FT LPKGVTLPHGAYVAASDDMVQSLALTRADRILVFLPLFHANPQMYAVASVLGCGATLVL FT LRNFSASRFFDEAVAHGATGFTYVGTVLSILDKHYPEPRRDHALRWCVGGGAPARVWEA FT VESRFGISVRELYGMTETGGWVSMNTPQRARFGSVGHARAGIELAVVDEAGAPVAIGAK FT GEIVARSERPHVFFSEYWRNPEATAGTLKQGWLHTGDRGYLDEDGFLYFDGRQKELIRR FT GGEMIAPTEVEQQLLKHEQVRDCAVVGVPDDIMGEEVHAYVVLQGEPDAGALQAFLKAR FT LPAYMAPRYFSFVPAIPKTETQKIKRHLLADLPAQVVDLAVARR" FT misc_feature 692068..693258 FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 2.3e-107" FT misc_feature 692449..692484 FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 693527..694546 FT /transl_table=11 FT /locus_tag="BB0658" FT /product="conserved hypothetical protein" FT /protein_id="CAE31158.1" FT /translation="MTRRWKQRPPGSNWGDFGDDDQLGRLNLLTPEKVREAVAEVQEGI FT VFSLSLPLDMPGGNVLNPARHPPRLMPTRRDDKPMYLHAFEHDHNTTDVACDDMVAMSL FT QYSTQWDALSHIGSHFDADGDGVAEIVFYNGYTGKENFSHRREDRDSPSRAHRLGIEHM FT AAKGVQGRGVLLDLRRHFGDERKRVGYDDLMRVIEHDRVAVRKGDMLCLHTGFADVVLG FT MGGKPDAQRLARSCAVLDGSDSRLLDWIDDSGIAALIADNYAVEDRPYDFKGDGCHALL FT PLHERCLFKLGLHLGELWHLSPLAEWLERHERHAFLLTAPPLHLPGAVGSPLNPIATV" FT CDS 694556..695041 FT /transl_table=11 FT /locus_tag="BB0659" FT /product="conserved hypothetical protein" FT /protein_id="CAE31159.1" FT /translation="MALEIEDADGVPYVGLGLHFAEFPLGRRFRTVGRTITEADLVNFV FT NATGFTEVLFTDTEFVQAQSDMRGRVVPGALVFSMVEGLLMQACMQHTGFAFLEMELKV FT EGPTYVGDTLHVRCEVIEARPSKSRADRGLVRTRNHVVNQRGEVVMVYTPMRFVRRQ" FT CDS 695104..696087 FT /transl_table=11 FT /locus_tag="BB0660" FT /product="putative exported protein" FT /protein_id="CAE31160.1" FT /translation="MKKPIGILRATLLCGVAVLATGGHAFAQDNWPSKPIRLLVGFAPG FT GPTDNVARILAEKMGTELGQPVIVENKAGAAGNIAATALTQATADGYTLLYNTSSIVIA FT PWVYRSPGFDPLKDFAPAGLTAAVPLVLAANMQVPAQTPKALVDMVKAGPDKYNYASSG FT VGAIEHLTAAQLLSTLGLKATHVAYKGTAPAQVDLISGATQFTTTTLNTVIAPVQAGKL FT RALAITSRERWSGMPDVPTVAETLIPGFESLAWQGIVAPAGTPEPVLAKINKAINDALA FT SPDVRQKLDQQGTIVLGGSVDKYRAYIKSEYDRWGKVVEQAGARID" FT misc_feature 695104..695184 FT /note="Signal peptide predicted for BB0660 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 27 and 28" FT misc_feature 695116..695184 FT /note="1 probable transmembrane helix predicted for BB0660 FT by TMHMM2.0 at aa 5-27" FT misc_feature 695254..696075 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 8e-95" FT CDS complement(696133..696966) FT /transl_table=11 FT /locus_tag="BB0661" FT /product="putative enoyl-CoA hydratase/isomerase family FT protein" FT /protein_id="CAE31161.1" FT /translation="MSPPMTTPAPASPCYARFSVDEAGIGLLTLDDPATQNAMSLAMMD FT ALAAIHPVICATPQLRVLIVTGAGKAFSAGGNVHDMLERRGVFAPEDPLAARDLNLERV FT HAIPRAIHGLPMPTIAAVNGHAVGGGCDVALMCDIRIASDQAVFAESFLRVGLLPGDGG FT AWFLPRAVGLSRAMEMALTCDFIDAREAERIGLVSRVVPHSTLLDEAYALARRIARHPP FT RIARMTKRLMQFGAHATLHDTLEMTASMQGMVQTADEHKDAARAIADAVASRSRR" FT misc_feature complement(696361..696891) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 2.6e-48" FT misc_feature complement(696550..696612) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(696963..698366) FT /transl_table=11 FT /locus_tag="BB0662" FT /product="conserved hypothetical protein" FT /protein_id="CAE31162.1" FT /translation="MTRQRNREGLEFTAANAQAVEAFDETVKRYLQFHGDIGGALKATF FT AHDAQMPMALILRGYFYLLMGLRPLADKAAQLAAGLQPGRAALTEREQRHLDALACWSR FT DSLQAATEHWERIARAHPRDILAVKMAHFGYFYLGRSARIRDGIAQAIDSWSEDDALYP FT YMLSMMAFGQVEAGELARGEASGRRALELTPHDPWAVHAVAHALEPTDRKADALAWIAR FT HERHWSEANNFRHHIHWHRALIHLEQGDAQAALDWYDRTVFAADSVEYLDVCNEASLLM FT RLELSGVDVGRRWEAVAQKSAARIDDQVMGFADVHYAMALCSSANPEHRQQAQALAERL FT ERYSQGGTDNAQAYRQAVVPIVGALLAFRQGRYRESADALLACADVAHAAGGSHDQRDV FT YEYLTAEALFRAAPAHPDTIAYLARRSFRAPHNPHNWRLYLQSLEQSGQDRTLAAATAR FT RQAAAHATA" FT CDS complement(698363..699589) FT /transl_table=11 FT /gene="gcdH" FT /locus_tag="BB0663" FT /product="glutaryl-CoA dehydrogenase" FT /EC_number="1.3.99.7" FT /protein_id="CAE31163.1" FT /translation="MDTQTSSPDTKQHYQPFVWEDPFLLHEQLTEDERMIQATAHAYGQ FT EQLLPRIVHAHRTETFDRKIFLELGQLGFLGATLEGYGCAGVNHVSYGLIGREMERVDS FT AYRSSVSVQSSLVMYPIHTFGSEEQRQTYLPGLASGELVGCFGLTEPDHGSDPGGMATR FT ARGVAGGYRLSGAKSWITNSPIADVFLIWAKDDAGDIRGFILDRGMQGLSTERIDGKFS FT LRASITGTIAMDEVFVPQDRMLPHVKGLRGPFSCLNKARLGISWGALGAAEACLHQARD FT YVLARTQFGRPLASNQLVQKKLADMETEIAIGLQASLQVARLMDQGRVSTEAISIIKRN FT NCGKALEISRVARDMLGANGVSDEYHIIRHMINLEAVNTYEGTHDIHALIVGRAITGIQ FT AFYDSGSTQ" FT misc_feature complement(698402..698848) FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 7.9e-47" FT misc_feature complement(698858..699151) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 2.4e-13" FT misc_feature complement(699155..699505) FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 2.1e-17" FT CDS complement(699636..700436) FT /transl_table=11 FT /locus_tag="BB0664" FT /product="probable enoyl CoA hydratase" FT /protein_id="CAE31164.1" FT /translation="MSEFTPKTILVEVRDHVAWITINRPDAMNALARETVIEIDQALQL FT LEARADVHALVFTGQGRAFCAGGDLKYFKETVGSGDMNKFRAYLNLCQNMYRRVENFPH FT PTIAAVNGVAVAGGMELIISCDLVIAAESAKIGDGHANFGIIPGGGGAIRLPRKIPMAL FT AKRLLFTGNLLPARELAEYGLVNQVVPDEQLTEAVQALLAQITKNSPLGVRLIKQLIND FT GYEQPLDTALRLEVVAWESYGLSNDIKEGLQAFQDKRKPRFSGT" FT misc_feature complement(699867..700385) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 1.2e-49" FT misc_feature complement(700056..700118) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(700455..701639) FT /transl_table=11 FT /locus_tag="BB0665" FT /product="probable thiolase" FT /protein_id="CAE31165.1" FT /translation="MREAVIVSTARTPIGKAYRGAFNQTHGAELGGHSLRHAIARSKVD FT PAEIEDVIIGCGMPQGATGYNIGRQIAICGGLPIETGGTTVNRLCASGLQAIAIAAQRI FT MVDRVPVMAAGGLECISIVQDEHHNGVKKSPWIEAHKPHTYDAMLRTAEVVAQRYGVSR FT DAQDDYAFQSQMRTAAAQRDGRFDDEIVPMTTVKLSKNKETGATYEEEVTLLRDEGNRP FT DTTREGLATLQPVMEPDTSITAGNASQLSDGSSACILMEAKEAERRNLEPLGAFRGFVA FT TGCEPDEMGIGPILAVRTLFQRFGLRMEDIDLWELNEAFASQTVYCRDQLGIPNELLNV FT NGGAISVGHPYGMSGARMVGHALIEGRRRGARLVVVSMCVGGGMGAAGLFEVYR" FT misc_feature complement(700464..700838) FT /note="HMMPfam hit to PF02803, DE Thiolase, C-terminal FT domain, score 3.7e-50" FT misc_feature complement(700575..700625) FT /note="PS00737 Thiolases signature 2." FT misc_feature complement(700851..701639) FT /note="HMMPfam hit to PF00108, DE Thiolase, N-terminal FT domain, score 4.6e-63" FT misc_feature complement(701328..701384) FT /note="PS00098 Thiolases acyl-enzyme intermediate FT signature." FT CDS 701906..702880 FT /transl_table=11 FT /locus_tag="BB0666" FT /product="putative exported protein" FT /protein_id="CAE31166.1" FT /translation="MIRSLLVGLLLTLGPAAAQAAESPDRYPSKPITIIVPFSAGGPAD FT NVTRYIANQLGKTWNQQVVVENRTGAGGMIGAEAVARAAPDGYHLVLLVTGHTIMPGMQ FT ASMPYRMPQDFTGITVVNRAPKLVVVHPSVPVASFAELIEKVKQEPGKYGSYGTSGVGS FT MAHLSMELVNKLAGTKFVHIPYKGGGATQADLVAGRLPIGVLDLGSVLPHVQAGSLKVL FT AVTSDTRSPLFPDVPTIAEVIPNFQATEWFGIAGPKGVPPAIADKLQAAIKAALSTPEA FT RTRYIEGLGWELPASTPKEMDEVLASQTVKWGALVKELGLKAQ" FT misc_feature 701906..701965 FT /note="Signal peptide predicted for BB0666 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 20 and 21" FT misc_feature 702044..702868 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.4e-79" FT CDS 702882..704324 FT /transl_table=11 FT /locus_tag="BB0667" FT /product="putative acetyl-CoA synthetase" FT /protein_id="CAE31167.1" FT /translation="MDAVAMKSVTQLTVNADHLQGAIGALFKARTVAVVGISADHAKLG FT NVILRNVVKNGFAGNIYGVCRAPVEPGVFEAGYERVRFVQAFSEIEEPVDVALFAVPAD FT MVVTALASVPLGRLRLAVILASGFTETGERGASLETALRQYCLETQLPVVGPNCQGVVV FT PGVKLQMTFSPMYNQMLEGKVAIVSQSGAMAGYMANNLMRRGVGLCCVVSSGNEAVLTA FT ADYIHALADKPECRVVLCYIEQIKNGRHFARSVQRLGPQQRIVVVKSGRSTAGVAAASS FT HTGAMASDDRVIDGVFRQLGVVRARDSATAIDVAMALANGRRMKGGAVGILSVAGGLAV FT ELSDLLEMDGFTVPPFDPDTLERLKAKVPEFGASRNPIDLSGAILTQESLFEEVLNLFA FT RARNLDGFAIISTFIRNPAFAHAIVRMYRSTDKPVVVCWTGTPEQTPESLEILTRSGIP FT IYGDTGRVALALRAIRGDTDIS" FT misc_feature 702957..703307 FT /note="HMMPfam hit to PF02629, DE CoA binding domain, score FT 2.6e-05" FT CDS 704340..705053 FT /transl_table=11 FT /locus_tag="BB0668" FT /product="conserved hypothetical protein" FT /protein_id="CAE31168.1" FT /translation="MSTAISMAGAGTKLDEIDLLLQQWIDAGRQVVHEADSKRILAMAG FT FPVPGEARGGPAVVKLCADEALHKSELGLVALDVAPGDVERTRRELQERSRRAGVAGGE FT VLVESMVGDVLMEWFVGCRTDHTFGPVVVVGAGGIYAELLGAPEIRMAPLSARDAERAL FT RHHKAFPIIDGARGREPADIGAFARLIADVSEFYYRRSHLIAELDLNPVMVRGRHLDPG FT MVVADASIILQKPTF" FT CDS complement(705028..705984) FT /transl_table=11 FT /locus_tag="BB0669" FT /product="LysR-family transcriptional regulator" FT /protein_id="CAE31169.1" FT /translation="MQRMPPLNALRSFESAARHESFLKAAAELHVTPGAVSRLVKSLES FT YLGVELFMRSHRGVAITPQGKAFAEDILEAFNKIGIATDRVQQHPGDRGLSICCHPTFA FT AHWLTPRWAQVQAALPSTQINVKTTLAPELESTDDYDFVVKLGPDPAAEQACSGGVAAE FT RVLDVETFPICSSAFLQRHGGELGLDDIERYPLIHAQLRPQDWNRWLQSVGQPALRQAP FT ALVFESLTLAYNAAMSGAGMAIGIHAFIADDIASGRLVAPFPQVRKSHMGFNIYFNAQR FT AARVPRIEQIRRWMVQERNKTRATDTAAALRKSAFAE" FT misc_feature complement(705085..705723) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 3.7e-16" FT misc_feature complement(705787..705966) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 6e-23" FT misc_feature complement(705832..705924) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(705862..705927) FT /note="Predicted helix-turn-helix motif with score FT 1546.000, SD 4.45 at aa 20-41, sequence FT ESFLKAAAELHVTPGAVSRLVK" FT CDS complement(706204..707061) FT /transl_table=11 FT /locus_tag="BB0670" FT /product="putative hydrolase" FT /protein_id="CAE31170.1" FT /translation="MQRRDYRLAHAGLDFHVTEWGSPQGLPVVMLHGIRGYAETFAGIA FT AALQPEYRVIAFDQRGRGRTDWDADCNYYTDTYVADLAAVADQLSLARFDLLGHSMGGI FT NAIVYAARHPGRVGRLVVEDAGPGAFEDSDGARRIRRELAETPAGFASWDAASDFMRSL FT RPSVSEQARQQRLESMLKPAPEGGYVWRYDHAGIARTRLHPDPARVVDLAAYVARIGCP FT TLLLRGGRSDYLQPAMVERMRALNPRIEAVEIADAGHYIHDDQPAAFARHVCRFLKPHA FT PAGA" FT misc_feature complement(706231..706908) FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 1e-25" FT CDS complement(707087..707689) FT /transl_table=11 FT /locus_tag="BB0671" FT /product="conserved hypothetical protein" FT /protein_id="CAE31171.1" FT /translation="MKTPNFSVYHIRKWYLQVEDTLAGETGAPADGEPLRKIVLAACIH FT NPYAGKYVEDLTLWIDASPGLGAEFGRRVREAAQGQAIASYGKACLVGADGEYEHGNAL FT LTNPAANPVRDALGGAKSWVPSTGKRGGPGTIIDIPLAHKDALYVRSHYDTVSAQFNDG FT PNRDEVVLIWAFATRGRLNARLGGLAACDVQGHDGLN" FT misc_feature complement(707222..707251) FT /note="PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family FT signature 1." FT CDS complement(707730..708764) FT /transl_table=11 FT /locus_tag="BB0672" FT /product="conserved hypothetical protein" FT /protein_id="CAE31172.1" FT /translation="MQGTILVGTAGQGILRSNDNGASWHRLGLKEAIEFDGTVRSLAVD FT PANPARVLAGADAGICLSTDGGAHFSLVDSPANGQTIWSVAFSPRDPRLVFAGSGAPSR FT ARMYRSRDGGQSWEQLSPELPEFCSGVHRPRILTVCAHPERAEEVWFGVEEGGAWRSTD FT AGDTWERIDAPGRGINNSDIHSITLLPAASGQPATQIVVTVNSVCQSVDEARSFDCQAS FT RERFDGLYYTRAVYPLDAAGQTLLLAVGDGTPGTRTRIYRSEDRGRSWAPALLHTAPNS FT TVWAFGAHPSDPALVFAGTKYGHLLRSTDGGRSWYKEWRDFSEITSVAWTPHVAPVHAH FT PQSI" FT misc_feature complement(707814..707849) FT /note="HMMPfam hit to PF02012, DE BNR/Asp-box repeat, score FT 3.5" FT misc_feature complement(707949..707984) FT /note="HMMPfam hit to PF02012, DE BNR/Asp-box repeat, score FT 15" FT misc_feature complement(708255..708290) FT /note="HMMPfam hit to PF02012, DE BNR/Asp-box repeat, score FT 1.2" FT misc_feature complement(708408..708443) FT /note="HMMPfam hit to PF02012, DE BNR/Asp-box repeat, score FT 0.45" FT misc_feature complement(708549..708584) FT /note="HMMPfam hit to PF02012, DE BNR/Asp-box repeat, score FT 1.5e+02" FT misc_feature complement(708687..708722) FT /note="HMMPfam hit to PF02012, DE BNR/Asp-box repeat, score FT 14" FT CDS 709017..709655 FT /transl_table=11 FT /gene="gst" FT /locus_tag="BB0673" FT /product="glutathione S-transferase" FT /EC_number="2.5.1.18" FT /protein_id="CAE31173.1" FT /translation="MKFYHEVRGCSLAVDIVARELGLALDLQWVDMANKRLADGSDYLK FT VNSKGTVPTLELSDGQFLSEGAVIMQYLADQRPQQGMLPAAGTLARYRVLEWMSFIAAD FT LHKGGFMPLFKAITPPEYRRIARQYLDGRLQWLNDQLAGREFLMGETFTIADAHCYTIA FT MWTRAHDIDTSAWPHLEAYLARVGARPSVRAAEQAARDEGERQRAAAAR" FT misc_feature 709023..709241 FT /note="HMMPfam hit to PF02798, DE Glutathione FT S-transferase, N-terminal domain, score 4.1e-05" FT misc_feature 709269..709586 FT /note="HMMPfam hit to PF00043, DE Glutathione FT S-transferase, C-terminal domain, score 1.9e-14" FT CDS 709693..710658 FT /transl_table=11 FT /locus_tag="BB0674" FT /product="putative exported protein" FT /protein_id="CAE31174.1" FT /translation="MNWTKRIAIVLAGLAAAPLALAADPAAPLKLVVGFPPGGGTDGAA FT RIVAEHLPQQLGRPVVVENRAGAAGTLGAQVVRRAPPDGNTLFFGTSAELLINPITRKT FT APYDVQKDFMPVTEVGSVAFVLVAPASSTVRSVPDLIAAAKARPGKLNFSSFGMGSTNH FT LIGELFLSTTGISASHIPYQGSAQAMTALLAGDVNFTFDTVAVAQPHIQSGKLIALATP FT SPARLAELPEVPTLRELGYADLTAEGWMGIFAPVGTPPQDIASLNAAFAKVLALPDVRA FT KLAARGVGIVGGSPEQYRDKLATESRKWRQVAQDSGISLE" FT misc_feature 709693..709758 FT /note="Signal peptide predicted for BB0674 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 22 and 23" FT misc_feature 709822..710646 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.3e-98" FT CDS complement(710704..711690) FT /transl_table=11 FT /locus_tag="BB0675" FT /product="putative exported protein" FT /protein_id="CAE31175.1" FT /translation="MKRRTFNIGLLGLMASGALVRTRPAMAQDAALPSLVTLVAPFAPG FT GGADQLAREFAHFAQSRAPGTTFVVENKPGANGAIAARHVARQQPDGATLLLGTSSTHA FT LGPLIAKADPALIVKEFSPVTLLATTANVLAVASTSRWKTLDDFVADARGQALTYGTFG FT TGSSAHLYGLLLAQSTGARLSHVPYKGSSQAATDLLGGHIDAVFLTSSALEGLAREGKV FT RVLGVTGKTRTRVFPDARTFEEQRVAQLDFSGWFGLFAPAGTPAPRREAIAALAASLGK FT DAAASQRMTGQGYDWVGSSPQALQDSLLDTLGIYQKVLATRPDGLGG" FT misc_feature complement(710713..711540) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.7e-44" FT misc_feature complement(711610..711690) FT /note="Signal peptide predicted for BB0675 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 27 and 28" FT CDS complement(711833..712531) FT /transl_table=11 FT /locus_tag="BB0676" FT /product="putative GntR-family transcriptional regulator" FT /protein_id="CAE31176.1" FT /translation="MRMMEPDVPHDGATDDKASMPLRRQAEDALRKTILSGRFMPGERL FT KERELMELLNASRTLVREALRQVEAEGLIEIVPNRGPVVAVLSYEEAEEIYEVRGILEA FT QTCTGFALRAGSGHMKTLAAAFDALSEAARQGDIPRTLALSDTFYDTIAAGCGNRLLGN FT MLRQLHNRIVLLRRTSLSEPSRLPETLYELTQIFEALKARDEIAAGKAALHHVRQASRT FT ALQVLRSRQS" FT misc_feature complement(712280..712456) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.6e-12" FT CDS 712745..714274 FT /transl_table=11 FT /locus_tag="BB0677" FT /product="probable aldehyde dehydrogenase" FT /protein_id="CAE31177.1" FT /translation="MTTVHSATPEETRRLLQQLGVDPARYDGGTLEVRSPIDGQAIARL FT PELTAEQARARVADARQAFLAWRKVPAPRRGELVRLLGEELRAAKAELGRLVSIETGKI FT LSEGEGEVQEMIDICDFATGLSRQLYGLTIATERAEHRMMETWHPAGPVAIISAFNFPV FT AVWAWNAAIALVCGDSLLWKPSEKAPLTALATQALLERALARFGDAPAHLSQVLIGGRE FT VGEALVDDPRIPIVSATGSTAMGRKVGPKVAERFGRSILELGGNNAAIICPSANLDLAL FT RGIAFSAMGTAGQRCTSLRRIFVHEQIADDLVARLKQVYESVAIGDPRDSGTLIGPLRD FT QAAFDAMQRSLADARAAGGRVTGGAREPVGGHDQAYYARPALVEMPAQSEVVERETFAP FT ILYVMRYRDLDEAIALQNDVPQGLSSSIFTNDLREAERFVSAEGSDCGIANVNIGPSGA FT EIGGAFGGEKETGGGREAGSDSWKAYMRRTTNTVNYGNALPLAQGVKFDVA" FT misc_feature 712826..714226 FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 2.1e-133" FT misc_feature 713525..713548 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT CDS 714291..715454 FT /transl_table=11 FT /gene="metC" FT /locus_tag="BB0678" FT /product="cystathionine beta-lyase" FT /EC_number="4.4.1.8" FT /protein_id="CAE31178.1" FT /translation="MKPDTRLVHLGRDPERFEGLVNIPPCRTSTFLHASVADYQAAASR FT KQDSLYYGRFGSQTSRALEAACTELDGGHGAMLFPCGLAAITRVLGSLLEPGQHLLMAD FT TVYGPARAFCEQELARLGVETTWYAPDADLDALVRPATRVIYGEAPGSLTFEMQDLRAL FT AEVARRHGLVSVVDNTWATSWFCQPLALGIDISIQSASKYIVGHSDAMLGVAVANEAQF FT PALRRAAAQYGNAVSPDDCYMALRGLRTLGVRLERHQASALRVAQWLRTRAEVEQVLHP FT ALPDSPGHALWRRDFSGASGLFGVAFRAGDDAALARFVDDLRLFGIGVSWGGFESLALP FT SHPVRNTSAAALGGRPLVRLHIGLEDPDDLIADLARALDRHMAAARG" FT misc_feature 714300..715427 FT /note="HMMPfam hit to PF01053, DE Cys/Met metabolism FT PLP-dependent enzyme, score 4.8e-114" FT CDS 715485..715835 FT /transl_table=11 FT /locus_tag="BB0679" FT /product="conserved hypothetical protein" FT /protein_id="CAE31179.1" FT /translation="MSDIQYVETSPRYSKAVIHGDTVYLAGQVADDPGGTVQDQMRQIL FT AQIDALLARCGTDKSRLLSAMVLLKDMRDLEAINPLWDAWVVPGRAPTRTPSEARLALP FT GYLVEVQVTAAR" FT misc_feature 715503..715829 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP, FT score 1.4e-20" FT CDS 716138..717097 FT /transl_table=11 FT /locus_tag="BB0680" FT /product="putative exported protein" FT /protein_id="CAE31180.1" FT /translation="MKKLIVAALFAVLPSMVGAQQAPRGTMTIVNPFTVSGLTDLVARM FT VAEKAHAKFPDGVAVVSRPGGGGSIGIASVVNARPDGSSIGFTPTGAVVDAPQMMKGLA FT YKTPDDIDPIINVFSSYQMLAVRGDADWKTAQDFIKAVRQSPGKYSLGHTGNGTASHLN FT MAQLVQAAKLNVLEVPYKGWAQSSVALLGGHVDAIVINAGEGRALVDEGRLRILGVFQA FT QRVPYHPDVPTFKEIGYDVGVGLKFFFFGPRNMDAGVKQYIHDAFKQAMQNDDFKKFIA FT SREVEVDYMDGAQTKAMLWSEYKQHTKLLDSLGLLAKQ" FT misc_feature 716138..716194 FT /note="Signal peptide predicted for BB0680 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.961 between residues 19 and 20" FT misc_feature 716261..717082 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 9.1e-38" FT CDS 717122..718234 FT /transl_table=11 FT /locus_tag="BB0681" FT /product="conserved hypothetical protein" FT /protein_id="CAE31181.1" FT /translation="MASIKGLREVAYFDCAGGGQVYVQGNYAYIAHMDAPAGTTIVDIS FT DPRHPRQVAHIPIPDGVHTHKVRVENDLMLVNWECPPPYILGENFQGGLAIYDVSDPTN FT PRQICFWKTAGTGVHRFDFDGRHAYITPEVEGYHLNIAMILDLENPAKPREVGRWWMPG FT QWVAGGETPDEGYRMTWCHQVLRRGNRLYVAYWHGGMVILDIEDMSKPKLVSKFAYSPT FT FAHPTHTVLPLPFELAGRKIAIVADEDVRKVRPSPPPFMWLFDITDETQPVPISTYQIE FT ELMDKNMPEFTGCHQPAEQVYGTEIPVAWFAKGLRVVDVKNPHAPREVAHFEPDIPGFD FT RAQTNDVFLTKEGLMYIIDRNRGMHILERI" FT CDS 718249..719271 FT /transl_table=11 FT /locus_tag="BB0682" FT /product="conserved hypothetical protein" FT /protein_id="CAE31182.1" FT /translation="MSEATRKVPVTVLTGHLGAGKTTLLNRILTGQHGRKYAVIVNEFG FT EIGIDNDLIVESDEEIYEMNNGCICCTVRGDLIGILHKLLRRPGRFDAIVVETTGVADP FT APVVQTFMMDEEVREKTELDAVITMVDAKHFPLRLADSQEAEDQIVYADVVLINKVDLV FT SAGEADQVQRRVAAINPYAACHRVQRAEIDLARILSIGAFDLQRCVELEARAAPAGCGH FT EHEHDAHCQGGTDHHHHHHEISVMSVSLQAGALDGRRFFPWIHSLVEKQGPDILRMKGI FT LALDDDARRYIIQGVHMIVEGEHQRAWRDDEPRASKLVFIGRGLDAQALRAGFEACRSQ FT " FT misc_feature 718267..719262 FT /note="HMMPfam hit to PF02492, DE Cobalamin synthesis FT protein/P47K, score 1.9e-139" FT misc_feature 718291..718314 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 719268..720269 FT /transl_table=11 FT /locus_tag="BB0683" FT /product="conserved hypothetical protein" FT /protein_id="CAE31183.1" FT /translation="MKMLNRLDLGVPCLRAGFAGEQAFFLAMDGRLHVQQGDQRRVVAL FT HDGDVLSACAAPGQADAAAWLLSAGEDGRVMRAGAGEPDCVASVPNKWVTALAVAADGA FT LAYASGRTVWLAGGGGEAAALPQERPVQALRFSHGGRWLAVAGYDGLALYDRQAGGEPQ FT RLDWKGMPTRVAFSPDDRFVLVATRDAVLHGWRLDTLRHFRMVGYPRAVGSWSWLAGGQ FT WLATDGSAGAVLWPFEGEEGPIGSTPLALGERPDGEVSAVACHPARPWVAVGYADGLMV FT LESTDGALRRILGQAGRDRVACLAWDRAGARLAYGTPSGACGVIQADTGEEG" FT CDS 720272..720562 FT /transl_table=11 FT /locus_tag="BB0684" FT /product="hypothetical protein" FT /protein_id="CAE31184.1" FT /translation="MCAEVDYEDRGTYRKVPPPSEALVERTRQVEAGMPGERVPEQAWG FT TFFAVSCGVMDMGSFQRMFEARRIALSYLAMQRARYARRHGGGTGLRCIGD" FT CDS 720652..721395 FT /transl_table=11 FT /locus_tag="BB0685" FT /product="transcriptional regulator" FT /protein_id="CAE31185.1" FT /translation="MGKTLVKGLHLLERLAASPEPMGITELAADLDLVQSNVHRLLQTL FT MESGYVQQDALTRRYRCTMRLWEMGTQIADRMDLSRIARPHMQALVKQSQETVHLAILD FT GADVLYIDKIDSPQPVRSYTRVGGRAPAYCTGTGKMLLAYCDDLAAALPAKLVKHTARS FT IASHAALKAELRRVREEGFSENAGEWREDVYGMGAPLFDATGKVSAAIGISGPLARMDA FT AVVARVRPMLQETARIISRELGYRG" FT misc_feature 720715..720780 FT /note="Predicted helix-turn-helix motif with score FT 1370.000, SD 3.85 at aa 22-43, sequence FT MGITELAADLDLVQSNVHRLLQ" FT misc_feature 720829..721377 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 8.3e-54" FT CDS 721788..722678 FT /transl_table=11 FT /gene="dapA" FT /locus_tag="BB0686" FT /product="dihydrodipicolinate synthase" FT /EC_number="4.2.1.52" FT /protein_id="CAE31186.1" FT /translation="MLISARTLRGIITATPTPFTREGGVDREVLRSHIEFLIGRGAAGL FT APLGGTGEYPALCARERADVVRWTVEAARGRVPVVAGVLATGYEDAVQAGLAAREAGAD FT ALMVVTPYYALAGDAGVRAYFERYRAAVDLPIVLYEIPRRTNVELRAETIAAMAGDGTI FT VGIKYSGSDFAKLTRLIHLAGDTLAVLSGEEPLFPAAVALGAVGGVLAMSNLDPAPWAR FT IQSLVESGEMAQALQLHHRQGALADAVYSEMNPVGLKAALQLKGFAFGEARLPLQPAGP FT QTLLRLQQAFEALES" FT misc_feature 721806..722672 FT /note="HMMPfam hit to PF00701, DE Dihydrodipicolinate FT synthetase family, score 1.1e-59" FT CDS 722679..723914 FT /transl_table=11 FT /gene="aatB" FT /locus_tag="BB0687" FT /product="aspartate aminotransferase" FT /EC_number="2.6.1.1" FT /protein_id="CAE31187.1" FT /translation="MNTIYDSAAVAAGRRVAARMARVTTSKIYLAIAKVADMQAQGMQV FT ASLTAGEPDFDTPAHVIEAAVQAMRGGDTHYTPVRGSLAMREAVRQKFQRENGLAFRDE FT EVMVGTGSKQVIANALAVTLETGDEVLLPVPYWAAYTGMVYAAGGVPTFVGTRAEDGYK FT LTPQALRAALGPRTRWVILNTPSNPSGLVYGSDELRALGEVLRERPDVLILTDEIYEHL FT NYTAEPPASLRKLCPDLAERIVVVNGVSKAYAMTGWRLGFAGGPADIIEAMANLQAQTT FT LAPCSISQAAAVAALNGPRESIDAMAAAYRRRRDLVMQIAGGQPGVRLQRPDGAFYAML FT DLSEALAGGERFRGDPEPDQAFCEWLLETRHVAAVPGSVFGAPGSVRISFATDEQTIER FT GLTGLLDAAAHC" FT misc_feature 722949..723902 FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 1e-55" FT misc_feature 723420..723461 FT /note="PS00105 Aminotransferases class-I FT pyridoxal-phosphate attachment site." FT CDS 723999..724829 FT /transl_table=11 FT /locus_tag="BB0688" FT /product="probable solute-binding periplasmic protein" FT /protein_id="CAE31188.1" FT /translation="MNAVIRKMPAMLKWLMAVPLALGLAHAHAETVLEKARAKNEIRIA FT TSDSLKPWGYMDDTNKPIGFNLDVSREMGKRMGFGKVTFVTDSYKNFISGLNADRYDMV FT VAILTPTEERRKSADFSNPYMVVSKNIFVRDDNTSIRSLEDLAGKRLGVAAGTTDEAWA FT RQHVKDAQIRVYDNFFLALQDLAIGRVDARITDRVTGMTAAKEGRFPVKIAGPDLSQDI FT GAIAYKKGQDDLAAIVNKVIQEMVDDGSLNEISRKWLAGIEMGEELKKLPKDAR" FT misc_feature 723999..724085 FT /note="Signal peptide predicted for BB0688 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.735 between residues 29 and 30" FT misc_feature 724122..724781 FT /note="HMMPfam hit to PF00497, DE Bacterial extracellular FT solute-binding proteins, family 3, score 4.5e-59" FT CDS 724826..725476 FT /transl_table=11 FT /locus_tag="BB0689" FT /product="putative permease component of ABC transporter" FT /protein_id="CAE31189.1" FT /translation="MIELLHKAAPIIQGALLMTLLLGLSSAVLGTALGLVLALFRLSPV FT APLRWLAFWYVSIFRGTPLLLQLLLIYFGLPHYGIELEPVPTAILALSLCSAAYLSENF FT RSGILGVDRGQIEAAQSLGMGAARSLFRIILPQAIRIAAPTMGTRYIALMKDTSLASTI FT TVVELTKMAEQVGSNTFRYMEMFIIAGALYWVINQMLTFIQVWVESKLGKGVA" FT misc_feature 724826..724915 FT /note="Signal peptide predicted for BB0689 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.937) with cleavage site FT probability 0.645 between residues 30 and 31" FT misc_feature join(724868..724936,724973..725041,725084..725152, FT 725378..725446) FT /note="4 probable transmembrane helices predicted for FT BB0689 by TMHMM2.0 at aa 15-37, 50-72, 87-109 and 185-207" FT misc_feature 725144..725368 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 3.8e-14" FT misc_feature 725147..725233 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 725476..726255 FT /transl_table=11 FT /locus_tag="BB0690" FT /product="putative ATP-binding component of ABC FT transporter" FT /protein_id="CAE31190.1" FT /translation="MQHDQAAGAPVVQVEGLRKSFGANAVLKGVDLTIRRGEVVVVMGP FT SGSGKTTFIRSLNFLEVPDEGAITICGTQVAVQARAGLKREQRRRVREIRQKTAMVFQS FT FNLFSHMTVIKNIIEGPVQVKGAARDQAIEQARALLRQVGLAEKENEYPSRLSGGQKQR FT VAIARALAMKPEVIFFDEPTSALDPELRDEVLSVMRKLADEGMTMVVVTHEVRFARDVA FT DRVIFMEGGVVLEDAPSASFFDAPASERIRQFLRRVQ" FT misc_feature 725584..726168 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2e-64" FT misc_feature 725605..725628 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 725941..725985 FT /note="PS00211 ABC transporters family signature." FT CDS 726252..727490 FT /transl_table=11 FT /locus_tag="BB0691" FT /product="putative peptidase" FT /protein_id="CAE31191.1" FT /translation="MTAGARPGWAADPLVEAVGRETGELMRGIRHDLHAHPELSFEEHR FT TAGRVRACLQEWGIPVLDGLGETAVVGVLRAGGGGQAIGLRADMDALPIHETNTFGHAS FT RHAGRMHACGHDGHTAMLLGAARYLQRHPDFDGTIYLIFQPAEENGRGARAMIEAGLFR FT DHPMQAVFGLHNWPGLAAGKFALTAGPIMASSSRVKVTYTGKGGHAALPEQAIDPVAAV FT AALHQALQTVVTRNTAAHDSVVLSITQLGGSDNHCVIPDQAWLAGSLRTLSPAVLERTC FT ARIRDIAQGVAAAFSCAARIEIEHAVPATINDAGATALCRDAIVQWLGAKWLNDGFIPT FT MGAEDFAFMLQALPGCYLMLGNGGGREGETATVCGLHNPGYDFNDEIAAVGAAYWVRLA FT GHCLPRGGAGPLA" FT misc_feature 726318..727271 FT /note="HMMPfam hit to PF01546, DE Peptidase family FT M20/M25/M40, score 6.2e-70" FT CDS 727563..728360 FT /transl_table=11 FT /locus_tag="BB0692" FT /product="probable transcriptional regulator" FT /protein_id="CAE31192.1" FT /translation="MASKKAAGEADKDHLFVNSVAKAFRLLEAFDKSRPMSGFSQAARE FT IGMEKSAAQRAAHTLWRLGYLDKVGRDGEYRLSRRCLDIGQRYLETNRLVVCTNPYLKF FT LRRKTNASVNLAMLDGTDTVFPVRYTSQEMLNNDLGERARIPAYCTATGIAIFSAMPDE FT AVREVLERSDLKPLMPNSIWQMDRIMERVESARRDGYVLGVEEDFASDITIACPISDPA FT TGDVAAIGVSYSSEVTAVEQVVQDWCPLVMSTAREVTARLAES" FT misc_feature 727785..728345 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 5.5e-22" FT CDS 728398..729669 FT /transl_table=11 FT /gene="amaB" FT /locus_tag="BB0693" FT /product="N-carbamoyl-L-amino acid amidohydrolase" FT /EC_number="3.5.1.-" FT /protein_id="CAE31193.1" FT /translation="MTAAFASLGQTIVEQAARLASHSDMEGGLTCAYLTPAHRATQAQL FT AQWMEAAGMAVRIDAIGNVIGRYAADPAVPAPRVLMTGSHFDTVRDGGRYDGRLGILLP FT VAVAGALRDAGVRLPYHLDVVAFAEEEGLRFKTSFLASGVLAGSFDPALLARQDADGVT FT LAQALAASGLPGAGDPAALRAAALDPATLLGFVEVHIEQGPVLLHHGLPLGVVTQIAGS FT SRFMARVEGMAGHAGTTPMNLRQDAGAAAAEMVLLVESRCSQVPTLVGTVGQLQVPNGS FT GNVIPGVCQFSIDIRAAEDPVREAAVADVRAGIEQIARRRGVRVSLDAVPPVGSVPCAR FT WLMDQFGAALSEAGLAVHELPSGAGHDAMVMQRIADVAMLFVRCGNGGVSHNPLETLSA FT EDAQQAAEVFAAFLRRFAPRGSGR" FT misc_feature 728434..729492 FT /note="HMMPfam hit to PF01546, DE Peptidase family FT M20/M25/M40, score 8.8e-12" FT CDS complement(729666..730940) FT /transl_table=11 FT /locus_tag="BB0694" FT /product="probable amidase" FT /protein_id="CAE31194.1" FT /translation="MQPLHLLGLHEARERLMAGACDSVDLVQACLDRIAAREEQIRAWA FT WVDAAGALRKARAMAGARPDPRRPLAGLPIAVKDIIDTADMPTAYGSPIYAGHRPAWSA FT YCVAAIEAAGGIILGKTATSEFAHSAPPATRNPHAPQHTPGGSSGGSAACVADFMAPAA FT LATQTGGSTIRPAAFCGVVGYKPSLGLIDRTGVKPMAESLDTVGLMARAVADIQLLAGV FT LAGVPAAPPGSAAPRIGLYRTPHWERIDARSRDALLARLRRLERHGARVAEVPDLPALH FT PLYQDQRDIMNQQASRALLHEYRQHREQLSPALRAALEAGQACSPDALRAAWQRTRRAR FT RAYAELWADYDLIVTPAALGAAPAGIASSGDSLLNRNWSLLGVPTLSLPNGADPRGLPL FT AMQLAGSHGGDAALLGWARWIEAAA" FT misc_feature complement(729699..730868) FT /note="HMMPfam hit to PF01425, DE Amidase, score 8.2e-85" FT misc_feature complement(730125..730169) FT /note="PS00616 Histidine acid phosphatases phosphohistidine FT signature." FT misc_feature complement(730578..730601) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(730949..731875) FT /transl_table=11 FT /locus_tag="BB0695" FT /product="putative polysaccharide deacetylase" FT /protein_id="CAE31195.1" FT /translation="MTMQTDRSLLTRRDFVGYGSTPPDPQWPGQARLALNIVVNYEEGS FT EASFEDGDGRSELGLTEVTGSSFQGRDLAAESMFEYGSRVGIWRVLRLLRERGMTATFF FT ACAQALERNPAVAQAIRAGGYDVCCHGWRWTPLQALSEAQEREEMQRAVASIERTTGQA FT PAGWYCRYAPTVNTRKLVLEQGSFLYDSDSYNDELPYWVDAGDRHHLVIPYTQAHNDAK FT FVRSGIATADDFFAFLRDSFDMLYAEGATQPKMMSVGLHMRLVGHPGRAAGLARFLDHV FT AAHERVWVCRRLDIARHWHGLHRPAAR" FT misc_feature complement(731249..731656) FT /note="HMMPfam hit to PF01522, DE Polysaccharide FT deacetylase, score 5.9e-05" FT CDS complement(731872..732363) FT /transl_table=11 FT /gene="allA" FT /gene_synonym="glxA2" FT /locus_tag="BB0696" FT /product="putative ureidoglycolate hydrolase" FT /EC_number="3.5.3.19" FT /protein_id="CAE31196.1" FT /translation="MSSMYLSASTLSADAFSQYGEVVENRGDTAKRPLSTPFGSARQGV FT TLGFTVNRLHRQPLDGIRVRTLERHPHSAQTFIPLVPSRHVVVVGLSGPDGALALPTLR FT AFVTNGRQGVSYRTGVWHYAFTAIDTDSQVAVILGKTGRDDDTEYTELDQDALVVFHEE FT " FT CDS complement(732380..733672) FT /transl_table=11 FT /locus_tag="BB0697" FT /product="putative membrane protein" FT /protein_id="CAE31197.1" FT /translation="MLLGALYFGGLVLFLMAGIHVASAIFMTAVVSDWMSMQVLPSMIG FT NTMWSTMNEFLLVAIPLFILLGEILTRSGVADRMYKALAAWLQWLPGGLLHTNIATCAL FT FAATSGSSVATSATVGTVALPTLQRLGYRERLVLGSIAAGGTLGILIPPSINMVVYGAL FT AEVSVGKLFAAGIVPGIIVLLLMMAVIVIMALLGKVAPDNEKLIIPLAMRLKLLIDVLP FT VVFIFGLVMGGIYLGIATPTEAAALGVVGAIAIAAANRTLSVAMLHAAFLSALRTTAMV FT VLVVTTAFVLNFSLSLAGIPQALSEYIGQLGWSPTATIWVLVAFYLILGCFLEAIAMMV FT TTVGVVVPLIVSLGFDPLWFGIFMTMMMELALITPPVGLNLFVAQNIRLSRGGISDVYI FT GVLPFAFAMMVFVTLLIYFPQIALWLPNRLF" FT misc_feature complement(join(732416..732484,732521..732589, FT 732617..732670,732674..732742,732770..732838, FT 732875..732943,732956..733024,733085..733153, FT 733196..733264,733460..733528,733586..733654)) FT /note="11 probable transmembrane helices predicted for FT BB0697 by TMHMM2.0 at aa 7-29, 49-71, 137-159, 174-196, FT 217-239, 244-266, 279-301, 311-333, 335-352, 362-384 and FT 397-419" FT misc_feature complement(733577..733672) FT /note="Signal peptide predicted for BB0697 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.807) with cleavage site FT probability 0.350 between residues 32 and 33" FT CDS complement(733672..734286) FT /transl_table=11 FT /locus_tag="BB0698" FT /product="putative membrane protein" FT /protein_id="CAE31198.1" FT /translation="MTRLLELLCGGLRAITNRACLAAGWALIALSVVIALNVLARKIFS FT FSLQGVDEYGGYCLAICASIGFSQAAYDRAHIRISVLTDLLPQRLRACSDVFALALLTS FT VALTLAVKATGVAYDSYSMQALATSALRTPLAIPQAMWAAALCWFGLVLATQLLHSLLL FT LARRDWGGINRNYGNPSVDEEVAEELRSANERMAGKLEGAH" FT misc_feature complement(join(733795..733863,733933..734001, FT 734071..734139,734167..734226)) FT /note="4 probable transmembrane helices predicted for FT BB0698 by TMHMM2.0 at aa 21-40, 50-72, 96-118 and 142-164" FT misc_feature complement(734221..734286) FT /note="Signal peptide predicted for BB0698 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.717) with cleavage site FT probability 0.564 between residues 22 and 23" FT CDS complement(734349..735395) FT /transl_table=11 FT /locus_tag="BB0699" FT /product="putative extracellular solute-binding protein" FT /protein_id="CAE31199.1" FT /translation="MKAILQRSIALLALAAGMSSVACADEVKMRVLGWYGNQPQSQQVE FT RPFWKDLPKRSNGAFSANFRTIDELGLKGFESLRTLQSGAFDVVSFQISFVGGDAPVLM FT GADLPGAAFDFDQLQKNLDAYRPILEKELNDRFKAKLLTAWSFPFQILYCKGDIKTLDD FT LKGKKVRVSGTYTAKMVADLNAAGATLAGPEVYQGLMQGVVDCAITGSQYGNSNDWFEV FT AHSLSPIPLGGAGVVLQVARNAFWDKLSADQQAALSAEMKQLETALWDISRKGHEDGIN FT CNVGKQPCTGKPGKMQLVEPTEADVREVKQLLKTSIVPMWIEDCSKFSKTCGDDWFRTI FT GAAAGIAR" FT misc_feature complement(734424..735302) FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 3.6e-08" FT misc_feature complement(735324..735395) FT /note="Signal peptide predicted for BB0699 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.796 between residues 24 and 25" FT misc_feature complement(735327..735359) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 735537..736442 FT /transl_table=11 FT /locus_tag="BB0700" FT /product="putative LysR-family transcriptional regulator" FT /protein_id="CAE31200.1" FT /translation="MNLRLIEIFRAVMQSHTTVGAARALQISQPAVSSAIRQLESQVGF FT TLFDRVGNRLSATEEAKILFRDSESIFLLSKALNHTVEELKNERLGQLRIVATPQLGHS FT VLPAAINDLLKQRPKVKVFFDVRRSYNVVEIIESRAADIGFAIALEPELEQKLHMLPVA FT RVQMVCLAPADHPLARRKSVTPQDISPYPLIGLELGSRLSPLVLNAFKQAGTPYRTAVE FT VRYSETACLLAQAGVGVTVVDLFSAMAQARHGGGLKIIPFKPAIEVEAFAVSAKNRVPS FT RLALLLVEETQKSIRRFQPA" FT misc_feature 735543..735722 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.2e-18" FT misc_feature 735582..735647 FT /note="Predicted helix-turn-helix motif with score FT 1277.000, SD 3.54 at aa 16-37, sequence FT HTTVGAARALQISQPAVSSAIR" FT misc_feature 735585..735677 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 735792..736424 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.6e-39" FT CDS 736544..736930 FT /transl_table=11 FT /locus_tag="BB0701" FT /product="putative exported protein" FT /protein_id="CAE31201.1" FT /translation="MRLLPAMGALALLLHAPAAPAQDFDRHGHALVRDAQGWVYIDRAH FT RPVLRPFIYDNGPDYYEEGLARFVEHGRMGFHDEALNIVIPAEYDFVFPFQGGKARAGM FT DCRVQRHGEHGSVSCRRWTTLTRP" FT misc_feature 736544..736606 FT /note="Signal peptide predicted for BB0701 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.807) with cleavage site FT probability 0.797 between residues 21 and 22" FT CDS complement(736927..737610) FT /transl_table=11 FT /locus_tag="BB0702" FT /product="putative GntR-family transcriptional regulator" FT /protein_id="CAE31202.1" FT /translation="MSARSAPKSQTRSSTEISEEILRRIQSGRYLPGDSLSQYELASEF FT GTSRTPIREALRFLEARRAISLTDTGRAMVAIPSVRAIREAFEVRAELEGLAARLAVDW FT IEDKHLKLLAQHQKHYASTLRSRVRNERGSEWLQHNFDFHHLITELSHNERLLDMVSEL FT QSSSVSDVLGFASKMPPRLMEENIQQHEAIIAALTRRDGAAAREAMIEHVLRTMRLVID FT WMESR" FT misc_feature complement(737386..737562) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.7e-10" FT misc_feature complement(737440..737505) FT /note="Predicted helix-turn-helix motif with score FT 1509.000, SD 4.33 at aa 36-57, sequence FT LSQYELASEFGTSRTPIREALR" FT CDS 737882..738367 FT /transl_table=11 FT /locus_tag="BB0703" FT /product="conserved hypothetical protein" FT /protein_id="CAE31203.1" FT /translation="MSDIDPITSARILNPGGRGGPLTEAHQPMRAMHRDDIEWENLRYE FT GQFSKMMFHPVQDDRTIPNAGIVRYEKGSGHPLHNHYFAQIWYVLSGKFEIEGKVYGEG FT SMMFHPDPHYEYALNTLEDGEILYVQYMGPTTRQPAIYEGRFNMETRRPLEDESTAA" FT CDS 738467..738991 FT /transl_table=11 FT /locus_tag="BB0704" FT /product="putative membrane protein" FT /protein_id="CAE31204.1" FT /translation="MERLIQVLDLFSDRMGRLASMVMLPVLLVTFAVVVLRYVFGIGLI FT WLQDSYVWLTSVFFICMAGNTFLHDRHVRVELFYSRMTARKRALVNALGVLLLLWPTLF FT VTVQQSWRPIARSWRFLEASPNAGGLSFAYVHKSLVYVFCLVLFLQGLSLLLKSARTLA FT GARGVAPEASP" FT misc_feature join(738536..738604,738617..738670,738731..738799, FT 738881..738934) FT /note="4 probable transmembrane helices predicted for FT BB0704 by TMHMM2.0 at aa 24-46, 51-68, 89-111 and 139-156" FT CDS 738988..740343 FT /transl_table=11 FT /locus_tag="BB0705" FT /product="putative membrane protein" FT /protein_id="CAE31205.1" FT /translation="MSLSDVLCLLMFATVMGTMMFGFPVAFTLSGVGVAFALLGSALDV FT FEWRTMGGVMGRLYGIMSNEMLVAIPLFVFMGIMLEKSKAAERLLVTTSSLFGSLSGGL FT AFTVVMVGTLLSAATGMVAATVATLALISVPAMRRAGYQPSYMAGSICASGTLSQLIPP FT STVLILIGDMLRGVTPPDRPGGPVTVSDLFAGAVLPSVLLVVLFLGYVLYRALLRPDTC FT PPLPRSAGQRVGLRQLLVDAVAPLALIIAVLGSILAGIATPTESAAVGAMGAVLIALLY FT KALSWPVLKQVCMATGHLVAMVFTIMIGAAIFSLVFKGLGGEHLARELLSSVPGDLYGA FT LLLVLLIAFVLGFFLDSFEIIFVVIPIFGPPLLSLGVDPLLFGVLLAVTLQTSYLTPPF FT GFAIFYLQGVYKDIGAETAYRGVLPYIALQVGAVAALLSFPALATWLPTVLY" FT misc_feature 738988..739098 FT /note="Signal peptide predicted for BB0705 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.797 between residues 37 and 38" FT misc_feature join(739048..739116,739159..739227,739252..739320, FT 739330..739398,739432..739500,739558..739626, FT 739702..739770,739783..739851,739870..739938, FT 739996..740052,740065..740133,740146..740214, FT 740248..740316) FT /note="13 probable transmembrane helices predicted for FT BB0705 by TMHMM2.0 at aa 21-43, 58-80, 89-111, 115-137, FT 149-171, 191-213, 239-261, 266-288, 295-317, 337-355, FT 360-382, 387-409 and 421-443" FT CDS 740384..741508 FT /transl_table=11 FT /locus_tag="BB0706" FT /product="extracellular solute-binding protein" FT /protein_id="CAE31206.1" FT /translation="MNPNSDNKRRTLLRAATVGGLGAVLAGAAPPALAKPRVRWRMGMA FT WTRSAPGYTTPVVALADFLDKATGGAFQIEVFGAGDLVPAMQTFDAVLDGTLDCGHGYA FT SYWSGKSIAMNLVMSMPFGTTAQEKNAWLQYGGGQALADKVYERLGAKFFPLGNCGVQP FT MGWFRKEINSIDDFKGLKFRVSGLPGEVLRECGVAVVGMPLGEVLQAMQSGAVDACELT FT GPYIDTTLGIQRIAKNYYFPGWHEPEGQFDLFINLDAWNKLSPEYKELVRVGAYYANGV FT MLNELVAKNGKAFEDLRTEHGVTARLLPDDVLKRMHEITNDLLAGAYERDPLARELRDS FT LRAFLGAAAPYSEYSELLFMQARANLSGRPRLGG" FT misc_feature 740384..740485 FT /note="Signal peptide predicted for BB0706 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.952 between residues 34 and 35" FT misc_feature 740417..740485 FT /note="1 probable transmembrane helix predicted for BB0706 FT by TMHMM2.0 at aa 12-34" FT misc_feature 740507..741376 FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 9e-53" FT misc_feature 740693..740716 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 741557..743065 FT /transl_table=11 FT /locus_tag="BB0707" FT /product="probable GntR-family transcriptional regulator" FT /protein_id="CAE31207.1" FT /translation="MADRVTKAFQLATLKIRLNSADLERLDLHQRIQRALRALILDGAL FT GPGVRLPATRALAGSLGVARDTVENAYVQLHRDGFIVRRQGSGSYVSETVGARLLGAAR FT RRSMAAGEPRAEPAPEAGLSRRGRQIHDSGGVPDQRQVRAFATGLPETRTFPVDVWERL FT QRQALKDHRAGVLLHGDPQGAQPLRRAIAAYLNLERGAQVDAEQILVLSSTRQALFLCA FT QLLVDAGKPILMENPGYFGARKAFEAAEARIVPIDVDAHGLRTDLLKADRSGANCVYVT FT PSHQYPTGATLSLERRLDLTAWAGAQGRWIIEDDYDSEFHYDGLPTACVQGLDRHQRTI FT YLGTFAKTLYPGLRLGYMALPRQLVPAFTRARAIMDGHTPQITQLTLARFMDDGHYNSH FT VRAMRKLYAGRRDALLDSLGQSLRGIATAVRPPGGLQVPCLLERGWSEARTIAQAAAAG FT MRLAGLSGLYAGEDGRQGWILGYACLAAHEIEAAVLRLRRALKA" FT misc_feature 741650..741829 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 8.6e-14" FT misc_feature 742997..743017 FT /note="PS00290 Immunoglobulins and major histocompatibility FT complex proteins signature." FT CDS complement(743080..744372) FT /transl_table=11 FT /gene="glyA" FT /locus_tag="BB0708" FT /product="serine hydroxymethyltransferase" FT /EC_number="2.1.2.1" FT /protein_id="CAE31208.1" FT /translation="MNDLLPAAAAPAGARALPLRHADPEIWRAVDAERQRQMHSIELIA FT SENFVSQAVLDAQGSVMTNKYAEGYPGRRYYGGCRHVDVAERAAIERARRLFGCEYANV FT QPHSGSQANQAVYLALLAPGDRILGLDLKAGGHLTHGAHVNLSGKWFEALSYGVDPVSH FT RIDMDEVERTARRERPRLIIAGGSAYARVPDFARFRAIADATGALFVADMAHYAGLVAG FT GAFPSPVPFAHVTTTTTHKTLRGPRGGMILTDDADIARRIDAAVFPGLQGGPLMHVIAA FT KAVALGEALQPGFRAYARAVIDNARALCARLAEGGLSIVSGGTDCHLGVVDLRPWGLAG FT NAAERALEEAGITVNKNAVPGDAASPAVTSGIRVGSAACTSRGMGPAEFRQIGDLVLAV FT LGGLRDGGQAGGRDAVPARAAELSRRFPLPY" FT misc_feature complement(743185..744318) FT /note="HMMPfam hit to PF00464, DE Serine FT hydroxymethyltransferase, score 2.5e-240" FT misc_feature complement(743626..743676) FT /note="PS00096 Serine hydroxymethyltransferase FT pyridoxal-phosphate attachment site." FT CDS complement(744369..745604) FT /transl_table=11 FT /gene="benE" FT /locus_tag="BB0709" FT /product="benzoate membrane transport protein" FT /protein_id="CAE31209.1" FT /translation="MHTPTAVLRPADFLAPIVAALISVLVNYGGTFVLVFQAAELAGLS FT AAQTTSWVWAVSIGVGVTGIALSWRYREPIITAWSTPGVAFLATVMPFTPYGEVIGAYL FT AAALGFVVLGLSGAFEKLVRMIPAGIAAGLLAGILLQFGINAFGGASADPLLVIALLVS FT YALLKRYTSRFAVVGILVIGLGLLAAQQRVDFAALHLSLAAPVFEMPRFSLHAMLGVAL FT PLFVITLTGQYMPGMLVLRNDGFKTSANPILVATGLGSLVMAPFGAHTFNVAAITAAIC FT TGRDAHEDPRKRYIAGLACGVFYILVGLFGVTLATLFMVLPKTFITTLAGLALLGTIGG FT SLASAMADARTRETALITFLATAANVTLLGVGGAFWGLVAGLAAHGLIHFRQPEPAAAR FT PALLSPTSQDTR" FT misc_feature complement(744444..745574) FT /note="HMMPfam hit to PF03594, DE Benzoate membrane FT transport protein, score 3.5e-165" FT misc_feature complement(join(744471..744539,744576..744635, FT 744648..744716,744777..744845,744903..744971, FT 745038..745097,745161..745229,745248..745307, FT 745320..745379,745398..745457,745500..745568)) FT /note="11 probable transmembrane helices predicted for FT BB0709 by TMHMM2.0 at aa 13-35, 50-69, 76-95, 100-119, FT 126-148, 170-189, 212-234, 254-276, 297-319, 324-343 and FT 356-378" FT CDS 745843..746307 FT /transl_table=11 FT /locus_tag="BB0710" FT /product="probable oxidoreductase" FT /protein_id="CAE31210.1" FT /translation="MATLTINGKSQDVDAPDDMPLLWVIRDRLGMTGTKFGCGMALCGA FT CTVHLDGQPVRSCITPVAAAAGKRIVTIEAVGEDEVGRAVQQAWTEIGVPQCGYCQSGQ FT IMSATALIKSNPKPSDEDIDAAMSGNICRCGTYPRIRAAIKQVAVKGVAK" FT misc_feature 745852..746034 FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 3.4e-08" FT misc_feature 745954..745980 FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature 746056..746280 FT /note="HMMPfam hit to PF01799, DE [2Fe-2S] binding domain, FT score 6.7e-31" FT CDS 746304..748655 FT /transl_table=11 FT /locus_tag="BB0711" FT /product="putative aldehyde dehydrogenase" FT /protein_id="CAE31211.1" FT /translation="MNAFDRFAPSHAALADEPCGLAPASPARREWLRTAAALTGLVLVV FT GAGGVVRAAGEAAKEAKKYGGDGMPHGTVDDPLVFVSIAADGLVTIVAHRAEMGTGVRT FT SLPMVVADELEADWNRVRVIQAPGDEPRYGNQDTDGSRSTRHFFLPMRRVGAAARAMLE FT AAAARQWGVPVAEVAARQHEVVHEKSGRKLGYGELATAAAALPVPAEAALRLKQPAQFR FT YIGKPGARSVDIEDIVTGKTHFGIDTRLDGMLYASVARPAVLGGKVKAYKAEAALKVPG FT VVKVVELPAGPTPPVFAPLGGVAVIASDTWAALKGRQALEIEWDDGPHASYDSEAFRKT FT LSEGAGKPAKPVRNDGDAMQALAGAARRIEAEYYLPHLAHATMEPPAATARLADGKCEV FT WACVQSPYGTRENVARHLGLDIGAVTVHQTLLGGGFGRKSKSDFVVEAALLSKAMDGKP FT VKVTWSREDDLANDYFHTVSVERLEAGVDAQGKAVAWLHRTAAPTIGSTFAAGAEGQQP FT FELGMSAINIPFDIPNFRVESVPVPAHTRIGWFRSVSNIPHAFAVQSFVAEMAHALGRD FT PRDYLLELIGPPRRIAPAAMSDGWNYGESPELYPLDTGRMRHVIEVATGAAGWGRKLEA FT GRGLGVAVSYSFVTYIATVVEVEVGQDGAIAVPRVHVAVDCGPQVHPDRVRAQVEGACI FT MGLSLATRSEISFAQGRATQTNFHQYEVARMPEAPREIVVHLVEHGFDVPLGGVGEPAV FT PPFAPALCNAIFAATGKRIRALPIRDQLKA" FT misc_feature 747018..747293 FT /note="HMMPfam hit to PF01315, DE Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain, score 0.03" FT misc_feature 747297..748490 FT /note="HMMPfam hit to PF02738, DE Aldehyde oxidase and FT xanthine dehydrogenase, molybdopterin binding domain, score FT 3.2e-07" FT misc_feature 747525..747590 FT /note="Predicted helix-turn-helix motif with score 992.000, FT SD 2.57 at aa 408-429, sequence GTRENVARHLGLDIGAVTVHQT" FT CDS 748724..749674 FT /transl_table=11 FT /locus_tag="BB0712" FT /product="putative LysR-family transcriptional regulator" FT /protein_id="CAE31212.1" FT /translation="MPSPSRSPATAYKKAPSLKGLPSIRQLRAFVAVYYTGTLSAAAEA FT LSLTQPAVTILLKELEEKLGVRLFDRTTRALRRTTAALEAIAYAERVLGELDALSASMT FT DLADVRRGRLRVAATSTVAQTLLPKVVRRFLDLHPGVKLSVDDCAPAMFAEHVLSEQVD FT LGVGTLESAVPGLEQHQFLGDHLCAVATDAAFGHGRPMTWKQLSGLPVIVVQAGYGVRR FT SIERAAQQAGVELQVAFEVSLLTTALAMAASGLGVAVVPQSILAHTHYTNLVARRLVRP FT VVLRSTSVVFKEARALSPSAQAFAELLRREFSSPA" FT misc_feature 748793..748972 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 5e-19" FT misc_feature 748832..748897 FT /note="Predicted helix-turn-helix motif with score FT 1614.000, SD 4.68 at aa 37-58, sequence FT GTLSAAAEALSLTQPAVTILLK" FT misc_feature 748835..748927 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 749042..749662 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 6.8e-45" FT CDS complement(749671..750381) FT /transl_table=11 FT /locus_tag="BB0713" FT /product="putative transcriptional regulator" FT /protein_id="CAE31213.1" FT /translation="MPRYPVRPADHAQSAEGGVTAVDRALTLLTAFRVTDQTLSLSELS FT ERASLVPSTVLRLLASLMHFGFVLRRPDGRYALGPAAARLNRVYAASFNLQDVVLPALQ FT ELVGQTRESASFHVRQGAHRLVLYRVSSPQPLSDQSHAGDLLPLDRGTGGHVLMAFSDT FT PGEFYEALRLRGYMASPVSDRSPELAGISAPVFDAQGMLAGALTLTMPVHRYKDAHIPV FT LREAAARLSAALGA" FT misc_feature complement(749683..750156) FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 5.3e-09" FT misc_feature complement(750202..750267) FT /note="Predicted helix-turn-helix motif with score FT 1328.000, SD 3.71 at aa 39-60, sequence FT LSLSELSERASLVPSTVLRLLA" FT CDS 750474..751472 FT /transl_table=11 FT /gene="hmgL" FT /locus_tag="BB0714" FT /product="3-hydroxy-3-methylglutaryl-CoA lyase" FT /EC_number="4.1.3.4" FT /note="Similar to Rhodospirillum rubrum FT 3-hydroxy-3-methylglutaryl-CoA lyase HmgL SWALL:P95639 FT (EMBL:U41280) (303 aa) fasta scores: E(): 7.9e-37, 42.43% FT id in 304 aa, and to Bacillus halodurans FT hydroxymethylglutaryl-CoA lyase Bh1134 SWALL:Q9KDS7 FT (EMBL:AP001511) (303 aa) fasta scores: E(): 4e-38, 39.4% id FT in 302 aa" FT /protein_id="CAE31214.1" FT /translation="MEKILISEVGPRDGLQNVQAVMPTEAKLQWIGALAAAGLREVEVG FT SFVHPKWLPQMADADAVVPRARAIAGLTVLALVPNLKGAQRALAAGAHKITVPVSASQT FT HNMANVRMTCEQSIEAIAAICAYRDEMAGAGPRVEVEAGIASAFGCSREGAVPERWVME FT MAERLARAGVDSIGLSDSVGVAHPRQVKRMFGELLRLLGERAGGAHLHNTRGQGLANAV FT AALEAGVTTLDASQGGLGGCPYAPGATGNIVTEDLVYLLESMGVDTGIDLERLLQARAI FT LAAALPGEPLYGHLADAGVHRGFRYADPARAALAAPEGAFCPGGAQPTEAA" FT misc_feature 750507..751352 FT /note="HMMPfam hit to PF00682, DE HMGL-like, score 8.7e-45" FT CDS 751469..752653 FT /transl_table=11 FT /locus_tag="BB0715" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsp1421 or Rs03121 SWALL:Q8XQ65 (EMBL:AL646084) FT (383 aa) fasta scores: E(): 6e-80, 55.87% id in 383 aa, and FT to Rhizobium meliloti putative conserved membrane-anchored FT protein Rb0848 or Smb21182 SWALL:Q92V66 (EMBL:AL603645) FT (394 aa) fasta scores: E(): 9.4e-47, 39.58% id in 384 aa" FT /protein_id="CAE31215.1" FT /translation="MNTADAMLPLQGLRVIEMTHMVMGPTCGLVLADLGAEVIKVEPPG FT AAERPGEHTRYLKGAGAGFFAACNRNKQSVILDLDTASGRETLYELAAGADVFLENFRP FT GALAERGLGYEALSARNPGLVYCSLKGFLDGPYAERTALDEVAQMMSGLAYMTGPVGQP FT LRAGAPVNDMMGGMFGAIAVMAALRQRERSGRGQHVVSGLFENAAWLVSTHMLQQAITG FT VEPPPMSAGRRAWGVYDVFQSSDGKQIFIGVVTERQWQRFTEALGEPELRDPAYGDNNA FT RAQARPTLIPLVGRLLARRTLDELQDLCTRAGLPFAPIARPWDLFDDPHLNAAQGLLPI FT TLTDGRPAKVPGLPIQFDGRRLGVRRDVPRPGEHNEAVLSTLTGTAGRNQEEKQ" FT misc_feature 751691..752254 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 2.3e-47" FT CDS 752650..753318 FT /transl_table=11 FT /locus_tag="BB0716" FT /product="putative isochorismatase" FT /note="Similar to Caulobacter crescentus isochorismatase FT family protein Cc1170 SWALL:Q9A924 (EMBL:AE005795) (209 aa) FT fasta scores: E(): 5.4e-17, 35.54% id in 211 aa, and to FT Thermoplasma volcanium isochorismatase Tv0543 or Tvg0534221 FT SWALL:Q97BB4 (EMBL:AP000992) (208 aa) fasta scores: E(): FT 2.1e-10, 24.88% id in 209 aa" FT /protein_id="CAE31216.1" FT /translation="MKLINGVEVRDTLEELIAPAHTALVVVDVQNDFCHPDGHFARHGK FT NIDTIAGMLPALVPFVNAAQDMGIFTVFVQQLTLPHGRSDSPAWLRLKCRDGKSPEYTM FT VGSWGAQLVDGLQPRAGDVMVQKFRPDAFVRTPLDGILRAQGIESLVIVGTTTEGCVES FT TVRGASYHDYYVIPVTDLITGPIAQLHANSLAFMRARYPAAESAQVLQTWRAARGAAAA FT " FT misc_feature 752698..753285 FT /note="HMMPfam hit to PF00857, DE Isochorismatase family, FT score 3.7e-14" FT CDS 753332..754312 FT /transl_table=11 FT /locus_tag="BB0717" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 8e-34, 39.48% id in 309 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 1.5e-35, 38.15% FT id in 304 aa" FT /protein_id="CAE31217.1" FT /translation="MTVSHVLRVAGRALLAACLLAAPAVQAAGYPDRPVRLLVGFAPGG FT PTDLAARLVAKHLGADLGQAFIVENRAGAGGNIATKDAAGATPDGYTGLVAGINITINP FT WMTADMHVDSRKDLLPVRIVAIAPTILVVRNDFPARDFQEFLREVRKHPDTYNSAAPGS FT SPLLATELFSQQTGTRITPVPYKGASPAMIDLIAGHVDLSFATLGSVLPHIKSGKVRAL FT ALAAPERDAQLPDVPTFAELGMQDFRFDAWAGVLMPAGTPPAVIDTLARSLDKLAGSAE FT FEAQVLELGMKPVVQDSPSAFARTIDTELGLYKTLAQSVRGKIAQ" FT misc_feature 753332..753412 FT /note="Signal peptide predicted for BB0717 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 27 and 28" FT misc_feature 753479..754297 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.2e-73" FT CDS 754309..755286 FT /transl_table=11 FT /gene="bcpA" FT /locus_tag="BB0718" FT /product="carboxyvinyl-carboxyphosphonate phosphorylmutase" FT /EC_number="2.7.8.23" FT /note="Similar to Streptomyces hygroscopicus FT carboxyvinyl-carboxyphosphonate phosphorylmutase BcpA FT SWALL:CPPM_STRHY (SWALL:P11435) (294 aa) fasta scores: E(): FT 2.5e-40, 44.75% id in 286 aa, and to Anabaena sp. FT carboxyphosphonoenolpyruvate phosphonomutase All1863 FT SWALL:Q8YVW0 (EMBL:AP003587) (287 aa) fasta scores: E(): FT 1.4e-40, 43.4% id in 288 aa" FT /protein_id="CAE31218.1" FT /translation="MTRVAAGMRAATIHQKYGVLLITSAHGKDYPLGLRQAQGRNAALR FT RLLAAPELLVAPGAYDCVGARLVEQAGFAAIYLTGSGMSMSALGAPDVGLMSFSEILDR FT AARVADMVSVPVIVDADTGYGGPLNLIRTVRAFERAGLSGIQIEDQAWPKKCGHEGGRN FT LVSSAEMQGRIKAAVDARIDPDLVIIARTDARSDHGLDAALERAARYAEAGADVIFVES FT PENEQELAAIAAAVKAPVLANMVEGGRTPILPASRLAQLGFAMAIYPNALTRCFAHAGL FT EMLRGLAADGSTAGSAARMLSHRQLWSLFEYEKWIATEQRLGGA" FT CDS 755365..756345 FT /transl_table=11 FT /locus_tag="BB0719" FT /product="putative ABC transporter periplasmic FT solute-binding protein" FT /note="Similar to Rhizobium meliloti putative ABC FT transporter periplasmic solute-binding protein Rb0039 or FT Smb20036 SWALL:Q92XC3 (EMBL:AL603642) (338 aa) fasta FT scores: E(): 3.3e-10, 24.85% id in 338 aa, and to FT Fusobacterium nucleatum N-acetylneuraminate-binding protein FT Fn1472 SWALL:Q8RDN9 (EMBL:AE010653) (327 aa) fasta scores: FT E(): 5e-09, 25% id in 332 aa" FT /protein_id="CAE31219.1" FT /translation="MKKQLIGAVVATAMFAAPLAATAATWMAYTFGPSENLANVQGMKR FT VMEDIEKNTGGEVKFRLRLAGSLPIQATDITQAVGNGTVRFADDGFYLGNVRIAGILRL FT PMLLRSQEDFDKAYAIMKPYVERDFGKQGVVVLGHFSFPHQVIFSARKLESLADIKGQK FT LRVSSPEQAAFVQRAGGIPVTLGGAEVPSALSAGTIDGALTASAGGGKIWGDMLKYNLR FT LPVNYFDGFYLVNKKAFEALSPEMQAKMRESVARQAPGTTAQIAKEEGEVTDALRQKGM FT VIVPSTPAMEQAATDLVSGYWEDWAREQGPEAVQALAEVRKALGR" FT misc_feature 755365..755433 FT /note="Signal peptide predicted for BB0719 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.887 between residues 23 and 24" FT misc_feature 755377..755445 FT /note="1 probable transmembrane helix predicted for BB0719 FT by TMHMM2.0 at aa 5-27" FT misc_feature 755443..756291 FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 4.5e-09" FT CDS 756364..756888 FT /transl_table=11 FT /locus_tag="BB0720" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Rb0359 or Smb20373 SWALL:Q92WI0 (EMBL:AL603643) (155 aa) FT fasta scores: E(): 0.00049, 31.57% id in 152 aa, and to FT Halomonas elongata small transmembrane protein TeaB FT SWALL:Q8VPB2 (EMBL:AY061646) (201 aa) fasta scores: E(): FT 0.00084, 26.7% id in 161 aa" FT /protein_id="CAE31220.1" FT /translation="MNKPQSPARPGGLPLVSGLMRLQRLLSELIVLAMTLLIAAEVICR FT ALFGFSLMIVEEVGGYLLVALVFLGMGVALHDGVLFRAEFVINALGERARLILQCVFDA FT VCLAGMAMLSWQLGVQVYESYVRGVRAATTLATPLYLPQLFMVAGALSTALVLLSQLLE FT GMTRLRSPHHE" FT misc_feature join(756448..756516,756544..756612,756649..756717, FT 756781..756849) FT /note="4 probable transmembrane helices predicted for FT BB0720 by TMHMM2.0 at aa 29-51, 61-83, 96-118 and 140-162" FT CDS 756890..758182 FT /transl_table=11 FT /locus_tag="BB0721" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens putative FT transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677) FT (416 aa) fasta scores: E(): 4e-51, 40.97% id in 410 aa, and FT to Pasteurella multocida hypothetical protein Pm1527 FT SWALL:Q9CKS9 (EMBL:AE006189) (442 aa) fasta scores: E(): FT 6.5e-44, 35.51% id in 428 aa" FT /protein_id="CAE31221.1" FT /translation="MTQFVLVIAVFLVLLLAGMWIPFAIFLSASLYIVLYAGWDGLSGF FT GLSSWGSMNSFTLTAIPLFILMAEIMLESGLSQRVYRGLARIVRRLPGGLLQTNIAGCA FT AFSAISGSSVATAAAIGSVALPQLEARGYCLKLSTGTLAAGGTLGILIPPSIAMIIYGT FT FTETSIAKLFMAGVVPGLALVVLFMCYVAVRCLVNPRLAPPPEQDTPPPLRQTLADLLP FT FGALIVGVMGSLYAGLATPTEAAGVGACLAALIARIWGDCSIATLRRSLAKTVKACGAI FT LFIVYAAFLFSYAIAMTGLTDSLTDLLDAWQLSRLELLLAVVLLYTVLGFLMDSIGMMV FT ITVPILHPILASYGVDPIWFGVLLVVLIELGQITPPVGMNLFVVKSVSPSARLKDVVVG FT SLPFCLLMYVLIAWLIYSPQLALWFPGRMTG" FT misc_feature 756890..757069 FT /note="Signal peptide predicted for BB0721 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.952) with cleavage site FT probability 0.208 between residues 63 and 64" FT misc_feature join(756899..756994,757052..757120,757181..757249, FT 757307..757375,757412..757480,757538..757606, FT 757721..757789,757847..757915,757934..758002, FT 758075..758143) FT /note="10 probable transmembrane helices predicted for FT BB0721 by TMHMM2.0 at aa 7-38, 58-80, 101-123, 143-165, FT 178-200, 220-242, 281-303, 323-345, 352-374 and 399-421" FT CDS 758187..759104 FT /transl_table=11 FT /locus_tag="BB0722" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1742 SWALL:Q9PCN6 (EMBL:AE003997) (356 aa) fasta scores: FT E(): 3.7e-15, 29.96% id in 307 aa, and to Xanthomonas FT axonopodis gluconolactonase Xac0887 SWALL:AAM35775 FT (EMBL:AE011720) (286 aa) fasta scores: E(): 7.3e-15, 29.5% FT id in 261 aa" FT /protein_id="CAE31222.1" FT /translation="MFNPPSLIAAEVFCSVPERYRKRDQSAEWLRVQKRGATAHSFLEG FT PAFDRAGNLYVTDIPYGRVFRISPAGDFELVAEYDGEPNGLKVHRDGRIFIADHKHGIM FT LLDPASGAVVPYLDRPRLERFKGVNDLFFAPNGDLYFTDQGQSGLQDPSGRVYRYSAQG FT QLSCLMDNIPSPNGIVLAPDGGSLLIAVTRANSVWRAPLLADGGVSKVAAFLNLSGGFG FT PDGLALDQAGGLAVCHPGLGSVWLFDADGEPLARIRSQTGKVITNCAFGGPQRQWLYMT FT EADSGLVLRARMPAPGIDLLEGQP" FT misc_feature 758283..759098 FT /note="HMMPfam hit to PF03758, DE Senescence marker FT protein-30 (SMP-30), score 8.3e-07" FT CDS 759101..759421 FT /transl_table=11 FT /locus_tag="BB0723" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli O157:H7 hypothetical FT protein Z0890 or Ecs0759 SWALL:Q8X998 (EMBL:AE005251) (105 FT aa) fasta scores: E(): 7.3e-15, 46.46% id in 99 aa" FT /protein_id="CAE31223.1" FT /translation="MKPSTPTRLVDVAKVIRSKNAGPLQTTLDLMFATAEHYRLARDSE FT ALSAASVARLYGVAPDWVRVIPYEAAHAIKIVLDRPLPAGQPGDRDVYGAQQHYPLLDL FT TL" FT CDS 759418..760839 FT /transl_table=11 FT /locus_tag="BB0724" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli O157:H7 hypothetical FT protein Z0891 or Ecs0760 SWALL:Q8X991 (EMBL:AE005251) (456 FT aa) fasta scores: E(): 5.5e-59, 37.96% id in 453 aa" FT /protein_id="CAE31224.1" FT /translation="MTTAVQSLLAAGLKPGQPLRALAASGQLGYGIPTPAFHAGMARDP FT HFVGCDMGSIDVGPYYLGSGRLATSEAITRRDLTLVLRGARERNVPLLIGTAGTSGAAP FT HLSRTLEMLRDIARAERLDFKMAVIGADMPRDLVARQLQAGRVHPLGRIPPLDEAAVRD FT AAHIVGQMGNEAFIRALACEPDVIVAGRACDTAVFASIPVMLGYDTALAVHMAKIIECT FT SICCDPGGRDAILGTLERDSFTLESMNPERAATPVSVAAHSLYEQADPMTVQEPDGTLD FT VGQARFEAVDARRTRVSGATWREASQKTVKIEGAQWVAERAVVCAGSCDPRVIANLAAI FT EAGVRKNVAAVLEGSVADYELVFRVYGAGATQVYPGARIAAGAEVFFLLECLAATADAA FT LAAATVAKQYLLHHGFPGRLSTGGNIAFPFTPPELRAGTAYRYSVYHVMECDDLPGLFP FT VEVEQVRGGVQVAGG" FT misc_feature 759418..759486 FT /note="Signal peptide predicted for BB0724 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.646) with cleavage site FT probability 0.637 between residues 23 and 24" FT CDS complement(760870..761646) FT /transl_table=11 FT /locus_tag="BB0725" FT /product="putative transcriptional regulator" FT /note="Similar to Agrobacterium tumefaciens putative FT transcriptional regulator SWALL:Q9F7C7 (EMBL:AF282677) (260 FT aa) fasta scores: E(): 1.7e-15, 30.73% id in 257 aa, and to FT Streptomyces coelicolor putative IclR-family regulatory FT protein Sco0574 or Sc5g5.06 SWALL:Q93RZ6 (EMBL:AL591823) FT (277 aa) fasta scores: E(): 1.5e-15, 31.71% id in 227 aa" FT /protein_id="CAE31225.1" FT /translation="MKDSDSAELEEKPEKGGDSVRAVNRALDILLAFSRQDAELTASQL FT LQRVGLSRPTLYRLLYTLEAKGFITASGDPQRFRLGPAVARLSHIWTETQDLAALAEPL FT LRELWNETQETVAIFVEQGEMRLCLAELPSPQPLSFKRGVGYTERIAMGATGRAILAFK FT EDALDHLEQYTRGLPLDPARFRRELKQTRQLGYATSRDELIVGAAAVAAPFFNGDRVAG FT SIGLFGPATRLDEAAVAALGPRVVALARKLSQALGG" FT misc_feature complement(760882..761415) FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 6.1e-22" FT misc_feature complement(761464..761529) FT /note="Predicted helix-turn-helix motif with score FT 1719.000, SD 5.04 at aa 42-63, sequence FT LTASQLLQRVGLSRPTLYRLLY" FT CDS 761810..762784 FT /transl_table=11 FT /locus_tag="BB0726" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 1.4e-36, 36.42% id in 324 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 8.2e-30, 35.22% FT id in 335 aa" FT /protein_id="CAE31226.1" FT /translation="MRKSFLSGAAALLALACALGAPGARAAYPERPVSVVVGFAPGGTN FT DILARLISAKLQARLKQPFVVENRAGANSIIAAEYVARAQPDGYTIFVASSGALTINPA FT IYTKLGYDPQQAFKPVAMLGVFPLVVVTNAESKAERLADLKTLAAQRSDHTLNHGVGSS FT TFQLAAEYYARQTGLSLMHISYRGTGPLLSALLANEVDVGFADVAAVVSQIGAGKLKPL FT AVTTAERSSVLPDVPTIAEAGVPGYDVPVWTGLVVPKDTPDEVVRALQGALKEILADPD FT TLAQYRPLGMEPGNVDGAALQQRIGDDIARWTKVAREADIKAN" FT misc_feature 761810..761887 FT /note="Signal peptide predicted for BB0726 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.720 between residues 26 and 27" FT misc_feature 761828..761860 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 761951..762772 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 6.7e-78" FT CDS 762806..763807 FT /transl_table=11 FT /locus_tag="BB0727" FT /product="electron transfer component of a dioxygenase FT system" FT /EC_number="1.18.1.3" FT /note="Similar to Pseudomonas putida toluate FT 1,2-dioxygenase electron transfer component [includes: FT ferredoxin; ferredoxin--NAD(+) reductase] xylZ FT SWALL:XYLZ_PSEPU (SWALL:P23101) (336 aa) fasta scores: E(): FT 3.2e-31, 34.25% id in 327 aa, and to Burkholderia sp. NK8 FT electron transfer component of chlorobenzoate FT 1,2-dioxygenase CbeC SWALL:Q9AQS2 (EMBL:AB024746) (342 aa) FT fasta scores: E(): 2.1e-31, 35.41% id in 336 aa" FT /protein_id="CAE31227.1" FT /translation="MDTVPITLLFSDGAARRIDARCGASIVQAAGDAGLGLLTDCSNGQ FT CGTCTATLVSGAIELGDYDRAVLPDGDRADGAILTCVSRITGPCVVELPYEVDEAQAQP FT LPPMAGTVVALEQIAQETMLLEVEVAEAVGFQPGQYVRIRPEGLDAWRSYSMACGSGER FT RLRFYVRLVEGGVFSTWLTQAARVGASVALSEPHGSFFLRSEARPRLFIAGGTGLAPFL FT SMLQAIAADPAQQEIPTTLLVGARSGAHLFALDQLAALRERWPALRVRLAAESEPRGEC FT HTGYATDLLAGLGLDPATRVYLCGPPAMVEAGRGAAEAVGLARRDMLCERFN" FT misc_feature 762830..763066 FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 1.1e-08" FT misc_feature 762926..762952 FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature 763130..763411 FT /note="HMMPfam hit to PF00970, DE Oxidoreductase FT FAD-binding domain, score 1.4e-17" FT misc_feature 763421..763753 FT /note="HMMPfam hit to PF00175, DE Oxidoreductase FT NAD-binding domain, score 1.8e-23" FT CDS 763822..765186 FT /transl_table=11 FT /gene="hcaE" FT /locus_tag="BB0728" FT /product="hydroxylating alpha subunit of a dioxygenase FT system" FT /note="Similar to Escherichia coli and Escherichia coli FT O157:H7 3-phenylpropionate dioxygenase alpha subunit HcaE FT or PhdC1 or HcaA or HcaA1 or DigA or b2538 or z3809 or FT ecs3404 SWALL:HCAE_ECOLI (SWALL:Q47139) (453 aa) fasta FT scores: E(): 3.8e-63, 38.2% id in 445 aa, and to FT Sphingomonas sp putative ring-hydroxylating dioxygenase, FT large subunit SWALL:O86913 (EMBL:AJ223220) (416 aa) fasta FT scores: E(): 4.4e-79, 48.44% id in 386 aa" FT /protein_id="CAE31228.1" FT /translation="MPNMQPTHYDRMVDLKQGTISREIFSSKEIFEEELEKIFTRAWLF FT VGHESQIPNPGDFYTSRMGAESVILTRDKKGKVHVFLNSCRHRGMKVCQYDHGNTQLFT FT CPYHSWSYTTEGKLFGVPQYKAIYDGNLCKEDWSLIEVPKLETYKGTVWASWDKNAPDF FT LTYLGDARTHLDLALDHRDGREGGSEVLVGVHKWIIPCNWKFAAENFLGDTYHNVSHRS FT VDLIGIGPSAEVGVKGRRDNELEYARHLWVNFPAGHGVHSAIVPENAPFVDTFQNNPII FT AEYFRHCHEERKRRLGEERSRLVPFVGTIYPNVSFHGKQPRNLCIWHPHGPEATEAWRF FT FLVDADAPQEVKDFLRTYYMRYSGPAGMTEQDDMENWNYATAGSRGVIAKRYPYNYQQS FT LGAVTNAGPVPGNVSLQVSEENPRQYYRRWRDYMNGADWDTLLGRNDSGPASFAQ" FT misc_feature 763945..764250 FT /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain, FT score 7.7e-30" FT misc_feature 764074..764145 FT /note="PS00570 Bacterial ring hydroxylating dioxygenases FT alpha-subunit signature." FT misc_feature 764308..765135 FT /note="HMMPfam hit to PF00848, DE Ring hydroxylating alpha FT subunit (catalytic domain), score 6.8e-52" FT CDS 765183..766022 FT /transl_table=11 FT /locus_tag="BB0729" FT /product="putative short chain dehydrogenase" FT /note="Similar to Rhizobium etli putative short chain type FT dehydrogenase reductase Yp008 SWALL:AAM54803 (EMBL:U80928) FT (280 aa) fasta scores: E(): 1.1e-17, 37.27% id in 279 aa, FT and to Ralstonia solanacearum probable toluenesulfonate FT zinc-independent alcohol dehydrogenase oxidoreductase FT protein TsaC or rsc2351 or rs01195 SWALL:Q8XWW9 FT (EMBL:AL646069) (252 aa) fasta scores: E(): 4.5e-18, 36.82% FT id in 258 aa" FT /protein_id="CAE31229.1" FT /translation="MSAQGNGPVTIVTGGTFGLGQAITLSLARRGHRVLAFGLESAQAS FT STAAGFDGLRAALAEAGLQERVAVMAADVADEADTGRVVDEALRRYGRVDGLVNNAAIG FT PLGTVLSTEPAMADRILAVNVKGVYLMSRAVIPHMRAQGGGAIVNIGSGAGYGKPDMAI FT YAASKGAVLALSSAMAYDHFHDRIRVNVAIPGGGGIVSGMSVGRVGGDEALFRRRQAAG FT SAAGRPASGEDLANAVAFLLSGEAEAISGTVVDVGCFANQGGPVPARPSTNRGHSHD" FT misc_feature 765198..765974 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 1.1e-45" FT misc_feature 765681..765728 FT /note="PS00038 Myc-type, 'helix-loop-helix' dimerization FT domain signature." FT CDS 766015..766599 FT /transl_table=11 FT /locus_tag="BB0730" FT /product="hydroxylating beta subunit of a dioxygenase FT system" FT /EC_number="1.14.12.3" FT /note="Similar to Pseudomonas putida benzene FT 1,2-dioxygenase beta subunit bedc2 SWALL:BED2_PSEPU FT (SWALL:Q07945) (187 aa) fasta scores: E(): 1.9e-17, 36.99% FT id in 173 aa, and to Rhodococcus erythropolis FT isopropylbenzene 2,3-dioxygenase ipba2 SWALL:P72257 FT (EMBL:U24277) (187 aa) fasta scores: E(): 2.1e-18, 36.31% FT id in 190 aa" FT /protein_id="CAE31230.1" FT /translation="MTETLACADSPAIAPLARDARYYELKREIEEHMYDECELLDTRQF FT SRWLDTLAEDLVYFMPMNFNVKFGRHAQDEHTRVEKDMSWFNEGKWTLTKRAEQIMTGV FT HWAEEPLSRLCRVVSNVQLTAIAEGADGALEVDARSRFVMYQNRCEYEEYYFTGRRYDR FT LRRVGDGWQLVRREIHLPQNVLLAKNLTMFF" FT misc_feature 766117..766578 FT /note="HMMPfam hit to PF00866, DE Ring hydroxylating beta FT subunit, score 4.5e-33" FT CDS 766609..766797 FT /transl_table=11 FT /locus_tag="BB0731" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE31231.1" FT /translation="MLNLMQLQPGQLLALRDGRKGEVVENMGDGIWVQVRWLDQEGRPL FT DGGEDELVHCEEVAGLA" FT CDS 766922..768568 FT /transl_table=11 FT /gene="cadA" FT /locus_tag="BB0732" FT /product="FAD-monooxygenase" FT /note="Similar to Pseudomonas putida FAD-monooxygenase CadA FT SWALL:Q93AG2 (EMBL:AF421356) (553 aa) fasta scores: E(): FT 1e-121, 56.37% id in 541 aa, and to Nocardia FT aerocolonigenes putative monooxygenase SWALL:CAC93716 FT (EMBL:AJ414559) (529 aa) fasta scores: E(): 3.8e-36, 34.18% FT id in 550 aa" FT /protein_id="CAE31232.1" FT /translation="MGSTEKHPVIVVGAGPVGLTVAMDMASRGVSVLVLERRHRGEAPS FT VKCNHVSARSMEVFRRLGVAQAVRAAGLPDEYPHDVAYRTSATGIELTRIPIPGRAGRQ FT RKDTGPDTNWPTMEPPHRINQIYLEPILFEHAAGMERIAIRNRVEVTEIEQDDEGVTVH FT ARDLDSGESLRMRADYLVGCDGGRSAIRTAIGAKLVGDAVIQRVQSSYIRAPQLRQLFK FT HEPAWATFTLNPARCGNMYAIDGKELWLVHNYLRDEEPDFESVDRDLCIRRILGVGEDF FT EYELISKEDWYGRRLVADRFRDRRVFICGDAAHLWVPYAGYGMNAGIADAANLAWLLAA FT TVNGWADARILDAYVSERHPITSQVSYFVMDHAHAMATERRIVPENIEAQDEAGAAVRA FT QVGERAYALNVQQYCCAGLNFGYFYDQSPLIAYDGESQPAYTMGDFTPSTVPGCRTPHF FT QLADGASLYDAMGDGYTVLRLKAGVDVQPLVEAAARRGMPLRVLDLEGEDAPPAYRHAL FT VISRPDQHVAWRGDTLPADPQALVDQLRGAA" FT misc_feature 766946..767359 FT /note="HMMPfam hit to PF01494, DE FAD binding domain, score FT 2.3e-14" FT misc_feature 767447..768031 FT /note="HMMPfam hit to PF01360, DE Monooxygenase, score FT 8.7e-32" FT CDS 768609..769574 FT /transl_table=11 FT /locus_tag="BB0733" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein Atu4727 or Agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) FT (329 aa) fasta scores: E(): 1.3e-46, 46.68% id in 317 aa, FT and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 6.3e-37, 37.53% FT id in 325 aa" FT /protein_id="CAE31233.1" FT /translation="MKLLSHFFKAAAILAVSGAACAADAPMTLVVPYAPGGATDILART FT VAQHMGDELKRSIVVENRPGGGTIIGAQLVSRAAPDSGMLLMATSTTLAINRTMYKSLP FT YDPQAFAPVGLVAEVPLVVVVNPSVKADSLADLVALAKANPGTLTFGSAGSGSPQHLSA FT EMFRAATGASMTHVPYKGTSAALNDLLGGQISMMFADLAPVLAHIRSGKLRALAVTSAQ FT RQPNLPDTPTVRESQVPGTADYEAVAWQSLVAPPGTPAETVQAYNAALVKVLGEADVKA FT RFEANGVSVRTSTPQELADYIRTEGDRWAKVVKASGASAD" FT misc_feature 768609..768674 FT /note="Signal peptide predicted for BB0733 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.795 between residues 22 and 23" FT misc_feature 768639..768671 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 768732..769562 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.1e-101" FT CDS 769619..770293 FT /transl_table=11 FT /gene="hpaG" FT /locus_tag="BB0734" FT /product="putative fumarylacetoacetate hydrolase family FT protein" FT /EC_number="5.3.3.-" FT /note="Similar to the N-terminal region of Escherichia coli FT 4-hydroxyphenylacetate degradation bifunctional FT isomerase/decarboxylase HpaG SWALL:HPAG_ECOLI FT (SWALL:Q46978) (429 aa) fasta scores: E(): 2.9e-20, 37.25% FT id in 204 aa, and similar to Pseudomonas aeruginosa FT hypothetical protein Pa4121 SWALL:Q9HWR0 (EMBL:AE004828) FT (219 aa) fasta scores: E(): 7.1e-22, 37.25% id in 204 aa" FT /protein_id="CAE31234.1" FT /translation="MSDPLSQLYDDPPYRLSGVVYGALLNQREALDRLGEAVNQPPYKA FT PPKGPVLYMKPRNTLARDGQAIALAADVPAMRLGATLGLVLGRTACRVDAAEALDYVAG FT VVLVADLTVPHDSFYRPSARFVARDRSCFIGPRIVPLAEAGDPDAMVIHVTVDGKPAQA FT ASMGGRVRPAARLLADVTDFMTLSPGDILLLGTCVDQPQVGRGQAFALAAEGMGELHGE FT TQ" FT misc_feature 769640..769660 FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT misc_feature 769748..770242 FT /note="HMMPfam hit to PF01557, DE Fumarylacetoacetate (FAA) FT hydrolase family, score 3.6e-09" FT CDS 770290..771057 FT /transl_table=11 FT /locus_tag="BB0735" FT /product="putative fumarylacetoacetate hydrolase family FT protein" FT /EC_number="5.3.3.-" FT /note="Similar to the N-terminal region of Escherichia coli FT 4-hydroxyphenylacetate degradation bifunctional FT isomerase/decarboxylase HpaG SWALL:HPAG_ECOLI FT (SWALL:Q46978) (429 aa) fasta scores: E(): 1.3e-42, 57.82% FT id in 211 aa, and to Pseudomonas aeruginosa hypothetical FT protein Pa4122 SWALL:Q9HWQ9 (EMBL:AE004828) (259 aa) fasta FT scores: E(): 9.6e-58, 58.98% id in 256 aa" FT /protein_id="CAE31235.1" FT /translation="MKRARVAYGGAIHSATPHEQGLLLADGRVVAEDAVVWLPPVEVGT FT LIVLGLNYADHVKELSKELTVTTRDEPLVFFKGPGAVVGHRAQTRRPRDATYMHYECEL FT AVVIGKPAKDVKAADAMAHVAGYTVCNDYAIRDYLENWYRPNLRVKNRDTCTVMGPWLV FT DAADVADPHALALRTLVNGKVTQQGSTADMINDIAALIEYLSGFMTLMPGDVILTGTPD FT GVVNVEEGDEVVCEIEGIGALANTIVGDAVFGR" FT misc_feature 770479..770976 FT /note="HMMPfam hit to PF01557, DE Fumarylacetoacetate (FAA) FT hydrolase family, score 7.6e-69" FT CDS 771067..772536 FT /transl_table=11 FT /gene="hpaE" FT /locus_tag="BB0736" FT /product="5-carboxymethyl-2-hydroxymuconate semialdehyde FT dehydrogenase" FT /EC_number="1.2.1.-" FT /note="Similar to Escherichia coli FT 5-carboxymethyl-2-hydroxymuconate semialdehyde FT dehydrogenase HpaE SWALL:Q46979 (EMBL:Z37980) (488 aa) FT fasta scores: E(): 7.9e-133, 67.82% id in 488 aa, and to FT Salmonella typhimurium 4-hydroxyphenylacetate catabolism FT HpaE or Stm1102 SWALL:Q8ZQ48 (EMBL:AE008747) (488 aa) fasta FT scores: E(): 2.5e-133, 68.03% id in 488 aa" FT /protein_id="CAE31236.1" FT /translation="MRIEHLIDGKAVAGKQYFETINPATQETLAEVAAGGEAEVHAAVA FT AAKAAFPKWAGLPAAERARLVRKLGDLIAAHVPEISRTETNDCGQTIAQTGKQLVPRAA FT DNFYYFAEMCTRVDGHTYPTPTHLNYTLYHPVGVCALISPWNVPFMTATWKVAPCLAFG FT NTAVLKMSELSPLTAARLGELALEAGIPPGVLNLVHGYGRDAGEPLVAHPDVRAVSFTG FT STATGNRIVQAAGLKKFSMELGGKSPFVIFDDADLDRALDAAIFMIFSNNGQRCTAGSR FT ILVQQSIYADFTQKFVERARRIRVGDPLDEGTIVGPLISPAHLAKVRGYIELGSKEGAT FT MLCGGLDRPSYAPELDARVRDGNFVWPTVFADVDNRMKIAQDEIFGPVACLIPFRDEAH FT AIELANDIEYGLSSYVWTESVGRAHRVAAAIEAGMCFVNSQNVRDLRQPFGGTKASGTG FT REGGTWSYEVFCEPKNVAVSLGNHHIPHWGA" FT misc_feature 771094..772503 FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 6.1e-194" FT misc_feature 771787..771810 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT misc_feature 771871..771906 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS 772533..773402 FT /transl_table=11 FT /gene="hpaD" FT /locus_tag="BB0737" FT /product="homoprotocatechuate 2,3-dioxygenase" FT /EC_number="1.13.11.15" FT /note="Similar to Pseudomonas sp. DJ-12 homoprotocatechuate FT 2,3-dioxygenase HpaD SWALL:Q93A27 (EMBL:AF433158) (287 aa) FT fasta scores: E(): 1.8e-101, 80.35% id in 285 aa, and to FT Escherichia coli 3,4-dihydroxyphenylacetate 2,3-dioxygenase FT HpaD SWALL:Q46980 (EMBL:Z37980) (282 aa) fasta scores: E(): FT 8.1e-78, 66.54% id in 281 aa" FT /protein_id="CAE31237.1" FT /translation="MTMGKLALAAKITHVPSMYLSELDGPNKGCRQAAIDGHKEISRRC FT RELGVDTIVVFDVHWLVNSDYHINCAPRFSGCYTSNELPHFIKNMDYEYPGNPALGHLI FT ADVANEMGVATRAHSETSLGMEYGTLVPMRYMNEDQHFKVVSVSGWCVWHDLATSVRFG FT QAVRKAIEERYDGTVAVLASGSLSHHFAENGTAPEYMHKVWDPFLEQVDRRVVELWEQG FT DWQTFCPMLKLYAEQCWGEGGMHDTAMLLGALGWTDYDQPVEVVTPYFGSSGTGQINAI FT FPVSPLKV" FT misc_feature 772572..773372 FT /note="HMMPfam hit to PF02900, DE Catalytic LigB subunit of FT aromatic ring-opening dioxygenase, score 1.2e-55" FT CDS 773404..773841 FT /transl_table=11 FT /gene="hpaF" FT /locus_tag="BB0738" FT /product="5-carboxymethyl-2-hydroxymuconate FT delta-isomerase" FT /EC_number="5.3.3.10" FT /note="Similar to Escherichia coli FT 5-carboxymethyl-2-hydroxymuconate delta-isomerase HpaF FT SWALL:Q46981 (EMBL:Z37980) (125 aa) fasta scores: E(): FT 0.008, 25.71% id in 140 aa, and to Deinococcus radiodurans FT 5-carboxymethyl-2-hydroxymuconate isomerase Dra0227 FT SWALL:Q9RYT1 (EMBL:AE001863) (128 aa) fasta scores: E(): FT 0.00078, 31.69% id in 142 aa" FT /protein_id="CAE31238.1" FT /translation="MPHLVILYSGNLDRDLDMGAVCRGLADAMLTVRDDEGRQVFPTGG FT TRVLAYPAPHYAIADGGQAGRDAGESGDYGFAYLNLRMGRGRSEAVQRRAGETIAQAAR FT ALLAPLLQQRRVGLTFQIDVGAEVYDAKFGNLHALFQKGEK" FT misc_feature 773407..773823 FT /note="HMMPfam hit to PF02962, DE FT 5-carboxymethyl-2-hydroxymuconate isomerase, score 6e-09" FT CDS 773841..774656 FT /transl_table=11 FT /gene="hpcG" FT /locus_tag="BB0739" FT /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase" FT /EC_number="4.2.1.-" FT /note="Similar to Rhodococcus sp FT 2-oxo-hepta-3-ene-1,7-dioic acid hydratase BphE or EtbE FT SWALL:O05150 (EMBL:D78322) (267 aa) fasta scores: E(): FT 3.6e-61, 61.11% id in 270 aa, and to Escherichia coli FT 2-oxo-hepta-3-ene-1,7-dioic acid hydratase HpcG FT SWALL:HPCG_ECOLI (SWALL:P42270) (264 aa) fasta scores: E(): FT 2e-52, 56.27% id in 263 aa" FT /protein_id="CAE31239.1" FT /translation="MLSEALIGELAAQLYESERTRVQVEHFSKRHPEITIEDGYRISRA FT WVAMQRADGRRVIGHKIGLTSRAMQQASQIDEPDYGTLLDHMLYTCQPGQELAIPFERF FT IAPRVEVELAFVLKAPLRGPEVTVEQVLAATEYVTPAIEIIDSRIEQFDRHTRAMRKVF FT DTISDNAANAGVVTGAQRVSPQALDLPWCGAVLRQNGVVEETGLAAGVQGHPAIGVAWL FT ANKLAPWGETLEPGQLVLAGSFTRPVAARKGDAFEADYGPLGAMRFRFV" FT misc_feature 773850..774536 FT /note="HMMPfam hit to PF01689, DE Hydratase/decarboxylase, FT score 1e-111" FT CDS 774659..775468 FT /transl_table=11 FT /gene="hpaI" FT /gene_synonym="hpcH" FT /locus_tag="BB0740" FT /product="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase" FT /EC_number="4.1.2.-" FT /note="Similar to Escherichia coli FT 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or FT HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: FT E(): 4.3e-60, 64.88% id in 262 aa, and to Deinococcus FT radiodurans 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase FT Dra0291 SWALL:Q9RYM1 (EMBL:AE001863) (277 aa) fasta scores: FT E(): 1.1e-65, 67.39% id in 273 aa" FT /protein_id="CAE31240.1" FT /translation="MVMDIPRNTFKAALRQGQVQIGLWVGLADPYAAEAVAGAGYDWLL FT IDGEHAPNDVRQMLSQLQAVAPYPVHPVVRPVIGDVPLIKQILDIGAQTLLVPVVESAE FT EAATMVAATRYPPRGIRGVGSALARSSRWNQIPDYLHKADEEMCVLVQVETRAGMEQLD FT AITQVEGVDGVFFGPADLSASMGHLGNPGHPDVQAAILDAIRRVRAAGKAPGILTADVK FT LARQYIEAGALFVAVGVDTTLLVRGARDLVRQFKDEPAAQPSGPSVY" FT misc_feature 774668..775426 FT /note="HMMPfam hit to PF03328, DE HpcH/HpaI aldolase FT family, score 2.4e-144" FT CDS 775542..776456 FT /transl_table=11 FT /locus_tag="BB0741" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Comamonas testosteroni TsaR SWALL:P94678 FT (EMBL:U32622) (298 aa) fasta scores: E(): 1.8e-19, 31.72% FT id in 290 aa, and to Escherichia coli putative FT transcriptional regulator AbgR or b1339 SWALL:ABGR_ECOLI FT (SWALL:P77744) (302 aa) fasta scores: E(): 4.3e-19, 26.78% FT id in 295 aa" FT /protein_id="CAE31241.1" FT /translation="MAVVSHGGFRAAARALDVSQGGLTKSIAALEQEYGVDLIERSAKG FT VLLTPKGAAFVPLARAIVEEAERAEGWLRAQSGELSTSVSLGVSIEPSIRLAPAVLRDF FT RKALPDTSVHLTQGVALDLLGALRENRIELAVIRLPRNFDSSDLKVQRLYQSEPVIVGR FT AGHPGAGAASLRELVKYDWVVVGDTSRQGAMNDDSIWELFDREGLGRPRFAAVCNSLLS FT IVAMLMESDALARVPRALLDHSLARRNLIPIPVAEPPVPYWIATVHKASRRLSPEAQTL FT NAMLSSYARISGALSPERRPGEP" FT misc_feature 775542..775700 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 5.3e-10" FT misc_feature 775560..775625 FT /note="Predicted helix-turn-helix motif with score FT 1012.000, SD 2.63 at aa 7-28, sequence FT GGFRAAARALDVSQGGLTKSIA" FT misc_feature 775563..775655 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 775692..775715 FT /note="PS00030 Eukaryotic putative RNA-binding region RNP-1 FT signature." FT misc_feature 775770..776411 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 5.6e-29" FT CDS 776599..777576 FT /transl_table=11 FT /locus_tag="BB0742" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 2.2e-34, 38.94% id in 303 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 4.4e-33, 36.47% FT id in 318 aa" FT /protein_id="CAE31242.1" FT /translation="MQAIFKGLIIAATALSAGAATAAPAYPSKPVTLIVPFAPGASADG FT VARLLGRKLADGLGQPVVVENRPGAGGTTGLMALAHAAPDGYTLAIGATGAIAVNHHLP FT DAAPLDAAKQLAPVAKVADIPLVFIASRQSQLRSMQDIAAQAARTKGGLSYGTSGQFTS FT QHLAGELYADMAKTALVAVPYRGSSPALTDVIAGQVPLAVVDLTSAFPQIKAGKVTGLA FT VTGTRRAIAAPDIPTVAELGFPGYAASGWLGMFAPAGTPAPVVAQVSAQLETILADPQV FT GAELLTLAVEPAYLDPAEFAAYARAESDKWGKVIGAMGQAKSQP" FT misc_feature 776599..776664 FT /note="Signal peptide predicted for BB0742 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.968 between residues 22 and 23" FT misc_feature 776734..777558 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2e-79" FT CDS 777604..779280 FT /transl_table=11 FT /locus_tag="BB0743" FT /product="Thiamine pyrophosphate enzyme" FT /note="Similar to Citrobacter freundii valine-sensitive FT acetohydroxy acid synthase SWALL:P94783 (EMBL:D89674) (561 FT aa) fasta scores: E(): 5.2e-35, 30.03% id in 536 aa, and to FT Rhizobium meliloti putative acetolactate synthase isozyme I FT large subunit protein IlvB1 or r00567 or smc02263 FT SWALL:Q92S59 (EMBL:AL591784) (537 aa) fasta scores: E(): FT 3.6e-42, 35.49% id in 541 aa" FT /protein_id="CAE31243.1" FT /translation="MKAAMTGGEVFVEGLVRNGVKDLFFIPGIQLDWAVEALRKRAGEI FT NLYVPRHEQTTTYMADGYYRVTGKPGTAMVVPGPGALNAGAGLATAYASGSRMVFVTPQ FT IHADGVGKGYGLLHEIKDQSGFVQGLTKWHRFVGAPADIGASVDAAYAQAGQGRARPVG FT LEIPHNYFQAEVAGQDEAVPPARPAEPPMLDEQAIAAAAALIGQARLPVLYVGGGVFPT FT GAHEAVRRVAERIGAPVVMSDNGRGALPDHHPLAMNSLAGRAVFQHADVVVVVGSRFID FT ALMPAASWPAGRARFVYINIDAADMTAPRAPDVAIAADAAHALAALEERLRSRTAFTHE FT QAARVKAWAQAQIDRIEPQAAYIRAMRDALPEDGIFVNELTQVGYLSRIAFPVHAPRTY FT IGPGYQGTLGYGFPVALGAAVGGAGRRVLSITGDGGFGWNLQELATARRYNLPVTLVVF FT NDGHYGNVRAIQKREFGAEVAVDLCNPDFQLLARAFGIPSEQVDSPAALGAAIKASLSG FT GPALIEVKMGEVPSPWHLLRLQPMAGMAGPQAAANPLDGDY" FT misc_feature 777610..778140 FT /note="HMMPfam hit to PF02776, DE Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 2.2e-17" FT misc_feature 778183..778659 FT /note="HMMPfam hit to PF00205, DE Thiamine pyrophosphate FT enzyme, central domain, score 3.7e-21" FT misc_feature 778657..779175 FT /note="HMMPfam hit to PF02775, DE Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 1.2e-35" FT CDS 779277..780716 FT /transl_table=11 FT /locus_tag="BB0744" FT /product="putative aldehyde dehydrogenase" FT /note="Similar to Rhodococcus ruber 6-oxolauric acid FT dehydrogenase CddD SWALL:Q938F1 (EMBL:AY052630) (474 aa) FT fasta scores: E(): 1.9e-68, 43.46% id in 474 aa, and to FT Deinococcus radiodurans aldehyde dehydrogenase Dra0126 FT SWALL:Q9RZ27 (EMBL:AE001862) (495 aa) fasta scores: E(): FT 7.5e-68, 46.48% id in 469 aa" FT /protein_id="CAE31244.1" FT /translation="MMDYAEFYADGAFHPCGGAAVLPVYNPATEQAEASVRACSADDLE FT RAVRAAAAAGPGWGAAPPAQRRDALDRLAKALRQRAPDIVAGLAREIGCPVWLGELMQV FT PMAMKGMAHARDGMDAIAWRERIGNGLVERVPVGVIAAITPWNFPLHQIVAKVAAALAA FT GCTVVLKPSELAPGAAWQFIQACHDAALPPGVVNLVWGDAAIGQALVAHEAVDQVSFTG FT STEVGRSIMAEAGRHLKRTTLELGGKSAAVLLPDAELERALPVVLRMAVANSGQACVSQ FT SRLIVPRQRLAEAEQALAALAQAWPQGDPLDAATRLGPLANARQFERVNAMVSRALQQG FT ARLVAGGPGRPAGQARGWHVPVTILSDVTPDMELAQEEVFGPVLALMPYEDGGQDGGEA FT QALALANATRYGLSGAVWSADAARAAAFARRMKTGQVIINGADQNLATPFGGRGASGVG FT RENGRFGIEECLTWQSLHGAP" FT misc_feature 779310..780710 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 1.3e-127" FT misc_feature 780003..780026 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT CDS 780822..781784 FT /transl_table=11 FT /locus_tag="BB0745" FT /product="putative lipase" FT /note="Similar to Pseudomonas sp. lipase LipP SWALL:O52270 FT (EMBL:AF034088) (308 aa) fasta scores: E(): 8.7e-33, 41.4% FT id in 285 aa, and to Mycobacterium tuberculosis FT carboxylesterase family protein rv1399c or mtcy21b4.16c or FT mt1443 SWALL:P71667 (EMBL:Z80108) (319 aa) fasta scores: FT E(): 5.1e-33, 44.89% id in 274 aa" FT /protein_id="CAE31245.1" FT /translation="MAYDPGIQAYVERARRALGDMAGLKALSLAQRRVRADRYAALVRE FT PYPESLEVSDTYIVQPGHEIPVRVYRPRAEGPLPTIVYLHGGSFVAGSPQGHDFITTSL FT ACNTGAQVLSVHYRRAPENPYPAPTDDAYAALCWAQREAELLGVDPERIAVAGDSAGGN FT LAAACALMARDRGGPALRMQALIYPTLDADLDTPSYLNNTADAFLTREAMAFAVNAFLP FT QGLDTRDGYALPLRAADHAGLPPAYLLLADHDPLLDDGTRYAARLREAGNAVQLRIGAG FT MIHGFLRARRLSATADAEFHLLCAALRQALGLPEPAARW" FT misc_feature 781278..781316 FT /note="PS01174 Lipolytic enzymes 'G-D-X-G' family, putative FT serine active site." FT CDS complement(781795..782400) FT /transl_table=11 FT /locus_tag="BB0746" FT /product="putative transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa4987 SWALL:Q9HUH8 FT (EMBL:AE004911) (199 aa) fasta scores: E(): 4.2e-15, 35.29% FT id in 187 aa, and to Rhizobium loti hypothetical protein FT Mll7669 SWALL:Q985H7 (EMBL:AP003012) (205 aa) fasta scores: FT E(): 1.6e-11, 33.15% id in 190 aa" FT /protein_id="CAE31246.1" FT /translation="MQADDTRLVGQAIRRIRKEKKISLQTLAARSGVATGMLSQIERDL FT GNPSLKTLARIRQALDVPLSALFEADDETAADAAGAGDLAAHVRRNGTRRVMQFGTPLM FT TKEMLTPPAGQRLQFMVLNIQPGGTSGAPPLSYAAEKGGMVLQGAFELELDGQTLQLQR FT GDSFQFDGATPHVFRNPYDEPASILWIIAHEPAAQRHF" FT misc_feature complement(782200..782364) FT /note="HMMPfam hit to PF01381, DE Helix-turn-helix, score FT 1.5e-13" FT misc_feature complement(782272..782337) FT /note="Predicted helix-turn-helix motif with score FT 1212.000, SD 3.31 at aa 22-43, sequence FT ISLQTLAARSGVATGMLSQIER" FT CDS complement(782421..783422) FT /transl_table=11 FT /locus_tag="BB0747" FT /product="putative exported protei" FT /note="Similar to Variovorax paradoxus, and Burkholderia FT cepacia 2,4-diphenoxyacetic acid gene cluster SWALL:Q9RHQ7 FT (EMBL:AB028643) (337 aa) fasta scores: E(): 6.1e-38, 40.38% FT id in 312 aa, and to Rhizobium meliloti hypothetical FT protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 FT aa) fasta scores: E(): 1.8e-40, 41.87% id in 320 aa" FT /protein_id="CAE31247.1" FT /translation="MSKSLLSRLARLTRRAAGVALLAGAATAQAAYPERPVTLVVPFAT FT GGNSDIVARLIAERMGQALGQTVIVENRAGAGGLVGNQAVARAKPDGYTLLLGGMSTQI FT LLAGTAPQLPYDPVKDFSAVALISKVPLVLVVPASSPAQDLKSFAEYLRQKPGAYNFSS FT AGAGTSGHVTAQYFADAIGAKVVHVPYRGSSPALVDLVEGRNAYLVDTPPVIKELVKSG FT KIRALASFTETRLADLPEVPTVAEAGLGEVIKEKMQPWQALFVPAGTPPEVEARIHDAL FT GKAMADPALQQRLTQMGLVPMSGSLADAKQLFEVDYAKWIPILDGMGLKTPR" FT misc_feature complement(782436..783269) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.8e-88" FT misc_feature complement(783333..783422) FT /note="Signal peptide predicted for BB0747 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.912 between residues 30 and 31" FT CDS 783714..784088 FT /transl_table=11 FT /locus_tag="BB0748" FT /product="putative exported protein" FT /note="Weakly similar to Escherichia coli O157:H7 z3937 FT protein z3937 or ecs3506 SWALL:Q8X978 (EMBL:AE005493) (131 FT aa) fasta scores: E(): 0.22, 27.61% id in 105 aa" FT /protein_id="CAE31248.1" FT /translation="MIRRLLLILMLCAPLAACETLQSGQGGADKYSPTALRENLKKGVT FT TVEDVRRIYGEPRSINQGPEGVTMMVYDPDTSRNDMLSTAMSAVGLGSVGGAARPESRS FT LYVHFERNRVESYSLSSSKN" FT misc_feature 783714..783764 FT /note="Signal peptide predicted for BB0748 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.627 between residues 17 and 18" FT CDS 784138..784476 FT /transl_table=11 FT /locus_tag="BB0749" FT /product="putative lipoprotein" FT /note="Similar to Mycobacterium tuberculosis hypothetical FT 10.8 kDa protein rv1214c or mtci364.26c or mt1252 FT SWALL:O05315 (EMBL:Z93777) (110 aa) fasta scores: E(): 7.2, FT 28.44% id in 109 aa" FT /protein_id="CAE31249.1" FT /translation="MLKTLCKTALAAGAALGLAGACAAQGAETHLAMAEMGGTMHAAAQ FT ACGDYKPAELSDMKARQQQAMAGMGVSAEQFETAFAAGLEKGRQQIAGASAQQKQQMCE FT QLRAMPRQ" FT misc_feature 784138..784215 FT /note="Signal peptide predicted for BB0749 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.823 between residues 26 and 27" FT misc_feature 784171..784203 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(784486..785295) FT /transl_table=11 FT /locus_tag="BB0750" FT /product="probable enoyl-CoA hydratase" FT /EC_number="4.2.1.17" FT /note="Similar to Escherichia coli probable enoyl-CoA FT hydratase PaaG or b1394 SWALL:PAAG_ECOLI (SWALL:P77467) FT (262 aa) fasta scores: E(): 1.2e-24, 34.6% id in 263 aa, FT and to Caulobacter crescentus enoyl-CoA hydratase/isomerase FT family protein cc2575 SWALL:Q9A582 (EMBL:AE005925) (265 aa) FT fasta scores: E(): 3.6e-44, 49.24% id in 266 aa" FT /protein_id="CAE31250.1" FT /translation="MSKFLRHDRDGAIWTVTLDQPETRNALTGNTAVQEIVDLCEEVAR FT DDSVRVIILTGADPVFSSGGNVKDMRRFFDDSISAADIRQEYRHGIQRLTRALYNIDVP FT TIAAVNGAAIGAGCDLACMCDIRIASEQASFAESFIKVGIVPGDGGAWLLPRVVGMSRA FT LEMSFTGDAMAAAEALACGLVSRVVPHDQLLAQARQLAERIAANPGATLRLTKRLLREG FT QELGLDSLLEQSASAQAIAHKTPEHREAVTAFIEKRRPDFSRAARRG" FT misc_feature complement(784729..785256) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 9.9e-51" FT CDS complement(785331..786146) FT /transl_table=11 FT /locus_tag="BB0751" FT /product="probable short-chain dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3187" FT /note="Similar to Cavia sp peroxisomal trans 2-enoyl CoA FT reductase SWALL:Q9JIF5 (EMBL:AF232010) (302 aa) fasta FT scores: E(): 3.4e-26, 39.92% id in 253 aa, and to Rattus FT norvegicus putative short-chain dehydrogenase/reductase FT MrnA, complete cds SWALL:Q9WVK3 (EMBL:AF099742) (303 aa) FT fasta scores: E(): 6.3e-27, 39.14% id in 258 aa" FT /protein_id="CAE31251.1" FT /translation="MTSSSAPPIDDLRVLRADALAGRSAFVSGAGSGIGRGIALRLLSL FT GMNVFGTGRRAEPLAETASLAQGLSGRFDHAPCNVRETAAIEALVAEVGQRQGMDLLVN FT NAGGQFFAPAAEISRKGWDAVIDVNLNAVFVVTKAAYPFLKARKGAVVNISLSGVDRGS FT MGIAHSIAARAGVLGLTRTLALEWARDDIALNCIGPGAVITEGLAGEAARAMLDRLVEA FT TPMGRPTRVEEVAELVAFLATPAAHLMTGQLIQIDGAAHLGSGLHMLAA" FT misc_feature complement(785367..786086) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 5.8e-55" FT CDS complement(786193..787287) FT /transl_table=11 FT /locus_tag="BB0752" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3188" FT /note="Similar to Streptomyces coelicolor hypothetical FT protein sco2032 or sc3a3.10 SWALL:Q9S2Y3 (EMBL:AL109849) FT (404 aa) fasta scores: E(): 7.9e-21, 33.93% id in 330 aa, FT and to Rhizobium loti hypothetical protein Mlr6096 FT SWALL:Q98A97 (EMBL:AP003008) (387 aa) fasta scores: E(): FT 1.6e-19, 32.78% id in 305 aa" FT /protein_id="CAE31252.1" FT /translation="MPEPAAHLPRPLAGRRVVDLSQFIAGPTAAQYLADFGADVVKIES FT PQGDGVRTLQGNAYGSYYARSFNTGKRSQVLDLRVAADRAALDALLETADAFICNLAPS FT SLAKLDLRGPALRARFPRLVIALVSGYGQQDERVCMDTIAQCESGFALLNGDEDGSPRL FT STSWPVDMFSGMYTGMSCAMAMLDPAGQGCLIDLSMMEVAAAMLIGPAALAVSEGDALG FT PPMGNRDRASAPSSIYRCADGHVYILGGVDTYWARLRPLIGAEDAPFTERLRRAAHFDA FT QVEAWTLPQRREAVLARMHELQIPAGNVRPPEEALAMIRGLRPGAVSRPLPSGEHVPAF FT PALFDGQRLPRTATPHVGGGRRAG" FT misc_feature complement(786208..786240) FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT misc_feature complement(786514..787068) FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 9.8e-12" FT CDS complement(787280..788614) FT /transl_table=11 FT /locus_tag="BB0753" FT /product="coenzyme A ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3189" FT /note="Similar to Archaeoglobus fulgidus coenzyme F390 FT synthetase af2013 SWALL:O28266 (EMBL:AE000964) (440 aa) FT fasta scores: E(): 8e-55, 39.18% id in 444 aa, and to FT Methanosarcina acetivorans coenzyme A ligase ma2244 FT SWALL:Q8TNN9 (EMBL:AE010911) (433 aa) fasta scores: E(): FT 1.7e-47, 37.81% id in 439 aa" FT /protein_id="CAE31253.1" FT /translation="MKQQERQPYSDTIWDEAETWSRDRIEQFQLDALRRQLQRVARTSN FT HYRQVFAAAGFEPGDLKSLDDLRRLPFTHKRDYLAGLQAEPPFGSLAAVAPGEAVRVHF FT SSGTTARPAPVLWTQADIERWADLYARYLYGQGLRRGDVFQCMFNYAWFVGGLGATLAA FT QHVGALVIPASSGDTQRQIETIYQYGTQCVIGTPSFMAHMAEAAQAMGRDLATSPVRMV FT CVGGEPGASIPGTRERIERQWGARMYDCYGALECQPIGWDTAAQLGPTLAEDFIYVEIL FT HPETHEPVADGERGVLVLTHLDKQACPLVRWWTGDIVVRDSRPAPDGRTHARLTGGVLG FT RSDDMLIVRGVNLFPSAIEDVVRAFPGLTNEYVIVLDDSLKDPNTGFLTGVKLRVERES FT GAAADVGERLSQRLREKLQVRFQVEVVESGTLPRTVHKAKRVIHA" FT CDS complement(788568..789251) FT /transl_table=11 FT /locus_tag="BB0754" FT /product="TetR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3190" FT /note="Similar to Bacillus halodurans transcriptional FT regulator bh2958 SWALL:Q9K8P5 (EMBL:AP001517) (215 aa) FT fasta scores: E(): 5.2e-09, 24.73% id in 190 aa, and to FT Deinococcus radiodurans transcriptional regulator, tetr FT family dr2376 SWALL:Q9RRV9 (EMBL:AE002068) (197 aa) fasta FT scores: E(): 5.1e-08, 27.97% id in 193 aa" FT /protein_id="CAE31254.1" FT /translation="MASAHQTPADANGGESRDEILRAAAELFMEFGYAATSIDAVAQRL FT GSTKGRIYHHYRSKADLFFDVQVTAMNRLTAQVEPLAREGGGAVGRLAAMALRHTQILL FT KEMPMQKVAVQGLERHLLEASSAAKRLRAVVKMRDDYEQMFVEVIDDGIREGSFVDLPP FT RLLSKPFFGALNWATVWYSQRRLQSEEAIDDIAHALAAYALRGLLKDSNDEAARETALF FT RYDLG" FT misc_feature complement(789054..789194) FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 3.2e-16" FT misc_feature complement(789081..789146) FT /note="Predicted helix-turn-helix motif with score FT 1421.000, SD 4.03 at aa 36-57, sequence FT TSIDAVAQRLGSTKGRIYHHYR" FT CDS complement(789277..790440) FT /transl_table=11 FT /locus_tag="BB0755" FT /product="putative acyl-CoA dehyrdogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3191" FT /note="Similar to Thermoanaerobacter tengcongensis acyl-CoA FT dehydrogenases CaiA or tte0545 SWALL:Q8RC91 (EMBL:AE013024) FT (380 aa) fasta scores: E(): 2.7e-50, 40.1% id in 379 aa, FT and to Pseudomonas aeruginosa probable acyl-CoA FT dehydrogenase pa2552 SWALL:Q9I0T2 (EMBL:AE004683) (375 aa) FT fasta scores: E(): 2.7e-49, 40.22% id in 363 aa" FT /protein_id="CAE31255.1" FT /translation="MTVIWKPALDDAATRWQTLAERLGRERFGPLAPELDRDQRYPWET FT IEALVEHKFAGLFLPTQWGGQGANLTTTVAAVEALGTHCASTSAIMCAYQLGAFPILLA FT GTDAQKDFYLREMTLGRATSFALSERIAGSDAAAIEATATREGDGWRLRGEKYWIGNGG FT ASRYYVVFAKTDPAAGGRGVSAFMVDKEQPGAEIDELSDKMGIRGTQTSNLKLDLVVPD FT SARVGELNRALRLALQTLNVGRIMVAAQSLGVALGAYREAAGRAVARRAFGQPIGENQA FT IGFRLADMATEISAARMMLYEAARAYDAGQDVSNLGAMAKLFSSEVSHRVVDNTVQIWG FT GLGYCKPTVAERLYRDQRILEIYEGSSEIQRLVLSRAVRKEAEEAAN" FT misc_feature complement(789304..789753) FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.4e-59" FT misc_feature complement(789763..790065) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 5.1e-27" FT misc_feature complement(790027..790065) FT /note="PS00072 Acyl-CoA dehydrogenases signature 1." FT misc_feature complement(790066..790392) FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 2.2e-07" FT CDS complement(790437..791438) FT /transl_table=11 FT /locus_tag="BB0756" FT /product="branched-chain amino acid ABC transporter, FT permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3192" FT /note="Similar to Deinococcus radiodurans branched-chain FT amino acid ABC transporter, permease protein Dr0282 FT SWALL:Q9RXM8 (EMBL:AE001889) (334 aa) fasta scores: E(): FT 2.3e-21, 31.77% id in 321 aa, and to Archaeoglobus fulgidus FT branched-chain amino acid ABC transporter, permease protein FT Af0824 SWALL:O29434 (EMBL:AE001047) (323 aa) fasta scores: FT E(): 4.6e-21, 28.57% id in 294 aa" FT /protein_id="CAE31256.1" FT /translation="MIRLPLRRAALLPLAVIVLYLPAWLGGSPAIYSAAVLIAILAVMS FT YGLDVVVSDLGEVSLGHTVFFATGAYVTALLSTRTGAGAWTTLAATIVAALGVSAVVGL FT VTLRLREFVFSLVTYAVAVVAVTVAANWAFLGGSDGLRGLPTLDLSVAGLSLTAGNDEE FT LWPYAFGLLVVVIYLIDRFRHSRLGTAAIMVHQNPRLATMSGIDPARVRLQVFLFSAPI FT SAAAGWLYAYQRAYVSADILETYFLILMLTAVVLVGRRQLLGPLLATALVLIQEKFFSF FT GGYVDKIVLGSLLVLVLAFFPQGLMGLVRPLARLARRRQPATPVATTLENPK" FT misc_feature complement(join(790509..790577,790668..790736, FT 790902..790949,791037..791105,791124..791192, FT 791205..791264,791283..791351,791361..791414)) FT /note="8 probable transmembrane helices predicted for FT BB0756 by TMHMM2.0 at aa 9-26, 30-52, 59-78, 83-105, FT 112-134, 164-179, 235-257 and 288-310" FT misc_feature complement(790509..791438) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 1e-05" FT misc_feature complement(791364..791438) FT /note="Signal peptide predicted for BB0756 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.985) with cleavage site FT probability 0.390 between residues 25 and 26" FT CDS complement(791438..792310) FT /transl_table=11 FT /locus_tag="BB0757" FT /product="branched-chain amino acid ABC transporter, FT permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3193" FT /note="Similar to Deinococcus radiodurans branched-chain FT amino acid ABC transporter, permease protein dr0281 FT SWALL:Q9RXM9 (EMBL:AE001889) (285 aa) fasta scores: E(): FT 1.8e-25, 31.57% id in 285 aa, and to Brucella melitensis FT high-affinity branched-chain amino acid transport system FT permease protein livh / high-affinity branched-chain amino FT acid transport ATP-binding protein livg bmeii0874 FT SWALL:Q8YBM5 (EMBL:AE009721) (916 aa) fasta scores: E(): FT 1.3e-26, 34.5% id in 284 aa" FT /protein_id="CAE31257.1" FT /translation="MNLLQQLINGIVLGHAYALIAIGWTLLLGVARLVNFGHGQMYMVG FT AFVTWWATTSAGMPYLLALPTAMALGALIGLAMQRIMLRATFEQNLVSIMIMTLGFGYV FT IQGAASLIFGSTGQILDTAWSQRDIEVGELWVTWQDAAIVVAAIAVFAGLKWLLEGSRA FT GRLVRMVAEDPKLAQLAGVDVRRIYYGVFAFEGAAVAFAAGMVAPRTPILTSMGFEEVI FT ITFVVVVLGGIGSVTGSYAAGVALGVFTALFSALVSPAYATAAAFLVLIGVLVLRPGGL FT SAGAARGVH" FT misc_feature complement(791453..792304) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 5e-20" FT misc_feature complement(join(791492..791560,791579..791647, FT 791690..791749,791837..791905,791972..792040, FT 792077..792145,792209..792277)) FT /note="7 probable transmembrane helices predicted for FT BB0757 by TMHMM2.0 at aa 12-34, 56-78, 91-113, 136-158, FT 188-207, 222-244 and 251-273" FT CDS complement(792307..793056) FT /transl_table=11 FT /locus_tag="BB0758" FT /product="branched-chain amino acid ABC transporter, FT ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3194" FT /note="Similar to Deinococcus radiodurans branched-chain FT amino acid ABC transporter, ATP-binding protein dra0260 FT SWALL:Q9RYP9 (EMBL:AE001863) (238 aa) fasta scores: E(): FT 4.8e-30, 49.19% id in 248 aa, and to Ralstonia solanacearum FT probable amino-acid composite ATP-binding transmembrane ABC FT transporter protein rsp0707 or rs01742 SWALL:Q8XRX4 FT (EMBL:AL646080) (247 aa) fasta scores: E(): 5e-30, 45.37% FT id in 238 aa" FT /protein_id="CAE31258.1" FT /translation="MNAPPSDQAVLSARQLEVGYAGNRALGLDALSVGRGEIVGVIGAN FT GAGKSTLVNALLGWSRGRPTVRGEIRLDGRRIDATPTHQRVRAGLLLVPEGRLIFASMN FT VEENLSAAFDAGSTDGRRFYTRDEVFQLFPRLAERRRHLGAQLSGGERQMLGIGRALMM FT GPRVLLLDEPSIGLAPMLVSQVLQTLQTLARSGLSILLVEQNVRAAMEVVDRLLLLERG FT RLVLEGPAASVGADPRIAQAYLGAHAA" FT misc_feature complement(792391..792951) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.1e-37" FT misc_feature complement(792574..792618) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(792907..792930) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(793053..793844) FT /transl_table=11 FT /locus_tag="BB0759" FT /product="putative ABC transporter ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3195" FT /protein_id="CAE31259.1" FT /translation="MIAQPEAAAPAPALSVQALGVRYGALVALEDVSWEVRAGELLGII FT GPNGAGKSSCYDAVSALIPRTGTVCLHGRDISAVPAHGLAALGIKRAFQQNAFFDDLSV FT LENMMAVLGEQAQAGLLASALNPLGAARRRAQARAWAAGQLERFGVPAACHDLHPKEIS FT YGMQRMLSIALAYGRSATVLLLDEPAAGLGGADMAALVRLLGELKSEGVALVVIEHHME FT LIMAVADRICVLNLGRPLACGAPAAIQNDPRVLEAYLGSAQ" FT misc_feature complement(793134..793664) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 5e-10" FT misc_feature complement(793317..793361) FT /note="PS00211 ABC transporters family signature." FT CDS complement(793841..794980) FT /transl_table=11 FT /locus_tag="BB0761" FT /product="branched-chain amino acid ABC transporter, FT binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3196" FT /note="Similar to Citrobacter freundii leu/ile/val-binding FT protein precursor LivJ SWALL:LIVJ_CITFR (SWALL:P25399) (367 FT aa) fasta scores: E(): 2.4e-14, 28.41% id in 359 aa, and to FT Rhizobium loti ABC transporter, binding protein mlr7721 FT SWALL:Q985D9 (EMBL:AP003012) (399 aa) fasta scores: E(): FT 4e-17, 26.68% id in 371 aa" FT /protein_id="CAE31260.1" FT /translation="MKRIHRLFTAGLLALSLGAAAQAQQTPIKVGVIFPLSGGAGPQGQ FT HVTQAIQAMAAVINESGGVMGRQIEIVSRDDESTPAVGVSRATELISAGVSVIIEGWNS FT PVTLAMQPVIARAGVLDITAISKADPILSGEGNPLAIRLNSSNSQDGAVIADYIKSVGA FT KRVAFLTENDAYGNGAQESIETSLKKLGYAYEKVAEEKFPFTQADFRVAMTNVRAAKPD FT VTVAINANEGLGMPAIIRQARQSRLPGKLVSAVGTVAPSVINVAGDAADGLIGADIYFP FT DVEPFASNPANQRFVAKTQEMFKYTPDKFMALGATSLQVWAMAANELKTLDREAIAKRI FT RGGAFKGTAMGDLQFEPNGQLKSNYYLFRVDGRKIVVQP" FT misc_feature complement(793847..794917) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01094, DE Receptor family ligand FT binding region, score 0.053" FT misc_feature complement(794912..794980) FT /note="Signal peptide predicted for BB0761 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.863 between residues 23 and 24" FT CDS 795305..796072 FT /transl_table=11 FT /locus_tag="BB0762" FT /product="short chain dehydrogenase" FT /EC_number="1.1.1.35" FT /note="ortholog of Bordetella pertussis (BX470248) BP3197" FT /note="Similar to Bos taurus 3-hydroxyacyl-CoA FT dehydrogenase type II HadH2 SWALL:HCD2_BOVIN (SWALL:O02691) FT (261 aa) fasta scores: E(): 4e-41, 52.17% id in 253 aa, and FT to Mycobacterium tuberculosis oxidoreductase, short-chain FT dehydrogenase/reductase family rv1144 or mtci65.11 or FT mt1177 SWALL:O06544 (EMBL:Z95584) (250 aa) fasta scores: FT E(): 4.8e-47, 58.98% id in 256 aa" FT /protein_id="CAE31261.1" FT /translation="MDTQGISALVTGGASGLGLAAARRLLAAGARVVIADLPGSPGEEV FT ARELGPDARFAPADVTREDDMNAACDLAESLGPLRALVHCAGRGGPVRLLDKEGNPGPM FT DTYADIVRVNLLGTFNTLRLVAARMARNPLTPEGERGVCVLTASVAAYEGQIGQIGYAS FT SKAGVVGMTIVAARDLASKAIRVCTIAPGIFDTPMLARVSAEARKTLAASVPHPARLGS FT PDEYAQLAQHIIGNAMLNGETIRLDGALRMAPR" FT misc_feature 795305..795385 FT /note="Signal peptide predicted for BB0762 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.847) with cleavage site FT probability 0.456 between residues 27 and 28" FT misc_feature 795314..796054 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 8.5e-43" FT misc_feature 795746..795832 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 796105..796887 FT /transl_table=11 FT /locus_tag="BB0763" FT /product="enoyl CoA dehydratase/isomerase" FT /EC_number="4.2.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3198" FT /note="Similar to Escherichia coli carnitinyl-CoA FT dehydratase CaiD or b0036 SWALL:CAID_ECOLI (SWALL:P31551) FT (260 aa) fasta scores: E(): 2.5e-30, 42.52% id in 254 aa, FT and to Rhodococcus fascians enoyl CoA hydratase EchA1 FT SWALL:Q9ZHG2 (EMBL:AF063588) (275 aa) fasta scores: E(): FT 1.1e-57, 63.6% id in 250 aa" FT /protein_id="CAE31262.1" FT /translation="MSVQAPDAAEVLVDRADGILTITINRPQARNAINPAVARGIAAAV FT DELDASDELRIGILTGAGGSFCAGMDLKGFLRGELPSIEGRGFGGLTARPPRKPLIAAV FT EGYALAGGFELVLACDLVVAADNAQFGVPEVKRGLAATAGGLVRLPRQLPYRIALELAL FT TGDMFPARRAHGYGLINQLTEPGQALDAARELARRIVANGPLAVAASKRVVVESQDWPA FT DEVWERQAALTEHVFESADAREGSAAFAEKRQPVWQGK" FT misc_feature 796162..796656 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 8.4e-42" FT misc_feature 796405..796467 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 796891..797280 FT /transl_table=11 FT /locus_tag="BB0764" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3199" FT /note="Similar to Archaeoglobus fulgidus hypothetical FT protein Af1292 SWALL:O28977 (EMBL:AE001015) (136 aa) fasta FT scores: E(): 5.3e-05, 31.62% id in 117 aa, and to FT Methanopyrus kandleri predicted nucleic-acid-binding FT protein containing a zn-ribbon mk1377 SWALL:Q8TVL2 FT (EMBL:AE010431) (134 aa) fasta scores: E(): 0.0002, 33.02% FT id in 109 aa" FT /protein_id="CAE31263.1" FT /translation="MATDTRFDGPGPDACYHAALAEGRLLLQHCEDCAAVRFPPALVCR FT ACGGARLAWRESSGRGSVYAATTVRDRAGDYNVSLVELEGGARMMSRVEGIEAARVRIG FT QPVRARIVAGEEPYVVFAPHDGGAA" FT misc_feature 796921..797262 FT /note="HMMPfam hit to PF01796, DE Domain of unknown FT function DUF35, score 4.7e-13" FT CDS 797277..798428 FT /transl_table=11 FT /locus_tag="BB0765" FT /product="putative thiolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3200" FT /note="Similar to Rhodococcus sp. NCIMB 9784 non-specific FT lipid carrier-like protein CampC SWALL:Q93TU4 FT (EMBL:AF323755) (408 aa) fasta scores: E(): 3.7e-23, 31% id FT in 387 aa, and to Pseudomonas aeruginosa hypothetical FT protein Pa1016 SWALL:Q9I4V7 (EMBL:AE004534) (383 aa) fasta FT scores: E(): 1.2e-90, 62.14% id in 383 aa" FT /protein_id="CAE31264.1" FT /translation="MSRALRGRAVIAGIGNTHRWQAPGRTPFDQLQEAAVLALEDCGLA FT MAQVDGLFCAMSTSGLPVLNVAERLGIRPRHADGTMVGGASFLFHLQAAIAALETGLCE FT VALICYGSNQLTAGGKLASMPDPQPYEAPFRPRYPMSSYALAAARHMHQYGTTREQLAD FT VAVAARLWARRNPHAYARDPLARADVLGARMISDPLTKADSCLVTDGGAALVLVRAERA FT ADLPRPPVYVLGTGVAVSHRQISAMPDLTVTCAVESGRRACEMAGVAPRDMDHVMLYDA FT FTINTLLFLEDLGFCAKGEAGAFVESGAIAPGGSLPVNTNGGGLSCNHPGMYGLFTVIE FT SVAQLRGECGERQVEGARLSMAHANGGVLSSQATVILGTAETL" FT misc_feature 797973..798401 FT /note="HMMPfam hit to PF02803, DE Thiolase, C-terminal FT domain, score 0.0047" FT CDS 798425..799300 FT /transl_table=11 FT /locus_tag="BB0766" FT /product="putative hydratase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3201" FT /note="Similar to Pseudomonas aeruginosa PhaJ2 or pa1018 FT SWALL:Q9LBK1 (EMBL:AB040026) (288 aa) fasta scores: E(): FT 8.9e-40, 46.45% id in 282 aa, and to Mycobacterium FT tuberculosis maoc family protein rv3389c or mtv004.47c or FT mt3496 SWALL:Q11198 (EMBL:U27357) (290 aa) fasta scores: FT E(): 1e-31, 41.61% id in 298 aa" FT /protein_id="CAE31265.1" FT /translation="MRAAMAIDPDRLLAAEIPAVEQQYDWRQCVLYALGIGAGLDPEDG FT LDLPFVDETRLKVAPTFACVLADPGFWMRDLPLGLDWLRTVHGEQSMRVHRPLAGRASV FT RGVTRIVDVADKGRDKGALIYAERELIDLADGAPLATLSQTVFCRGDGGFGGKPSARPP FT PPPVPARAPDASVHARTSLQSALIYRLSADLNPLHIDPAVARRAGFPRPILHGMASFGA FT VGQALVKACCGGEPAAVRGMGGRFSAPVFPGETVRVDIWRAGPGRAAFQARVAARDVVV FT MDNGTFDYEA" FT misc_feature 798911..799276 FT /note="HMMPfam hit to PF01575, DE MaoC like domain, score FT 8.6e-28" FT CDS 799336..800424 FT /transl_table=11 FT /locus_tag="BB0767" FT /product="hypothetical protein Xcc2124" FT /note="ortholog of Bordetella pertussis (BX470248) BP3202" FT /note="Similar to Xanthomonas campestris hypothetical FT protein Xcc2124 SWALL:AAM41409 (EMBL:AE012319) (354 aa) FT fasta scores: E(): 1.3e-28, 32.7% id in 370 aa, and to FT Arabidopsis thaliana hypothetical 44.2 kDa protein t22a6.50 FT or at4g24220 or at4g24220, t22a6.50 SWALL:Q9STX2 FT (EMBL:AL078637) (388 aa) fasta scores: E(): 1.3e-17, 30.42% FT id in 378 aa" FT /protein_id="CAE31266.1" FT /translation="MTGSTAGKVLVVGALGVVGRAALEHFGQRPGLARVGLSRRAPDFA FT PEATWISADLRDAQATRAALAAHGDATHVVYAALNEQPDLLKGWRDSGNVDLNTRMLRN FT TLDALREAPLRHVTLLQGTKAYGVHTGRPMPVPARETDAVRDHANFYFDQQDLLAERAA FT AQGFAWTIFRPQIVLGVALGSAMNPVATLGAYAALSREAGQPLRYPGHPHLLTECTDAR FT LIARAIAWAWDEPRAHGEAFNIANGDVVLWQPVFERLAALFGMPLGEPVDTRMREAMPE FT QAERWRAIAERERLAVPQLRDLIGLSWQYADATWAARHPLPVPPLVSTIKLRQAGFGDC FT IDTQECIVEHLREMQRLRYLPR" FT CDS complement(800458..801438) FT /transl_table=11 FT /locus_tag="BB0768" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 2.2e-40, 39.56% id in 321 aa, and to Rhizobium meliloti FT hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 5.2e-38, 39.24% FT id in 316 aa" FT /protein_id="CAE31267.1" FT /translation="MSVRIKALALAAALALPAAALAQDPAARYPDKPVTLVIPFPPGGT FT SDVVGRQLAQQLGETLGGSFVVNNKAGASTLIGATYVARAPKDGYTLLLSSGSTFTVTP FT HLMRQMPYTLEDFAPVAAIATVPFAFVVKKDFPARSVAEYVAYAQTHPGKINNATNGQG FT SMVHLLGELVATGLRAQVTQVHYKGAAPATMDMIGGIVDSNVEALTSALPNVQAGQYRA FT LAVLSAERQPLMPDVPTFRELGYPSIVGETWYAVFAPAGTPAPVVEKLNAALREITGST FT RFAEAMRKLGNEARTSTPAELTRITQRESQRWGELIKQAGIPPVQ" FT misc_feature complement(800473..801294) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.4e-93" FT misc_feature complement(801373..801438) FT /note="Signal peptide predicted for BB0768 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 22 and 23" FT CDS complement(801540..802562) FT /transl_table=11 FT /locus_tag="BB0769" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical FT protein sco6307 or scif3.09C SWALL:Q93RT4 (EMBL:AL590982) FT (320 aa) fasta scores: E(): 6.7e-06, 30.83% id in 334 aa, FT and to Arthrobacter nicotinovorans hypothetical polyketide FT cyclase SWALL:Q93NG4 (EMBL:AF373840) (310 aa) fasta scores: FT E(): 0.0014, 30.26% id in 337 aa" FT /protein_id="CAE31268.1" FT /translation="MDSPRWKKRPEGSNWGDFGPDDQIGRMNLLTPQARLRAIREVEHG FT IAFCLSLPLDYPGGNTLFQHRKAPRFFYEKRGPSHNYNFRLSNVCGCFSDVVSDDAVLM FT YTQYSTQWDGLGHVGQMFDANDDGIPEKVYYNGYRGGVDVVGPDDAPDNLGAKAIGIER FT LATAGVQGRGVLVDLERRHGRERALVGYDGLMAALDAQRASVEPGDFLCLYTGFADLVL FT EMNKQPDGEVLARSCAVLDGRDEKLLQWITDSGIVAICADNFAVEAYPAGPGKGEHYPG FT LPLHAHCLFKLGLNLGELWYFAELAQWLRQHDRSSFLLTAPPLRLPGAVGSPATPIATV FT " FT CDS complement(802844..803641) FT /transl_table=11 FT /locus_tag="BB0770" FT /product="probable transcriptional regulator" FT /note="Similar to Ralstonia solanacearum probable FT transcription regulator protein rsc3411 or rs01720 FT SWALL:Q8XTY4 (EMBL:AL646075) (262 aa) fasta scores: E(): FT 5.1e-31, 42% id in 250 aa, and to Rhodococcus opacus PcaR FT pcaR SWALL:O67983 (EMBL:AF003947) (265 aa) fasta scores: FT E(): 1.3e-20, 36.32% id in 234 aa" FT /protein_id="CAE31269.1" FT /translation="MAARHRKASTPMAESALLIQSLEKGLAVLEAFRNSETMNLQEIAR FT ACGITSGSAQRVAYTLERAGYLRKDPVSRRYRVTVKAVGLGYSFLAREPVFQHAHAVLH FT QLNQECGEIVNLSVPDGEDNMVFVMRIPTSKHIPVYMPAGTRIPMLSSASGRALLAHLP FT PEQLEARLARMAVPRHTSRTTTDLAVLRHLIDEAREHRYAYADEEFYQGDINVAATIVD FT ETGAPVAAVNISVPKPRWSLERAREDLGPLAVRAARAISKNAL" FT misc_feature complement(802853..803416) FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 4.3e-35" FT misc_feature complement(803465..803530) FT /note="Predicted helix-turn-helix motif with score FT 1120.000, SD 3.00 at aa 22-43, sequence FT MNLQEIARACGITSGSAQRVAY" FT CDS 803770..805077 FT /transl_table=11 FT /locus_tag="BB0771" FT /product="putative FAD dependent oxidoreductase" FT /note="Similar to Proteus mirabilis amino acid deaminase FT AaD SWALL:Q51890 (EMBL:U35383) (473 aa) fasta scores: E(): FT 1.9e-39, 34.33% id in 431 aa, and to Agrobacterium FT tumefaciens oxidoreductase AgaE or atu3050 or agr_l_3510 FT SWALL:Q8UBG6 (EMBL:AE009235) (449 aa) fasta scores: E(): FT 2.1e-67, 45.54% id in 426 aa" FT /protein_id="CAE31270.1" FT /translation="MLSLFDKIMQDSKPVNEALPRRVDVAIIGGGIIGVSTAYALARAG FT VSVALFEKGRLAGEQSSRNWGWVRTLCRDAAEIPLALRAHALWTEIQAEVDVGYRRTGM FT LYLQEDERDAAAHQRWIEQARAYGVDAALLGRAAALRCLPASCRPWSGAMYSASDGVAE FT PELATHGIATLARRHGAALFEQCAVRGLDTAAGRVDGVVTERGRVAAEAVVMAAGAWSR FT LLCGNSGADFPQLKVRGSVLRTAPCDLPLAATVNGKDFTCRKRADGGYTVSQFGASMAD FT IVPDSFRLLGKFYRAWLANNAFVKLRLGKRFFEELAIPRRFALDRATPFEQCRVLDPAP FT SASAVARAWQRLVQAFPDFRATSVAASWGGYIDVTPDALPVISPVPALDGAYLASGFSG FT HGFGIGPAVGELVADMIRGRAAQSAVQPFRFTRFSE" FT misc_feature 803836..805032 FT /note="HMMPfam hit to PF01266, DE FAD dependent FT oxidoreductase, score 0.00064" FT CDS 805074..806147 FT /transl_table=11 FT /locus_tag="BB0772" FT /product="putative dipeptidase" FT /note="Similar to Brevibacillus borstelensis thermostable FT dipeptidase Bdp SWALL:Q9KH70 (EMBL:AF268476) (307 aa) fasta FT scores: E(): 1.9e-16, 33.69% id in 184 aa, and to Ralstonia FT solanacearum putative dipeptidase protein rsp0056 or FT rs02031 SWALL:Q8XTQ0 (EMBL:AL646076) (323 aa) fasta scores: FT E(): 4.6e-33, 37.95% id in 332 aa" FT /protein_id="CAE31271.1" FT /translation="MISSGREADSHFVQGEMQMALAADLHRDAVVVDGLVFFSDGSTRD FT MLAGGVSAINLTVTEMSADFEQALKDVMAWRQRCQDPASGWTLVERAADIARAKREGKL FT GLIMGWQNARPLGDRLERIALFHTLGMRVIQLTYNEANLIGDGCLEKRNAGLSNLGIEM FT VREMNRVGIAIDLSHCAEQTCLDAARHSTRPVLLTHANANAVIARPRNKSDAVIKAVAA FT TGGVIGCSIHAYLNWRGQAGQQPTLDDFVANIRYIGDLVGYEHVGIGTDFPAVDTYEAV FT RHVMVMSRTKYAASGGDFSNAFGDVMEARYPVETPTPAQFGGLTEALARGGLSDAQIRG FT VLGGNFVRAFDACWQPA" FT misc_feature 805074..806138 FT /note="HMMPfam hit to PF01244, DE Renal dipeptidase, score FT 0.00011" FT CDS 806164..807132 FT /transl_table=11 FT /locus_tag="BB0773" FT /product="putative exported protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 35.6 FT kDa protein in gbd 5'region precursor SWALL:YGB7_ALCEU FT (SWALL:Q44018) (327 aa) fasta scores: E(): 2e-47, 42.3% id FT in 312 aa, and to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 4.4e-25, 29.19% id in 322 aa" FT /protein_id="CAE31272.1" FT /translation="MNLHRKFGAALAALAGAACVAGAAQAADFPNRTLRIIVPYQPGGS FT TDIVVRKFAELAAPELGQSIIIENKGGAGATMGARTLATATPDGYTLAILPSPVFRMPH FT IQNVGYDPTRDFTYVMMLSGYTLGVAVAADAPYRNWGEFIAHAKAHPGDVAYGTASVGS FT ASNVMMEDIAARNGVSWRHVPYKGESDVIQGVMGGQLTAYAGSTTVLPMVQSGKMRMLV FT TWGGHRSAQFPDVPSLNELDGTPAVYAPFGIAAPKNLPADVRKTLHDTFKRVAQSDAFK FT EVLTQYGQELVYMDGETYAAYAAEQFEAEKAIVKKLGLAGN" FT misc_feature 806164..806241 FT /note="Signal peptide predicted for BB0773 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 26 and 27" FT misc_feature 806188..806220 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 806308..807120 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.2e-60" FT CDS complement(807255..810914) FT /transl_table=11 FT /locus_tag="BB0774" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE31273.1" FT /translation="MNVQVVGETPAAQPYADTGALPFSRLRLLGGFELVVRGVDRTGAF FT PYEKAKLLLAVLALAPGERISRRELAAWLWPELPDNDARARLRHALHALRKVFAQAPEM FT LRIEKDSLSLDAALLDIDALAVLGLHPRLDYSAADKLAAYQGALLAGIGLPDGESMRGW FT RDGSQARIEIELALARSQLTDFHIGQGREQEALVLAKRWVSRWPEDEACHRHLIRLLVA FT LDDREAAMRAFDHCTQVLADRLGAAPSNETWALLEPGQHAMPAIAAKPARIRPGLYRPL FT AVLAINVDIDAATCHDDAERAIDIQQRAMLLIERHALALGGWLAPRATSTVLAYFGYPA FT LSERPAHPAARLADRLAAADLPDGVTLGMGLHAGVALTEPDGQPDAGGLAARQAVRLAW FT QARDRETLVTQACAVRLSEWQLVQTGRRSDDHQALGAPTAHAPARRMFGRNHEFERLTA FT LWNQLKGRERPQTVLLRGVAGIGKTALAQALIEYARQSGGEAYLLAGQEHMAAAPWHPV FT KAWLRAHSGIAETEPGAGRAAHAHLVERLRAHTGLRAAAAERLWQWLHGADDGGRGEAP FT HDIDLTEILTSILLQRTPAGRPQLIVWENLHWMDPASLGLIEHLAGRVVSGPTLLLATA FT RDVYAPVWDHQAITVPPLDREATAQLAASLARTYRLSQGQRAQVQQESMGNPLYAGELA FT RCAAQLALPQGVPSLADRVALQLNLLAEPERHALQMLCLLCGDAPADAGRLAEVLQTAA FT AALATRLETLGRHGLLDGDANQGWRCPPPIAQAVRRYMLREQRGALHQRIAQHLQQNAG FT APHEIARHLQQAGDPQAAQWWRTAVWEVVRRGDYAQAHRYLDNALALRQQIESDAERDE FT FEFACHMVRGELAGNLDGPGSMAAAQAYTLAVRVSPGDPQSRFTALWALWNTCQHSGDY FT DEAVSLSHQLLNMANEHGKSGWRTWALYAMAICELWKGDVIESERLLRQALHGLVFPHT FT DIGPAPILGENAGALIHAMLALTVATQGRGDEAMQSVQTAMAYAQQDNNPLMLATSSMM FT LVKFSYLYEDWAQMGMVAGALKQSMDAHPLRPQFLYALTSCYVDLAAALQGDASVLDNF FT EPALETIRRALPTAEVAGQCLLACALNALGRPDRALLALDRADLLCARFRIAGMMPETL FT CLRGDALLLLGDLEQACAAWRQAIGHANRLAALQYARWAQRRLDANQLVETGQ" FT misc_feature complement(807327..807428) FT /note="HMMPfam hit to PF00515, DE TPR Domain, score 1.1" FT misc_feature complement(807447..807548) FT /note="HMMPfam hit to PF00515, DE TPR Domain, score 8.8" FT misc_feature complement(807807..807908) FT /note="HMMPfam hit to PF00515, DE TPR Domain, score 22" FT misc_feature complement(809466..809489) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(810750..810779) FT /note="PS00215 Mitochondrial energy transfer proteins FT signature." FT CDS 811043..812113 FT /transl_table=11 FT /locus_tag="BB0775" FT /product="putative transcriptional regulator" FT /note="Similar to Agrobacterium tumefaciens transcriptional FT regulator, AraC family atu4132 or agr_l_1441 SWALL:Q8U8G0 FT (EMBL:AE009344) (347 aa) fasta scores: E(): 1.3e-06, 27.88% FT id in 269 aa, and to Caulobacter crescentus transcriptional FT regulator, AraC family cc0713 SWALL:Q9AA93 (EMBL:AE005746) FT (446 aa) fasta scores: E(): 2.2e-05, 25.42% id in 354 aa" FT /protein_id="CAE31274.1" FT /translation="MSKVSMNAFSLPRPLHFVPLPGVPAPWLAGARAPLPAARGRTDGA FT GAAANDALAGAAFDSAAYARPDDALAELGACGLLSLRAHRAGGARRARIHGQTGPGAAA FT LDCQAGGFSVAREAAAIARDARRGALAVVLRAGDVRLAQDGGERAAAAAGDCLLLDLAR FT PWRLDLSDDFAGYLAWTEGAGQPASAGTVAPGASVTAHRLAGMLPALVAGPLSATQLRG FT LHDTVAAALARADGAALGDGHCHPLAQIRAYIDACLHDQGFGYEAVCQRFALSRSTLFR FT LFKAHGGFARYLKMRRMQQCFDLLTSERMRHDNVKAVYLSCGFDNAQQFSRVFSGVYGV FT APSVLRQLTRQRFHAG" FT misc_feature 811829..811894 FT /note="Predicted helix-turn-helix motif with score FT 1506.000, SD 4.32 at aa 263-284, sequence FT FGYEAVCQRFALSRSTLFRLFK" FT CDS complement(812110..812829) FT /transl_table=11 FT /locus_tag="BB0776" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE31275.1" FT /translation="MRRRVRPGPSMQNRNTARRARAQQGFTLVEISVVLVIIALIIGAV FT TVGRDVYRNAVNQRMISDFVQPWAMAYSQYVAATGLPPGDDPANPTGRVNAALDRPLCN FT TDTNPELSTLMLRAGIRPPQGRGPGLEDRYVYQDSQGLPQELQVCLRAANWSEAATTPT FT TYQAVTRNVMELRRLTPELAAMLDRQVDNQIDARFGRLREDSRAGDLTQDGAPWSKTEA FT NLDNGQAATMTGYLLMP" FT misc_feature 812113..830955 FT /note="possible type II secretion system" FT misc_feature complement(812689..812757) FT /note="1 probable transmembrane helix predicted for BB0776 FT by TMHMM2.0 at aa 25-47" FT misc_feature complement(812698..812760) FT /note="PS00409 Prokaryotic N-terminal methylation site." FT CDS complement(812826..814037) FT /transl_table=11 FT /locus_tag="BB0777" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE31276.1" FT /translation="MSMHVSRRARRQRGFSLVEAAISLVILGIITVALWRFIDFSGRNT FT QAGQVDDLLARADRALIGYALAHARLPCPASSTAGMENCGAGEASGYLPYATLGLPEPR FT AGQIRYGVLRGAAAIDLSADTPILTTLRTGMAAHQQPLRMLDSFDGDPVNSPGPRGQDL FT CLRLNAAMKSADHADRLHIDGGAAGAGGQRLQAYALALPVAPGAGHGAGAAGDGRISRG FT PAFAPARGASAVSDQPAGLSASPRELWDRLRCGDAMSASARAHANASLAAHMLTQSTRD FT YYYQLDVLHQLAVASKKLSDAKAVEAGVGVLTGTAGVLNSTSQTLWSFGVQSYLIPLYI FT AAEAHAIANAAKSAAVAIEAADLVDQLARIKDATENLADELITLNENVQAHSLAAARSG FT VFLY" FT misc_feature complement(813933..814001) FT /note="1 probable transmembrane helix predicted for BB0777 FT by TMHMM2.0 at aa 13-35" FT misc_feature complement(813939..814001) FT /note="PS00409 Prokaryotic N-terminal methylation site." FT CDS complement(814034..815071) FT /transl_table=11 FT /locus_tag="BB0778" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE31277.1" FT /translation="MTDRLAMRRQGGWSLLEAATLLAVAGLFGVMLWNLLPVLRQAGGA FT PAQQAALEQARQALTGFVQSHGRLPWPAPPGSNDGLENAAAAGGAQALLPWKTLGLAAD FT PRLGYQVRGALASPAAVSFTPANPALPATELARTQRNDLDFCADLVRLQRADGAAATPP FT HAFAVSAQGDGQGAAPLRQETGVGELAAQLHCPAYLARAAGAAHSAFAAQDLRAIAALY FT ATYSERHYDIRVAERDYADYQVSMAQLTVMLATYQMAHAAAMIAGMTIGTASAVISMGK FT STAVLAAAGYSLKSASDTRDEKDKALDRAMVFRAATHVYQARVEDYARNEIDNAQLVLG FT RGLQP" FT misc_feature complement(814226..814249) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(814967..815035) FT /note="1 probable transmembrane helix predicted for BB0778 FT by TMHMM2.0 at aa 13-35" FT CDS complement(815064..817331) FT /transl_table=11 FT /locus_tag="BB0779" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE31278.1" FT /translation="MSPPMSAPRLSPPPGRPAAQRGISLVWTAVLITVIGLAMTAGYLL FT IQAGAESRQARQQDAALAWAGQLLDGYASAFGRLPCPASTADGLEDCGANPNGKGWLPM FT RTLEQHGALALRPDLQASRPEGTAPAIRYLVYRDAASGLDLARQGAPGADSRYRAKRPE FT YKPSAPAAGDYYVRDGDQSSTADLCQALHAISPLQLPAATSDTWQFNAPDARAGTTAAA FT HVRDPGGRVVNVAYGLAIAGKGSGAGLFGGANATAANTLEWPARAHDAQYGDRVRVAGA FT AQLARTLQCAPVMASLDAMAASRAAMEQVVAQRVENVASASSARTSVLLAYALNTAGLL FT GDAAAIKTAVSNITVSSVFLGNAVAGCASIILAPGFCWQIPIHTAALTTAKVALVQASA FT ALAMHASMYAPIALADAQVKEATSKLDGKYGAPDSEDPAICSMVDAIAEQQDEIRREAD FT ENRAELAKNREEMARLRKIIEDAEKEFRNEPRQGSSETHRQEIARITAARIVAEQAYDA FT VKSEIDSIDQRIKDSKKGMDSMRKQIDDIDQDKAVIKPDGASAEQFEMSKEYWRDVRAR FT LVEQLAKEEQKQRDLEQEKRDKQELLKQRDTQRKSARQAFSALQSRADSVEISKPQPPT FT DADPSPPPIVYFAYCTGQKTSAFLNMCGLLIARYYNASRDYKHIADAEPALEADIADKD FT QQIRDLEKDKANARAVCEAARDGQHADDYDGNLYNPWQQAQKLMNASMHYGSTAPVELR FT ND" FT misc_feature complement(817194..817262) FT /note="1 probable transmembrane helix predicted for BB0779 FT by TMHMM2.0 at aa 24-46" FT CDS complement(817328..818581) FT /transl_table=11 FT /locus_tag="BB0780" FT /product="putative type II secretion system protein" FT /note="Similar to Pseudomonas putida type 4 fimbrial FT assembly protein PilC SWALL:PILC_PSEPU (SWALL:P36641) (401 FT aa) fasta scores: E(): 7.2e-28, 29.68% id in 411 aa, and to FT Pseudomonas aeruginosa general secretion pathway protein F FT XcpS or pa3102 SWALL:GSPF_PSEAE (SWALL:Q00513) (405 aa) FT fasta scores: E(): 5.1e-27, 27.42% id in 412 aa" FT /protein_id="CAE31279.1" FT /translation="MNLYYYRLLLPNGKLRSGLVKLSVERDASARLWLERQYGATVVRL FT RRMPRWAAEAHRSISDVFRPGIRPKELSGMLRDLAVMTGSGIPLLEAVRTVSEENASKR FT SNVARVGRRLLEDLDAGAPISEAVGRQPDIFPETVRNLILIGDETGSMDRMLLESAEHL FT ERIAAMKADTRQALIYPAFVFLAIFGAAGFWIHYVIPNLVGLFQQMNAKLPALTIAVLD FT GAAWLTRHFGKVTLGMAVLFVSLWLAWRYFRPMRRAGFYLLHRLPVSRVIVTSSGLAFF FT AEYMAILIHAGLDVVKSLSILGRAIGDDYYRDRIVAIRQIMERGEGISTAMRHVGGFPP FT IMMRMIAVGEETGTLDRQLSYLAKEYGTRLARVIAMLSEVIKPLVILIAGAMFTLLIVA FT LLLPVYDLVRQSMAARPM" FT misc_feature complement(817361..818356) FT /note="HMMPfam hit to PF00482, DE Bacterial type II FT secretion system protein F domain, score 3e-47" FT misc_feature complement(join(817367..817435,817703..817771, FT 817829..817882,817985..818053)) FT /note="4 probable transmembrane helices predicted for FT BB0780 by TMHMM2.0 at aa 177-199, 234-251, 271-293 and FT 383-405" FT CDS complement(818578..820203) FT /transl_table=11 FT /locus_tag="BB0781" FT /product="putative type II secretion system protein" FT /note="Similar to Pseudomonas putida XcpR protein FT SWALL:Q52292 (EMBL:X81085) (482 aa) fasta scores: E(): FT 8.6e-51, 43.21% id in 405 aa, and to Vibrio cholerae FT general secretion pathway protein E EpsE or vc2732 FT SWALL:GSPE_VIBCH (SWALL:P37093) (503 aa) fasta scores: E(): FT 6.2e-50, 38.51% id in 457 aa" FT /protein_id="CAE31280.1" FT /translation="MVERGLLTPVQLLYAEQKHTVEPLPLSRLLIQNGLAEERVVVATL FT AELQGIEFVAGDVLPEADPQVLAMFNRELCLTHNFLPLRRQDGELQVLLGEAVPARVAA FT LVLQRTSLRCRFMQAEFSLVTRLIRHSYYFAQNPLESLLAREVRRLSDDPDHVFSPDKV FT LDYLLHLAVRERTTDIHITAEASSLHVLFRVDGVLRPMMALPPSLQRLLGYIKLTAEMD FT ISDQRRPQDGSFRAHILDAALTIRVSTIVTEHGERMVMRLLPEHNNLSGLADLGFFAED FT VERLERLFAKPNGLVLITGPTGSGKSSSLHAALRMQSLIERNVLTVEDPLEYRVPGAGQ FT TEVNRRAGYDFTTALRHFLRHDPDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSV FT FGVVPRLQPLGLDSQSIAENLLVVVNQRLVRQNCPFCAAEVAFTAAERAWLGVDEHATG FT RRGAGCGRCRQTGYLGRLPAYEILEIDETLANAIADTAGREAIRSLAHARGFRGMAELA FT RERVRRGQTTAEEVLRVVGDGPAS" FT misc_feature complement(818896..819753) FT /note="HMMPfam hit to PF00437, DE Type II/IV secretion FT system protein, score 2.6e-91" FT misc_feature complement(819085..819129) FT /note="PS00662 Bacterial type II secretion system protein E FT signature." FT misc_feature complement(819283..819306) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(820271..821650) FT /transl_table=11 FT /locus_tag="BB0782" FT /product="putative type II secretion system protein" FT /note="Similar to Aeromonas hydrophila general secretion FT pathway protein A ExeA SWALL:GSPA_AERHY (SWALL:P45754) (547 FT aa) fasta scores: E(): 8.2e-19, 37.69% id in 260 aa, and to FT Vibrio cholerae general secretion pathway protein A vc2445 FT SWALL:Q9KPC7 (EMBL:AE004314) (529 aa) fasta scores: E(): FT 5.1e-18, 32.55% id in 301 aa" FT /protein_id="CAE31281.1" FT /translation="MHTPPFPPTPDAEHYFHTEWLQARQAEAAHCLASGKGFILLTGEI FT GTGKSTFLRQLLAALAERQALRTSLVFNTFLQGEALLAAILKDFGLPAHGSAADHVERL FT NAFLLEQWRAGALCVLCIDDAQNLSLESLELLRLLSNLESGQEKLLQIVLCGQPELAER FT LARPEIRQLTSRIGEHIRLHTLDRAETGRYAAFRLAVSGAAGRIDLSPRAVAALYRRSR FT GNARRIHQILDRALYGVLQQGHGRIDAALVRRAAAEAGMAHATAPRATRRARLPMAAAV FT LAAGVLGTGALYAAGPWRAAPTAPAAAAAQAAPAPAHAFDACLAALAAAGADAAGLLWV FT SDAPAGVAALAQGRPGLCARERDGRTDLAWRAPWRPEDFASGGPHPSVQALQQRLGAAG FT LLATRADGIYGAQTRQALASFQRDHALPATGSPDPATLLLAALALPAEAPALIEEPVTH FT D" FT misc_feature complement(820319..820507) FT /note="HMMPfam hit to PF01471, DE Putative peptidoglycan FT binding domain, score 1.8e-07" FT misc_feature complement(820358..820375) FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT misc_feature complement(821501..821524) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(821685..822587) FT /transl_table=11 FT /locus_tag="BB0783" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE31282.1" FT /translation="MSLIYDALRNGPSATGPGAPVGRGFAGAPARPARGGQFARSLAVA FT VVFGASLGMAGWILAADGLADGAGPARPLPPPAAPDGLPAQAARGPASDAQQLNALLRQ FT MMANQERLERMQAELAAMAPPAAPAVGFPLPAAGMPGAALAAASYEAPAARMEPPSVPA FT GAFIVQDKPARAGAANANAVAAMAEAFDRAAAAGDLGTARRQLDSLRAALPGESLTLLR FT RQAWLHMYGGNDRAAAESYRALLARLPNDENAGLNLAIIEARQGRVADARALLERLRQQ FT HPDSRGVRALQEQIGHEQR" FT misc_feature complement(822408..822476) FT /note="1 probable transmembrane helix predicted for BB0783 FT by TMHMM2.0 at aa 38-60" FT CDS complement(822584..824221) FT /transl_table=11 FT /locus_tag="BB0784" FT /product="putative type II secretion system protein" FT /note="Similar to Vibrio cholerae mannose-sensitive FT hemagglutinin D MshD SWALL:Q56673 (EMBL:L19085) (559 aa) FT fasta scores: E(): 1.8e-19, 24.1% id in 560 aa, and to FT Xanthomonas campestris general secretion pathway protein D FT precursor XpsD or PefD or xcc0670 SWALL:GSPD_XANCP FT (SWALL:P29041) (759 aa) fasta scores: E(): 3.4e-14, 26.76% FT id in 426 aa" FT /protein_id="CAE31283.1" FT /translation="MKSRSFAPLAPLALVLALAGCADTPRSVQNFPKTDHAALQTTSNA FT VAEESAKLLAHNDEMLQRVQRIQPTVPKLDPIAPQYDPLEDKIISVNMHDAKVGQLLWA FT LSDQLRMNLVVDPQVLDMPQRASLYLQRVSAREVFDRILQVFDLHGAVHGNVLTVSLMQ FT ERVFTIEMLGGNTALDIQTGGDVFGGSGSSGGSSTLRGDLKLSGKVGDDADAYKQLAEA FT IGKVLEDTSSGVPGGAPAEKSRYSLDRTTGSLYVRARPAKVRAVEELIRRNQATIRRQI FT QVEAQLIDIELNDGFEFGVDWNLLTNHLSGRYGSGAITANTPAGTQPGSGLLPRSINIP FT AQVIGSAAGVGGGIGFANDSFSVALNALRSFGSVKVLSNPTVRVRNGVPAYLSVGANVR FT YVTEISTTFNNIGGGSSNSSSDVQTDSLFSGVVVGVAPFIHEDGRVELFVHPMQTQVQP FT QSLALVDVGNGNSVTLPIINTKSITTTLNLNNGDTVVLGGLIDQQFTNANKGLPGLSDI FT PGAGVLFDNRSDSHKSRELVIILRVRVI" FT misc_feature complement(822590..823489) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00263, DE Bacterial type II and III FT secretion system protein, score 1.3e-45" FT misc_feature complement(824156..824221) FT /note="Signal peptide predicted for BB0784 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.730 between residues 22 and 23" FT misc_feature complement(824159..824191) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(824235..824999) FT /transl_table=11 FT /locus_tag="BB0785" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE31284.1" FT /translation="MTRRARPSAAGRQQGYTLLEVAIALAVVGLLGAGLYGAQQALYSH FT GSQGQAQAEAERARQAVLAYALRMQRLPCPDTTGNGWASHADGQCSQASGWLPYETLGL FT AGAAAPGTNGRRLAYAALRVPGGPDLFRPSAGAAPVDYSPGGEAALYETLRRAGQMPYD FT GAALRLATARQGVADPCAGATQVNPAFVVIAPATPAAGGALPVFSAAHAALARGAALCA FT IAPAGGRANQNSDAVAAVGTAELLGWLAARAH" FT misc_feature complement(824871..824939) FT /note="1 probable transmembrane helix predicted for BB0785 FT by TMHMM2.0 at aa 21-43" FT misc_feature complement(824898..824960) FT /note="PS00409 Prokaryotic N-terminal methylation site." FT CDS complement(824996..825595) FT /transl_table=11 FT /locus_tag="BB0786" FT /product="putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE31285.1" FT /translation="MRIRVYATLAVLAIAAAGLLAYRQFAPPPEHAAPLEPPLSAERPQ FT PPAPPVLPEPAAASAPPPWAAGNRARPAPAARPAPAAAPAPSAREQAMAEAHARLQRLS FT ASPAPDLAELDRALRDLEQAHGSPEVGGVRLDVLRANLRVAERLSVLGQQLQALQQQPA FT SEPGRAEAMRRIGDEVAALQKQLRTDYVIDTPAARP" FT misc_feature complement(825500..825595) FT /note="Signal peptide predicted for BB0786 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.904 between residues 32 and 33" FT CDS complement(825621..826130) FT /transl_table=11 FT /locus_tag="BB0787" FT /product="putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE31286.1" FT /translation="MKPRHYALSALAAWLLLGGWAAYNYATQPSVRLYAMRAPAAAVPP FT ALLRDIEAADKLAATLQSMAQADAAGAAPARNVALATDAQPGLPRAGAAPGRAGSGESA FT RVVTMIMAGGRGARLAIVDGEYVREGQRLADGTRVARIDMAAVTLEDAIGLQRTYPLRH FT AFKDNP" FT misc_feature complement(826059..826130) FT /note="Signal peptide predicted for BB0787 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.425 between residues 24 and 25" FT CDS complement(826127..827497) FT /transl_table=11 FT /locus_tag="BB0788" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE31287.1" FT /translation="MHIQSILLHHEGAWRLLADGQLTAQAGYPTLARPVVAVSDFGQAT FT LGMTLLEGSPQHAAAVIEKKLRADGMIDQESRILVHHVKHFGKGYQALYTAVTLADWQN FT LTTWSGNQADHCPLVPLAALLWSAVGSGRGVMLRLGRQLIFMAQAKHRMLYASAITFSD FT QEEDLDTAVLNLAASIRDEVGDNPEDVERLLISWTVSLAADSLEMDERLARRFAEQSGL FT ATRLAPAEALRDEAGRAVYSALPALVAAAPVRVAVNDNASKLMYLAERALPWASVASLT FT LAAVLSVQAGSWALKAGKAQQQALQETRDSEPLRAEIGRLAATRAMPEAYPAQRAFLER FT ADALREQTDPVEVLNALRSASAGGIRILRVHVTTTRPQQAGAAGERLLAVDGVLDGSQG FT STPGALLARFVGVLRENGYVATSVDPNAASASSQPPAGFFSYHLRQAPPVALARKQP" FT CDS complement(827502..828008) FT /transl_table=11 FT /locus_tag="BB0789" FT /product="putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE31288.1" FT /translation="MPRFPRLSGRRWQLSRKRSLQLFALSLLVLAVAAYGFHGARQDLD FT HAYAALSLSERQRVQTTQELTVARKEAERADAARRILASAEATGFAAGGWSERRISIQQ FT SAMTRHAVNDLLREASTGTGRLFGAEQFDLSVTRPEDGLFHATSGNNPDVVLTLRGTLL FT FRLDR" FT misc_feature complement(827907..828008) FT /note="Signal peptide predicted for BB0789 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.429 between residues 34 and 35" FT CDS complement(828015..828809) FT /transl_table=11 FT /locus_tag="BB0790" FT /product="putative type II secretion system protein" FT /note="Similar to Escherichia coli CFA/III pilin CofA FT SWALL:Q59393 (EMBL:D37957) (238 aa) fasta scores: E(): 7, FT 25.74% id in 202 aa, and to Escherichia coli hypothetical FT type II secretion protein GspG gspG SWALL:Q8VRM7 FT (EMBL:AF426313) (151 aa) fasta scores: E(): 1, 28.7% id in FT 108 aa" FT /protein_id="CAE31289.1" FT /translation="MNAPQRSRQLQAGFTLVEMAVVLVIIGIILGAVMIGRDAQRNAEY FT TRIRQNFVNQWALAYNNYVQRTGVPPGDDQRAPRLMVNGAKFTGSNGSLSGGDMSRISN FT LPSAICNGGTAPGIDRPVDGDVQLREVMLRAGITLPQGRGQGYEDRYVYLDTNGNPQEI FT QVCFQWNPPGTHSGSGNVMILTGLTPDLARSLSSAIDGNGDASGGSFRQNSVASGAGSQ FT PGVEWKGNNTQTYGSTGDAEKVETGNAEGQVLTLIAHYKMNQ" FT misc_feature complement(828705..828773) FT /note="1 probable transmembrane helix predicted for BB0790 FT by TMHMM2.0 at aa 13-35" FT misc_feature complement(828714..828776) FT /note="PS00409 Prokaryotic N-terminal methylation site." FT CDS complement(828844..829884) FT /transl_table=11 FT /gene="pilT" FT /locus_tag="BB0791" FT /product="twitching mobility protein" FT /note="Similar to Pseudomonas aeruginosa twitching mobility FT protein PilT or pa0395 SWALL:PILT_PSEAE (SWALL:P24559) (344 FT aa) fasta scores: E(): 1.1e-74, 66.37% id in 339 aa, and to FT Xanthomonas axonopodis twitching motility protein PilT or FT xac2924 or xcc2755 SWALL:AAM42027 (EMBL:AE011934) (345 aa) FT fasta scores: E(): 1.6e-83, 70.46% id in 342 aa" FT /protein_id="CAE31290.1" FT /translation="MTIDELLALTVARGASDLHLSAGLPPMLRINGDVVRQDVAALTPD FT ALRAMIHQLMQPAQREEYETRQELDFSIDVEGLARFRVNAFNQQRGPAAVLRTIPSAIR FT TLDELGCPASFKELVRQPQGLILVTGPTGSGKSTTLAAMIDHLNREGEHHILTIEDPIE FT FVHPSRRSLVNQREVGRDTHSFSAALRSALREDPDIILVGELRDLETMRLAMTAAETGH FT LVFATLHTNSAAKTVDRIIDVFPAGEKSMIRSMLSESLRAVIAQVLLKQEGGGRCAAWE FT IMVGTPAIRNLIREDKIAQMVSSIQTGQAHGMQTLDQALQDLLRKKLISAEQALAYARD FT RRSLGL" FT misc_feature complement(829054..829881) FT /note="HMMPfam hit to PF00437, DE Type II/IV secretion FT system protein, score 4.9e-27" FT misc_feature complement(829264..829308) FT /note="PS00662 Bacterial type II secretion system protein E FT signature." FT misc_feature complement(829474..829497) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 830131..830958 FT /transl_table=11 FT /gene="gspO" FT /locus_tag="BB0792" FT /product="type 4 prepilin-like proteins leader peptide FT processing enzyme" FT /note="Similar to Burkholderia pseudomallei type 4 FT prepilin-like proteins leader peptide processing enzyme FT [includes: leader peptidase gspO SWALL:LEP4_BURPS FT (SWALL:Q9ZF70) (275 aa) fasta scores: E(): 5.3e-41, 51.35% FT id in 259 aa, and to Erwinia chrysanthemi type 4 FT prepilin-like proteins leader peptide processing enzyme FT outO SWALL:LEP4_ERWCH (SWALL:P31711) (283 aa) fasta scores: FT E(): 3.7e-37, 49.43% id in 267 aa" FT /protein_id="CAE31291.1" FT /translation="MEIRLPGLDGAGWLAGAAVLGLALGSFLNVVLARLPAMLEYRWRL FT DVQPDGAAACAPPPGLAHPPSRCPHCATALRWRHNVPVLSWLWLRGRCAFCAAPIAARY FT PLVEAATGALCAGIAVLYGPTLLALALMGLAAMLLVLACFDLEHLLLPDCLTLPLLWAG FT LLANAAGMGLATPAQAIAGAAAGYALLAGVAWAFRRRTGRDGLGLGDAKLLAALGAWLG FT WQALPALLLAAGLWGVAAGLLARWRRRAALQPLGPGLAFGAALIVAGAGLMAR" FT misc_feature 830131..830949 FT /note="HMMPfam hit to PF01478, DE Type IV leader peptidase FT family, score 1.1e-78" FT misc_feature join(830158..830226,830485..830553,830653..830721, FT 830782..830850,830878..830946) FT /note="5 probable transmembrane helices predicted for FT BB0792 by TMHMM2.0 at aa 10-32, 119-141, 175-197, 218-240 FT and 250-272" FT misc_feature 830527..830559 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 831107..833470 FT /transl_table=11 FT /gene="vrgS" FT /locus_tag="BB0793" FT /product="conserved hypothetical protein" FT /note="Similar to Salmonella enterica subsp. enterica FT serovar Typhimurium VrgS protein SWALL:Q93IR3 FT (EMBL:AJ320483) (729 aa) fasta scores: E(): 5.1e-85, 41.82% FT id in 593 aa, and to Escherichia coli VgrE protein FT SWALL:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): FT 4.4e-54, 29.18% id in 699 aa" FT /protein_id="CAE31292.1" FT /translation="METILAMAERIVRALTPLPPQALQFRSMHGHEGLSALYEFEVDLL FT AATHTLELKSLLGKPVSLEIETGGAPRYLSGQATRCALVGREGDSARQYVYRVTMRPWL FT WYLTQTSDSKIFQQMSVVDVLRQVLADYPFPVEYRLAGSYRRWEYCVQYQETDFAFVSR FT LMEHEGIYYWFRHESGRHTLVLTDDITQHDECPGAAQLPYYGPDRATVPQEQYVSQWQV FT AEEITPDGFATVDYDFKKPAASLDAQSSNPGAYEPGGLQVYEWLGGYTEPDQGERYSRI FT RLEALQAHGESVTGACNVRAFAPGYLFTLRNHPRPAENRQYLIAQAHYRIQEGGYASGA FT EDAVFDIDFRVLPATVPFRVARATPVPRTHGPQTATVVGQAGEEIWTDEYGRVKVHFHW FT DRYGKKNENSSCWVRVSSPWAGGGFGGIQLPRVGDEVIVDFIGGYPDRPIVIGRVYNAS FT NMPPWDLPGNATQSGFLSRSKNGDRGTANALMFEDSAGAERIWLHAERDMDCEVEANES FT HTVDGNRTTLIGGNDTLTVRGTRTTTIDGLDTETFNAGATRTVTGEVSETTTGNETRTF FT NGDVTETVNGVETRTVNGDWKETITGEMTETRTGDETRTVTGAVTETITGDVTQTITGA FT VTQTQTGAHDITITGDQTSSITGAVSHTVTGAYTQTVTDPVTVNANTSMTVVTPSWTVS FT SASQQAFWTANTLRGTPARLTVVGAAADFWGVRQQVYGGINSQWSTVKIDLAAFKNGSN FT GFESGQAGAQIKAIGAQIKTGGAAVISRVINLFT" FT misc_feature 831227..831259 FT /note="PS00435 Peroxidases proximal heme-ligand signature." FT CDS 833487..833900 FT /transl_table=11 FT /locus_tag="BB0794" FT /product="putative exported protein" FT /protein_id="CAE31293.1" FT /translation="MGSTAWWIAGTLATLAAVGLVALLVRGGARPYETERALAAQLART FT GRPAQAEVLALDRQPGGELYAAPMKLALRYADAMGRARQAELHVYIDSELLVNFMPGQA FT IHVRFDPNDAARIAVDRERSPTEISAAWRRRHP" FT misc_feature 833487..833567 FT /note="Signal peptide predicted for BB0794 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.718) with cleavage site FT probability 0.208 between residues 27 and 28" FT misc_feature 833499..833567 FT /note="1 probable transmembrane helix predicted for BB0794 FT by TMHMM2.0 at aa 5-27" FT CDS 833897..836521 FT /transl_table=11 FT /locus_tag="BB0795" FT /product="putative exported protein" FT /protein_id="CAE31294.1" FT /translation="MKIVKPLRLGLLSRPYRMRGRQRLGLAVFALATLDEQALLQPEAD FT LWSLAGEALGEDGVLDLAVPKPCAEFLVSGAAYTAHQQDRTACMARVRVGELEKTLAVF FT GDRYWLDGKPTPPAPFEAMPLDWAHAFGGPEYADNPHGRGAGDERIAGVRTRRLPNVEP FT ARGRMQRPDQRPEPAGFGPVSPLWPRRFARAGQYHESWLDEGFPGFLDTLDPHFFNAAA FT PDQWWPGQPGLAAGTPYALWNLHPRLPCQQGALPRWRARCLLRRAGETALEDVALRLTT FT AWFFPDRERLLLIYHGATDIAQDDGADIELAMPALDAADAPRPLAHYEAVLAQRLDAQD FT GALHALRDKDLLPAQALGPWDALQAANPMEQPFAVNQRARGAAIRAQLGEQARAHGVDP FT RAYEPPPAPMPAAPQLDDLPDIARHMRQAAQEARIDALHARRRMAEALQARGAELPPAM FT GAAALAAAADGAGRGGPPSLHSHPALATLQELARAQPLGSGADRLDAGSVGARLREAQQ FT QLGRLYLHAAHHQPPAEAARPARAARLRRRVQALMAGSRDLAGLDLTGADLSGLDLRGA FT RCVGTWMEGADLSGALLDDADLSQAVLARAHAEGGSWRRAVLAGANLGQAALDGVDLAG FT ARLSSPVLDGIVLVDCALSASRWNDCHLAGARLERCRFDQAELDTVTFWQGTLLRETGF FT AAARLARVTWLDCELDGLDFAGARLRRCAWVQSQCGAAPNWAGAELQTCCVVETDMPHA FT VFAGATLRECSLRDTVLDHADFTGAALWRCDLSQASLGGASLARARAPDSLFIRADLGG FT ASLAEADLPGALLQKATLTHADLRGANLFRADLGLAVLDDTSDTRGAYTHLANTRPRAR FT HGR" FT misc_feature 833897..834010 FT /note="Signal peptide predicted for BB0795 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.690) with cleavage site FT probability 0.455 between residues 38 and 39" FT misc_feature 835577..835696 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 2.1e-07" FT misc_feature 835697..835816 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 0.061" FT misc_feature 835832..835951 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 0.22" FT misc_feature 835955..836074 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 1.5" FT misc_feature 836153..836272 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 5.1e-05" FT misc_feature 836303..836422 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 5.5e-09" FT CDS 836511..837572 FT /transl_table=11 FT /locus_tag="BB0796" FT /product="conserved hypothetical protein" FT /protein_id="CAE31295.1" FT /translation="MDAETLRDWVRQGRPLVGLDLRAAALQGADLAGALLQDCDLRGAA FT LAGSRWRDSRFSGCRMEQTDWRGADVAQCAFFRCELAEAVFAAAECAGASWVECRAAGA FT DFRATPLHGSHFVQCALDGARLDRAEMREGGFAECTLEQASLAGAALRQTLFFRADLRT FT ADLAGARLERVVFVECDLSGQRLAGQFLGGSQFVEARMDGCDLREASMAQCNFKGASLR FT RACLAGASGARAMFAQADLGGADCSGARMPQSLWADAILDGAVFSGADLAQAMLHRARA FT AGARFDGAGLHYADFSYADLRDADLRGARCLRTQLHRALQEGARWDSRIGVLENDPALY FT EAELWSARRRAGP" FT misc_feature 836580..836699 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 1e-05" FT misc_feature 836775..836894 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 0.79" FT misc_feature 836925..837044 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 0.00034" FT misc_feature 837075..837194 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 0.0028" FT misc_feature 837225..837344 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 5.2e-05" FT misc_feature 837360..837479 FT /note="HMMPfam hit to PF00805, DE Pentapeptide repeats (8 FT copies), score 0.039" FT CDS 837603..838511 FT /transl_table=11 FT /locus_tag="BB0797" FT /product="hypothetical protein" FT /protein_id="CAE31296.1" FT /translation="MFADCQLMGMDLAFPDICKTPPALLPIPYPNFALGPMGIPNVWNV FT LLMAMPAHNLLTTIALSNGDNPGIGMGLISQTVMAQARRITCVPNVLFGCIPATRLTGL FT TVQNTINTVGMRVVPSQLKVVLLGGGGGGGGAARAAKSAKAGKGPGARAGATARRGAGG FT KGGAAGKGGQGGGKAAGSGKSGGGKGAKPRKPGDDPRYRRGKFRKGVRDKAWDQEARRS FT KDGVVRDPVSGKKMKKDEPWDMGHKPGYEHRKHVRSAKERDIDRKQFLDEYNDPSHYRP FT ELPKSNRGHQGELKTDDYFGP" FT CDS 838552..839112 FT /transl_table=11 FT /locus_tag="BB0798" FT /product="conserved hypothetical protein" FT /protein_id="CAE31297.1" FT /translation="MARHALKVFGGTPVVHAYRHDQIDTLSIDMLAVDDSPDDGLVSYS FT TLGLFDLELRHDDGQPMATRVELCADMPEDLQSWANVLATAAFGLMRSGQAVMPGSVLP FT DCVAEYYPDATVPHLYLCVPFSWQDGEFPRCDADGLLVNWLQAVPISETERQFIETAGP FT DAFEDELLEADPDIYDLSRPAVR" FT CDS 839515..840564 FT /transl_table=11 FT /locus_tag="BB0799" FT /product="conserved hypothetical protein" FT /protein_id="CAE31298.1" FT /translation="MPRMTTNMEFADLLKTLTPSLPCGEDLEYDADFLQLQQAAVGRSE FT QQFGATIIPAQAPDWRAVERLALGLLERTRDLRIIAYLTRAWTEMRGLPGYAEGVTLAA FT GTLEQYWDAVHPMLASGGEEDPMPRVNALASLGDPQGCVRGMRSACLLDDVHGRLSLRD FT AEALLDGGRSEADYPGGRTRLIENLRQARLRRDDAALAVGAAAGALRRIQQQATQRLGS FT AWCPDYAQALRALDALLRTWSDLDETAAAPAAAMPAEAHHAAPAPEPQPAPASWHDARI FT ATREDAMAMLAKVSAYFETHEPSHPAPYLIRRVQQLIPLDFHDILRNLAPQGLAQFEAW FT TAREAASQS" FT CDS 840607..841170 FT /transl_table=11 FT /locus_tag="BB0800" FT /product="conserved hypothetical protein" FT /protein_id="CAE31299.1" FT /translation="MATTLKGSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVL FT ADLAGKSNTPQPEVGERKFLDVDIDNFDERMKSVAPRAAFQVANTLTGAGHLNVDITFE FT SIDDFSPATVARKVGALNEMLEARTQLANLLTYMDGKTGAEELIGQVLQNPALLGALAA FT APKPADAGPADADAESAQPGPQAR" FT CDS 841192..842694 FT /transl_table=11 FT /locus_tag="BB0801" FT /product="conserved hypothetical protein" FT /protein_id="CAE31300.1" FT /translation="MTAVARRERAQAESSLAADDLSALLKKEFKPKTEQAREAVEHAVR FT TLAHQALENSGLGLSSDAYRTIQAIIAEIDRKLSEQINLVMHHPDFQQLEGAWRGLHYL FT VTNTETDELLKIRFMCLSKNELGRTLKRYKGVGWDQSPIFKRVYEEEYGQFGGEPIGCL FT VGDYSFDHSPPDVELLGEIARISAAAHCPFIAGASPNVMQMDSWQELSNPRDLTKIFTN FT TEYAAWRSLRESEDARYVGLAMPRFLARLPYGARTNPVDEFDFEEETDGANHDRYTWAN FT SAYAMAANINRSFKLYGWCTSIRGVESGGAVENLPCHTFPTDDGGVDMKCPTEIAISDR FT REAELAKNGFMPLVHRKNSDFAAFIGAQSLQRPQEYHDADASANAKLAARLPYLFACCR FT FAHYLKCIVRDKIGSFRERSDMERWLNDWIMNYVDGDPANSSQETKARKPLAAAEVQVT FT EIEDNPGYYAAKFFLRPHYQLEGLTVSLRLVSKLPSLKQNEG" FT misc_feature 841459..841494 FT /note="PS00213 Lipocalin signature." FT CDS 842770..843237 FT /transl_table=11 FT /locus_tag="BB0802" FT /product="conserved hypothetical protein" FT /protein_id="CAE31301.1" FT /translation="MKIEGANGESKDANHKDWTDIVSFSWGATQPASLATGGGQGAGKA FT SFNDLHVVARIDKAAPAVMKHCASGKHLGKIELSVCKAGGAQVEYSKVTLEDVLVTSVQ FT IAADNGSEAVLVNYAFQAAKVRQQYWEQTESGGKGAESLVAWDIKQNKEIG" FT CDS 843287..844096 FT /transl_table=11 FT /locus_tag="BB0803" FT /product="conserved hypothetical protein" FT /protein_id="CAE31302.1" FT /translation="MQTSVLAMPPRDGGLAGQAAAVQARIRRAPADADLRAQLFQLAAV FT QGDWRRAAEQLQLCARLNPLAQPMANLYLAAIHGELRREAVLAGQAEPGFLAERPCWCE FT PLLQALRAQASDPERAAMLRAQAFDAAQASAGTLEDAAAGQAGYAWICDGDSRLGPVCE FT LILDGSYAWLPFAQVAAVHLPAPQGLCDLVWARAEIALADGAVVRGLVPARYPPSAGQD FT DGLRLGRATCWRPLGQDGYAGEGQKMWLTDAGEFALLDVRALRQQAP" FT CDS 844093..844611 FT /transl_table=11 FT /locus_tag="BB0804" FT /product="conserved hypothetical protein" FT /protein_id="CAE31303.1" FT /translation="MRIADERVARDRLQPSLLDRLVDDEPWRRSEAPEAALLTHAGLRA FT AVLRDLRWLLNTVNLASSQDLAPYRHVPASSVNFGVRAMAGRRMSEIDWVDVETSIRDA FT IAAFEPRILESSVEVRCVSDTRTLEHHNVLSLEIRGMLWCVPHPREFLFRTDIDLESGH FT MDLRDLGGA" FT CDS 844611..846524 FT /transl_table=11 FT /locus_tag="BB0805" FT /product="conserved hypothetical protein" FT /protein_id="CAE31304.1" FT /translation="MDARLLDYYNRELVYMRELGAEFARQHPKVAGRLGMHGTEVADPY FT VERLLEGFSFLAARIHLKMDAEFPRFTQRLLEVVHPHYLAPTPAMAVAQFSPSMNEGTL FT AGGFTLPRGTVLRGGLARGEQTPCEFMTGHALRLWPLRVTAAELTGAPTDLPLARLGLG FT GREAGVASALRLRLEVCGGVSLEELDLDQLVFYLNGPDAPMQRLLELIMCHTVAVLGHD FT SERPVSWINRLPADAVRHEGFADDQALLPTDTRVFQGYRLLQEYFAFARRYLFFSLNGL FT KQGLCTRRAAPAAAAGPAGTRRFDLTLLLSAAAPELEGAISAGNLALHCAPIVNLFPRR FT ADRVAVTPRHHEYHVVVDRTRPLDFEVYSLTRVLGHMSAQRPEQEFRPFYGSFGADADD FT YGAYYSLRREPRLASDSARRHGTRTSYTGSEVYLSLVDRHEAPFADTLRHLGIDALCTN FT RDLALLLPLGGASDFSLRVSAPVGAIKVLHGPSRPAAAMADHGTAWQLISHLGLHYHSL FT TDLDETRGAQTLRELLNLYGNLADPVARKHISGVRHVRVEPMHHRLPVPGPIVYGRGVR FT IDLQVDETAFSGISPYLFGAVLEQFFARHVSINMMSALTLSTPQRGAVASWRPRMGRRP FT AV" FT CDS 846559..847218 FT /transl_table=11 FT /locus_tag="BB0806" FT /product="conserved hypothetical protein" FT /protein_id="CAE31305.1" FT /translation="MQTRNARRLYPVYDPVHLIGTVARREDDGAWTVWCDGRPWRVRRA FT ASCLLVPEEGDTALISGPDAERVYLIAVIEQADAAQATLELEGRVSLRSRTADVSLEAA FT GEVRLRGAQAVRVETEALSVKAGQAACAAARMHYVADEVEGAVGSMRLVGKVYEAVLDR FT LTQLARMAVRQTSEVEHVRAGTLDYQAEQSARVHAPYTMLTADALVKVDAKQIHMG" FT CDS 847215..848309 FT /transl_table=11 FT /locus_tag="BB0807" FT /product="conserved hypothetical protein" FT /protein_id="CAE31306.1" FT /translation="MSMDAAARTDRHAALAVLPPAFWQALAAAPHGHDLFHVLRWIDAR FT AGARAPLGRGASPRHEPVRMRQEPSLAFAPATLAAARAPGEGAAPELSIYSFGLFGPNG FT PLPLHLTEHARERRQHHGDHSLAAFADLFHHRLILLFYRAWADAQSTASLDRGQERFSG FT YVASLLHLGAPSLRRRDSVMDHAKYHMAGHLLRQTRNPEGLCQVLRAFFGLPVGVDEFV FT AQWIRLEAGQRLRLGAGGGLGGGAPLGVAVRDAQHKFRIRLGPLDWQDYLAFLPGSARA FT RQLLHWVRLYVGVEFAWEVRPVLRRDAVRGVRLGAAAPLGLASWLGRRPPRLGDAAELL FT LDYEGRERQAARRAQAFHEKEQAA" FT CDS 848306..848839 FT /transl_table=11 FT /locus_tag="BB0808" FT /product="conserved hypothetical protein" FT /protein_id="CAE31307.1" FT /translation="MIHDMSYDGQILAWPGHGQFRATSGMRGFQHPGQACTPDSGPVPP FT GLYRVLLADRGVALDDGRGVCNLAPAWGIQQVPRGAAAGECEPYWANWGENRARMEPAD FT AATRNRCAPARGGFYLHDSTKGFSHGCIEVEGRIFALLRSYARQRGRNAMILKVAYVAD FT RATNGGTAGDGHAR" FT CDS 848829..849206 FT /transl_table=11 FT /locus_tag="BB0809" FT /product="putative exported protein" FT /protein_id="CAE31308.1" FT /translation="MRADRHAWLLAACLAPALAAAGPLRVENRLAECVRVQPGLRSVEH FT NVVLQRFDLTVVRPIGDCGCKSALVAYQASVVREDGTRGASQSGVFGAMRSGPRTLPLA FT SDAALLGERPVALGLGCAPAD" FT misc_feature 848829..848891 FT /note="Signal peptide predicted for BB0809 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.635 between residues 21 and 22" FT CDS 849230..851839 FT /transl_table=11 FT /locus_tag="BB0810" FT /product="putative ATPase with chaperone activity" FT /protein_id="CAE31309.1" FT /translation="MSDIGRAELFGKLDSLSYRALEDATALCKLRGNPYVELAHWVHAI FT AHAQDSDLHHIARAFELDLGALQQDLVRALDQLPRGAGAVSDLSEHVDHVVERAWALAS FT LRYGAARIRSGHLLLALLRDPSLRGVLAGMSGQFARVVPDLLLQGLPEMTRGSPEARAD FT AAVADAPPDGGGAAGALARYAVDLTAQARAGRLDPVTGRDDEIRQLIDVLMRRRQNNPL FT LTGEAGVGKTAVVEGLALRLARGDVPAPLREVALYLLDIGLLQAGAGVKGEFEQRLRQV FT IDAVQGSERPIVLFIDEIHTLVGAGGAAGTGDAANLLKPALARGQLRTIGATTWAEYKQ FT YIEKDPALTRRFQAIQVHEPDEAGARRMLRGLAGALQAHHGVLLLDEAVEAAVRLSHRY FT IPARQLPDKAVALLDTACARVAVSQQATPAALEDARRRIDALDLELEIAAREARLDAGP FT AERVAGLREQGQAARAEADALAARWEREAALAGQVFGLREQLDAADEQSAPALRAALRE FT AADALARSQGEAPLIHPAVDAAAVAAVVADWTGIPVGRMVRDEAQAVLALADTLERRVV FT GQRHALELIARRIQTARAGLTDPGKPVGVFLLCGPSGVGKTETALALAEALYGGEQNLI FT TINMSEFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPHSVVLLDEVEKAHADVHEI FT FFQVFDKGWMEDGEGRYIDFRNTVILLTANVGADLIASLCADPELAPEPDALAAALRAP FT LRDVFPAALLGRLAAVPYLPLSDSMLAHIVALQFERVGQRLRERHGMDLEVEPAAAELV FT VARCVEVESGARMVDAILSQRVLPQIGRELLGASLQQRTWRRVRVRAVDGEFACEYE" FT misc_feature 849887..850471 FT /note="HMMPfam hit to PF00004, DE ATPase family associated FT with various cellular activities (AAA), score 8.4e-07" FT misc_feature 849902..849925 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 850166..850204 FT /note="PS00870 Chaperonins clpA/B signature 1." FT misc_feature 851057..851080 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(851938..852738) FT /transl_table=11 FT /locus_tag="BB0811" FT /product="conserved hypothetical protein" FT /protein_id="CAE31310.1" FT /translation="MMLTLIVRNPEPGASARRADFHAPGGTLGRDAENCLALPAAPGQL FT CRVQAALRADAQGWRLHNLSGMAAVHINDAALAPGAVRAIQAGDTLRVGAHTLEVSGPD FT APDARPAALPEAAADTPADAPRRGQAGAGAAEDIFSGLFGPGTLPVGGIADAATHPFDL FT DSAQARNAADPLAHLPAGDAAVSRPAGDPLALFDAPHGGADVFADATPSALPAHDPLAP FT LRADPVRDTLLPRHAAGDGPAAHDHAPAGGTFLRPAAPRADQAD" FT CDS complement(852766..853161) FT /transl_table=11 FT /locus_tag="BB0812" FT /product="putative lipoprotein" FT /protein_id="CAE31311.1" FT /translation="MTLRFHATLLGCAILLAGCASPTSERAGEPASDQAERDLQQIRQS FT YSAGAYGDVIRQVAHADALAQAPQSMRIEAWKLQAFSYCVTDHRVLCEAGFRRILQADP FT AFTLEPNEAGHPQWGPAYERARAAPAG" FT misc_feature complement(853081..853161) FT /note="Signal peptide predicted for BB0812 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.813 between residues 27 and 28" FT misc_feature complement(853105..853137) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 853426..853968 FT /transl_table=11 FT /locus_tag="BB0813" FT /product="putative lipoprotein" FT /protein_id="CAE31312.1" FT /translation="MLVAVPTRRALRAAAWIAVAVLAAGCASTASRKAAPYAIELKADP FT RVNPDASGRPSPIQVTLYELRSSAEFEARDFFTLEGDAQAALGKSLIETDQVILQPGET FT RKLSYPGNTEARVVGIVAAYRDLERSPWRIVVPLPQAQNTNIYKFWQFSPNEETVRVAV FT GGQGVQIVDRERSWWPF" FT misc_feature 853426..853527 FT /note="Signal peptide predicted for BB0813 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.607 between residues 34 and 35" FT misc_feature 853471..853503 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 853672..853695 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 854014..855348 FT /transl_table=11 FT /locus_tag="BB0814" FT /product="conserved hypothetical protein" FT /protein_id="CAE31313.1" FT /translation="MALDNKVVWSEGMFLRPQHFQQFERHIEAQLRVRAAAASGCGWGY FT TALEIDRDALALGKLALARAAGVLPDGTPFEFERADEGPPALDIDPAMRDARVMLALPR FT RRAGACEVVYEDGADTLARYCVHEGEIEDSGSVGLEPALVQLGRLRLRLVPETELGDEW FT VALGAARVLERRADHRVVLDEMYIPPWLAADANPALRGYAGELSGLLQARAAALAQRLA FT QPGRGGVSEVADFLLLALVNRYAGALWHARQVPALHPERLFRDWLMLACDLATYTCATR FT LPEVLPDYRHDDLQASFGPLMAELRRSLSVVLEQHAVQIPLHDRGQGVRVAQIADAELL FT RSAGFVLAVHADMPAETVRTRFPAQVKIGPVERIRDLVHLQLPGVAVRALPVAPRQIPY FT SAGHVYFELDKNGEFWRQLERTGALALHLAGEFPGLALEFWAVRD" FT CDS 855369..856649 FT /transl_table=11 FT /locus_tag="BB0815" FT /product="putative outer membrane protein" FT /protein_id="CAE31314.1" FT /translation="MHAANPPFPDFGADAAADPGAASRLRPHEYVISGSNPLVAAANPL FT LDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAA FT ALTPWGGGGVWSAHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGF FT EGRYRVIDNGRTQLETLRQRLLRILRGARGEYPRALSPHWRDTPVQQALRRLPVPLWAY FT GALAAALALALFWGLSWRLGERSDAVFAAVARLKPPTVQIAPAPRPAPAPRLAVFLQPE FT VRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGY FT TDNVPIRTARFPSNWHLSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGR FT SVNRRVEITVMVPPAPHARTPEEGATP" FT misc_feature 856017..856085 FT /note="1 probable transmembrane helix predicted for BB0815 FT by TMHMM2.0 at aa 217-239" FT misc_feature 856281..856577 FT /note="HMMPfam hit to PF00691, DE OmpA family, score FT 6.2e-21" FT CDS 856646..860251 FT /transl_table=11 FT /locus_tag="BB0816" FT /product="putative membrane protein" FT /protein_id="CAE31315.1" FT /translation="MIPRLFGWLFSRGLWSFLGLVALALLVWIAGPLLAIGALRPLESE FT TARVLVIAALFAFALLRLLWRKWREGRLNAQLLGQLRRPARPEAEAAAEPPPSDLRELE FT GRFDEAVELLRKTRFDGGGGRGWLQRYSRQYLYQLPWYVIIGAPGSGKTTALVNSGLDF FT PLAERFGKAALRGVGGTRNCDWWFTDDAVLLDTAGRYTTHESDPTGDEESWRGFLGLLT FT RFRGRQPINGAMLTVSIEDLLAASDAERARHAAVLRRRLQELREQLGIHFPVYVLVTKA FT DLLAGFEQYFASFSREDLEQVWGFTLPYARAQEPDFDLYEAFHAEYRLLQRRLDDALPE FT VLAAEPDEARRALAYLLPQQFAGLQAVLGHFLSDVFASSRFEERLVPRGVYFTSGTQGG FT ETFDQVTGHLKRYLRIESGPAPAAAEEGRSFFLKRLLQDVIFPEAGLAGRNLRWERRYR FT RLHWAGYGLITLAFLGLAAGWLASYGNNVRYLDEVARRVPTVDKLGRDIKITRSGDVLG FT LMPFLDGLWYLPRDAAFEPDAPPLSYRFGLYQGGKMHAAMQGVYRGTLDSVLLPQVARR FT IEAALRAARADDLEYGYEALRAYLMLYEADHYDAEFMHAWLLSDMQGTLPEGYTRRQYD FT LMSLHLRQLAQGGVLASPFPRDEALVRQARDELARHTLAQRAYSRLRRMLAGADDQPPT FT TAVTLGGPQASAVFVRKSGKPLAQGIAALYTYRGYWDVFNPRVTRVAERLRSDDAWVLD FT IAPPGVLDEAARQQLIVDIKRLYLNDYVARWDGYLDDLALAPRSSLLQSIQLARTLSAP FT DSPLVRLTQGVARETTLLRDAGGDERSLADQARDRVSSTREALEQMFGPTGPGAATRAD FT AGDGKLERVVDQHFEPWRRLARADGQGGAPIAATTSLVNELYTYLTAADAALRSASPAP FT ASDVVTKLRAEAGRLPRPLRDVLDDLSTGAAGEVSGVARERLGEDLYATIGLFCRQAIA FT GRYPFAPGSPRDVAPNDLARLFAPNGMMDEFFQKNLVSQIDVSEARWRFKPGMDGTPGQ FT ASALLDSFQRAAAIRDAYFMAGSAEPAFRVSIRPVEMDPAITQFVMDVDGQTVRYAHGP FT QVATSVQWPGPRGANQVRIELTPQAGAAGLSASGPWALNRLLDQARVTRGASPEISLAS FT FDIGGRKVVLEIRAGSVRSPFHLAEMRGFSCPGRS" FT misc_feature 856646..856750 FT /note="Signal peptide predicted for BB0816 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.941 between residues 35 and 36" FT misc_feature join(856682..856750,856781..856840,858023..858091) FT /note="3 probable transmembrane helices predicted for FT BB0816 by TMHMM2.0 at aa 13-35, 46-65 and 460-482" FT misc_feature 857081..857104 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 860248..860982 FT /transl_table=11 FT /locus_tag="BB0817" FT /product="conserved hypothetical protein" FT /protein_id="CAE31316.1" FT /translation="MSGGRAMPGADPDGGVGWYGKIPAAGDFMRRRLSHGLVAWWDKWL FT QYGLAALRQMPAGGAERAYAAAPLWNFAIPAGAGAGAVLLGGMAPSRDRVGRAYPLSAM FT AVVPAQAYQPGLLEDAGDYYRQLGATLLAAVRRGGAAEQLDRQLQAMPLPVAMPPARPA FT PAGQDILDILNAGQAGNAPLAGARGLAAWPELPFCFNPGSHTSYWWTNQADGAALQTYV FT HGGALNATLFLRLFAAPPAWRV" FT CDS 861007..862185 FT /transl_table=11 FT /locus_tag="BB0818" FT /product="hypothetical protein" FT /protein_id="CAE31317.1" FT /translation="MRPSSATDTASVLEAAAPRPLDVDGAAPMPPARVRRVLADLLEQL FT APLHERWRVHGRIAPRTVGLDGDGRARLLVDAAQPAADAEALAHAAGFAAFEQYSDDPG FT QPCGPWTDIYGLSALAYALATGAAPPSALRRCVRDDCAPLARRLDEKRWQALAQAIDAG FT LAPDYRDRPASLAAFARLLDAADRQAEPPPIAPVAPATSATVAVAQAPAPATLPSRAPA FT RRPARTSALAVLAVLAVLAVVLYAALGGRAGDEPAASLAAAPMPAPTPAPEPAPEPPAP FT APEPSPASEPAPLPEPTPTPESVSAPAPQPAPAPAAPPPAAPQPVSVRVDIRPWGEVWI FT DGRSRGVSPPLKQLSLPPGCYAVTVRNPAGPDHRLDLHVAAGQGAAIAHAFE" FT misc_feature 861688..861756 FT /note="1 probable transmembrane helix predicted for BB0818 FT by TMHMM2.0 at aa 228-250" FT CDS 862283..863449 FT /transl_table=11 FT /locus_tag="BB0819" FT /product="putative calcium/proton antiporter" FT /protein_id="CAE31318.1" FT /translation="MSSIHPAPTDSRTLVPRATRIRLAIAWLVTLLFLTLGEGLLAAPT FT APLATLLSVLLVGTIIMAAFVVVREADHLAEQLGEPYGTLILTLSVVGIEVILIAAVML FT GPGEFPTIGRDSIFAVMMIILNLVTGLCVLLGAWRHGAQAYNAQGASAYLAMIALLTGM FT ALLLPNATVSGGPGMFSPAQAIAFSVLTVALYAAFLALQTGRCRHLFIQPAGGAMAIAA FT PASAPRPEAGHGAGGRRTALVRSLVLLAALLPIVLLSHSLAVVVDYGISAAGLPAALGG FT LVIAIIVFTPESVTAVRAARANEMQRVMNLCLGAFVSTVGLTVPAVLAIGLLTGKTVVF FT GISAAETVLFALTLLLSLFTFMGQRTTPVTGLAHLALFAVFGVLLFAP" FT misc_feature join(862343..862411,862421..862489,862526..862594, FT 862637..862696,862730..862798,862826..862885, FT 863006..863074,863084..863152,863213..863281, FT 863291..863359,863384..863443) FT /note="11 probable transmembrane helices predicted for FT BB0819 by TMHMM2.0 at aa 21-43, 47-69, 82-104, 119-138, FT 150-172, 182-201, 242-264, 268-290, 311-333, 337-359 and FT 368-387" FT CDS 863623..865035 FT /transl_table=11 FT /locus_tag="BB0820" FT /product="putative lipoprotein" FT /protein_id="CAE31319.1" FT /translation="MGKATWRQVWERARALAGAAALAVLAGCAAPGAQDPGQARNTARE FT AYIYAYPMLYHYRSMYEQAIDTASPAYLGGFGVFQHRAEPYTPQSVDVATPNVDTLYSR FT AWLDLRAEPWVLSLPAVPKSRYNAFQLVDMYTYNLAYLGTRATGFGSGHYLIAGPGWTG FT PVPKGITQVVRADTDFVAVLGRTALNGPADIKAVHALQARYGLRPLSAYTGTAAPAGAP FT PVDWLPWNEQRASSIGFIAYLNQLLAHTQPQPESEADMMARFARIGVAPGRDFEPARLD FT AATRRAMDAGIVDAQQAIEQGARHAAAPATPASLYGSREQLGGDYLKRAVAAAVGIYGN FT TADEAIYLTIGEDAQGRPLDGARAYELRFAPGRQPPVRFFWSISVYALPARGLAENPID FT RYAIGSRTKGIKRGRDGSLTVYLQHDAPARAHAPNWLPTPAGPFVVVARFYGPQPALRD FT GAWVMPALVPAR" FT misc_feature 863623..863721 FT /note="Signal peptide predicted for BB0820 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.663 between residues 33 and 34" FT misc_feature 863674..863706 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(865043..868006) FT /transl_table=11 FT /locus_tag="BB0821" FT /product="autotransporter" FT /protein_id="CAE31320.1" FT /translation="MLRHLGWLAACCAASAYAADYPGLTLNPGDDFTLQGNDTVNGATA FT VRMSSATLNFGAGPITVNATGTGIFATNGAGALINFLPSSVVTLNVTSPTAGVGILTSS FT SSNTAIDLQADSSLTINAYQGINLAHTPRAAPNRLSIGDGATLRVNASGTGMAPKGLLI FT NNNNSVVVASGGTLGLGTSGGRYARALELSISLTYPDAAADKFTAAPGSNLNLSTTGQD FT SDAFYMLGVGEALMQGNTDIHTTGANSTGFYLYRYGAPTSHLLVAPHAGGHATILTEGQ FT GSHGLWAINGSQAEFANASLQTRGDEAAGLYALTTIGETATQVRAADTAIATAGAQSYG FT VLAQGYGTDVALTRGTVATSGAQAHAVVVAGESRFSADGTAIQAQGDGAMALLMSSDRD FT AQTATVSGGSLRSLRGSAIGIEGGTARVELDGTAVDGATNWLHVADSGALAVLRDVTVP FT GRDPSQTDAPAFPAILHGTRAAGIAATATVVARNADLTGAAITEPGNTSHVTLIDTTWH FT MTGSSTITNLVNDPSLIDFAAPQGGAYKTLTVGNYSGDGTIALNTYLGADDSPSDKLVI FT DGGTASGSSKLRIKNTGGPGAATQAQGILVVDTRNGGTTTATAFSLSEPVVVGAYDYQL FT YRGAQTPEQEQNWYLRSAILPPVDPTNPDQPGEPIPTYRPETPGAVMAPEVARQVGARM FT LDTFHDRMGDQYALLNSAQRKAGWGRVIGQRLTQRWDGDVEPRFKGNIWIAQAGADMLE FT RDRDDGLSDRLGLFGAYGQADGRVDGFVQGEHGKQAGKLRVEAYGLGLYWTRLKHTNWY FT WDNVLMGNYYTGRSRSDRGVAASLEGWGFTASSEAGYSFFPRHDIMLQPQAQLVYQYTS FT LDDTHDAYSTIRYHGGGALTGRIGLLLQGNADQPERIRPYARINLWHRFSHGESVSFGP FT SDSIRTEYGSTSMDLRIGLAAPLNRQTELYASAGYGFDLDGNQRQAYYGNIGVRYSW" FT misc_feature complement(865049..865915) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03797, DE Autotransporter FT beta-domain, score 6.1e-22" FT misc_feature complement(866051..866425) FT /note="HMMPfam hit to PF03212, DE Pertactin, score 4.4e-09" FT misc_feature complement(867953..868006) FT /note="Signal peptide predicted for BB0821 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 18 and 19" FT CDS 868456..869934 FT /transl_table=11 FT /locus_tag="BB0822" FT /product="putative phospholipase D protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3092" FT /protein_id="CAE31321.1" FT /translation="MPPPVDRTASHALDASQARATPLGQGIGDLADAHPGLSGFHALGD FT AQDAFAARMLLARAATRTLDVQYYIWRNDMTGTLLLQALHAAAERGVRVRLLLDDNGIS FT GLDDALAALDAHPNAEVRLFNPFPTRSFKALGYLTDFSRLNRRMHNKSFTVDNQATIIG FT GRNIGDEYFGATDGVLFADLDVLAVGPVVGDVSAEFDAYWASESAWPAGPLLPAPGAQT FT LRALAERAARIEQDPAAGDYMSALRELPFIRELMAGRLPLQWAPARMVSDDPAKGLGKA FT PPAGLLTQQLRNILGEPRRTLDLVSPYFVPTEAGTQAFAALARGGAQVRVLTNALEATD FT VAVVHSGYAKRRKALLQAGVRLYEMRRSYAGPKPQGRGRFGSSGSSLHAKTFGVDGERV FT FIGSFNFDPRSANLNTELGFVIESPDMARHIAATFDQDIPAATYEVRLDDDGSLYWLEQ FT RDGATVRHDSEPGVSLWRRFSVWLFSLLPLEPLL" FT misc_feature 868885..868968 FT /note="HMMPfam hit to PF00614, DE Phospholipase D. Active FT site motif, score 0.33" FT misc_feature 869602..869685 FT /note="HMMPfam hit to PF00614, DE Phospholipase D. Active FT site motif, score 4.6e-05" FT CDS complement(869941..871050) FT /transl_table=11 FT /gene="modD" FT /locus_tag="BB0823" FT /product="molybdenum transport ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3093" FT /protein_id="CAE31322.1" FT /translation="MPSDFPPGQAGIHARFRVDYPEFSLDVDLRLPGRGVTALFGQSGS FT GKTTCLRCMAGLAPVSDGYLDINGEVWLDSAARRAVPTHKRALGYVFQEASLFEHLDVL FT ANLRYGMKRVPPALRRVDLEQATGLLGIGHLLARMPAGLSGGERQRVGIARALLTSPRL FT LLMDEPLAALDVQRKREILPYLERLHDELDIPVIYVSHSPDEVARLADHLVLLEQGRAV FT ASGPLDALLTRLDLPMAMTDDASVVVTGEAAGFDPGYALLTLQLPGGRARLRFVHQAAP FT AGQRLRVVVHARDVSLALQQPREGSILNVLAVRVLEMAPAANPAHVMVRLDADGTPLLA FT RITRYSRDRLALAPGMQAWAQIKAVSLLA" FT misc_feature complement(869947..870138) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03459, DE TOBE domain, score FT 2.2e-11" FT misc_feature complement(870394..870951) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 3e-48" FT misc_feature complement(870580..870624) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(870907..870930) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(871062..871742) FT /transl_table=11 FT /gene="modC" FT /locus_tag="BB0824" FT /product="molybdenum transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3094" FT /protein_id="CAE31323.1" FT /translation="MSLTSADWAAIWLTIELASLTTLLLLVIGTPIAWWLARTRSRLKG FT PVGAIVALPLVLPPTVIGFYLLVAMGPNGYVGQLTQSLGLGTLPFTFAGLVVGSVFYSM FT PFVVQPLHNAFEAIGRRPLEAAATLRAGPWDRFVSVALPLARPGFVTAGILGFAHTVGE FT FGVVLMIGGNIPGKTRVVSVQIFDHVEALEYAQAHWLAGGMVVFSFIILLLLYSRRQRA FT TAAL" FT misc_feature complement(join(871095..871163,871221..871289, FT 871419..871487,871530..871598,871632..871700)) FT /note="5 probable transmembrane helices predicted for FT BB0824 by TMHMM2.0 at aa 15-37, 49-71, 86-108, 152-174 and FT 194-216" FT misc_feature complement(871173..871403) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 1.9e-13" FT misc_feature complement(871209..871232) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(871764..872519) FT /transl_table=11 FT /gene="modB" FT /locus_tag="BB0825" FT /product="molybdate-binding periplasmic protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3095" FT /protein_id="CAE31324.1" FT /translation="MKIRAIPTLWALAATLLAAPALAGEVQVAVAANFTAPMQAIAKAF FT EEDTGNRAVASFGATGQFYAQIKNGAPFEVFLAADDSTPAKLDAEQETVPGSRFTYATG FT ALALWSARAGYVDDQGAVLKQGDFKHLSIANPKTAPYGLAATQVLAKLGLADKLAPRIV FT EGQSISQAYQFVASSNAELGFVALSQIYKDGKLTGGSAWIVPASMHEPIRQDAVILKKG FT QDNATARAFVEYLKSPRSAAIIKSFGYQL" FT misc_feature complement(872451..872519) FT /note="Signal peptide predicted for BB0825 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.974 between residues 23 and 24" FT CDS complement(872655..873539) FT /transl_table=11 FT /locus_tag="BB0826" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3096" FT /protein_id="CAE31325.1" FT /translation="MMPGNAAPRPVHYRHEQVGDVKIFYREAGDPASPAVLLLHGFAAS FT SYMYRDVIAALADGYRVVAPDLPSFGFTESPARDAYAYTFDNITRTMDRFTEQLKLDRY FT ALMVHDYGAPVGWRLASAHPDRVTALVSQNGNAYEEGLAQGWDAIRRYWASPTAENRAA FT LHGFPTPASIKWQYLEGVPDPSLVAPDGYTLEGLQVSRPGNAEIQLDLLLDYASNVQRY FT PQFQAYFRDRQPPLLAVWGRNDPYFLPAGAEAWKRDIPAAEVRFYDTGHFALETHGAEI FT IPAIRAFLDAKVR" FT misc_feature complement(872673..873362) FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 4.5e-24" FT CDS 873564..874208 FT /transl_table=11 FT /locus_tag="BB0827" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3097" FT /protein_id="CAE31326.1" FT /translation="MNLKVTWIRCNLSISNSLVTNMATPATHPPHFIANNLALDFINSA FT FGVGPASHDCLGDDESVLAWLEAAGHVPAGLARPPAGLAELARALREAAARMVRAAQAG FT QGGDAALVNQVLEAGRPARKLAWDDGQGGYTLAECPRDHSAASLLEPVAAALADLLAGD FT ALRHVRRCEAHDCTLVFLDVTKSHRRRWCSMALCGNRMKVAAFRSRRQGAG" FT CDS complement(874310..874432) FT /transl_table=11 FT /locus_tag="BB0828" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3098" FT /protein_id="CAE31327.1" FT /translation="MKQFAVTLLALFGVDAQASVAGPQRLLPILPGEPTRTERR" FT misc_feature complement(874370..874432) FT /note="Signal peptide predicted for BB0828 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.890 between residues 21 and 22" FT CDS complement(874478..874777) FT /transl_table=11 FT /locus_tag="BB0829" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3099" FT /protein_id="CAE31328.1" FT /translation="MRTFTSAALLAAALFGFNAFAGSGELDYPPAGAQGGSLTRSQVQH FT ELAIARAAGQLVFGESQEPAPQLAGSAATRAQVQAELAQARNASAASEYVETGA" FT misc_feature complement(874715..874777) FT /note="Signal peptide predicted for BB0829 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 21 and 22" FT CDS complement(874929..875354) FT /transl_table=11 FT /locus_tag="BB0830" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3100" FT /protein_id="CAE31329.1" FT /translation="MRGSSWAYPAANLAHLLGLVLLVGAMLLLDLRLLGLGRRFALADV FT SAVLTPLAAGGLLLQLASGALLFSADAAPLSGNALMQYKAAGIALGVANALLFRALWGA FT RLAGWDSRPPPWGRLQAALSLLLWLAVATLGRLIAYA" FT misc_feature complement(join(874938..875006,875049..875117, FT 875154..875222,875250..875318)) FT /note="4 probable transmembrane helices predicted for FT BB0830 by TMHMM2.0 at aa 13-35, 45-67, 80-102 and 117-139" FT CDS complement(875424..875777) FT /transl_table=11 FT /locus_tag="BB0831" FT /product="putative exported protein" FT /protein_id="CAE31330.1" FT /translation="MTIRHLLAAGGLAAALAAPAWAHHGWSSYDADQTLTIEAPLTEVR FT YRNPHAEVKVDYQGASWEVVLAPVSRMESRGLAKDALAVGKTVTIVGYPRKDGTHEVRA FT ERITVDGKTIELR" FT misc_feature complement(875712..875777) FT /note="Signal peptide predicted for BB0831 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.635 between residues 22 and 23" FT CDS complement(875845..877944) FT /transl_table=11 FT /locus_tag="BB0832" FT /product="probable TonB-dependent receptor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3101" FT /protein_id="CAE31331.1" FT /translation="MNTLRRLRILGAAATLGGPAAAQEAPAMLEPVRISGTRTGTSVLD FT TPASVDVVDGHELRARNLQVNLSEGLAGVPGLQLQNRQNYAQDLQLSIRGFGARSTFGV FT RGVRLYVDGIPATMPDGQGQTSNIDIGSAGRVEVLRGPFSALYGNSSGGVVQVFTEQGS FT DPPEATGSAAAGSFGTWRYGAKLRGASAADGLDYVLDFNRFTTEGYRDHSAARKNLGNA FT RLGLRMDDGSRLTLSANHVDLTAQDPLGLTREQFEDDPRSAPVAERFDTRKTVRQTQGG FT LLYERAFDTRNDLRVMLYYGQRRTTQYQSIPVAVQQSPTQAGGVIDLGRDYGGADLRWT FT SRQQVAGLPLTLIGGLAYDTMKEQRRGYDNYTGPPAAPTGLGVKGALRRDETNTVYNLD FT PYLQASWQFAERWTLDAGLRYSTVRFDSDDHYQAPGNGDDSGRATYRKALPVAALRYAA FT NENLSLYASYGRGFETPTLNELSYRPDRAPGLNFGLRPAVSTNLEAGVKWRTGAGLVTA FT ALFHTQTDDEIVSAGSLGGRATYRNAGRTRRDGVELQWNGEFARHARAQLAYTWLDARY FT RDDGPGAIRAGNRIPGVAAQALYAALSWAPPQGWQAGIEARYLGRIEVNDANSEAAPAY FT FVAAASAGYAWRAGAWSWNAYARVDNLFGRRYAGSVIVNEANQRYYEPAPGRNGSIGLS FT AAYTF" FT misc_feature complement(875854..876183) FT /note="HMMPfam hit to PF00593, DE TonB dependent receptor FT C-terminal region, score 1.7e-10" FT misc_feature complement(877879..877944) FT /note="Signal peptide predicted for BB0832 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.977 between residues 22 and 23" FT CDS complement(877941..878444) FT /transl_table=11 FT /locus_tag="BB0833" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3102" FT /protein_id="CAE31332.1" FT /translation="MAILRQYGADRQLRLAICPNGLETAMDHALDALDRRLLALLRADA FT RLPTATLARQLHVSRGTVQNRMARLERSGIVAGYTVRLRNEDEHGIRAITLIEVRGAAT FT DAVVAALRRIPEALQVHSTNGRWDLVVELRAADLPAFDRVLRDLRSIDGVANSESNLLL FT TAHR" FT misc_feature complement(877986..878285) FT /note="HMMPfam hit to PF01037, DE AsnC family, score 8e-07" FT misc_feature complement(878241..878306) FT /note="Predicted helix-turn-helix motif with score FT 1449.000, SD 4.12 at aa 47-68, sequence FT LPTATLARQLHVSRGTVQNRMA" FT CDS 878523..879764 FT /transl_table=11 FT /locus_tag="BB0834" FT /product="ornithine aminotransferase" FT /EC_number="2.6.1.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP0539" FT /protein_id="CAE31333.1" FT /translation="MNMPAPAATRRDRIEDELGAHNYQPLDVVLARGSGVWLYDTAGRR FT YLDCLSAYSAVNQGHCHPRILAAMVEQAQRLTLTSRAFRHDQLAPLYEDLARLTGAHKV FT LPMNSGAEAVETALKAVRKWGYEARGVPAGQAEIIVCANNFHGRTLGIVGFSTDPDARG FT GYGPFAPGFTVVPFGDFAALQAAVTPRTVAFLVEPIQGEAGVILPPPGYFRQVRKLCSE FT RDIVLILDEIQTGLGRTGAFLAEAHEGIEADVTLIGKALSGGFYPVSAVLSNQAVLGIF FT QPGQHGSTFGGNPLACAVARAALRVLHDEGMIDNAREQGAYFMQRLRALPGPVREVRGR FT GLMLALELEPDAGPARAYCERLMARGMLVKDTHGQTLRLSPPLIVTREQIDWACAQLAH FT VLAHSAPGSSGGPS" FT misc_feature 878571..879737 FT /note="HMMPfam hit to PF00202, DE Aminotransferase FT class-III, score 6.9e-161" FT misc_feature 879201..879314 FT /note="PS00600 Aminotransferases class-III FT pyridoxal-phosphate attachment site." FT CDS 879761..880705 FT /transl_table=11 FT /locus_tag="BB0835" FT /product="arginase" FT /EC_number="3.5.3.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0538" FT /protein_id="CAE31334.1" FT /translation="MIAASFPHGVSLIGAPTDIGAGQRGASMGPEALRVAGLVRLLERR FT GLQVTDRGNLQGAPNPWRPPANGYRHLNEVIGWNQLVHDAVSAELRQERLPILLGGDHS FT LAIGSISAVARHCRASGRKLRVLWLDAHADFNTNRLTPTGNVHGMPVACLCGNGPAALT FT GMAGRTPAIEPGWVRQIGIRSVDEGERNLVYDAGLEVYDMRYLDEVGMRAVMEAALAGL FT DPQTHLHVSFDVDFLDPELAPGVGTTVPGGPTYREAQLCMEMIADTGLMRSLDIVELNP FT ALDVRNKTAQVAVDLVESLFGKSTLMRRRPGSA" FT misc_feature 879776..880675 FT /note="HMMPfam hit to PF00491, DE Arginase family, score FT 3.5e-92" FT misc_feature 880055..880096 FT /note="PS00147 Arginase family signature 1." FT misc_feature 880136..880162 FT /note="PS00148 Arginase family signature 2." FT misc_feature 880451..880516 FT /note="PS01053 Arginase family signature 3." FT CDS complement(880722..881531) FT /transl_table=11 FT /locus_tag="BB0836" FT /product="two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0176" FT /protein_id="CAE31335.1" FT /translation="MNSTLDVIFLVRDDAAHQKQLEHLAYLGFKIRACTELIEVYDNCA FT AHACPLVILSAPLADIHIAAARLRAIDRRVGIIAMEAFADSESRIRTLLCGADACLPTD FT VSGLELAAVLQALLRRIVALAPLPETAELARGSEPGIDLGMEALALEPAMAPPDSKWHL FT TNQGWTLVSPGGRTLGLTTGEREFLSRLMRAPERKISREALIADDLSAPGAADQGAQRS FT RFVDVMISRLRRKAAHHQMPLPIRALHGWGYMFAAEVADEAGARGRH" FT misc_feature complement(880776..881006) FT /note="HMMPfam hit to PF00486, DE Transcriptional FT regulatory protein, C terminal, score 0.00045" FT misc_feature complement(881166..881510) FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 0.022" FT CDS 881844..882371 FT /transl_table=11 FT /locus_tag="BB0837" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0177" FT /protein_id="CAE31336.1" FT /translation="MPIRPFTRACLVAALGAVLAGCASNTGQAQAEGAAAANAATSADS FT FAQTTWELVRWTKADGGYRVIPHGDNGEPIFLTFFAQGKQYRVSGFAGCNRYTGAYRLR FT DGKLQITAPASTRMACPQPERARLEADYLRALAQIRSFTLDSGGAPRHLTFNVQGGDVL FT DFMRRQDPPTPE" FT misc_feature 881877..881909 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 881949..882314 FT /note="HMMPfam hit to PF03724, DE Domain of unknown FT function (306), score 5.8e-13" FT CDS 882463..883278 FT /transl_table=11 FT /locus_tag="BB0838" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0178" FT /protein_id="CAE31337.1" FT /translation="MSAISPGRVALSFSLLLALAACAADPAGGGASRAQAPERHSDMLA FT QTNWELARWTRPGGALRPVPHGGAGKTAPITLSFTHQRGAARLAGFAGCNNYSGQYTIA FT NGLLIVTAPPVSTRMACANADLARLEQDYLAGLTAVTASRLDHDTRPQRLTLALRSGDV FT LDFARRADPLAGGQPGAAKLVYVASSKAPCSAGAGRAQCYQVRDSASQPWQLWYGDITG FT FAFQPGIEYRLRVVEVRDPNPPADASGVRWVLDHVVEQRVAAPRPAPAP" FT misc_feature 882463..882531 FT /note="Signal peptide predicted for BB0838 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.771 between residues 23 and 24" FT misc_feature 882496..882528 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 882577..882936 FT /note="HMMPfam hit to PF03724, DE Domain of unknown FT function (306), score 2e-14" FT CDS 883339..884073 FT /transl_table=11 FT /locus_tag="BB0839" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0179" FT /protein_id="CAE31338.1" FT /translation="MTAVVNIAAYKFVSIANPADLREPMLEQAGQRQLKGTVLLAPEGI FT NLFLAGAADAIEGFLRWLRADARFADLQAKYSESARMPFRKLLVKVKREIIRMDHPAIR FT PEAGRAPAVDAATLRRWLAQGRDDQGRELVMLDTRNAFEVEVGTFRGALDWRIERFTQF FT PQAVRDNQAALAGKTVVSFCTGGIRCEKAAIYMAEAGIEHVYQLEGGILKYFEETDGAG FT FDGACFVFDERVALDAALAPQA" FT CDS complement(884111..886189) FT /transl_table=11 FT /gene="metG" FT /locus_tag="BB0840" FT /product="methionyl-tRNA synthetase" FT /EC_number="6.1.1.10" FT /note="ortholog of Bordetella pertussis (BX470248) BP0180" FT /protein_id="CAE31339.1" FT /translation="MSRTLFVTTALPYANGSFHIGHIMEYIQADIWVRSMRMAGHTVHF FT VGADDAHGAPIMLKAEKEGITPQALVARYAAERPRYLDGFHIRFDHWHSTDTPENVALS FT QEIYRALKSEGLIETRSIEQFYDPVKGMFLADRYIKGECPRCHAKDQYGDSCEVCGAVY FT APTELINPYSALTGAAPVLKSSDHFFFKLSDPRCVEFLQQWTTGANRQGVKHLQAEVQA FT KTREWLGGDDGEAKLGDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKSYCAV FT KGLDFDALLDPAGPTEQVHFIGKDIIYFHALFWPAMLKFAGRKTPDQLNVHGFITVSGE FT KMSKSRGTGISPLRYLEIGMDAEWLRYYMAAKLNARVEDMDFNPEDFVARVNSDLVGKY FT VNIASRAAAFITRHFDGELAYDGDTDALAAEFAQQAESIRAAFEAREYNRAVREIMAHA FT DRINQAFDAAQPWVMAKGIGAADAATRARLQDICSRALAGFKALSVMLAPVLPALASRV FT ARELFGANADFAWGDAQQLPQRVAPFKHLMQRVDPKLLDDLFEPPAAEASAPAALPGGE FT ALADTITIDDFAKIDLRIARIVNCEEVEGSTKLLRLTLDVGEGRHRNVFSGIKSAYQPQ FT DLVGKLTVLVANLAPRKMKFGVSEGMVLAASHADEKAEPGIYVLEPWPGAQPGMRVR" FT misc_feature complement(884120..884416) FT /note="HMMPfam hit to PF01588, DE Putative tRNA binding FT domain, score 4.4e-31" FT misc_feature complement(885035..886186) FT /note="HMMPfam hit to PF00133, DE tRNA synthetases class I FT (I, L, M and V), score 5.5e-06" FT misc_feature complement(886121..886156) FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS complement(886439..886711) FT /transl_table=11 FT /locus_tag="BB0841" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0181" FT /protein_id="CAE31340.1" FT /translation="MVNTLFRFFSAALFALLGLIGMMMALVFMASTAIAVGVLYLVAKV FT RGKPFGVRAYWSQRQAARPGPFQAASAPFGQPRGDVIDVEAREVR" FT misc_feature complement(886586..886654) FT /note="1 probable transmembrane helix predicted for BB0841 FT by TMHMM2.0 at aa 20-42" FT misc_feature complement(886607..886711) FT /note="Signal peptide predicted for BB0841 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.867 between residues 35 and 36" FT CDS 886810..887898 FT /transl_table=11 FT /locus_tag="BB0842" FT /product="putative iron sulfur binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0182" FT /protein_id="CAE31341.1" FT /translation="MMSITIEQIRGALAGVADPQTGLELNVCVKDRDIHLAADPAALTI FT ELGYPAGGVADSVRALAGAALAAAGLGAVRVAVTWNIIAHAVQPGLKPLPQVRNIIAVA FT SGKGGVGKSTTAVNLALALAAEGARVGLLDADIYGPSVPAMLGLAGRPESRDNKTMEPL FT VGHGLQANSIGLLIDADAPAIWRGPMVTQALEQLLRQTNWRDLDYLVVDMPPGTGDIAL FT TLAQKVPVAGAVIVTTPQDIALLDARKGLRMFQKVHVPILGVVENMAVHICPQCGHAEH FT IFGAGGGRRVAEQYEVPWLGSLPLQRAIREQTDAGNPTVAAEPDGEVAGIYRDIARRVA FT ARIAALPRDMAGKLPAVVVRPA" FT misc_feature 887125..887148 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 887416..887466 FT /note="PS01215 Mrp family signature." FT CDS 887902..889806 FT /transl_table=11 FT /locus_tag="BB0843" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0183" FT /protein_id="CAE31342.1" FT /translation="MRRILRVCPALLFALAAGQVHAKLPEVIVDPGGVPPAALQAINSA FT VDAIARLSEDQDGGEIDRLRRRARDATLAALATQGYFTPTVTLTPGTDVGGETWDIAIE FT PGPRARVASVDLKFTGRVARPEYAARIQKWRDDWALKAGQPFINGDWNKAKSGLLDAVS FT TRDFLLAHMTHSLAEVDAETAQVRLSVEIDSGPAVRMGALQTDGLQRVPESLVRRYVKY FT SEGAAYDQDKLDQWQQELQSTAFFRGAFVTLDQGARGGQDDVKVTAPGAGARAPGSSGL FT ASVAPAGDAEVAGGPTAAAPVLDSQGEITLPVDVRVVEAPPKRLAVSLGVDDEAGVRFE FT TIYRQNVVFGQPVTMETGLGVDRLRQRAYLDFNLPPDERGRKDSFGLLFDHSDVQGLDV FT TRYALGVTRLQERKGAGDSRVEYETRWGGLLAHDHVKIDGGDEYDLPTATLTAEWLRRD FT VNSKYDPREGNLIAVGGGVGATLDDGQPYMRLRLRGQKWWPIGKLDVLTLRGEVGRLWS FT NGRTRVPDDFGFRTGGARSIRGYRYQSIGVEQDDAIVGAPTLAVASVEYDHYFNERWGI FT GVFVDAGDAAESFGDMDIAVGYGVGARVRTPAGPLFLDVAYGQRERDLRLHFSLGIAF" FT misc_feature 887902..887967 FT /note="Signal peptide predicted for BB0843 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT CDS 889803..893477 FT /transl_table=11 FT /locus_tag="BB0844" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0184" FT /protein_id="CAE31343.1" FT /translation="MSKIWGVVRHILVWWVPGVAMLAALACGFVFWTVASQNGTRLLLD FT TVARQLDGEIAGVRGSVLRGLRVDRIRLSVADVDVAVDDLRLDVAWRALGQRLLHVREL FT AATRVEVGLHTPATPPPDSDEPFALRLPVELALDRLSLGEFVLRQDGEPLPVSAGELQA FT SLAAGRHGARLTLDSLRVTHAVGTLRAQGRLDVASLAQPWPLTASLDLQAQGSGPESPL FT CLAPLLDARDKTAKDKAAKDKGKDKDKGKDKGKDKDKGKDKGKDKGKDDAGEKPDEPAD FT PCGLALQVQAQGTLEQLEAELTGAGQGLALEARAGLLPQAPFPLRTASLKLTREDKSSL FT AATLDWQPQPGQPGRDRVVATFEAERLDLQRLAGEAIPPAMLSARGGLDAEVDDLSRLH FT RATLTLDVTKGSSWNRHPLAGKVAASVSALGDPPGAFATAAPAQPHALPGGLRVDQLDV FT DLQLGPNRVRAQGKLDERAGALKLDAQAPRLDAFWPGIPGAASVKAALDGALARHRGRI FT EAAYTPADARARVLGRARAQAQLEFSGGWGAGPAAEGAAAGWRGSVSRLTADSAGFALA FT LERPVTLAYVPEALAPQWQWQVGATTLALTFPDKQRVALAHAASRGGAGRWETAGRADA FT LVITAAMVRQILVALDPEAVARAERDSGSPVNAPVPAAQRRISLDASWDLKFAGALAGK FT VRVARRDGDLRIPGDPPIPLGLRTLVLEANATPTGGQASRLDARLDMATARMGAINGTA FT SATLGGLALDPRQPIRVALDADVTDLAWLGLFVGDTLEVGGMLKANVRAQGSLDGKWNA FT SGTVNGDKLRVVRIDDGVRLIDGTLRARLQDDRVILDSLRFPASLRVMPAEWRTREWVS FT TNPDAKGGYLEATGQWELSAARGQVRLQLHRFPALQRSDRYGMVSGVVTLDAALPRISI FT NGDITADAGWVSLEILQGVPTLDDDVKVVRAGQKNAQGDGPPLQIDMNLKVDMGPRFYI FT TGMGLDAGLLGSIQIRLQEGRLTGYGALRTRGGGIEAYGQKLRLRRGTLTFQGRLDNPL FT LDIEALRTGEQVEAGVRVAGTAQRPRIDLVSYPDVSDVEKLSWLVLGRGPDASGGDTAL FT LLSVGTALLGGGQPFYKQFGLDDVSVRSGAIGSSGSLLPDRTVAAGVNRDSDADLATQF FT LVASKRFANGITLSVEQALAGSETVGRASYRLARGLSLDLKAGSVNGIALVYRILLDD" FT misc_feature 889803..889880 FT /note="Signal peptide predicted for BB0844 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.928) with cleavage site FT probability 0.359 between residues 26 and 27" FT misc_feature 889836..889904 FT /note="1 probable transmembrane helix predicted for BB0844 FT by TMHMM2.0 at aa 12-34" FT misc_feature 889851..889883 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 893538..894101 FT /transl_table=11 FT /gene="dcd" FT /gene_synonym="dus" FT /gene_synonym="paxA" FT /locus_tag="BB0845" FT /product="deoxycytidine triphosphate deaminase" FT /EC_number="3.5.4.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP0185" FT /protein_id="CAE31344.1" FT /translation="MSIKSDRWIRRAAEAGMIEPFEPGQVRTAGGNRIVSYGTSSYGYD FT VRCADEFKIFTNINSTIVDPKQFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVL FT TICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKIYAGEGCAQMLFLESDE FT VCETSYRDRGGKYQGQRGVTLPRT" FT misc_feature 893709..894095 FT /note="HMMPfam hit to PF00692, DE dUTPase, score 0.0031" FT CDS complement(894109..894531) FT /transl_table=11 FT /locus_tag="BB0846" FT /product="conseved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0186" FT /protein_id="CAE31345.1" FT /translation="MPAPATVASPVVTCLRYRNASAAIEWLVHAFGFEAQRIVPGPADT FT IVHAQLTLGSGMIMLASVTDTPFSRYMKQPDEVGGVETQSVYLVVADPDQAYRDAQAAG FT AEILIDIADADYGGRGFSCRDPEGHIWSVGSYDPWQ" FT CDS complement(894559..894978) FT /transl_table=11 FT /locus_tag="BB0847" FT /product="putative lyase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0187" FT /protein_id="CAE31346.1" FT /translation="MQAQVLINIDVPDAARAALFYERAFGLRPRRRLGPQAIEMAGAAV FT PIYLLEKATGSQAATGTSQGRDYARHWTPVHLDFVVDDCDRAVATAVAAGAMLEDPPHS FT HAWGRIAHLSDPYGNGVCILQFLGEGYDALAAAAP" FT CDS complement(895007..895525) FT /transl_table=11 FT /locus_tag="BB0848" FT /product="putative acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0188" FT /protein_id="CAE31347.1" FT /translation="MNLSTIRPLTPEDAAEFQRVRLAALREAPEAFGSSYEEESVDTIA FT QWRARLAPREGYVLLGAFVDGALAGVGGVARGHTMKQRHKAEIWGIYVVPAQRRGGLAR FT QLTEALLARAARMTGVRHVLLSVGADNGAAHALYASLGFAEYGREPDAMLVGGRLLANI FT LMIRPLAAR" FT misc_feature complement(895094..895348) FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 3.5e-14" FT CDS 895578..896075 FT /transl_table=11 FT /locus_tag="BB0849" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0189" FT /protein_id="CAE31348.1" FT /translation="MKIREKRGCFAAQEPQMFGFRRKDTQQYDQEAQDAFVERVAAAAR FT DFVAAVPAGAGLDYSPASIAALDAVLEQAHLGALALDPVQRVGAAAYLYEVARRRHGGL FT YEVCDDDDPVVLVTGEPEFDVCLCAIAKVERRIDAGPQEDLRPFFGRYEQAVAARRPDI FT IR" FT CDS 896230..898500 FT /transl_table=11 FT /locus_tag="BB0850" FT /product="probable orn/arg/lys decarboxylase" FT /EC_number="4.1.1.19" FT /note="ortholog of Bordetella pertussis (BX470248) BP0190" FT /protein_id="CAE31349.1" FT /translation="MKFRFPIFIIDEDYRSENASGLGIRALASAIEAEGVEVIGVTSYG FT DLSSFAQQQSRASAFILSIDDEEFDVDSPEDVAGAIKNLRTFIGELRFRNADIPIYLYG FT ETRTSEHIPNDILRELHGFIHMFEDTPEFVARHIIREARSYVDGLPPPFFRELVKYAQD FT GSYSWHCPGHSGGVAFLKSPVGQMFHQFFGENMLRADVCNAVDELGQLLDHTGPVAESE FT LNAARIFHADHCFFVTNGTSTSNKVVWHANVAAGDVVVVDRNCHKSILHAITMTGAIPV FT FLRPTRNHLGIIGPIPLDEFDPENIRRKIEANPFAREALNKKPRILTLTQSTYDGVIYN FT VEMIKEKLGTYVDTLHFDEAWLPHAAFHEYYRDMHAIGPDRPRSQDAMVFATHSTHKLL FT AGISQASQIIVQESESRKLDRNLFNEAYLMHTSTSPQYAIIASCDVAAAMMEPPGGTAL FT VEESIREAMDFRRAMRKVASEFGKDDWWFKVWGPNRLAPEGIGHRDDWVLESGDHWHGF FT GDLAPGFNMLDPIKATIITPGLDMSGSFGESGIPAALVSKYLAEHGVVVEKTGLYSFFI FT LFTIGITKGRWNTLLTALQQFKDDYDRNQPLWRILPEFCRGHRRYERMGLRDLCQQIHE FT AYRERDVARLTTEMYLSDMVPALKPSDAFARMAHREVERVEIDQLEGRVTGVLLTPYPP FT GIPLLIPGERFNRTIVQYLQFAREFNERFPGFETYIHGLADEEGPDGAKRYYVDCLKDA FT GEQ" FT misc_feature 896680..898038 FT /note="HMMPfam hit to PF01276, DE Orn/Lys/Arg FT decarboxylase, major domain, score 3e-185" FT misc_feature 897403..897447 FT /note="PS00703 Orn/Lys/Arg decarboxylases family 1 FT pyridoxal-P attachment site." FT misc_feature 898060..898452 FT /note="HMMPfam hit to PF03711, DE Orn/Lys/Arg FT decarboxylase, C-terminal domain, score 4.3e-30" FT CDS 898544..899776 FT /transl_table=11 FT /locus_tag="BB0851" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0191" FT /protein_id="CAE31350.1" FT /translation="MSSREYPVSMFDVAVIGAGAAGMMCAAVAGQRGLRVVLIDHAAKL FT AEKIRISGGGRCNFTNLGAGPANFLSDNPHFCRSALAGYTPQDFLGLLRRHRVHWHEKH FT RGQLFCDDSSETIIEVLRAECGQGGVAWRMPCRVDEIARREGGGFTLRTSTGAIDARAV FT VVATGGMAIPQLGATDYALKVARQFGLKVVEPRPALVPLTFDPAQWQPFAALSGVALEV FT TLSTGQGKGRAAFLEDLLFTHRGLSGPAILQISSYWKPGEPIVLDLAPGRDLAAELIGA FT KPGNRQQLHTVLAGLWPRRLADTWLDVAGRAVGADLAAARLADVPDRTLRALAALIHDW FT RLVPSGTAGYKKAEVMRGGVDTRALDQKSMQARGVPGLYFIGEAVDVTGWLGGYNFQWA FT WASGYACGNAL" FT misc_feature 898544..898630 FT /note="Signal peptide predicted for BB0851 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.778) with cleavage site FT probability 0.687 between residues 29 and 30" FT misc_feature 898580..898633 FT /note="1 probable transmembrane helix predicted for BB0851 FT by TMHMM2.0 at aa 13-30" FT misc_feature 898706..899755 FT /note="HMMPfam hit to PF03486, DE HI0933-like protein, FT score 6.3e-131" FT CDS 899822..900514 FT /transl_table=11 FT /gene="sodA" FT /locus_tag="BB0852" FT /product="superoxide dismutase [Mn]" FT /EC_number="1.15.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0193" FT /protein_id="CAE31351.1" FT /translation="MVNGNDYHLSLPNANAGDRMPYVLPALSYAYDALEPHIDARTMEI FT HHTRHHQTYVNGLNAALEGAGLDSEEPVEQLLRRIPALPPGIHGAVRNHGGGHANHSLF FT WTVMSPSGGGRPDGRLAADIQAQLGGHDAFQAAFTQAALGRFGSGWAWLTVTPAGRLRV FT DSSANQDSPLMEGNTPILGLDVWEHAYYLQYQNRRPEYIEAFYRVVDWAEVARRYEIAL FT AELGREAA" FT misc_feature 899879..900148 FT /note="HMMPfam hit to PF00081, DE Iron/manganese superoxide FT dismutases, alpha-hairpin domain, score 7.1e-44" FT misc_feature 900158..900490 FT /note="HMMPfam hit to PF02777, DE Iron/manganese superoxide FT dismutases, C-terminal domain, score 4.7e-61" FT misc_feature 900371..900394 FT /note="PS00088 Manganese and iron superoxide dismutases FT signature." FT CDS 900511..901404 FT /transl_table=11 FT /locus_tag="BB0853" FT /product="probable metal transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0194" FT /protein_id="CAE31352.1" FT /translation="MNTHSRHRVRPALTSVSAMTLAVLVACLACYQLWEFLDRRWPHVA FT LAMAGGMVAAGATALGAVPVLFSQTLSQRVQDCMFGFGAGVMLAASAFSLVAPGIAAAG FT AQGYGPWGAGILVGAAILLGGAVLLASDRLLPHEHFIKGKEGRASRTLRRTWLFVFAIM FT LHNVPEGLAIGVGYAGSDSLRGAALATGIAIQDVPEGLVVALALLAAGYGRAFSVALGM FT LSGLVEPLGAIVGAAVVGWSAAMLPWGLGFAAGAMLFVISHEIIPESHRKGHEVPATAG FT LMLGFVLMMLLDTALG" FT misc_feature 900511..900597 FT /note="Signal peptide predicted for BB0853 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.671 between residues 29 and 30" FT misc_feature join(900547..900615,900643..900711,900748..900816, FT 900829..900897,900976..901044,901072..901140, FT 901159..901227,901240..901308,901327..901386) FT /note="9 probable transmembrane helices predicted for FT BB0853 by TMHMM2.0 at aa 13-35, 45-67, 80-102, 107-129, FT 156-178, 188-210, 217-239, 244-266 and 273-292" FT misc_feature 900559..900591 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 900958..901389 FT /note="HMMPfam hit to PF02535, DE ZIP Zinc transporter, FT score 3e-24" FT CDS 901799..902899 FT /transl_table=11 FT /gene="gcvT" FT /locus_tag="BB0854" FT /product="glycine cleavage system T protein" FT /EC_number="2.1.2.10" FT /note="ortholog of Bordetella pertussis (BX470248) BP0195" FT /protein_id="CAE31353.1" FT /translation="MSAPLKRTPLAEEHLAAGARMVDFGGWDMPLAYGSQLEEHHAVRQ FT DAGMFDVSHMLNVDVGGADATAFLRRLVANDVARLATPGKALYSCMLNPQGGIIDDLII FT YYFAPDQWRVVVNAGTADKDIAWMQRVAAADGFDVAIAPRRDLAMVAVQGPNARAKVWA FT ARPAWQAASEPLAPFSAAAVEAGTLVARTGYTGEDGFEIVLPADAVVQLWRDLLAQGVR FT PCGLGARDTLRLEAGMNLYGQDMDELVHPDQAGLSWTVALKDEARRFVGRDAIEQFAVP FT RAFVGLKLQERGVMRAHMPVRCAQGMGELTSGTMSPTLGVSVGFARVPVGVQPGDAVEV FT EIRGKWVPALVCKLPFVRHGKAVEHS" FT misc_feature 901943..902875 FT /note="HMMPfam hit to PF01571, DE Glycine cleavage FT T-protein (aminomethyl transferase), score 4.6e-118" FT CDS 903044..903355 FT /transl_table=11 FT /gene="gcvH" FT /locus_tag="BB0855" FT /product="glycine cleavage system H protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0196" FT /protein_id="CAE31354.1" FT /translation="MFVVGITDNAQEQLGDLVFVGDVKVGATLKAGETAGVVESVKAAS FT DIYAPVDGEIVAFNDELEANPSLINESAYTAWIFKIKPANAADLDKLLDAAGYQAVAG" FT misc_feature 903044..903349 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01597, DE Glycine cleavage FT H-protein, score 1.1e-26" FT CDS 903415..906279 FT /transl_table=11 FT /gene="gcvP" FT /locus_tag="BB0856" FT /product="glycine cleavage system P protein" FT /EC_number="1.4.4.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP0197" FT /protein_id="CAE31355.1" FT /translation="MSRAPDTHSDFIPRHIGPSDEDQATMLAAIGAASLDALIDEVVPP FT RIRSRAPLALPAARSETDVLQDLKRMAARNQIYRNYIGQGYYGTHTPNVVLRNVLENPA FT WYTAYTPYQPEISQGRLEALLNYQTMVADLTGLDISNASLLDEGTAAAEAMTLARRGSR FT SSSPVFFVSQHCHPQTLEVVRTRAEGLGIELVIGDESRGLPECFGVLLQYPHSLGGVAD FT YRELAQAAHAQGAVVACVTDLLALALIEPPGQWGADIAVGSAQRFGVPFGFGGPHAGFM FT SCRDAYKRNMPGRLVGVSKDAQGNPALRLALQTREQHIRREKATSNICTAQVLLAVMAG FT LYAVWHGPRGVRRIAERVQSLTGALRAALAGLGVKVANDTWFDTLLLETGVATPAILAA FT ADCARINLRQVDGARLAVSLDETVTLADLQALVNVFAAGLGKDEVALPAPQASLDGIPA FT AVRRQGPILSHPVFSSVQSETDMLRYLRKLADKDLALDRTMIPLGSCTMKLNATAEMIP FT ITWPEFALIHPFAPASQTPGYRELIDGLSAQLCEITGYDGISLQPNSGAQGEYAGLLAI FT RAYHQANGQPQRNVCLIPASAHGTNPASAQLAGMDVVVVASDANGNVDLADLRARIAQV FT GERLAALMITYPSTHGVFEEAVTEICDAVHEAGGQVYLDGANMNAMVGVAQPGKFGSDV FT SHLNLHKTFCIPHGGGGPGVGPVAVRAHLAPYLPGVLDAQGRLDPEAKVGPVSAAPYGS FT AGILPIPYVYIALMGAEGLRRATEVAILNANYIAARLRDHYPVLYAGRNGRVAHECILD FT VRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIA FT IRAEIAQIESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPP FT VARVDNAYGDRNLVCACLPVEAYA" FT misc_feature 903451..904719 FT /note="HMMPfam hit to PF02347, DE Glycine cleavage system FT P-protein, score 3.2e-247" FT CDS complement(906634..907374) FT /transl_table=11 FT /locus_tag="BB0857" FT /product="putative GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0198" FT /protein_id="CAE31356.1" FT /translation="MKTVETNPNPLGPIKAVRSRDLLADALREQILSGARPSGVALPSE FT RELTEETGLSRAAVRDALRVLESEGLIETRQGRYGGSVVKLPANDALARPVALFARARG FT ISLQEMIEARVAIEPTIAELAALRRTPEDLQALIQATDLLQEALPRVEQFLDLNVRWYF FT ALADACHNDLLRAFIVSIAGLILAATSREGQTPEPTRRLILQSHRRVVDAVIAGDAPAA FT RRRMERHVAGYQEHYERLGLTPSA" FT misc_feature complement(907123..907308) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.2e-11" FT misc_feature complement(907183..907248) FT /note="Predicted helix-turn-helix motif with score FT 1063.000, SD 2.81 at aa 43-64, sequence FT PSERELTEETGLSRAAVRDALR" FT CDS 907444..908655 FT /transl_table=11 FT /locus_tag="BB0858" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0199" FT /protein_id="CAE31357.1" FT /translation="MAAVSSSVPPTPLGGVRVLDLSKVLAGPLCTQYMADMGADVIKVE FT AAGQGDDTRGWPPFQDGQAAVFLSCNRNKRSIALDLKSAHGRAVVQRLAAWADVVVHSF FT GPGVAQKLGVDWEALSEINPRLVYCAISGFGPVGSLSHGKGFDVVLQAFCGMISITGET FT EGGAVRSPFSPVDQATGLHALIGILAALRQRDASGRGVTVDASLFDTALGFMGYFMQGY FT WARGTEPARAGAGHESLCPYQDFATADKPIILGIANDALWRAFCTLAGRPELVSDPRFA FT TNAQRVANRAQTLAATRELLAARTRGEWLPALEQAGIPCSPIHTLAEVDAHPHTRESGM FT VFDYPETGADTGPLKGVAQPVRFDGMRLTTPKRPPSLNQDWASVLADAGYSDPEVRDLL FT QQMA" FT misc_feature 907672..908238 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 6.3e-63" FT CDS 908684..909652 FT /transl_table=11 FT /locus_tag="BB0859" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0200" FT /protein_id="CAE31358.1" FT /translation="MMNVLIRRALCAAIASLAAAAAHAAYPEQPVRIVVAFAPGSGTDN FT VARYYATRLSEELKQPFVVENKPGANGSIAATQVARTQPDGYTLFLGSNSTLSAAPFLF FT KKLPYEPLKDFTAVARLSDIPSMLVVGADSPIRDFDQFIGKARAEPGRVTWANANTAHL FT AAGMALTKQAQLDMISVPYKSSPQALTDVIGGQVTAMVVDTSAGTAFVQQGKVRALAVT FT TARPVAAMPGVPSMSERFPGIDVYSWLGIVGPAGMPDEVVSVVNQAILKINASEDTVRF FT LRENAGAEPPPSSSPAEFTQFMHAQLEVWRKLLRDANVEPM" FT misc_feature 908684..908755 FT /note="Signal peptide predicted for BB0859 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 24 and 25" FT misc_feature 908819..909640 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.2e-72" FT CDS 909649..910482 FT /transl_table=11 FT /locus_tag="BB0860" FT /product="probable enoyl-CoA hydratase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0201" FT /protein_id="CAE31359.1" FT /translation="MSQQESRMSAPACVSEFVRYDVDAGVARITLDRPDRRNAIDVPMR FT AALLAAVQAATADPAVRAVVLTGAGGHFCSGGDVSTMRGASMSAEQGRDRMAPIGACAR FT ALLEMPKPVIAAVDGIAFGGGFGLCLCADLVLATPAARFCLSFMRIGLVPDFAAAFTLP FT RLVGLQRARQLIYTAAEIDGRQALEYGLVSELVDAGRLAPRAAEVATAMAGMPATAFAL FT TKQALLRSSSSELAAMVEMEMTSQGVAFNTGYHQQAVERLLEKKPPLYSFPAPTA" FT misc_feature 909727..910239 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 6.8e-45" FT misc_feature 909988..910050 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(910533..912557) FT /transl_table=11 FT /locus_tag="BB0861" FT /product="putative exported protein" FT /protein_id="CAE31360.1" FT /translation="MKKSIGITAGVIVVLAGGWLGGTWYTGKRIETETQQRLGVLNEKL FT AAVVPGYTLRVDQLKYERGFFTTQARYGLSLSQDIKEESGTVTPLPLGSTEFDARFEHG FT PFPRSALASGQFLPQMAFVHAELARTELVKPLFELTKNAAPLWSDTIVSYSGNASTRSG FT LAPIDFTEDDVTLSFSGATLTGTFQRATRSGTARLDAEYVRFTADGDQDTQMSATGWSV FT DMRSHQGKHGFTLGESTMAIKRIAMIDKRESLDISLDDLSYRALATEDGDYIDIEAAYK FT TGPLTVNKIPFGSGELNVKASRLDGQALKALSDGYNQLLRGYFATGETDEGLKDEQLTM FT LIENGGRLLAGGPSLSLGPVAWRTEKGESSLMSSIVLVKPATTSGELTPREYLEEAVKA FT IDVKMVVSKPMVRDLAIHYETSQGKTPEEAAKEADETIDAFAGMAEILNIGRNDGDKLV FT GTFTYAAGVAKLNGRDVPVNELFDNLYDSASASLDDDEHNHEDDAAMSAEAASEAVEAA FT AEAAAAEAAQEAADAAAWATEGDSLRSVNAGLLTSILAEGGYDSTTEEGASGPVIVIDA FT NGLPLRDLRAELYCIDDDECMDVSMKASFGKRKTSLKALNAWNQKYRWTRAYLDDDNQA FT VLRMDLSAEGGVGRENLSIMVNTFMQMVGNFEDEVYAAR" FT misc_feature complement(912477..912545) FT /note="1 probable transmembrane helix predicted for BB0861 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(912510..912557) FT /note="Signal peptide predicted for BB0861 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.721) with cleavage site FT probability 0.681 between residues 16 and 17" FT CDS complement(912685..914133) FT /transl_table=11 FT /locus_tag="BB0862" FT /product="conserved hypothetical protein" FT /protein_id="CAE31361.1" FT /translation="MKKSVAVTTGVIIVAVGGWLAGTWYTGQRIETESQTRLNEINAQL FT AAAFPEFPVRINQLKLERGFFTSQARYGVEVGKSEETGKPEATVEVDARIEHGPFAPGA FT LARGKLMPQLAFVHAEVANTEDLKKVFEVTKGATPLWSDTVVAYNGDSTSTGGLAAIDY FT SGDEGKFAFSGATFDGSYQRATQAAIGSLKADSLALDASADDDGGPLLFTLDGLAVTVD FT SRMGKSGLSIGDSALSVKRLEVKQPEGDAHLTVADMAYAARIGEQDEFINGEISYGAGE FT ITYNGIALGNGRAVFKAERLNAAAIKVVADEYNKAIKLQAEGKDPVPDNAEMRKLLMAQ FT ADTLLAGKPVLTLDPVQWKTAQGESVFNARVALSKPASSDLMAVDYFSQAIESIDASAT FT LSKPMIKALMVGYLQSQEGMDAQQAAAAADQQVSSLAGMAEMMNLGKNEGDNIVSKFHY FT AAGTVDLNGRKMPADQLLGSILGG" FT misc_feature complement(914053..914121) FT /note="1 probable transmembrane helix predicted for BB0862 FT by TMHMM2.0 at aa 5-27" FT CDS complement(914309..915784) FT /transl_table=11 FT /locus_tag="BB0863" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3163" FT /protein_id="CAE31362.1" FT /translation="MRWLLAMIKHETNTFSPVPTPLERFFRGSPEILAGERAIRAYENT FT DSGLGGYIEVARREGAEIVVPVAAESWPSAPTDRATYERLCGLVLDEARRGGFDAILLD FT LHGAMVAEGVEDAEGDLLRRLRDIAPAIPVGVTLDMHANIYDDIVRHATVISGFHTYPH FT VDIRAAGLRAANAIARTLRGEIKPVMSWANKPMLPHIMRQGTHAEPNKSLQARCKALES FT EGVIAASVFVGFPHADIREAGLSAVVCTDANLAQAEQYRDELLETAWRGRADWVFHAEP FT LAPTIARAKAIENGPVVLLDHYDNTGSGGTMDTTAVLAEILDQGLENVAFYAICDPQAA FT QQAAAAGVGATVTLPLGGKVAMPALRQASPPLHLTARVKLLFDGVYLNRGPMYRGVRND FT TGLTVVLDTGKVEIVVVSRHQEPFDINCLLSAGIDPLQKRYVALKSRVHWRAGFADMAT FT HVIECTGVGVTTSDYGQVEFRHVRRPVYPLDAI" FT misc_feature complement(914561..914581) FT /note="PS00307 Legume lectins beta-chain signature." FT CDS complement(915828..917486) FT /transl_table=11 FT /locus_tag="BB0864" FT /product="putative ABC transpoter ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3162" FT /protein_id="CAE31363.1" FT /translation="MPYAPYPPAGDTSAAVLAIRNLSVSVCGAGNRVVRNLSLDVHAGE FT TVCVVGESGSGKSVTSLAVMGLLPEGILEVSGGSARVLGEDIVTASARRRRELRATRMA FT MVFQEPMTALNPVHRVGSQVDEVLRLHRRMPRAQRRAKVLEMFRSVHLPDVERIYDAYP FT HQLSGGQRQRIVIAMALILEPKLLIADEPTTALDVTTQKQILALIRELQDRHQTAVLFI FT THDFGVVAEIADRIVVMNRGDLTEAGTRDEILARPSQNYTRRLVSSVPSLVPTQREAPG FT GEPVLRITGLGRTYAERRSLFGATRTVVAASEVDLTLRRGEILGIVGESGSGKSTVARC FT IVRLIEPSAGRMLLGETDIARLSGAGLRPLRRKVQIVFQDPYRSLNPRRAVGESIIEGL FT LNFGMPRAQALVRAARTLGVVGLGPDVMRRYPHQFSGGQRQRLCIARALVMDPEVLVAD FT EAVSALDVSVQAQVLELIEQVRERTGVSVLFITHDLRVAAQVCDTIAVMQHGKVVETGA FT AQTVLTRPGHAYTRALIDAAPGRGWDFRNFRPLPA" FT misc_feature complement(915957..916526) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 3.9e-65" FT misc_feature complement(916143..916187) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(916482..916505) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(916761..917357) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.4e-60" FT misc_feature complement(916947..916991) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(917313..917336) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(917490..918389) FT /transl_table=11 FT /locus_tag="BB0865" FT /product="putative peptide ABC transporter permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3161" FT /protein_id="CAE31364.1" FT /translation="MPTHSDAVADGALPENGPPQAGAWRRVRREFSGAPVLAALAVLAL FT VVGAALLAPWLGTVDPTAIDPGARLKPPFGDYLFGTDAFGRDIWSRVVYGARVSLVAGL FT GAALVSVTLGLVIGVIAGWFRTLDGLIMRTMDAVMAIPGILLAIALVSVTGASLATVLV FT AITIPEIPRVVRLVRGQILSVRGEPYVEAALALGTPLPLLLWRHLVPSTVAPLTVQGTY FT VFASAMLTEAILSFLGAGIPPEIASWGNIMSEGRMYFRMLPGLILFPGLFLSLTVLSVN FT ILGDALRDALDPKMTRRT" FT misc_feature complement(join(917541..917609,917667..917726, FT 917763..917831,917889..917957,918018..918086, FT 918222..918290)) FT /note="6 probable transmembrane helices predicted for FT BB0865 by TMHMM2.0 at aa 34-56, 102-124, 145-167, 187-209, FT 222-241 and 261-283" FT misc_feature complement(917619..917849) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 0.0033" FT misc_feature complement(917760..917846) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS complement(918392..919333) FT /transl_table=11 FT /locus_tag="BB0866" FT /product="putative ABC transporter permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3160" FT /protein_id="CAE31365.1" FT /translation="MLAFIARRLLATIPVLIMVAVVVFAILRASPGDPAIIMAGDAATP FT ERIAQIRQVMGLDQPLVKQFFIWTGRLVRGDMGTSLMSGVPVTQLIGQRLEPSLSLAVI FT TLAFTLAVAIPLGILAAWRRGRLLDRAVMGFSVLGFSVPVFVTGYVLIWAFAIKLGWFN FT VQGYTPLAQGFWPYLHRLVLPSLALSTVYVALIARITRTSIIEVMGEDFIRTARAKGLG FT ETGVLLGHALRNAAVPIATVIGVGVALLISGVVVTESVFNIPGLGRLVVEAVMARDYPV FT IQGLTLFFAFVYVFINLVVDCAYTVFDPRIRY" FT misc_feature complement(join(918413..918481,918563..918631, FT 918737..918805,918863..918931,918968..919036, FT 919241..919309)) FT /note="6 probable transmembrane helices predicted for FT BB0866 by TMHMM2.0 at aa 9-31, 100-122, 135-157, 177-199, FT 235-257 and 285-307" FT misc_feature complement(918509..918724) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 0.031" FT misc_feature complement(918635..918721) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature complement(919205..919264) FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT misc_feature complement(919259..919333) FT /note="Signal peptide predicted for BB0866 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.916) with cleavage site FT probability 0.462 between residues 25 and 26" FT CDS complement(919379..920944) FT /transl_table=11 FT /locus_tag="BB0867" FT /product="putative extracellular solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3159" FT /protein_id="CAE31366.1" FT /translation="MLKSVRIAALAGAMLLAAQGAGAETVIKAVMHSPLRLTDPHATTA FT YITTWHGYMIYDTLLATDADNKIQPQMLEKWEVSPDGKTYTMTLRPGQKWHDGKPVTAE FT DCVASIKRWAGGDGMGRTLMKFTDRIEAVDDQTLRIVMKEPTDLALRALSKPTGTAAFM FT MPKRIADIPIGQPITDMTGSGPFKVAEFKPGVKTVYVRNADYVPRQEPASGLAGGKAVH FT IDRVEWNVMPDALTTANALLGGEIDFVEQFPYDLLPMVEGNPALKEEALSPVGYFTMYR FT FNFKYPPFDNRKIRQAAMYAIGQEDVMKALVGNPKYWQTCASLWGCGTPFETDIGKDMV FT VPSNIEKARALLKEAGYDNTPILVMHATDVGTLSAQPVVMAQALRKAGFNVNLAAMDWQ FT SVATRRASKAAPAQGGWNIHNTNWYATDIMDPVRSAPAAANGDNAWFGWPDIPEIETLR FT TRFALSSDPAEQKKLAEEAQRIGIDEGLYVPLGQMSVPTVYTTKLSGLVHAPVFAFWNV FT KKAP" FT misc_feature complement(919388..920944) FT /note="HMMPfam hit to PF00496, DE Bacterial extracellular FT solute-binding proteins, family 5, score 2.1e-20" FT misc_feature complement(920876..920944) FT /note="Signal peptide predicted for BB0867 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.917 between residues 23 and 24" FT CDS complement(921230..922723) FT /transl_table=11 FT /gene="mmsA" FT /locus_tag="BB0868" FT /product="putative methylmalonate-semialdehyde FT dehydrogenase [acylating]" FT /EC_number="1.2.1.27" FT /note="ortholog of Bordetella pertussis (BX470248) BP3158" FT /protein_id="CAE31367.1" FT /translation="MKTIPHFINGQPYEGRNGRYTQGFNPATGEVSSSIPLASAQDVDT FT AVAAAAAAFPAWSETPPLKRARILFKFKALLDEHQDELAALITAEHGKVFSDAKGEVTR FT GIEVVEFACGIPHLLKGQYTDQIGGGIDNWSMRQPLGVVAGITPFNFPMMVPCWMFPVA FT LACGNTFVLKPSERDPSAALRLAELLKEAGLPDGVFNVVQGDKQAVDALIAHPQVEALS FT FVGSTPIAEYIYAEGTRRGKRVQALGGAKNHMVVMPDADLDQVTDALMGAAYGSAGERC FT MAISVAVAVGEVADEVVARLAPRVRALVVKDGMQADAEMGPLVTAQHRAKVTGYIEDGQ FT ACGATLVVDGRGLQVPGNEGGFFLGGTLFDHVTPAMNIYREEIFGPVLCIVRVPDFAAA FT VELINAHEFGNGVSCFTSDGGIARAFARQIKVGMVGINVPIPVPMAWHSFGGWKRSLFG FT DHHAYGEEGVRFYSRYKSVMQRWPDSIGKGAEFTMPVAK" FT misc_feature complement(921281..922693) FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 8.2e-167" FT misc_feature complement(921869..921904) FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS complement(922755..924038) FT /transl_table=11 FT /locus_tag="BB0869" FT /product="omega-amino acid--pyruvate aminotransferase" FT /EC_number="2.6.1.18" FT /note="ortholog of Bordetella pertussis (BX470248) BP3157" FT /protein_id="CAE31368.1" FT /translation="MPFTANRQFKSQPRLLARAEGMYYTSTDGRQILDGTAGLWCVNAG FT HCRPEIVQAIASQAGEMDYAPGFQLGHPLAFEAATAVASFMPAGIDRVFFTNSGSESVD FT TALKIALAYHRARGDAQRTRLVGRERGYHGVGFGGISVGGISANRKTFSGALLPAVDHL FT PHTHSLEHNAFSKGQPAWGEHLADELERIVALHDASTIAAVIVEPMAGSTGVLVPPKGY FT LQRLREITARHGILLIFDEVITAYGRLGSPTAAEHFGVTPDIITMAKGVSNAAVPAGAV FT AVKREVHDAIVNGVQGGIEFFHGYTYSAHPLAAAAILATLGIYRRDDLFGRARDLSPAF FT EKAAHALQGAPHVIDVRNIGLVAGIELASRPDAPGARAAEAFRKCFDSGLMVRYTGDIL FT AVSPPLIIDEAQIGELFEGIGKVLKEIA" FT misc_feature complement(922761..924032) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00202, DE Aminotransferase FT class-III, score 1.2e-124" FT misc_feature complement(923214..923243) FT /note="PS00599 Aminotransferases class-II FT pyridoxal-phosphate attachment site." FT CDS 924263..925720 FT /transl_table=11 FT /locus_tag="BB0870" FT /product="probable GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3156" FT /protein_id="CAE31369.1" FT /translation="MIDFQPVRGRAQAPSLVEQVVQAFSSAIARQELRPGMPVPSVREF FT ARQHGISTFTVASAYSRLAAQGWLAARPGSGYRVASPQAAAPRAGTPGQWSPPRLNDSW FT LLSDIYADHSIPIKSGCGWLPPEWLHEEGLHQALRHLGRVPALRIAGYGHPYGYAPLRE FT TIAAGLGAAGMPAEADQVLLTQGVTHGLDLVMRTLLRPGDTVLVEQPCYANLLQLLRLA FT GMRVVSVPRGVDGIDCEALDAAALAHRPRALFVNTVLQNPSGASLGMANAFRVLQAAER FT HGLWIVEDDISRELMPAIAPLLAALDGAQRVVYLSGYSKAISPSVRVGYIVAHRDLVRD FT LARTKMAAGLTSPEIMERVVHQVIREGRYRAHVLRTRERLGQAHAQVVQAMDEHGLQLC FT ARPQAGLFLWARPGGAWRERGANALAELALKDGIWLAPGSYFDAADADIPWLRFNVAYS FT DAAALWRFLRGAGASAQPATRSYSTKS" FT misc_feature 924320..924499 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.9e-10" FT CDS complement(925684..926181) FT /transl_table=11 FT /gene="folA" FT /gene_synonym="tmrA" FT /locus_tag="BB0871" FT /product="dihydrofolate reductase" FT /EC_number="1.5.1.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3155" FT /protein_id="CAE31370.1" FT /translation="MPATPLLSLVVAYSTNRVIGRDNALPWKLPGDLAHFKRTTLGHPI FT IMGRNTWESLGRPLPGRTNIVITRNPAYGAAGAVVVGSLNAAIQACGDAAVACVIGGAQ FT IYAQALPLAQRVVATEVHAEIEGDAFFPPLPAGQWRETQRAAQPAENGLRYDFVEYERV FT AG" FT misc_feature complement(925696..926166) FT /note="HMMPfam hit to PF00186, DE Dihydrofolate reductase, FT score 1.5e-63" FT misc_feature complement(926062..926130) FT /note="PS00075 Dihydrofolate reductase signature." FT CDS complement(926212..927183) FT /transl_table=11 FT /locus_tag="BB0872" FT /product="putative thymidylate synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3154" FT /protein_id="CAE31371.1" FT /translation="MKQYLDLVQSILDQGAWQENRTGVRTLSLPGAALRFDLQQGFPAV FT TTKKLAFKSAIGEMVGFLRATRSAAQFRALGCKVWDQNANENEQWLANPYREGPDDLGP FT VYGVQWRHWPAYKLLPRSAGGQVADALARGYRQVAEVAENGAPHVLLYKAVDQLRQCLD FT TIHQSPGDRRILFHGWNWAQIEEMALPPCHLLYQFLPNAGTREISLCLYIRSNDVGLGT FT PFNLTEGAALLHLVGRLTGYKPRWFSYFIGDAHVYENHLPMLREQLTREPYPAPQLVLS FT DRIPDFAVTGKYEPQWLEQVEPGDFTLSGYQHHAPLTAPMAV" FT misc_feature complement(926218..927183) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00303, DE Thymidylate synthase, FT score 3.3e-93" FT CDS complement(927236..927673) FT /transl_table=11 FT /locus_tag="BB0873" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3153" FT /protein_id="CAE31372.1" FT /translation="MQMECTIDWGGPAGMLFTASTGSGHVAVMDGAVDGGGHDLAPRPM FT EMLLAGTGGCTAYDVVLILKRGRHAVTGCSVKLQAERADADPKVFTRIHFAFTVTGSKL FT PRAAVERAVQLSHEKYCSASAMLEKTAELSFSVDIVDTQAA" FT misc_feature complement(927254..927661) FT /note="HMMPfam hit to PF02566, DE OsmC-like protein, score FT 2.6e-30" FT CDS 927797..928465 FT /transl_table=11 FT /locus_tag="BB0874" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3152" FT /protein_id="CAE31373.1" FT /translation="MSTSSSASALGRRAGPLDGLIGEIDRALRVLSGAATAARPYPAQA FT PEAPDALSERERRHAAGLMRVNHVGEVCAQALYRGQAAACREPAARELLRQAAAEEVDH FT LAWCNERLRELGSRPSLLNPFWYTGSFALGVLASYAGVPRNLGFMAETERQVEAHLDGH FT LRTLPVQDRRSRDIVQKMKEDEAQHRASAERAGGVPLPAPVRGAMRAMSKVMTSTAYWL FT " FT misc_feature 929139..940614 FT /note="Region possibly encoding a lipopolysaccharide FT O-antigen" FT CDS 929193..930296 FT /transl_table=11 FT /locus_tag="BB0875" FT /product="probable glycosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3151" FT /protein_id="CAE31374.1" FT /translation="MTWLYICVVAFMVGGLIVASERWHGAFTGDSDLNKPQASHTRATP FT RVGGLAVLAGSLAGLLVLGPSNMTLTWLWPALFVAALPVFVAGLLEDITKDIGASKRLL FT AAFASAAIAWWLLGGVSRVGIAPVDWVLSFWPVSLIFTMFAVGGCTHALNIVDGMNGLA FT GMIATLMAVSISLVALQVGDMPIFMIAAALASATLGFLVWNFPFGRVFLGDGGAYFLGF FT MLAELAVLLVVRNPSVSPFYALAVLFYPVFETGFSIWRRRFKRGVPVDQPDALHLHQLV FT FRRLVRVTFSRGRRHAVPALCNALASPYMWVLALIGLVPATIWWDNAWFLCASLVVFAA FT VYTWLYMRLVSWRRPGWLLLPSVIRTH" FT misc_feature join(929202..929270,929331..929384,929394..929462, FT 929499..929567,929583..929651,929670..929738, FT 929748..929816,929835..929891,929901..929969, FT 930081..930149,930159..930227) FT /note="11 probable transmembrane helices predicted for FT BB0875 by TMHMM2.0 at aa 4-26, 47-64, 68-90, 103-125, FT 131-153, 160-182, 186-208, 215-233, 237-259, 297-319 and FT 323-345" FT misc_feature 929409..929903 FT /note="HMMPfam hit to PF00953, DE Glycosyl transferase, FT score 6.1e-13" FT misc_feature 929607..929639 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 930303..931676 FT /transl_table=11 FT /gene="wbpO" FT /locus_tag="BB0876" FT /product="polysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3150" FT /protein_id="CAE31375.1" FT /translation="MAPVPARGVLQRYKHVQTTYNSVAVTRLIGRFILRIDDVKLAVVG FT LGYVGLPLAVEFGKKRPVIGFDINERRIAALKAGHDHTLEVEDDELAQAAQLSYTAERA FT DLAQANVFIVTVPTPIDEYKQPDLTPLVKASETIGAVLKRGDIVIYESTVYPGATEEDC FT VPVLERVSGLKFNQDFYAGYSPERINPGDKAHRVNTIKKVTSGSTPEVAELVDQLYNEI FT ITAGTHKASSIRVAEAAKVIENTQRDVNIALINELALIFNKMGIDTEAVLQAAGTKWNF FT LPFRPGLVGGHCIGVDPYYLTHKAQSIGYHPEIILAGRRLNDSMGGYVVSQLVKAMAKR FT RIHVEGARVLLMGLTFKENCPDLRNTRVVDIVRELGEYHVDVDVYDPWVDPAEAEHEYG FT ITPVAKPAAGAYDAVILAVSHHQFVEMGAEAIRKFGKAEHILYDLKYVLAPDQADLRL" FT misc_feature 930417..930974 FT /note="HMMPfam hit to PF03721, DE UDP-glucose/GDP-mannose FT dehydrogenase family, NAD binding domain, score 1.4e-73" FT misc_feature 930999..931283 FT /note="HMMPfam hit to PF00984, DE UDP-glucose/GDP-mannose FT dehydrogenase family, central domain, score 4.3e-44" FT misc_feature 931350..931634 FT /note="HMMPfam hit to PF03720, DE UDP-glucose/GDP-mannose FT dehydrogenase family, UDP binding domain, score 2.8e-31" FT CDS 931688..932713 FT /transl_table=11 FT /locus_tag="BB0877" FT /product="UDP-N-acetylglucosamine C4 epimerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3149" FT /protein_id="CAE31376.1" FT /translation="MTNRFETTCAQLRAQPQKWLVTGCAGFIGSNLLETLLGLDQAVVG FT LDNFATGHQHNLDEVRAAVTPEQWARFTFIEGDIRDLAACQRAVQGVDRVLHQAALGSV FT PRSLKDPITTNEVNIGGFLNMLVAARDAQVQAFVYAASSSTYGDHPDLPKVEERIGNPL FT SPYAVTKYVNELYADVFARSYGFSSVGLRYFNVFGKRQDPDGAYAAVIPKWTAAMIKGE FT DVVINGDGQTSRDFCFVENAVQANLLAAMAAPEGANQVYNVAYNARTTLTELFEHLRRA FT LAGQGVSYEKAPVYAEFRAGDVRHSQADIGKAGKLLGYEPAYDILRGLEAAMPWYTQFL FT R" FT misc_feature 931742..932707 FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 2e-115" FT CDS 932715..934085 FT /transl_table=11 FT /locus_tag="BB0878" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3148" FT /protein_id="CAE31377.1" FT /translation="MKAIRRKLDAIHPDHQRIFKGAFRVAVFLILGKAAGAIKEMAVAY FT RYGVSDAVDAYQFTMTMATWLPVTIVGALSVVLIPVLVRLRRAGGHERDRFVRELQGWS FT LAAGLALALLTWMAWPHVLDWLGGGLSGTVDGMTHELLLAFAPVAALLLMAGISAARLR FT SHERHVNTLLDSVPAVTTLAWVMLAASADSVGPLLWGTLVGYAIQAAWLAWLAARADGG FT FWGWPAFTLRSPHWPELAAAAGVMLVGQVAMSFVGPLDQYAAANLGSNANATLGYASRL FT LSLVLGIGAVSVGRAALPVLADVQSRGDGARARAMALKWSALMVGAGAAAVVVGWLLAP FT WGVALLFERGAFTAENTQAVAQVLRWGLLQLPFYFGVLILVQLLASQNRYRIMALIAVA FT NFLLKAVLNTVLAPRMGTAGIMLATSLMYLLSFACYTVVALRPAPGADGGDDDREKR" FT misc_feature join(932775..932828,932895..932963,933024..933083, FT 933126..933194,933297..933365,933423..933491, FT 933552..933620,933678..933746,933801..933869, FT 933882..933950,933969..934037) FT /note="11 probable transmembrane helices predicted for FT BB0878 by TMHMM2.0 at aa 21-38, 61-83, 104-123, 138-160, FT 195-217, 237-259, 280-302, 322-344, 363-385, 390-412 and FT 419-441" FT misc_feature 932841..934079 FT /note="HMMPfam hit to PF03023, DE Virulence factor MVIN, FT score 4.9e-07" FT CDS 934086..935222 FT /transl_table=11 FT /locus_tag="BB0879" FT /product="putative glycosyltranferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3147" FT /protein_id="CAE31378.1" FT /translation="MPGPAERPLRVLIFIHSLHGGGAERVAADLSAHWARDGRAVMLVT FT QADASGDVYPLHPQVLRRTLDTAGEGGGWRGVLANLRRIRALRALIKDFQPDIVLGMMT FT TASVLAVLAARGLGCRVVATEHTHPPSQALSGMWLRLRRWTYPRAARVVALTRGTADWL FT RTHVPGSRLAVIPNPVHWPLPRTEPVLVPPADGRPRLLAVGRLHPDKGFDVLIDAYARI FT APRYPDWDLVILGEGDERAALQRRVDEAGLAQRVALPGRAGNVGDWYACAALYVLTSRF FT EGLSNTLLESMASGLMPVSFDCDTGPREIVRPGVDGVLVRPAGDAGAMAQALAAAIDDE FT PGRRAMAARAIDVRERFSARHVLDLWQQLFDDALSQAK" FT misc_feature 934635..935144 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 1.4e-39" FT CDS 935269..937194 FT /transl_table=11 FT /locus_tag="BB0880" FT /product="putative asparagine synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3146" FT /protein_id="CAE31379.1" FT /translation="MCGIVGIWGPLRDKANVLAESCRRIRHRGPDSNGYWEDAEADLAL FT AHVRLAILDLTEAGHQPMVSACGRYVIVLNGEIYNHMELRERLQQDGLAPAWRGHSDTE FT TVLACFAGWGLEQTLQAAVGMFAIALWDRAERKLALMRDRMGEKPLYYGYSQANLLFGS FT ELKAFMPVPGFGRELDRNALASFMRHNYIPAPQSIYAGIRKLPPGAWVEIDAAQMRRGE FT LPEPQVYWSARRAADQGLGDRRRFESDAQAIDALEQVVSQAVRGQMLSDVSLGAFLSGG FT IDSSTVVALMQAQSAQPVRTFAIGFHEKGYNEAEHAKAVAAHLGTEHTELYVTAEDGLA FT VVPSLADMYDEPFADSSQIPTSLVTRMARQHVTVALSGDGGDELFGGYSRYFRVDNWWR FT KCAAMPGPLRHLAGAALRGSAALPGAGAWRGKVGKLGELLGADTRGEFYRLFVSYWADP FT GRVVIGGTEPLSPFEQPMEGSTFDAMMKLDTVTYLPDDILVKVDRAAMAVSLETRVPLI FT DHRVYEFAWQLPFEYKVRGGTGKWLLRQLLYRHVPQAMVDRPKRGFAVPLAAWLRGPLR FT DWAEALLDPARLRQEGWFEPEPILRKWREHLSGHRNWDSHLWGVLMMQAWLDRYRAGAG FT DEAGRR" FT misc_feature 935269..935286 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 935272..935727 FT /note="HMMPfam hit to PF00310, DE Glutamine FT amidotransferases class-II, score 8.9e-17" FT misc_feature 935995..936951 FT /note="HMMPfam hit to PF00733, DE Asparagine synthase, FT score 2.3e-53" FT CDS 937191..938312 FT /transl_table=11 FT /locus_tag="BB0881" FT /product="putative glycosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3145" FT /protein_id="CAE31380.1" FT /translation="MKILLLVSSMHAGGAERVAATLANGWAARGDQITLMPTYSSKGTC FT FYPLSDDVELLWLADRAGTRSGGAVAAWQRLRALRAVVRERAPDVVVSFLTNVNVAAIL FT ATRGLKTPLIVCERTNPVVDTSIGRVWRVLRRVLYPLADMVTVQADATVEPFARQVPGL FT KQLCVIPNPLPPELFDATPAAGSGAAPAARKRLMAMGRMVPDKRFDLLIDAYAGLADEF FT PDWDLWIWGEGPRRDDLQAQVAARGLATRIHMPGRTAAPWDELAKADAFVLSSAVEGFP FT NVLLEAMSLGLPCAAFDCPSGPAEMTRGGRDALLVPAGQRDALRDALGRLMRDPELRRD FT LGRRAAQSVRQRYALPAVLAQWDALFERVRGGA" FT misc_feature 937725..938234 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 3e-37" FT CDS 938309..939463 FT /transl_table=11 FT /locus_tag="BB0882" FT /product="putative glycosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3144" FT /protein_id="CAE31381.1" FT /translation="MTRILRVMHVITGLGQGGAESVLFRLATWPDQRVRHSVISLTDEG FT VYGTRLRAAGVPVHALGMPRGRVTLGGMLALRALLRRERPDAVQTWMYHADLIGGVAAR FT LAGIRAVAWGIRNSGEHLDRSSRSARLVLKLCARLSARLPAAIVCAAQDAATRHRRHGY FT DGARMVVIPNGYDLSRYAPDAQARERMRSLWGVAPETPLVGCVARWDPLKDHANLLAAL FT GGLVREGRDRGLQCALVGRGMSPGNAGLAALIDAEGLRGRVLLAGPSDDVPAVMNALDL FT HVLSSCAEGFPNVVAEAMACGTPCVATDVGDAAYIVGDTGGVAPAQQPAALAAAIEAAL FT AGIAARGRDAAGAAGRQRVLAEFDLRRMVESYEAVWRRISGERA" FT misc_feature 938864..939382 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 2.4e-25" FT CDS 939460..940590 FT /transl_table=11 FT /locus_tag="BB0883" FT /product="putative glycosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3143" FT /protein_id="CAE31382.1" FT /translation="MTSPRRLLFVVNNPAFFLSHRLPLAEAARADGYEVHVATMDGPSV FT PDIVARGFVHHAIPMTRSGKQPLQELRSVWALVRLFRRLRPGLVHLVTIKPVLYGGIAA FT RLAGVPAMVAAISGLGFVFVAGGLKARLLRAAVGRLYRLALGHRNSRIVFQNTADRDVL FT ARLGAVRAEQVVMIRGSGVDLGQYRVVPEPAAPVTALMAARLLRDKGVREFVEAARLLR FT GRGLSVRMQLAGGVDPGNPASITPEQAAQWQDEGCVEVLGERKDIAALYGAAHMAVLPS FT YREGLPKSLLEAAACGRAVVTTDVPGCRDAIDPDVTGLLVPPRDAPALADAIARLAEDA FT SLRQRMGAAGRALAEREFGIEDVCRRHLAIYRALAR" FT misc_feature 939775..939843 FT /note="1 probable transmembrane helix predicted for BB0883 FT by TMHMM2.0 at aa 106-128" FT misc_feature 940006..940518 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 3.3e-32" FT CDS complement(940598..942163) FT /transl_table=11 FT /gene="pgi" FT /locus_tag="BB0884" FT /product="glucose-6-phosphate isomerase" FT /EC_number="5.3.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP3142" FT /protein_id="CAE31383.1" FT /translation="MPTPLPSSSAWLAFADAARHSSRRGARLRVIEAAGLRVDLTAQAH FT SDDLDSAAEDLLAQQDFDNARAQLFDGGPANWTEHRPAWHTALRAARPPTPVAGAILGE FT RDRLRRFVQDADMRGAYRHVLHLGIGGSDWGPRMVTRALRHNGLKREVRFASNVDSHAV FT ADALHHLDPHDTLIIVASKSFTTTEPLANAEVAMNWLRNAGVADPVRQVVAITANVDAA FT LDFGISPQHIFRFWDWVGGRYSLWSAIGLPVALALGCDALDELLAGAAAMDQHFLHTPM FT RRNAPLQMALAGVANRSVLGYGSLAITPYDSRLTHLVPWAQQLEMESLGKVAGHDGSPA FT GVPTGPVVWGMTGTDCQHTFFQWLHQDTAGAPVDFIVCEQADHPYDHFHKLLIANCLAQ FT RAALLRGKPFDEALKEARLVESDPQQAEILAHHRVHPGGRPSTLIMLPRLSAHALGALL FT AMYEHKVFAQGVLWGINPFDQWGVEYGKALARNIIRELENPSSEVNQQDPSTRYWIDAL FT RKQP" FT misc_feature complement(940622..942049) FT /note="HMMPfam hit to PF00342, DE Phosphoglucose isomerase, FT score 1.2e-158" FT misc_feature complement(940706..940759) FT /note="PS00174 Phosphoglucose isomerase signature 2." FT misc_feature complement(941387..941419) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(941414..941455) FT /note="PS00765 Phosphoglucose isomerase signature 1." FT CDS complement(942170..943552) FT /transl_table=11 FT /gene="pgm" FT /locus_tag="BB0885" FT /product="phosphoglucomutase" FT /EC_number="5.4.2.8" FT /note="ortholog of Bordetella pertussis (BX470248) BP3141" FT /protein_id="CAE31384.1" FT /translation="MAHPFPASVYKAYDIRGSVPDQLDPVFARALGRALAASARAQGIG FT ALVVGRDGRLSSPDLAGALQEGIMEGGVDTLDIGQVPTPLVYFAAHTQGTGSGVAVTGS FT HNPPQYNGFKMMMGGQALYGPAVQALRPAMLAPAAAPGTWGERRQLDVVPAYIERIVSD FT VKLARPMKIAVDCGNGVAGALAPQLFRALGCEVDELYCEVDGTFPNHHPDPAEPRNLQD FT LIAHVTSTDCELGLAFDGDGDRLGVVTKSGQIIWPDRQLILFARDVLARCPGATIIYDV FT KCSRHVGVAIEQSGGVPLMWQTGHSLVKAKLAETGAPLAGEMSGHIFFKERWYGFDDGL FT YTGARLLEIVSRETDASRPLEALPQALSTPELKLEMAEGEPHALIAALQQQGEFASASR FT LVTIDGVRAEYPDGFGLARASNTTPVVVLRFEAETEPGLARIQQEFRQQLLRLAPQAKL FT PF" FT misc_feature complement(942191..942442) FT /note="HMMPfam hit to PF00408, DE FT Phosphoglucomutase/phosphomannomutase, C-terminal domain, FT score 4.7e-09" FT misc_feature complement(942443..942787) FT /note="HMMPfam hit to PF02880, DE FT Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha FT domain III, score 5e-35" FT misc_feature complement(942791..943093) FT /note="HMMPfam hit to PF02879, DE FT Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha FT domain II, score 5.3e-48" FT misc_feature complement(943118..943543) FT /note="HMMPfam hit to PF02878, DE FT Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha FT domain I, score 1.8e-35" FT misc_feature complement(943217..943261) FT /note="PS00710 Phosphoglucomutase and phosphomannomutase FT phosphoserine signature." FT CDS 943831..944442 FT /transl_table=11 FT /locus_tag="BB0886" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3140" FT /protein_id="CAE31385.1" FT /translation="MSADISFVSTRRRMAPGRVDLTAGGERRLDIPVHAGIDGSVEAGR FT AWERCVWRAARVLIAECPAPRLSARLEATLRGVAVRIARDRGWRGIGTVVFSLDVGTGM FT FRMIEARLCGLQQGGPAADAASGGHALEVRISACADSGRRGAHLLTYGATRGEALRRAY FT QALAKLPGLAQADRAFLMDRIASPAFCSGLTGSQLDRIAS" FT CDS 944534..945949 FT /transl_table=11 FT /locus_tag="BB0887" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3139" FT /protein_id="CAE31386.1" FT /translation="MTLPSELRALLGPSHVLTGDDAEPFLLDWRRRYRGRALAVARPGS FT AEEVAAVVRLCQAHGAPLVPQGGNTGLCGGATPDDSGSAVVLSTTRLNRVRAIDTDNDT FT ITVEAGCVLQAVQQAAEQAGRLFPLSLAAEGSCTIGGNLATNAGGTQVLRYGNARELTL FT GLEVVTAEGEIWNGLRGLRKDNTGYDLRDLYVGSEGTLGIITAATLKLFPLPVATCTAL FT LALDSIDAAVEVLSRARGGFGASLTGFELMAADCLQAVTRLFPQQRLPFDGASADSPWF FT ALLELSDSESEAHARARFEAVVGAAIEDGLVADAAIAENLAQSQALWHLRESIPLAEAE FT LGKSIKHDVSIPISAIAAFVHQTNGLLQGRFPGVRNVIFGHLGDGNLHYNVARGPGQTE FT ADLLGLQSQVYDAVHGSVQAFAGSISAEHGVGQLKRDELPRYKSAVELALMKRLKAALD FT PRGLLNPGKVLQA" FT misc_feature 944642..945133 FT /note="HMMPfam hit to PF01565, DE FAD binding domain, score FT 7.4e-64" FT misc_feature 945173..945937 FT /note="HMMPfam hit to PF02913, DE FAD linked oxidases, FT C-terminal domain, score 3.5e-72" FT misc_feature 945542..945565 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 945964..946674 FT /transl_table=11 FT /locus_tag="BB0888" FT /product="putative two-component system response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3138" FT /protein_id="CAE31387.1" FT /translation="MTAAPANRHFRVLIVEDDLTIAANLYDYLQVRGFVPDAAYDGRSA FT LALLDEHAFDAMVLDVGLPGMDGHAVLHALRVERRAALPVLMLTARDGLDDKLAGFAHG FT ADDYLTKPFALAEVEARLLALIQRSRGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTR FT KCGMIVEVLLRDPGRVVSREQLENALWGDDPPSSDALRSQVHLLRRALADAGFDGIETV FT HGTGWRLALPAGGA" FT misc_feature 945991..946353 FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 2.2e-29" FT misc_feature 946432..946641 FT /note="HMMPfam hit to PF00486, DE Transcriptional FT regulatory protein, C terminal, score 8.8e-13" FT CDS 946671..947993 FT /transl_table=11 FT /locus_tag="BB0889" FT /product="putative two-component system sensor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3137" FT /protein_id="CAE31388.1" FT /translation="MSARPVSGNGSGSLTQRVVWALTGSVALFVTALVLLSYLTFDKME FT DDLVNDILSTETDRLIQHVAADDHFLPDRGARELGGAMRAWLVRAGAAQSDLPQPLHGL FT GVGMHLLEPGAETWHVMVADVEDARIYVLYDATDNEARVHDFGLFVLGVGAICIVAAYG FT ISRRVAGVAVGPLVELTRRLANWAPGAPDLAVTRDDEAGRLIEAFNRVQNQVDRSIARE FT REFSVNVSHEVRTPLAAIRSDSEMMLLAAGLDEGLRTRLVRIVANVDNVSTALESARAM FT ARDEPRAPERVDLAACMDDAWRGLEVNAEAAGLAFANRIPAGSAHVLDRYAMLTVLCNL FT VRNAIEHAAPATLTAALRPDGALELRDDGRGIAAEELPFVFQRFYSGRLRDSADNGSNE FT LPRGLGLAIAKRVCDMQGWQLSVDSERDGPARGTRFVLRFT" FT misc_feature join(946722..946790,947106..947165) FT /note="2 probable transmembrane helices predicted for FT BB0889 by TMHMM2.0 at aa 18-40 and 146-165" FT misc_feature 947118..947321 FT /note="HMMPfam hit to PF00672, DE HAMP domain, score 0.023" FT misc_feature 947331..947531 FT /note="HMMPfam hit to PF00512, DE His Kinase A FT (phosphoacceptor) domain, score 0.0003" FT misc_feature 947652..947987 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 2.7e-18" FT CDS 948073..950034 FT /transl_table=11 FT /locus_tag="BB0890" FT /product="putative sulfatase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3136" FT /protein_id="CAE31389.1" FT /translation="MRVFFCNEADEALALPPPTRNPVRRLTIRFAIAILVLLTLSRLGL FT SAWQWDRVQAAGGLGPIMLGGLRMDLRLLALVLALPAVLAPWFGHRAWAASATAWWYRV FT WWMLFVLLEVSTPQFIAEYDTRPNRLYFEYLVHPREVASMLWEGYKGVLLASFVVLVLA FT AWLAVRLFPTGRQDGFMKWWKRPFVTLAVLAVVVLAARGTLQHRPINASMVAFSSDAMV FT NTLPLNSLGNVLDAAYRLQDERSSAALYPPMKTEEMNRIVRAAAGLEDPPLDARYPSLH FT KQTATVRRDKPLNLVIILQESLGAQYVGSLGGRDLTPQLDRLAKDGWMFNRAYATGTRS FT VRGLEAVTAGFLPTVAEAVLKLPRSQTGFFTLADLLGRHGFHSRFIYGGEAHFDNMRGF FT FLGNGFNEVIDRQSFVDPVFVGSWGASDEDMFNQLDRLLRADDGKSTFTLAFSVSNHSP FT WEYPAGRIEPVGDPASVDNTVRYADWAMGQFFDKARKAPYWDNTVFLVIADHDSRVYGA FT NLVPVRHFQIPALILGGTVPPRSDDRIVSQIDMGPTLLSLIGLDNVNPMLGADLTQRDP FT NRAIMQYGDNFGYLKGDSLLVIEPGKDPREYRYTAAASMRDEKYIPIDIDPALRDEALA FT FALWPSWAYREERYKLPK" FT misc_feature join(948154..948222,948280..948348,948367..948435, FT 948523..948591,948628..948687) FT /note="5 probable transmembrane helices predicted for FT BB0890 by TMHMM2.0 at aa 28-50, 70-92, 99-121, 151-173 and FT 186-205" FT misc_feature 948949..950022 FT /note="HMMPfam hit to PF00884, DE Sulfatase, score 4.3e-06" FT CDS complement(950146..951459) FT /transl_table=11 FT /gene="fahA" FT /gene_synonym="fah" FT /locus_tag="BB0891" FT /product="fumarylacetoacetase" FT /EC_number="3.7.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3135" FT /protein_id="CAE31390.1" FT /translation="MSKLNETHDPALQSWVASANAADTSFPIQNLPFAAFRRKGTQDPF FT RPGVAIGDAIVDLAALAAQAPFDGTAAAALAACQGERLNALMALDQAHWSALRLALSRA FT LRTGSALQGRIEPLLVAQAEAEYTTPAHIGDYTDFYISVHHATAVGKQFRPDNPLLPNY FT KWVPIGYHGRASSIGVDQRFARPVGQTRPAAEGEAPQFGPCQRLDYELELGIFVGRGNA FT QGERIALGEAESHVFGLCILNDWSARDIQAWEYQPLGPFLAKNFASTISPWIVTLEALE FT PFRAAWTRDAADPQPLPYLESAENRAHGAFDVQMEVLISTEQSRAKHAQPALLSRSNFR FT DAYWNIAQLVAHHTVNGCNLQPGDMMGTGTLSGPQASEAGSLLELTNGGKQPLDLPWGE FT QRTFLQDGDQIIMRAECSKPGYPRIGFGDCVGTVLAAK" FT misc_feature complement(950323..950994) FT /note="HMMPfam hit to PF01557, DE Fumarylacetoacetate (FAA) FT hydrolase family, score 5.9e-55" FT CDS complement(951568..952866) FT /transl_table=11 FT /gene="hmgA" FT /locus_tag="BB0892" FT /product="homogentisate 1,2-dioxygenase" FT /EC_number="1.13.11.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3134" FT /protein_id="CAE31391.1" FT /translation="MSLQYQTGFGNACATEALPGALPAGRNSPQICPYGLYAEQLSGTA FT FTAPRAENRRSWLYRIRPGVQHLPFAPFAGAQRWLSDFGRQPVTPNQLRWSPLPMPDAP FT TDFIDGMHTWGGNGGPEEQSGVGIHLYAANRSMQGRFFYNADGEMLIVPQQGRLRLATE FT LGLIDIEPYEIAVVPRGVRLRVELLDDVARGYMLENFGTAMRLPELGPIGSNCLANARD FT FQIPVAWYEDVEGDFELIAKFTGGFWRAPIAHSPLNVVAWHGTHAPYKYDLRNFNTVGS FT ISYDHPDPSIFTVLTSPSDTPGTANMDFAIFPPRILAMENTFRPPWFHRNIASEFMGLI FT HGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQAHYIRDTMAFMFETRRV FT IRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA" FT CDS 953049..953957 FT /transl_table=11 FT /locus_tag="BB0893" FT /product="putative LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3133" FT /protein_id="CAE31392.1" FT /translation="MAELRNIDLNLLVIFQRLLQERSISAVARQLDLSQPAVSNALRRL FT RAACGDDLFVRTAQGMQPTPHAERLGGPVGEALALLSHALDATQDFEPQASTRRFRIAM FT SDVGEIHFMPRLMDQCARHAPGVRIDSLRLQGADLQREMDAGRVDLAIGAFADLGGAVM FT QRMLFRQGYATLYRQGHPSAHEGMSLKAFRAAHHLVVSHATPYGQVNQSLERAGVTLGE FT HFSVPHFAAVPYIVSTTDLLATVPQKLAASAAPHFGLGLLTPPLRMPTLQTNLYWHRRF FT QRDSGSQWLRALIVQAFADAP" FT misc_feature 953073..953252 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 9e-19" FT misc_feature 953112..953177 FT /note="Predicted helix-turn-helix motif with score FT 2098.000, SD 6.33 at aa 22-43, sequence FT RSISAVARQLDLSQPAVSNALR" FT misc_feature 953325..953945 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2.4e-17" FT CDS complement(953967..954176) FT /transl_table=11 FT /locus_tag="BB0894" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3132" FT /protein_id="CAE31393.1" FT /translation="MPLITTPNLAGPDNFYEALIDTHRDLSDEQSRELNAALILLLANH FT IGDMAVLRAALEHARQSVVAPPAP" FT CDS complement(954188..955867) FT /transl_table=11 FT /locus_tag="BB0895" FT /product="putative oxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3131" FT /protein_id="CAE31394.1" FT /translation="MGDIDYQAIEFAYTKCADQQRDTPARHCVIVVGAGPVGLTTALDL FT ARQGLRVVVLDDDYRLSTGSRAICFAKRTLEIWDRLGVGQRMVDKGVSWNVGKVFFRDQ FT EVWRFDLLPEPGHRRPAFINLQQYYAEGYLHELASAQPGIELRWKSKVVGVAQQADGVQ FT VTVDTPDGAYALHADWLVACDGARSPVRKLLDLETHGRVFKDRFLIADVKMAADYPAER FT WFWFDPPFHPNQSVLLHMQPDNVWRIDFQLGWNADPVEAVKPENVLPRIRALLGPDADF FT ELEWVSVYTFACERMDHFRHGRVVFAGDSAHRVSPFGARGANSGVQDAENLAWKLKLVL FT AGHAPESLIDSYAAEREYAADENILNSSRSTDFITPKSEVSRTFRNAVLNLARQHPFAR FT TLVNSGRLSVPAAYADSPLNTPDSDPYAGTMRPGAVALDAPVRADAQPGWWLSQLDGGF FT ALALFCGAETPRADMLDALRALQQGEVPVQPILVCDAGAAPAAAPAGVRVVEDSEGWLA FT RRYDARPGTCYLIRPDQHIAARFRAFDAQAVRRALARAIGRA" FT misc_feature complement(954764..955342) FT /note="HMMPfam hit to PF01360, DE Monooxygenase, score FT 1.7e-36" FT misc_feature complement(955364..955783) FT /note="HMMPfam hit to PF01494, DE FAD binding domain, score FT 7.5e-11" FT misc_feature complement(955763..955795) FT /note="PS00639 Eukaryotic thiol (cysteine) proteases FT histidine active site." FT CDS complement(955969..956988) FT /transl_table=11 FT /locus_tag="BB0896" FT /product="putative cyclase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3130" FT /protein_id="CAE31395.1" FT /translation="MHKNKRRAIFPSTHSYKWKEPTVSKQFASHADLEDKVVSFEKLSD FT NAYAYTAEGDPNTGIIVGDDAVMVVDTQATPVMAQDVIRRVREVTDKPIKYILLSHYHA FT VRVFGASAYGAQEILASRDTYDLIAERGEQDKASEIGRFPRLFRNVESIPPGLVWPTMT FT FKGEMTVDLGNLEVKLLQVGRGHTKGDTIAWLPEQKILFAGDLVEYQSTPYCGDCYFRE FT WPATLDALAGFEAEKMVPGRGPALKSATEVRQGLAGTRAFLTDLYAAVNRGVADGKDLK FT TIYREVYDFMKPRYSQWVIFDHCMPFNVSRAYDEATGHYDPRIWTDKRDIEMWQQLEG" FT misc_feature complement(956263..956838) FT /note="HMMPfam hit to PF00753, DE Metallo-beta-lactamase FT superfamily, score 5.5e-11" FT CDS complement(957012..957743) FT /transl_table=11 FT /gene="mutM" FT /gene_synonym="fpg" FT /locus_tag="BB0897" FT /product="formamidopyrimidine-DNA glycosylase" FT /EC_number="3.2.2.23" FT /note="ortholog of Bordetella pertussis (BX470248) BP3129" FT /protein_id="CAE31396.1" FT /translation="MRWPIPPALPDLLAGRTVLECGRRGKYLLLRFDHGVQIVHLGMSG FT SLRRVPEQEAPRKHDHVDWVFDHAVLRLHDPRRFGAVLWHPDEAGPIAAHPLLARLGIE FT PFDPRFDGRWLHAYFRGRRVAIKQALLAGDAVVGVGNIYASESLFRAGIDPRTAAQRVS FT AARCDRLAAAIRATLSDALDSGGSTLRDYVGASGEPGAYFAIHAAVYERAGLPCRVCGT FT PIRRLVQGQRATYFCPSCQKR" FT misc_feature complement(957021..957095) FT /note="PS01242 Formamidopyrimidine-DNA glycosylase FT signature." FT misc_feature complement(957021..957743) FT /note="HMMPfam hit to PF01149, DE Formamidopyrimidine-DNA FT glycosylase, score 4.9e-73" FT CDS 957838..959724 FT /transl_table=11 FT /locus_tag="BB0898" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3128" FT /protein_id="CAE31397.1" FT /translation="MSQCKIINCVYEDCAINRTGRVKLSLKHINFGVAALALALAGLQS FT LPAQAAEVRPRDATGPRLIQPSKQPETEVIRLRPGQLPYVSLTADIFYRIVGAELAAQR FT GMYGTAAATLVTLARETGDPRLARRGLEFQLAGGNLPGALDAARAWSSLAPNDIEASST FT ELALAAANGETSGLATALRKRIDTARDKPAAIVQAMGVLSRLNDRRLALRILDESLSDS FT ARKLPAAHLALADVAQAAGDYPRAANEAYAALAADPKSEAAAQRVLEYGAKVDATRAQH FT QARAFINRNPDARKLRLMLAGQIADGGDYDGALAELQAMARRSPEDFDLMFMQAQLAYK FT AGRLDQARGYLQQYLDVQNQRQMATAPGATDAGAAAADAHVLLSRIAEDQGRYDEAIRE FT LGRIDDPAMRYSAHMRQATLRARQGRIDDALAMVDRADPQDDEERTLGVLTKAQILRDA FT DQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYN FT ALGYTLADRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYA FT LRPEADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNRALLDTMRRLEVRP" FT misc_feature 957838..957987 FT /note="Signal peptide predicted for BB0898 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.999 between residues 50 and 51" FT misc_feature 958351..958374 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT misc_feature 958516..958617 FT /note="HMMPfam hit to PF00515, DE TPR Domain, score 10" FT misc_feature 958819..958920 FT /note="HMMPfam hit to PF00515, DE TPR Domain, score 25" FT misc_feature 959272..959373 FT /note="HMMPfam hit to PF00515, DE TPR Domain, score 0.7" FT misc_feature 959374..959478 FT /note="HMMPfam hit to PF00515, DE TPR Domain, score 1.6" FT misc_feature 959479..959580 FT /note="HMMPfam hit to PF00515, DE TPR Domain, score 0.32" FT CDS 959721..960320 FT /transl_table=11 FT /locus_tag="BB0899" FT /product="putative outer membrane lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3127" FT /protein_id="CAE31398.1" FT /translation="MSACPAPRSPFRWLHAFTLCLLLAVLAGCVSVPKPMAGAGEDVFS FT RVGRFAITVTESDGKQQAVQGGFAWRDDGGSYLLDLTNPLGSTEARVEGRPGMAVLTRA FT NGERLAAEHPDALAEDALGSPVPVTGLRDWLRGRLMAGAAPDGLERDAQGRPTAFEQDG FT WNARLSRYDAQGPQLLVLQRQEPGRRILVRLVITQP" FT misc_feature 959721..959831 FT /note="Signal peptide predicted for BB0899 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.796) with cleavage site FT probability 0.502 between residues 37 and 38" FT misc_feature 959757..959816 FT /note="1 probable transmembrane helix predicted for BB0899 FT by TMHMM2.0 at aa 13-32" FT misc_feature 959760..960275 FT /note="HMMPfam hit to PF03550, DE Outer membrane FT lipoprotein LolB, score 9.3e-09" FT misc_feature 959775..959807 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 960369..961268 FT /transl_table=11 FT /gene="ispE" FT /gene_synonym="ipk" FT /locus_tag="BB0900" FT /product="4-diphosphocytidyl-2-C-methyl-D-erythritol FT kinase" FT /EC_number="2.7.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3126" FT /protein_id="CAE31399.1" FT /translation="MTLYDVPAPAKLNLFLHVVGRRADGYHLLQTAFRFIDLADTLHFE FT ARADGAIGRAYELPGVAESDDLVVRAARSLQRATGTRQGAQIGLHKRIPQGGGLGGGSS FT DAATTLIALNRLWGTGLSRSQLMQLALPLGADVPVFVFGQSAFAQGVGEDLTAVALPPA FT AYLVVQPDAGVPTAAIFSDPDLTRDCASVTIADFLALPTFCFGRNDLEPVVLRRYPEVS FT GAVRWLFEHGLRVRMSGSGACLFAEFPTLPEAVLAQEEITATMRVAGKTTSHTHPGFRL FT VQASTGLTEHPLRNWIAS" FT misc_feature 960375..961214 FT /note="HMMPfam hit to PF00288, DE GHMP kinases putative FT ATP-binding protein, score 3.3e-20" FT tRNA 961270..961346 FT /note="tRNA Gln anticodon TTG, Cove score 77.70" FT CDS 961495..962427 FT /transl_table=11 FT /gene="prsA" FT /gene_synonym="prs" FT /locus_tag="BB0901" FT /product="ribose-phosphate pyrophosphokinase" FT /EC_number="2.7.6.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3125" FT /protein_id="CAE31400.1" FT /translation="MIFTGTANTRLAVDVVNHLDMSLGKMTVGRFSDGEVMVEINENVR FT GKDVFVLQPTCAPTNDNLMEIMVMVDALRRASAGRITAAIPYFGYARQDRRPRSARVAI FT SAKVVANMLQVAGVDRVLTMDLHADQIQGFFDIPVDNIYAGPILLGDIWRRNFSNLVVV FT SPDIGGVVRARALAKQLEADLAIIDKRRPRANVSEVMNIIGEVDGRTCIIMDDMVDTAG FT TLCKAAQALKDRGAGAVYAYCTHPVLSGGAIERIETSSLDELVVTDTIPLSEQGQACGK FT IRQLSCAALLGETILRISNAESVSSLFAD" FT misc_feature 961837..961866 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT misc_feature 961867..961914 FT /note="PS00114 Phosphoribosyl pyrophosphate synthetase FT signature." FT misc_feature 961888..962298 FT /note="HMMPfam hit to PF00156, DE Phosphoribosyl FT transferase domain, score 2.9e-36" FT misc_feature 962125..962163 FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT CDS 962550..963164 FT /transl_table=11 FT /gene="rplY" FT /locus_tag="BB0902" FT /product="50S ribosomal protein L25" FT /note="ortholog of Bordetella pertussis (BX470248) BP3124" FT /protein_id="CAE31401.1" FT /translation="MKFNATARSVQGSSASRRLRRAGRVPAIVYGGTAAPLNIELDHNE FT IYHALRKEEFHASILNMVIEGGKTEEVLLRSVQWHAYKPQVMHVDFQRVDANQALHTKV FT PLHFINAEVSPAVKLSGAIISHVLTELDITCLPALLPQFIEVNLGDLLGGGSIHLADIK FT LPKGVTFNAHGGDTNPLIAAAVVKGGGAADEGDAAAEQPAA" FT misc_feature 962556..962822 FT /note="HMMPfam hit to PF01386, DE Ribosomal L25p family, FT score 2.4e-27" FT misc_feature 963003..963035 FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT CDS 963242..963889 FT /transl_table=11 FT /gene="pth" FT /locus_tag="BB0903" FT /product="peptidyl-tRNA hydrolase" FT /EC_number="3.1.1.29" FT /note="ortholog of Bordetella pertussis (BX470248) BP3123" FT /protein_id="CAE31402.1" FT /translation="MRRVLYFTNTRPDAYATMSDPIRLIVGLGNPGPDYETTRHNAGFW FT LADHLADDLRTAFALEKGFFGMLAKARHAGENVVLLKPITYMNRSGQSVGAVARFYKLA FT PEQVLVLHDELDLLPGQVKIKQGGGHAGHNGLKDIQAALGSPNFWRLRIGIGHPRSLGL FT AQQVADFVLHPPRREEQQQIDTVIDRCRAVVPAMLAGDFALATRELHGANGA" FT misc_feature 963302..963871 FT /note="HMMPfam hit to PF01195, DE Peptidyl-tRNA hydrolase, FT score 6.1e-71" FT misc_feature 963344..963385 FT /note="PS01195 Peptidyl-tRNA hydrolase signature 1." FT misc_feature 963626..963658 FT /note="PS01196 Peptidyl-tRNA hydrolase signature 2." FT CDS 963886..964668 FT /transl_table=11 FT /locus_tag="BB0904" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3122" FT /protein_id="CAE31403.1" FT /translation="MSDVTTARQGAARATTFRQDLADCWRFLRRPTLSGRLPGRRADSG FT WASDWRPGVGASRLLAWAAVLWALNLFALGPIAVTVAGAGGAMHRLDPANIPWLTAILW FT APLVEELLFRYGLRRPAQALWFCPMVLPAILWGAQGWTLALVAVAVWLAWLSLRRGRAS FT LAGWDTSWRRYYSYRFGLVFHLVALTFAAVHLNNFSLSQTPVWLLPLLVLPQWATGLVL FT GWMRVRRGIGAAIALHALFNGGPVLMIWLLMTLMPAGA" FT misc_feature join(964060..964128,964282..964350,964411..964470, FT 964498..964557,964576..964644) FT /note="5 probable transmembrane helices predicted for FT BB0904 by TMHMM2.0 at aa 59-81, 133-155, 176-195, 205-224 FT and 231-253" FT misc_feature 964171..964632 FT /note="HMMPfam hit to PF02517, DE CAAX amino terminal FT protease family, score 0.015" FT CDS 964741..965832 FT /transl_table=11 FT /locus_tag="BB0905" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3121" FT /protein_id="CAE31404.1" FT /translation="MALQCGIVGLPNVGKSTLFNALTRAGIAAENYPFCTIEPNVGVVE FT VPDPRLDKLAEIVKPERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETNAIINVV FT RCFEDPNVVHVAGKVDPIADIEVIETELALADLQTAEKALHRHSKTARSGDKDAQRLVT FT VLEKCIAQLNQAKPVRGLDLSDEEQALIAQLCFITAKPAMYVGNVSDDGFTDNPLLERL FT AEFAKSRNAPMVAICAAIESEIVDLPEEDRQAFLSDMGMEEPGLNRLIRGAFTLLGLQT FT YFTAGVKEVRAWTIPIGATAPQAAGVIHTDFERGFIRAQTIAYEDFIACKGEQGAKEAG FT KMRAEGKEYVVKDGDVMNFLFNV" FT misc_feature 964741..964767 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 964765..964788 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 965987..983689 FT /note="Low %GC region. Unique relative to pertussis and FT parapertussis. In pertussis it is replaced with another low FT %GC region" FT CDS 966029..967240 FT /transl_table=11 FT /locus_tag="BB0906" FT /product="putative integrase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3120" FT /note="Similar to Escherichia coli integrase Int FT SWALL:Q93SE7 (EMBL:AJ278144) (394 aa) fasta scores: E(): FT 5.8e-38, 32.23% id in 394 aa, and to Shigella flexneri Int FT SWALL:Q9XCI7 (EMBL:AF141323) (394 aa) fasta scores: E(): FT 5e-38, 32.48% id in 394 aa" FT /protein_id="CAE31405.1" FT /translation="MPENLLTDLKVRSAQSTDRDWKLSDGGGLFLLVKFTGGRLWRWKY FT RLQGKENLFAIGGFPQVSLAEARAAREKARALVKQGIHPAHERRQVKQRNLEALEERKR FT ARESSFAKVAQAYLAEIKPVFALSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLE FT ECKAHGAWAAIHVKGDLSAIFEFAVVRGLAEANPIPSLRGLLRVPFSESKAAMTREQIQ FT KFYQELRGYRGYPETSLCLRLIALTACRPGEAADAEWDEFDFADALWRRPAAKMKARRD FT HVSPLPVQAIAVLKDLQCITGGGRYLFPHRSGKGFTTPNRLTYAMRDMNLGRGTTPHCW FT RTTFSTWANENGYRPDAIERQLAHVESNKVRATYNKALLLDQRRTLLQDWADYLSAAEG FT SGAA" FT misc_feature 966674..967180 FT /note="HMMPfam hit to PF00589, DE Phage integrase family, FT score 2.4e-16" FT CDS 967588..968634 FT /transl_table=11 FT /locus_tag="BB0907" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3118" FT /note="Similar to Methanosarcina mazei hypothetical protein FT Mm2606 SWALL:AAM32302 (EMBL:AE013505) (359 aa) fasta FT scores: E(): 6.3e-09, 22.75% id in 334 aa, and to FT Escherichia coli O157:H7 orf, hypothetical protein z5009 or FT ecs4465 SWALL:Q8XDJ0 (EMBL:AE005585) (431 aa) fasta scores: FT E(): 1.2e-08, 27.64% id in 322 aa" FT /protein_id="CAE31406.1" FT /translation="MHSLTPEYLAALRFDGTQAATLRTLGEYQGKQQLYAAQSPEALKG FT LRQIAVVESTESSNRLEGVVVAPSRLKSLVLRNAMPKNRSEQEIAGYRDALALIHESAT FT HMPFSEGVVLQLHTLLYRYMPQAGGRWKATNNDIIERHSDGTSRLRFQPVAAHLTPMAM FT ADLTGRYASALDQHLADPLVLVPLAMLDFLCIHPFPDGNGRMSRLLTLLLLYHFDYAVG FT RYISLERIFEETKEGYYETLEASSQGWHQGQHDVKPWLDYFWGALLRAYREFEERVGTI FT ERGRGSKGDRVRAEILGRSQPFSISEIEEACPGVSRDMVRLVLRAMKSEGLIESTGKGR FT GAKWIKRA" FT CDS 968645..971932 FT /transl_table=11 FT /locus_tag="BB0908" FT /product="putative helicase" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm0696 SWALL:Q9CMV8 (EMBL:AE006106) (1089 aa) fasta FT scores: E(): 0, 61.3% id in 1101 aa, and to Listeria FT innocua hypothetical protein Pli0027 pli0027 SWALL:Q926M9 FT (EMBL:AL592102) (1001 aa) fasta scores: E(): 4.1e-113, FT 50.14% id in 1031 aa" FT /protein_id="CAE31407.1" FT /translation="MELIDNISRLLGDDLKQTIRPGARLKIAASCFSMYAYEALKSELE FT KIDELDFIFTSPTFVADEVTDKIRKERREFHIPKLDRERSLHGSEFEIQLRNQLTQKAV FT ARECADWMRRKAKFRSNRSKAPMQQFACVEAGGAHSAYVPLHGFTAVDLGYSQGNAVSN FT LVNKVEAPFANTYLSLFDQIWSDPEKLEDVTAQICEYIASVYQENSPESIYFLMLYNIF FT NEFLDDIDEDVLPNDRTGYEDTLIWNKLFNYQRDAATGIINKLETYNGCILADSVGLGK FT TFTALAVVKYYELRNKSVLVLCPKKLADNWLNYNRNLKTNIFARDRFGYDVLCHTDLSR FT TSGESFGTPLNRINWGNYDLVVIDESHNFRNNDAFKDRETRYQKLMNKVIREGVKTKVL FT MLSATPVNNRFTDLRNQLALAYEGDSENLGKKLRTSKSVEEVFRNAQTAFNAWSRLPPE FT ERTPRAILGALDFDFFELLDSVTIARSRKHIQTFYDTKDIGHFPERRKPLSFHCSLTSR FT SDVMGFNEIFEHLSRLKLAVYAPVSYILPSRLRKYEEMYDTQVPGGAGKFRQVDREKSL FT QALMTTNLLKRLESSVQSFRLTLQSLQINHQNTLAKIAVFNQSGIAASVGDLTEVLESI FT DAEEDDPFEGLDQGGDVGGKVKISLADMDLPSWEHHLKVDLANIDALLASMSRITPADD FT AKLQHLKELVQGKITNPINPGNKKVLIFTAFADTADYLYANLAPDLLAHQQLHSGKITG FT SDRPKSTLPKAYDFQELLTLFSPRSKEKAIVLPNESAEIDLLIGTDCISEGQNLQDCDY FT LINYDIHWNPVRIIQRFGRVDRIGSPNSSIQLVNYWPDISLDEYINLKERVENRMMIVD FT VTATGDDNVISAQANDMAYRKEQLRRLQEEVIELEDLKTGVSITDLGLNDFRMDLLNYV FT KTHGELHRSPNGLHAVVPANPDLGLAPGVIFTLRNRSSGVNPPAHLPQHNRLHPYYLIY FT ISQAGEVIHDHTEVKRLLDLARSCCKGQAAPIADACQQFNKTTADGRKMQAYSDLLNQA FT IRSMIEVKEEKDLDSLFTGGKTTALTGTISGLDDFELISFLVIQEVG" FT misc_feature 969401..970258 FT /note="HMMPfam hit to PF00176, DE SNF2 family N-terminal FT domain, score 0.00014" FT misc_feature 970934..971152 FT /note="HMMPfam hit to PF00271, DE Helicase conserved FT C-terminal domain, score 1.1e-08" FT CDS 971929..972588 FT /transl_table=11 FT /locus_tag="BB0909" FT /product="conserved hypothetical protein" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm0697 SWALL:Q9CMV7 (EMBL:AE006106) (220 aa) fasta FT scores: E(): 2.7e-27, 38.63% id in 220 aa, and to FT Chlorobium tepidum TLS hypothetical protein ct0907 FT SWALL:AAM72142 (EMBL:AE012856) (252 aa) fasta scores: E(): FT 0.00094, 29.48% id in 234 aa" FT /protein_id="CAE31408.1" FT /translation="MSALIAYPKQAAFGRVLPKNKIYEHGGANTRLKDLFVKQVEQVIW FT QYKLAPETLHVPARPGVPEIQIFSIQLKTPELHADVLRCIDGAIPFPIVFELTFDGRTQ FT MVAAYKRPNEADASRCVLSGYFASDWLPMDSERTAMPVALHLGGLYEQLLHRLIPLSAR FT PQETLAELVARVEQAQAKQRELDKTTARLAKEKQFNRKVEINAELRKLRTELNGLK" FT CDS 972650..973645 FT /transl_table=11 FT /locus_tag="BB0910" FT /product="putative ATPase" FT /note="Similar to Rhizobium sp. hypothetical 37.6 kDa FT aaa-family ATPase Y4kL y4kL SWALL:Y4KL_RHISN (SWALL:P55530) FT (330 aa) fasta scores: E(): 1.8e-38, 41.41% id in 326 aa, FT and to Salmonella enterica subsp. enterica serovar FT Typhimurium putative ATPase s026 SWALL:Q9ADT7 FT (EMBL:AF261825) (329 aa) fasta scores: E(): 2.2e-28, 34.46% FT id in 325 aa" FT /protein_id="CAE31409.1" FT /translation="MATAKLLRQLIKTGTEGNQDAFKRVSEQLIHEERTKNHHLLANDL FT ERILYGRRNAGGGANSLLSDRIPKDKERNLPLLQIKEAVRRMEDVVLSDENASLLNELL FT QEHHRAEALQSYGLYPADRLLFCGPPGCGKTLTAEVLASELGLPLAIVRIDSVVSSLLG FT ETAANLRQVFDFIATVPMVVLFDEFDALAKERADTAEHGELKRVVNAFLQMLDAYEGKS FT ILVAATNHERILDAAIWRRFDEVLVFESPNLEQLRRLLSIKLRGLRREFEIEDARITSL FT FKGMSHADVERVLRRAAKDMVLTGKEFLSERHLQSSIRREDARRARIQGS" FT misc_feature 973016..973558 FT /note="HMMPfam hit to PF00004, DE ATPase family associated FT with various cellular activities (AAA), score 1e-42" FT misc_feature 973031..973054 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 973652..976006 FT /transl_table=11 FT /locus_tag="BB0911" FT /product="putative serine protease" FT /note="Similar to Rhizobium etli hypothetical protein yp094 FT SWALL:AAM55046 (EMBL:U80928) (823 aa) fasta scores: E(): FT 1.7e-08, 24.12% id in 858 aa, and to Agrobacterium FT tumefaciens hypothetical protein atu6083 atu6083 or FT agr_pti_160 SWALL:Q8U652 (EMBL:AE009427) (836 aa) fasta FT scores: E(): 3e-08, 25.19% id in 647 aa" FT /protein_id="CAE31410.1" FT /translation="MEENFPHLNIQREAPVNEKRSGNPPKPFIPDDIPAHGRGLLTKLG FT NAKEEANEDVGGFDERRLFRFTVQKGFNPDDLRKISTEIEFVSQEDETIVIGFATNAAL FT AQFEARLSSMAAGEHVTNKEVIYALQSVDGWSSENRKGWALKQQGFPDRDEFMLDVELW FT PLEDSHQARQQAWQAFEGWLAEQRIEKLDQIKKPELTLYRVRCTAAQAGMLLQHRDVRS FT IDLPPNFALERSVVFQDIQKIPDIQAPSAQAPGVVVLDSGIADGHPLLKVAVGEAKSFL FT PGEGPHDENGHGTHVAGLALYGDFEKHLRAGTFVPTLRLYSGRILDKNNENTTGFVENQ FT IEEAVRYFVREHGCKVFNLSFGDANKPYLGGHLKGLSVTLDTLSRELGVLFVVSSGNHR FT INERSPDGLEWRDQYPTYLSNDDWRLIEPAPALNALTVGSLARHNQTFNSQYHSADPAE FT LPIAQPDQPSPFTRSGHSVDGAIKPELTAYGGNWAINTRANYALLDRTAGLGVVSTNYQ FT FAGGHPFMVDVGTSMAAPQVAHLAASVLHEHPDATANFVRAQLCLNAVLPQASQQLLDQ FT HKALKRACGYGQVDETALHRSLENAVTLITDGKIENKRHHFYEIPVPPEFTSGGKKRLR FT EIAVALAYTPPVRSTRIKYRATRIDFRLVAARDLEHVTTMFNKATRKEDYQSIKELAGA FT SIGQVARSKGTVQADFWWFIQFQKDSALRTKKLFVVVTRNDFPWGENLCDSEESYSLLV FT SLRDKENLLAQLYTQIKARLDARVPPLRVRA" FT misc_feature 974357..975427 FT /note="HMMPfam hit to PF00082, DE Subtilase family, score FT 3.1e-06" FT misc_feature 974417..974452 FT /note="PS00136 Serine proteases, subtilase family, aspartic FT acid active site." FT CDS 976070..977911 FT /transl_table=11 FT /locus_tag="BB0912" FT /product="type III restriction-modification system FT methyltransferase" FT /EC_number="2.1.1.72" FT /note="Similar to Moraxella catarrhalis type III FT restriction-modification system methyltransferase Mod FT SWALL:Q93LB8 (EMBL:AY049056) (636 aa) fasta scores: E(): FT 2e-74, 37.9% id in 612 aa, and to Pasteurella multocida FT hypothetical protein Pm0698 pm0698 SWALL:Q9CMV6 FT (EMBL:AE006106) (636 aa) fasta scores: E(): 9.5e-69, 50.31% FT id in 644 aa" FT /protein_id="CAE31411.1" FT /translation="MHSPNLTEDNIARIRDLFPGCVTEARGEDGCVKLAVDFDQLRQEL FT SSSIVEGPQERYHLNWPGKREALLTANAPIAKTLRPVREESVDFDTTKNLFIEGDNLDA FT LKLLQETYLGKVKMIYIDPPYNTGNDFIYEDDFAEDARTFLVRSNQVDDSGVRLVANTD FT TNGRFHSDWLSMLYPRIKLARTLLSEDGVIFVSADDSEIANLIRICDEIFGEANFVANF FT IWEKRTNRENRKVVSSRHDYVVCYARNQMPGTRTLKQLPMSAKALANYKNPDNDPRGLW FT KSDPAHAQAGHGTKDQFYVLTAPNGKKHELESGRCWLYTEKVMNKEIADGKIWFGKDGN FT GVPRIKTYLDAKERGLTPESILFAEEVGTNESAKNLLKELFSGRAVFDTPKPVGLIQTL FT IQLSCDEGIILDFFAGSGTTAEAIFELNTMDGRERRFILVQLPEALTADSEAYKAGYRD FT IAHVGMERIRLAGKSFKGDTGFRVLKIDTSNMADVYYSPDALDKANLDLFVDNIKSDRT FT AEDLLFQVMLDWGVDLALPIEKKATQGKDVFFVDGNALVACFDAHGGVDETFVKELATH FT KPLRVVFRDAGFKDSAVKINVEQIFKLLSPSTEVKSI" FT misc_feature 976424..976444 FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT misc_feature 976616..977470 FT /note="HMMPfam hit to PF01555, DE DNA methylase, score FT 3.2e-13" FT CDS 977922..981008 FT /transl_table=11 FT /locus_tag="BB0913" FT /product="type III restriction enzyme" FT /EC_number="3.1.21.5" FT /note="Similar to Salmonella typhimurium type III FT restriction-modification system stylti enzyme res res or FT stm0358 SWALL:T3RE_SALTY (SWALL:P40815) (990 aa) fasta FT scores: E(): 1.2e-21, 26.35% id in 1017 aa, and to FT Pasteurella multocida hypothetical protein Pm0699 pm0699 FT SWALL:Q9CMV5 (EMBL:AE006106) (1043 aa) fasta scores: E(): FT 2.4e-134, 52.32% id in 1055 aa" FT /protein_id="CAE31412.1" FT /translation="MKLKFKTQAYQTAAVQAVVDCFKGQVPHHGGIRYRLDPGSQKVAP FT ESPQAALALEAASPEAAAEKEAAFRNADFTLSETALLDNIQAVQRGQNLPLSDTLVKTK FT VAKVNLDIEMETGTGKTYCYIKTIFELNKLYGWSKFIIVVPSVAIREGVAKSLEITAEH FT FLETYRKKARFFIYNSKQLHHLESFSSDAGINVMVINVQAFASRGAENRRIYDVLDDFQ FT SRRPIDVISANRPIMILDEPQKMEGAATLKSLEAFKALMVLRYSATHKTTHNKIHRLDA FT LDAYNQKLVKKIAVRGIAVKGLAGTAGYLYLQSIEISSKKPPEARIELEHKLANGDIKR FT VVRKLGKGDNLFDLSGGLDQYRNYVVTDINANTDTLSFTNGVELTVGDATGDVTEAALR FT RIQIREAIKAHFDKEQALFQQGVKVLTLFFIDEVAKYRDYTQADEKGEYARIFEEEYTQ FT YLNEMLDLDETAYVKYLKGIPVDKTHSGYFSIDKKTKRLADPTVAARGENAGLSDDVDA FT YDLILKDKERLLSLAEPVRFIFSHSALREGWDNPNVFVICALKHSDNTISRRQEVGRGL FT RLSVNQTGDRMDHPATVHEVNVLTVVASESYKDFVAALQKDISDSLSERPRVANEEYFT FT GKVLKTATGDVPVTPQLAKQIYRYLVKNDYTDDSDRIAGAYHDAKKAGTLADLPDELKP FT HAAQVYQLIDSVFSASQLPDIGDDRKPKKNPLNANFDKQEFKALWNRINRKAAYSVDFD FT SDELVQKAVKEMDAALRVTPLQYTIQAGEQIDQVTGEALKRGDGFKVAETQTEYNKQSI FT HSAVKYDLIGKLAEGTQLTRRTVAEILKGINLAVFAQFKTNPESFVAEATRLINEQKAT FT VIIEHLAYDPVEDKFDLDIFTAGQTKQDFSKADDKLQRHIYDYVLTDSKVEREFVKELD FT TANEVVVYAKLPRGFLIPTPVGDYNPDWAISFKEGAVKHIYFVAETKGSMSSMDLREIE FT KTKIKCARKFFDEMNRRYAPENVKYDVVDSFGKLMEVVK" FT misc_feature 979968..980033 FT /note="Predicted helix-turn-helix motif with score FT 1076.000, SD 2.85 at aa 683-704, sequence FT GTLADLPDELKPHAAQVYQLID" FT CDS complement(981172..981885) FT /transl_table=11 FT /locus_tag="BB0914" FT /product="putative integrase" FT /note="Similar to Salmonella enterica subsp. enterica FT serovar Typhimurium putative integrase s020 SWALL:Q9ADU1 FT (EMBL:AF261825) (321 aa) fasta scores: E(): 1.4e-05, 29.43% FT id in 214 aa, and to Francisella novicida hypothetical 33.7 FT kDa protein SWALL:Q9Z5W6 (EMBL:AF121418) (292 aa) fasta FT scores: E(): 1.2e-31, 41.94% id in 236 aa" FT /protein_id="CAE31413.1" FT /translation="MDDLTYTLRQLCQRNRDGSHNTQADRMRSLALTARQLREAGFRQM FT KDSSLKGKHVQALLERWQGEGLSSGTIKNRLSHLRWWAEKIGTAGILPADNTQLGVAER FT RYVTNISKARELGASLEQVTDVHVRVNLQLQAAFGLRREEAIKFQPCYADRGDHIALKG FT SWTKGGRKRTVPITTVEQRDMLQAAHRQAATGSLIPPHKTYIQQRHVYDGQCKAAGLNH FT THGLRHQYAQAAMRL" FT CDS complement(982505..983689) FT /transl_table=11 FT /locus_tag="BB0915" FT /product="conserved hypothetical protein" FT /note="Similar to Xanthomonas axonopodis hypothetical FT protein Xac2208 xac2208 SWALL:AAM37061 (EMBL:AE011858) (407 FT aa) fasta scores: E(): 8.9e-15, 33.06% id in 366 aa, and to FT Xylella fastidiosa hypothetical protein Xf1781 xf1781 FT SWALL:Q9PCJ8 (EMBL:AE004000) (418 aa) fasta scores: E(): FT 5.3e-14, 32.59% id in 359 aa" FT /protein_id="CAE31414.1" FT /translation="MQGNGPLWLRPWRTLMADHHTRHNSLGQDALFTTPASLMLDARLT FT PLERNGWQVLRMLRSAEGISPLANLGQLRRYLTSTPLGQRAGYETARRVLIVLRLTGWI FT SLVGQHRDPLTGHVLSELYQVHESALHFQQACALDASLPALLQGSIGNENNQVDRVAVH FT IQATLAQAPEAASIATHDQRHDDDDLPPTPPSQASEAADPLPLFDDSAGTTLVPQQTGH FT ARHMTAEQGSTYKTYMYKKERTYRAREGNGDPASQSVSLPPCLSNAQADQQKDVQAALR FT RLPPQHRQEVLDELQARSQSGTVRNLVAYFFALVKRVFAGEFRLWAGRKETSAAPRAAE FT NRPAGAPRTEDPPVPTAQPASRETALAHIAHIRKMLNASTNAGDIAAQAMQTRG" FT CDS complement(984031..988248) FT /transl_table=11 FT /locus_tag="BB0916" FT /product="autotransporter" FT /protein_id="CAE31415.1" FT /translation="MSIRNGGTAEIHDAARAEHLILGLGTLPSEIGHLIVRSAGSLTVG FT NQTSIGNDRGSSAISTLTIDGGTVTGGYGNFRVWHNGAVLLRGGGTLRTGTQGLALDGG FT RLEIGNAPGTLDSPYVWATPDDNVTGQLIFNHSAGDYEFAPAILQNVAVVHAGVGATTL FT VGENTYTGGTTLDAGVLGISANANLGNPNGALVFNGGTLRTTGFITMNRATALGAGNGA FT FDVASGASLTQQGIVSGSGALTKTGPGSLTLSGVNTYAGGTVIEAGTLRIAQSGNLGTG FT PLTLNGGTLEATAPLTLYADTWIDGGGTISTTSSLTLEGSINGRAGVKISSGPTGTVIL FT NGAHNALPTAFVTGQSTLQVNGTLEAIIDIGGASRLSGSGTVGNTSIQHGSTLSPGQSS FT IGTLTVNGDLTLHDGSILDYQLGGPGTSSDPASGIGSRVNVTGNLTLNGALNLRSSSDT FT AQDGVPGLGYYRLMTYGGTLSGTGLSIGSTPVFSDPAHFEIQAGGGNVDLFIAALGHDT FT LQHWQGGDGAWNSANAQWLNRNGEVAAGWAGNQAVFKNQPGGFGGGTITVAGMQQFKGL FT QFVDDGYRLEGSGQLVIDGSERGDGNAEIRVLANSAEIATEITGSGGITKTDAGTLVLS FT GNNSYQGSTHILSGAVSIASDRNLGATGAGILLSGGTLATTADMAIGRNITLAGNGGFD FT VAAGTTLAATGPIGGTGALVKTGAGTLRLAGANLYAGGTRVRQGVLIGDTASIRGNIAN FT DGEVAFQQATDGVFAGDISGSGLMRKLGAGSLALAGRNTQDWAVDTGPLRSAGSRFAGD FT VAIGANGIFVLDDAQAAAYAGTLSGTGRFHKQGAGSLLLTGDSASFTGHATVSAGTLRV FT GDRHGGGVLGGSLDVQAGATLGGSGTVGSGAGSQVTVASGGTLAPGNSVGTLTVNGDLV FT LDKGSRFEVEVDPQGTRSDQVAVTGNTTIQGGAVAHVGATGQYQLRSTYTLLTTGGALS FT GRFDTVSSDFAFLTPELRYDYGAGTVGLALARNDRSFASMALTDNQYATAQGIDSIGVA FT AGHAVYDAVAQLPDDAPLVRASLDALSGEIHASAKTALIEDSRFVRDAAKDRVRAAFAA FT PGASTAAVSARAADGAPTAVAATHDGPAAWSQAFGSWGSTDSDGNAARLERNVGGVLIG FT ADRLMGNWRVGALAGYSQTDAKARDRASSGRSDNYHLGLYGGTQSGALGVRTGLAYSWH FT DIRTRRSVDIPGLSDSLRADYGGGTFQAFGELGYGIELNDTTRLEPFASLAYVRLHTDG FT YRESGGAAALTTGSANTETTFSTLGLRAEHALGSGAAQGTVRATAGWRHAMGDTTPQAR FT HAFSAGDAFTVAGAPIAQDSAVIELGVDLAVARNTRFGLSYAGQIAGSAQDHGVRADLS FT IRF" FT misc_feature complement(984037..984891) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03797, DE Autotransporter FT beta-domain, score 8e-46" FT CDS 988824..990395 FT /transl_table=11 FT /locus_tag="BB0917" FT /product="putative regulatory protein" FT /protein_id="CAE31416.1" FT /translation="MSIPSVRYADLVFQPDLRAATRDDGAKLSLTRQERALILQLTERP FT HQLITRQQLLEGLGDLAGELSERNIDYLVNRLRKRLGDNARTPRFIATQYGEGYIWVAD FT PIAVAPVSAFLLIGPVYGLGENEQAAAVVKRLGGHIGQALHGSRKVLCLPQWRFEPETA FT SHIAHSLEISLWPEDGQLHMALVLKDGRSNTPIRPFRLTVPLAGENAELAAFAQSLADA FT IWAHAALPGGEPPNPTDRPLLLRLHDAAVLVTGDIESWRHNAQRLRAAHADNPDDPALA FT VLLALNRYTELIQGPLSPDTPPLTDVQWRGIEDDIEQLALGALAKARSEPMLLLGIAKV FT LCFIDRGYLKLAATLTEEAFEASTAFAAAFTMKALTLACQGEIDRAVDLYDRAIELAET FT GSQFHIYLLILKGSALLAADRRGEVAQMVAELSALDPASRGWVGLIFLSPKSKRTPPAL FT AMIPKEAGRRMLTYLHRTTARQFERRHHQKNVLHGLAIHLARVHGADVIPSPLREYFPK FT RFADAS" FT misc_feature 988899..989117 FT /note="HMMPfam hit to PF00486, DE Transcriptional FT regulatory protein, C terminal, score 1.5e-09" FT misc_feature 989922..990023 FT /note="HMMPfam hit to PF00515, DE TPR Domain, score 0.027" FT CDS complement(990446..991450) FT /transl_table=11 FT /locus_tag="BB0918" FT /product="putative exported protein" FT /protein_id="CAE31417.1" FT /translation="MYRRILAAAAAAISALLPLHASADSYPSKPISLVVGFAAGGGSDV FT LTRAFAKYLNAEIGVPIVVENRPGADSLLASQAIKNAKPDGYTIYLATSTHAVNPSLFS FT EAKFKVRDDVTPISMIGEAPVAIAIAPMLPTRTLQEFIDYAKAHGGQLNYGTSASNTYL FT ETAYMLRAAGLDMQRIPYKGAAPASVALMSGEIQLLLSTVGHLAPLVQSGKVRALAVTS FT AGRSTLMPDLPTTREAGMPDFMPNLSTANDAGLPNVTSSIWYALLAPPGVPADVVKRLN FT QSTQAVLRNPEFMSQMVTMGVELRPSSPEGLGQFLEAEEAKWQKIVDDIGARQ" FT misc_feature complement(990455..991315) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.6e-62" FT misc_feature complement(991382..991450) FT /note="Signal peptide predicted for BB0918 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.955 between residues 23 and 24" FT CDS complement(991824..992564) FT /transl_table=11 FT /locus_tag="BB0919" FT /product="putative TetR-family transcriptional regulator" FT /protein_id="CAE31418.1" FT /translation="MPHSVDDSSLVTRRRAQLVKAAIKLFSRMGYHAATVKDIAQEAGV FT SAGLMYQYVPDKQDLLFLALQHIVQRNKEEVPSALLGVEDPIARLYRAIDAYTRVMAAN FT QQAVLLTYRETKSLKPEYIEQMKQLELDTNRLIEACATDCIRAGYLAPTNVELLVYRII FT IAAHAWPLKHWRLRRIVTLDEYLDQAIHAAWKDLLLPRGSSRYEELRRAGELRPVHLAG FT ESDDGASRAAGTEPKKRARRGRAA" FT misc_feature complement(992373..992513) FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 7.9e-14" FT misc_feature complement(992385..992477) FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT misc_feature complement(992400..992465) FT /note="Predicted helix-turn-helix motif with score FT 1024.000, SD 2.67 at aa 34-55, sequence FT ATVKDIAQEAGVSAGLMYQYVP" FT CDS complement(992791..993738) FT /transl_table=11 FT /locus_tag="BB0920" FT /product="putative membrane protein" FT /protein_id="CAE31419.1" FT /translation="MQMDLSKIQFGVDVATSLAILASAITFLINQRLKTRETKRRQLDE FT SVRAVTVDEFQSALGNLSTAYVKEIVRHTVPLQASVSRGLERLEKSLELDPKRANVLMD FT AMANTTQAISDYINAICAYNYQIYPLLDSIEGGESQIQEFRRNLQRLMDSYNNIGRGHE FT SLFKEVRALCDFCAAHPLEQADHEALQRMAMSIVADKDYRQWVDSFVPSGKEEAYWACV FT DKGDFEGEKDLLMRVVSNVIGGFYKAPARMQAQVIYLAYSAIIDARQQCKEFLVGMAAI FT NYWLIRKGGGSESLPDVIQRYRSQAVFAVDSEIR" FT misc_feature complement(993652..993711) FT /note="1 probable transmembrane helix predicted for BB0920 FT by TMHMM2.0 at aa 10-29" FT CDS 993954..995129 FT /transl_table=11 FT /locus_tag="BB0921" FT /product="putative membrane protein" FT /protein_id="CAE31420.1" FT /translation="MNRNLWLLSVLQGLFLTNNVTFIAINGLVGFALAPYGWMATLPVM FT GYVVGGALCTGPVAWTQKRYGRKGSFMLGLLVAAGSALLCAFAAYIGNFWLLCAATAIA FT GYYSANGQLYRFASAELAAPGAREKAVSLVMAGGLLGAVVGPNLASFTKELFVTPFLGA FT YLALAVVALLAMAVLARIEFPEVAQRASANGGRPLSVIARQPAFIVATGAGALGYGVMN FT LLMAATPLAMQHHGLPFADAAFVLEWHVIGMFAPGFFTGHLIKRFGVLPIMGWGAALNL FT VCIGVALSGVELHHFTVSLFLLGVGWNFLFTGSTTLSLSTYTAEEKDRAQAAMNFCVFA FT VMAVTSLTSGMLVTTRGWTVLNVGSLVPMLMICVGLAWLAWRKAPSRAAVG" FT misc_feature join(993972..994040,994053..994121,994158..994226, FT 994236..994304,994341..994409,994437..994505, FT 994566..994634,994662..994730,994749..994817, FT 994845..994913,994947..995015,995025..995093) FT /note="12 probable transmembrane helices predicted for FT BB0921 by TMHMM2.0 at aa 7-29, 34-56, 69-91, 95-117, FT 130-152, 162-184, 205-227, 237-259, 266-288, 298-320, FT 332-354 and 358-380" FT CDS complement(995176..995961) FT /transl_table=11 FT /locus_tag="BB0922" FT /product="GntR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3452" FT /protein_id="CAE31421.1" FT /translation="MRHPRMGAGYTIRSPSWPFLPDRTSMTRQPQSADIEELPLGRTSK FT SLPEQVADRLMQSIQTGVLQPGERLKEETLSDRFAVSRTTVREAISTLERRGVIERVPR FT FGARVREIRADEIEEIFCIRAQLLGLAARRVAEHGDDEILAQLRQQVERLRQLADKPST FT SPASYAKVSIETQQLLIQAVGWKQLGTMYEGLSNQMLWKTSVRGKSLSFQSQQRRRESV FT GDWQRLLEAVCARDAAAAEESAKLLLGASYRAVRGQLAS" FT misc_feature complement(995635..995811) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 4.8e-16" FT misc_feature complement(995683..995757) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(995958..997619) FT /transl_table=11 FT /locus_tag="BB0923" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3453" FT /protein_id="CAE31422.1" FT /translation="MNPTLAARTGGRILVDALKVHGVDQAFCVPGESYLPVLDALRDDA FT QAIRLTVCRQEGGAAFMAEAYGKLTGKPGICFVTRGPGATNASIGVHTAFQDSTPMILF FT VGQVGADVAEREAFQEIDYRRMYGQMAKWVASIDDAQRIPEFVHRAHQVALSGRPGPVV FT LALPEDVLRATAHAADRVPHRIARACATSADMKRLHELLAAARRPLLIVGGGGWNEAAS FT AAITRYAERAGLPVATAFRRQDRFDNRHPCYAGHIGLGIAPSLARHVRQADLLLVVGAR FT LADATTDSYALITPEHPGQTLIHVHPDPQELGRVYPADLPIAADVQAFAAQLDACDNPP FT ARCDAWLRELADDYRTDLAVAPSRRDTDLAQVMHWLNQHLPQNAIVTNGAGNYAGWVHR FT YFQYSPQRRQLAPTNGAMGYGVPAAIAAKLAAPARTVVCFAGDGCFMMNGQELATAIQH FT DAAVVFIVVNNGMFGTIRMHQEMHYPGRVSGTSLRNPDFVALASAYGAHAERVAHHDDF FT PAAFERACASGRAALIEIRTDPAAISARRDLPTLAA" FT misc_feature complement(996015..996536) FT /note="HMMPfam hit to PF02775, DE Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 2.8e-51" FT misc_feature complement(996288..996347) FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT misc_feature complement(996570..997049) FT /note="HMMPfam hit to PF00205, DE Thiamine pyrophosphate FT enzyme, central domain, score 1.8e-16" FT misc_feature complement(997083..997604) FT /note="HMMPfam hit to PF02776, DE Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 5.9e-46" FT CDS complement(997694..998659) FT /transl_table=11 FT /locus_tag="BB0924" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3454" FT /protein_id="CAE31423.1" FT /translation="MQRIFEKAALALALVAMPLWAGVACAQQPLRMMVGFPPGGTTDVI FT ARLVAQRLGGELSRSVVVENRAGASGNLAAATVAKADPDGSTLLFAPSSHATNASLYTN FT QSFDTVKSFRAVGMVAVTPYVLVVNPGMQATNLRDFVDYLKRNPGKVEFASASPGTGQH FT LAAELFKDEAGVDIMHVPYKGSAAALPDLIAGRVPMMFDNIAVMLPHIQQGTVRPLAIT FT SKTRSRFLPDTPTMAESGYPDFEVLGWFTLLAPAKTPDATVQAYNDALKKISADPDFVA FT QLAKLGGEAVARTPAQADAYIAEEVDKWGKVIRTAHINLN" FT misc_feature complement(997706..998527) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.2e-107" FT misc_feature complement(998582..998659) FT /note="Signal peptide predicted for BB0924 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.798 between residues 26 and 27" FT misc_feature complement(998585..998617) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(998714..999622) FT /transl_table=11 FT /locus_tag="BB0925" FT /product="putative taurine dioxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3455" FT /protein_id="CAE31424.1" FT /translation="MSDITVRPLGYAAGAAVSGIDLRQALQPEQLARLRAAWHEHLVLV FT FPGQDLNAPQLIDFTRHFGDVERNDSVPYYRDPDYPEVLLVTNKPRDGKPSQTRNTGRN FT WHSDLSYTDRPAKGSVLMCKEKPPVGGDTMFANMYQAYESLSAPFKRFVDGLHAVHDIS FT LIKGFDRRDPEQTAALKRRNPPIAHPVVRIHPETGRKCLFVSDRVRTFVGMTEEESRPI FT LDFLNRHATSPEFVYRHRWSVNDIVMWDNRCTLHIALPDFDQSKPRHMMRCSMLGEPSG FT YVIEDAPLDEQAARSAIAAVS" FT misc_feature complement(998768..999613) FT /note="HMMPfam hit to PF02668, DE Taurine catabolism FT dioxygenase TauD, TfdA family, score 3.4e-57" FT CDS complement(999929..1002217) FT /transl_table=11 FT /gene="maeB" FT /locus_tag="BB0926" FT /product="NADP-dependent malic enzyme" FT /EC_number="1.1.1.40" FT /note="ortholog of Bordetella pertussis (BX470248) BP3456" FT /protein_id="CAE31425.1" FT /translation="MKDTDRQAALDYHAYPHPGKISVTATKPLVTQRDLSLAYSPGVAA FT ACEEIVEDPANVFRYTGRGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGL FT DVFDIEINETDPDKLVEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQ FT HGTAITVCAAVVNGLAVAGKRIEDVKLVTSGAGAAALACLDLLVDLGLPLEHIWVTDIE FT GVVYEGRKKLMDADKERFARKTKARTLAEVIEGADVFLGLSAGNVLKPEMVATMAANPL FT ILALANPNPEILPEAAHAVRDDIIMATGRSDYPNQVNNVLCFPYIFRGALDVGATTITR FT EMEKAAVLAIANLAREEQNEVVAAAYGTYDISFGRDYLIPKPFDPRLIVRIAPAVAKAA FT MEGGVATRPIADLDAYAEQLQQFVYHSGAFMKPLFSQAKQIVRDGGRARIVFTEGEDER FT VLRAVQVIVDEKVAKPILVGRPQVLLSRIEKFGLRLRLGQDVEVCNPEYDERFHQYWTT FT YWDMMCRNGITKEMARVEMRRRLTLIGAMMVHLGDADGMICGAVSGFHDHLRFIDQVIG FT RKPGATTYAAMNILLLDERTVALVDTHVNEDPSAEQIAEYTVAAAEEMQRLGLAPKVAL FT LSRSNFGSGSSASGAKMRHALELVNRQAPGLEIDGEMHGDCALDESLRLRLLPDSPLKG FT SANLLVCPNVDSGNIAYNLLKTVAGKNVAVGPILLGANAPVHIVTSSATVRRIINMAAL FT CVLDANRPQ" FT misc_feature complement(999953..1000936) FT /note="HMMPfam hit to PF01515, DE Phosphate acetyl/butaryl FT transferase, score 4.7e-104" FT misc_feature complement(1001018..1001731) FT /note="HMMPfam hit to PF03949, DE Malic enzyme, NAD binding FT domain, score 1e-115" FT misc_feature complement(1001735..1002166) FT /note="HMMPfam hit to PF00390, DE Malic enzyme, N-terminal FT domain, score 1.3e-73" FT CDS 1002335..1003330 FT /transl_table=11 FT /locus_tag="BB0927" FT /product="LysR family regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3457" FT /protein_id="CAE31426.1" FT /translation="MILLRSVPMTGSPSVDAAEIVRRLTSRLKMRHLQLLLHVRQLGSL FT TRVAQQLSTSQPAVTNALAELEDMFGAPLFQRTARGMTPTPLGLVVLARAEAIIHDLRH FT LVDDMGASASGYTARLHLGVTPFVSSRLIAAAIGRAQRADHRLAASVHDGISGKLLAGL FT RDHSLDVVVARAGPALDVEGIVFEPLYVQQPRLIASRRLAARLARRALDWSALAELDWI FT LGVPQTAMRDQVASLFMQAGIRPPAATTECHSAKLIGELIAASDRALSIVPADIADELV FT SVAGVAIVPFSFTWHLPPIAVFMRHESQGSAPHRLFAEALREECRHARAG" FT misc_feature 1002422..1002601 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.9e-20" FT misc_feature 1002461..1002526 FT /note="Predicted helix-turn-helix motif with score FT 1636.000, SD 4.76 at aa 43-64, sequence FT GSLTRVAQQLSTSQPAVTNALA" FT misc_feature 1002464..1002556 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1002671..1003312 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2.1e-19" FT CDS 1003582..1004523 FT /transl_table=11 FT /locus_tag="BB0928" FT /product="binding-protein-dependent transport systems inner FT membrane component" FT /note="ortholog of Bordetella pertussis (BX470248) BP3458" FT /protein_id="CAE31427.1" FT /translation="MLSYTLRRLLMTLPVMLFVALFVFGLLDLAPGDPAALLAGEDATP FT QDIARIRATLGLDQPFLQRFAEWGWNVLHGDLGTSLFTGLPVSHMIGQRLVPTFSLMLM FT TLLVSVVIAIPIGALAAWKHNRLQDRGIMVLAVFSFSVPSFAVGYLLAWIFGLQLRWFP FT VQGYVPLATGFWASVHTLVLPALALGSVYVALITRITRATLLETLSQDYIRTARAKGVG FT NRGLLFRHALKNAAVPIITVIGSGVALLISGTVVTETVFSIPGLGRLVVDAILRRDYPV FT IQGVILLFSFMYVLVNLLVDLLYRAFDPRIKY" FT misc_feature 1003582..1003698 FT /note="Signal peptide predicted for BB0928 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.977) with cleavage site FT probability 0.590 between residues 39 and 40" FT misc_feature join(1003606..1003674,1003876..1003944,1003981..1004049, FT 1004092..1004160,1004296..1004364,1004422..1004490) FT /note="6 probable transmembrane helices predicted for FT BB0928 by TMHMM2.0 at aa 9-31, 99-121, 134-156, 171-193, FT 239-261 and 281-303" FT misc_feature 1004191..1004406 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 1.2e-06" FT misc_feature 1004194..1004280 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1004523..1005356 FT /transl_table=11 FT /locus_tag="BB0929" FT /product="binding-protein-dependent transport systems inner FT membrane component" FT /note="ortholog of Bordetella pertussis (BX470248) BP3459" FT /protein_id="CAE31428.1" FT /translation="MSNIAGFLKRHPTTAVGGGLLLLLFLMAVCAPWLGTVDPTALSPI FT HRTRAPSEQFWFGTDLLGRDVYSRVIYGARVSLIVGFTVAALSTVIGVVIGLAAGFVRW FT VDAVVMRIMDGFMSIPTILLAIALIALTRASLQNVIIAITIAEVPRVVRLVRGLVLSLR FT EQPYVEAAVAAGASRLRIVARHIFPNTLAALMVQATYICGVAILAEASLSFIGAGVPPS FT VPSWGNIMAEGRALWQIKPHLIAFPAVFLSITILAINMLGDGLRDAVDPRMAKRI" FT misc_feature 1004523..1004615 FT /note="Signal peptide predicted for BB0929 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.747) with cleavage site FT probability 0.319 between residues 31 and 32" FT misc_feature join(1004565..1004633,1004751..1004819,1004847..1004915, FT 1005078..1005146,1005249..1005317) FT /note="5 probable transmembrane helices predicted for FT BB0929 by TMHMM2.0 at aa 15-37, 77-99, 109-131, 186-208 and FT 243-265" FT misc_feature 1004997..1005227 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 2.3e-08" FT misc_feature 1005000..1005086 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1005360..1007210 FT /transl_table=11 FT /locus_tag="BB0930" FT /product="ABC transporter ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3460" FT /protein_id="CAE31429.1" FT /translation="MTTTTTQSRRVLELENLSIAFGRGVHTFHAVKSLSLHVDRGETLA FT IVGESGSGKSVTSLAVMRLVEFGGGRIESGRMTFYRGAGEAVDLAAASEDSMRAMRGND FT LGMIFQEPMTSLNPVFTVGAQIVEAIRLHQACDARAAQAAAKRILDQVRIPDSASILGR FT YPHELSGGMRQRVMIAMALSCKPALLIADEPTTALDVTIQAQILQLIRELQREMDMGVI FT FITHDMGVVAEVADRVLVMRKGDVVENNDVHGLFNAPSHPYTKALMAAVPRLGAMQGTT FT APARFALLSDAQARHEAEPPAVAPSDKVVLRVRDLVTRFDVRGGIFARVKKRVHAVEQV FT SFDLHAGETLSLVGESGCGKTSTGRSLLRLAKTTRGQIEFDGKPVRQEDPASLRALRRN FT MQFVFQDPFASLNPRMRVGDCVKEPMLIHNLYSGAQADRRAAELFERVGLDAAMMQRWP FT HEFSGGQRQRICIARALSVDPKVLIADESVSALDVSIQAQIVNLLIDLQRDLGVSYLFI FT SHDMAVVERISHRVAVMYLGQIVEIGPRQAIFENPQHPYTKKLMQAVPIADPGARRSIT FT LELSELPSPARPVGDEPVVKPLEQAGPGHFVARHRIGGAY" FT misc_feature 1005480..1006091 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.3e-52" FT misc_feature 1005501..1005524 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1005861..1005905 FT /note="PS00211 ABC transporters family signature." FT misc_feature 1006398..1006970 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 7e-58" FT misc_feature 1006419..1006442 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1006740..1006784 FT /note="PS00211 ABC transporters family signature." FT CDS 1007279..1008871 FT /transl_table=11 FT /locus_tag="BB0931" FT /product="bacterial extracellular solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3461" FT /protein_id="CAE31430.1" FT /translation="MDRRSFLLASSATAAAWALPGMSWAAPGKSAFRWVPQADLALLDP FT MFTTVAMTQVHAQLVFDTLFGLDSQYLPSPQMAAGHTSENDGLLWKITLRDGLAFHDGS FT PVRAQDAVASIKRWSKRDLMGRSLMQATESLTALDDKTIQFKLSKPFPLILHALGRQSG FT NMACIMPERLASQPETEAVKEMVGSGPFTFAAAKWVSGSRVVYEKFAGYVPRKDDRKPD FT FAAGPKIAHVDEVHWHIIPDRATAIAALQANEVDGVEMVDSDFLPILTQDPNIKLVKRS FT LPTIGVMRFNHLHAPFNNVEIRRAVLSVVNQTEYMTAMNGADFPEYWSDRCGVFVPGSP FT MDSDAGMEKLTGKRDIEKARAAIKAAGYNGEKVVLLDPVDFPTWHAAALVTADLFKRLG FT FNVDLQTMDWGTAVQRRNNQEPVSAGGWSVAFTGNTGPNNLDPAGHLPMRGNGKQAWFG FT WPTSERLEQLRIDWFNAPDLDAQKKICREIQLQVFEDVPYIPLGATYPVSALRSEWKDF FT QPQMSLFYTLHKA" FT misc_feature 1007279..1007353 FT /note="Signal peptide predicted for BB0931 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 25 and 26" FT misc_feature 1007288..1008865 FT /note="HMMPfam hit to PF00496, DE Bacterial extracellular FT solute-binding proteins, family 5, score 4.3e-15" FT CDS 1008890..1010428 FT /transl_table=11 FT /locus_tag="BB0932" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3462" FT /protein_id="CAE31431.1" FT /translation="MSSNAPKVAILGFHLESNAFSPLSVEADFLAQCWEQGEDITRLAR FT GASRLPSEVPGFYARMDELGAWTPAPLIVIGAPPGGPASAGVWRRFLAEAETRLRAALP FT VDAVYVANHGASSAEGQDDTEGELMGRLRAIVGPGVPIVASHDLHCNVSEQTVQALDGL FT ISYRTNPHVDQRERAADAADMIHEILGGTRMVSAYVRLPLTPPSVTLLTSSGPYADLVA FT LGASLIQKPDEGPIANVSVCSGFVFSDLPKCGLTITVTARGDLQAARRAALRIARAGWA FT DRKRYVANTVEVARAVELARAAGQPLLFADVADNPGGGGGGNTAWLLRAFHEARIPGVV FT LGVFVDPELAAQAAQLGEGAEFDAVFNRIETDYARRYQARARVLRLTDGEGMGRRGILR FT GRKFSLGASCLLELVDSGMRVVVGSLRRQLAEPAMLEMHGIDIARAGHVVVKSRGHYRA FT GFDEFFPDDRIHDVDSLGLTTPNLKQIAFKRLPRPVWPLDDAAAWQEPDWAEGL" FT CDS complement(1010522..1011463) FT /transl_table=11 FT /locus_tag="BB0933" FT /product="LysR family regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3463" FT /protein_id="CAE31432.1" FT /translation="MLNTALRYFLEVVDAGSLTLAAQKLHVAPSAVSRMVRKLEDEHQA FT QLFERHARGMVLTEAGQLLKAYARRASLDAERARAEIRELSQIGQKLIRVSANQAFGRE FT LLPRVIGEFREIEPTVRFELNILQSSEINRRVREGEDDIGLSYNLAPPQDVHVQYARRM FT PLFAVMAPQHPLAGRDMLSMQDIGDYPVVLMGPGSTNRFFIDLCCMHEKIELNIAMTCN FT NQGAIQTCCQQWGAISFSGDLTVMTPTERGELVSIPMANSELHQRIMHIQTMAGRQLPA FT SVGRFVQALASRIDASYADPAWLAAGRGSGAL" FT misc_feature complement(1010579..1011208) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.2e-31" FT misc_feature complement(1011278..1011457) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.3e-23" FT misc_feature complement(1011353..1011418) FT /note="Predicted helix-turn-helix motif with score FT 1700.000, SD 4.98 at aa 16-37, sequence FT GSLTLAAQKLHVAPSAVSRMVR" FT CDS 1011533..1012372 FT /transl_table=11 FT /locus_tag="BB0934" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3464" FT /protein_id="CAE31433.1" FT /translation="MIAPPLARHARVCRWPRRAISIYIRMIKKRYLATAVVALAVAVAA FT ALYARQDEPEHFDEVVLQCLDDQAMSTVRRTGSVDGILPACQPELAEVLGEDFGAVDEP FT TLRAVLATVAAANFAEYGSSSAVAYEAIEKSQHLNCGNLVFLMGYLYGGLKEKGIRPIG FT VDGGAVGNHAQIMYKSGNNRLLLDPTTGVVAAITFNKLMSGQPVPEEQVRVFRVKAKTI FT DSFRDRVYRAVVGGGYLPSDLMYMHESLWELKTKGSSSVYFTPGGITVRKKLAQAAG" FT misc_feature 1011533..1011679 FT /note="Signal peptide predicted for BB0934 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.495 between residues 49 and 50" FT misc_feature 1011623..1011676 FT /note="1 probable transmembrane helix predicted for BB0934 FT by TMHMM2.0 at aa 31-48" FT CDS complement(1012434..1012940) FT /transl_table=11 FT /locus_tag="BB0935" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3465" FT /protein_id="CAE31434.1" FT /translation="MTRQHSTQPDPKLDLVLERTIDVPPALVWQAWTQPEHIKHWLTPA FT PWQTVRCDVDLRPGGRFRFVMRSPEGEEHTHDCCYLEIVEGSRLVWTNALLPGFRPAGG FT GGDVPAFTAVIRIEPHDQGTRYTATAMHGTQAGCRQHSDMGFHDGWGAALDQLVAHARN FT MQQAS" FT CDS complement(1012937..1013275) FT /transl_table=11 FT /locus_tag="BB0936" FT /product="putative ArsR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3466" FT /protein_id="CAE31435.1" FT /translation="MPNQAAQLSQVFQALSDPTRRAVLERLCQGSAAMSELARPFNMAL FT PSFSQHLDVLERCGLVRSRKSGRVRIYTLAPQPLGMAEHWMTRQRAIWERRLDQLDLYL FT QDLKEQKR" FT misc_feature complement(1012997..1013242) FT /note="HMMPfam hit to PF01022, DE Bacterial regulatory FT protein, arsR family, score 1.1e-11" FT CDS 1013713..1016232 FT /transl_table=11 FT /locus_tag="BB0937" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3467" FT /protein_id="CAE31436.1" FT /translation="MKTWFKRIVIGLVVLVVVAVVGLAIFLLTFDPNAYKYKLEEAVQA FT RYERTLNIEGEIELSLFPRIGLAVQGVSLSEPNSPDVFASIDSMRLAVAVWPLLSNSLV FT VDHVTINGFKARVIRGKDGHFNFENLVGGSVQSTDVPGNAAEATAGAITGTAQAIVNGT FT VSTPKSMQIDIAGLDLKDGEIQLQDAMSGMAVAITKLNAATGRVTYNQPFDVSLSARVE FT GGNPRLDAGLTGQAQLTLDPLAKRYAAQRLDLRMEGRLPGAQAKSLAARGNVAFNGMTS FT SLDVAGLEILFQGDIVDTATKLTNVEASVAMPKLAVDPHKTELQIDKLAVRAKGAMPGG FT PFELAVDAPALNISPTNASGDALSGRVRTQELDASFGLNGISGNAGELDIKEAKLDSTL FT KQGERVVKSAFASPVTLNLLQRSIGLSALKGDVNITDPGLPKGSLQIPVIGSVNANLLK FT DQANARINAVLEGGKFDLSADIVALSAVPRVTFALAVDTLDLDKLAPPAGASAPPKPAG FT DGKQDESKPPAKPQPAPAPAAADDSINLSGLVGPTASGTIKIGQLVMRGLKAEQVAANI FT KLEKGKLDISTLTAALYGGKLGGVMSVDAVNGNQLVAKMSLAGIAIQPLLSDLAGKDTL FT SGTGSLAFDLKTAGANTYAMKSGLAGTMQVRLRDGAIKGINVAQTLRELKAMFRGEAHD FT PTVQDDQTRQTDFTSLESDLVFNKGVATVKRLDMAAPLLRVNQGNPANIDFVRSELDFV FT ARVRVVNTSTGQDGKDLAELRNLTIPLLITGPFDKPVYTLQWREVAGEALKRGLEKQLK FT EALTGGEGASGSPAKNIDKALKGILGK" FT misc_feature 1013713..1013769 FT /note="Signal peptide predicted for BB0937 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.261 between residues 19 and 20" FT misc_feature 1015774..1015845 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT CDS 1016229..1016615 FT /transl_table=11 FT /locus_tag="BB0938" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3468" FT /protein_id="CAE31437.1" FT /translation="MSTTAYQPIAECGATTQSEAAAYQKRWLVANDAGQWLNRDLCPRL FT AEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWI FT SNHAGVPCRILKVHPDMAEVRWPS" FT CDS complement(1016623..1017840) FT /transl_table=11 FT /locus_tag="BB0939" FT /product="putative transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3469" FT /protein_id="CAE31438.1" FT /translation="MNGADSASSPLAARRPVTGALSLSAIVAGLVAVLVSFGGTAVLMV FT QAGHAAGLDAARIGSWLGSICLALGVGGALISLRSRMPVVFAWSTPGAALLVTGLVGVP FT FDQAVGAFVLAAALTLACGVFGWIDPIVRRIPAELAAAMLAGVLLNFGMGIFGSIAAQP FT VLVLSMCAAYLLGRRWAPRFAVLAVLVVGLAAASSLDLLRLGHVQWAWTEFVWTTPSFT FT WQAAISLGIPLFVVAMASQNLPGLAILQAAGYRPPASRLVGLTGLAGLLAAPFGAHSVT FT LGAIIAALCAGPEAHADPGRRYVAAATYGLTYVLLSVAAGAVAVFFQALPGALIAALAG FT LALLGAIMGGMTTAMADPQRREAALVTLLATASGISFWGIGSAFWGLAAGLATHGALAW FT RRARSA" FT misc_feature complement(1016653..1017786) FT /note="HMMPfam hit to PF03594, DE Benzoate membrane FT transport protein, score 5.2e-157" FT misc_feature complement(join(1016683..1016751,1016788..1016856, FT 1016866..1016934,1016971..1017039,1017097..1017165, FT 1017226..1017294,1017358..1017426,1017460..1017519, FT 1017532..1017591,1017610..1017669,1017712..1017780)) FT /note="11 probable transmembrane helices predicted for FT BB0939 by TMHMM2.0 at aa 21-43, 58-77, 84-103, 108-127, FT 139-161, 183-205, 226-248, 268-290, 303-325, 329-351 and FT 364-386" FT misc_feature complement(1017691..1017840) FT /note="Signal peptide predicted for BB0939 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.678) with cleavage site FT probability 0.546 between residues 50 and 51" FT CDS complement(1017837..1018088) FT /transl_table=11 FT /gene="fdx" FT /locus_tag="BB0940" FT /product="ferredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP3470" FT /protein_id="CAE31439.1" FT /translation="MALKITEECINCDVCEPQCPNEAISMGADYYVIDPDRCTECVGHH FT DEPQCKVVCPVECIELHPQWQEGQEQLMAKYRRLTGAA" FT misc_feature complement(1017909..1017998) FT /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain, FT score 0.13" FT misc_feature complement(1018014..1018085) FT /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain, FT score 0.00024" FT misc_feature complement(1018029..1018064) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT CDS complement(1018143..1018652) FT /transl_table=11 FT /gene="coaD" FT /gene_synonym="kdtB" FT /locus_tag="BB0941" FT /product="phosphopantetheine adenylyltransferase" FT /EC_number="2.7.7.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3471" FT /protein_id="CAE31440.1" FT /translation="MIIAVYPGTFDPLTRGHEDLVRRAATLFDKVVVGIAHSRNKKPFF FT TIEERVDIAREVLGHYPNVEVHSFGGLLKDFVRDQNGRVIIRGLRAVSDFEYEFQMAGM FT NRHLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVERWLQAKAKERREQ FT SAQGGA" FT misc_feature complement(1018254..1018652) FT /note="HMMPfam hit to PF01467, DE Cytidylyltransferase, FT score 1.4e-38" FT CDS complement(1018673..1019293) FT /transl_table=11 FT /locus_tag="BB0942" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3472" FT /protein_id="CAE31441.1" FT /translation="MKPSRPGSKPIRIVGGLYRRTLIPVADAPGLRPTPDRVRETLFNW FT LNHLWGGEFADKRVLDLFAGSGALGFEAASRGAGQVQMVERDRGAAAALRTLRDKLQAG FT AVRIHAGDAMQVIERMDASRFDLVLLDPPFGQGWLERLWPLLPAVLAEDGLVYVESETA FT PAPPAGFELLREGKAGAVHYRLFQFAAMRKSMNNPALEDGASH" FT misc_feature complement(1018733..1019263) FT /note="HMMPfam hit to PF03602, DE Conserved hypothetical FT protein 95, score 1.4e-56" FT misc_feature complement(1018892..1018912) FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT CDS 1019501..1020568 FT /transl_table=11 FT /gene="ftsY" FT /locus_tag="BB0943" FT /product="cell division protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3473" FT /protein_id="CAE31442.1" FT /translation="MPAPQPEPQPEPQPQQPPEPAPPAMASPPVAEPQPPVAEPQPPVA FT AAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEK FT LLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNGAGK FT TTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFD FT SVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQ FT NALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDL FT QPFVADEFAAALLAD" FT misc_feature 1019666..1019911 FT /note="HMMPfam hit to PF02881, DE SRP54-type protein, FT helical bundle domain, score 1.7e-11" FT misc_feature 1019942..1020562 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00448, DE SRP54-type protein, FT GTPase domain, score 7.5e-97" FT misc_feature 1019969..1019992 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1020615..1022213) FT /transl_table=11 FT /locus_tag="BB0944" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3474" FT /protein_id="CAE31443.1" FT /translation="MSEQELKLHVPAAARAAVQQQIQQRQAARIRLHAMYFDTPGRELA FT RARIAIRLRQEGRDWVQTLKMPGANAISRVEINHPRPGPVLDLSVYAGTEAQAALTAIK FT GELGLRYETDVQRLFCKVRGRHGTVELAYDTGVLRAGALELPISELEFELVSGRPAAIF FT AMARSWLQRHGLVLDARSKSERGDALAQLAHDLAAAPGEADDAARATRDQQAVAGFWAP FT RNAGAVKLDESMTPMQAMAAVAAECVDHIARNAAVLAEVDTLGVYRAGTPEHVHQLRVG FT VRRLRSAWRLFDGWIADPSETLAQGARTHFSAFGMARDQDVLADTIMPLLARAGMPALP FT AEAAPSNDNAQSLAADRAFQGWLLELLAWSLDVPPPPAPAATAEAAAASPTIIPLAPPA FT EAAPPALRKRLTGRLRRWHLKVIDEGLRFGALELEARHELRKRVKRLRYGLSFAESLLP FT AARLRTYRKQLARVQDLLGEINDLAVARDYYQAALQAHPQAWFAVGWIGARLDGLTPQA FT QEAFDQLAHAKPFWK" FT CDS complement(1022454..1023275) FT /transl_table=11 FT /locus_tag="BB0945" FT /product="binding-protein-dependent transport system FT permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3476" FT /protein_id="CAE31444.1" FT /translation="MNTSVTSLEPGHPRTWQRYSGGQKALRFMLYLLLVAAIVQAVRSV FT EVIPEFLYDAPEQMADLLRRMWPIDWSYYPEGVHAALVETLHIATLGTILSVGMAVPVG FT LLAANNLTPSRTINMLARLILVSSRSVNSLVWALLFIAIFGPGALAGTLAIAFRSIGFV FT GKLVGEAIEEAQRGPIEALTATGASKAAVLWYGYWPQIRPSFWSIVLLRWDINVRESAV FT LGLVGAGGIGMALDTALNLFQWDRVALVLAAIFIVVVAAEIVITQARKRIL" FT misc_feature complement(join(1022478..1022537,1022550..1022618, FT 1022808..1022876,1022937..1023005,1023150..1023203)) FT /note="5 probable transmembrane helices predicted for FT BB0945 by TMHMM2.0 at aa 25-42, 91-113, 134-156, 220-242 FT and 247-266" FT misc_feature complement(1022538..1022768) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 0.00032" FT CDS complement(1023272..1024162) FT /transl_table=11 FT /locus_tag="BB0946" FT /product="binding-protein-dependent transport systems inner FT membrane component" FT /note="ortholog of Bordetella pertussis (BX470248) BP3477" FT /protein_id="CAE31445.1" FT /translation="MTVRTANMARRPFSLSWRAKTGVLLVVLYTFYAAAQLDFSWARFE FT TGLGHAATFLARMFPPNFEKPDTLWKGIAESLEIAVLASVLGILLSLPIGLLGARNLMP FT AWASWPARALVALCRALHPVIVAILFVKAVGFGALAGILALTVASIGFIGKLFTEAIEE FT ISLKQVEAVRASGASFGNVIIFGVLPQVFARFVGFATYQFDSNLRNSTMVGIVGAGGIG FT GTLFSAFQRFDYDFVAAILLTLIAIIMLGEILAGFVRKVFLDNMGFERILQRRFTAARG FT LGSTTPLARKGEVDE" FT misc_feature complement(join(1023389..1023457,1023476..1023535, FT 1023563..1023631,1023692..1023760,1023770..1023829, FT 1023866..1023934,1024058..1024126)) FT /note="7 probable transmembrane helices predicted for FT BB0946 by TMHMM2.0 at aa 13-35, 77-99, 112-131, 135-157, FT 178-200, 210-229 and 236-258" FT misc_feature complement(1023473..1023685) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 0.00015" FT misc_feature complement(1024058..1024162) FT /note="Signal peptide predicted for BB0946 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.950) with cleavage site FT probability 0.849 between residues 35 and 36" FT CDS complement(1024159..1024929) FT /transl_table=11 FT /locus_tag="BB0947" FT /product="putative transport system ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3479" FT /protein_id="CAE31446.1" FT /translation="MATSLRITGLVKEYRAGKPVLNGIDLDIAGQGLTAIIGPSGTGKS FT TLLRCINRLIEPTSGEIVLKDAEGTVDLARVRGQSLRRARRRIGMVFQEYNLVERLTVM FT ENLLTGRLGYTSALNAWMRRFDPADIERAFQLLDTVGLAGFADQRADALSGGQRQRVGI FT ARALMQRPQLLLADEPTSSLDPKTSVEIMELLTEQGSVNGIPVLVNIHDVELARRYANR FT IVGMSGGHVVYDGDGKGLDATMLKTIYGGESWLE" FT misc_feature complement(1024243..1024839) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.9e-55" FT misc_feature complement(1024429..1024473) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1024795..1024818) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1024932..1025939) FT /transl_table=11 FT /locus_tag="BB0948" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3481" FT /protein_id="CAE31447.1" FT /translation="MRAKRLLQAAAVTALIFGSYAAQAADAACSNRGDLDNMYCDANKD FT LVADTPTDKSKLKTPSTLVFTYTPVEDPAVYEDIFKPFTKHLSECTGKRVVFYQVQSNA FT AEIEAMRSGRLHVGGFSTGPTAFAVNIAGAVPFAVKGYADEFQGYNLIVIVKKDSPYQK FT LTDLKGKKLAHTAPSSNSGHMAPVALFPKEGLTPDKDYKVIFSGKHDQSVMGVNSGDYD FT AAAVASDVFKRMAERGQVKEEDFRVIYRSEKFPTSSFAYAHDLEPAFRDKMLKCFYDYR FT FPDEMKKAFDGADRFYPVTYQKDWAIVREVAESGGEKFNRAAYDRETAKSKGKQ" FT misc_feature complement(1025868..1025939) FT /note="Signal peptide predicted for BB0948 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.923 between residues 24 and 25" FT CDS complement(1026088..1026915) FT /transl_table=11 FT /locus_tag="BB0949" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3482" FT /protein_id="CAE31448.1" FT /translation="MSAAKSTAKPAAAPGNDGRRSIQSVEVGFPLLAALVDAGRPLTLR FT DLAGAAGMTSAKAHPYLVSFTRVGLVQQDTVTGQYELGPFALQMGLVSLQRLDPVRVAL FT PEVDKLQSEIGHTLGIAVLGSHGPTMIHITEASYPVHVNMRKGTVMSMLHTATGQVFAA FT WLPPKVAEHYIAREDGDAAVIASLTPRKTTRANLDAMLADIRVHGMARALGNPLPGVDA FT LSVPVFDHTGGIVLALTSLGPTGLFDASFTGAIARPLLACAQEISRKLGYRGN" FT misc_feature complement(1026109..1026678) FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 3.4e-12" FT CDS complement(1026921..1027700) FT /transl_table=11 FT /locus_tag="BB0950" FT /product="haloacid dehalogenase-like hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3483" FT /protein_id="CAE31449.1" FT /translation="MPAPVAASVRIVLTDIDDTLTTEGRLPAGAYAALERLEQAGIVVV FT PITGRPAGWCDHIARMWPVRAVVGENGAFYYAYDRSARRMNAHYWADAATRAANRQALQ FT AIRERVLREVPGTAVASDQDYRVADLAIDFCEDVPALPDGAVGRIVEIFHEAGAQAKVS FT SIHVNGWFGDYDKLTMTRTLFEREFGLNIDSALQHTLFIGDSPNDEPMFKFFPISVGVA FT NIQSQLHRIQHRPAFVAAARGGDGFVEMAERLLANRG" FT misc_feature complement(1027026..1027676) FT /note="HMMPfam hit to PF00702, DE haloacid FT dehalogenase-like hydrolase, score 0.011" FT CDS 1027864..1029039 FT /transl_table=11 FT /gene="ribB" FT /locus_tag="BB0951" FT /product="putative 3,4-dihydroxy-2-butanone 4-phosphate FT synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3484" FT /protein_id="CAE31450.1" FT /translation="MSAQISSLNAGAAPESFGIASVPEIIAELRAGRIVILVDEEDREN FT EGDLVMAAEFVTPEAINFMVTHGRGLVCLTLTEERCRQLDLPLMASRNGTRYGTNFTQS FT IEAAEGVETGISAADRARTIQVAVARDAQPSDLVQPGHIFPVRAVPGGVLVRAGHTEAG FT CDLTAMGGLTPAAVICEILKPDGTMARLPDLVEFAREHKLKIGTIADLIQYRSEHESII FT ARMGERMMQTPWGDFRCIAYRDDATRSPHLALVHGNIDPERETLVRVHEPASLLDVLDT FT GASPHSWSVGQALHAIAASPAGVLVLMNCQSSTEHLFGQIANWAGPAERAAAQEGDRFG FT LRTYGIGAQILRDLNVGRMKLLARPRKMPSMAGFALTITGYDCAPPNLRND" FT misc_feature 1027927..1028514 FT /note="HMMPfam hit to PF00926, DE 3,4-dihydroxy-2-butanone FT 4-phosphate synthase, score 4e-111" FT misc_feature 1028521..1029015 FT /note="HMMPfam hit to PF00925, DE GTP cyclohydrolase II, FT score 9.2e-08" FT CDS 1029053..1029580 FT /transl_table=11 FT /gene="ribH" FT /locus_tag="BB0952" FT /product="putative 6,7-dimethyl-8-ribityllumazine synthase" FT /EC_number="2.5.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP3485" FT /protein_id="CAE31451.1" FT /translation="MNPYILTPDLNGEGLHIGIVRARFNEEIGQAQLQACLEELGKLGV FT DERDVMVVSVPGALELGVALARMAESYEFDALIALGAVIRGETYHFEVVSNESAAAISR FT IALETGIPVANGVLTVDTDEQAQARAAGKGADCAQVAVEMANLAAALEPEEDDEDEDDE FT DEDFDDEEDDGR" FT misc_feature 1029086..1029505 FT /note="HMMPfam hit to PF00885, DE FT 6,7-dimethyl-8-ribityllumazine synthase, score 1e-43" FT CDS 1029588..1030052 FT /transl_table=11 FT /gene="nusB" FT /gene_synonym="ssyB" FT /locus_tag="BB0953" FT /product="N utilization substance protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP3486" FT /protein_id="CAE31452.1" FT /translation="MQARANARSARRRAREFALQGVYAWLLRGGEGTQDAGEIDAHLRD FT AEDFSEADAQWFKTLLHGVLREAPVLRERFLPYIDRPLAELSPVEHGILLIGSFELMHH FT VEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKLAADVRTAEVQAAPRR" FT misc_feature 1029621..1030016 FT /note="HMMPfam hit to PF01029, DE NusB family, score FT 7.1e-21" FT CDS 1030092..1031108 FT /transl_table=11 FT /gene="thiL" FT /locus_tag="BB0954" FT /product="putative thiamine-monophosphate kinase" FT /EC_number="2.7.4.16" FT /note="ortholog of Bordetella pertussis (BX470248) BP3487" FT /protein_id="CAE31453.1" FT /translation="MLAGVALASEFDLIARYFTRPAPDGVLGVGDDCALFPVPPGQQVA FT TSTDLLIEGRHFFPDVDPQALGHKALAVNLSDLAAMGARPVGCLLGLALPGVDEAWLAA FT FARGFQALADTHACPLIGGDTTRAPQGLLAISVTVFGAVAPGHALRRAAAQPGDDVWVS FT GELGAADIAYRLLDRQLPADPLRLAATRAALEWPRPRVELGMALAGLARAGIDISDGLL FT QDLGHILAASGVAAELRYDALPVAAALAGLPAETVRRAALGGGDVYELCFTADPAHRQA FT IGQAAHGAGAPVSRIGRILAGQGLRVLDADGAPLGELPGGFDHFSDATDQPAPGRRP" FT misc_feature 1030554..1031021 FT /note="HMMPfam hit to PF02769, DE AIR synthase related FT protein, C-terminal domain, score 0.00078" FT CDS 1031105..1031647 FT /transl_table=11 FT /locus_tag="BB0955" FT /product="putative phosphatidylglycerophosphatase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3488" FT /protein_id="CAE31454.1" FT /translation="MNPPDANPDPTSMQARTRVSYPSWSWVRARPARLLAFGLGSGLLR FT PASGTWGTLLAWLSWFVFAPLAPDWALGMGIAAAFAYGCLACGQAGRELGVSDHVGMVW FT DEIVAFWLVLWLVPQTVAAQALAFVLFRVFDIAKPPPIKYFDARIKGGFGVMWDDIVAA FT AYTLLVMAILVRMGVFT" FT misc_feature join(1031225..1031293,1031312..1031380,1031423..1031491, FT 1031558..1031626) FT /note="4 probable transmembrane helices predicted for FT BB0955 by TMHMM2.0 at aa 41-63, 70-92, 107-129 and 152-174" FT CDS 1031644..1032210 FT /transl_table=11 FT /locus_tag="BB0956" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3489" FT /protein_id="CAE31455.1" FT /translation="MSLHDTQGRAGLAPTPLTAAAIQGLAEMVGEALLRRDWMMGTAES FT CTGGLLAGAVTSVAGSSDWFERGFVTYSNAAKVAELGVSGETLDHYGAVSEPVALEMAN FT GVLLATPSAQVGVSTTGIAGPGGATPGKPVGMVCFGFAMRAHGGITSRAITHVFPGDRA FT QVRNASVEFALRGILEFLGEPVNRG" FT misc_feature 1031707..1032186 FT /note="HMMPfam hit to PF02464, DE Competence-damaged FT protein, score 2.9e-62" FT CDS complement(1032377..1033198) FT /transl_table=11 FT /gene="pyrF" FT /locus_tag="BB0957" FT /product="putative orotidine 5'-phosphate decarboxylase" FT /EC_number="4.1.1.23" FT /note="ortholog of Bordetella pertussis (BX470248) BP3490" FT /protein_id="CAE31456.1" FT /translation="MTFLKKLEHAWSASQSLLQVGLDPDPKRFPRELEGKPDAIFQFCR FT DIVDATAPYACSFKPQIAYFAAHRAEDQLEALCQHIRAQHPDLPIVLDAKRGDIGSTAE FT NYAREAFERYQAHALTVSPYMGLDSVEPYLAWGDRGVIVLCRTSNPGGSDLQFLKMADG FT QPLYLHVAGLVADKWNANGQCGLVVGATFPNELAAVRQRIGDAVPLLVPGIGAQGGDIN FT ATVQAGANSAGAGMMINSSRAILYASTGEDWRQAAGEAARGLRDAINAVRT" FT misc_feature complement(1032431..1033153) FT /note="HMMPfam hit to PF00215, DE Orotidine 5'-phosphate FT decarboxylase / HUMPS family, score 1.5e-36" FT misc_feature complement(1032890..1032931) FT /note="PS00156 Orotidine 5'-phosphate decarboxylase active FT site." FT CDS complement(1033206..1034525) FT /transl_table=11 FT /gene="ndh" FT /locus_tag="BB0958" FT /product="putative NADH dehydrogenase" FT /EC_number="1.6.99.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3491" FT /protein_id="CAE31457.1" FT /translation="MTQTPNTGSPHRVVIVGGGAGGLELAAKLGRAHGRERVTLVDSRP FT FHIWKPSLHEAAAGTLDIHQEGLSYLMLANMCNFTFAQGELQGIERERRQIQVGPVADP FT SGQQVLPPRELSYDTLVLAMGSTSNFFNTPGAAEHAVTLDTTENAEQFRLTMLKAMVQV FT DLRKVHDPSARLDLVIVGGGATGVELAVELIEASHVVSAYGLPNFRADRDLVITLVEGA FT PRILSALPEKISRAAHARLTELGVRVETDCRVAEVGADHVVTADGRRFEATMCLWAAGI FT EGPPLFRQLGLPLNRLGQLEVNERLESPDPHILALGDCCAAPWKDGRTVPARAQAAHQQ FT ADYLARKLTARLRNAAEPTEAYAYHDHGSLVSLGQGSGVGSLMGKLAGRGLFVSGTLAR FT LMYMSLHLMHHRAVLGISRTATLALARLLMRRTRPRVKLH" FT misc_feature complement(1033530..1034492) FT /note="HMMPfam hit to PF00070, DE Pyridine FT nucleotide-disulphide oxidoreductase, score 1.3e-38" FT CDS complement(1034576..1034974) FT /transl_table=11 FT /gene="dgkA" FT /locus_tag="BB0959" FT /product="putative diacylglycerol kinase" FT /EC_number="2.7.1.107" FT /note="ortholog of Bordetella pertussis (BX470248) BP3492" FT /protein_id="CAE31458.1" FT /translation="MAHTPHPSPFKSTGGLRRILNALRYSLQGLKAAIKYEAAFRQELV FT LAILLVPAAFFLGRTTDEVFILIASVILVLVAELLNSAIEALADALSVETHPLLGRAKD FT LGSAAVMLMLLFTLAVWVAVLISRFVLD" FT misc_feature complement(join(1034582..1034650,1034714..1034782, FT 1034801..1034860)) FT /note="3 probable transmembrane helices predicted for FT BB0959 by TMHMM2.0 at aa 39-58, 65-87 and 109-131" FT misc_feature complement(1034594..1034929) FT /note="HMMPfam hit to PF01219, DE Prokaryotic FT diacylglycerol kinase, score 2.1e-33" FT CDS complement(1035063..1035953) FT /transl_table=11 FT /gene="brkB" FT /locus_tag="BB0960" FT /product="serum resistance protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3493" FT /protein_id="CAE31459.1" FT /translation="MRLPRQIRLPHLRDIGALLTDSAREWSRHRASSKGAALSLYMVFS FT LAPMLILVIAVAGAFFGEEAVRSELFSQVRDLTGERGAEVIQTVLASAHESGSGWLAAL FT LSICVLVFSATTAFAELKASLDELWDVKEDKSGLQGLVRSRMLSFGLVLVLALFLLLSL FT TLNAALGAAKGYYGDLWSTSAFAMAADWLSNLFSFAVVTALFAVVYKLLPSKRIPWLDV FT IPGAIVTAALFLAGKWGIGLYLGRGAAVSAYGAAGSLIALLLWIYYSAQIFFFGAVFTR FT QFAERFGSLRRAAPA" FT misc_feature complement(1035093..1035875) FT /note="HMMPfam hit to PF03631, DE Ribonuclease BN-like FT family, score 7.7e-80" FT misc_feature complement(join(1035126..1035194,1035222..1035290, FT 1035327..1035395,1035438..1035506,1035591..1035659, FT 1035774..1035842)) FT /note="6 probable transmembrane helices predicted for FT BB0960 by TMHMM2.0 at aa 38-60, 99-121, 150-172, 187-209, FT 222-244 and 254-276" FT CDS join(1036255..1036605,1036608..1039286) FT /pseudo FT /transl_table=11 FT /gene="brkA" FT /locus_tag="BB0961" FT /product="serum resistance protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3494" FT misc_feature 1036255..1036380 FT /note="Signal peptide predicted for BB0961 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.649 between residues 42 and 43" FT misc_feature 1038003..1038368 FT /note="HMMPfam hit to PF03212, DE Pertactin, score 4.1e-71" FT misc_feature 1038453..1039286 FT /note="HMMPfam hit to PF03797, DE Autotransporter FT beta-domain, score 6.7e-77" FT CDS complement(1039390..1041033) FT /transl_table=11 FT /gene="cpn60" FT /gene_synonym="groEL" FT /gene_synonym="mopA" FT /gene_synonym="groL" FT /locus_tag="BB0962" FT /product="60 kDa chaperonin" FT /note="ortholog of Bordetella pertussis (BX470248) BP3495" FT /protein_id="CAE31461.1" FT /translation="MAAKQVLFADEARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFG FT APTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAVVQEGL FT KYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPVTTSKEIAQVGSISANSDASIGQIIA FT DAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINSPEKQVAALDDPYVLI FT YDKKVSNIRDLLPVLEQVAKSSRPLLIIAEDVEGEALATLVVNNIRGILKTTAVKAPGF FT GDRRKAMLEDIAILTGGTVISEETGMSLEKATLQDLGQAKRIEVAKENTTIIDGAGDGK FT SIEARVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVEDA FT LHATRAAVEEGVVPGGGVALLRAKQAITGLKGDTADQNAGIKLILRAVEEPLRTIVTNA FT GDEASVVVNTVLNGKGNYGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTA FT EAAVVELMEDKPAAAPAMPGGMGGMGGMDF" FT misc_feature complement(1039459..1040967) FT /note="HMMPfam hit to PF00118, DE TCP-1/cpn60 chaperonin FT family, score 4.3e-196" FT misc_feature complement(1039786..1039821) FT /note="PS00296 Chaperonins cpn60 signature." FT CDS complement(1041066..1041353) FT /transl_table=11 FT /gene="cpn10" FT /gene_synonym="groES" FT /locus_tag="BB0963" FT /product="10 kDa chaperonin" FT /note="ortholog of Bordetella pertussis (BX470248) BP3496" FT /protein_id="CAE31462.1" FT /translation="MALRPLHDRVIVKRLDNERKTASGIVIPDSAAEKPDQGEVVAVGP FT GKKTEDGKILPVDLKAGDKVLFGKYAGQTVKVDGEELLVIREDEILAVIQ" FT misc_feature complement(1041072..1041353) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00166, DE Chaperonin 10 Kd subunit, FT score 2.5e-59" FT misc_feature complement(1041273..1041347) FT /note="PS00681 Chaperonins cpn10 signature." FT CDS complement(1041745..1042374) FT /transl_table=11 FT /locus_tag="BB0964" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3497" FT /protein_id="CAE31463.1" FT /translation="MTHSKALLLVSMEPPAGMEAEFNDWYDTEHLPERAGLPGFETALR FT YVCVAGWPRYLALYDLSNIEVLDDKPYQDVSGERFSPWSKRVLNRVRGQSRMAAQQVYP FT RQAITQRAPRLLLLRFVGLTLQHEADLVSTLRSAFSNRAGVQQLRVYREPADNGPRFLA FT LVEAHESFSHQEKTSGLGPYARHLDMINEYTPYWTRGALHGVYPES" FT CDS complement(1042371..1043072) FT /transl_table=11 FT /locus_tag="BB0965" FT /product="conserved hypothetical protein" FT /EC_number="4.1.1.76" FT /note="ortholog of Bordetella pertussis (BX470248) BP3498" FT /protein_id="CAE31464.1" FT /translation="MHKSHYQRFIMPTAIRIGVLIPENNTRVAEELPLWLPGCRLEVVK FT IPRDKGLLNAAALPAYKENALALAREKLGTGDIDVVAYGCTAAGFLLGPVGDQELARQL FT RENTGKPVATIASSMTSVLTQDGIRKVAVVTPYSDAVNAQLKGFISNAGIEIAAFDSLY FT AKDVDELGRISAQAVSHIARQTMNDDCEAMFIACAQLPTFNVLHQLETEFGRPVYSSIQ FT AMATQIQAIAS" FT misc_feature complement(1042797..1042847) FT /note="PS00606 Beta-ketoacyl synthases active site." FT CDS complement(1043121..1043756) FT /transl_table=11 FT /locus_tag="BB0966" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3499" FT /protein_id="CAE31465.1" FT /translation="MTKALLLAMMTPPGDLEEEFNEWYDTEHFPRLSTVPGFDRSSRYV FT AVKGWPKYVALYDLASVDALEHPQYTRAPGARFSPWAQRILTKLHGQYRFSGDQIYPGP FT ALMGDRGRPLQVAVMRFREMPGAHEAALIEGLQAIVDSSEDLLQARVFRGSGPLQGDYI FT ALVECRAHDPRIPVTASALGPAADHLDLMTFYIPYWRRGYVPSVFEAQ" FT CDS complement(1043800..1045509) FT /transl_table=11 FT /locus_tag="BB0967" FT /product="putative dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3500" FT /protein_id="CAE31466.1" FT /translation="MSPVVSEASPERWDDETDVLVIGSGAGGLSAALFAAQAGLRVLIC FT EKLAYVGGTTATSGGGIWVPGTKAGLAAGDTLEAARTYLKALLGDFYQEEVIDTYLATG FT GKVIDFLNENTEVKFDLSSWPDYRSSLPGGATRGRSLFPQPFDGKKLGRNFSLLHPPLH FT RLMVLGGLMLGPEEVHDFLRPFSSPRALMRVLRKLLRYGMDRIRYARGTDLRSGNALAA FT RLLYSVDKLGCRILTQADLESLAIDHDRVIGATVVVGGVPKRIRASKAVLLATGGFAHN FT QEMLRRYGPATPHRFSLCNPACTGAGIQAALDAGASVDRELSSVGFWTPASASREKNGA FT DTPVIYGYLDRGRPGVIAVNEQGERFVNEANSYHDIVTAIFANGGADGKPFYFITDREF FT VRRHGLGLIRPWPWNRSLRPWIRRGYITVASTLDKLGPKIGIDPGALAAAVQRHNQSAR FT TGQDPDFHKGASAYNRMFGHNMTWPNPNLAPIETPPFVALRIHPATIGTAMGLKTSASG FT QALNAAGQPISGLYACGNDQASPFRGFYPGGGSTLGPAIVGAYLAVQSLSKQ" FT misc_feature complement(1044271..1044303) FT /note="PS00133 Zinc carboxypeptidases, zinc-binding region FT 2 signature." FT CDS complement(1045571..1046521) FT /transl_table=11 FT /locus_tag="BB0968" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3501" FT /protein_id="CAE31467.1" FT /translation="MIKLMLAGLAALMPMLSMASDYPSKPVTLIAGFAAGGPTDVMARA FT FAQQLAAELGVPIVVENRPGADSLLASQAVRNAKPDGYTIYLASSAHAINPSLFKDAKF FT KVRDDFTPISTIGEVPNVVAIPTDLPARTLKEFIDYAKARDGQLNYATTASITYLQTAL FT MLKSAGLNLQRIPYKGAAPAAVALMSGDVQFMMSGIGPMVPQIQSQKIRALAVTSAKRS FT ALLPDLPTAIEAGLPGFTSTVWYALLAPANVPPDIVKRLNESTRAALQNPDLIAKLTAQ FT GVEQRGSSPEELSQFLAAEEAKWMATVDELGARQQ" FT misc_feature complement(1045583..1046398) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.7e-84" FT misc_feature complement(1046465..1046521) FT /note="Signal peptide predicted for BB0968 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.990 between residues 19 and 20" FT CDS complement(1047127..1048140) FT /transl_table=11 FT /locus_tag="BB0969" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3503" FT /protein_id="CAE31468.1" FT /translation="MPNTIHQDEGRPIVNSNDHDSPAESRASGVLNLTHLRTLVAVVQE FT GHLTRAAERLRISQPAASHHLRSLEQQFGLPLFTRTPRGVVPTAAGLQLSEQAARLLAS FT SLELLSTASELRGSASGRIAIGTIEDPSVHAALPSLVKWFHEHYPLIELSIESRNSSSV FT RQGILTGEINAGFYVSCTNEANLREYEIGQRELVVVAPQSWRERVATATWPELAKLPWV FT MTTTGSAHSEITAQLFRSHNITIRPALEVNTERLLRAMVSQGVGLGFTRREFAEAEQAR FT GAFFIVPISVHRTTMHFAYARSAETDPLIQILSRGLATVLPVAERLIPSTAKPAEK" FT misc_feature complement(1047175..1047795) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.8e-25" FT misc_feature complement(1047865..1048044) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.5e-26" FT misc_feature complement(1047910..1048002) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1047940..1048005) FT /note="Predicted helix-turn-helix motif with score FT 1577.000, SD 4.56 at aa 46-67, sequence FT GHLTRAAERLRISQPAASHHLR" FT CDS 1048188..1049933 FT /transl_table=11 FT /locus_tag="BB0970" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3504" FT /protein_id="CAE31469.1" FT /translation="MKDVTPARADYPWDGERDVIVIGSGCAGLSAALLAAKKSLDVVLC FT EKSSQVGGTTASAGGVMWIPNSREARAAGVDDSSEQVRVYLRALMGAYYRADLVDPYLK FT SAPLAAQAIQEDTQVRLKLMPAMSDYHASLPGGKAGGRSLEPERFDGRRLGADFELVRA FT PIKRLMLLGGLYIDKRRIDEFLNPFGSFRNFIGVIRTLARYAIDRTRFSRGTDIGAGNA FT FVASALLSLRERGVPIWLNSPMVSLVRNPQGGVAGVAICRDGKLQRIRARKGVILAAGG FT FPRNAALLEELAGGFPHDQSVGYEGNVGDTLQAARQAGAAIDADLASPCWWTPTSRNKE FT ADGSMSTVLYGYLDRSRPGMIAVNAAGKRFVNDSDSYHDIVYAMFKDGVTPDSRFYLIC FT DRRFVWKRGLGNLIKPYCLSLGRYVRSGYISTGRSIRELAAAIGIDPDALEVTVTRHNG FT FCETGVDLDFGKGGNPYNRMFGDPRVKPNPNLLAIRHAPFFALRIYPGTLGTILGLKAT FT ADAQVVGQDGEAIPGLYACGNDMSSVFRGFYPGAGATLGPGLVFAYRAIEHLARSSGGS FT AAQSA" FT CDS 1050044..1051009 FT /transl_table=11 FT /locus_tag="BB0971" FT /product="putative exported protein" FT /protein_id="CAE31470.1" FT /translation="MSFFGRLGMACAMLTLAVPLAVRSAYPEKQVRIIVPFASGSLTDV FT VFRSLAMELERELGQPVIIDNKPGASGIIGTRAALSAAPDGYTLVSVGVTNGASNKSLF FT KDLPYDPSKDFTPIGKVADSPFVLVVRADSPINSLADLYKQARAEPDSVRYGYASGSAQ FT VSGAMLANAADARFALIPYKSSQQILTDIVGQVVDVTLSDFAGGMALVRGDKLKALGVT FT SRTRFPLAPELPTLIEGGAQDYEITVWFGLVGPAQLPQDVQRRLSDALVNALKRPQLIE FT RFTTQGLTATPSSSQEFKTFLDKEILVWGQMIKSAGLTPQ" FT misc_feature 1050044..1050115 FT /note="Signal peptide predicted for BB0971 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.462 between residues 24 and 25" FT misc_feature 1050179..1050997 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 6.4e-81" FT CDS complement(1051046..1051798) FT /transl_table=11 FT /locus_tag="BB0972" FT /product="probable transcriptional regulator" FT /protein_id="CAE31471.1" FT /translation="MEVKLVVRTLDVFELFSKEGKPLSLTDMARALDVPMSSTLALVRT FT LVAKGYLYETRKRGGYFPTRKMLLVCQSIDAADQVLELVRPFLEELRNISQETAVLGKR FT QDGQVIYLDVALSHQPIRYHVQVGESRAAHTNSIGKAIFPMLDEKEQKALLAKANWRAL FT TSRTIATREAFLRDMAQTKARGWSSNVGESVEDLAAVALPFQLASEWYAVSIVGPYERM FT ERNWDAHVETLLQTGARLRQAIAVHEGQ" FT misc_feature complement(1051070..1051618) FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 2.4e-19" FT CDS complement(1051913..1052296) FT /transl_table=11 FT /locus_tag="BB0973" FT /product="probable carboxymuconolactone decarboxylase" FT /EC_number="4.1.1.44" FT /protein_id="CAE31472.1" FT /translation="MAKTRLEVGRDILKQTLGDAYYAQRVDSTNSFNGSLRRLTDEYCF FT GEVWGDETLTPKQRSMLVIALLACMGRVQELKTHVGGAVNNGCNVEEIRAVMMQVAIYC FT GIPAGVEGTRTAEGVLRERKLID" FT misc_feature complement(1051943..1052233) FT /note="HMMPfam hit to PF02627, DE Carboxymuconolactone FT decarboxylase, score 2e-14" FT CDS complement(1052312..1053301) FT /transl_table=11 FT /locus_tag="BB0974" FT /product="probable 6-phosphogluconate dehydrogenase" FT /EC_number="1.1.1.31" FT /protein_id="CAE31473.1" FT /translation="MPENPFRPNSRARDLAITQHLSREGRKVDKIGFIGLGNMGAHMAR FT RLCEAGYAPAVFDVDASRRAAFEAIGASWADSPQAMADQVSTVVVSLPTPAVVEEVLTG FT AQGLIHGKAVKFIVDTSTTGPEVSKRAAERLAGRAIQLVDAPVSGGTSGAADGSLSIMV FT SGAPQAYETVSGILRVIGRNLFYLGEEPGQGQLMKVINNTICAAATLASFEGLVLGSRA FT GIDARVMLDIINVSSGRNFSTEVKIPQCVVDRNFPLRFTTTLLHKDVKLCLDEAARQGV FT PMWVSDAARQMLQFAISQGDGPVDYGNVIKRYEAWAGTQFGSEPQPQH" FT misc_feature complement(1052735..1053220) FT /note="HMMPfam hit to PF03446, DE NAD binding domain of FT 6-phosphogluconate dehydrogenase, score 0.00032" FT CDS complement(1053474..1054160) FT /transl_table=11 FT /locus_tag="BB0975" FT /product="probable hydrolase" FT /protein_id="CAE31474.1" FT /translation="MSVFAQIANFNGQVPRIDPDNAVMLLIDHQSGLFQTVHDMPMPTL FT RSNATTLARIATLAKMPVITTASVPQGPNGPLIPEIHESAPHARYVARKGEINAWDNPE FT FVAAVKATGKKQLIIAGTITSVCMAFPCIAAVAEGYQVFAVVDASGTYSKMAQEITLAR FT VVQAGVVPMDTAAVCSEIQRTWNRPDAEKWAEAYSAVFPDYQLLIESYLKAQAVVTNKE FT QLDSQR" FT misc_feature complement(1053624..1054112) FT /note="HMMPfam hit to PF00857, DE Isochorismatase family, FT score 1.3e-13" FT CDS 1054705..1056336 FT /transl_table=11 FT /locus_tag="BB0976" FT /product="lactate permease family protwin" FT /protein_id="CAE31475.1" FT /translation="MDSTPGLMHWLLAALPIVALIVLMVAMRWTAQQAGTTGIFIASAV FT AVLAFATPLDTLAVASAKGVWDALFILYVIWPALLLYHVMSHSGGYDALRRGIELMSRN FT ELFVIVALGWVFASFLQGIDGFGTPIAVVAPLLVAFGMRPVYAVAIPIIAHIWAKFYGT FT LGVGWLATLQVVDIDAATTASTALQAALLISIQAVLGGFTIVWLYGRWAAIRSGWPLVL FT VIAAIQGLGQVAAVYVDPVLAAFLPATAALVALIPLSRWSRYREPDASIVERPAMLDHA FT SRKRVDAEPPMGLWTALAPYGLLTVLALCVSMIDPLHSRLDAVAWGLAFPEVATGLGMT FT TAAAAQYSALRPFSHPGAYILLTALLTFVVFHRRGYFRKWAEQHGEPPARIVPELLQGA FT VPASIPIIAFLVMASIMKHSGQNLTLAMGIAAVAPAYVFAFLSNAIGILGAFMTSSSTS FT SQVIFSDVQMRLAQAKGLPVSTILAAQSAGGAIGNAIAPANVVMGASTAGIAGQEGEIL FT RKTLPWTVLAFVLTGVATVLLALFMQ" FT misc_feature 1054705..1054857 FT /note="Signal peptide predicted for BB0976 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.942) with cleavage site FT probability 0.346 between residues 51 and 52" FT misc_feature join(1054720..1054779,1054816..1054884,1054894..1054962, FT 1055020..1055073,1055086..1055154,1055167..1055235, FT 1055263..1055331,1055350..1055418,1055578..1055646, FT 1055671..1055739,1055767..1055820,1055878..1055946, FT 1055989..1056057,1056166..1056234,1056262..1056330) FT /note="15 probable transmembrane helices predicted for FT BB0976 by TMHMM2.0 at aa 6-25, 38-60, 64-86, 106-123, FT 128-150, 155-177, 187-209, 216-238, 292-314, 323-345, FT 355-372, 392-414, 429-451, 488-510 and 520-542" FT misc_feature 1054726..1056318 FT /note="HMMPfam hit to PF02652, DE L-lactate permease, score FT 2.6e-23" FT CDS 1056333..1056545 FT /transl_table=11 FT /locus_tag="BB0977" FT /product="putative membrane protein" FT /protein_id="CAE31476.1" FT /translation="MTEPTMIKRFLQNRMSYLGLSFVLFIAALPLISIGAAGPSRGLFW FT LGFVSMGVAAAIPPVQRLLYPPKAS" FT misc_feature 1056333..1056497 FT /note="Signal peptide predicted for BB0977 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.478 between residues 55 and 56" FT misc_feature join(1056381..1056449,1056459..1056527) FT /note="2 probable transmembrane helices predicted for FT BB0977 by TMHMM2.0 at aa 17-39 and 43-65" FT CDS 1056589..1058250 FT /transl_table=11 FT /gene="ggt" FT /locus_tag="BB0978" FT /product="gamma-glutamyltranspeptidase precursor" FT /EC_number="2.3.2.2" FT /protein_id="CAE31477.1" FT /translation="MIHANGPRTGRPPALGRRGMVSSPHYLASGSGLEVLRRGGSAVDA FT AIATNATLCVVYPHMAGLGGDAFWLIAAGAAQGVQALQACGPAGALADMDFYRGKGHAE FT AIPARGALAALTVPGAVDGWRLAHERYGKLPWESLFADAIEYARHGAPVSRSLADWLAA FT DAAILAADPGMAGIYLPEGKPQREGSYLVQADLARTLETLARLGPREGFYEGEVAREIC FT RYLEAAGGPLRAADFERYRAEWVQPISGTYRGYEVFQMPPPTQGFAALQILKLLEQCDV FT AAWGAESAEYYHHVVEAIKIAFADRDEWLSDPAYVDMPLATLLSSEYCRQRHALIRSES FT ALALDRIEAGIKFGGAASRKSPDGDTVYFCVADADGLVVSTIQSIYHDFGAAVVGGNTG FT VIMQNRGSFFSLDADHPNCLQPGKHTFHTLVPAMLMKDGQPVLAYGTMGGEGQPQTQAA FT LLTRMVDFGYDVQQAIEAPRWLMGRTWGMSSRDLWLEARIADETLRELRLRGHPVKTVP FT NWDGTLGHAQAIRIDPVTRAFEGGADPRGDGAALGF" FT misc_feature 1056685..1058235 FT /note="HMMPfam hit to PF01019, DE FT Gamma-glutamyltranspeptidase, score 8.6e-163" FT CDS 1058269..1058730 FT /transl_table=11 FT /locus_tag="BB0979" FT /product="putative universal stress protein" FT /protein_id="CAE31478.1" FT /translation="MFKKILIPTDGSSPATQAAHAGIDFAKSIGAEVVVVSVAQPFAAA FT FAYDGLGSGYAFSEEDIDKSMLEQAEAYVQPIAERAREAGLRVDGRAVSHINVAQGIVQ FT AATDSGCDLIFIGSHGRSGLSRLLLGSVTAKVLPLASMAVLVHRAKEEQ" FT misc_feature 1058269..1058331 FT /note="Signal peptide predicted for BB0979 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.614) with cleavage site FT probability 0.554 between residues 21 and 22" FT misc_feature 1058269..1058712 FT /note="HMMPfam hit to PF00582, DE Universal stress protein FT family, score 5.4e-11" FT CDS complement(1058748..1059221) FT /transl_table=11 FT /locus_tag="BB0980" FT /product="putative GnaT-family acetyltransferase" FT /protein_id="CAE31479.1" FT /translation="MAIRTARQDDLEWIVAAHAQVYAAEFGFDRRFRDGIAAKMAALRR FT RPGALDRIWVGWVEDERAASIAVSDRPGGIAFLNFVLVLPRYRGRGAGRAMMETALAHA FT RAHGSREVQLETYSCLVDARALYHRLGFRATMVAPGQHAYGQTFDQEFWALAL" FT misc_feature complement(1058823..1059062) FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 1.1e-18" FT CDS complement(1059332..1061179) FT /transl_table=11 FT /locus_tag="BB0981" FT /product="probable acyl-CoA dehydrogenase" FT /protein_id="CAE31480.1" FT /translation="MAYQPDYGSFARKRPARSTQSSEKLAPDCAGLDFFAIDPSLQQLL FT SVYVPGAELEYFRPHFERMGKLAGGRLNELAMVADKHGPVLHARSRWGEDEDWIEYHPA FT YQEMEHIAFEQFQFHAMTHRPGAMGYAGTLSPVTKYVFQYLFVQSEFGQMCPISVTDTS FT IHLIRKFGSEALQARLLPRMLADNLQDLWKGTQFMTEKSGGSDVGQVETTARQIDGQWH FT LHGEKWFSSHVDADIALILARPEGAPAGTRGLALFAMPRYREDGSRNSYRIVRLKDKLG FT TRSMASGELRIDGAFAYLVGDPTQGIKQMMEQVNLSRLSHAVRAAAMMRRCLNESMQAA FT RHRQAFGRQVVDYPLMQRQLLKLLVPTEAALTMTMATADAMAKAYGGDAQCKAALRLLT FT PLLKLRACRDNVTVATGAMEVRGGNGYIEDFVNARLVRDAHIGVLWEGTSNINALDAIE FT RAVRKDQAHIALRALLLEKLRAVRAQAPVIAGPLAEAVAAACQLAEGVAGDPRHESEVR FT RAASALYHASAAVLMAWEATQEGVDGRRLLLADAMLRTRLLPRDPLAAPSAAMLARDLA FT MLQGEKLSLRQAADLLAPHDAGVAPARQARADAAAPAQA" FT misc_feature complement(1059797..1060270) FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 3.5e-34" FT misc_feature complement(1059866..1059925) FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT misc_feature complement(1060280..1060588) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 9.1e-07" FT CDS complement(1061213..1062439) FT /transl_table=11 FT /locus_tag="BB0982" FT /product="conserved hypothetical protein" FT /protein_id="CAE31481.1" FT /translation="MPNKPLQKYRVLDLTRVLAGPWCTQNLADLGAEVIKVERPGVGDE FT TRGWGPPWIPAGAASKRRDSAYFGSANRGKKSITIDFTTAQGQALVRQLAADCDVLVEN FT YKTGTLARYGLGYEDLKAVNPGLVYCSVTGFGHTGPYRHKPGYDFVFQAMSGLMSITGE FT RDDLPGGGPQKVGIAVADITTGMYSTVAVLAALLERESHGRGQHLDMALLDCAMAFNSN FT QAVNYMASGSMPRRYGNAHSNAVPYQVFDTRDGQIVVAVGNDALFAAYCRAAQRPDLCA FT DARFVTVSGRLQNRDELLSQLAVVMAGKTSAQWLAVLDAAGVPCAPINDFEQALADPQV FT KARNIETHIALEDGAVFRTIASPLRFSETPLDHLAGPPTLGQHTADVLRERLGLDEAQQ FT AGLRQAGVI" FT misc_feature complement(1061510..1061533) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1061627..1062208) FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 5e-76" FT CDS complement(1062488..1063477) FT /transl_table=11 FT /locus_tag="BB0983" FT /product="putative exported protein" FT /protein_id="CAE31482.1" FT /translation="MGLDTTKLAAVLATSLSLCAASAAASPASADYPRQTVRLIVPYAA FT GGMTDLVARIVGQKLGEGLGQAVVVENKPGASTITGADFVAGARPDGYTLLVATNTTLT FT INPWLYKNLRYDAQKSFTPIALVAKAPSVIVVNPKVPANNIGELVELASARPGSLSYAS FT YGNGSSAHLAGEMLRSRAGIAVLHVPYRGSAPAKTATMSGEVSMTFEPAFTAAPLIKSG FT QLKPIALMGDKRSPALPDVPTVAEVGYPGMDMQAWVGFVAPANVPDGIVARLAAEIRKV FT MADPEVQAKLIGSGAEPVGYYQQDFTAYMRDESARYKTVIEQAGIRAE" FT misc_feature complement(1062500..1063324) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.4e-106" FT misc_feature complement(1063403..1063477) FT /note="Signal peptide predicted for BB0983 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.674 between residues 25 and 26" FT CDS 1063618..1064511 FT /transl_table=11 FT /locus_tag="BB0984" FT /product="probable LysR-family transcriptional regulator" FT /protein_id="CAE31483.1" FT /translation="MELRQLRYFVAVAEALHFGRAARRLSISQPPLSFNIARLEESLGY FT ALLRRSTRAVELTAAGKVFYQEACRILALADQARALGQRAARGEVGSLRVGFVGASLLS FT PMARVLRQFEQDRPGLMLSVHELNSFEQIHALQREQIDFGIMHPRSIPDGILARLLHRE FT PFVCALPDSHPLAARQRIRLQALKDESFVLFPRHFSPEYHDQIIALCMDAGFTPHIRYE FT VRANATVVALVAAGFGVAIVPRSVSRVAIDGIRFRPLAKAGVESQLLGVWRDDGHDSLI FT QPLLAAMASLLPAARR" FT misc_feature 1063624..1063803 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3e-25" FT misc_feature 1063663..1063728 FT /note="Predicted helix-turn-helix motif with score FT 1071.000, SD 2.83 at aa 16-37, sequence FT LHFGRAARRLSISQPPLSFNIA" FT misc_feature 1063666..1063758 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1063873..1064496 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 3e-44" FT CDS 1064650..1065339 FT /transl_table=11 FT /locus_tag="BB0985" FT /product="hypothetical protein" FT /protein_id="CAE31484.1" FT /translation="MAAPFTKWFCIMQDVDVSPDLDRGLGIFRRVSFYELMEIMTFSRL FT PFAPAARRRGAGVVDLSWRFLDGAGRVRAAPRKRGEPWICLVSTVDSLAASLFTQADMA FT VRMEAAGRAASASGDAAAAFQAGPGALAVVLSAAGEGGEAQRRGHGVNLLVDLGTLLSG FT VLVSPAAPASFVGLVGEIVQRNTGAWVSRGPLRKADAGAREPALMPARPPARGRRPAVG FT RTPTAGP" FT CDS complement(1065323..1066306) FT /transl_table=11 FT /locus_tag="BB0986" FT /product="putative exported protein" FT /protein_id="CAE31485.1" FT /translation="MFKLNLSRCAPMALAIVLAGGAMTARAQDHAPVRIVIGFSAGGAL FT DNMSRAIAEQLKAELGQSVIVENKPGAGTQIALQAVKRSPPDGNTILISPAPPFVLFPL FT TYDRLQYDADKDLVPVAHLADTPLVASTSSNSPYSTMHEYLAWVRKNPDSVGVGMVSLG FT GALHFGLLKLNQHSGLNLMPIAYKGAPAMLTDEIGGVLPIGMDTVAATSELARAGKIKY FT LGVTGTERSALLPDVPTLGESGAPGFEQSSGWYAAFVSAGTPKAVTDKLERALIKIVKD FT PAFSARVAQVGLVSTGKPGAELAAMIQAQRQAWQPVVKASGFKALQ" FT misc_feature complement(1065338..1066165) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.1e-64" FT misc_feature complement(1066226..1066306) FT /note="Signal peptide predicted for BB0986 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.733 between residues 27 and 28" FT CDS complement(1066387..1067127) FT /transl_table=11 FT /locus_tag="BB0987" FT /product="putative membrane protein" FT /protein_id="CAE31486.1" FT /translation="MIDLLFPACAVLLGYVVLGITGFGSALVVVPLLAWRWPLPEVVAL FT TLLLDVMASLLLGGLNLRQVDFAELRRLLPGMVAGALAGLWLSRSLDASWPLLVLGLYV FT AAVGAQALRPRPARPRPPAAAPWALAAGGAIGVVEMLFGTAGPLVVAWLSRRLPDVHAL FT RASTPVVITVSACSVLLAMGWAGRLSQPELWTRWLALVGVAAGGVLLGHRWARHVSPAA FT LRKLICGLLVVSGLTLVVHTLQQG" FT misc_feature complement(join(1066399..1066452,1066489..1066548, FT 1066576..1066644,1066681..1066749,1066792..1066851, FT 1066942..1067010,1067023..1067091)) FT /note="7 probable transmembrane helices predicted for FT BB0987 by TMHMM2.0 at aa 13-35, 40-62, 93-112, 127-149, FT 162-184, 194-213 and 226-243" FT CDS complement(1067143..1068672) FT /transl_table=11 FT /locus_tag="BB0988" FT /product="conserved hypothetical protein" FT /protein_id="CAE31487.1" FT /translation="MKFVIALIRHETNTFSPVGTELSDFRRGTSGDGPAHGEAARLACE FT GTNNAAAAYLDLAREMGAEVDFSVYASAVPSGLVSRAAFEALCDAVLDSARQGCDAILL FT DLHGAMVVDGYPDAEGELLRRLRACTPAGLPIGVALDFHANFSSELIRNATAIAGYCTY FT PHVDVYETGARVGRTIRALLEGRSQPVVLWQRLPMLTHMLRQTPALQPMKDIMERAMQA FT ERDGEVCNASVFGGFPLADIACAGLSVVIVAERARLEAAQRLLDELCGLAWSRRADFVF FT PSEPVADSISHARTLEQGPVILVDHGDNCGAGGTTDVMDVLEEVLRQGLQDVVAGPFCD FT PAAVAALFEQGVDAEVTLDVGGKTDMPALGLAGRPLRLTGVVERLTDGEYTVTGPMFTG FT VRLSLGRTAVLRVGTVRVFISERPQEPYDTGVFTHAGVDPAQSRYVLLKSRQHFRAGFE FT PFARHIVLVGGPGVCSSDYGIFPFRHLSRPIYPLDADATLEHAQSWIAGDA" FT CDS complement(1068685..1069683) FT /transl_table=11 FT /locus_tag="BB0989" FT /product="putative exported protein" FT /protein_id="CAE31488.1" FT /translation="MEMRRIRRRVVGLAIASCLAPLLGPSPALAQAEWPARTMKVVVPY FT PAGGTADAMGRMVAGKLAKAFPQASVIVENISGGATVPGAMAVLREPADGHTLFMASDN FT TLNINHWLLKDARYDGDRDFTPVTVLNTYPHWLIVNPQGPYDSFDALVQAIRANPGKIS FT ISVNTIGGAAYLALDNWRRRNGLEFEIVPYRGSPPAVADLIGGHTDAHVDVVGSSIAHA FT RGARVLPVAILQDTPLAEFPKAVAQDSKAPKALAVQSNLSVVVRAGTPPALLERLYAAL FT QTGVKDKDFAGTLDMLSLDAVMLPPAEARTFLARETRRYGALVEQSGLEKQ" FT misc_feature complement(1068697..1069524) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 8.4e-34" FT misc_feature complement(1069594..1069683) FT /note="Signal peptide predicted for BB0989 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.969 between residues 30 and 31" FT CDS 1069793..1070710 FT /transl_table=11 FT /locus_tag="BB0990" FT /product="probable LysR-family transcriptional regulator" FT /protein_id="CAE31489.1" FT /translation="MDEHRLKCFVAVYEEGSVSAAAVRLHMTQPPLSILLRKLEDELRV FT GLFDRSGRRLAPTAAGELFYLRAKAMLANLQTIRRELREVEQGARGLVHIGCSTAASLF FT IVPRVMEDLAAEGLEIVLHVHEGEIGYMLQQLRERSLDLTICRSQHMAPDLESQVIMEE FT PLFVALPPGHPLAGRERVRLVDLRDERFLLHRSPLGTGISDMVLRACRNAGFAPNVVYW FT GGETLPMLLMARRGQGIAFAPQSFAQLGLQGLAALVPVADAEFRTHLNMIWPRQQALSP FT IASRVRELIMRRFGPGGGDKRAAS" FT misc_feature 1069799..1069978 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 9.6e-24" FT misc_feature 1069838..1069903 FT /note="Predicted helix-turn-helix motif with score FT 1160.000, SD 3.14 at aa 16-37, sequence FT GSVSAAAVRLHMTQPPLSILLR" FT misc_feature 1069841..1069933 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1070048..1070677 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2e-41" FT misc_feature 1070054..1070104 FT /note="PS00606 Beta-ketoacyl synthases active site." FT CDS complement(1070707..1071870) FT /transl_table=11 FT /locus_tag="BB0991" FT /product="putative membrane protein" FT /protein_id="CAE31490.1" FT /translation="MNVDLTTLYLLATGTLIASAGMMLWEYRANPGRGRALGLFAAGFA FT TLALGCVAALYRRDLPGVWGSALANLIMIGAYLLVLQGVGALRGSRHGAFGAAVLAVMA FT AAWALSDPAEMDATWSHVSAAPIALINAMTALSMWRNPAMRPFPARRMVIAMTGLHALI FT YAGRALVLPWLVREHGLPVQALAGKFTIYEGVLYSVILPMALLRLLREEIHGELLRESQ FT TDYLTRLGNRRWFFEEGARLLKHRPAGSSPLAVLAFDLDQFKAINDMYGHQTGDEVLQA FT FARAAQDVIGPRAVLARIGGEEFAALLRGDDALKAQALGEAVAGRFTQAVAGRLAHISL FT PVTVSIGLARIEPGDATLAASLMAADRAMYRAKSLGGNRLEIAAGAA" FT misc_feature complement(1070734..1071222) FT /note="HMMPfam hit to PF00990, DE GGDEF domain, score FT 3.9e-42" FT misc_feature complement(join(1071244..1071303,1071346..1071414, FT 1071448..1071516,1071544..1071597,1071616..1071675, FT 1071703..1071771,1071790..1071858)) FT /note="7 probable transmembrane helices predicted for FT BB0991 by TMHMM2.0 at aa 5-27, 34-56, 66-85, 92-109, FT 119-141, 153-175 and 190-209" FT misc_feature complement(1071811..1071870) FT /note="Signal peptide predicted for BB0991 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.615) with cleavage site FT probability 0.524 between residues 20 and 21" FT CDS complement(1072011..1073453) FT /transl_table=11 FT /locus_tag="BB0992" FT /product="probable pyridine nucleotide-disulphide FT oxidoreductase" FT /protein_id="CAE31491.1" FT /translation="MTRRCELLVVGAGPAGMAAATQSAALGVDTLLLDEQATPGGQIYR FT AITTTALTRPDILGPDYWHGASLLEPLRASGAAYLSGATVWAVSRSAEAGDGGVFEVAY FT SVGGQADILRARHILLATGALERPFPIPGWTLPGVVTAGAAQILLKTAAIVPGEHAVLA FT GGGPLLYLLAWQYLNAGVRIERLLETTAPGGLARALPHALDFLRSPYLAKGLKLMRAVR FT AHVPITRGVQDLRAQGRERLESLSYRAGGRTHDMPARHLMLHQGVVPNLNLSRALGVDH FT QWNPTQACWQPRVDDWGATSVAGIGIAGDGAGIGGAVAAEHRGRLAALQAAVALGRIDD FT ARRDREARAPRRALARAMRGRAFFDVLYRPADAYRRPGDDTIVCRCEEITAGQIRATVR FT LGCSGPNQMKAFLRCGMGPCQGRLCGLTVSELIADERGVPLPEVGYYRLRFPTKPVTLG FT ELASLPQTEASRQAVVRLKKTA" FT misc_feature complement(1072491..1073438) FT /note="HMMPfam hit to PF00070, DE Pyridine FT nucleotide-disulphide oxidoreductase, score 4e-06" FT misc_feature complement(1073379..1073453) FT /note="Signal peptide predicted for BB0992 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.332 between residues 25 and 26" FT CDS complement(1073450..1073758) FT /transl_table=11 FT /locus_tag="BB0993" FT /product="conserved hypothetical protein" FT /protein_id="CAE31492.1" FT /translation="MFKRLEAAPGLPARPVVHIDVNGEAVSCRAGESVAAALLAAGHDA FT CRATVVGGVPRGPYCMMGVCYDCLVTIDGQPNRQACMTPVRDGMRVERQQRAREVLP" FT misc_feature complement(1073498..1073704) FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 1.2" FT CDS complement(1073742..1074896) FT /transl_table=11 FT /locus_tag="BB0994" FT /product="probable FAD dependent oxidoreductase" FT /protein_id="CAE31493.1" FT /translation="MAISAAADAAPRFSGHDVIVVGGGLVGSALAYGLRRRLDRVAVLD FT EGDLAYRASRGNFGLIWVQSKGMGMPRYGVWTMASQRAWPDLAARLLEESGIDVHLEQQ FT GGLHVLLSDEEVQARIDFMTRLLAQPGMSDYAWKLLDRHELADLVPGIGPEVRGASWTP FT VDGIANPLKLLRALHTTFERNGVDYLPRCPAQAISRHADGMFVVDTPRGRLQAPRLVLA FT CGLGNQAMGAQVGLDIPVRPQRGQIIVLERTHRVLRTPISTLRQMDEGSWLIGDSQEEA FT GYADNEVSLPILGTLADRAVRTLPALREVNVVRSWSALRVMSPDGFPIYAQSATCPGAF FT VATCHSGVTLAGAHALLLAPMIADGALAGDMAPFSARRFHVQEA" FT misc_feature complement(1073796..1074851) FT /note="HMMPfam hit to PF01266, DE FAD dependent FT oxidoreductase, score 0.0047" FT CDS complement(1074924..1075973) FT /transl_table=11 FT /locus_tag="BB0995" FT /product="putative dipeptidase" FT /protein_id="CAE31494.1" FT /translation="MSKAFGLELSEAEQERVARIRQEFVYWNLCDSTTRECGDETYLEQ FT VKASNVTAINHTVCYTVDFAEGVKNVAHWTRLYDARPDVGFIAKTYADIERARKERRTA FT IFMGFQDVTALEGDMDRMEVFYNLGIRFVQPTYQDRNLFGDGCGERFQSGLSKLGIKFI FT EKLDELGIVIDTSHVGIGTTIDCANMSQRPIMATHTAARAIVDTPRNKTDDEIKAIAAK FT GGVIGIAGKSGFLKKDGLETGSTINDMIDHVVYIAGLVGIDHVGIGTDVGDLRKYSPDR FT MAEFHARHPEVAIIGPGLRTDLMHPKDVGPGTLHYVIAYLVKRDFKDDEIRKVLGENAN FT RVVKAVFRD" FT misc_feature complement(1074930..1075973) FT /note="HMMPfam hit to PF01244, DE Renal dipeptidase, score FT 0.0014" FT CDS complement(1076032..1077150) FT /transl_table=11 FT /locus_tag="BB0996" FT /product="probable ABC transporter ATP-binding protein" FT /protein_id="CAE31495.1" FT /translation="MKARQDCSIELRDLTLAYGERDIIRGLNLDVRRGEILSLLGPSGC FT GKTTTLHAIAGLIVPRKGSVVIDGVDQTDVPINRRNVGMVFQGYALFPHMTVFDNVSYG FT LRIKSVAKAEIRERTMRALALVGMEQYAQRKPRQLSGGQQQRVAIARTMVMEPRVLLLD FT EPLSNLDAKLRHEIRGDLKRILRELSITSVFVTHDQEEAMFLSDRIVLMKDGAIAQLSS FT PREIYNNPANSFAAAFLGNTNFIAATLLSQTPDHTGCEVSATETGQVLKGRSALRFDAQ FT QPVFLSVKHDRVSYTLSHEEFLALRERPGISTMQCRVADVHFLGHVTKVECQAGGQTMT FT VLRSSACVPPDLAAGAAIYLYWPEEESLVLSL" FT misc_feature complement(1076506..1077051) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 4.2e-64" FT misc_feature complement(1076692..1076736) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1077007..1077030) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1077147..1077920) FT /transl_table=11 FT /locus_tag="BB0997" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /protein_id="CAE31496.1" FT /translation="MKKALSALYIVFMCSPLLIVIGAAFEPQEILRFPPHGVSLTWFGR FT VLQDPAFLDAATNSLIVGVLATVLSVALGLLAAYALARGSGRYRETILGLLLSPLVIPE FT LVIGLALLQMLTLMNLATDLLTLVLAHTVICLPYTVRLLYNGVSAINESLENASLLLGA FT SRGGTIVRVTLPLMKNSIVAAALFAFLTSFDNTVISLFLVDASTMTLPITIYNYVEFSL FT DPAIAALSTILILLSCVVVSIISRVSGLDNMGPRK" FT misc_feature complement(join(1077180..1077248,1077312..1077380, FT 1077489..1077542,1077570..1077638,1077675..1077743, FT 1077840..1077908)) FT /note="6 probable transmembrane helices predicted for FT BB0997 by TMHMM2.0 at aa 5-27, 60-82, 95-117, 127-144, FT 181-203 and 225-247" FT misc_feature complement(1077264..1077485) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 6e-11" FT misc_feature complement(1077849..1077920) FT /note="Signal peptide predicted for BB0997 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.878) with cleavage site FT probability 0.324 between residues 24 and 25" FT CDS complement(1077917..1078783) FT /transl_table=11 FT /locus_tag="BB0998" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /protein_id="CAE31497.1" FT /translation="MKQRVLFLSPALLFITLLLFVPFLYLLYLSFMDQDYLYGGPALPG FT FGNYVEAFSNPIYWESILNTFRIGATVTVATLVIGFPIAYIISVSGKALATTLTVVTVL FT PLFVSVVVRGFGWIIVFGREGPLNALLLWTGLVSQPIQVLYTESAVIIALTHLLLPFMI FT LPVLASLRAIDKSIIDAAMVLGSRRRDVFLHVIIPLCAPGFVVGSLLVFLHVLATFVLP FT AMLGSINIKMIATLIYQQVMIVGNVPAGAALAVILFVFTMLIFGLIGALRNRLNFDSSP FT VEAGQAR" FT misc_feature complement(join(1077971..1078039,1078073..1078132, FT 1078145..1078213,1078274..1078342,1078418..1078486, FT 1078523..1078591,1078697..1078765)) FT /note="7 probable transmembrane helices predicted for FT BB0998 by TMHMM2.0 at aa 7-29, 65-87, 100-122, 148-170, FT 191-213, 218-237 and 249-271" FT misc_feature complement(1078058..1078279) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 3.1e-08" FT CDS complement(1078878..1079939) FT /transl_table=11 FT /locus_tag="BB0999" FT /product="putative extracellular solute-binding protein" FT /protein_id="CAE31498.1" FT /translation="MDTATRRTFLKRSAGIGLAAIGGSYLRIGHTADDHIYVTSSGGSF FT LENVRKHMAEPFEKQSGVKVTLVPGTNPAHALKILSSRGTPPYDVAAFGGNDMYRLIRA FT KKLAQVDEKSVPSLADVPEKFKADWEGCGSLYDYSSVGIAYRPDKIQGGVKSWKEFVER FT TVAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGSGYGDIEASIATLERMKPHIFKFFTA FT FNDPVVLLTSGEGAIGPGWDGRTFIAEDSTKGMVKWVDPTEGAVSSGPVMAVVKGGKED FT LAKAFMNYALGEEAQKAFCEAMYYGAVNRKVQYSEKLKHRLPSIDSVQLVDTELLIKNM FT SALLDLWNKRIAS" FT misc_feature complement(1078905..1079816) FT /note="HMMPfam hit to PF01547, DE Bacterial extracellular FT solute-binding protein, score 3.5e-08" FT CDS complement(1080178..1081098) FT /transl_table=11 FT /locus_tag="BB1000" FT /product="probable LysR-family transcriptional regulator" FT /protein_id="CAE31499.1" FT /translation="MNVRALEAFRAVMRTGSMTGAARIIHTTQPNISRLVSMLEAELDL FT KLFIREGNKLHVTDEGAAFFKEVEQHYAGLRALKDAARTIKQLGGGRLHIAVAPALSHG FT FLASAVTAFTQRHPRVTLSIRTCNSYMVEQLVNSQLCDLGLAAFIGHVTEPGLEAERIA FT SIRGVCLLPQAHRLASRDVIHARDLEGEPFVSIARQNGSREHVDSLFEKAKVTRKIEVE FT AENASTICHLVAQGLGVSVLNAVIAEDFRCHGLVVREFRPAIHFPITLLRSSHRPRSLL FT VAAFIDCLGAVLNERFTPSQLAVCD" FT misc_feature complement(1080217..1080843) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 7.9e-48" FT misc_feature complement(1080913..1081092) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.2e-20" FT misc_feature complement(1080958..1081050) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1080988..1081053) FT /note="Predicted helix-turn-helix motif with score FT 1339.000, SD 3.75 at aa 16-37, sequence FT GSMTGAARIIHTTQPNISRLVS" FT CDS complement(1081317..1082090) FT /transl_table=11 FT /locus_tag="BB1001" FT /product="putative enoyl-CoA hydratase" FT /protein_id="CAE31500.1" FT /translation="MNQAVSIRRDGATAIVTLDRKQNRNALSQAVMAELTEVAEGLRGE FT RDISTVILAGTQEIFSAGVDLKDPARWEIDAGDIEGIRMASERGARMCRAWESIPQLTI FT AAVEGLNVGGGIALTLCCDWRIHSETARLRLPEAQIGIPLSWQTVPRLVNLVGPAKAKQ FT LILRGKELDSQAALELGLVDLVVPPGTALDAALEVARDVNRNPRLVITMTKQSINSYAN FT ALAHLSTHMDVDQAVLCGMSAAAVQARRQFSAPAA" FT misc_feature complement(1081530..1082051) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 8.5e-27" FT CDS complement(1082135..1083754) FT /transl_table=11 FT /locus_tag="BB1002" FT /product="putative long-chain-fatty-acid-CoA ligase" FT /protein_id="CAE31501.1" FT /translation="MDIRDIKPAGPTWLDVVGQHAAATPERTALGLDGHTLSYSRLLAV FT VDEAAALLARLGVRRGDRVALLSPPRPEAIITFLACTRLGAVWLALNPKYKAPEIHYIL FT DHARPTLLMSVREFDNTEYVQTVEQVVAGIGRDSGHAIATVFFGREQPTHDDLFAALRG FT AAQERGGDAALPGPAAAQPGQACMLVYTSGSTGRPKGVLLAEFASLFRATVQKDYFATS FT RPPCILNFSPINHVGGMQFRSLVQLAAGGTIHFQERFQPGETLALIRRHRINMLMLGPT FT MLNMLMAHPDFDVDIFRQLEWYISAGAALPVPALKLLAANCPRVGSVYGSTESCSTVTY FT ASLDDSFDAVAYSIGRPIPGDEMRVADAQGEPAGPGIEGELQIRRRYCMVGYLNDPAAT FT RAAFTEDGWYRTGDLATLLPDGSFKLAGRIKEMFKSGGYNVYPREVELALESHPEVKMA FT AVVAVDDPMFQQVGHAYVLVEPRTALTAGQLTAWSKERLANYKVPKRIELRTALPMLAI FT GKVDKVALQAAAARDAAVAAAG" FT misc_feature complement(1082375..1083643) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 1.7e-111" FT misc_feature complement(1083158..1083193) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(1083756..1084724) FT /transl_table=11 FT /locus_tag="BB1003" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 4.3e-30, 36.72% id in 324 aa, and to Rhizobium meliloti FT hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 7.4e-30, 34.4% FT id in 311 aa" FT /protein_id="CAE31502.1" FT /translation="MKKILGAIALTAVAVAAGAANAAEGFPNQPIKIVVPYQAGGGTDQ FT VLRIVAPQVSALLGQPIIILNRPGASTVIGMKEVIAAKPDGYTLALSTNTSYSLIPYTQ FT SPQPYDPEKTLEYITALGETPLILTTHPGFSRNFPEFIAKVKQSPGAYSYATYGVGGIT FT HLAAEVLMGDMGIKLNQVPYKGFEAVTAVAGGQVDAMVDGVNSPTPMIQAGKIIPLVTL FT QHTRTKFLPDTPTLTEIGYPNASTSTISYILAAPKGTPQPVIDKLYQAFSQVMGEQAII FT EKIEQTKSMPMHMTPAQTKAYIDAEAERFRRIIVERKITFN" FT misc_feature complement(1083768..1084589) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.6e-60" FT misc_feature complement(1084659..1084724) FT /note="Signal peptide predicted for BB1003 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.987 between residues 22 and 23" FT CDS 1084893..1085804 FT /transl_table=11 FT /locus_tag="BB1004" FT /product="LysR-family transcriptioanl regulator" FT /note="Similar to Salmonella typhimurium OsmT protein FT SWALL:Q93IN5 (EMBL:AJ313506) (308 aa) fasta scores: E(): FT 1.1e-19, 29.86% id in 298 aa, and to Salmonella typhi FT putative LysR-family transcriptioanl regulator sty3944 FT SWALL:Q8Z2N3 (EMBL:AL627280) (302 aa) fasta scores: E(): FT 4e-20, 28.96% id in 290 aa" FT /protein_id="CAE31503.1" FT /translation="MKIIKLNVTLRQLRAFSLVNHLGSFGKAAEALSMTQGALSHLVQE FT LERQIGFKLFDRTTRRLALTPEGRTYLTHAEQVLIEVHRLHDAADDLVQRKNKQFRLGA FT TGALIASRMPAWLLEFSRLHPDVRIDLKDVNPDVLPVQMAEGTVDLGIGPIRHRMPPAV FT ACQYLFSSPIMLVVAQHHPFARRRAVTWEDVSRQTLVLSHRSSLEQLHADTGRDFSRMP FT VIELSQLHSILSVVESGDGVTIFAEYALKYLRIHKVVAIPVVEPEVMIRVGLYTNRGVT FT LSEAARSFHDFIATNHRLYGQE" FT misc_feature 1084920..1085099 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 7.1e-23" FT misc_feature 1084959..1085024 FT /note="Predicted helix-turn-helix motif with score FT 1598.000, SD 4.63 at aa 23-44, sequence FT GSFGKAAEALSMTQGALSHLVQ" FT misc_feature 1084962..1085054 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1085169..1085786 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1e-36" FT CDS complement(1085821..1087470) FT /transl_table=11 FT /locus_tag="BB1005" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="Similar to Pseudomonas aeruginosa probable FT ATP-binding component of ABC transporter pa2061 FT SWALL:Q9I254 (EMBL:AE004632) (536 aa) fasta scores: E(): FT 4.5e-71, 46.08% id in 523 aa, and to Agrobacterium FT tumefaciens ABC transporter, nucleotide binding/ATPase FT protein atu5068 or agr_pat_93 SWALL:Q8UKN2 (EMBL:AE008931) FT (539 aa) fasta scores: E(): 9.8e-69, 41.87% id in 554 aa" FT /protein_id="CAE31504.1" FT /translation="MPAPLLSIRNLCASHGPARVLHDINLDLQAGQSLGLIGESGSGKS FT LTALACLGLTPDGIDPVGSIRYQDIELMQLDEEGWRAVRGRKIGIVFQDPMASLNPIMT FT LGAQILENLKPMPGDSRAYRSARAIKLLDEVGLPDPAAMLGRHPFELSGGQQQRAMIAM FT TLAAEPALLIADEPTTALDVTTQAQILGLLRGIQRQRRMAMLFISHDLDAVRTMSDRVA FT VMCGGRLVEQGPAREVLLAPRHDYTRTLMAAHAPQPLKRRHAPASAETAIELDGVCVDY FT GRWKPKRALEQVTLQVRAGATLGIAGESGSGKSTLAQAIMGLLEPSAGSVRVFGLNPAA FT RRGRRAFAATCQYVFQDTSGSLNPRRTLLQTLSEPLLARGLPRASLREHCIAMLEDVGL FT APDLLARFPHQISGGQRQRVVIARALAMQPRVLICDEPVSALDASVRNQILALLARLRD FT QHGLTLVFIGHDLGVMASLADDILVMRRGRVVEHGEAARVFANPGHPFTRELLDASRLS FT DTPSPAPQARAARRQPRATTLASGFGQQALFT" FT misc_feature complement(1086010..1086573) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 5.2e-56" FT misc_feature complement(1086196..1086240) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1086529..1086552) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1086790..1087380) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.4e-47" FT misc_feature complement(1086976..1087020) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1087336..1087359) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1087479..1088399) FT /transl_table=11 FT /locus_tag="BB1006" FT /product="inner membrane component of ABC transporter" FT /note="Similar to Bacillus halodurans oligopeptide ABC FT transporter AppB or bh0348 SWALL:Q9KFX2 (EMBL:AP001508) FT (305 aa) fasta scores: E(): 3.6e-28, 32.51% id in 286 aa, FT and to Ralstonia solanacearum probable transmembrane ABC FT transporter protein rsc1381 or rs04750 SWALL:Q8XZL4 FT (EMBL:AL646064) (307 aa) fasta scores: E(): 1.4e-26, 34.69% FT id in 294 aa" FT /protein_id="CAE31505.1" FT /translation="MNALLSCATQCARQLFSIAAIAFTIFLLVRAAPGDITDYYAARGD FT YDAAGLTQLRADLGLDHGLAVQFQRWLAHASQGDFGESMRYGSPVAAMLAEAVPHTLRL FT AAASLAFGLALGVGLAVAAQAFKRLRLGALIEGLNIWSIAVPSFCTGVLGILVFSIWLK FT WLPIRGQMLLPVIILGLDIAGQIAKPLHEELKQTARAGFVRTARAKGLSSWRIIWRHVL FT PNCLSQVIALSGVILGGLVGGALTMEALFAQPGLGGLTLEAIRSRDYPVIQVAVMALAT FT FVILVNIAAAALQRWADPRLARRAA" FT misc_feature complement(join(1087521..1087589,1087647..1087715, FT 1087914..1087982,1088025..1088093,1088298..1088357)) FT /note="5 probable transmembrane helices predicted for FT BB1006 by TMHMM2.0 at aa 15-34, 103-125, 140-162, 229-251 FT and 271-293" FT misc_feature complement(1087605..1087820) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 1.7e-08" FT misc_feature complement(1088307..1088399) FT /note="Signal peptide predicted for BB1006 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.607) with cleavage site FT probability 0.546 between residues 31 and 32" FT CDS complement(1088396..1089229) FT /transl_table=11 FT /locus_tag="BB1007" FT /product="inner membrane component of ABC transporter" FT /note="Similar to Agrobacterium tumefaciens AgaC FT SWALL:O50261 (EMBL:AF242881) (275 aa) fasta scores: E(): FT 7.8e-30, 38.49% id in 265 aa, and to Bacillus halodurans FT oligopeptide ABC transporter bh0030 SWALL:Q9KGM8 FT (EMBL:AP001507) (301 aa) fasta scores: E(): 2.7e-30, 35.15% FT id in 256 aa" FT /protein_id="CAE31506.1" FT /translation="MAAAPVRPGRHWPWVLLLAAALLAAAGPALLSHDPYAQNLLARNL FT PPSAAHWLGTDNFGRDVYARIVMGTRLTLLVAFCSGAIALLGGAAVGLLACALGGAVRA FT AVYLVFDLIRTLPPILLSLALMVALGVGTGSVIVAVGISFMPLFGYVARAAYERETASG FT YVRAARVLGVAPAAIAWRHILPNIAGTLLTQLAIVVPRAVVTESVLSFFGLGVAPDVPT FT WGRIIATAVPYAEQAPTALLFPVLALALTSLALSVAGNRLRRRFDPLSRPAGACP" FT misc_feature complement(join(1088453..1088521,1088807..1088875, FT 1088936..1089004,1089137..1089196)) FT /note="4 probable transmembrane helices predicted for FT BB1007 by TMHMM2.0 at aa 12-31, 76-98, 119-141 and 237-259" FT misc_feature complement(1088534..1088764) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 1.2e-06" FT misc_feature complement(1089134..1089229) FT /note="Signal peptide predicted for BB1007 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.980) with cleavage site FT probability 0.582 between residues 32 and 33" FT CDS complement(1089229..1090779) FT /transl_table=11 FT /locus_tag="BB1008" FT /product="substrate binding component of ABC transporter" FT /note="Similar to Agrobacterium tumefaciens ABC FT transporter, substrate binding protein atu5343 or FT agr_pat_490 SWALL:Q8UJY1 (EMBL:AE008956) (517 aa) fasta FT scores: E(): 1.9e-22, 31.03% id in 406 aa, and to Rhizobium FT loti dipeptide-binding protein of ABC transporter mlr1186 FT SWALL:Q98L42 (EMBL:AP002996) (497 aa) fasta scores: E(): FT 1.8e-21, 28.38% id in 465 aa" FT /protein_id="CAE31507.1" FT /translation="MTLHSIPMHMQRRTLLKLLGAAGIGGLYPAFAHAQAAEPRRGGTL FT KIALLGLDTSDPHRHSGSIAVQQVYAETLTSIADDGTVKPFLAERFELSADGRRYTFVL FT RKDIRFHNGRALTAQDVKANFERVRDKVKGGWLSGAMKQVSSLTVAGADTLQVELQEAY FT APFLNLLSELWIIAPESPGWDDTIRQPIGTGPFTFGKWQPDVRFHAPAFDNYWQPGLPY FT LQAVEFDLRGDRDNSLSLRSGDLHVAYVGNDKLDALRNENIGVQHLKDTAWYFLSFNNR FT KPGKLMQDARVRQAIALSLDKRVYMDFVLKGALTSDQPMRPDTFYWDRALEARDPYAKP FT DLARARQLLREAGVDPAGHTLKLVSWQNDYAQVAVQMVRELGFRIDHQSLDDIGAQRAL FT ALYDWDLAPFHSGPRADVYLRYARLLSDGPSPMLWGGIQDKELDARIAAAVSAPNAQQA FT RDGYLQAWQHVMDRLYTVGIGHAADAIGVAPSVRGYATGYTWSQNRVDGGLARTWLAA" FT misc_feature complement(1089238..1090746) FT /note="HMMPfam hit to PF00496, DE Bacterial extracellular FT solute-binding proteins, family 5, score 9.3e-17" FT misc_feature complement(1090678..1090779) FT /note="Signal peptide predicted for BB1008 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.884 between residues 34 and 35" FT CDS complement(1090776..1092083) FT /transl_table=11 FT /locus_tag="BB1009" FT /product="hypothetical protein" FT /note="Weakly similar to Clostridium acetobutylicum ap FT superfamily cac0477 SWALL:Q97LS7 (EMBL:AE007562) (434 aa) FT fasta scores: E(): 0.00024, 20.63% id in 441 aa, and to FT Clostridium perfringens hypothetical protein Cpe1375 FT cpe1375 SWALL:Q8XKL9 (EMBL:AP003190) (431 aa) fasta scores: FT E(): 0.13, 20.5% id in 434 aa" FT /protein_id="CAE31508.1" FT /translation="MKSKRAILIICDSLRRDLVTARTCPTLTGLAQASTWFSRAGSVFP FT STTRVSSASIATGCRPARHGLLGNCMLLREADGLANHSAGDPGFVERLRAATGHALRVP FT TLAQRLAAHGGAAIYSNVSPGAAYFHDPDGHGRIYHRAGSYGPGRRPYSGAEALEIASG FT AAGDAEMTRRFCAMLQAPGAPAMATLWLSEPDHSGHGHALGSPAHLAAIAHAERCVAQV FT LDTVDALRARGEDILLMVGSDHGMETVLGEIDVAAALVQAGLKDSPDSRELVVAPNGTA FT CVIGIAPDAAARTAAVAAFLRRQAWCGQVFGGAALAGIGMPQDDPACALAVTMRHDPGP FT NAHGVPGAAWIAADRGDAKRYDGHGQHGGLGPNEQAPFLIAQGAGFAAGAVCDQAVSLI FT DYAPTVLRHLGLPADGMDGRPLPHSFPAPSPAHRAL" FT CDS complement(1092236..1093495) FT /transl_table=11 FT /gene="phnA" FT /locus_tag="BB1010" FT /product="phosphonoacetate hydrolase" FT /note="Similar to Pseudomonas fluorescens phosphonoacetate FT hydrolase PhnA SWALL:Q51782 (EMBL:L49465) (407 aa) fasta FT scores: E(): 1.7e-79, 52.06% id in 411 aa, and to Rhizobium FT meliloti putative phosphonoacetate hydrolase protein PhnA FT or rb0978 or smb21538 SWALL:Q92UV8 (EMBL:AL603645) (424 aa) FT fasta scores: E(): 1.7e-70, 46.42% id in 420 aa" FT /protein_id="CAE31509.1" FT /translation="MSAPIALHGRHYALPQRPTVVVCIDGCDPEYIARGIADGVCPAIA FT RFFEEGFGAVADCVMPSFTNPNNVSVVTGAPPAVHGIGGNYYLDRDTGREIMMTDAALL FT RGDTLLGLMSQAGVPTAAITAKDKLRKVLGHGLRGICFSSEKADQCSEAEHGVADVAAL FT VGRPRPDMYSGDLSLYVLDAGLALLRQGRARLLYLSLSDYIQHKHAPGEPESDAFLRAI FT DTRLQAFVDAGAVVACIADHGMSHKTDAQGRPNAIFLQDLLEARFGAGSARIICPITDP FT FVRHHGALGSFVRGYARNPADIEAMMQAAAAIDGVQEVLSREQAAQRLGLPLDREADFV FT VISHESYVLGSRADEHDLSTVGDHPLRSHGGYSEQPVPFFLSQPLSPAYRERAAQGGLR FT NFDIFDFALNGVQTQAAADA" FT misc_feature complement(1092359..1092391) FT /note="PS00133 Zinc carboxypeptidases, zinc-binding region FT 2 signature." FT misc_feature complement(1092449..1093495) FT /note="HMMPfam hit to PF01663, DE Type I phosphodiesterase FT / nucleotide pyrophosphatase, score 0.063" FT CDS 1093635..1094528 FT /transl_table=11 FT /gene="phnR" FT /locus_tag="BB1011" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas fluorescens positive FT transcriptional regulator PhnR SWALL:O69758 (EMBL:L49465) FT (299 aa) fasta scores: E(): 1.3e-57, 53.33% id in 285 aa, FT and to Agrobacterium tumefaciens transcriptional regulator, FT LysR-family atu4419 or agr_l_895 SWALL:Q8U7N0 FT (EMBL:AE009370) (306 aa) fasta scores: E(): 4.4e-28, 32.87% FT id in 292 aa" FT /protein_id="CAE31510.1" FT /translation="MSRIPPLPALRAFLAACRRGSYTAAAEELNVTHGAISRQVQQLEE FT WLGQKLFVRTGQRMAPTPHALAFAQEVSAAMQRIEDAARRYGRGSASRLLRVNAPATFA FT MRWLIPRLPDFYARNPDILVQVQTATTQQLTLAGSFDAAIRIGPVNAGHFSALPFLDEW FT HTVLAAPALLARQPLHTLEQLADHVLLDTETRPGIWQQWLNAAGCAGAIPARRLRFDHY FT YVTYSALVDGLGIALGPLPTLDHDLETGRLAQPFPDLRTPPQRYACLTPAGVVKTVAHR FT RFEDWLLERGALLARD" FT misc_feature 1093635..1093709 FT /note="Signal peptide predicted for BB1011 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.883) with cleavage site FT probability 0.539 between residues 25 and 26" FT misc_feature 1093653..1093832 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 8.1e-25" FT misc_feature 1093692..1093757 FT /note="Predicted helix-turn-helix motif with score FT 1942.000, SD 5.80 at aa 20-41, sequence FT GSYTAAAEELNVTHGAISRQVQ" FT misc_feature 1093695..1093787 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1093896..1094510 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 6e-41" FT CDS complement(1094548..1095480) FT /transl_table=11 FT /locus_tag="BB1012" FT /product="putative ornithine cyclodeaminase" FT /EC_number="4.3.1.12" FT /note="Similar to Agrobacterium tumefaciens ornithine FT cyclodeaminase ArcB or Ocd or atu6016 or agr_pti_54 FT SWALL:OCD_AGRT5 (SWALL:P09773) (354 aa) fasta scores: E(): FT 1.3e-15, 30.43% id in 276 aa, and to Rhizobium loti FT ornithine cyclodeaminase, ocd2 mlr3204 SWALL:Q98GR8 FT (EMBL:AP003001) (321 aa) fasta scores: E(): 8.9e-45, 45.59% FT id in 318 aa" FT /protein_id="CAE31511.1" FT /translation="MKTFDSQATEARLPFDRLIPALRQMFVDGCEVPRRHSHTLARRAD FT TADTLLIMPAWQEGRYLGIKHVTIYPENGAQGWPGLHSSYTLFDARNGRPLSIIDGDQI FT TVRRTAAASALAASYLARRDAARLLVVGAGNVARALAPAYAAVRAIDTVEVWDIDPGKA FT EALAAHLRDQGMRARAVADLEPAARQADIITCATLSRAPLVLRAWLRPGTHLDLIGSFQ FT PGMREADDAAFADTSVFVDTGEALEKSGDLLAPMALGLFDAGKLQATLEELCRGAHPGR FT RSDEEITVYKAVGTASEDLAAAILVYEAA" FT misc_feature complement(1094554..1095480) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02423, DE Ornithine FT cyclodeaminase/mu-crystallin family, score 2.1e-49" FT CDS complement(1095517..1096563) FT /transl_table=11 FT /gene="aphA" FT /gene_synonym="aph" FT /locus_tag="BB1013" FT /product="acetylpolyamine aminohydrolase" FT /note="Similar to Mycoplana ramosa acetylpolyamine FT aminohydrolase apha or apH SWALL:APHA_MYCRA (SWALL:Q48935) FT (341 aa) fasta scores: E(): 3.4e-49, 42.64% id in 340 aa, FT and to Rhizobium loti acetylpolyamine aminohydrolase FT mll0103 SWALL:Q98NK3 (EMBL:AP002994) (342 aa) fasta scores: FT E(): 7.8e-74, 54.3% id in 337 aa" FT /protein_id="CAE31512.1" FT /translation="MKFVHSETHRRHDPQFFIVRGQITRSTEQPERADRLLAAAQRRGH FT ERVEARDFGEAILAEVHCPRYLDFLKNGYAQWRALPGASQEITPHVHPPREESGYPVSI FT IGRAGFHIADTSSPMGPHTWEAALAASHSACTAAQLVIEGAPAAYSLSRPPGHHATRDR FT AGGFCFLNHTAVAAQWLRHHVARVAILDVDVHHGNGTQDIFYERDDVLHVSLHADPAYF FT YPFFTGYAQETGRGIGAGCNLNLPLPIGTDDEAFLAALRIACRRVLDFKPDVVVVALGL FT DTYEGDPLNAFRITTPGFARIGQAIAGLALPTVLVQEGGYLSDELGENLATFLDGFCQH FT HRPTATLR" FT misc_feature complement(1095547..1096488) FT /note="HMMPfam hit to PF00850, DE Histone deacetylase FT family, score 1.8e-58" FT CDS complement(1096604..1097716) FT /transl_table=11 FT /gene="leuB" FT /locus_tag="BB1014" FT /product="3-isopropylmalate dehydrogenase" FT /EC_number="1.1.1.85" FT /note="Similar to Pseudomonas aeruginosa 3-isopropylmalate FT dehydrogenase LeuB or pa3118 SWALL:LEU3_PSEAE FT (SWALL:Q51375) (360 aa) fasta scores: E(): 5.9e-61, 48.09% FT id in 368 aa, and to Agrobacterium tumefaciens FT 3-isopropylmalate dehydrogenase LeuB or atu2791 or FT agr_c_5067 SWALL:LEU3_AGRT5 (SWALL:P24404) (370 aa) fasta FT scores: E(): 6e-62, 46.72% id in 366 aa" FT /protein_id="CAE31513.1" FT /translation="MSEQNRLLLIGGDGVGAEVVHEAGRIAQWFAARRGLPLSIGQAAF FT GVEVLNRTGRIMTDDTLAQIRAADAVLFGAIGGPEYDRLPLEQVREEGLLRIRRELGLY FT ANLRPVRYWPALAELCPFVPERVEKVDMMIVRELAGGIYYASPRGIDQTGDGRRVGTNT FT QRYDDLEIRRIARVAFELARARGGRVCSVDKSNVLESGLLWREEVQACRDAEYPDVELE FT HILVDNCALQLCLRPARFDVLLADNLFGDILSDAAGAVAGSLGMLPSASFGAEDGGRRR FT GFYEPVHGSAPDIAGQGIANPLGAILSLALALRWTFRQPAEADLLERAVERALAGGART FT LDLLAGAAAPALSTRAMADAVLQALETLAA" FT misc_feature complement(1096634..1097701) FT /note="HMMPfam hit to PF00180, DE FT Isocitrate/isopropylmalate dehydrogenase, score 1.6e-139" FT misc_feature complement(1096919..1096978) FT /note="PS00470 Isocitrate and isopropylmalate FT dehydrogenases signature." FT CDS complement(1097720..1098349) FT /transl_table=11 FT /gene="leuD" FT /locus_tag="BB1015" FT /product="3-isopropylmalate dehydratase small subunit" FT /EC_number="4.2.1.33" FT /note="Similar to Alcaligenes eutrophus 3-isopropylmalate FT dehydratase small subunit LeuD SWALL:LEUD_ALCEU FT (SWALL:Q44022) (208 aa) fasta scores: E(): 1.6e-26, 43.47% FT id in 207 aa, and to Rhizobium loti 3-isopropylmalate FT dehydratase small subunit LeuD or mll4408 SWALL:Q98E51 FT (EMBL:AP003004) (201 aa) fasta scores: E(): 8.3e-30, 43.56% FT id in 202 aa" FT /protein_id="CAE31514.1" FT /translation="MTPFIQHQGVAASLPMANIDTDVIVRVERLVALDPGQFGPYAFEV FT LRYRPDGSENPDFVLNREPWRHASILLCGPNFGCGSSRESAVWALADFGIRCVIGTTYG FT DIFRANCLQNGVLPISLDAAALERVRQAAEASPGRPLVVDLRQRLITDAAARLAQPFEI FT DDFWREALMAGADQIQRTLRLSDRIDAFQQAHRARAPWAYDTQIQE" FT misc_feature complement(1097840..1098349) FT /note="HMMPfam hit to PF00694, DE Aconitase C-terminal FT domain, score 3.5e-38" FT CDS complement(1098390..1099784) FT /transl_table=11 FT /gene="leuC" FT /locus_tag="BB1016" FT /product="3-isopropylmalate dehydratase large subunit" FT /EC_number="4.2.1.33" FT /note="Similar to Escherichia coli 3-isopropylmalate FT dehydratase large subunit LeuC or b0072 SWALL:LEU2_ECOLI FT (SWALL:P30127) (465 aa) fasta scores: E(): 4.1e-84, 49.02% FT id in 459 aa, and to Brucella melitensis 3-isopropylmalate FT dehydratase large subunit LeuC or bmei0157 SWALL:Q8YJC9 FT (EMBL:AE009458) (469 aa) fasta scores: E(): 8.4e-89, 52.18% FT id in 458 aa" FT /protein_id="CAE31515.1" FT /translation="MAARTLFDKIWDNHVIASTEEGDVLHVDRHYLHDLGGAPALKALA FT ARGLAVRAPDLTVAIPDHTVATGPGRVSPIPHIVLRLVDDLQARCQAAGIRYIAADDDA FT HGIVHVIAPEQGLTLPDMIVVCCDSHTCTHGALGAIGFGIGSSEVEHVLATQAIVQRKP FT RQLRVRLHGRRRPGVTAKDVALHLVSVIGAAGGSGHAVEYAGEAVAAMDIEERMTLCNL FT SIEFGAKIGLIAPDDTTFAWLAGRRHAPRGARLQQALAAWRALRSDADAVFDRELDLDL FT GALAPQITWGTSPQDAMDVAGVAPDPRGYADPARQRAAAAGQAYLGVTPGAPLAGLAVD FT RVFIGSCANGRLDDLRAAAAQVRGRRVADHVTAWVVPGSQAVKRQAEAEGLARVFTDAG FT FDWREPGCSMCLAANGELAEPGQRVVATSNRNFVGRQGRDVRTHLASPATAAACAIAGV FT IAAPLP" FT misc_feature complement(1098414..1099772) FT /note="HMMPfam hit to PF00330, DE Aconitase family FT (aconitate hydratase), score 2.1e-167" FT misc_feature complement(1098549..1098590) FT /note="PS01244 Aconitase family signature 2." FT CDS complement(1099789..1100853) FT /transl_table=11 FT /locus_tag="BB1017" FT /product="putative exported protein" FT /note="Similar to Ralstonia solanacearum probable signal FT peptide protein rsc1198 or rs05730 SWALL:Q8Y046 FT (EMBL:AL646063) (349 aa) fasta scores: E(): 3.9e-52, 48.67% FT id in 339 aa, and to Brucella melitensis taurine-binding FT periplasmic protein precursor bmeii0963 SWALL:Q8YBD7 FT (EMBL:AE009729) (320 aa) fasta scores: E(): 6.3e-45, 42.35% FT id in 314 aa" FT /protein_id="CAE31516.1" FT /translation="MHDLLQPLRRGMARGLFACSALLGATLLPASAGAAKPIAVTLAVG FT GKSSVNYLPLTLAERLGYFKDEGLDVKITDFASGSKALQSLVGGSADVVMGYYDHTIQM FT HAKNQDIRAFVQTGRYPGLVMGVTKGFADKYRGLQDLKGARVGVIGPGSSTHFMLNYLL FT QKEGVALDAPSIVAVGVGPMVVAAVKQQKVDVVVNVEPVTTMMERDGDIKVVADTRTEA FT GTRAVYDGIYPAAVLYARNGLLEKQPEVAQKLASAMVRTLQWIAAATPQQIVDAMPSDY FT YLGDKALYLAVIEKSIHLYSPDGLMRQEDAETAYRVLKKFDNSVAKAGDFDLHQTYTND FT FVTRATASLAAAKP" FT misc_feature complement(1100752..1100853) FT /note="Signal peptide predicted for BB1017 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.803 between residues 34 and 35" FT CDS complement(1100946..1101698) FT /transl_table=11 FT /locus_tag="BB1018" FT /product="probable transmembrane permease ABC transporter FT protein" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane permease ABC transporter protein rsc1200 or FT rs02669 SWALL:Q8Y044 (EMBL:AL646063) (263 aa) fasta scores: FT E(): 1.1e-60, 68.18% id in 242 aa, and to Brucella FT melitensis taurine transport permease protein tauc FT bmeii0962 SWALL:Q8YBD8 (EMBL:AE009729) (263 aa) fasta FT scores: E(): 4.1e-53, 57.76% id in 251 aa" FT /protein_id="CAE31517.1" FT /translation="MVAVTRLAILAGFLAAWHLLSETGVLPVFFFGQPVEVARTVADWF FT ASGEIYPHLLVTLAETLLSFGLGSATGLAVGLWLALHPFWAAVFDPFIKAINSMPRVVF FT APIFAVWFGLGIGSKVALGVTLVFFVVFFNVYQGVRDVNPNVVASARMLGARPRDLLRH FT VYLPSATSWLFSSLHNAVGMAFVGAVIGEYLGSSAGVGYLILQAEGVFDINTVFAGIVV FT LTLFAVILDFVVSIAEKRLLSWQPANRP" FT misc_feature complement(join(1100988..1101056,1101090..1101158, FT 1101303..1101371,1101432..1101500,1101612..1101680)) FT /note="5 probable transmembrane helices predicted for FT BB1018 by TMHMM2.0 at aa 7-29, 67-89, 110-132, 181-203 and FT 215-237" FT misc_feature complement(1101072..1101287) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 0.021" FT misc_feature complement(1101636..1101698) FT /note="Signal peptide predicted for BB1018 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.659) with cleavage site FT probability 0.566 between residues 21 and 22" FT CDS complement(1101745..1102578) FT /transl_table=11 FT /locus_tag="BB1019" FT /product="ATP-binding ABC transporter protein" FT /note="Similar to Ralstonia solanacearum probable FT ATP-binding ABC transporter protein rsc1199 or rs02665 FT SWALL:Q8Y045 (EMBL:AL646063) (270 aa) fasta scores: E(): FT 1.7e-59, 67.17% id in 262 aa, and to Brucella melitensis FT taurine transport ATP-binding protein TauB bmeii0961 FT SWALL:Q8YBD9 (EMBL:AE009729) (281 aa) fasta scores: E(): FT 1.9e-46, 53.48% id in 258 aa" FT /protein_id="CAE31518.1" FT /translation="MSMPVNGTPGDATPAIEFQGAEKTYFGSTPAKDYAALAATTLSIA FT QGEFVSIVGPTGCGKSTLLNLVAGLMQPSAGRVRVFGETLADVNTRAGYLFQADTLLPW FT RSALDNVKAGLAFHRVPAAEAEARARDWLSRVGLAAHVHKLPHELSGGMRKRVALAQTL FT VLDPNIILMDEPFSALDVQTRLLMENELLDLWMSSRKTVLFVTHDLEEAISLSDRVVVL FT SAGPATRPIAEFAIDLPRPRDVSEIRLTPEFSELHRKIWDAMKNEVLKAYAGRTH" FT misc_feature complement(1101904..1102440) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.1e-59" FT misc_feature complement(1102090..1102134) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1102396..1102419) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1102731..1103642) FT /transl_table=11 FT /locus_tag="BB1020" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator pa0877 SWALL:Q9I568 FT (EMBL:AE004522) (298 aa) fasta scores: E(): 2e-34, 34.01% FT id in 294 aa, and to Brucella melitensis transcriptional FT regulatory protein, LysR-family bmeii1077 SWALL:Q8YB24 FT (EMBL:AE009740) (294 aa) fasta scores: E(): 5.6e-34, 34.12% FT id in 296 aa" FT /protein_id="CAE31519.1" FT /translation="MQRLRFDLVTLRLFVAVYEERSLSKAAEREFIAPSALSKRITDME FT QMLNRELFIRNHRGIEPTPLAEQMMPYVRNVMRDLAQMSEMAHGDEHGISGYVRIITTM FT AATCQYLPRELALFLQRYPGIRVDLQEDVSQIVADAVHEGTADLGIMFAGANTAGLQMF FT PYHMDVLTALVPNDHPLASCAALKLGQLLDYEIVGPRKGSTLESLILQAARELGRDIKP FT RMRISAFDTLCQMVHEDLGVAVVPRHYLNQINRAIAVTPVPLDETWAARQLYVCVKDLE FT RLPVAARMLLTFLQEQRFAGVE" FT misc_feature complement(1102746..1103372) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 7.1e-36" FT misc_feature complement(1103442..1103621) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 7.3e-19" FT misc_feature complement(1103487..1103579) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1103517..1103582) FT /note="Predicted helix-turn-helix motif with score FT 1276.000, SD 3.53 at aa 21-42, sequence FT RSLSKAAEREFIAPSALSKRIT" FT CDS 1103786..1104172 FT /transl_table=11 FT /locus_tag="BB1021" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas putida hypothetical 15.9 kDa FT protein SWALL:Q8VMK3 (EMBL:AJ344068) (138 aa) fasta scores: FT E(): 1.2e-23, 50.42% id in 117 aa, and to Rhizobium FT meliloti hypothetical protein rb0250 rb0250 or smb20260 FT SWALL:Q92WS9 (EMBL:AL603642) (130 aa) fasta scores: E(): FT 4.5e-18, 48.43% id in 128 aa" FT /protein_id="CAE31520.1" FT /translation="MRIGEALKAWARRIRRDGVTLWFAVRHPGTPWYAKALGLLVVAYA FT LSPIDLIPDFIPVLGYVDDVLLLPALIWLAIRMVPPQVLAQCRNQADEWMRVRGGKPRV FT RAGAVLVVAVWLAAGAALWWWLGT" FT misc_feature join(1103876..1103944,1103957..1104025,1104095..1104163) FT /note="3 probable transmembrane helices predicted for FT BB1021 by TMHMM2.0 at aa 13-35, 40-62 and 86-108" FT CDS complement(1104180..1104710) FT /transl_table=11 FT /locus_tag="BB1022" FT /product="putative acetyltransferase" FT /note="Similar to Bacillus subtilis probable FT acetyltransferase YdaF SWALL:P96579 (EMBL:AB001488) (183 FT aa) fasta scores: E(): 4e-08, 27.84% id in 176 aa, and to FT Staphylococcus aureus Mw0318 protein SWALL:BAB94183 FT (EMBL:AP004823) (181 aa) fasta scores: E(): 1.6e-12, 27.48% FT id in 171 aa" FT /protein_id="CAE31521.1" FT /translation="MEPIVFEGLVFRAFRNADARSFADAARESTGTVGRWMPWCTPSFS FT EQDALAWFQLCRDSLDAGTGYEFGVFSQGSGALLGGAGLNAINRQNRFCNLGYWVRQSA FT QRRGVAPRTVQALAPYAFGTLGMQRVEIVIAAGNHASEAVARKVGAQFEGIARNRLQLH FT GAAVSASVYALVP" FT misc_feature complement(1104258..1104503) FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 6e-06" FT CDS complement(1104758..1104895) FT /transl_table=11 FT /locus_tag="BB1023" FT /product="putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE31522.1" FT /translation="MPTLQMLLLFLALASKMLGLATGAAFAYGASRIRGWLLLSRDPVR FT " FT misc_feature complement(1104815..1104895) FT /note="Signal peptide predicted for BB1023 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.967 between residues 27 and 28" FT CDS complement(1104915..1105838) FT /transl_table=11 FT /locus_tag="BB1024" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli cyn operon FT transcriptional activator CynR or b0338 SWALL:CYNR_ECOLI FT (SWALL:P27111) (311 aa) fasta scores: E(): 7.6e-17, 30.16% FT id in 305 aa, and to Xylella fastidiosa oxidative stress FT transcriptional regulator xf1532 SWALL:Q9PD47 FT (EMBL:AE003983) (325 aa) fasta scores: E(): 3.9e-17, 29.54% FT id in 308 aa" FT /protein_id="CAE31523.1" FT /translation="MNLSLRDIEYFLAVIEHGSLGRAATACGVTQPALSKSLQRLEADT FT GLALLERGGRGLRLTSAGLAFREHAQKLWAQYRDAVRHAMELRVGEAGLLRVGATGATM FT DAYVMPALQRLLPLRPALRVQLTQGLSDDLNAQVASGRLDLAVIPIYGDIQPALRQDLI FT AEDGLCVAARQGHPLAARRKLSLRDLEGHRWILPHPSSVARQALDQRYADAGLQPPPAA FT LEVQHFSSGALAMLARSDVLALLPQSALQMGAAIAVLPVALGRSMRRSIVLISRHGAAW FT SPLMSEFRAAVLGGMAQDGPHYNSSP" FT misc_feature complement(1104948..1105577) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.1e-29" FT misc_feature complement(1105647..1105826) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.3e-24" FT misc_feature complement(1105692..1105784) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1105722..1105787) FT /note="Predicted helix-turn-helix motif with score FT 1539.000, SD 4.43 at aa 18-39, sequence FT GSLGRAATACGVTQPALSKSLQ" FT CDS 1105937..1107268 FT /transl_table=11 FT /locus_tag="BB1025" FT /product="probable sulfatase" FT /note="Similar to Homo sapiens arylsulfatase a precursor FT ArsA SWALL:ARSA_HUMAN (SWALL:P15289) (507 aa) fasta scores: FT E(): 1.9e-42, 35.63% id in 449 aa, and to Rhizobium FT meliloti putative arylsulfatase protein AslA1 or rb1214 or FT smb20915 SWALL:Q92UC0 (EMBL:AL603646) (537 aa) fasta FT scores: E(): 3.8e-36, 33.1% id in 438 aa" FT /protein_id="CAE31524.1" FT /translation="MSTKPNIVLIVADNLGWGELGCYGGGALRGAPTPNIDRLASQGLL FT LQNFNVESDCVPTRSALMSGRHPIRTGCLQSVPPGLPQGLARDEITLAQQLSGQGYATA FT HYGKWHLGDVPGRYPSDRGFDEWYGIPRTTDESQFTASIGFDPAVADLPYIMQGRAGEP FT SENVKLYDLESRRRIDEELVERSLGFMRGNAAAGRPFFLYLPLVHLHFPTLPHPDFAGR FT TGAGDFADSMVEMDHRVGQVMAAVDELGLGDDTVFIFCSDNGPEFRKPYRGTAGPWSGT FT YHTAMEGSLRVPFIVRWPGRVQPGRVSNEMVHVTDLFTTLSLIGGATVPQDRPIDGIDQ FT TAFLTGASQTSPREGFLFYIKNDLRAVKWRDWKLHFYWEPEVNEGKGKLESPYLFNLKQ FT DPKEESDILIFNTWVLGPIMKMVQAFNQSCAAHPNTPPGRPDRA" FT misc_feature 1105949..1107139 FT /note="HMMPfam hit to PF00884, DE Sulfatase, score 5.7e-91" FT CDS 1107309..1108271 FT /transl_table=11 FT /locus_tag="BB1026" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 2e-28, 33.12% id in 323 aa, and to FT Pseudomonas putida, and Pseudomonas sp. hypothetical 34.5 FT kDa protein in clcb-clcd intergenic region precursor FT SWALL:YCLC_PSEPU (SWALL:Q47100) (329 aa) fasta scores: E(): FT 5.1e-28, 35.39% id in 308 aa" FT /protein_id="CAE31525.1" FT /translation="MKFTLTCAAAALGLALASPAGAAADPLDWPARQITWLVGFVPGGT FT ADVLTRIAAQELARNTGLNVVVENRPGASGAIALQLLARSKAADGYLLTVPGPIIYPTP FT QPEVGAALAPVVLMAQGPMVVVGPAKDARADLQAVLADARKRPEAWSYGSSGTGTSQHL FT AGELLNQYAGTRIVHVPYKGGGQAVADVSGGQIPLAILGSSTVLPQIKSGALKGYAVTT FT TYRLDSLPEVPTVAQSGFKDFDASQWFSVAASNTIAARQLDQMNAALRAAMDTPQFKTA FT VANAGMVAGGGSREDLLKFIQTDRAKWRKLIDSGAVKLD" FT misc_feature 1107309..1107374 FT /note="Signal peptide predicted for BB1026 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.644 between residues 22 and 23" FT misc_feature 1107453..1108259 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.5e-57" FT CDS complement(1108387..1109343) FT /transl_table=11 FT /locus_tag="BB1027" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Azorhizobium caulinodans Nac protein FT SWALL:O66393 (EMBL:AJ006238) (311 aa) fasta scores: E(): FT 3.3e-27, 33.97% id in 312 aa, and to Agrobacterium FT tumefaciens transcriptional regulator, LysR family Nac or FT atu4279 or agr_l_1169 SWALL:Q8U820 (EMBL:AE009356) (301 aa) FT fasta scores: E(): 1.7e-19, 27.74% id in 310 aa" FT /protein_id="CAE31526.1" FT /translation="MPIDLRNLRYFVAVATCGSISKAAGEVHVAQPALSLHMKRMEEEL FT GVRLLERTAKGIVLTAAGQRFLAHSQDLLARAQFACDDVRDAASEPTGPVSIGMSQSTG FT MALTVRLVQEALRRWPRLDLQIIESSTGHVPGHLRDRDVDLGITFLRERNSGLRYRKLI FT DEELVLLGPPGAFGANGSRDDHRRMREVDFRDIAALPLFLPSHRHSLRQLIERHASQAQ FT ARMRVLADVDAVPQLISLCAEGLGYTILSYPAVRADVLQRRVCAARLVNPQVERQVFLC FT RLENAPASNAALAMESLIVETVESLVREGKWIGRPGN" FT misc_feature complement(1108432..1109082) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.6e-33" FT misc_feature complement(1109152..1109331) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.1e-25" FT misc_feature complement(1109197..1109289) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1109227..1109292) FT /note="Predicted helix-turn-helix motif with score FT 1097.000, SD 2.92 at aa 18-39, sequence FT GSISKAAGEVHVAQPALSLHMK" FT CDS 1109472..1110446 FT /transl_table=11 FT /locus_tag="BB1028" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 3.4e-43, 40.86% id in 323 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 9.9e-38, 37.8% FT id in 328 aa" FT /protein_id="CAE31527.1" FT /translation="MPTRRSFMLGAGALLAAPALGSPAWPSKPLRIVVPFPPGGPTDFV FT VRQLSVPLAAALGQPVVVENRPGVSGNLGAQAVAESEPDGYTLIHNTVGVQAINPLMFP FT NARVDPRKDFIGIATTATMPNVVVVNPARLPVASLRELVELGRAQPNRLSVATFGPGTS FT AHIYGALLQKIGGFTAVEVPYRGSPLALTDVIGGQVDFLFDSMTTSIGHVQAGTLRALA FT VTAPQRTALLPDVPTMAEAGFGGIDLKFWFALYAPARTPAPIVEKLRAAIYKVLSEPAY FT AEGLRARGAEPLLVAPSALEQFLATDTQRWSDAARQVGIKAQA" FT misc_feature 1109472..1109534 FT /note="Signal peptide predicted for BB1028 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.972 between residues 21 and 22" FT misc_feature 1109604..1110431 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.4e-84" FT CDS 1110443..1111219 FT /transl_table=11 FT /locus_tag="BB1029" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="Similar to Clostridium thermosaccharolyticum FT crotonase crT SWALL:P97087 (EMBL:Z92974) (259 aa) fasta FT scores: E(): 4.8e-22, 31.87% id in 251 aa, and to FT Thermoanaerobacter tengcongensis enoyl-coa FT hydratase/carnithine racemase caid or tte0544 SWALL:Q8RC92 FT (EMBL:AE013024) (260 aa) fasta scores: E(): 1.5e-21, 31.87% FT id in 251 aa" FT /protein_id="CAE31528.1" FT /translation="MTDGAIAYAVNEGIAEIVLARPPVNALDLATVRSLIAALARARQD FT AEVRAVIIGSATPGRFCAGLDLGQVQGRSTLEMHELLSTLYVALHQAQAGLGKPSIAAI FT DGAARGAGMTIAISCDVLVCDASATFGYPEIDVGLIPGIHFAHLPRIVGKHRAFELLFS FT GRAFDAPEAASLGLVSRVVPAGQAMAQARELARIFAAKPPTVMRLARAAFVRTVDMGYE FT RSVAEVVETFCTVAGTDEAREGVAAFAARRAPGWAK" FT misc_feature 1110485..1110991 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 7.4e-43" FT misc_feature 1110743..1110805 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(1111258..1112229) FT /transl_table=11 FT /locus_tag="BB1030" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 9.8e-48, 45.06% id in 324 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 1.3e-40, 40.74% FT id in 324 aa" FT /protein_id="CAE31529.1" FT /translation="MTTRRSFVALLAASALAPALAAAQAFPSQPITLVVPFPPGGVTDI FT TARIVAQALEKKIGANIVVENRGGAGGNIGASVVARAKADGYTLLYGTQGVLAANPYLY FT KSINFDVQKDFTPVGLTYETAHMLVVRPDLPARTTEEFIALAKASPGKLVYGSSGVGGG FT SHLFMEYFQHSAGIKLLHAPYKGGGPALTDLLGGRLDAMLDSIPSAATQVKAGKLRALG FT VSGAQRDPEFPDVPTLAEGGAKDFAAVSWGAIMAPAGTPDDVVRKLSLALSQAIDEPGT FT RKLMAERGASVNPSTPEQAAQRIAQDQERWSTVIREAGISAE" FT misc_feature complement(1111270..1112094) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 6.7e-117" FT misc_feature complement(1112161..1112229) FT /note="Signal peptide predicted for BB1030 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.521 between residues 23 and 24" FT CDS 1112547..1113467 FT /transl_table=11 FT /locus_tag="BB1031" FT /product="3-hydroxyisobutyrate dehydrogenase" FT /EC_number="1.1.1.31" FT /note="Similar to Pseudomonas aeruginosa FT 3-hydroxyisobutyrate dehydrogenase MmsB or pa3569 FT SWALL:MMSB_PSEAE (SWALL:P28811) (298 aa) fasta scores: E(): FT 6.2e-21, 35.5% id in 276 aa, and to Rhizobium meliloti FT hypothetical protein rb1375 rb1375 or smb20668 SWALL:Q92TW9 FT (EMBL:AL603646) (301 aa) fasta scores: E(): 1.9e-34, 44.48% FT id in 290 aa" FT /protein_id="CAE31530.1" FT /translation="MSDAAPMRIGFIGLGAMGGPICGHLAAAGHDVAAYDIQPAAVQAA FT AARGARPAASVREAADGAALLVVMVHNAGQADAVLFGEGGAAAALPAGATVWLASTVAP FT AYARGLQARLREHGAGLVDGPVSGGATGAQAGALTIIASGQAQALAAAEPAMRACSSII FT HRVGEEAGAASTVKLVNQLLTASHIALTAEALALGARAGVDPDVLVKVISQSAGTSRQF FT EKRAPRMAAGDHAPQSTVDIFLKDLEIALDAARALRFPVPIAASAHQVFSMAAGAGDGP FT NSDTTVLRVYERNGGVDVAAARKEA" FT misc_feature 1112568..1112921 FT /note="HMMPfam hit to PF02254, DE TrkA-N domain, score FT 0.015" FT CDS 1113464..1114324 FT /transl_table=11 FT /locus_tag="BB1032" FT /product="hypothetical protein" FT /note="Similar to the N-terminal region of Rhodobacter FT sphaeroides molybdenum cofactor biosynthesis protein a moeA FT SWALL:Q9ZFA5 (EMBL:AF108766) (394 aa) fasta scores: E(): FT 0.47, 26.59% id in 282 aa" FT /protein_id="CAE31531.1" FT /translation="MIMAQFPHRADEGASRGEVLLAPTTTKLPDAAPGAVIVSGSHGGR FT YPGYTVAGAGVRAVILNDAGVGKDGAGTGSLPYLEALGIAAATVSHASCRIGDAEDMMA FT RGTISHANAAAAACGVVAGQPCAQAAELLRNAPWRRVDPPRLGEARSEDVPAGAVRRIV FT LLDSAALVQPGDAGQIVVTGSHGGLVGGVPAMALRTDAYAAVFNDAGGGADDAGLTRLP FT ALDERGIAAFVVAAGSARIGEAVSSYRDGVISRANRTAQRLGAMPGAPALQVLQAWAMG FT NPYRI" FT CDS 1114349..1115044 FT /transl_table=11 FT /locus_tag="BB1033" FT /product="putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid FT aldolase" FT /EC_number="4.1.2.-" FT /note="Similar to Escherichia coli FT 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or FT HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: FT E(): 8.6e-07, 26.93% id in 245 aa, and to Yersinia pestis FT 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpaI or FT ypo1767 SWALL:Q8ZFE7 (EMBL:AJ414150) (268 aa) fasta scores: FT E(): 3.7e-08, 28.76% id in 219 aa" FT /protein_id="CAE31532.1" FT /translation="MSAATFKAKLAARQTASLVNPDHPSSSLVSFMCTLGVDAFMLDCE FT QGSPSFENIEDMTRAARLGGAASLVRIPSPEPWTIERYMMRGVDGLVVPRLDDAATAAR FT VVDDIRYCAPRDFDRKTVIVQIESAQAVAGLDDFLAVDHIDCYFIGVVDLSKSMGFRGD FT YGGPEVMAALDETVARILRAGKCAGIMVKEHDLAAWSGKGVSMLYTHLNDFAAMGARSW FT RALAKVDGV" FT misc_feature 1114442..1115017 FT /note="HMMPfam hit to PF03328, DE HpcH/HpaI aldolase FT family, score 1.3e-08" FT CDS 1115041..1116402 FT /transl_table=11 FT /locus_tag="BB1034" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT rb0380 or smb20394 SWALL:Q92WF9 (EMBL:AL603643) (442 aa) FT fasta scores: E(): 1e-47, 41.13% id in 440 aa, and to FT Rhizobium loti hypothetical protein Mll7005 SWALL:Q987L2 FT (EMBL:AP003010) (438 aa) fasta scores: E(): 2.1e-44, 39.41% FT id in 444 aa" FT /protein_id="CAE31533.1" FT /translation="MSPGGPVCFYGDDFTGATAHLAGFHEAGLNALMFLRTPTLAQAQR FT HLADEDVLGVAGISRSLAPAAMDQEIGPAFALFRALGARQAHYKICSTFDSSPRLGSIG FT RAIEIGRACFGAAPVPVVPACPSFGRYVVFGNLYAQAGDAVHRLDRHPAMSRHPATPMN FT EADLRRHLAGQTTLASALVDWRAVRAGGPALAEAWREAAAGDPGAVVFDTLEDADLDRI FT AAMLWEASAARPLFCVAAQGLAEGLGRHMAQVTLARRRVQAGIADAGPMLVLSGSAAPQ FT NAVQIERALAAGWEGIRVDMARALSETDRPGLAREVGEAMLAALRGGRSVVAYTARGPD FT DPAIGQVRGLGLSEDVSVAAVTGLLFAQWARLAVQGAGLGRLVLAGGDTSSLAMRGLDA FT YALRIAAIARQGGRLCRLVSDQDWLDGVEVMLKGGQVGGPDAFVDAARAEAWRV" FT CDS complement(1116443..1117714) FT /transl_table=11 FT /locus_tag="BB1035" FT /product="putative ribulose bisphosphate FT carboxylaseoxygenase,large subunit" FT /EC_number="4.1.1.39" FT /note="Similar to Chlorobium limicola f.sp. FT thiosulfatophilum rubisco-like protein RbcL SWALL:Q9AMC5 FT (EMBL:AF326322) (434 aa) fasta scores: E(): 4.1e-40, 33.33% FT id in 408 aa, and to Rhizobium meliloti putative ribulose FT bisphosphate carboxylaseoxygenase, large subunit protein FT rbcl or rb0379 or smb20393 SWALL:Q92WG0 (EMBL:AL603643) FT (418 aa) fasta scores: E(): 1.7e-61, 45.52% id in 413 aa" FT /protein_id="CAE31534.1" FT /translation="MSDRFEATYLIETPHDVASVAQELAGEQSTATSSRMPGETDALIR FT DFGARVEHIEALPPAEAPSLPVAHTLGQRVHRARLTLSWPLHNIGDSLPMLLTTLLGNQ FT TGMRRLSGIRLERVAMPQSFIAAQPRPAFGIAGTRRLTGVQGRPLIGSIVKPNIGLAPE FT QTAAMARQLAEGGVDFIKDDELLANPPYSPVARRAALVLRALDEAAQRTGRRTMYAVNI FT TDGLDEMRRHHDAVVQAGGTCIMVNLNSVGLSALLALRRHSQLPIHGHRAGWAMMTRCP FT ALGMEFQPYQMLHRLAGVDHLHVSGLGGKFWEHADSVLQAAHECLTPLDTQAGAADDRA FT LPVFSGGSTIFDVAPTYQGIGTADLIFASGGGIFGHPDGLAAGCASLRQAWEAAIAGQE FT LRAYAQSRPELAAALARGKPVRKA" FT misc_feature complement(1116449..1117315) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00016, DE Ribulose bisphosphate FT carboxylase large chain, catalytic domain, score 7.2e-25" FT misc_feature complement(1117142..1117162) FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT misc_feature complement(1117163..1117189) FT /note="PS00157 Ribulose bisphosphate carboxylase large FT chain active site." FT CDS 1117890..1118771 FT /transl_table=11 FT /locus_tag="BB1036" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas syringae trpba operon FT transcriptional activator TrpI SWALL:TRPI_PSESY FT (SWALL:P34818) (298 aa) fasta scores: E(): 3.3e-37, 43.52% FT id in 301 aa, and to Pseudomonas aeruginosa trpba operon FT transcriptional activator TrpI or pa0037 SWALL:TRPI_PSEAE FT (SWALL:P11720) (295 aa) fasta scores: E(): 3.8e-37, 42.28% FT id in 298 aa" FT /protein_id="CAE31535.1" FT /translation="MSRIPSFTTLRAFEAVARLGNMTRAAEELSVTHSAISKQVQALEE FT EFGIQLLRRMPRAIEPTPEGARLAATLGTAFGLIEAGINQLRPGPLSLSCSASIMMRWL FT IPRLANFKKMRPDIDLRVSADHGPVDLLREGIDVAIRNNVVPTPQDVVIKPLMREWVGP FT VCSPEYASSVPLRALADLGAARLLTTSSRPDAWSDWAALSGWAGEPLAEHESFEHFYLV FT LHAAACGLGVAMAPRFLVADDLASGRLVAPFGFLEGRRTVVLWITPQLRTREDIRALSD FT WLQAEALQADAD" FT misc_feature 1117908..1118087 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.2e-24" FT misc_feature 1117947..1118012 FT /note="Predicted helix-turn-helix motif with score FT 1675.000, SD 4.89 at aa 20-41, sequence FT GNMTRAAEELSVTHSAISKQVQ" FT misc_feature 1117950..1118042 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1118139..1118753 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1e-27" FT CDS complement(1118782..1119681) FT /transl_table=11 FT /locus_tag="BB1037" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator pa3594 SWALL:Q9HY32 FT (EMBL:AE004780) (295 aa) fasta scores: E(): 2.4e-41, 44.56% FT id in 285 aa, and to Deinococcus radiodurans FT transcriptional regulator, LysR family dr0615 SWALL:Q9RWQ1 FT (EMBL:AE001919) (317 aa) fasta scores: E(): 2.2e-32, 38.48% FT id in 304 aa" FT /protein_id="CAE31536.1" FT /translation="MTTGIELRHLKHFAALAEELHFGRAARLCNISQPPFSVSIRQLEE FT QLGFALVERSSRDVRLTPAGTAFYSEACKALSQVRQAADVAARVHGGLDGVLCVGFFAS FT MLYRGLDRAVDRFRATYPTVDLQLLELSTSDQIPALLRRHIHYGFVHSTRLPAEIAAGE FT LLREPFLLCLPERHPARHRRRQKLADFRAEPFVLFSRTFSPSYYDQVVARCLAAGFHPD FT IKHQVRHWLTVVACVSKGMGITLVPRALSRADLPGVRFSAIEDSTVESIVHGAWLKGDG FT DSAIVQAWHRVVRQEIGA" FT misc_feature complement(1118788..1119414) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.2e-39" FT misc_feature complement(1119484..1119663) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 5.6e-25" FT misc_feature complement(1119529..1119621) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1119559..1119624) FT /note="Predicted helix-turn-helix motif with score FT 1193.000, SD 3.25 at aa 51-72, sequence FT LHFGRAARLCNISQPPFSVSIR" FT CDS 1119810..1120586 FT /transl_table=11 FT /locus_tag="BB1038" FT /product="probable enoyl-CoA hydratase" FT /EC_number="4.2.1.17" FT /note="Similar to Escherichia coli probable enoyl-CoA FT hydratase PaaF or b1393 SWALL:PAAF_ECOLI (SWALL:P76082) FT (255 aa) fasta scores: E(): 5e-20, 33.06% id in 245 aa, and FT to Bacillus halodurans enoyl CoA hydratase YngF or PhaA or FT bh0201 SWALL:Q9Z9V2 (EMBL:AB011837) (257 aa) fasta scores: FT E(): 4e-23, 31.78% id in 258 aa" FT /protein_id="CAE31537.1" FT /translation="MAQFVQYEVVEGVAEITMNRGPVNAIDMQLAREVVDAYQRARHDD FT AAGAVILKSALPTVFSAGVDLKVALEFDGQALRRLIEVFYYEMHEALYRMGKPVIAAVN FT GHARAAGVTWAVSCDMVVAAEEAGMGYPEIDVGLLPAMHLVHLPRQAGRHRAAQLLFTG FT DIVSAREMMALGVVNEVVPRDQVLERARTLARRLARKSPLAMRLLRDAFMRANDLDYRR FT AMESVVETMCLLKESEDSREALSAFVEKREPVFRGR" FT misc_feature 1119849..1120355 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 5.9e-40" FT misc_feature 1120107..1120169 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 1120632..1121597 FT /transl_table=11 FT /locus_tag="BB1039" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 1e-36, 39.29% id in 313 aa, and to FT Comamonas testosteroni OrfJ protein OrfJ SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 1.1e-31, 36.76% FT id in 321 aa" FT /protein_id="CAE31538.1" FT /translation="MVGKTGLGIAAILMAVSLGAARADGAYPSRPVKIVVPFPAGTATD FT TVTRILAGGLAQSLGQPVVVENRAGADGAIGAVEVARAEPDGYTLLMSTNGFCAVPSLR FT KNPPYHPIDDFSRISMVGRYSFFLYVNETVPARSLAELLDYGRAHPGKLNYATGNPTGI FT VATGQMLSLAKVDMMQVPYKGEPAGVADLVANRVQVMFATPTTAGQYVAQGKLHMLATT FT LPARSPAFPDVPTMAQAGVPKFSVSSWAALQGPARMPAQRVERLSQAVAQVLARADIQE FT QLARQNFLPASSTPAELQAFVEEQLVVYGETLREANVQPE" FT misc_feature 1120632..1120700 FT /note="Signal peptide predicted for BB1039 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.574 between residues 23 and 24" FT misc_feature 1120770..1121585 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.8e-69" FT CDS 1121629..1122837 FT /transl_table=11 FT /locus_tag="BB1040" FT /product="conserved hypothetical protein" FT /note="Similar to Acinetobacter sp. NCIMB9871 L-carnitine FT dehydrogenase-like protein Orf17 SWALL:Q93RL7 FT (EMBL:AB026669) (405 aa) fasta scores: E(): 2.9e-82, 53.13% FT id in 399 aa, and to Ralstonia solanacearum putative FT transmembrane protein rsc0796 or rs05041 SWALL:Q8Y194 FT (EMBL:AL646061) (420 aa) fasta scores: E(): 2.2e-84, 55.77% FT id in 398 aa" FT /protein_id="CAE31539.1" FT /translation="MVLDLTRILAGPWCTQILADFGARVIKVERPGVGDDTRSWGPPWM FT PGADGEQARHSTYFAAANRNKQSVSVDIATAEGQEIVRALAMRADVLIENFKVGDLARH FT GLDYASLSAVNPRLVYCSITGYGQTGPYADRPGYDLIFQGEGGLMSVTGERDDRPGGGP FT QKVGVAIADIVTGMYASSAVLAALQRRAATGAGQYIDIALLDCMAAFGANLAFNHVATG FT AVPPRYGNAHPTLVPYEVLAASDGHVIVAAGNDAQWRRFCAALGRPDLAADARYATGSG FT RIVHRDALMPEIARTFATEPAAHWLARLTEHGIPNGRINDYKQVFEHPQLLHRGMRVEM FT PDGEGNPVAGVANPVKFSASAVAYRHAAPALGQHTREVLCGLLRMDEARVQALAARGVL FT GAR" FT misc_feature 1121833..1122414 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 1.5e-69" FT CDS complement(1122842..1123732) FT /transl_table=11 FT /locus_tag="BB1041" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative LysR type FT regulator ra0164 or sma0303 SWALL:Q930N1 (EMBL:AE007210) FT (292 aa) fasta scores: E(): 3.4e-18, 31.35% id in 287 aa, FT and to Xanthomonas campestris transcriptional regulator FT TrpI or xcc2544 SWALL:AAM41816 (EMBL:AE012366) (298 aa) FT fasta scores: E(): 5e-17, 32% id in 300 aa" FT /protein_id="CAE31540.1" FT /translation="MKTANPPLVSLRAFVAVARHESFTQAAGTLGITQGAVSHHVATLE FT TYADCRLFDRRGSTVALTPAGLQLYEAVKDAMSTIELTMQLLVQRGHRHDRLKVRTSMP FT SFAMTLVVPHLGTYSAAHGVQVDLITSLAPPQPQDEFDVLISRDLSLPGTESWELAREE FT LICVGAPAVADAHREQSARHWPMVAARSRPDLIATWALVHDIAPDAINVVATYDHLFLA FT VTSAIGGTGFLVAPQLLVLDHLGAGTLVPSADPPIASGASYVAYVNAHSPHVQQARQFC FT RWLKNTLRNRGKAPA" FT misc_feature complement(1122866..1123465) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 0.00033" FT misc_feature complement(1123532..1123711) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.5e-20" FT misc_feature complement(1123577..1123669) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1123607..1123672) FT /note="Predicted helix-turn-helix motif with score FT 1539.000, SD 4.43 at aa 29-50, sequence FT ESFTQAAGTLGITQGAVSHHVA" FT CDS 1123857..1124840 FT /transl_table=11 FT /locus_tag="BB1042" FT /product="extracellular solute-binding protein" FT /note="Similar to Treponema hyodysenteriae FT periplasmic-iron-binding protein BitC SWALL:O54369 FT (EMBL:U75349) (339 aa) fasta scores: E(): 7.1e-28, 30.48% FT id in 328 aa, and to Agrobacterium tumefaciens ABC FT transporter, substrate binding protein atu4577 or agr_l_591 FT SWALL:Q8U777 (EMBL:AE009386) (387 aa) fasta scores: E(): FT 2.4e-26, 32.45% id in 302 aa" FT /protein_id="CAE31541.1" FT /translation="MPLALFRIFVFLMVLPACARVALAAEVVLYSSNNVETVNGVIDGF FT AKAHPDIKVSVVRAGTGALMQRIKAEAANPLGDIFWSGGLSTISEFRDMFAPYQSPEAA FT AVAPAFREASGLWLGTNTHVTVLMANLRQAPGGKAPQAWADLADPAWKGKIVIPDPERS FT SSSFVALYGLRELLGKEMLAKVARNAVIVGTTSAAYEGVAKGEFAVAVTMEYAGYEYVA FT GGLKEIRLVYPREGTFLSPEGMALIKGGKNPEAARKLYEYLASAPTQTEVFKSAYRRPL FT RGDIDVSKYADIPAMADIKIVELDSARMGSDRAAFIAEWRQLANAR" FT misc_feature 1123857..1123928 FT /note="Signal peptide predicted for BB1042 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 24 and 25" FT misc_feature 1123944..1124831 FT /note="HMMPfam hit to PF01547, DE Bacterial extracellular FT solute-binding protein, score 0.0013" FT CDS 1124868..1125932 FT /transl_table=11 FT /locus_tag="BB1043" FT /product="ATP-binding component of ABC transporter" FT /note="Similar to Agrobacterium tumefaciens ABC FT transporter, nucleotide binding/ATPase protein AfuC or FT atu4786 or agr_l_193 SWALL:Q8U6M1 (EMBL:AE009407) (353 aa) FT fasta scores: E(): 1.6e-45, 50.92% id in 324 aa, and to FT Rhizobium meliloti putative iron ABC transporter FT ATP-binding protein rb0349 or smb20363 SWALL:Q92WJ0 FT (EMBL:AL603643) (353 aa) fasta scores: E(): 2.9e-43, 49.68% FT id in 322 aa" FT /protein_id="CAE31542.1" FT /translation="MQVSFQAIHQRYGEQTLFENLDLTLPSGKFFTLLGPSGCGKTTLL FT RMLAGFIRPNDGRILFGDTDVTRIPVHRRDVGMVFQDYALFPDRSVLTNVCYGLAARNV FT PAPQARERAMAMLERVGLAAFAQRSPAQLSGGQRQRVAMARALVIEPRLLLLDEPLSAL FT DVKLRAELRGLIRGLQVEAGITTVFVTHDQEEALAMSDFIAVMDRGRVMQVGEPREIYT FT RPGSSFVADFVGSANLIPIERELASAPGEPRRLATGAGVVRTRSPIAWRAGALLAVRRE FT DLTLAEAACAEEGHFPGVVEHVEFRGSVTGYAVRTAAGLLRVEARVRPHEPSYARGQAV FT SVGIPLHSHIVDAS" FT misc_feature 1124949..1125494 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.4e-62" FT misc_feature 1124970..1124993 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1125264..1125308 FT /note="PS00211 ABC transporters family signature." FT CDS 1125929..1127587 FT /transl_table=11 FT /locus_tag="BB1044" FT /product="inner membrane component of ABC transporter" FT /note="Similar to Agrobacterium tumefaciens ABC FT transporter, membrane spanning protein atu4579 or agr_l_586 FT SWALL:Q8U775 (EMBL:AE009386) (561 aa) fasta scores: E(): FT 3.9e-57, 32.1% id in 542 aa, and to Fusobacterium nucleatum FT iron fn0377 SWALL:Q8RGC7 (EMBL:AE010549) (550 aa) fasta FT scores: E(): 1.3e-49, 27.58% id in 551 aa" FT /protein_id="CAE31543.1" FT /translation="MMLGTLRRDPAWLTVAVLAVGLLGVFLVWPLVSMLAKSFVAADGS FT VGLAGYIRFFSEPAYREVFVNTLILGVAVTATSMLVGGSLAVVVARCSFPLAGLVAALP FT LVTLVIPDVVVAASWVLILGRQGLLNGWLEPLGIQLPALYSWWGLVYVMTLNNYVYAFV FT AVLVGMKSMDRNLEEAALSLGRPEWQVLRGVTFPLLLPSVFAGALMVFTHVIGSFGVPA FT ILGARTPVLAVKAYNEFVSEMGGNPQMQTTMASLLVFLGAGMLLIQKLVVERRQFQMEA FT GRSPVARPVRGWRAMLATGSVFIVVALSLLPAVVVVVTAFTPSIGPVLRYGGFTLDHLR FT HALVRAPEPLYNSLFLASVATVAGVLFSVVSAYLIVKRRAALTHALDLLVMLPLTIAGT FT VLGIAMINSFNTGWLVLTGTWVIMALAYFLRRVPTSVRAAVGPLHNLRDSIEEASMSLG FT VGPIRSFFKVVLPVIMPAVVAAAVLMWVTTLSELSATVVLYFGGMNTMPIEIFQQVDSG FT RLALACAYSLVLLVTIFVPLAIARGIFKLKVGTIE" FT misc_feature 1125929..1126051 FT /note="Signal peptide predicted for BB1044 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.688) with cleavage site FT probability 0.559 between residues 41 and 42" FT misc_feature join(1125962..1126030,1126127..1126195,1126229..1126297, FT 1126355..1126423,1126505..1126573,1126676..1126744, FT 1126826..1126894,1126988..1127056,1127090..1127149, FT 1127162..1127215,1127321..1127389,1127402..1127461, FT 1127480..1127548) FT /note="13 probable transmembrane helices predicted for FT BB1044 by TMHMM2.0 at aa 12-34, 67-89, 101-123, 143-165, FT 193-215, 250-272, 300-322, 354-376, 388-407, 412-429, FT 465-487, 492-511 and 518-540" FT misc_feature 1126430..1126648 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 6.8e-13" FT misc_feature 1127252..1127473 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 4.5e-06" FT misc_feature 1127255..1127341 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1127584..1128810 FT /transl_table=11 FT /gene="aatB" FT /locus_tag="BB1045" FT /product="aspartate aminotransferase" FT /EC_number="2.6.1.1" FT /note="Similar to Rhizobium meliloti aspartate FT aminotransferase b AatB SWALL:AAB2_RHIME (SWALL:Q06191) FT (410 aa) fasta scores: E(): 5.4e-83, 54.14% id in 410 aa, FT and to Agrobacterium tumefaciens aspartate aminotransferase FT a AatA or atu2196 or agr_c_3991 SWALL:Q8UDD1 FT (EMBL:AE009170) (400 aa) fasta scores: E(): 1.2e-82, 55.44% FT id in 395 aa" FT /protein_id="CAE31544.1" FT /translation="MSSNEQTRRGFLADRVLGAKPSATKEMTRLANQLRQEGRDVIALS FT QGEPDFPTPEHVREAAKAAIDQGESRYTEVAGTLALREAVARKFERDNGLAYSPEQIQV FT GCGAKQILYNALQATINPGDEVVVPTPAWVSYPEMVLLAGGQPVIVRCGASSGFKLSPR FT QLEESITPRTKWLMLNSPSNPSGAVYSAEELAALAEVLARHPQVWVMADDIYEKIRYDD FT TPFATPAAIAPELAARTLTINGVSKAYAMTGWRVGFGAGPAALIKAMNLVQSQSTSHTS FT SISQAASIAALDGPMDFLPAFVAAFRRRRDSVVARLNAIEGLACDLPPGAFYAFPGCQA FT LLGRRDPSGTLVSTDLDFALYLLREAGVAIVPGSAFGLSGHFRVSYAASDEQLAQAMAR FT IAAACARLS" FT misc_feature 1127842..1128795 FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 8.7e-69" FT misc_feature 1128313..1128354 FT /note="PS00105 Aminotransferases class-I FT pyridoxal-phosphate attachment site." FT CDS 1128853..1129725 FT /transl_table=11 FT /gene="pepM" FT /locus_tag="BB1046" FT /product="phosphoenolpyruvate phosphomutase" FT /EC_number="5.4.2.9" FT /note="Similar to Tetrahymena pyriformis FT phosphoenolpyruvate phosphomutase precursor PepM FT SWALL:PEPM_TETPY (SWALL:P33182) (300 aa) fasta scores: E(): FT 3e-38, 41.81% id in 287 aa, and to Mytilus edulis FT phosphoenolpyruvate phosphomutase SWALL:PEPM_MYTED FT (SWALL:P56839) (295 aa) fasta scores: E(): 4.8e-37, 42.7% FT id in 288 aa" FT /protein_id="CAE31545.1" FT /translation="MTKNRSLRAALESGQLFTAMAAHNPLAARLAEEAGFGGIWGSGFE FT LSASYAVPDANILSMGTHLEMMRAIAATVSIPLIADIDTGFGNAVNVHYVVPQYEAAGA FT SAIVMEDKTFPKDTSLRAEGRQELVRIEEFQGKVAAAAAARKDPDFVVIARVEALIAGQ FT GQDEAIRRGLAYEEAGADAILIHSKQKTPDEILAFVAAWPGRKPLVLVPTAYPQLGERD FT IAALGKVGVVIYGNHAIRAAVGAMREVFAQIRRDQGIGQADRGLPTVKEIIALQGDARM FT REIEARYLK" FT CDS complement(1129741..1130712) FT /transl_table=11 FT /locus_tag="BB1047" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 4.8e-38, 39.29% id in 313 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 4e-30, 32.4% id FT in 324 aa" FT /protein_id="CAE31546.1" FT /translation="MKRVLRTLLAMALGACAATAAHAQADYPAKPVRVLVGYAPGGAAD FT LHARLIAEGLQKQLGQPFIVENRQGAAGVLAAQALKAQPADGYTLMVATSGAMAIPQNF FT QTLPYDPLTDFIPVAQAIANDLVMIVNNRSPAHNADEFVKLVKSENGHYSYGVSGHGSI FT THIAGERLKRELGIDMQVIPYRGDSMAFADTMGGSVPASLVAMPSVAQAVKAGQVRALF FT VTGSKRLAPFPDLPTLVELGHPDFVMSSWIALFAPAGTPAPVVRKLSDAVGRIMADPEL FT VKSLESTGARVEYRDQASFEKFFRQDVDNFARIIRDAKITAK" FT misc_feature complement(1129753..1130574) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.1e-78" FT misc_feature complement(1130644..1130712) FT /note="Signal peptide predicted for BB1047 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.917 between residues 23 and 24" FT CDS complement(1130759..1131679) FT /transl_table=11 FT /locus_tag="BB1048" FT /product="putative gluconolactonase" FT /EC_number="3.1.1.17" FT /note="Similar to Zymomonas mobilis gluconolactonase FT precursor Gnl SWALL:GNL_ZYMMO (SWALL:Q01578) (320 aa) fasta FT scores: E(): 0.0024, 29.85% id in 211 aa, and to FT Caulobacter crescentus gluconolactonase, putative cc2128 FT SWALL:Q9A6G6 (EMBL:AE005885) (303 aa) fasta scores: E(): FT 2.4e-47, 47.36% id in 304 aa" FT /protein_id="CAE31547.1" FT /translation="MRVVAEDLWFPEGPVWVGDGSLLVVEIRRKTLTRIFPDGRKHIVA FT ELGGGPNGAAMGPDGYCYVANNGGFAFRQREDGRWVTSGTPEDYRTGRIERVDIETGKV FT EVLYDRIDGRNIRGPNDLVIDAAGGIWFTDPGKTRHRDWDRGSICYATIDGSHIEEKVF FT PIHKPNGIGLSPDGRTLYVAETETARLWAWDLAGPGRLAAPAAASPASPHGSRLAYASP FT VYQRFDSLAVQADGAVAIGTLDRGGITTVRPDGSASFVPVAGDTHITNLCFGGEGMRKA FT YVTQSYAGRLVEIDWASPGLRLFEI" FT CDS complement(1131720..1132565) FT /transl_table=11 FT /locus_tag="BB1049" FT /product="putative aldolase" FT /note="Similar to Erwinia chrysanthemi AcsB SWALL:Q93AU1 FT (EMBL:AF416739) (258 aa) fasta scores: E(): 5.5e-19, 37.26% FT id in 212 aa, and to Ralstonia solanacearum probable FT aldolase protein rsp0423 or rs00880 SWALL:Q8XSP4 FT (EMBL:AL646078) (267 aa) fasta scores: E(): 2.8e-19, 39.13% FT id in 207 aa" FT /protein_id="CAE31548.1" FT /translation="MSTVPTPDAPAALDNPLMARLRGGGLGLSMIVKQVQSVDIAIAAH FT SAGYDAINIDLEHSVIPESAAAQICLMAQRMGVTPLVRVPTHDAHAINRILDAGAQGIV FT APHVESAEQARQVARAARFAPAGERSVSSSWPQLGYRKYPAATARKLLDDATTVIVMLE FT SPQAIEQADAIAAVPGVDILHVGTSDLCDALGIPGQFDHPRIAECVARVARACRRHGLV FT AGCGGLGNNPEVMESMLALGVRFLTGGNEWAFMMTEATRRARMLRALRLPADDGGRPAA FT " FT misc_feature complement(1131765..1132535) FT /note="HMMPfam hit to PF03328, DE HpcH/HpaI aldolase FT family, score 1.9e-20" FT CDS complement(1132562..1133563) FT /transl_table=11 FT /locus_tag="BB1050" FT /product="putative dehydrogenase" FT /note="Similar to Agrobacterium tumefaciens FT phosphoglycerate dehydrogenase SerA or atu5399 or FT agr_pat_578 SWALL:Q8UJS6 (EMBL:AE008961) (317 aa) fasta FT scores: E(): 2.2e-32, 41.33% id in 254 aa, and to Aeropyrum FT pernix 326aa long hypothetical formate dehydrogenase FT ape2507 SWALL:Q9Y8X7 (EMBL:AP000064) (326 aa) fasta scores: FT E(): 8e-30, 35.62% id in 320 aa" FT /protein_id="CAE31549.1" FT /translation="MSQPTTYTVAFMDVLAPAVQRVILSVFRPPFEVRFAANYDDRHQL FT ALCREADFLVPGWARLTAGMLEAATRVRAVHKWGIGVDRIDVDAARRLGIPLAITAGSN FT AGPVAELAVALILGVYRRLCYVNREMRAGQWPKAEMRESCFQIHRKTIGLVGFGNIGRK FT LARRLSGFEPDAILYCDQQAAPAEVERALGARRVELPELLAASDIVSLHLPCTASTRRL FT IDAAALQHMKKGAVLINTARGELVDEAALAEALQRGHLLGAGLDAFDPEPPDPANPLLA FT LDQVVVTPHAGGGVFDNVAPVAAHVLGNLERFVAGQPLPAQDLIVSEDRRKP" FT misc_feature complement(1132694..1133254) FT /note="HMMPfam hit to PF02826, DE D-isomer specific FT 2-hydroxyacid dehydrogenase, NAD binding domain, score FT 4.6e-63" FT misc_feature complement(1132823..1132873) FT /note="PS00671 D-isomer specific 2-hydroxyacid FT dehydrogenases signature 3." FT misc_feature complement(1132892..1132960) FT /note="PS00670 D-isomer specific 2-hydroxyacid FT dehydrogenases signature 2." FT misc_feature complement(1133258..1133530) FT /note="HMMPfam hit to PF00389, DE D-isomer specific FT 2-hydroxyacid dehydrogenase, catalytic domain, score 1e-08" FT CDS complement(join(1133563..1133874,1133874..1135232)) FT /pseudo FT /transl_table=11 FT /locus_tag="BB1051" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta FT scores: E(): 2e-44, 35.52% id in 594 aa, and to FT Mycobacterium tuberculosis hypothetical protein rv0976c FT rv0976c or mtv044.04c or mt1003.1 SWALL:O86320 FT (EMBL:Z79700) (560 aa) fasta scores: E(): 2.7e-22, 31.77% FT id in 579 aa" FT misc_feature complement(1133605..1133628) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1134765..1134800) FT /note="PS00962 Ribosomal protein S2 signature 1." FT CDS complement(1135229..1136098) FT /transl_table=11 FT /locus_tag="BB1053" FT /product="putative dioxygenase" FT /EC_number="1.14.11.17" FT /note="Similar to Escherichia coli FT alpha-ketoglutarate-dependent taurine dioxygenase TauD or FT SsiD or b0368 SWALL:TAUD_ECOLI (SWALL:P37610) (282 aa) FT fasta scores: E(): 5.9e-21, 32.5% id in 283 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa2310 pa2310 FT SWALL:Q9I1G5 (EMBL:AE004657) (295 aa) fasta scores: E(): FT 3.5e-30, 38.72% id in 297 aa" FT /protein_id="CAE31551.1" FT /translation="MNTPNPARLQTRPLTQHGLGIEVRGVDLGAELPAQVARTLRALWS FT EHAVLVVRDQRLDPPGFLRAAGVFGEILPQQLGKFSLPDYPLVGTISSRDLPIRDGKLH FT VRGENYHTDHSNFREPPMGTMLHAIELPSHGGDTQFVDVRAAYDDLPEQTKARIASLRS FT DHVYESSRSPRKMAALTPQQRAEAASSSQPLVIVHPVSGRPALYLNTGRMEGVDGLPED FT EGFALINMLYEHATQPRYEYRHQWRKGDFVLWDNRSVMHQANADFDPQELRFLYRLMLK FT GDALEGLQ" FT misc_feature complement(1135235..1135954) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02668, DE Taurine catabolism FT dioxygenase TauD, TfdA family, score 1.8e-11" FT CDS 1136220..1137188 FT /transl_table=11 FT /locus_tag="BB1054" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT activator protein LysR or b2839 SWALL:LYSR_ECOLI FT (SWALL:P03030) (311 aa) fasta scores: E(): 2.3e-21, 33.21% FT id in 289 aa, and to Rhizobium loti transcriptional FT regulator mlr7023 SWALL:Q987J8 (EMBL:AP003010) (301 aa) FT fasta scores: E(): 4.8e-22, 32.74% id in 281 aa" FT /protein_id="CAE31552.1" FT /translation="MNLRHIEVFYAIMQAGSVTGAAHLLNVTQPAVSNVLRHAEQQLGL FT KLFERIAGRLQPTPEAYDLFPDVQEIFGRIGTLNRLVEEMRGGRAGRLAIAASPTLVNV FT YLARAIARLKAHGGGTQVTIQSLPTVIAIERVERREVDIGLVYGPVTDPGVIVEDLAGS FT DVVCALHRAAPLARRKTLGPDDLASVAVVSTGRTTRIGVAVKQACEAQGLSVPEVSVEV FT NSSLAACLMAAEHVGVGLVDLAAVNQYALPDVVFRPFRPRVELRLCLIYPKDRPRSRAT FT LRFTAALRELFGQGAPEQPQAAGRGARAARAPRAGQGGPGR" FT misc_feature 1136226..1136405 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 8.2e-17" FT misc_feature 1136265..1136330 FT /note="Predicted helix-turn-helix motif with score FT 1621.000, SD 4.71 at aa 16-37, sequence FT GSVTGAAHLLNVTQPAVSNVLR" FT misc_feature 1136475..1137098 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 4.6e-39" FT CDS 1137334..1138629 FT /transl_table=11 FT /gene="metY" FT /locus_tag="BB1055" FT /product="O-acetylhomoserine sulfhydrylase" FT /EC_number="2.5.1.49" FT /note="Similar to Leptospira meyeri O-acetylhomoserine FT sulfhydrylase MetY SWALL:P94890 (EMBL:Y10744) (442 aa) FT fasta scores: E(): 4.1e-86, 55.58% id in 439 aa, and to FT Xanthomonas campestris homocysteine synthase pa5025 MetB or FT xcc3068 SWALL:AAM42339 (EMBL:AE012421) (428 aa) fasta FT scores: E(): 7.5e-129, 80.33% id in 422 aa" FT /protein_id="CAE31553.1" FT /translation="MSEPKQPSWRLETIAVHGGYRPDPTTRAVAVPIYQTVAYAFDDTQ FT HGADLFDLKVPGNIYTRIMNPTTDVLEQRVAALEGGVAALALASGQAAVTYAILTIAEA FT GDNIVSSSTLYGGTYNLFAHTLPQYGITTRFADPRNLASFEALIDERTKAIFAESVGNP FT LGNVTDIAALAEIAHRHGVPLIVDNTVPSPYLLRPIEHGADIVVQSLTKYLGGHGTSLG FT GAIIDSGKFPWAEHKARFKRLNEPDVSYHGVVYTEAFGAAAYIGRARVVPLRNTGAAIS FT PFNAFQILQGIETLALRVDRIVENSVKVAGFLRDHPKVEWVNYAGLPDHADHALVRKYM FT GGKAPGLFTFGVKGGREAGARFQDALQLFTRLVNIGDAKSLATHPASTTHRQLNPEELE FT KAGVREETVRLSIGIEHIDDLIADLEQALAQV" FT misc_feature 1137367..1138620 FT /note="HMMPfam hit to PF01053, DE Cys/Met metabolism FT PLP-dependent enzyme, score 3.7e-212" FT CDS complement(1138677..1139201) FT /transl_table=11 FT /locus_tag="BB1056" FT /product="conserved hypothetical protein" FT /note="Similar to Legionella pneumophila Mip SWALL:Q53427 FT (EMBL:S71704) (184 aa) fasta scores: E(): 2.6e-06, 30.33% FT id in 178 aa, and to Pseudomonas aeruginosa hypothetical FT protein Pa0269 SWALL:Q9I6M1 (EMBL:AE004465) (145 aa) fasta FT scores: E(): 1.8e-07, 33.82% id in 136 aa" FT /protein_id="CAE31554.1" FT /translation="MARIPYADLGSEQARPLVERIVAERGSVLHLYQMLLHSPPIAEGW FT LNYLTAVRQKASLSGALRELVIVRVAQINGAPYEADQHIPIALKEGVSQAQIDDLADWE FT ASSRFSDKERRVLALTEQMTRQVHVDKPLMAQLGEDFSHQELVELVATVAAYNMVSRFL FT EAFGIHSDDPR" FT CDS complement(1139302..1140096) FT /transl_table=11 FT /locus_tag="BB1057" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT rb1005 or smb21565 SWALL:Q92UT2 (EMBL:AL603645) (248 aa) FT fasta scores: E(): 2.5e-83, 80.32% id in 244 aa, and to FT Rhizobium loti hypothetical protein Mlr1911 SWALL:Q98JJ9 FT (EMBL:AP002998) (249 aa) fasta scores: E(): 3.1e-78, 74.69% FT id in 245 aa" FT /protein_id="CAE31555.1" FT /translation="MTRPAGTSTSPPSPPAMDTPPVVSAQEWEAARERLLAREKAHTRA FT RDALAAERRRMPWMAVRESYAFEGPQGPASLLDLFEGRRQLIVYRAFYEPGVYGWPDHA FT CRGCSMVADQVAHLAHLNARDTTLAFASRAPQADIARLKARMGWDMPWYTITDGFDADF FT GVHEWHGTNVFIREGARLFRTYFVNNRGDEQMGGTWNYLDITPLGRQEDWEDSPAGYPQ FT TPPYKWWNWHDSYVAGAPPDREWVRVSQASDEALRQDGKARP" FT CDS complement(1140221..1140880) FT /transl_table=11 FT /locus_tag="BB1058" FT /product="GntR-family transcriptional regulator" FT /note="Similar to Rhizobium loti transcriptional regulator FT mll7060 SWALL:Q987G6 (EMBL:AP003010) (230 aa) fasta scores: FT E(): 1.7e-20, 37.11% id in 194 aa, and to Acinetobacter FT calcoaceticus transcriptional repressor MdcY SWALL:Q9F0Q8 FT (EMBL:AF209728) (224 aa) fasta scores: E(): 7.2e-18, 32.82% FT id in 195 aa" FT /protein_id="CAE31556.1" FT /translation="MKVSDRIRIDIERQLQDGTLLPGDPVDDGKLAAQHNVSRTPVREA FT LLQLQAQGLLTSLPRGGMVVAKMDVQQLLSMWELLAELESLCARYACERMTDEERAVLR FT QLHEEAAPIVETNDEVGWQEMNLAFHEALYKGSRNPYLRQEILRMRTQTGAYRRHAFGA FT VGRIPTSYGHHQLVLDAVLANQPAQAAKAMFEHMSPGHGTRGVADMIVNMPRSLLS" FT misc_feature complement(1140686..1140874) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.5e-12" FT CDS 1141076..1142263 FT /transl_table=11 FT /locus_tag="BB1059" FT /product="conserved hypothetical protein" FT /note="Similar to Agrobacterium tumefaciens L-carnitine FT dehydratase CaiB or atu2127 or agr_c_3858 SWALL:Q8UDJ8 FT (EMBL:AE009163) (419 aa) fasta scores: E(): 1.3e-50, 40.31% FT id in 382 aa, and to Thermoplasma volcanium L-carnitine FT dehydratase tv1186 or tvg1215416 SWALL:Q979H5 FT (EMBL:AP000995) (399 aa) fasta scores: E(): 4.5e-48, 34.27% FT id in 388 aa" FT /protein_id="CAE31557.1" FT /translation="MSGSKPLSQIRVLDLSRVRAGPACVRMLADFGADVIRIEPPRGVD FT PNEAMFAADRMSGDFQNLNRNKRSLTLNLKYPQGREILYKLVETADVVVENWRPDVKAR FT LGLDYETLRGINPRIILASISGYGQSGPYARRPGFDQIIQGLSGLMSITGEPGGKPMRA FT GLAVADVGAGMYAAMGILMAVIERQRSGQGQWVQASLLHSLIAMLDFQVARYLNEGDVP FT VAVGNDHPTSSPMGLYQASDGPFNLGSSGEGTWQRLCRILGREDLVEVPEYGSEKLRVR FT NRAMLNDVLAPIFARHDVQHWVGVLNEGGVPAGPVYTIPQVIADEQVRHLNVAVTVPTS FT VDQDVTVITQPVVLSRTPAEVTAGAPQWGEHSEAILAELGYQPADLERLRAQGVF" FT misc_feature 1141283..1141849 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 2.7e-66" FT CDS 1142343..1143347 FT /transl_table=11 FT /locus_tag="BB1060" FT /product="probable extracellular solute-binding protein" FT /note="Similar to Pseudomonas stutzeri probable c4 FT dicarboxylate binding protein DctP SWALL:Q93JT7 FT (EMBL:AJ313422) (331 aa) fasta scores: E(): 3.9e-26, 32.68% FT id in 309 aa, and to Rhodobacter capsulatus FT c4-dicarboxylate-binding periplasmic protein precursor DctP FT SWALL:DCTP_RHOCA (SWALL:P37735) (333 aa) fasta scores: E(): FT 6.8e-26, 31.83% id in 333 aa" FT /protein_id="CAE31558.1" FT /translation="MKYWKILCAAALACELVALPGLAAAADPVVLKFSHEAPETQAKGR FT AANYFAEKVAQLSGGSLKIEVFPSAQLIPTKDEVRAAMRGQVDIIAPQTSYFIPIDNSW FT DVFYMPMLFDNAQQGMRIVQGELGREMLAGLKRNRLHGLGIWHDGPGYVFVRGKPVEKP FT ADLAGKKIRIFPSAPLEAGIRAANGIPVSLPAPDVYVSLQQGLIEGVVSAITFAAPSRW FT YEVVKGGTRMTLFVGGYGVVVNDRRWESLSEEHRKVLEEAMRLTEKWNYDHTVENIAQS FT EKLMTDNGVTFADPTPQELAQWREVMKPVYQNQPENIRQRIEQVEKLKAAMAK" FT misc_feature 1142343..1142417 FT /note="Signal peptide predicted for BB1060 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.853 between residues 25 and 26" FT misc_feature 1142439..1143296 FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 7.7e-65" FT CDS 1143370..1143897 FT /transl_table=11 FT /locus_tag="BB1061" FT /product="putative integral membrane transport protein" FT /note="Similar to Wolinella succinogenes small integral FT C4-dicarboxylate membrane transport protein, putative dctQ FT SWALL:Q9ZEJ3 (EMBL:AJ132740) (170 aa) fasta scores: E(): FT 7.2e-09, 27.27% id in 165 aa, and to Bacillus halodurans FT C4-dicarboxylate transport system bh2672 SWALL:Q9K9H5 FT (EMBL:AP001516) (183 aa) fasta scores: E(): 2.2e-08, 29.57% FT id in 142 aa" FT /protein_id="CAE31559.1" FT /translation="MLTLLRRLGQAWDTVELMVGGVFLTLSVILIVAEIAGRNLFGVSM FT VGADEIASYMVIWSVFFTASIAAKKNMHIRIDVIFTLASPAVGRMLDIFGSLMSAAFAA FT YLTYSGMVLVHDSWIFGETTMTMLRLPLWVPQLIMPIGGFLLTVRLVQRVVHLLKTPAS FT ALVSEAVHSPTA" FT misc_feature join(1143418..1143477,1143520..1143573,1143646..1143714, FT 1143757..1143825) FT /note="4 probable transmembrane helices predicted for FT BB1061 by TMHMM2.0 at aa 17-36, 51-68, 93-115 and 130-152" FT CDS 1143919..1145175 FT /transl_table=11 FT /locus_tag="BB1062" FT /product="putative membrane protein" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm0273 SWALL:Q9CNZ7 (EMBL:AE006062) (427 aa) fasta FT scores: E(): 2.8e-54, 40.09% id in 414 aa, and to FT Pseudomonas stutzeri probable c4-dicarboxylate transporter FT DctM SWALL:Q93JT5 (EMBL:AJ313422) (426 aa) fasta scores: FT E(): 2.1e-51, 40.53% id in 412 aa" FT /protein_id="CAE31560.1" FT /translation="MFATFSTLFAALVGGMPVAFALGACGLAYLLTQNAAADALASQLF FT GSLNSSGLLAIPFFILAAEILSRTGATMRLIHLIDTFLRHTRGGLLAIAVIATAMFSSI FT CGSSVATAAAIGTVMIPEMVKRGYDRTLCVGLIASAGGLGILLPPSVPLVVYGMVTESS FT IAGLFAAGAAVGIVLTICLVIVAYIFGCKSGVAPQPKATAAERWKAFKAALGVLMSPVI FT VLGGIYSGIFTPMEAAAVSCVYALALALFYGQTARKLLAVLTDAATTSSLIMLILAGAQ FT LFGYAMTNERVPHAMFDFVSSMDLSKAGFYIGVMLFFLVIGMFLEVISVILITMPILLP FT MLAGFDINPIFFGIFVILNMEIAVITPPIGLNLFAISAISEVPVMRVFRGCVPFVLLLF FT AFMVAMVFIPGVPELFDYF" FT misc_feature 1143919..1143981 FT /note="Signal peptide predicted for BB1062 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.506 between residues 21 and 22" FT misc_feature join(1143946..1144014,1144048..1144116,1144180..1144248, FT 1144309..1144377,1144420..1144488,1144546..1144614, FT 1144624..1144677,1144714..1144782,1144840..1144908, FT 1144927..1144995,1145005..1145073,1145092..1145151) FT /note="12 probable transmembrane helices predicted for FT BB1062 by TMHMM2.0 at aa 10-32, 44-66, 88-110, 131-153, FT 168-190, 210-232, 236-253, 266-288, 308-330, 337-359, FT 363-385 and 392-411" FT misc_feature 1144303..1144770 FT /note="HMMPfam hit to PF00597, DE DedA family, score FT 4.6e-19" FT CDS 1145178..1145978 FT /transl_table=11 FT /locus_tag="BB1063" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical FT protein sco2750 or scc57a.21C SWALL:Q9RDH7 (EMBL:AL136519) FT (287 aa) fasta scores: E(): 1.8e-10, 28.67% id in 265 aa, FT and to Agrobacterium tumefaciens hypothetical protein FT atu3118 or agr_l_3383 SWALL:Q8UB98 (EMBL:AE009242) (273 aa) FT fasta scores: E(): 1e-08, 31.42% id in 245 aa" FT /protein_id="CAE31561.1" FT /translation="MQTDRPPLYAVNHYLCPADTPLPVFAARVAQAGFGGIGLTAAALD FT EMPLPAIASLLDGLGLRVSSINTAGFFRGGAADQAGRNLRLLEAAAALDAAALNVIVGA FT DDESVPLQQARQAVAQALQGFGAQARAAGVRLAIEPLNLSNVFSKSCVNTIAQVEALRD FT AFGEATINVDYFHLWADPDLPRLLDGQGVPIGLTQWCDVTWTGHPGQARRAPLGAGRLS FT ADGYLDGLAVGCPVELELFIDQLPGMDYARIIDDSARHLGLKGE" FT CDS 1145984..1146877 FT /transl_table=11 FT /locus_tag="BB1064" FT /product="putative hydrolase" FT /note="Similar to Ralstonia metallidurans esterase estA FT SWALL:Q9RBF3 (EMBL:AJ251831) (275 aa) fasta scores: E(): FT 4.7e-14, 29.03% id in 279 aa, and to Pseudomonas sp. FT 3-oxoadipate enol-lactone hydrolase catD SWALL:Q8VPF0 FT (EMBL:AY044272) (262 aa) fasta scores: E(): 4.1e-13, 31.52% FT id in 276 aa" FT /protein_id="CAE31562.1" FT /translation="MATAIASDGVRLHYETTGAGTPIVFVHEFAGNLRSWEPQVRHFAR FT QYQCIRFNARGYPPSEVPESVSAYSQAQAVRDIVAVMDAVGAAKAHVVGLSMGGFAALH FT LGLTHPERALSLCVAGAGYGAEPGRRDLFRQESETSARLLLELGMPAFAERYTQGPTRM FT PFLRADPLGFAEFVALMKTHSALGSANTQLGVQRERPSLYELEEQLGRLTVPTLILNGD FT EDWPCLAPGLMLKRVIPSAALSVIPNCGHTINLEASEAFNRVLGDFMAQAASGRWPQRD FT PRAMADTITGMSGGKS" FT misc_feature 1146122..1146790 FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 6e-20" FT CDS 1146874..1147881 FT /transl_table=11 FT /locus_tag="BB1065" FT /product="putative NAD dependent epimerase/dehydratase" FT /note="Similar to Micromonospora echinospora CalS9 FT SWALL:AAM70333 (EMBL:AF497482) (329 aa) fasta scores: E(): FT 9.8e-13, 40.65% id in 182 aa, and to Streptomyces griseus FT TDP-glucose-4,6-dehydratase homolog GrsE SWALL:Q9X5W0 FT (EMBL:AF128273) (324 aa) fasta scores: E(): 1.3e-12, 28.09% FT id in 331 aa" FT /protein_id="CAE31563.1" FT /translation="MNILVTGGAGFVGLNIVERLLKAGMSVVSYGSEAPPPQVMDYLGA FT LGGRFEAVQGDVRDGARLRAVFAQHGITDVVHGAAITAGLERERAQPHAVIEVNLLGTL FT EVLAAAASCGIRRVVQLGTGSVYGARCRTDGLLDPDQDPPVPDSLYGVTKYAAERLACR FT YRAQHGLDVVVARLGVVFGRWEHDTGVRDTLSIPYQILGQARAGGTAALARQLPDDWVY FT APDVAQAVHKLLLARELGRPVYQIGTGGRWSAQQWCELVRARFPGFEYRFVDTPEQVNV FT GRQTPTPRAPFSIAALRDEVGYRPEYDAAAALDDYLAWLALGLYATGRNPAQQG" FT misc_feature 1146880..1147842 FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 1.8e-13" FT misc_feature 1147282..1147368 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 1147878..1148783 FT /transl_table=11 FT /locus_tag="BB1066" FT /product="putative membrane protein" FT /note="Similar to Rhizobium loti hypothetical protein FT Mll1137 SWALL:Q98L83 (EMBL:AP002996) (291 aa) fasta scores: FT E(): 4.5e-36, 41.55% id in 296 aa, and to Rhizobium FT meliloti hypothetical protein transmembrane rb0043 or FT smb20040 SWALL:Q92XB9 (EMBL:AL603642) (286 aa) fasta FT scores: E(): 5.1e-36, 42.1% id in 285 aa" FT /protein_id="CAE31564.1" FT /translation="MTDMNPAGSKAGGESGGLLMGLVAVAIFAMSLPMTRLAVGDTSAP FT QLSPVFVTCARAALAGLLSILYLLAIRSPLPPRRVRMSLFASGMGTVVGFPLFLALALR FT YVDAMQAAVFTGVLPLATAVFGAILFRQRPSAAFWLCAVAGCALVLAFALYRGNGQVGY FT GDLMLLAAVIVGAIGYVTGAKASAAMSAGEVISWILAVTFLPMLAVSLAYWPADTVSWQ FT AWGGVGYLGVFPMWIGFFIWYRAMTVGGAVRVSQVQLLQPFLALLFAVPIVGESLDGLT FT IAFSLAIIAIVYLGKRARVN" FT misc_feature join(1147911..1147979,1148022..1148090,1148127..1148186, FT 1148199..1148267,1148286..1148342,1148355..1148423, FT 1148457..1148525,1148538..1148606,1148625..1148693, FT 1148703..1148762) FT /note="10 probable transmembrane helices predicted for FT BB1066 by TMHMM2.0 at aa 12-34, 49-71, 84-103, 108-130, FT 137-155, 160-182, 194-216, 221-243, 250-272 and 276-295" FT misc_feature 1147953..1148339 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 2.2e-11" FT misc_feature 1148283..1148315 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 1148394..1148768 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 1.9e-14" FT CDS complement(1148830..1149807) FT /transl_table=11 FT /locus_tag="BB1067" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 9.6e-34, 35.86% id in 329 aa, and to Comamonas testosteroni FT Orf4 protein SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta FT scores: E(): 4e-31, 34.92% id in 315 aa" FT /protein_id="CAE31565.1" FT /translation="MTRRKTMIRFARIAPLLAGAALALAGGPAAAYPDRTVRIVVPFPP FT GTVTDLMARKYAEELSRQLRQTFVVENKPGAGGTVAAQHVLNSQADGYTVLFVSSAHAA FT APALNPRLPYDTVKDFSGVALLGSTPTLVVTNPAAGIGTLDALLKQAKTRELTYGSAGI FT GSAAHLACEYFAAAAGIKPLHIPYKGSNEYVAEVRAGRIDFACPPVATPLPLLRAGELA FT GAAIMDAARSDLIPDTPTTGQAGLPGVEYGIWYGVLMRRGAPAPAVSALSAAIRKVNEQ FT GDIAAPLRAQGVSLKYLPPAEFDDYIRQEVDKFQGIATRAGITE" FT misc_feature complement(1148839..1149654) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 7.5e-71" FT misc_feature complement(1149715..1149807) FT /note="Signal peptide predicted for BB1067 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.979 between residues 31 and 32" FT CDS complement(1149804..1151285) FT /transl_table=11 FT /locus_tag="BB1068" FT /product="probable aldehyde dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable aldehyde FT dehydrogenase pa3504 SWALL:Q9HYA5 (EMBL:AE004771) (494 aa) FT fasta scores: E(): 4e-65, 44.58% id in 471 aa, and to FT Rhizobium loti aldehyde dehydrogenase mll2319 SWALL:Q98IP1 FT (EMBL:AP002999) (498 aa) fasta scores: E(): 5.7e-63, 46.45% FT id in 480 aa" FT /protein_id="CAE31566.1" FT /translation="MQDSQDNGQSGLAAMWIGGRETLAQDGQTIEIANPATRQPLARVP FT RGRQAEVDLAVAAASQAYAGWRACSPRERADALLRIADSLAAESEALARLLATETGNAL FT RTAARPEAQGAAGIFRYYAGVAGEAKGETVPGAEGTLAYSVREPLGVVAAIIPWNSPVA FT AAAVKIASAIAVGNTIVVKTAEDAPLSALKLAALCNAALPAGVVNCLTGYGSECGAALA FT MHPGVRKISFTGSTETGKAIMRAAADRIVPVSLELGGKSPSIVYPSANCDWAVDGVMTA FT MRFTRQSQSCTAGSRLFVHRDIYDDFLRKLAGRLDRLVVGDPLDEATDMGALINQRQHA FT KVNDYIACGLAEPSARLLAGGPSPGEGRLAQGYFALPTLIAGVDNGWRVAREEIFGPVL FT VAIPWSDERQVLEMANDTHYGLAAYVWTTDLGEAMRGASALDAGWIQVNRGHAPGVGVS FT FGGVKNSGFGREFSLEGMLDSFTQRKSVTLDFSHA" FT misc_feature complement(1149816..1151216) FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 2e-172" FT misc_feature complement(1150500..1150523) FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT CDS 1151394..1153004 FT /transl_table=11 FT /locus_tag="BB1069" FT /product="putative dehydrogenase" FT /note="Similar to Rhizobium loti alcohol dehydrogenase FT mlr2604 SWALL:Q98I22 (EMBL:AP003000) (538 aa) fasta scores: FT E(): 3.2e-71, 39.51% id in 534 aa, and to Agrobacterium FT tumefaciens oxidoreductase, gmc family atu6063 or FT agr_pti_129 SWALL:Q8U672 (EMBL:AE009425) (541 aa) fasta FT scores: E(): 4.9e-71, 41.5% id in 530 aa" FT /protein_id="CAE31567.1" FT /translation="MEKKRVFDYIVVGGGSAGCVIASRLSEESGRSVLLLEAGGSDRRL FT WARIPLGVGKLVNDPSCLWEAEAGPEPLLGGRAVRWTSGRIMGGGSSVNGMLAVRGNPS FT RYDDWAGLGCPGMGYEDMLPYFRKLETCMFPASGERGTQGPIGISRIAPEPVGAAFVQA FT CQASGLDLLDDFNSDFRAGATYMQASIRNGRRASASRGYIDPVRGRGNLVIEENAVVHR FT VLFEGLRATGVEVEIGGQLARIRADAEVILCAGAIRSPQLLELSGIGQPGILARHGVAP FT VLALPGVGENLQDHYMVRVCLRSAVPRTIFDFLRSPWYQARELAKYVLARRGMFACGSL FT TAMAFVKSRFATSHPDVRIQLGLSSGAQRVSKNEGSGLDPFSAFHIGGYFIHPHSRGAL FT HIQSRDPRQAPRISANYLQAERDRQVTVDIVRTIRDIAARAPLSELVREEIRPGPALDT FT DEQLLRYARETGDTCWHPLGTCRMGTDGMSVVDPAFRVHGLQGLRVADASVAPFQVSSN FT TNIPTIAVAERAAALIRAA" FT misc_feature 1151412..1152980 FT /note="HMMPfam hit to PF00732, DE GMC oxidoreductase, score FT 2.2e-145" FT misc_feature 1151418..1151450 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 1152156..1152200 FT /note="PS00624 GMC oxidoreductases signature 2." FT CDS 1153037..1153834 FT /transl_table=11 FT /locus_tag="BB1070" FT /product="conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical protein FT Ypo3647 SWALL:Q8ZAY5 (EMBL:AJ414158) (275 aa) fasta scores: FT E(): 3.2e-49, 48.48% id in 264 aa, and to Rhizobium etli FT hypothetical protein yp053 SWALL:AAM54941 (EMBL:U80928) FT (169 aa) fasta scores: E(): 3.3e-27, 47.5% id in 160 aa" FT /protein_id="CAE31568.1" FT /translation="MNDNYEVFAIKYATYQQRRRNENFLPADEHDAGLMPLDYYVWLLK FT SPARTILVDTGFNPPEAAARNREQSRCPIEALRLLDVAPDDIDDVIITHLHYDHAGNLE FT KIPRARFHIQDKEVEFATGRCMCHAPLRFAYSPADVSNFIHKLYAGRVVFHDGAGVVAP FT GVEVLHVGGHTKGLQAVRVMTQRGWVVLASDASHFYENLEAARPFPLVADVAEMLDGFE FT RLVRAAGSPSHVVPGHDPAVMTRYPTHPRDPQGIALLHLPTLA" FT misc_feature 1153136..1153750 FT /note="HMMPfam hit to PF00753, DE Metallo-beta-lactamase FT superfamily, score 2.6e-09" FT CDS 1153989..1154810 FT /transl_table=11 FT /locus_tag="BB1071" FT /product="putative permease component of ABC transporter" FT /note="Similar to Bacillus subtilis putative aliphatic FT sulfonates transport permease protein SsuC SWALL:SSUC_BACSU FT (SWALL:P40401) (276 aa) fasta scores: E(): 3.2e-39, 42.3% FT id in 260 aa, and to Agrobacterium tumefaciens ABC FT transporter, membrane spanning protein SsuC or atu6057 or FT agr_pti_116 SWALL:Q8U678 (EMBL:AE009424) (313 aa) fasta FT scores: E(): 5.3e-54, 58.26% id in 242 aa" FT /protein_id="CAE31569.1" FT /translation="MSNATSPGAAAPRAARQRAQGLALGWWKYLVPLALLAVWQLAATL FT GWVDEYILPAPTVVFTTFIDLLASGELLRDVGISALRVAQGFALAAVAGLGLGLAMGLS FT KKFNAASDFLLKILKPIPPIAWIPLAILWLGLGEAAKVFIIFIGAVFPILFNTLDAIRQ FT TDGRYVDLARVLELKRGAFVQKIILPGALPQIMTGLRIGITIAWMCVVAAELIAASSGV FT GYLIMQARALAQSDVVIVGMLVTGLLGKLTDDALRLVERSLVKWRQDFPGA" FT misc_feature join(1154049..1154111,1154139..1154207,1154244..1154297, FT 1154325..1154393,1154412..1154471,1154595..1154663) FT /note="6 probable transmembrane helices predicted for FT BB1071 by TMHMM2.0 at aa 21-41, 51-73, 86-103, 113-135, FT 142-161 and 203-225" FT misc_feature 1154466..1154696 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 0.0049" FT CDS 1154823..1155575 FT /transl_table=11 FT /locus_tag="BB1072" FT /product="ATP-binding component of ABC transporter" FT /note="Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 FT (EMBL:AF126201) (287 aa) fasta scores: E(): 4.9e-39, 51.02% FT id in 243 aa, and to Agrobacterium tumefaciens ABC FT transporter, nucleotide binding/ATPase protein SsuB or FT atu6058 or agr_pti_117 SWALL:Q8U677 (EMBL:AE009424) (267 FT aa) fasta scores: E(): 1.6e-44, 56.91% id in 246 aa" FT /protein_id="CAE31570.1" FT /translation="MTSPCIRARGISKTYPGREGRPVQALANVSIEVGTAEVLAILGAS FT GCGKSTLLRIMAGLDQDYTGEMVVHGKPVTGPGLDRGFVFQDHRLVPWMTVRENIGLGL FT HRLDGAARARAIEDKLRLVGLTRFIDAYPAQLSGGMAQRVAIARALAYAPDVLLLDEPF FT GALDALTRVAMQAEVLRIQQQEKLSCVLVTHDIEEAIFLADRILVLSSSPGAVEAVIDV FT DMPKPRSRGAAAFTALREHIYDTHFATH" FT misc_feature 1154928..1155458 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2e-59" FT misc_feature 1154949..1154972 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1155228..1155272 FT /note="PS00211 ABC transporters family signature." FT CDS 1155618..1156571 FT /transl_table=11 FT /locus_tag="BB1073" FT /product="putative substrate binding component of ABC FT transporter" FT /note="Similar to Bacillus subtilis putative aliphatic FT sulfonates binding protein precursor SsuA SWALL:SSUA_BACSU FT (SWALL:P40400) (332 aa) fasta scores: E(): 9.8e-19, 28.57% FT id in 301 aa, and to Agrobacterium tumefaciens ABC FT transporter, substrate binding protein ssua or atu6059 or FT agr_pti_119 SWALL:Q8U676 (EMBL:AE009424) (320 aa) fasta FT scores: E(): 1.1e-37, 36.62% id in 314 aa" FT /protein_id="CAE31571.1" FT /translation="MSTFIHRMACLLALLALVAGRNAWADDIRIGFMPYLPYTNVLYAK FT QKGLIEEELKQAGIDKGVTWRQFSAGGLVSEGMAAKELDLGILGVVPATIGRSAGQDSR FT IVALGSTAPRSHALVVRADLAIADVAGLKGKRVATTYGSTVYELLYRILDEAGMTVKDV FT ELVNMQPADMNVSLRNKSIDAAVIWDPLLPRLRADGVVRELRNGTGINDNINVIVARGP FT YIEQQPEAVRAVLRGIARANEAIKADPGAAGALFAATFDLPDTVARDAVGNYAFSLRMP FT QAVQAQMKQSAAFLKDERIIRRPVDVDAFLDLALID" FT misc_feature 1155618..1155692 FT /note="Signal peptide predicted for BB1073 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 25 and 26" FT CDS complement(1156592..1157278) FT /transl_table=11 FT /locus_tag="BB1074" FT /product="GntR-family transcriptional regulator" FT /note="Similar to Yersinia pestis putative GntR-family FT transcriptional regulatory protein ypo3651 SWALL:Q8ZAY1 FT (EMBL:AJ414158) (220 aa) fasta scores: E(): 7.9e-24, 40.09% FT id in 222 aa, and to Rhizobium etli hypothetical protein FT yp052 SWALL:AAM54940 (EMBL:U80928) (229 aa) fasta scores: FT E(): 1.6e-27, 42.54% id in 228 aa" FT /protein_id="CAE31572.1" FT /translation="MTASPLSISPALAPVRRQIEDRLREAIHGGLLKPGEKLIERDLCE FT RLGVSRTSLREALRQLEAEGLINLVPYRGPEVAYLSLKEAEDIYQMRELLEGFAGQQFA FT ALATPAERQELDECFDAIRATIKAGEYARLIELKESFYRTLLNGARNDVARETLLRLNG FT RVRRLRAISLSASDRPLETLAELEAVMAAIRNQDPETARQACSHHVRQAAKAALALLRQ FT QLADAS" FT misc_feature complement(1157048..1157224) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.1e-15" FT misc_feature complement(1157096..1157170) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT misc_feature complement(1157102..1157167) FT /note="Predicted helix-turn-helix motif with score FT 1126.000, SD 3.02 at aa 38-59, sequence FT LIERDLCERLGVSRTSLREALR" FT CDS 1157422..1157829 FT /transl_table=11 FT /locus_tag="BB1075" FT /product="putative carboxymuconolactone decarboxylase" FT /EC_number="4.1.1.44" FT /note="Similar to Acinetobacter calcoaceticus FT 4-carboxymuconolactone decarboxylase PcaC SWALL:DC4C_ACICA FT (SWALL:P20370) (134 aa) fasta scores: E(): 6.3e-18, 41.6% FT id in 125 aa, and to Rhizobium etli probable FT gamma-carboxymuconolactone decarboxylase PcaC1 FT SWALL:AAM54935 (EMBL:U80928) (158 aa) fasta scores: E(): FT 5.2e-27, 54.91% id in 122 aa" FT /protein_id="CAE31573.1" FT /translation="MSTEMFDKGLQVRREVLGAEYVDGSMRSANDFMMAFQDITTQWCW FT GYAWTRPGLERKTRSIINLAMLTALNRPGEIKLHVKGALTNGVTPDEIKEVLLQATVYC FT GIPAGLDAFKIANQVLIDEGAIEAGAIGHGK" FT misc_feature 1157485..1157775 FT /note="HMMPfam hit to PF02627, DE Carboxymuconolactone FT decarboxylase, score 1e-22" FT CDS 1157878..1158732 FT /transl_table=11 FT /locus_tag="BB1076" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium tuberculosis hypothetical FT protein rv3510c or mtv023.17 or mt3614 SWALL:O53555 FT (EMBL:AL022022) (278 aa) fasta scores: E(): 2.9e-12, 27.08% FT id in 288 aa, and to Streptomyces griseus subsp. griseus FT NonC SWALL:Q9XDF3 (EMBL:AF074603) (317 aa) fasta scores: FT E(): 2.4e-09, 27.82% id in 248 aa" FT /protein_id="CAE31574.1" FT /translation="MTIDMRLRPPLQSWKSTAQFKEGTAYYPTRYGFPRPKSVGTQDIG FT DLLAEMDEADITWGVVMGRQSAPPHGIVPNEEISDFVRQHADRFVGFAGIDLRDIDKAV FT ADLDGYARSDEFKGISIEPGAGFVPLYSDDPSLFPLYERAQELQLPLSITLSGYLSSMA FT GHPTSYGNPSPVATVARKFPRLKIVVSHAAWPNVMPMLEVAFLHDNVYVSPDLYMNHVH FT TPGAHEYINAAKFYLADRLLFGTAYPSRPLKESVAGFRQWDLDSELAEKILHRNAARLL FT GLE" FT CDS 1158738..1159595 FT /transl_table=11 FT /locus_tag="BB1077" FT /product="conserved hypothetical protein" FT /note="Similar to Sulfolobus solfataricus hypothetical FT protein sso2112 or c02006 SWALL:P95886 (EMBL:Y08256) (269 FT aa) fasta scores: E(): 8.8e-10, 28.57% id in 294 aa, and to FT Mycobacterium tuberculosis hypothetical protein rv2303c or FT mtcy339.06 or mt2360 SWALL:Q50662 (EMBL:Z77163) (307 aa) FT fasta scores: E(): 8.9e-16, 27.36% id in 296 aa" FT /protein_id="CAE31575.1" FT /translation="MNRIIDMRCRPPLPEFREYFDIPRITWHGARTGAKQVSRAFVEGS FT MDLFFEEMDQAGIEIAVVQGRNSPAVFMGKQFNAAFIPNERLAQIQDQYAGRFVCFAGI FT DVSNTAHNAVEETVRSIKSLGLKGIFIEPGRQIQSTPDDERIFPVYEKCIELDIPVNLM FT SGPYAGADIGVSDPLYVDRLCTRYPELKIILGHGGYPYVQQILGVAFKHTNLFVSPDMY FT VFAPGGQAYIDAANGALRDQMVYGSAYPLRPVTQTVSDTLGLGLSADSERAYLELNARK FT LLNI" FT CDS 1159654..1160628 FT /transl_table=11 FT /locus_tag="BB1078" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 6.2e-47, 44.69% id in 311 aa, and to FT Agrobacterium tumefaciens hypothetical protein atu4727 or FT agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta FT scores: E(): 8e-45, 43.12% id in 320 aa" FT /protein_id="CAE31576.1" FT /translation="MISKFAVSALVAMGLAIGQPGMAAAGAFPDKPVTIVVPWPAGGGT FT DILARALGQRLGAAWGQPVVIENRAGAAGFIGAQAVANAAPDGYRIMMTSMAVATNRIF FT LNKTEFDPIEDFAPITLLAGAPHVLVVRPDLPAKDVKQLLELAKPGKSTLKYSSAGPGS FT PWHLAAELFKAQTGADILHVPYKGGAPAVTDVLGKQVDLTFANIMLVRPYINDGKLRAL FT GVTTRQRAGALPDVPTLAEQGLDGYDFTSWYAFFAPKGTDPAILDKLSADIRAAVNAPE FT VKRTYVESGLEIIGSTPAELTQYLRQEMERWTRVAKQAHLTAD" FT misc_feature 1159654..1159722 FT /note="Signal peptide predicted for BB1078 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.641 between residues 23 and 24" FT misc_feature 1159795..1160616 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.5e-110" FT CDS 1160642..1161904 FT /transl_table=11 FT /locus_tag="BB1079" FT /product="putative hydrolase" FT /EC_number="3.-.-.-" FT /note="Similar to Methanosarcina mazei hydrolase mm2650 FT SWALL:AAM32346 (EMBL:AE013511) (264 aa) fasta scores: E(): FT 1.4e-06, 24.4% id in 254 aa, and to Rhizobium etli FT hypothetical protein yp051 SWALL:AAM54939 (EMBL:U80928) FT (409 aa) fasta scores: E(): 2.6e-56, 43.6% id in 399 aa" FT /protein_id="CAE31577.1" FT /translation="MQDNKELNAAVDAWLDDAVADAVLARAATGLSATLALAAPSGRWR FT LAVGPHGWAVQPGAPADAADVAIEADDLAWLQLLKADPVEPGWQSFGAIIRQNERFSVT FT GEPLRLAHLLPCLERLVELAHRGKRRAEAPAAARDMALIQGRYTVHGAGHSPVSPVYWE FT ESGAGAPIVMLHTAGADSRQFRHQLSDVEVARDWKMYAFDMPGHGRSGMPAGWSDGEAY FT LLTQQAYLDACVQFLEQVVKAPAIVMGCSMGAAMSLVLGARRPDLVAGVIALEAPWRAP FT GRRSPLLADARVNAGLHNPSYVRALLSPTSPQAYRDEACWIYSQAGFGIYSGDLGFYSN FT EFDGELVGRELARTDVPVYLLTGSYDYSASPDNTRKLAALVPQAEFHEMADLGHFPMSE FT NPDGFRPYWLGALARLRGQMR" FT misc_feature 1161230..1161877 FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 1.3e-12" FT CDS 1162097..1162774 FT /transl_table=11 FT /locus_tag="BB1080" FT /product="putative isochorismatase" FT /note="Similar to Salmonella typhimurium, and Salmonella FT typhi SlsA or stm3761 or sty4025 SWALL:Q9Z622 FT (EMBL:AF106566) (226 aa) fasta scores: E(): 1.7e-73, 88.44% FT id in 225 aa, and to Salmonella typhi hypothetical protein FT Sty0948 SWALL:Q8Z819 (EMBL:AL627268) (225 aa) fasta scores: FT E(): 5.5e-74, 89.77% id in 225 aa" FT /protein_id="CAE31578.1" FT /translation="MSVPANFNGLRPVIDPADAVMLLIDHQSGLFQTVGDMPMPELRAR FT AAALAKMATLSKLPVITTASVPQGPNGPLIPEIHANAPHARYVARKGEINAWDNPEFVA FT AVKATGRKTLIIAGTITSVCMAFPSISAVADGYKVFAVIDASGTYSKMAQEITLARVVQ FT AGVVPMDTAAVASELQRTWNREDAQQWAEVYTQVFPAYQLLIESYVKAQDVLKNNEILD FT SRR" FT misc_feature 1162136..1162627 FT /note="HMMPfam hit to PF00857, DE Isochorismatase family, FT score 2.6e-15" FT CDS 1162967..1163911 FT /transl_table=11 FT /locus_tag="BB1081" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Yersinia pestis LysR-family FT transcriptional regulatory protein ypo2150 SWALL:Q8ZEL4 FT (EMBL:AJ414151) (301 aa) fasta scores: E(): 3.4e-52, 48.33% FT id in 300 aa, and to Ralstonia solanacearum probable FT transcription regulator protein rsp0662 or rs01787 FT SWALL:Q8XS19 (EMBL:AL646080) (297 aa) fasta scores: E(): FT 2.2e-52, 49.66% id in 298 aa" FT /protein_id="CAE31579.1" FT /translation="MRRRISIREKSLENLNDLYYFVQVVRHGGFAQAGRLLNIPKSRLS FT RRVAALEERLGVRLVHRSSRSFSVTHIGQEYYAQCQAMLAGAEAAQEVIDRVHAEPQGI FT LRVTAPPALIQGALAQLVARFMIQCPKVHVHLKSLNRPVDVLSEGFDLAVRVRFGPVES FT SDLVMKPLGVARQRLVASPRLLARGAAIRGPEDLARLPSVALGTDLREGRWDLEDDQGR FT RFAVALRPRLATDDATALKAAVLAGVGAGVLPLVMVREELRAGTLVALCEPWQPAPGQV FT HAVFPSRRGVMPAVRELLEFLGKEYPRDDDGGL" FT misc_feature 1163009..1163188 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2e-17" FT misc_feature 1163048..1163113 FT /note="Predicted helix-turn-helix motif with score FT 1337.000, SD 3.74 at aa 79-100, sequence FT GGFAQAGRLLNIPKSRLSRRVA" FT misc_feature 1163258..1163887 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 5.9e-40" FT CDS 1163966..1164463 FT /transl_table=11 FT /locus_tag="BB1082" FT /product="putative acetyltransferase" FT /note="Similar to Clostridium acetobutylicum FT nh2-acetyltransferase cap0111 SWALL:Q97TJ0 (EMBL:AE001438) FT (162 aa) fasta scores: E(): 1e-13, 33.33% id in 150 aa, and FT to Staphylococcus aureus hypothetical protein Mw2581 FT SWALL:BAB96446 (EMBL:AP004831) (166 aa) fasta scores: E(): FT 1.1e-11, 28.84% id in 156 aa" FT /protein_id="CAE31580.1" FT /translation="MSPAQPLFRPAVPADAARCHQIEISAYEGDEAATREKIARRIALY FT PEGFLVMELDGAVIGFINSGCAHEVVMSDEAFKELVGHDPQAPNVVIMSVAVDPACQGR FT GHATAMMRVFVARMRALGKRTIHLMCKQRHVALYERLGYRYVRPSASDHGGMAWHEMLM FT TL" FT misc_feature 1164113..1164397 FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 5.9e-13" FT CDS complement(1164743..1165963) FT /transl_table=11 FT /locus_tag="BB1083" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc1197 or rs05729 SWALL:Q8Y047 (EMBL:AL646063) FT (405 aa) fasta scores: E(): 2.1e-60, 44.78% id in 393 aa, FT and to Caulobacter crescentus hypothetical protein Cc3562 FT WALL:Q9A2J9 (EMBL:AE006014) (433 aa) fasta scores: E(): FT 2.5e-68, 47% id in 400 aa" FT /protein_id="CAE31581.1" FT /translation="MTKDTTTPARSGPLAGLRILELGTMIAGPVVGTLLADFGAEVIKI FT EQPGTGDTLRQIGPFEQGESLYWNVEGRNKKSVTLDLRLPEGQALLRDLARQADAVVEN FT FRPGTLAKWGLDYAELARANPRIVMLSISGFGQTGPNASRAAYDRIALAFGGLMHLTGY FT PDRPPLKSGNSLADYQSALFGAFALMMALYQRDACGGPGQHIDLALYESVFRFTDVLSA FT AHDRLGTVRQRQGNVHFAAAPGETFEMRDGRFLILTVSNSAMFARLCAAMDQPALAAEP FT RYATHELRWQHIGELNGTVAAWIKDNDPEHVFAALQAQGIAHATTYSIADIFADPHYAA FT RQNIVTVDTPRLGPLKMQGVGPKFSATPAGPIAPAPALGEHTAEVLGGLLGLSEASIAG FT LAARGAI" FT misc_feature complement(1165160..1165732) FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 1.2e-69" FT CDS complement(1165980..1166579) FT /transl_table=11 FT /locus_tag="BB1084" FT /product="TetR-family transcriptional regulator" FT /note="Similar to Streptomyces coelicolor putative FT transcriptional regulator sco3833 or sch69.03C SWALL:Q9XA31 FT (EMBL:AL079308) (209 aa) fasta scores: E(): 5e-10, 33.14% FT id in 181 aa, and to Azoarcus evansii putative regulator FT SWALL:Q9FA56 (EMBL:AJ278756) (194 aa) fasta scores: E(): FT 5.5e-10, 28.93% id in 197 aa" FT /protein_id="CAE31582.1" FT /translation="MFQVKRRALIREAGKSFSRLGYHNASLDDVARALHVSKPALYYYV FT KDKNEILFECHNFALDLGDRAMEEARAAQATAFGRLREFVFRYVHMINGELGSYAVLTE FT PATSLREPERQAILKRRRQFDSALRQWVNEAIADGDIADNDPGLVVAFFMGAINQIPLW FT FNPEGPIPGEQVARIFSNLISCGMRGERGNAPPGRG" FT misc_feature complement(1166415..1166555) FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 4.1e-12" FT misc_feature complement(1166427..1166519) FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT misc_feature complement(1166442..1166507) FT /note="Predicted helix-turn-helix motif with score FT 1720.000, SD 5.05 at aa 44-65, sequence FT ASLDDVARALHVSKPALYYYVK" FT CDS complement(1166712..1167716) FT /transl_table=11 FT /locus_tag="BB1085" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus, and Burkholderia FT cepacia 2,4-diphenoxyacetic acid gene cluster SWALL:Q9RHQ7 FT (EMBL:AB028643) (337 aa) fasta scores: E(): 1e-38, 39.55% FT id in 316 aa, and to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1e-36, 40.37% id in 317 aa" FT /protein_id="CAE31583.1" FT /translation="MFHDFRHKLARRLALRRMFALALAACAAPALAGTDAFPSKSIAVV FT VPMSPGGATDVLARLLAQHLTQALGQPVVVENKPGATGSIGAQHVARADPEGYTLLLAP FT SSVAVVNPLVSKVPYDFERDFRPVGLLAHAETVLVASSASGLKSLDDVIRYAKQNPGKL FT KFGSNGQGGALHLGAEFLQQAAGIELTHIPYKGASQAETALASGEIDLMVTNTISAMPH FT IRAGRLVALAIASPGSSRELPQVPSASATLPGYSVDTWLGLYAPARTPDAVVARLNAAT FT NAFLGEAATQEALRNRGFEPAPGTPAAALQFQRGEAAMWEKVVTQAKARGSLE" FT misc_feature complement(1166730..1167548) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.8e-92" FT misc_feature complement(1167621..1167716) FT /note="Signal peptide predicted for BB1085 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.877) with cleavage site FT probability 0.872 between residues 32 and 33" FT CDS complement(1167779..1168957) FT /transl_table=11 FT /locus_tag="BB1086" FT /product="putative thiolase" FT /note="Similar to Archaeoglobus fulgidus 3-ketoacyl-CoA FT thiolase af2416 SWALL:O30255 (EMBL:AE001108) (384 aa) fasta FT scores: E(): 1.7e-41, 39.39% id in 396 aa, and to FT Methanopyrus kandleri acetyl-CoA acetyltransferase mk1378 FT SWALL:Q8TVL1 (EMBL:AE010431) (394 aa) fasta scores: E(): FT 4.2e-39, 37.37% id in 388 aa" FT /protein_id="CAE31584.1" FT /translation="MTQRTAVTGVGMTPFGKFLDRSTRSLAEAAVRDALGDAGIAPAQV FT DQVYFANAAAGLITGQEMIRGQAALRHTGLAGKPIFNVENACASSSTAFHLAWQAIQGG FT QADIVLVVGAEKLSHPDKSVSFGAFGKAVDLEEPMPEHIGSGSGTIFMDIYAEKTRKFM FT RATGATAQDFARIVVKSRRAGARNGNAQFRKETTIEEVLASRMISDPLTLPMCSSIGDG FT AAAIVLCSARALAGLTGARPVWVGGSTLVTALDDADQPNCATRVSQAVYRQAGIAPSEI FT HVAEVHDASAPAELIHYENLGLCPPGGGVDLLRSGATDLNGRVSVNASGGLLSRGHPIG FT ATGVAQLVELTHQLRGEAGARQREHAKVGLAENNGGQLGGDAAVAVATILHL" FT misc_feature complement(1167797..1168246) FT /note="HMMPfam hit to PF02803, DE Thiolase, C-terminal FT domain, score 2.9e-11" FT misc_feature complement(1167929..1167979) FT /note="PS00737 Thiolases signature 2." FT misc_feature complement(1168262..1168954) FT /note="HMMPfam hit to PF00108, DE Thiolase, N-terminal FT domain, score 1.1e-09" FT misc_feature complement(1168484..1168954) FT /note="HMMPfam hit to PF00109, DE Beta-ketoacyl synthase, FT N-terminal domain, score 0.085" FT CDS complement(1168988..1169767) FT /transl_table=11 FT /locus_tag="BB1087" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="Similar to Pseudomonas putida Fadb1X SWALL:Q9AHX8 FT (EMBL:AF290950) (257 aa) fasta scores: E(): 1.7e-27, 39.53% FT id in 258 aa, and to Caulobacter crescentus enoyl-CoA FT hydratase/isomerase family protein cc0006 SWALL:Q9AC55 FT (EMBL:AE005675) (262 aa) fasta scores: E(): 1.1e-30, 44.48% FT id in 254 aa" FT /protein_id="CAE31585.1" FT /translation="MEELIIETKDGVRWLTLNRPHALNALNAALVAALTEAIGQAQADP FT QIGAIVLTGAGRAFCAGADLKETERRTQEQGSNVAFIRAIGALTELIEAGAKPVIAAVN FT GIAVAGGLELVLACDIVLAADSARLGDAHANYAMFPGGGATVRLPRRIGIGNAKYVMFT FT GQSLPASEWVALGLVARAVPADQLAEHAAQLAGQIAGKSPLVIARMKSALNDATDQPAP FT VAMRRERELNHLHSLSFDRAEGLAAFREKRPPRFQGR" FT misc_feature complement(1169162..1169185) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1169219..1169731) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 7.8e-49" FT misc_feature complement(1169408..1169470) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 1169850..1170635 FT /transl_table=11 FT /locus_tag="BB1088" FT /product="putative short chain dehydrogenase" FT /note="Similar to Synechocystis sp. 3-oxoacyl-[acyl-carrier FT protein] reductase 1 FabG1 or slr0886 SWALL:FAG1_SYNY3 FT (SWALL:P73574) (247 aa) fasta scores: E(): 1.9e-23, 38.73% FT id in 253 aa, and to Anabaena sp. 3-oxoacyl-[acyl-carrier FT protein] reductase FabG or alr1894 SWALL:Q8YVT0 FT (EMBL:AP003587) (251 aa) fasta scores: E(): 1.3e-23, 36.61% FT id in 254 aa" FT /protein_id="CAE31586.1" FT /translation="MNYFSLEGRNVLVTGAGQGVGRAIALAMAGHGAGAVVVNDFHAER FT AEAVAAELRALGCRALGVQADVTDRASVKRMFDAIRQAFGSLHVLVNNAGNAGPGAVSA FT DLPKFWESDEADWQKWIGTNFNGVLNCCREAIPFLMEHQAGRLITIVSDAGRVGESGYA FT VYSGAKAGAAGFMRAMAKELGRFMATANCIALASVETPGLAQRNADPDLVRKKLAKYVI FT RRQGRPEDAAGAAVFLASDAGSWITGQTLPVNGGYSFNQ" FT misc_feature 1169868..1170620 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 6.4e-75" FT misc_feature 1170303..1170389 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 1171039..1171833 FT /transl_table=11 FT /locus_tag="BB1089" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydratase Crt or cac2712 FT SWALL:CRT_CLOAB (SWALL:P52046) (261 aa) fasta scores: E(): FT 7.1e-18, 28.34% id in 254 aa, and to Xanthomonas axonopodis FT 3-hydroxybutyryl-CoA dehydratase Crt or xac1584 FT SWALL:AAM36452 (EMBL:AE011790) (260 aa) fasta scores: E(): FT 1.5e-19, 33.99% id in 253 aa" FT /protein_id="CAE31587.1" FT /translation="MSAPIPEFAHSLVTRDARGVYTLQIHDAKSLNILATPVTLGLTAA FT ARWIAAQEDARAVVIRGSGERAFIGGANIYEMAELDPDGARGFITNLRHLCDAVADIPV FT PTIARIPGFCLGAGMELAAACDIRLGTHDAVFGMPEVRVGIPSVIHAVLLPALIGPGAT FT NWLLLTGETVDGAQALRWGYLQFACEAAELDALVERTVAPIAASGPRAVRSQKSLLRYW FT SHSSVEAGLDRSVAAFGEAFTTSEPREYMAPFLARKQQREQQ" FT misc_feature 1171099..1171605 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 1.3e-23" FT CDS 1171833..1172969 FT /transl_table=11 FT /locus_tag="BB1090" FT /product="conserved hypothetical protein" FT /note="Similar to Rhodococcus sp. AD45 putative racemase FT IsoG SWALL:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: FT E(): 8.5e-41, 35.42% id in 367 aa, and to Streptomyces FT coelicolor putative racemase sco0362 or scf41.21 FT SWALL:Q9RJU8 (EMBL:AL117387) (403 aa) fasta scores: E(): FT 2.6e-36, 37.13% id in 377 aa" FT /protein_id="CAE31588.1" FT /translation="MSGPLRGVRVIDMTSVAMGPYATQILGDMGAEVIKVEAPEGDVFR FT TSAPAAHAGMGPAYLNLNRNKYSVTLDAKAPADLDRLLALIAGADVFVSNVRPRALARL FT GLDAATLCARHPRLVYCSAVGYGQDGPYAAQPAFDDIIQARSGLADLQGRNGDAPAYVN FT TILADKVAGLTLAYAIPMALYERERSGQGQAIEVPMFETLVSFALAEHMSGHTFEPPRG FT PMGYSRVLSPQRRPYRTRDGYLALLPYTDAQWQRFFALAQRADLAADPRYVDAAARARH FT FDALYQDLADIVAQRGTQQWLDLLADADIPHSRVNTPEGLFDDPHLRATGFFQQVDHPT FT EGALVTTAIPVRFSRTPGSVRRLAPRQDADRDMLDAGR" FT misc_feature 1172037..1172606 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 1.5e-32" FT CDS 1173009..1173923 FT /transl_table=11 FT /locus_tag="BB1091" FT /product="LysR-FAMILY transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator pa1998 SWALL:Q9I2B1 FT (EMBL:AE004626) (306 aa) fasta scores: E(): 2.2e-18, 30.1% FT id in 289 aa, and to Rhizobium meliloti putative FT transcriptional regulator protein rb0123 or smb20123 FT SWALL:Q92X39 (EMBL:AL603642) (298 aa) fasta scores: E(): FT 1.2e-20, 28.76% id in 292 aa" FT /protein_id="CAE31589.1" FT /translation="MNITLKQLRVFCALYELRSFTAAARAAFVTQSAVSKLCAELEAEV FT GQPLFERSTRSVTPCDGAADFYAYAQDILGTVRAAERSMAGLRALERGMVGVATSPLMM FT IGLLGEVVTAYHRAHPSVKLELFELTTDDTIEYVRHGRADFGIASLEAPPEEQLEARVI FT YRDTMYAVCAPGHALAAKRRLAWADVAAHEHIMLRNAYSVRRSLDRVAAELGLTFRSRI FT EAGLLSSVLNLVGEGLGITVVPGYACGPARQLGLRVLPITGARRHGHELWLIQRRSARL FT SLAAKTFLDDALAYLEARQGRGD" FT misc_feature 1173021..1173200 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 7.1e-20" FT misc_feature 1173060..1173125 FT /note="Predicted helix-turn-helix motif with score FT 1643.000, SD 4.78 at aa 18-39, sequence FT RSFTAAARAAFVTQSAVSKLCA" FT misc_feature 1173270..1173899 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 5.6e-42" FT misc_feature 1173783..1173800 FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT CDS 1174036..1175019 FT /transl_table=11 FT /locus_tag="BB1092" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 4.7e-37, 35.04% id in 331 aa, and to FT Xanthomonas axonopodis hypothetical protein Xac2278 FT SWALL:AAM37131 (EMBL:AE011865) (315 aa) fasta scores: E(): FT 5.6e-35, 37.07% id in 321 aa" FT /protein_id="CAE31590.1" FT /translation="MTRVFEGARRRLLAAGTLAAFAALAGAAHAQATYPDKPITIVVPF FT SPGSATDTSARIISEKLGPRLNVPIVIENKPGASGTIGASFAARAQADGYTLILTSSST FT HSATPALFRKLPFDPTGDFIHVIRIATIPMMLVVRDDAPYKSAEELVKATQAKPLNYAY FT GSPTSQIAGATFNTVAGAAAAGVPYKSQPPAVTDLLGGHVDYLFADLSVVTSFMQGGKL FT RGLAFTGQTRAKDFPDVPTLAELGYRNFDLVVWVGVAAPKGTPDEVVQRVNREVAAVLA FT EPDVMQRFESLGMQVLPNSVAEHREFALAQRKVWTQRAVDAKIEPQ" FT misc_feature 1174036..1174125 FT /note="Signal peptide predicted for BB1092 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 30 and 31" FT misc_feature 1174195..1175007 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.9e-73" FT CDS 1175340..1176317 FT /transl_table=11 FT /locus_tag="BB1093" FT /product="putative membrane protein" FT /note="Similar to Xanthomonas campestris hypothetical FT protein Xcc0756 SWALL:AAM40071 (EMBL:AE012175) (347 aa) FT fasta scores: E(): 8.9e-52, 47.46% id in 316 aa, and to FT Brucella melitensis hypothetical membrane spanning protein FT Bmeii0279 SWALL:Q8YD98 (EMBL:AE009666) (331 aa) fasta FT scores: E(): 6.9e-51, 45.79% id in 321 aa" FT /protein_id="CAE31591.1" FT /translation="MLAGQALAALAIALGAAWGTLALAVRGPARLRAPLAGAWLVAAAL FT ALYALYARAWSGLAPFAAAALCLAWWWRGIKPSLDRPWQAEVARLLAGSTDGQRVRLSN FT VRDFHWRGADDFDARWRDDEYDLGLLESVDLVLSYWGRAAIAHTMVSFGFADGRHLAFS FT VEIRRKVGEKFSEIGGFFRQYERCIVAATEQDCMRVRTNIRGEDGYLYRVRMPREGAQA FT LFLAYVHAANQLRERPRFYNTLTANCTTIVFRLAEQVAPGLPLDYRLLLSGYLPGYLYD FT LDALEGVGTLAERRAAARYTDLARAEPDPAAYSAAIRAPRRAAA" FT misc_feature join(1175340..1175408,1175442..1175510) FT /note="2 probable transmembrane helices predicted for FT BB1093 by TMHMM2.0 at aa 51-73 and 85-107" FT CDS complement(1176298..1176777) FT /transl_table=11 FT /locus_tag="BB1094" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT Mlr1489 SWALL:Q98KG3 (EMBL:AP002997) (159 aa) fasta scores: FT E(): 8.3e-12, 31.41% id in 156 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa5385 SWALL:Q9HTH9 FT (EMBL:AE004951) (159 aa) fasta scores: E(): 2.3e-09, 29.67% FT id in 155 aa" FT /protein_id="CAE31592.1" FT /translation="MPALPSTTLSVDPAWIDAYGHMNAAEYVGVFDRVGFDLLREVGVG FT LDYTEATQCGIYTMNIQVAYLREVLAGDPLMLRVRLLEADDKRVLCLMELWQTRDDYLA FT ATMEQLSLHVDLRTRRSKPFDPALAERLARTVSEHAQAPLPAGYRRILPLKPPRA" FT misc_feature complement(1176376..1176723) FT /note="HMMPfam hit to PF03061, DE 4-hydroxybenzoyl-CoA FT thioesterase, score 0.0025" FT CDS complement(1176899..1177870) FT /transl_table=11 FT /locus_tag="BB1095" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 9.8e-50, 48.36% id in 306 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 4.9e-42, 40.92% FT id in 303 aa" FT /protein_id="CAE31593.1" FT /translation="MKRYAGILLGMLLAAPVAPALAADNWPSQPVRFVVPFPPGGPTDL FT MARLISEPLSKKLGTSVIVENKAGAAGNVGSAQVAKSAPDGYTILLAASGNMSVNQTLF FT KSLPYDPIKDFASIIQISRFPLVLEVNPESGIKTVAEYIAYTKANPGKATFGSAGNGSP FT QHLGGELFKTLTQTPLQHIPYKGAGPALNDLIGGQILSMFDILGSSIQHINSKRLTPIA FT ITTKARSPLLPDVPTIDESGLPGFDYYAWHGIVAPAGTPPEVIARYNTALNEIFADPAF FT RTRWEAIGSDVVGGTPAQFDTLVRSEAERLGGLVRQLGVQLD" FT misc_feature complement(1176911..1177735) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 8.7e-120" FT misc_feature complement(1177805..1177870) FT /note="Signal peptide predicted for BB1095 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 22 and 23" FT CDS complement(1177963..1178844) FT /transl_table=11 FT /locus_tag="BB1096" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator pa3594 SWALL:Q9HY32 FT (EMBL:AE004780) (295 aa) fasta scores: E(): 9.1e-46, 48.74% FT id in 279 aa, and to Xanthomonas axonopodis transcriptional FT regulator LysR family xac0316 SWALL:AAM35208 FT (EMBL:AE011657) (295 aa) fasta scores: E(): 8e-32, 38.56% FT id in 293 aa" FT /protein_id="CAE31594.1" FT /translation="MDLRQLKYFVALAEELHFRRAAARLSISQPPLSHAIKLLEEELGT FT ALFERTTKSVALTSAGQAFYPEALKVLAQLQVACAVTREVGAGKRGHLRIGFVGGMLLR FT GLPEIVRDYAQRNPEVIVTLHETSSAEQAKAIARGQLSAGFLHAGLLAPELEGQVIRDE FT PFVACVPRDHRLAGRRVIDVRQLAGEDMVLFARDVSPGYYDSVIALCMDAGFSPRIRHE FT VAHWLTALLLISRGGGVALVPDPFVDAGLDGVRYLRLKACDSRSYAHFAWKRDASDPLL FT REFVAFALRRYR" FT misc_feature complement(1177969..1178589) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 8.8e-47" FT misc_feature complement(1178659..1178838) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.7e-27" FT misc_feature complement(1178704..1178796) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1178734..1178799) FT /note="Predicted helix-turn-helix motif with score FT 1461.000, SD 4.16 at aa 16-37, sequence FT LHFRRAAARLSISQPPLSHAIK" FT CDS 1178957..1180078 FT /transl_table=11 FT /locus_tag="BB1097" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3592 SWALL:Q9HY34 (EMBL:AE004779) (395 aa) fasta FT scores: E(): 2.5e-81, 56.78% id in 361 aa, and to Rhizobium FT meliloti putative conserved membrane-anchored protein FT rb0848 or smb21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa) FT fasta scores: E(): 3.3e-52, 42.89% id in 359 aa" FT /protein_id="CAE31595.1" FT /translation="MAGLGFEPHSPGQTGALAGIRVLDLSRVLGGPYCTQILGDHGADV FT LKIEPPGGDETRAWGPPFQDGTASYYLAVNRNKRTARLDLSTQQAQQAVLGLLPECDVV FT VENFRAGTMEKWGLGPQALQERFPRLVYCRVTGFGETGPMGGLPAYDTAVQAMVGLMSL FT NGPADGGPCRVGFPVIDLVTGMNAALGVMMALQERQRSGRGQYVEAALYDSGISLLHPY FT AGNYFLSGQPPARVGNAHSNIYPYDVFDTATVPIYLAVGNDMQFERLMRHLGRADVLDD FT PRFGANRSRSEHRAALRALLAGLFQALDGETLAQALLDAGVPCSPVLTVEKVLAHPQTA FT ERAMVARIGEHYTGLASPIKLGRTPASYRIAPA" FT misc_feature 1179197..1179766 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 1.1e-53" FT CDS 1180151..1181809 FT /transl_table=11 FT /locus_tag="BB1098" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable acyl-CoA FT dehydrogenase pa3593 SWALL:Q9HY33 (EMBL:AE004779) (575 aa) FT fasta scores: E(): 5e-121, 59.77% id in 542 aa, and to FT Mycobacterium tuberculosis putative acyl CoA dehydrogenase FT fade35 or rv3797 or mtv026.02 or mt3904 SWALL:O53577 FT (EMBL:AL022076) (593 aa) fasta scores: E(): 1.6e-47, 37.41% FT id in 564 aa" FT /protein_id="CAE31596.1" FT /translation="MSSPEIAARLADPIPDSLGQNLYLADADLPALLSLYLAPDLLAHL FT TPHLHRLGELAGGRLEQLAAQADKHTPELVVRTRQGHDCSEVVKHPAYVELERWAFSEF FT GLAAASHAPGVLGWHEPLPAAAKYTLFYLFSQSEYGLTCPVNMTDSFTRTLKKYGEPAL FT VQRYLARLTSLDFDTYYQGAMFMTEQGAGSDIAQTAATARRDGEHWLLSGDKWFCSNAS FT ADLAMVLARPDDAPAGMAGVSLFLMPRVKADGTPNAYRIIRLKDKLGTRSMASGEIRLE FT GAQAYLIGEVGKGFQQMAEMVNSSRLSNGVRSGALMRRALSEASYVAEHRRAFGKRLAD FT LPLIRRQLDKMRLMTEQARTFAYHTAQALRGADEGDETARRVVRIMTPLIKFRACRDAR FT KVTGDAMEVRGGCGYIEEWPEARLLRDAHLGSIWEGTSNIVALDVYRAINREDALTAYE FT GALRNLLGQASGPHGAALAQRLDLVCAYAARQAGAQCEEAAREVASALYHVGSAIQFAW FT EASQGGQLAHRHAYAADVLAHRLDPQLRRAGLLHD" FT misc_feature 1180706..1181014 FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 1.7e-08" FT misc_feature 1181024..1181497 FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 4.7e-45" FT misc_feature 1181369..1181428 FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT CDS 1181845..1182840 FT /transl_table=11 FT /locus_tag="BB1099" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 7.6e-39, 37.82% id in 312 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 7e-38, 37.57% FT id in 322 aa" FT /note="no significant database matches" FT /protein_id="CAE31597.1" FT /translation="MPTYRRLRRLALSIGAALLAAALSPVHAATGAYPAHPIQMVVPFT FT PAGPTDALARVLARTMQDTLGQSTIVLNKPGAGGNIGTQYVVKAAPDGYTLLFANSGAL FT FINANLYKDAGFDPKRDFTPIAYLGEIPNVLVVNKDLPVRSLGDFVKYANAHQNLSYAS FT SGSGSTNHLAGEMFNKLNGTRLVHVPYRGTSPAMNDLLGGQVTAMYLDVLSAAPYIKDG FT RLRALGVASVQRSKILPEVPTFREQDVPTLERGVAFGLVGPAALPAPALATLERAARAA FT LQAPDMRATLEKNGVQTPETILSQAEFTEFLARQVDGWKEIIERTGATVQ" FT misc_feature 1181845..1181928 FT /note="Signal peptide predicted for BB1099 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 28 and 29" FT misc_feature 1182001..1182828 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.6e-95" FT CDS 1183238..1185994 FT /transl_table=11 FT /gene="mgtA" FT /locus_tag="BB1100" FT /product="Mg(2+) transport ATPase" FT /EC_number="3.6.3.2" FT /note="Similar to Salmonella typhimurium Mg(2+) transport FT ATPase MgtA or stm4456 SWALL:ATMA_SALTY (SWALL:P36640) (902 FT aa) fasta scores: E(): 2.3e-182, 61.48% id in 919 aa, and FT to Escherichia coli, and Escherichia coli O157:H7 Mg(2+) FT transport ATPase MgtA or Mgt or CorB or b4242 or z5853 or FT ecs5219 SWALL:ATMA_ECOLI (SWALL:P39168) (898 aa) fasta FT scores: E(): 1.5e-183, 61.05% id in 914 aa" FT /protein_id="CAE31598.1" FT /translation="MKIIDTLLKRLFSRFLQGRHANRHFKRQAILETLRGAHGAAARAG FT AGRVARDMRRIASDDVAAAMARMGSREGGLSAAEVHERRTRFGPNEVEHEKPLPGWLHL FT WHCYRNPFNLLLSVLAGISFATDDMTAAAVIGTMVALSTLIRFVQEGRSSRAAERLKAM FT VGNTATVIRRREDGEPAGPPGRAARAEVPIRDLVPGDHIVLSAGDMIPADCRLLAAKDL FT FIAQAAMTGESLPVEKFAGINEPFETIFDAPNLVFMGTTVVSGAATALVIATGGRTYFG FT GLSARVTAADRAPTAFESGVNSVSWLLIRFALVMAPVVLLINGFTKGDWLEASLFALSV FT AVGLTPEMLPMIVTSTLAKGAVVMSRKKVIVKRLDAIQNFGAMDVLCTDKTGTLTQDRI FT ALERHTDAFGNSSDEVLRYAYLNSYYQTGLKNLLDHAVLEHAELQREMRVALDYRKVDE FT IPFDFERRRMSVVVSERDDHHELICKGAVEEMLSVCDRIRIETAQGPRHVPLDGEQLDR FT VRAFTHALNEQGLRVVAVAMKALPASQSAYSVADEAGLTLVGHIAFLDPPKESTEPALR FT ALAGHGVRVKVLTGDSELIAAHVCGRVGLEHGRYLLGAQIENMSDEHLACAVETHQLFA FT RLTPQDKERIVRALRGNGHVVGFMGDGINDAAALRAADIGISVDAGVDIAKEAADIILL FT EKSLMVLEEGVVEGRRTFCNMLKYIRMTASSNFGNVFSVLVGSAFLPFLPMLPLQLLVQ FT NLLYDISQIAIPFDDVDEELVAKPLKWNPADIGRFMVFFGPLSSVFDIATYVLMWHVFA FT ANTVGEQGLFQSGWFVVGLLTQTLIVHMIRSPKLPFIQSRAAWPLLLMTALIMAIGVAL FT PMSPLAGYFNLQALPPAYFPWLLAILLGYALLTTAMKKIYIRKFGWQ" FT misc_feature 1183394..1183621 FT /note="HMMPfam hit to PF00690, DE Cation FT transporter/ATPase, N-terminus, score 1.6e-12" FT misc_feature 1183637..1184374 FT /note="HMMPfam hit to PF00122, DE E1-E2 ATPase, score FT 2.5e-74" FT misc_feature 1184384..1185283 FT /note="HMMPfam hit to PF00702, DE haloacid FT dehalogenase-like hydrolase, score 2.4e-16" FT misc_feature 1184402..1184422 FT /note="PS00154 E1-E2 ATPases phosphorylation site." FT misc_feature join(1185425..1185493,1185605..1185673,1185701..1185760, FT 1185797..1185856,1185899..1185958) FT /note="5 probable transmembrane helices predicted for FT BB1100 by TMHMM2.0 at aa 730-752, 790-812, 822-841, 854-873 FT and 888-907" FT CDS 1186083..1187156 FT /transl_table=11 FT /locus_tag="BB1101" FT /product="two component sensor kinase" FT /note="Similar to Brucella melitensis sensory transduction FT histidine kinase bmeii0052 SWALL:Q8YDX2 (EMBL:AE009643) FT (355 aa) fasta scores: E(): 9.4e-55, 51.19% id in 334 aa, FT and to Xanthomonas axonopodis nodulation protein NodV or FT xac2149 SWALL:AAM37002 (EMBL:AE011850) (457 aa) fasta FT scores: E(): 1.9e-60, 51.85% id in 351 aa" FT /protein_id="CAE31599.1" FT /translation="MQPFGISTSPRIRLLLKFALIALATAVIFVADTGTRYEVAAAVFY FT AVVILTTARFLGRRGLLALCAVCIAMTALSFGLTPHGDLRSGLINTGISIAAIILTTYL FT VLKMEAARAAAHTAQARLMRIARVQGLESLTTSIAHEVNQPLAAIVASGNAGQRWLAQD FT PPNLDKARQAFERILGDAGRASNIIARVRSLTRGEPPDTSEFDFNQAMREVLELSRAEM FT ERNDIVLATDFAEGLAPALADRVQIQQVAGNLVLNAIEAMAAVPARNRLLRVGSAAADG FT AIVLSVADSGAGIPPGLHEHIFEAFWTTKEEGIGVGLSISRSIVEANGGQIWAEPDAGA FT GATLRFSVPALAREQRP" FT misc_feature 1186083..1186175 FT /note="Signal peptide predicted for BB1101 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.973) with cleavage site FT probability 0.729 between residues 31 and 32" FT misc_feature join(1186116..1186184,1186197..1186250,1186263..1186322, FT 1186332..1186400) FT /note="4 probable transmembrane helices predicted for FT BB1101 by TMHMM2.0 at aa 12-34, 39-56, 61-80 and 84-106" FT misc_feature 1186470..1186682 FT /note="HMMPfam hit to PF00512, DE His Kinase A FT (phosphoacceptor) domain, score 1.5e-07" FT misc_feature 1186806..1187135 FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 1.4e-29" FT CDS 1187153..1187776 FT /transl_table=11 FT /locus_tag="BB1102" FT /product="two component response regulator" FT /note="Similar to Xanthomonas axonopodis nodulation protein FT NodW or xac2150 SWALL:AAM37003 (EMBL:AE011850) (203 aa) FT fasta scores: E(): 2.3e-50, 70.64% id in 201 aa, and to FT Brucella melitensis nodulation protein bmeii0051 FT SWALL:Q8YDX3 (EMBL:AE009643) (212 aa) fasta scores: E(): FT 2.7e-42, 61.02% id in 195 aa" FT /protein_id="CAE31600.1" FT /translation="MTADMQKAAGIVYIVDDDSSVRAALADLLASVGLRALTFGSTGEF FT LAQAMEDAPGCLVLDVRMPGQSGMDFHRRMAGLEINLPVIFITGHGDIAMGVQAMKNGA FT IEFLAKPFREQDLLDAIHAGIGLDRQRRERAAHAAALQARWASLSAGEQDVVRLVVQGL FT LNKQVAARLGISEITVKVRRGHAMRKMQAGSLAELVRITEKLKP" FT misc_feature 1187180..1187539 FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 1.8e-29" FT misc_feature 1187585..1187770 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00196, DE Bacterial regulatory FT proteins, luxR family, score 1.4e-13" FT misc_feature 1187636..1187719 FT /note="PS00622 Bacterial regulatory proteins, luxR family FT signature." FT CDS 1188020..1189018 FT /transl_table=11 FT /locus_tag="BB1103" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 1.7e-37, 36.94% id in 314 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 1e-36, 36.3% id FT in 325 aa" FT /note="no significant database matches" FT /protein_id="CAE31601.1" FT /translation="MIASFVHQLKFAVTAVACCAALAPVAHAQDSYPSRPTRLVVGFSP FT GGPVDVGARLLGEHLSRTMGTTFLVENRVGANAMIAAESVKRAAPDGYTVFVSSSSAIT FT LSPVLHKNTIRYNPEEDFAPVATIMEMPLILVVNNNDPKMKSVRTLQDLVELAKKNPGQ FT ITYGSAGPGNITQIAFEVLSSRAGIQMVHIPYKGTASAQSAILANEVNMVFDSLSVMAH FT IKSGAVRPLAISSNRRLAELPDVPTVQEAGYGDFNVASWVGLFVPKATPQAVIERLNKE FT VDGALKDKELAAKLTVQGPVLAMSPEEFQQRIRKESAELVEVVEKANISIN" FT misc_feature 1188020..1188103 FT /note="Signal peptide predicted for BB1103 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 28 and 29" FT misc_feature 1188176..1189006 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 9.4e-82" FT CDS 1189075..1190226 FT /transl_table=11 FT /locus_tag="BB1104" FT /product="[2Fe-2S] protein" FT /note="Similar to Beta vulgaris choline monooxygenase, FT chloroplast precursor Cmo SWALL:CHMO_BETVU (SWALL:O22553) FT (446 aa) fasta scores: E(): 4.9e-26, 30.31% id in 376 aa, FT and to Suaeda liaotungensis choline monooxygenase Cmo FT SWALL:AAM43920 (EMBL:AF354442) (442 aa) fasta scores: E(): FT 3.6e-26, 30.25% id in 357 aa" FT /protein_id="CAE31602.1" FT /translation="MPNQNPLFDAALYAGARRPLEEATSLPPQAYHDPAFYQREIDRIF FT MKRWNFIGHEGRLAAPGAYFAMDFAGVPIIVSRGEDGQVRAFANSCRHRGVRLVNGEGQ FT GRAFVCPYHGWSYAGNGELRAAPGMEGTHCFDRKDNGLLPVRLEKLGPFMWVNFDPDAA FT PLASQLGDLPSKIESHGLDELVLTRRAEYQVKCNWKVYVENFMDYYHTPTVHKNSLARG FT SLSVYHRKPVALEQCDGDYLVLYAQHEGTAGLLPGKEGFAHWPGLQGRCREGSTFVHTA FT TSALFGFTKDCVWYVKLNPTGPESIDLTVGSCFHRSTVARPDFDEKVQAYYDRWDVAVA FT EDNEIVEQQQLGVRSPLARPGRVSPLEAVSYAFRQRLLDALAL" FT misc_feature 1189216..1189512 FT /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain, FT score 2.9e-23" FT CDS 1190223..1191329 FT /transl_table=11 FT /locus_tag="BB1105" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT Mll9370 SWALL:Q981H8 (EMBL:AP003016) (399 aa) fasta scores: FT E(): 0.37, 26.56% id in 384 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa2597 SWALL:Q9I0P0 FT (EMBL:AE004688) (383 aa) fasta scores: E(): 1.6, 28.46% id FT in 260 aa" FT /protein_id="CAE31603.1" FT /translation="MKEPSMTASTDLMLLGTGEFAARLLFDIAASADQPVRVTVVGRSA FT PRLAWLRTAANARAVLFGRPVRFETRQCADFETDTLAGVLAQVRPRVVIQTASLQTASV FT LRSSDNAWSRLVANGGLSVTAAFQTVLSLKAGRAVAAAAPGAHYLNACFPDVTNGLLRH FT AGVDVLCGVGNVGILSNAFAGALDAREPGRVQVLAHYQQLGLWRRLPGERRGSVPRVWL FT DGREIDDVPGVFQDVMLSPQTAFDISGATGVPLALALAAGRSWSGHVPAPEGLPGGYPV FT RVDEQGAMALDLPAGLSREEAVAWNARFERDNGLVIDGQGNATYTGVLHEELQRHDAQL FT AQGFAARDVEQAAESLAVLRDRLQAQAC" FT CDS 1191364..1191684 FT /transl_table=11 FT /locus_tag="BB1106" FT /product="ferredoxin" FT /note="Similar to Rhodococcus erythropolis rhodocoxin ThcC FT SWALL:THCC_RHOER (SWALL:P43493) (106 aa) fasta scores: E(): FT 1.8e-12, 43.56% id in 101 aa, and to Corynebacterium FT glutamicum ferredoxin cgl0549 SWALL:BAB97942 FT (EMBL:AP005275) (106 aa) fasta scores: E(): 8.4e-13, 46.22% FT id in 106 aa" FT /protein_id="CAE31604.1" FT /translation="MNAIFITPAGETLHVEVAEGDSLMHAATFAGVPGILGECGGSCSC FT ATCHVFVEQPALDALEPMGTAEAEALEWTAEPRRHNSRLCCQLRMSAALEGITVRIADT FT QN" FT misc_feature 1191379..1191639 FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 5.6e-05" FT misc_feature 1191478..1191510 FT /note="PS00814 Adrenodoxin family, iron-sulfur binding FT region signature." FT misc_feature 1191496..1191513 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 1191692..1192942 FT /transl_table=11 FT /locus_tag="BB1107" FT /product="ferredoxin reductase" FT /note="Similar to Pseudomonas putida putidaredoxin FT reductase CamA SWALL:CAMA_PSEPU (SWALL:P16640) (422 aa) FT fasta scores: E(): 8.9e-64, 49.26% id in 408 aa, and to FT Acinetobacter sp. EB104 ferredoxin reductase NonO FT SWALL:Q93SX2 (EMBL:AJ311718) (401 aa) fasta scores: E(): FT 3.3e-62, 50% id in 400 aa" FT /protein_id="CAE31605.1" FT /translation="MQHAPVIQQDAPGLVVVGAGCAGVEAAFAARNAGWQGPITLLGEE FT SAEPYHRPPLSKAFLQGTAGIDSLGLKQAALYERAAIARIGATRVTRIDRAARRLHCAD FT GRTLPYGKLVLACGGRARRLDEALAEGGGHVHYLRTLDDARGLRARLEHSRRVVIVGAG FT YVGLEVASACRALGLAVTVLEAAPRVLARVTAPVVSAFYEATHRGQGVDLLLDTGVAAL FT EPAGDGGVAAVHTSDGQRIPTDLVIAGIGLAPNVELAREAGLAVGDGIVVDAMLRTEDP FT DILAIGDCALAYNPRYGRAMRIESVPNALEHARQAAATVCGKPRELDPLPWFWSDQYGL FT KLKMAGVAHGHDQVVVRGDPRQGAFSVFYLKSGQLLAVDTVNRPGEFMAARKLIFSTIG FT QADRLADETRELKHWLA" FT misc_feature 1191728..1192588 FT /note="HMMPfam hit to PF00070, DE Pyridine FT nucleotide-disulphide oxidoreductase, score 8.3e-69" FT CDS 1192972..1193877 FT /transl_table=11 FT /gene="dapA" FT /locus_tag="BB1108" FT /product="putative dihydrodipicolinate synthase" FT /EC_number="4.2.1.52" FT /note="Similar to Escherichia coli dihydrodipicolinate FT synthase DapA or b2478 SWALL:DAPA_ECOLI (SWALL:P05640) (292 FT aa) fasta scores: E(): 1.8e-23, 32.98% id in 285 aa, and to FT Xanthomonas axonopodis dihydroxydipicolinate synthase DapA FT or xac1760 SWALL:AAM36624 (EMBL:AE011807) (302 aa) fasta FT scores: E(): 7.7e-28, 40.22% id in 261 aa" FT /protein_id="CAE31606.1" FT /translation="MIDATSLRGILTALPTPVDAQGVVDTRAARLLVEYQLRHGIDGLV FT PIGGTGEYGSLARAERCRMVEATAQAAQGKVPVVAGVLDTGYFDALQSGRELAAAGADA FT LMVVTPYYTNPTQAGLLDYFLRYADESPVPLIIYEIPYRTRIALAPEVLHQLSSHERII FT GMKACNTDMYHFLRVVAGVSDTFSVLSGEDTLLPLHLLGGARGGIVVTATMLPAAWLQL FT FQLATSGRGAEALALHRELMPVMDLAFAETNPGPLKAVWDLIGIEAPDVLAPLREAAPE FT LQAALRACMASMVQRFGQVA" FT misc_feature 1192987..1193853 FT /note="HMMPfam hit to PF00701, DE Dihydrodipicolinate FT synthetase family, score 3.1e-62" FT CDS 1193874..1195067 FT /transl_table=11 FT /gene="lldD" FT /gene_synonym="lctD" FT /locus_tag="BB1109" FT /product="FMN-dependent dehydrogenase" FT /EC_number="1.1.2.3" FT /note="Similar to Escherichia coli L-lactate dehydrogenase FT LldD or LctD or b3605 SWALL:LLDD_ECOLI (SWALL:P33232) (396 FT aa) fasta scores: E(): 1e-45, 38.56% id in 376 aa, and to FT Pseudomonas putida l MdlB SWALL:MDLB_PSEPU (SWALL:P20932) FT (393 aa) fasta scores: E(): 2.8e-62, 48.08% id in 391 aa" FT /protein_id="CAE31607.1" FT /translation="MSARPGLESALACVHDYRSLARRRLSRFAFDYLEGGAEDGRTLRR FT NLAAYGKLVFNPRVLTDVSAVDTRVPVLGREQHSPMIVGPTGLNGLYWPRADEALARAA FT HAAGLPFVLSTASTSLIEDVRAASAGDLWLQLYVQTDRSIAETMMRRAREARFSTLMVT FT VDTPVHGTRDHDVRNGFRLPLRPGPRLMLDFAAHPRWCLRMLRQRGGPQLVNLARSMGE FT QASLNRQAAAMSRQMDMGLGWDALPWLRRHWQGPVLVKGILSVEDARLALRHGADGIVL FT SNHGGRQLEGAPSALEVLPRVMDAVGTRLAVLVDGGVRRGSDVAKARALGAQAVLLGRA FT PLYGLAARGPRGVAEVLAILQRELETTLRLVGCPAARRLGDHALLPVRDDPAQETAP" FT misc_feature 1193934..1195031 FT /note="HMMPfam hit to PF01070, DE FMN-dependent FT dehydrogenase, score 8.1e-151" FT misc_feature 1194717..1194737 FT /note="PS00557 FMN-dependent alpha-hydroxy acid FT dehydrogenases active site." FT CDS 1195064..1195666 FT /transl_table=11 FT /locus_tag="BB1110" FT /product="conserved hypothetical protein" FT /note="Similar to Bacillus halodurans hypothetical protein FT Bh2278 SWALL:YM78_BACHD (SWALL:Q9KAK9) (209 aa) fasta FT scores: E(): 2.3e-22, 38.07% id in 197 aa, and to FT Agrobacterium tumefaciens hypothetical protein atu5415 or FT agr_pat_605 SWALL:Q8UJR1 (EMBL:AE008962) (235 aa) fasta FT scores: E(): 4.6e-22, 35.46% id in 203 aa" FT /protein_id="CAE31608.1" FT /translation="MTHAHASLDLGRFDHDQRYKFLMASVVPRPIALVTSLGEDGVLNA FT APFSSYVVLSIDPPMLGISVAFRDDGACKDTRRNIERSGEFVINSVTADMVAQVQQCGQ FT AYPSDVSEAQAAGLTAIASQVVSVPRIAQSPLQFECRLRHCVEFGQRRSALLVGEVVLA FT HAAVGLAQAHRVDPAVLNAAGRLAGTTYCRVSDTITV" FT CDS 1195719..1196555 FT /transl_table=11 FT /locus_tag="BB1111" FT /product="IclR-family transcriptional regulator" FT /note="Similar to Alcaligenes eutrophus hypothetical 30.8 FT kDa protein SWALL:Q9L789 (EMBL:AF225972) (279 aa) fasta FT scores: E(): 3.8e-36, 41.69% id in 259 aa, and to Ralstonia FT solanacearum probable transcription regulator protein FT rsc3411 or rs01720 SWALL:Q8XTY4 (EMBL:AL646075) (262 aa) FT fasta scores: E(): 5.9e-32, 39.76% id in 254 aa" FT /protein_id="CAE31609.1" FT /translation="MPSEPAKPTSLPPPAHAVDGDDSPLYVQAIARAFQVLQAFDGPRR FT EITLADIAKAAGMGRSAVQRVVYTLESLGYLARVPDSKNYRLTSRLLQFSYNYVRNNEL FT IAKALPYLQELNRTFDETINLQELDGTEIVLVARFLSRHLMNIEVAVGSRLPAFCTASG FT TAILSRLPEKECDAILRASRRVALTPSTELDLDRLRQRIRTAAARGYSIVANESVVGDI FT SLAAPVLDQGGWPVAAVNISVPVARWTVEQAETELANHVQATAMMLSGAKISPFMG" FT misc_feature 1195857..1195922 FT /note="Predicted helix-turn-helix motif with score FT 1780.000, SD 5.25 at aa 63-84, sequence FT ITLADIAKAAGMGRSAVQRVVY" FT misc_feature 1195971..1196531 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 2.9e-38" FT misc_feature 1196343..1196408 FT /note="PS01051 Bacterial regulatory proteins, iclR family FT signature." FT CDS 1196612..1197532 FT /transl_table=11 FT /locus_tag="BB1112" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli cyn operon FT transcriptional activator CynR or b0338 SWALL:CYNR_ECOLI FT (SWALL:P27111) (311 aa) fasta scores: E(): 1.2e-13, 28.91% FT id in 294 aa, and to Pseudomonas aeruginosa probable FT transcriptional regulator pa2206 SWALL:Q9I1R1 FT (EMBL:AE004647) (315 aa) fasta scores: E(): 1.1e-14, 27.33% FT id in 289 aa" FT /protein_id="CAE31610.1" FT /translation="MRIEDLAIFTAVHDYGSFQKAADVHGLTQSAVTKIVRRLETHYGM FT ALVERGARTTLTQAGRALYDRAVELLKIANTIERDLLSEDAASLGTLRMGAVPALLELL FT VLPAAALLLRRYAHASLTTRVKLTSELVDLVIDGRLDLAVGFEASSLPEDIVAASLGRQ FT HYKLVVRAGGPLAGRRLSLQALADCEWLLPSRDIALRRQLDRHFEDAGLNPPRVRLETD FT TSAMLFAPLIRETDLIAIMAEQSYLQAASRDIAALDTALPPIHGDVMLYYRRQTPSTPM FT FAEALGLLRANAAACFGHAGLAPGA" FT misc_feature 1196618..1196794 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 5.8e-15" FT misc_feature 1196657..1196722 FT /note="Predicted helix-turn-helix motif with score FT 1628.000, SD 4.73 at aa 16-37, sequence FT GSFQKAADVHGLTQSAVTKIVR" FT misc_feature 1196660..1196752 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1196864..1197493 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 3.5e-27" FT CDS 1197704..1198501 FT /transl_table=11 FT /locus_tag="BB1113" FT /product="probable short chain dehydrogenase" FT /note="Similar to Rhizobium loti probable short chain FT dehydrogenase mll1981 SWALL:Q98JE4 (EMBL:AP002998) (258 aa) FT fasta scores: E(): 7.9e-21, 39.83% id in 246 aa, and to FT Caulobacter crescentus oxidoreductase, short-chain FT dehydrogenase/reductase family cc2655 SWALL:Q9A514 FT (EMBL:AE005933) (267 aa) fasta scores: E(): 8.9e-22, 39.39% FT id in 264 aa" FT /protein_id="CAE31611.1" FT /translation="MSEALRGRRAVVTGAASGIGLATAQRLARSGASVAMVYLPGDERG FT AAMCRQLEAEGCSVFAAPGDVTQEAGILATIEAAAQAMGGIDLLVNSAGIPGVKAVVPA FT ARLDLITGDIWDAVLAVNVKGPFFCAKAAAPHLKRAGGAIVNIASLAGLDSPGSSLPYA FT ASKAAVINMTKNLARALAPEVRVNAVAPGYVDTGWQIEGWAERGEVSRRLSLLDKVCSA FT DDVAGLIEYLGFSATLTTGETVKVDGGFWLTDARTGQQRLAQI" FT misc_feature 1197704..1197775 FT /note="Signal peptide predicted for BB1113 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.800) with cleavage site FT probability 0.507 between residues 24 and 25" FT misc_feature 1197719..1198453 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 9.3e-61" FT misc_feature 1198148..1198234 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 1198536..1199513 FT /transl_table=11 FT /locus_tag="BB1114" FT /product="putative exported protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 35.6 FT kDa protein in gbd 5'region precursor SWALL:YGB7_ALCEU FT (SWALL:Q44018) (327 aa) fasta scores: E(): 3.6e-39, 39.62% FT id in 318 aa, and to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 5.8e-25, 34.16% id in 281 aa" FT /protein_id="CAE31612.1" FT /translation="MMKTMTKRWLGAGVAAASMMAGAGAYAADYPQRPITLVVPYAAGG FT TTDILGRALAEALAGELKQAVVVENKPGANGTRGASGMKQARPDGYTLTMVPLGVFRQP FT YIQQVNYDPLKDLTYVSMVGGYNYAIAVADKAPWKTIQELIEHARSHPGEIFYGVSARY FT SVNEFLMMDLGRKAGVDWTSVPFKGDSEAVTNLLGGQIQVVSATNTILPFAQQGSVRVL FT ATAGEARSPDFPDAPTLAEAGYPVTVTSPLGIAGPAGMAPETVRILDEAIARAARNPKL FT LETAARYGIGVKYLDHAGYTAYAHKAAVEEKDAVALMLQGAAKP" FT misc_feature 1198536..1198616 FT /note="Signal peptide predicted for BB1114 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.987 between residues 27 and 28" FT misc_feature 1198683..1199504 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 7.3e-42" FT CDS 1199515..1200342 FT /transl_table=11 FT /locus_tag="BB1115" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE31613.1" FT /translation="MADPRNAGPGDGRLYRMPTAFGPALGPRQAPAGMRHDPAASPRKS FT CAYAAWRTDAGLLGGLLPPGFALRGEAVVVFEFSYMTDIAWLAGRGYNMLTVRIPATYR FT HGDTSVDGYFQPVVWENLTEPILSGREELGWAKIYADLPAATHEHDEIVCRAEWMGFRF FT LELRLGARAAGGGALQSGPVLHRKYIPATQHWGQADVDYVTLTPGGGSQARLLDSATAQ FT RCALRIARPRWEDMPTQHAIVGALADLPLLECVRAGTYQTVGGKDLSDQVRLG" FT CDS complement(1200356..1201288) FT /transl_table=11 FT /locus_tag="BB1116" FT /product="nitrilase" FT /EC_number="3.5.5.1" FT /note="Similar to Klebsiella pneumoniae nitrilase, FT bromoxynil-specific Bxn SWALL:NRLB_KLEPO (SWALL:P10045) FT (349 aa) fasta scores: E(): 4.4e-25, 34.5% id in 313 aa, FT and to Nicotiana tabacum nitrilase 4 Nit4 SWALL:NRL4_TOBAC FT (SWALL:Q42965) (349 aa) fasta scores: E(): 3.9e-68, 53.72% FT id in 309 aa" FT /protein_id="CAE31614.1" FT /translation="MTTHRIAVIQDGPVPGDAMATAEKMSRLAASAKAQGARLALFPEA FT FVGGYPKGADFHIFLGGRTPQGRAQYQRYAETAIAVPGPVTERIGQIAAEQDMFIVVGV FT IERDGGTLYCTILFFSPEGELLGKHRKLMPTALERLLWGYGDGSTFPVYDTPLGKLGAV FT VCWENYMPLLRMAMYGKQIQIYCAPTADDKPTWVSTMQHVALEGRCFVLSACQHLRGKD FT FPPEFHNALDVQPDTVLMRGGSCIVDPMGQLLAGPVYDEDAILVADIDLDAVTRGKMDF FT DVVGHYARPDIFSLTVDERPKPPVTTLKP" FT misc_feature complement(1200410..1201282) FT /note="HMMPfam hit to PF00795, DE Carbon-nitrogen FT hydrolase, score 4.9e-100" FT misc_feature complement(1200767..1200808) FT /note="PS00921 Nitrilases / cyanide hydratase active site FT signature." FT CDS complement(1201330..1201692) FT /transl_table=11 FT /locus_tag="BB1117" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces olivaceus ElmJ SWALL:Q9L4X8 FT (EMBL:AF263463) (143 aa) fasta scores: E(): 0.0082, 30.47% FT id in 105 aa, and to Xanthomonas campestris hypothetical FT protein Xcc2241 SWALL:AAM41520 (EMBL:AE012331) (135 aa) FT fasta scores: E(): 0.027, 33.01% id in 106 aa" FT /protein_id="CAE31615.1" FT /translation="MVKLADGTHLYPVRNRQRYGERPGFKITELILEHGQEVPWHRHTT FT VIDTFYVIEGALRVAAAEPSQEVVLGPAQVFQVLAGRPHRVTSASAAPARFLVIGDAQG FT AGLYDFEPVAAPGDAP" FT CDS complement(1201732..1202700) FT /transl_table=11 FT /locus_tag="BB1118" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus, and Burkholderia FT cepacia 2,4-diphenoxyacetic acid gene cluster SWALL:Q9RHQ7 FT (EMBL:AB028643) (337 aa) fasta scores: E(): 1e-33, 37.83% FT id in 296 aa, and to Comamonas testosteroni Orf4 protein FT SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): FT 3.6e-32, 36.57% id in 309 aa" FT /protein_id="CAE31616.1" FT /translation="MLKLPILAGMFVAALAMHDAQAGAYPEQPIKLVVGWPPGGATDGN FT ARLLAQALGQRLGQPVIVENRPGAGGSIGGAAVAKAAPDGYTLAYISSSNVITSLLLKQ FT PTYGAGRDLEPVSLVAAEPLVLLVNAASPARTLAEFVEQSRRAQRGLNYATTGKGGILH FT LAGAALVRDAGLSAVDIPYNGTAPAMTALMSGQVEFLFGTFSDALPMVKGGRVKALAVA FT AEARSPLIPDVPTLTEALGRPNAERGTYQAVLAPRGTPEAIVRQLSSEIDQVLGDAAIR FT AQLAGRGVTPVGGPPTVLGQRIDNELDQRGQLIGELGIKPN" FT misc_feature complement(1201744..1202565) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 5.9e-87" FT misc_feature complement(1202635..1202700) FT /note="Signal peptide predicted for BB1118 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.844 between residues 22 and 23" FT CDS 1202922..1203815 FT /transl_table=11 FT /locus_tag="BB1119" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Bacillus subtilis als operon regulatory FT protein AlsR SWALL:ALSR_BACSU (SWALL:Q04778) (302 aa) fasta FT scores: E(): 5.4e-36, 36.36% id in 286 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT pa5029 SWALL:Q9HUE0 (EMBL:AE004916) (301 aa) fasta scores: FT E(): 1.7e-36, 40.34% id in 290 aa" FT /protein_id="CAE31617.1" FT /translation="MNLRHVHYFVTLAEELNFTRAAARCHIEQAPLSRAIKALERELGL FT TLLIRNTRNVELTPAGRLFCDCARVALEELELGARRARRAQEGAIGQLTIAHVGSTVYE FT LLPSIIRAFKRGYPLVDLRIRQLTTREQIPGLIAGDIDVGFVRVAPDSGQLAAARLYAE FT PFVCAIPDWHPLAGRESVALGELASSPFIMLMRSPAPSLHQQVLDLCRKAGFEPRIAQE FT VEQIESTVGLVASGIGVALVPASLRKLSIRSVCYVPLCDVAEQVEVWVAWPREQASPVA FT QAFLQCARDTLPDPRA" FT misc_feature 1202928..1203107 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.7e-26" FT misc_feature 1202967..1203032 FT /note="Predicted helix-turn-helix motif with score FT 1428.000, SD 4.05 at aa 16-37, sequence FT LNFTRAAARCHIEQAPLSRAIK" FT misc_feature 1202970..1203062 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1203177..1203800 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 4.3e-52" FT CDS complement(1203831..1204457) FT /transl_table=11 FT /locus_tag="BB1120" FT /product="two-component system response regulator" FT /note="Similar to Ralstonia solanacearum VsrD SWALL:Q45416 FT (EMBL:U18135) (210 aa) fasta scores: E(): 2.2e-29, 42.85% FT id in 210 aa, and to Ralstonia solanacearum response FT regulator transcription regulator protein VsrD or rsc0292 FT or rs03259 SWALL:Q8Y2P3 (EMBL:AL646058) (210 aa) fasta FT scores: E(): 2.5e-29, 42.85% id in 210 aa" FT /protein_id="CAE31618.1" FT /translation="MIRVLIVDDHTIFRDGLKRLLAEEDDISVTGETADASDALRLLRA FT HSYDVVLLDVNLRGRSGLDVLPSIRAEWPRLPVIVLSMYPAEQYALRAFEVGASGYVAK FT DMDYKALTLAIRQAASGGRYFPAEISDKAVSAMARGEDLHDKLSPREHQIMMLMVQGTR FT LTDIATQLIVSVKTISTYRQRILQKLKVGSNAELVQYAIRHRLID" FT misc_feature complement(1203837..1204028) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00196, DE Bacterial regulatory FT proteins, luxR family, score 5.1e-15" FT misc_feature complement(1203909..1203974) FT /note="Predicted helix-turn-helix motif with score FT 1264.000, SD 3.49 at aa 162-183, sequence FT TRLTDIATQLIVSVKTISTYRQ" FT misc_feature complement(1204089..1204454) FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 2e-36" FT CDS complement(1204477..1205466) FT /transl_table=11 FT /locus_tag="BB1121" FT /product="putative exported protein" FT /protein_id="CAE31619.1" FT /translation="MQRRSFIKLGGAATVAAGAAALGLPSAARAADAFPAKPIRVLVGF FT SAGGVTDIVVRALAESASNIFGQPIIVENKLGAGGVMPAYQLQTAAPDGYTVGLIAHSV FT FRLPYIANIKWNPVTDLDYVIRLTGFTWGLVVAADSPIKTFDDYVAYARQNPGKLTYGT FT VGSLTTQHLTMEQISASLGIQLSNIPYKGVAEALPALMGGHIMSVADASSWVPYVTSGK FT MRLLVVWTEKRVPRFPDVPTLREVGIDMVQTSPWGLAAPKGTPPQVIARLHDGFRQAMA FT QKPFQDALANYDMEQQYLDGPAYRQFAQESVEKENRILASLNVPRGGQ" FT misc_feature complement(1204495..1205307) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 6.1e-101" FT misc_feature complement(1205377..1205466) FT /note="Signal peptide predicted for BB1121 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.936 between residues 30 and 31" FT CDS 1205622..1206719 FT /transl_table=11 FT /locus_tag="BB1122" FT /product="two-component system sensor kinase" FT /protein_id="CAE31620.1" FT /translation="MHDFRWPLDQDDANYRLLFEGLIEQSVAGIYLLQNAHLVYVNEAF FT ARMCGVPREKLIGRPLARVAPPQQRESLLQQYERRLTGGDKDATFMVHVQRPDGQPVAI FT EIHGRLIDFRGQPAVIGVGIDATLRLRRQEELQQSRAALSELVSHIESVREAERQRIAM FT ELHDAVGGMLSALKFDMSRLARHIDRTLGGPGQDERRAQLEGVVGECLGLVQDTIATVR FT QISEDLHPSALPHLGLAAAIANHLRQFEARYGIACRYAGETGELGLDMEAMGHLYRIFQ FT ESMTNVAKHAQASEVQVRLGRDAATLVLSVRDNGVGLSGDDRRPGAYGLLGMRERARRL FT GGTLSVGAAPEGGTVLTVEIPAPGG" FT misc_feature 1205670..1205864 FT /note="HMMPfam hit to PF00989, DE PAS domain, score FT 8.1e-07" FT misc_feature 1206432..1206710 FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 4.5e-20" FT CDS complement(1206716..1207504) FT /transl_table=11 FT /locus_tag="BB1123" FT /product="putative enoyl-CoA hydratase" FT /protein_id="CAE31621.1" FT /translation="MEAIKQAGEVRLERDGPLCIITVDNAAKKNAFSPEMMDQLARHLT FT AFEEDDSLWVAVLCAAGEHTTAGLDMPKFFGPDATAKPRPDAWVDPFGLKRRTTKPVIA FT VVQGITFTIGIEIMLACDIVVAADTARFGQLESRRGIAPLGGAHFRYLTRTGWGNAMYH FT LFLCEEFGAQRALELGFVQEVVPYGQHIERALDLARRICRNAPLGIRATKQAALAYLEG FT GEQAAIACIPEIRAKVFASEDFKEGIQSFIERRDARFQGR" FT misc_feature complement(1206947..1207450) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 1.8e-25" FT CDS complement(1207524..1208321) FT /transl_table=11 FT /locus_tag="BB1124" FT /product="putative enoyl-CoA hydratase/isomerase" FT /protein_id="CAE31622.1" FT /translation="MSYEFIRVEHLGPVCRIYLNRPEVRNAQSRSLLRELDDAVRAAEA FT DDAVRVLIIGAVGDHFSAGHDLKSARVERPNPTVEERWEYEEEHFLEYCLRIHDLKKPT FT IAQVQGACIAGGYMVANMCDLIVCADNAFFSDPVAHSMGTASLEVLIHPWVMGMRKAKE FT LIFTGARLPAAEALQIGMINRVVPLAELEQATLELANTIAAAPPYGLRFTKRSLNRTWD FT AQGFRAAVQAHFDVHQLSHVTEEFQAHLKRGLDSTIKRAKAVS" FT misc_feature complement(1207761..1208279) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 1.3e-28" FT CDS complement(1208331..1210208) FT /transl_table=11 FT /locus_tag="BB1125" FT /product="putative long-chain-fatty-acid-CoA ligase" FT /protein_id="CAE31623.1" FT /translation="MEIPRYWVRADLSTAERIRQFEAVPLHERGLPDSTYAFLARGCRQ FT APRATAIRYLPDPAACHEREDIDFGRLLERVHQTANLIHAEGVGPREVVSLLLPNTPQG FT QYALWGGQAAAIVNPINWMLEPEAIAAIVRAADARMLMAYGGDAQLDIWDKVLRVAELC FT PQLRTIVRLGGSRAGAAPAGRRFLDYDAVIDGYRADALDFARAIGPHDLAALFPTGGTT FT GDPKLVRHSHWNEVVSAWLSAAVAGIVEGESRLSATPLYHVVGAFAGSLATLARGGTLV FT LATSVGWKHPQLLARIWEVVQACQVNYLTIVPTIMNQLVQMPIGGHDISCVKGVLSGSA FT PLSENVARRFLALTGLPVREGYGMTETTSVCMMNPRGGPVKTGSVGLLFPYHRARVARL FT EPGAAPRDCAPGETGVLALQGPTVFDGYAAGAQGGFLEPGWLDTGDVARIDADGYIWIA FT GRTKDLIIRGGHNIDPKAVEEAFYRHPQVLEAAVVARPDGYAGEVPVAYVQLVDGADLD FT AARLLAEVRPDIAERAAVPKDCYLMAALPKSPVGKILKHRLREDAMLRGFEKALRGAGI FT ETGYALALADGPAVRIRLLVPGLAPQQVRDALATFTIPYFIETADPAAV" FT misc_feature complement(1208733..1210007) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 6.6e-73" FT misc_feature complement(1209531..1209566) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(1210235..1212022) FT /transl_table=11 FT /locus_tag="BB1126" FT /product="probable acyl-CoA dehydrogenase" FT /protein_id="CAE31624.1" FT /translation="MKDGLYTAPQRDMQFALYDVLDIEGELARRAAPMAIDRETLDQVI FT EGADRLCHGVLAPLNASGDRAGCRLEGHEVRTPAGFVEAYRAYAEGGWSGLCASPDHGG FT QGLPTVASAIVGEMLGATNISFALYPRLSEGAYRCIRANASAALQAIYAPRLASGEWTG FT TMCLTESQAGTDLGLLRTRAEPDGDGAYRISGSKMFISSGEHDLASNIVHMVLARLPDA FT PAGTRGISLFVVPKRLPDAQGEPGERNGVYCDAIEHKLGLHANATCVLRFENARGYLVG FT EPNKGLAAMFVMMNSARLGTGAQALGLTETALQKSLAYAAERLQSRAPGHEKAITRADP FT IILQPDVRRMLLTQQAWAQGARMFLYWLALQIDTELHAADPAERDRAGGLLSLLTPVAK FT AFVSDNAVESVNLAVQVHGGSGYIVESGIEQTLRDVRILPIYEGTNGVQAHDLLARKVL FT ADQGARLSQLLAMAQAQAAAVSAVEGGARFGQPLRELAGQVADAVPRLAELAARDPAQV FT GASSTDFLRLVGHLVYGYFWSRAAQTALTRLPEDDPLRAEKLATARFYFEHLFPETEMR FT LRRLFVPADCLTTPCALAA" FT misc_feature complement(1210430..1210477) FT /note="PS00012 Phosphopantetheine attachment site." FT misc_feature complement(1210649..1211173) FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 8.2e-45" FT misc_feature complement(1211183..1211527) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 1.5e-13" FT CDS 1212140..1213360 FT /transl_table=11 FT /locus_tag="BB1127" FT /product="conserved hypothetical protein" FT /protein_id="CAE31625.1" FT /translation="MDEGIAAAARALALGDALAALNQVALRDDAPALALRGIALAQLGD FT FDRARALVRRAARAFGPGNAVARARCALAEGEIALAARDLAWPGAALRAAQGTLAAHGD FT WRNAAYAQYLEVRRLLLVGELERAAEWLERLERPFLPHDLRAIHDLLAAGLAMRQLRAG FT AARAALARAAQAARHAAIAPLAAEVARAASLLDAPVAQVRSRGGERPARLDEVEALLAG FT PVLVVDACRYVVCAGAARTVLSRRPVLFALARALAEAWPGEVAREALIDQVFRTRVPDE FT SHRARLRVEIGRLRAALRGMAAPRATGRGYVLAPDGARQVAVLAQPVQTPHAAVLALLA FT DGQAWSSSALALALDASQRSVQRALQALAAAGRAQALGRGRTRRWVAAPAAAFATNLLL FT CTALPAF" FT misc_feature 1213172..1213237 FT /note="Predicted helix-turn-helix motif with score FT 1141.000, SD 3.07 at aa 345-366, sequence FT WSSSALALALDASQRSVQRALQ" FT CDS 1213396..1214034 FT /transl_table=11 FT /locus_tag="BB1128" FT /product="conserved hypothetical protein" FT /protein_id="CAE31626.1" FT /translation="MKRSPAHIVREYGPFAGVEQVHGLTYDGRHVWFAVGDSLAALEPE FT SGEVARRIDVPAQAGTAFDGRHLFQIAGDVIQKIDPASGRVLGTIAAPPGGCNSGLAWA FT EGMLWVGQYQPRQILQLDPATGAILRTLQSDRYVTGVTWVDAQLWHGTWEDGTADLRRV FT DPATGEVLQVLEMPAGAGLSGLESDGAQRFFCGGGDRAVVRVVRRPAAE" FT CDS complement(1214054..1214647) FT /transl_table=11 FT /locus_tag="BB1129" FT /product="conserved hypothetical protein" FT /protein_id="CAE31627.1" FT /translation="MTDDAARQAQARLDAWRERGGEQADPLRFHYLQALARRAAGHEGQ FT ARQLLDERLAGLMAACPETAAAAPPAGPDPARAPGPLGQLCAQIAAAAPARPAYPELPL FT LDEFRQAWTRLSTDRQLRQSEQLVPENAGPLNSSHLAHRSLALMQGLSPGYLQQFLSYV FT DALGWLEQLTANAAPAARDTARATPRKTARARSR" FT CDS complement(1214640..1215287) FT /transl_table=11 FT /locus_tag="BB1130" FT /product="probable outer membrane protein" FT /protein_id="CAE31628.1" FT /translation="MNEHLDAGPDAAVPTWAVFGDLMSVLLGAFVLILVGVVGMQIELS FT TRLEAEVEQRQAETQRREALEQALAAPLAAGRVTLVDGRIGISGNVLFALNSDQLQPEG FT REILASLVAPLSAYLRAHDEILMVSGFTDDQQVHQGNRRYADNWELSAQRALTVTRALI FT DAGIPAASVFAAAFGAEQPVASNADETGRAQNRRVEIAPIPRQSADKVPARD" FT misc_feature complement(1214700..1215014) FT /note="HMMPfam hit to PF00691, DE OmpA family, score FT 2.3e-19" FT misc_feature complement(1215177..1215245) FT /note="1 probable transmembrane helix predicted for BB1130 FT by TMHMM2.0 at aa 15-37" FT CDS complement(1215284..1217917) FT /transl_table=11 FT /locus_tag="BB1131" FT /product="putative membrane protein" FT /protein_id="CAE31629.1" FT /translation="MIRTLINIAVFLAGLGAVCRIGAGYVGSNPLGLAITALVGIIYLA FT GALELYRYQRATATLDHALAATTEPPADLAAWLAPLHPSLRNATRLRIAGERVALPGPA FT LTPYLVGLLVLLGMLGTFLGMVATLRGTGIALESATDLQAIRASLAAPVKGLGFAFGTS FT VAGVAASAMLGLLSALCRRERIQAGQALDARIASTLRPHSLAHQREASFQLLQRQAEGM FT PALVDRLQAMLAAMAQHSQAVNDGLAQQSRQLTDALTRQSQTLADTLTRQSDTLAERLD FT RQSQTLASSLDEQSRRLGASLGEHSQTLAASLTRQSDTLSDTVARQSSTLAQTLTQQGE FT SLAATLTQQGAALSDGLARQGDTLAATLTGQNASLATALTQQGESLASTLAGETRELAA FT RLDQQGRTVADALGQHSQAMAERLAAGQDAFHEKAAQAYTGLAASVRQTLNDSVAASAQ FT AAGAAIQPAVQATLAGLASETAAWRETIGQAVQQQLAELSGRFEASTAGVAGIWNDALA FT RHQQASESLAESLRSAQQQLAAHFEQRSAALLDTVAARLQGATDEVRDGWRDAVTRQEQ FT AAAALASQQGQTVAEAAGAFARHTAELLHAVEQSQTQLQAELAARDAQRESAWTHALEA FT MAAQLRTAWQETGAQTAEQQREICATLAQTAQDISSQSREHATRTVAEIGQLLEAAAQA FT PRAAADVVAELRQKLVDSMERDNAMLEERSRLLATVETLLGAVNHASSEQREAIDALVA FT SSADLLERVGARFADSIESGAGRLEAASAQATASAADVASLGEAFGAAAQVFGAANDRL FT AEQLGRIETALDKSLARSDEQLAYYVAQAREVVDLSVLSQKQILEDLQRLAQQPEPAGA FT EAAETP" FT misc_feature complement(join(1217558..1217626,1217759..1217827, FT 1217837..1217905)) FT /note="3 probable transmembrane helices predicted for FT BB1131 by TMHMM2.0 at aa 5-27, 31-53 and 98-120" FT misc_feature complement(1217834..1217917) FT /note="Signal peptide predicted for BB1131 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.917) with cleavage site FT probability 0.505 between residues 28 and 29" FT CDS complement(1217928..1218656) FT /transl_table=11 FT /locus_tag="BB1132" FT /product="conserved hypothetical protein" FT /protein_id="CAE31630.1" FT /translation="MVQVPQRTGFSGPTLVRLLTRLTEVDAPESRQSLADRLSHWLGWT FT DAIALSAALNGEPPAVPRGQSADGSAEAQECERVRATLIEAIAGKGRNAAARNRARAPA FT RPAPRDEDVEYTEYRQRYQALQQTMENTIAVLRGRLRAALAARAPAHTRLAVVDAIMER FT SLGARERTLLAAVPTLLERHFERLRQAALAGPQEAGDAAPPQPGAWLATFGRDMRSVLL FT AELDIRLQPVEGLLAALRAS" FT CDS 1218876..1219505 FT /transl_table=11 FT /locus_tag="BB1133" FT /product="hypothetical protein" FT /protein_id="CAE31631.1" FT /translation="MNPAIAAGRRLADYVLPDHTKTLRRLSALQGDDPMLLVLIRGFFC FT PKDREQLKALTRFHPQLVVGNCRLVVITTDDWHTTNNLRQQLGAHYPFLYDEERRVRDD FT LDILEYTDPQHEPMVPHTLLLAPGLEIRRIWNGYYYWGRPSTAELHDALREVTRDIRPD FT WDLSDPELKRRWAAGDKSAFFPYGSKSMEQTLKEMAGAVDQYAGRA" FT CDS 1219610..1220116 FT /transl_table=11 FT /locus_tag="BB1134" FT /product="conserved hypothetical protein" FT /protein_id="CAE31632.1" FT /translation="MTRKTLQELFIHELSDIYSAEKQLTKALPKMARSASDPKLAEAFS FT AHLEETRGQVERIDQIVEGSDLRLKRMKCAAMEGLVEEGKEVMDEIEPGPVLDAALIAA FT AQKVEHYEIASYGTLCTFAKQLGETKALALLKETLAEEKATDEKLSMLALKQVNADAAA FT AGKAK" FT CDS complement(1220123..1220512) FT /transl_table=11 FT /locus_tag="BB1135" FT /product="hypothetical protein" FT /protein_id="CAE31633.1" FT /translation="MKRDDNATVDGACVRFTLQSPHGPTVVAVTAKALVEHCGADNNEP FT GLLQGYRAHWPRIHAIARQLAPSTLDGGVRVTASDLANARSTPMSDSKDHRAAPARKPA FT RIAGQPDVDSAAPRAGHKPAGAKRR" FT CDS complement(1220571..1221650) FT /transl_table=11 FT /locus_tag="BB1136" FT /product="putative calcium/proton antiporter" FT /protein_id="CAE31634.1" FT /translation="MIRLLREEKFIVLALLAALADLLPGPWRHAGAAAAMAETAVLMAA FT ILAASLSVVRHAELIARKLGDPYGSMVLTLSAVLVEVIVLGVVSRGGASPELVRDTIYS FT AVILDINGILGLAALIGGFKHGEQAYNDDSARTYGVMILTAVAVSMIIPEFIPSARWRA FT YSVFTIVVMVLLYGVFLRMQTGPHSYFFSYSYPEKNARRRQASVPVRTPRSAGVMIAGI FT AIVGLLAELMSHSMQRGLRGVAVPVGVVPLVIAGISAAPEILTALRAALANRMQSAVNI FT AMGASLSTVILTVPAMEAMALYSGQALRMAMTPLQTVMMLVTLVAVAINLNDGQTNAIE FT GMTHFVLFAAFLMLVALGL" FT misc_feature complement(join(1220577..1220645,1220664..1220732, FT 1220760..1220819,1220856..1220924,1220952..1221020, FT 1221111..1221170,1221180..1221248,1221282..1221350, FT 1221393..1221452,1221489..1221557)) FT /note="10 probable transmembrane helices predicted for FT BB1136 by TMHMM2.0 at aa 32-54, 67-86, 101-123, 135-157, FT 161-180, 211-233, 243-265, 278-297, 307-329 and 336-358" FT misc_feature complement(1221540..1221650) FT /note="Signal peptide predicted for BB1136 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.785 between residues 37 and 38" FT CDS 1221847..1222278 FT /transl_table=11 FT /locus_tag="BB1137" FT /product="conserved hypothetical protein" FT /protein_id="CAE31635.1" FT /translation="MRFMVLVKADRNSEAGVMPEERMLAEMGKFNEALVQAGVMQAGEG FT LHPSSRGARVHFSGKDRKVEHGPFDTPGLIAGFWLWQCASLEEAIDWVKRCPNPMLGDS FT EIEIRQIFEAEDFGAAFTPELREQEARLRQQIEAEARKP" FT CDS 1222337..1223083 FT /transl_table=11 FT /locus_tag="BB1138" FT /product="putative GntR-family transcriptional regulator" FT /protein_id="CAE31636.1" FT /translation="MMSKSNHAPLYARVEAVLAEAIAAGELPPGSQLPAEDGLIARFQV FT SRTTVRKAIQNLAERGLVEIRRGKGTFVAQPRVVQELTELTGFVEDMQALGRVPSARLL FT DAEIVAAGQAVARQLAVAPGTQVMRIRRVRLADGVAMSLDETYLPREIGEQVVTHDLEA FT EPIFALLEQKYDLPLVEAEYRLEAAIATPEVARALAVPPGSPVFLIERTSYCAGPRPID FT YEKLYYRGDLIRFVTRLARRARPVPA" FT misc_feature 1222376..1222555 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.6e-22" FT misc_feature 1222433..1222507 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS 1223080..1223934 FT /transl_table=11 FT /locus_tag="BB1139" FT /product="putative membrane protein" FT /protein_id="CAE31637.1" FT /translation="MTVAGLWLFAMALGASALGGMLGMASGIFIVPLLVLWGIDVHAAI FT AASIVSVIACSCGSAAAFLQSGLTHVRLAVVLETATTLGALTGVFLVGAVPVAALYALF FT AVVLVVSAWQMLARRRDPARASGAPACRWAGALRLHGRYRDPAAGRHRRYRVQRLPLGM FT SLMYGAGVLSALLGIGSGVLKIPAMDSALRLPLKVSSATSNFMIGVTAAASAAVYFARG FT EIDPAVAGPVALGSVAGSVLGARILMRVSGERLRLLFVAVLALLAVQMLLMALGVQWPG FT GGR" FT misc_feature 1223080..1223217 FT /note="Signal peptide predicted for BB1139 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.986) with cleavage site FT probability 0.285 between residues 46 and 47" FT misc_feature join(1223122..1223190,1223209..1223277,1223341..1223409, FT 1223560..1223628,1223671..1223739,1223842..1223910) FT /note="6 probable transmembrane helices predicted for FT BB1139 by TMHMM2.0 at aa 15-37, 44-66, 88-110, 161-183, FT 198-220 and 255-277" FT misc_feature 1223326..1223892 FT /note="HMMPfam hit to PF01925, DE Domain of unknown FT function DUF81, score 3.7e-23" FT CDS 1223931..1224227 FT /transl_table=11 FT /locus_tag="BB1140" FT /product="putative membrane protein" FT /protein_id="CAE31638.1" FT /translation="MSARAGAGLEIRLAVLLRAGTWAACLIIAAGLLLGMIDAPAGARV FT VNAGIVLFIALPAARLLAMLAAFARQRDWRYALIVALVLAIMAAGLALGLRAG" FT misc_feature join(1223967..1224035,1224078..1224137,1224156..1224215) FT /note="3 probable transmembrane helices predicted for FT BB1140 by TMHMM2.0 at aa 13-35, 50-69 and 76-95" FT CDS complement(1224228..1224890) FT /transl_table=11 FT /locus_tag="BB1141" FT /product="putative GntR-family transcriptional regulator" FT /protein_id="CAE31639.1" FT /translation="MKVSDRIRQALEADIRNGVLLPGDAIDEQELAARHQVSRTPVREA FT LLQLKVQGILDSQPRGGAVVARMDVQELLAIWELMAEMEGVCTRMACQRMTAEERSELA FT RVHREAAPVAQADDAQAWREANHRFHEVLYHGCRNPYLREQLLALRARTGAYLRHAFIA FT VGRVRASYEQHGELVQAILDHDPERAHRMMMRHISLAQGAKGLADFLINLPRSMVKP" FT misc_feature complement(1224696..1224872) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 8.8e-18" FT CDS 1225152..1226537 FT /transl_table=11 FT /locus_tag="BB1142" FT /product="putative amidase" FT /protein_id="CAE31640.1" FT /translation="MTPAGLPDSIAGLRAQLAAGALDVAQALALQRQACEADGWHCVVA FT LPDDAGEPPPASLPLAGVGLAHKDIFVLPGRVPECGARHPWPDAPVRAATVIRRLAAAG FT SRPLAALAMAEHASGATGENPRYPLPRNPLDADAAVGGSSSGSAVAVAAGLCYGSLGTD FT TAGSVRIPAATCGVVGLMPTRGLLPGDGVAPLAGELDTVGVLARCADDAQAVLHAALDA FT AQAAALDASATPAMERWRIATCWIHPDPAVRLDPAVHAALEDYATECSARGRRREARLA FT ALPQWIRLAQTLLYAGSAAAHAQALRGQAPALGALARNLALTGAAMPPAWAHAALAQRR FT AQVDAFVAEALADSDVLLTPALPGPVPDWSQVLTSSPGFEARRLLDLFCWLSFVNYLGL FT PAIVFPVGRDAAGRPISVQAIARPGGEAMLLALARQAGHSRFGGRGFAQQPGLPLARSR FT ERV" FT misc_feature 1225218..1226441 FT /note="HMMPfam hit to PF01425, DE Amidase, score 3.5e-40" FT misc_feature 1225572..1225667 FT /note="PS00571 Amidases signature." FT CDS 1226540..1227736 FT /transl_table=11 FT /locus_tag="BB1143" FT /product="conserved hypothetical protein" FT /protein_id="CAE31641.1" FT /translation="MPQLSASPALQRFRVLDLSRVRAGPTCVRMLADFGADVIRIEPPP FT GVDPNEAMFAADRWSGDFQNLNRNKRSLTLNLKKPEAMAVLRRLVAGADVVVENWRPDV FT KARLGVDYESLRAINPRIILASISGFGQSGPYAGRPGFDQIAQGMGGLMSVTGLPGQGP FT VRAGLAVADSSTGLYAAIGILTALLEREQSGQGQWVHASLLHAQIAMMDFQAARYLNDG FT DVPAQEGNDHPTSSPMGLFAASDGMFNLGASGEGNWKRFCQVLGQTGWLADPRFQTEKL FT RVRNRRDLNALIGAVFAGGTVAHWVGLLNEAGVPAGPVYTVPQMFDDAQVRHLDVARRC FT QAWQGGERVMITQPVTLARTPADIARTAPGWGEHTDEVLREAGYGEDEIDKLRAAGAV" FT misc_feature 1226756..1227322 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 2.6e-68" FT CDS 1227757..1228560 FT /transl_table=11 FT /locus_tag="BB1144" FT /product="putative enoyl-CoA hydratase" FT /protein_id="CAE31642.1" FT /translation="MSTDTHPPGRLAIDDADGLLRVRIVNPARYNAMSLSMWEALGQAV FT RDAQGRDDLRAIVLEGEGERAFVSGADISEFASQRKDPAQIARYDRAVTQAQQALSESA FT VPTIALVRGICMGGGMGLALACDLRYCNESARFRMPAARLGLGYALDGVKRMCDMLGAA FT RAADLFLTARTFDGAEAGRIGLAHEVFADADFTQAAAERVAAVAGNAPLTLRAARLALR FT HLLGGAHAPSADSVDQAVRTCFDSEDYQEGQAAFREKRPPVFKGR" FT misc_feature 1227814..1228329 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 2.3e-34" FT misc_feature 1228078..1228140 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 1228640..1229617 FT /transl_table=11 FT /locus_tag="BB1145" FT /product="putative exported protein" FT /protein_id="CAE31643.1" FT /translation="MKTLHRTALAVLFSGYAAVAAAQSAQPPAAPQKQVLTIGYVKVGH FT LSPMIFVSEPLKACNVEVKPVEFVRYADARTALLSGSIDVSGIGPADLAIALAQGSDKI FT VGLAGVASSPKYLVTRKGVKMDDWKDLAGKRVGIAPGSAVWFQWAATLAEKGIPYNSFT FT AVNIQGGGTAFVQALQRGDVDAVALWEPFESQLVADGTAFFAKNLEYSQSKAVGAELGL FT LAATREALQTKREAVKCFLWAYQRAEKQLEQDPEAFAQAYSKYTNLPLSVTRESVKLIK FT LGGVLDLDQLRRQAKTFNELGVIPKDVSGQIDKVWDPTLAREVR" FT misc_feature 1228640..1228705 FT /note="Signal peptide predicted for BB1145 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.607 between residues 22 and 23" FT CDS 1229658..1230515 FT /transl_table=11 FT /locus_tag="BB1146" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /protein_id="CAE31644.1" FT /translation="MSSSILKRPAAPAPAAPAGAPAGRALRRLGLGLAVPVLILVVWQL FT VGQSAAMAGVVPTPVQVARAWYAWIFGDPGMGLNPYQGTWVSNVQYSTMRVAQGFALAM FT ATGIPLGLAIGWSRLTSQLLDPLIQGLRPIPITAWLPFSIALFGIRDMGSIFLIFLGGF FT YAIVVNTTQGARDVDRNLVRAASMMGASSGQLMRRVVLPAAMPSIFTGLRIGLGISWTA FT VIVSEMVAVKSGLGYVLWDAYYVGRMDIVLADMVSIGMMGFLSDRLIVAIEHRVLAWRM FT LQNH" FT misc_feature join(1229745..1229813,1229856..1229924,1229943..1230011, FT 1230093..1230161,1230279..1230347,1230405..1230473) FT /note="6 probable transmembrane helices predicted for FT BB1146 by TMHMM2.0 at aa 30-52, 67-89, 96-118, 146-168, FT 208-230 and 250-272" FT misc_feature 1230174..1230389 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 4e-16" FT CDS 1230523..1231272 FT /transl_table=11 FT /locus_tag="BB1147" FT /product="probable ATP-binding component of ABC FT transporter" FT /protein_id="CAE31645.1" FT /translation="MSHISVTQLSKTYPGVTPVHALDQIDLQVAEGEFIALLGPSGCGK FT STLLNLIAGFEAPSGGELRVGGGAVERPGPERGVVFQEAALFPWLNVWENVVFGPKIAG FT LSRREYAARAEEMLEITGLSAFKRHLPVQLSGGMRQRVGIARVLTLGSRVLLMDEPFGA FT LDAQTRLTMQELLLSVWQTLRTTVVFVTHDIDEAILLADTIYVMSARPGRIATRIEVPI FT ERPRSLDLITGEVFNGLKREILKQMRH" FT misc_feature 1230616..1231152 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 5.4e-58" FT misc_feature 1230637..1230660 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1230922..1230966 FT /note="PS00211 ABC transporters family signature." FT CDS 1231294..1232166 FT /transl_table=11 FT /locus_tag="BB1148" FT /product="conserved hypothetical protein" FT /protein_id="CAE31646.1" FT /translation="MANPRIAHAFPDDRAPCAPPAGGRIMVHLVVNVENWRFDQPMPRT FT LITPPHGRETVPDVPNFSWVDYGMRAGLARMLQAIGERGLPASTSCNASVIDAYPRAAE FT AMLRAGWEFIGHGMHQQSLNHGGGEAELIAQCLDKLRAFTGARPRGWLSPGLRETVDTP FT DILAAAGVEYVCDWVVDDLPNWMRVERGALIQMPYNLELNDSVIYAVEKHSSPEFLLRL FT ERTLALFERECRRWPRVLALGLHPHLMGVPHRYGYFEQMLDLLAGHPDVVFMNGGQIAD FT WFKSQYPAP" FT CDS 1232195..1232974 FT /transl_table=11 FT /locus_tag="BB1149" FT /product="probable short chain dehydrogenase" FT /protein_id="CAE31647.1" FT /translation="MDLQLAGKRVLITGASKGIGLACALSFAREGATPVLVARDAQALA FT RAADAVREQTGQAAETHAQDLALPGAAQALAARAGEIDILVNNAGAVPGGALDQVEDER FT WRAGWELKVHGYINLARVYYPRMRAAGAGVIANVIGMAASSPRYDYVCGAAANAALVAF FT TRALGGEGPRHGVRVFGVNPSRTRTDRVLGLAQQRAQARWNDPDRWQETLGGLPFDRLM FT EPAEVADVVVFGCSPRAGYLSATVIDLDGGEQYRGAA" FT misc_feature 1232210..1232953 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 2.6e-40" FT CDS complement(1233008..1233805) FT /transl_table=11 FT /locus_tag="BB1150" FT /product="putative transcriptional regulator" FT /protein_id="CAE31648.1" FT /translation="MATEKLPPLERYIRMLELLTAFPDGLALSELSAMIELPKASAHRL FT IKTLQELELAATSSPGSATYVTGPRLRKLAFMSADAQWVVAILRPFLRELTQEMGETAF FT VARLEGASVRTIAFEAPETPWRGFILPGYEMHPNAAASAKAILAFQDAATLKRALREPF FT ERLTPQTNLSKERLLEEYAAIRQSGVATCIGEIDEGLAAVAVPIEVGGAAGLYSLGLTG FT PMNRVMALGVERAAERMMAYAARMASGLSAGLSAESARAAGLS" FT misc_feature complement(1233056..1233613) FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 7.3e-09" FT CDS 1234057..1235271 FT /transl_table=11 FT /locus_tag="BB1151" FT /product="putative branched-chain amino acid-binding FT protein" FT /protein_id="CAE31649.1" FT /translation="MLPTSLMRRLALVALPLALSAGMAPAAAEPGVTADSLKIGILGSL FT TGPFAIFGSGNLAGATLAFEQANAAGGIHGRKLEWLSLDDESSPPKGIAAYKRLVGPEQ FT VFAVFGPSASAVGQAMVQTFKTSTTPTFISVFSTPIVTDPPLPNVFRTGPMNDREQGVA FT IANYALDHLKAKRVALIRQSDEYGKSGGESVLQRLKARGAEPVALEVFNVYDTDFNAQL FT TKIAAARPDVLVVYGYPNPSAIITRQARQLGVEGVVLGSNSAGSRKYPEIVGKAAAGTQ FT NIMTLEILPESSSTPQAQAFREAFVARFPDLARQGRPDLGDALGYGGALAFLEGIKRAG FT AQPTQQGLVKALESLQGFETGITLPTTFGPGVREGNRATRIVEVGDDLSRSILPIVVSV FT DGVKQ" FT misc_feature 1234057..1234140 FT /note="Signal peptide predicted for BB1151 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.857 between residues 28 and 29" FT misc_feature 1234159..1235247 FT /note="HMMPfam hit to PF01094, DE Receptor family ligand FT binding region, score 0.039" FT CDS 1235268..1235747 FT /transl_table=11 FT /locus_tag="BB1152" FT /product="conserved hypothetical protein" FT /protein_id="CAE31650.1" FT /translation="MNTAGQGGQAAQLYGVDLRPGLASHGSPATITRTENLGFAALTGD FT SHPIHYDEAFAARTRHGRCVVHGLLLASLGAFGATPLSRRIEDAMVAFVDSQFSFLKPV FT FIGDTVTSHFEVAQVEHKPARNLSLLRFDMWLTNDAGDTVMQGKHTYLVRMQPDT" FT misc_feature 1235316..1235687 FT /note="HMMPfam hit to PF01575, DE MaoC like domain, score FT 3.3e-11" FT CDS 1235764..1237395 FT /transl_table=11 FT /locus_tag="BB1153" FT /product="acetyl-CoA synthetase" FT /protein_id="CAE31651.1" FT /translation="MTPEYTAALERFDWRAVRGALGWGEAHAVDLAHAIIDRHRASGRT FT ALVFIDQQGRESRHSYAELAEQSDRAANLLARLGVRPGDRVAGLLPRGPEILVAMLAAI FT KIGAIYVPIFTGFKRDAIEYRLGHSGARVVFTHAALRGQLPAVLPGQARCVTVAAGAAD FT TAAGDIDFAAALREAEPRFAAQPREREDIAALIYTSGSTGRPKGGAIAVNFLAAVWPYL FT TYGADMRADDVVWPTGDPGWGYGFVCYLGALAMGATIVSLAANPTPEVCLDVLARQRVS FT NFATTPTLLRGVMALGMDAVRARPNAVRAISSCGEPLNGEVVEFFQQAWGRTPMDHFGA FT TEYGLPVGNFNAVAVPAKAGSMGLPFPGYEIAVLDDAGQPLAGAHASGWLAKRRSADRL FT YWSHYWDDAGATAELERGEWIVTGDLAHRDAEGYYWFDGRAGDMIKSAGYRIGPFEVES FT ALLAHGAVAEAAVVGVPDALRGELVKAYIVLLPGHAASPRLAEEIQLFVKTHCGAHLYP FT RIVEFVPDLPKTDTGKIQRFALRQRA" FT misc_feature 1235941..1237176 FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 4e-92" FT misc_feature join(1236046..1236114,1236382..1236441,1236484..1236552) FT /note="3 probable transmembrane helices predicted for FT BB1153 by TMHMM2.0 at aa 95-117, 207-226 and 241-263" FT misc_feature 1236346..1236381 FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 1237426..1237818 FT /transl_table=11 FT /locus_tag="BB1154" FT /product="conserved hypothetical protein" FT /protein_id="CAE31652.1" FT /translation="MSRIEAIVPYPWHPGYTYSPAVRIGNTVYLSGTTATDEQGNLVGP FT GDIEAQTRQIYRKFDLIMRSVGGSLRDIVETTDYVLSLDEYRKTARVRREVFGDPWPAA FT TGVVVAGLIRPDALIEIKAIGVLPSC" FT misc_feature 1237438..1237806 FT /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP, FT score 5.1e-21" FT CDS 1237812..1238678 FT /transl_table=11 FT /locus_tag="BB1155" FT /product="probable permease component of branched-chain FT amino acid transporter" FT /protein_id="CAE31653.1" FT /translation="MLMQILIGSLTAGAVYALVALGFVLIYKGTGVVHFGYGEQLTFGA FT YMALIGQSLLGLPFGLALLFALAASALLGWLIFGLFAGPLRHATLWTRIIATLAIGIAL FT REGLRAYMGPTAWPFPFLLSQQAFEVGGIYLVPANLAIAGIAVLILAALFLFLERTLRG FT KAILSACENRTGASLVGIRVSRVYLTIWILASLLAAVAGILIAPQLTLSPDMGIIAIKG FT FTAAVIGGFASLPGAVLGGLLLGVLEGLAGAYVSSAMKDVISYAVLILVMLLMPHGLFG FT KLIVKKV" FT misc_feature 1237812..1237862 FT /note="Signal peptide predicted for BB1155 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.916) with cleavage site FT probability 0.513 between residues 17 and 18" FT misc_feature 1237815..1238663 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 1.1e-20" FT misc_feature join(1237824..1237892,1237992..1238060,1238079..1238147, FT 1238214..1238282,1238358..1238426,1238454..1238513, FT 1238517..1238585,1238598..1238666) FT /note="8 probable transmembrane helices predicted for FT BB1155 by TMHMM2.0 at aa 5-27, 61-83, 90-112, 135-157, FT 183-205, 215-234, 236-258 and 263-285" FT CDS 1238682..1239644 FT /transl_table=11 FT /locus_tag="BB1156" FT /product="probable permease component of branched-chain FT amino acid transporter" FT /protein_id="CAE31654.1" FT /translation="MLAKKLLAYAAAALLFGLAYRYLPEYQLYQVSLIAATAIIVLGLV FT VVCGIAGQISLGQAAFVALGGYGAAILATRLGVPLYAGIPLAAAACALLGYLLGLATLR FT VSGHYLALATMAVTAIVQLAVINLDDLTGGAAGMPMPPLEIAGHVLDNGASLYLVIVPV FT FALSYALVRNLMRSRIGRAFGAVRQGEIAAAAMGVNVLHYKASAFAASGFLGALGGGLL FT GALSSYLDPSQYGITQTVYYLAIAVVGGMASPLGALIGSAIFVFIPEVLQGLQSYLGLV FT FALLLLAFIMLRPAGLASFIVRPRPAPAALSTAPGEATK" FT misc_feature 1238682..1238744 FT /note="Signal peptide predicted for BB1156 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.935) with cleavage site FT probability 0.742 between residues 21 and 22" FT misc_feature join(1238700..1238753,1238763..1238831,1238844..1238903, FT 1238913..1238981,1239000..1239059,1239126..1239194, FT 1239300..1239368,1239411..1239479,1239498..1239557) FT /note="9 probable transmembrane helices predicted for FT BB1156 by TMHMM2.0 at aa 7-24, 28-50, 55-74, 78-100, FT 107-126, 149-171, 207-229, 244-266 and 273-292" FT misc_feature 1238748..1239593 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 4.5e-15" FT CDS 1239641..1240429 FT /transl_table=11 FT /gene="livG" FT /gene_synonym="livF" FT /locus_tag="BB1157" FT /product="high-affinity branched-chain amino acid transport FT ATP-binding protein" FT /protein_id="CAE31655.1" FT /translation="MTHPILEVARVTMRFGGIVALNDVSLQVRQGDIHAVIGPNGAGKS FT TLLNVITGIYRPTSGAVRLQGGQLDRLPPHRICRLGVCRTFQNTELFGEMSALENVQVG FT LHLAPPYGMAGALLHGPRYARGERALRAQAMELLELVGLAQDGDTPAAALPFGKQRRLE FT VARALATGPSLLLLDEPAAGLRAAEIEGLNDILLRVRRERGLSILVIDHVMALVMKISD FT RITVLNFGQKIAEGRPEEVRRSPAVIKAYLGERGRDAVLA" FT misc_feature 1239731..1240330 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 3.6e-44" FT misc_feature 1239752..1239775 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1240422..1241111 FT /transl_table=11 FT /gene="livF" FT /gene_synonym="livG" FT /locus_tag="BB1158" FT /product="high-affinity branched-chain amino acid transport FT ATP-binding protein" FT /protein_id="CAE31656.1" FT /translation="MHNVDAGYGGKTVLKSVSLTVPQGAIVTLLGANGAGKSTTLKAIV FT GLVQPTAGAIELDGAPMPNRRADQALAAGVALVAEQRELFPSMSVADNLLLGGYLQRDR FT AQARRDYESLLDQFPRLRERAAQPARTLSGGEQQMLAIARALMARPRLLLLDEPSLGLA FT PQLVDDMFRIIRQINANGTTILLVEQNVALALDAASYGYVMETGAITLAGPAAELAHSE FT AIRASYL" FT misc_feature 1240491..1241042 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.5e-49" FT misc_feature 1240512..1240535 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1240815..1240859 FT /note="PS00211 ABC transporters family signature." FT CDS 1241130..1242212 FT /transl_table=11 FT /locus_tag="BB1159" FT /product="putative NADH:flavin oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2883" FT /protein_id="CAE31657.1" FT /translation="MSALFSALQIGALELPNRIVVSPMCQYSAREGQANEWHMQHLMQL FT ALSGAGLVMVEATAVEPRGRISHGCLGLYSDATEAALARVLAAARAVAAPQARLGIQLA FT HAGRKGAADAPWLGGRPLAPQAGAWRCVAPSATPFAEGWPTPQALDEEGIAGVIEAFGA FT AARRAARLGFDVVELHAGHGYLLHQFQSPLANARTDAWGGTAAGRQRLALAVARRMREA FT LPAGCVLGARITGTDWLPGGLDIEDAVSLAGQLRQAGVDYVCVTSGFVVRGARIPFGPG FT YQAGLAEQVRRRTGMPVRAVGGIADPRQAQAIIETGQADQVALARAFLADPRWVWRAAE FT TLGAPAYYAPQYRLGAGLRA" FT misc_feature 1241136..1242164 FT /note="HMMPfam hit to PF00724, DE NADH:flavin FT oxidoreductase / NADH oxidase family, score 1.3e-52" FT CDS complement(1242223..1243104) FT /transl_table=11 FT /locus_tag="BB1160" FT /product="putative lysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2882" FT /protein_id="CAE31658.1" FT /translation="MGNAMLDPVLLRSFVTVVDTGNFTRASEHLHLTQSTVSQHVIRLE FT ENLGCRLLDRGQRHVLPTEEGERLLGYARSILRLADEARESVAAAQGNAVLRLGAPEDF FT MGAALMPVLAPLLARYPLLRLEFDSGLSHQLLRRYRDGELDLLLVKQWEVDADCQAHWP FT EPLCWVAARDGPTLPAGEAVPLAVFPAGALYRQEMTRTLEASGRPWHIRYASTSLAGLV FT AAVGAGLGVSLLPAASAGGELRVLRKRDGFPAVDGLQLGLYARARLGAAGRDLRDALAA FT HCGRRAAAMNQA" FT misc_feature complement(1242253..1242840) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 3.5e-31" FT misc_feature complement(1242904..1243077) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.2e-22" FT misc_feature complement(1242949..1243041) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1242979..1243044) FT /note="Predicted helix-turn-helix motif with score FT 1694.000, SD 4.96 at aa 21-42, sequence FT GNFTRASEHLHLTQSTVSQHVI" FT CDS 1243163..1243858 FT /transl_table=11 FT /locus_tag="BB1161" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2881" FT /protein_id="CAE31659.1" FT /translation="MFKQGGLGMPIIRFYRCWLAACLVSLGGASVAAGDAGQALLQAAA FT DGDAARVKTLLAGGAPLEARDAQGNTPLLRATQGNHAEAAGALIEAGADVNAQNGIQDS FT AYLLAGARGYRAILALTLAHGADLKSTNRYGGTALIPACERGHVEVVDMLLRAGVDPDH FT VNRLGWTGLLEAIILGDGGTRHQAIVARLIEGGADVNLADGDGVSPLRHARQRGQAAIV FT QLLEAAHAR" FT misc_feature 1243163..1243261 FT /note="Signal peptide predicted for BB1161 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.458 between residues 33 and 34" FT misc_feature 1243364..1243462 FT /note="HMMPfam hit to PF00023, DE Ankyrin repeat, score FT 7.4e-07" FT misc_feature 1243562..1243660 FT /note="HMMPfam hit to PF00023, DE Ankyrin repeat, score FT 1e-05" FT misc_feature 1243661..1243774 FT /note="HMMPfam hit to PF00023, DE Ankyrin repeat, score FT 0.022" FT CDS 1243848..1244357 FT /transl_table=11 FT /locus_tag="BB1162" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2880" FT /protein_id="CAE31660.1" FT /translation="MRANSNSNPGAATPDDDALLREAIALARANARAGGRPFGALVAKD FT GVVLARGVNRMLADHDPTAHAELLALREAGRALRSARLDGCVVYASGQPCPMCLAAMRM FT SGVARAVYAYSNEQAEPYGLSTAALAAELALPPQRQPGFAFEHRPGAAAPDADLYREWQ FT DGPQAP" FT misc_feature 1243884..1244189 FT /note="HMMPfam hit to PF00383, DE Cytidine and FT deoxycytidylate deaminase zinc-binding region, score FT 3.7e-26" FT misc_feature 1244040..1244153 FT /note="PS00903 Cytidine and deoxycytidylate deaminases FT zinc-binding region signature." FT CDS 1244354..1245586 FT /transl_table=11 FT /locus_tag="BB1163" FT /product="putative membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2879" FT /protein_id="CAE31661.1" FT /translation="MTAPRLGAAPRAWAMLALVALIGLNLRPFLTGPGTVLAGIEADTG FT LGHLGASMLTVLPMLLMGVGAFLAPAVQARVGTRRGVLAALLALALGSALRLAAWDGAL FT LVATAALCGLGVAYIQAVFPGVIKDRFPGRMAAVMGVYSAMMMGGGALGARLTSRLAGG FT AGDSWRAALAWLAVPALIAFAAAWRYLAETPAARRDGALAGTLLRRPRTWLLIAAFGLV FT NGGYSSMVAWLAPAVQAQGWSIAQSGDLMVAMTIAQAAAALTLPALAARRADRRPWLYA FT TLAMQAAGFAGMAFWPAAAPLAWALIGGAGLGGCFALTFIAALDHFSQAEPAGVLAALM FT QGGGFLIAGLAPFAVAALRAATGGFAAGWTMHLACVAIACLLIQRLDPASYAQVMAAQP FT GAAATRRAPSA" FT misc_feature join(1244387..1244446,1244489..1244557,1244594..1244653, FT 1244663..1244731,1244750..1244818,1244861..1244929, FT 1244990..1245058,1245101..1245163,1245182..1245241, FT 1245251..1245319,1245356..1245424,1245434..1245502) FT /note="12 probable transmembrane helices predicted for FT BB1163 by TMHMM2.0 at aa 12-31, 46-68, 81-100, 104-126, FT 133-155, 170-192, 213-235, 250-270, 277-296, 300-322, FT 335-357 and 361-383" FT misc_feature 1244399..1245559 FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.0039" FT CDS complement(1245534..1246436) FT /transl_table=11 FT /locus_tag="BB1164" FT /product="putative LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2878" FT /protein_id="CAE31662.1" FT /translation="MDGLPPLNAVRTFEVAGRLCSITEAAAELCVTPSAVSRQIRLLEE FT HLGRKLFIRQHRGVVLTTIGHQYLGDISKALVEVRRATSEAAKPRQRAVFTVRAPHSIA FT MRWLLPRLARFHAAHPHIDVKLDTSLTPPDFEREDLDAGVMLGRGQWKGLLSHMLIRNE FT LIPVCAPHKARALRTPADLADETLLHVFGRPDDWVAWLGAAGVEHVDVHRGMKYESSAL FT AYEAALEGYGIAIAQKALIDKDLQEGRLVTPFDLSVDQGDYTYYFVLPPEGYKRRSPAL FT DTFRRWVRDVSLPRQAAPP" FT misc_feature complement(1245558..1246175) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 6.6e-31" FT misc_feature complement(1246239..1246418) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1e-20" FT misc_feature complement(1246284..1246376) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1246314..1246379) FT /note="Predicted helix-turn-helix motif with score FT 2287.000, SD 6.98 at aa 20-41, sequence FT CSITEAAAELCVTPSAVSRQIR" FT CDS 1246589..1247560 FT /transl_table=11 FT /locus_tag="BB1165" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2877" FT /protein_id="CAE31663.1" FT /translation="MRPACARWLLACMAPLAGAAAVAETYPARPVTIVVPTTAGGTADI FT LARLIGPKLTALWGQPVVVENRSGAGTLIGTEFVARAAPDGYTLLLSFSELATLPALNK FT NARIDVVKDLARVGKIGSLPVLFLAHPSMPPNTMDELVTRLRADPGKYSYASNGMGSAL FT QLYTEMFKRIAKVDIMHVPYRGGLEASRAVLGGEVDLLLQLGNGNVIGYVTSGKAKAYA FT VASPQRLAALPDVPTTAEAGLPGLQLEAWYGLFAPAGLPPERLEKLNRDLSAVLAMPDV FT HSRLTSFGIQVQPGTPQQFDAFFHDEYQRWTRLIEDAGIQIN" FT misc_feature 1246589..1246657 FT /note="Signal peptide predicted for BB1165 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.835 between residues 23 and 24" FT misc_feature 1246724..1247548 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 6.7e-92" FT CDS 1247599..1248972 FT /transl_table=11 FT /locus_tag="BB1166" FT /product="amidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2875" FT /protein_id="CAE31664.1" FT /translation="MNYHPSTHTPLTFHDRTSAFLDGGDSPRDYLERCLDTIARREPLV FT QGWVVLNETGARAAADASARRYREGRPLSAIDGMPVGIKDLIETRDMPTQMGSPAYTGN FT FPKRDSAVVRALREAGAIVLGKTVTTALGFLDPGPTTNAFDPERTPGGSSSGSGAVVGA FT NMVPVAVGSQLVGSMLRPASFNANWVLKPTYGGMNRGERQGFSQSHVGIHAGCAQDMWT FT TSIEIVRRVGGDPGHPGLYGEAAPPAGRKPARLAVLETEGWERLDAASRAAFEAALERI FT AGQGVRIVRRADCSLVDGLERAIAQAGALSMRLISWEHHWSLKNMAEQHPGTLGPSLVR FT QLELGQAMTLERYRHDMLEREAARQRLAALATRCDALVSLASSGPAPRIADLRGTPYPT FT GDYSFSCVSSLLGAPAISVPALGVDGMPVGLQVIGQLHGDEQVTAIGRWLHALLAAPR" FT misc_feature 1247683..1248927 FT /note="HMMPfam hit to PF01425, DE Amidase, score 6.9e-45" FT misc_feature 1247956..1247979 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1249014..1249715) FT /transl_table=11 FT /gene="ribE" FT /gene_synonym="ribC" FT /locus_tag="BB1167" FT /product="riboflavin synthase alpha chain" FT /EC_number="2.5.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP2874" FT /protein_id="CAE31665.1" FT /translation="MFTGIVQGTATIAGIADRQGLRTFTIDFPAGFCVDLAIGASVSVD FT GVCLTVTHIVSADTATFDVMLQSLDVTTLGGYAVGARVNVERAARDGAEIGGHPLSGHI FT DFAAAVERVRNLDNNRVLRIGIPPAFRKYVFAKGYIAVNGASLTVSEVDREEGWFEVWL FT IPETRRMTVFEEKQAGDALNIEIERSTQVVVDTVREAVQESLGKLQPVLEAILKEKGLS FT LEDFVRPPALK" FT misc_feature complement(1249155..1249415) FT /note="HMMPfam hit to PF00677, DE Lumazine binding domain, FT score 3.4e-12" FT misc_feature complement(1249452..1249709) FT /note="HMMPfam hit to PF00677, DE Lumazine binding domain, FT score 1.6e-18" FT misc_feature complement(1249458..1249496) FT /note="PS00693 Riboflavin synthase alpha chain family FT signature." FT CDS 1249982..1251019 FT /transl_table=11 FT /locus_tag="BB1168" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2873" FT /protein_id="CAE31666.1" FT /translation="MLARRSHTTPLIREFPMKSIQSRLLATWAVCAAAGMLAGPAVASG FT AAYPTKPVTMIVSFPPGGSSDFFTRLVANNLSKMWGQPVVVENRPGAGGNIGAQAGAHA FT PADGYTLYMSSINTHAINPGLYQNPGYDHIKDFAPISEIATVMNVLVVNPSVPAKSVSE FT LLAYFKADPSKAFYASPGAGTSPHLSSELFKRMTDTPITHVPYKGSNAALTDVMAGMVP FT MAIDNLPAALAHIKAGKLRALAVTSPKRSPDLPDVPTMDEAGVKGYDVTTWWALFAPAG FT TPQPIIAKINKDVNALLALPDVKQSIAKQGAEPAPSTPEELARLVEQETARWGKVIKDA FT KVTID" FT misc_feature 1249982..1250110 FT /note="Signal peptide predicted for BB1168 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.932 between residues 43 and 44" FT misc_feature 1250183..1251007 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 9.8e-115" FT CDS 1251120..1251581 FT /transl_table=11 FT /locus_tag="BB1169" FT /product="putative AsnC-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2872" FT /protein_id="CAE31667.1" FT /translation="MDATDRKIIAILQENAETPIQSIADQVSLSTTPCWRRVQKLKESG FT VIRRQVALCDPVALNVGVTVFISVKTNQHSQAWLDRFADHVTDIPEVVEFYRMSGDIDY FT LIRVVVPDISTYDTVYKKLIRIADLHDVSSSFAMEQLKYTTALPVDYAS" FT misc_feature 1251171..1251236 FT /note="Predicted helix-turn-helix motif with score FT 1002.000, SD 2.60 at aa 18-39, sequence FT TPIQSIADQVSLSTTPCWRRVQ" FT misc_feature 1251192..1251500 FT /note="HMMPfam hit to PF01037, DE AsnC family, score FT 5.2e-37" FT CDS complement(1251597..1252145) FT /transl_table=11 FT /locus_tag="BB1170" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2871" FT /protein_id="CAE31668.1" FT /translation="MRFNATSVAGAAQPQRLHGLAADIDRAVASASAAQTPAAVAGVLA FT AYREPDELLTPAQQAGNAEHYARHLLYAHPLGRFSIVALAWQPGQCTPVHGHFTWCAYA FT VLRGAMQEEQYDWDAAAQCALATRVVARAPGDCVASLAGLDAIHRLRNVGAGTAISLHV FT YGVEGDRVATHVNRIARAA" FT CDS complement(1252287..1253777) FT /transl_table=11 FT /locus_tag="BB1171" FT /product="putative acid CoA ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2870" FT /protein_id="CAE31669.1" FT /translation="MSLNLGQLTDPNKNPAAIALIDCLDHEAPRIYTHGDLDRLANACA FT RGLLRKGLKTGDAVALMGINRAEFLIAYLGIMRAGMVAVPVNYKLAPDTLSFLLQDCQA FT RLAFVDEPRAALAPAGLDTVRLDTAQWDEFLDPGPFETYAPPPRTTAMILYTSGSTGRP FT KGVQLSHDGQLWTIRSRFLNRKDFDNERFIVAAPMFHMNALANCKFALAAHASIVLLPQ FT FDTHRFIEALGRHEVTWITSVPTMMALVVKEKQALAQIDTARVRYIRMGSAPATDQLYE FT AVRRAFPNAAIAGGYGTTEAGPIVFGPTQGRALPGGGGLGWVLPDVEVRLVDAQGRDAD FT EGELWMRTPANMLGYLNLPDKTRQVLTEDGWYISGDVFRRDSDGCYYFIGRADDMFNCG FT GENIYPGEIEQVIERLPAVMQACVVPVADEIKGHKPVAFVVLQRGMSLSEQDVKSYVLA FT NAPAYQHPRRVFFVESLPLAATSKVDRRALALRAQAEA" FT misc_feature complement(1252509..1253681) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 6.1e-111" FT misc_feature complement(1253286..1253321) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 1253883..1254974 FT /transl_table=11 FT /locus_tag="BB1172" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2869" FT /protein_id="CAE31670.1" FT /translation="MHASDPFSETYAQARAKFLEAARAAGADIHSYCHDTQRGPDGEAL FT YLDVARLGGAQASRMLVVGCGTHGIEGYSGSAAQTDWLRRLDPSRLPRDTGVLLLHAHN FT PWGFAHALRFTEENVDLNRNFVDFSQPLPQNPRYAEVHALIARDHWDEQDVEAIFRKLS FT DFRESVGEQVYSDAFNGGQYSHPTGIFYGGTRQQWSNRALREAIATHLAGVRQAAFIDL FT HTGIGPERGHVFLCFHEAGSPAYERARRWWGERAVNRDGVTHKAVARYQGLLVDAFVAM FT LPEAETTAVVVEFGTLPRPRMQRASMAARWLWEHQDADGALRATLMRDIREAFYPSAPD FT WRAGVLVQSREIFDRALAGLGQD" FT CDS complement(1254978..1255760) FT /transl_table=11 FT /locus_tag="BB1173" FT /product="putative ABC transport proteins, inner membrane FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2868" FT /protein_id="CAE31671.1" FT /translation="MKERTKSIVYPLLLLAALLVLWFIANRYLGVPYYVLPPVEGVLAA FT LYRGYVQGDFWGDFGFTLASMAIGYVGGCTAAFIIGVLFAEYRWLERLLYPFVLALQSM FT PKVALAPLILVWFGFGLESKAIMVALVCFFPMFINTAVGLKATDPALLDLMRAFSASRW FT HILTRIKIPSAASHIFAALQISVVLGLIGAVVAEFVSSSKGLGYLINAATTTLDTSTMF FT AALISLAVLGIAGSQLIRALHRKLVFWDRGEAGRTLTE" FT misc_feature complement(join(1255035..1255103,1255161..1255229, FT 1255320..1255388,1255401..1255469,1255506..1255574, FT 1255674..1255742)) FT /note="6 probable transmembrane helices predicted for FT BB1173 by TMHMM2.0 at aa 7-29, 63-85, 98-120, 125-147, FT 178-200 and 220-242" FT misc_feature complement(1255680..1255760) FT /note="Signal peptide predicted for BB1173 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.965) with cleavage site FT probability 0.528 between residues 27 and 28" FT CDS complement(1255770..1256558) FT /transl_table=11 FT /locus_tag="BB1174" FT /product="putative ABC transport proteins, ATP-binding FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2867" FT /protein_id="CAE31672.1" FT /translation="MNQAQHNGSAPVFRVQGLEVTYRSSRGPTTALEGFSTTVAEGEFL FT SILGPSGCGKSTLLKVAAGLLKPSAGVAELRGQAIDGPRRDVGIVFQHATLLPWQNVLD FT NVLLPIRTMGMDIAAGTARAHALLKTMGLEKFEQHYPHELSGGMQQRVGIARGLIHDPS FT LLLMDEPFAALDAMTRETMMVELQRIWSETRKSVMFITHSIPEAVFLSSKVVVLGPRPA FT RVLREIDIDLPFPRTEETLASPKFAQLCAELRSLFSNVAH" FT misc_feature complement(1255905..1256435) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.6e-48" FT misc_feature complement(1256085..1256129) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1256391..1256414) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1256570..1257646) FT /transl_table=11 FT /locus_tag="BB1175" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2866" FT /protein_id="CAE31673.1" FT /translation="MLLVPSNLARAACAIVMSTVLYSPAHAELTKLRYGNVTDMTLSQA FT PMVAAKQLGYFKEEGLDVELMGFKGTGTLIPQMLAKRVDIGYPNPDTLIISRAPGKDKL FT PLKFFYNATRASGWEFAVLADSPLKSLKDLDGRKVGVGAMTFGNVPITKAEFKELGIDA FT SMVPVGIGSAAFLALQNKQIDALNLFDSQHATLETQGTAIRRLPQLPRYEALFSNGMVA FT HEDMIRDKPEVLAGFGRAMAKATVFCETNREACVRLFWKEYPNTKPAGDDAKVLADSVK FT VFSARFNKMLVFPEGKPRQWGQYNPDTWRDFAAALHEGGQLETLDVDLDSVYTNAFVDK FT FSDFDTAAVQAQAKAFKD" FT misc_feature complement(1257566..1257646) FT /note="Signal peptide predicted for BB1175 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.990 between residues 27 and 28" FT CDS complement(1257683..1258117) FT /transl_table=11 FT /locus_tag="BB1176" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2865" FT /protein_id="CAE31674.1" FT /translation="MSQQAARKLEKADIEAIFARSRFISAMNLEILDIDHAGSRFSVRM FT PLQDTYERGAPGTKQFHGGALAALIDVVGDFAIGMLVGGGVPTMNLRIDYLRPAVGDYV FT DGVAVVRKAGKSAAVVDIDILCPAGKLVAIGRGTYVPITG" FT misc_feature complement(1257692..1258054) FT /note="HMMPfam hit to PF02584, DE Uncharacterized protein FT PaaI, COG2050, score 2.6e-05" FT CDS complement(1258114..1259124) FT /transl_table=11 FT /locus_tag="BB1177" FT /product="putative alcohol dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2864" FT /protein_id="CAE31675.1" FT /translation="MRAAVIYEHGGPGSIKYETAFPDPVAKPDEVILKVGAATLNYHDV FT FTRNGMPGITVPMPIIMGLDFAGEVVEVGADVKDWKVGDRVLVDPSDRKTFGGVIGEAR FT HGGLAEYCAVPDHHLVRLPDDVSFETAACLPVAYGTAWRMMQTIGKIQSGERVLILGAS FT GGVGTCCVQLAKMAGAEVVAAASSPEKLARLTELGADHVIDYKQEDFMKAIFAKFGKPH FT RRLYENGVDVVVNFTGGDTWVKSLRTLHRNGRVLTCGATAGYDPKEDLRFIWSYELQIL FT GSNGWTRDELIALLEQVRAGKLQPIIDRTYGLADINDAFRQLEDRQVFGKILVKP" FT misc_feature complement(1258120..1259100) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00107, DE Zinc-binding FT dehydrogenase, score 2.5e-86" FT misc_feature complement(1258600..1258665) FT /note="PS01162 Quinone oxidoreductase / zeta-crystallin FT signature." FT CDS complement(1259168..1260094) FT /transl_table=11 FT /locus_tag="BB1178" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2863" FT /protein_id="CAE31676.1" FT /translation="MTSHSTDHDTIGMPNLNLSLDHTGLIVFKLEDARQAFERLGFTLT FT PRSMHAGALTPGGPVVPWGSGNHCAMFRNGYFELLGLVEPDKPSTARRMLDRYEGLHIV FT AMDCESADAMHPQLTAAGVPAPAPATLERDAAFGPANDQTRRARFRNINLDGEAYPEAR FT FIVIEHGTRDVLWQPHLLDHPNGATGLAAMYFAAADLSATLERFQRLLGTPSAHGDAYC FT FELRRGRFWVMSEAAMREHCPVLADGPVHRVAAACIEVRSLPALQEYLQARQIDYVAAP FT YLDGAAPSIWVAPAQASCAALQFIQAR" FT CDS 1260381..1260749 FT /transl_table=11 FT /locus_tag="BB1179" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2862" FT /protein_id="CAE31677.1" FT /translation="MPQHDKSRLVRIDTGPMINPVAGKPSRPIAGDASFRTVTAFEGGQ FT GKVESGVWESTSGSFQSNTTGYIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYTG FT RWEVDRHVKKIYFVTHLA" FT CDS 1260912..1263338 FT /transl_table=11 FT /locus_tag="BB1180" FT /product="probable cation-transporting ATPase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2860" FT /protein_id="CAE31678.1" FT /translation="MTCASCVGRVERALKAVPGVSDAVVNLATERADVRFAGAPDVGAA FT VQAVEQAGYAVAASTMELAVSGMTCASCVGRVERALKAVPGVRAASVNLATERAHVEIA FT GAVAPQALVQAVAAAGYEARPLDPGGAAADAAARRQAAELQGLRRALIVAAVFALPVFV FT LEMGSHMIPAFHHAVAGSIGVQNSWYIQFVLASIVLFGPGLRFFRKGVPALLRGAPDMN FT SLVAVGTAAAYAYSVIATFAAGVLPPGTVNVYYEAAAVIVALILLGRYLEARAKGNTSE FT AIKRLMGLQAKTARVRRDGATVEVPIAQVAAGDVVEVRPGERVPVDGQVIEGTSFVDES FT MISGEPVPVEKQPGAEIVGGTVNQNGALALRATKVGGDTVLAQIIRMVEQAQGSKLPIQ FT ALVDRITMWFVPAVMAVALATFAIWFVFGPDPALTFALVNAVAVLIIACPCAMGLATPT FT SIMVGTGRAAQLGVLFRKGEALQALKDARVVAVDKTGTLTKGRPELTDLVLAEGFERAA FT VLGKVAAVEAKSEHPIARAIVDAAQVEGARPGAIEAFESITGYGVAARVDGARVEIGAD FT RYMARLGLDVAVFAAEAARLGDEGKTPLYAAIDGRLAAMIAVADPIKNTTAAAIRALHG FT LGLKVAMITGDNRRTGEAIARQLGIDEVIAEVLPDGKVDAVKRLKAEHGALAYVGDGIN FT DAPALAEADVGIAIGTGTDIAIEAADVVLMSGDLGGVPNAIALSQATMANIRQNLFWAF FT AYNVALIPVAAGVLYPVNGSLLSPVFAAGAMALSSVFVLSNALRLRRFAAPFAAR" FT misc_feature 1260912..1261085 FT /note="HMMPfam hit to PF00403, DE Heavy-metal-associated FT domain, score 1e-14" FT misc_feature 1261092..1261286 FT /note="HMMPfam hit to PF00403, DE Heavy-metal-associated FT domain, score 2.3e-26" FT misc_feature 1261104..1261193 FT /note="PS01047 Heavy-metal-associated domain." FT misc_feature join(1261362..1261430,1261473..1261532,1261581..1261649, FT 1261662..1261715,1262124..1262192,1262205..1262273, FT 1263153..1263221,1263231..1263299) FT /note="8 probable transmembrane helices predicted for FT BB1180 by TMHMM2.0 at aa 151-173, 188-207, 224-246, FT 251-268, 405-427, 432-454, 748-770 and 774-796" FT misc_feature 1261689..1262357 FT /note="HMMPfam hit to PF00122, DE E1-E2 ATPase, score FT 5.4e-104" FT misc_feature 1262367..1263047 FT /note="HMMPfam hit to PF00702, DE haloacid FT dehalogenase-like hydrolase, score 4.7e-31" FT misc_feature 1262385..1262405 FT /note="PS00154 E1-E2 ATPases phosphorylation site." FT CDS 1263387..1264079 FT /transl_table=11 FT /locus_tag="BB1181" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2859" FT /protein_id="CAE31679.1" FT /translation="MTNPGDGAAGAVDCATLDHWRPRLAAIAAAAGQDDAAHDLGHLRR FT VWDAARAMLQAHPEADALVVLAASYLHDLVNLPKNHPERHLASRQAAAAARERLARAGF FT PAARLDAVAHAIEAHSFSAGIAPRTIEARIVQDADRLDALGPVGLARMFHVGGSLGRAL FT AHPSDPLAAQRALDDSRYTLDHIEAKLARLPHGMQTEAGRRLGEQRLAWLRDFRAAFAA FT QWGGGQLR" FT misc_feature 1263501..1263818 FT /note="HMMPfam hit to PF01966, DE HD domain, score 4.4e-14" FT CDS 1264152..1265351 FT /transl_table=11 FT /gene="tyrB" FT /locus_tag="BB1182" FT /product="aromatic-amino-acid aminotransferase" FT /EC_number="2.6.1.57" FT /note="ortholog of Bordetella pertussis (BX470248) BP2858" FT /protein_id="CAE31680.1" FT /translation="MFEHVQAYPGDPILSLNEDFQKDPRAGKVNLTIGIYFDEAGRIPV FT MAAAREAEAALLADIGPRPYLPMAGLPAYRDLVQELVFGAGSAARRAGRIATVQTLGGS FT GALKVGADFLKRYFPKSEVWVSDPSWENHRTIFEGAGFAVHTYPYYDDASGGLRFDEML FT ATVGGLPAGSVVLLHACCHNPTGVDLDRAQWDALIPVLRERGLIAFVDMAYQGFGDGLD FT DDAYAVRAIAEAGVTCVVANSFSKNFSLYGERCGGLSVVCETAEQAGCVLGQLTSTIRA FT IYSNPPTHGARIVAQVLGTPALRQSWEAELGAMRERIQAMRRAIHDGLAGRVEPRMLQR FT YLSQRGMFTYTGLGAEQVETLRRDQGVYLLRSGRMCVAGLNRDNVAVAADAIASVLARG FT " FT misc_feature 1264389..1265339 FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 1.9e-85" FT misc_feature 1264893..1264928 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS 1265536..1266162 FT /transl_table=11 FT /locus_tag="BB1183" FT /product="putative isochorismatase" FT /protein_id="CAE31681.1" FT /translation="MGKRYAKLDKNNVAVLMVDHQVGLLSLVRDIDPDKFKNNVLAVAD FT LATYFKLPTILTTSFEDGPNGPLVQELKDQFPEAPYIARPGQINAWDNEDFVKAVKATG FT KKQLLIAGVVTEVCVAFPALSAIEEGYEVFVVTDASGTFNEVTRHSAWSRMEQAGAQLM FT TWFGVACELHRDWRNDIEGLGALFSSHIPDYRNLIAAYTTVKGGK" FT misc_feature 1265557..1266048 FT /note="HMMPfam hit to PF00857, DE Isochorismatase family, FT score 2.9e-46" FT CDS complement(1266211..1268187) FT /transl_table=11 FT /locus_tag="BB1184" FT /product="putative exported protein" FT /protein_id="CAE31682.1" FT /translation="MSILRRLLLSLTLAIGIILLGTLVLSINAARGYLSDQLQVQSTDA FT AVSLALSLSQPANNDPVTQELLVSALFDGGHFSLVRLADPQGAVMVERGAQPAASVPAW FT FQALAPLANRAASHAVSDGWRQIGEVTLVANDAYAWETLWASSLRMAALIMGAGVLWAL FT FAFALVRWIEKRLLFQVSEQVRAIDSRASGEQAFARVAEFSGIVDALAQTRERVRATAE FT EQSSRIESLEVELNQDPVTGLANRKYFINEFRRALDEKPADSPALPARLSSAGGHVLVF FT RQRDLTALNRHMPRQFIDQWLQSVCQRISALVTAQGLAQSLVARLNGSDFAVLLPHCAA FT PQAQVIADLVRAELRTLRIPVGEGGLCRWAMALADYAPGTQFNGVLARLDFGLTRAESA FT GDDHAVLVGPDNADPFSAAGQSAWMDALVTALDQQRFSLAFEPLHAVDGRLVRMEAMLM FT LHNDDAREPIPAMLFIPAAVRLNLSAECDLQAVRLALDWLAAQPGELAVRLSLPSLGKR FT SFLRQLELMLADRRAQVGRLYLEVDAHGLVDREGDVIALERIAAHFGAHVGLRRLAQQF FT GAMSRLHSLPLAYVKLGGGFVGGMSQSPGSRQLAGSVIDTARALNIDVYAEDVPDAATR FT DILASMGVEVMRGPGVTPPPAQE" FT misc_feature complement(1266217..1266933) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00563, DE EAL domain, score FT 2.6e-10" FT misc_feature complement(1266343..1266405) FT /note="PS00445 FGGY family of carbohydrate kinases FT signature 2." FT misc_feature complement(1266979..1267497) FT /note="HMMPfam hit to PF00990, DE GGDEF domain, score FT 1.3e-05" FT misc_feature complement(1268101..1268187) FT /note="Signal peptide predicted for BB1184 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.571 between residues 29 and 30" FT CDS complement(1268203..1268886) FT /transl_table=11 FT /locus_tag="BB1185" FT /product="putative exported protein" FT /protein_id="CAE31683.1" FT /translation="MPLSTRPRKAPRLALAALLSLACGWGGVHALDVDTGKLQSLAASR FT YGARGARAVDDWLQLLRNDTAASEANQLARVNAFWNQRVLSGEDTHIWGRADYWATPLE FT TLGKGAGDCEDYVIGKYFSLISLGVPTEKLRFIYVRARIGGPYSNQQIAHMVLGYYPTP FT NAVPLVLDSLISTIMPANERRDLTPVFSFNADGVYVDGKQASPVDRLSRWRDLLLRMER FT EGLRP" FT misc_feature complement(1268797..1268886) FT /note="Signal peptide predicted for BB1185 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 30 and 31" FT misc_feature complement(1268818..1268850) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(1268967..1279007) FT /transl_table=11 FT /locus_tag="BB1186" FT /product="putative hemolysin" FT /protein_id="CAE31684.1" FT /translation="MANSSPAVVTAVTGRAWIRNSDGSLTELHEGSKVPQGSDIVTASG FT STVALQVDGGMPLVIGEGREVAVTPDLNGGGGDASEAAVALPTTTDSERLLAALQDGRD FT PFDELDPTAAVIGGSGDSAGSSFVRLAKILESTTPMDLAYPNPGRGEDGVRTFLGGATA FT GADDEAAPAPANQAPNALDDLGQTRQGQALRGNLMLNDSDPDGDPLTVVSVNGRPMTSG FT GLTLPGSGGGTFTVQPDGSYTFVPGNEHQSLGEGQTTTTTITYTITDPSGATSTATLTV FT TVTGTNDAPTLTPGVTLGDQANDDGEAIAPVDISGQFQDIDKGDTLTFTANGLPPGLTL FT DPATGIISGTLDNSASQGGNNGVYTVTITATDSGGKSVSQTFEWDVTNPAPTAVADAGA FT TDEDTTLTVTDPAQGVLKNDTDPDNDDLHVSAVNGQPGNVGAAIAGDNGGTFTLNADGT FT YTFNPGPDFQNLAKDATAETSITYTVSDGEGGTSSATLTITVTGTNDAPTLTPNVTLDD FT QANNDGEAITPVDISGQFEDVDNGDTLTFTADGLPPGLTLDPATGIISGTLDNSASQGG FT ANNDGIYTVEITATDANGASVSQTFEWDVNNPAPTAVADTGTTDEDTTLTVTDPAQGVL FT KNDTDPDNDDLHVSAVNGQPGNVGAAIAGDNGGTFTLNADGTYTFNPGPDFQNLAKDAT FT AETSITYTVSDGEGGTSSATLTITVTGTNDAPTLTPNVTLDDQANNDGEAITPVDISGQ FT FEDVDNGDTLTFTADGLPPGLTLDPATGIISGTLDNSASQGGANNDGVYTVEITATDAN FT GASVSQTFEWDVNNPGPTAVADTGTTDEDTTLTVTDPAQGVLKNDTDPDNDDLHVSAVN FT GQPGNVGAAIAGDNGGTFTLNADGTYTFNPGPDFQNLAKDATAETSITYTVSDGEGGTS FT SATLTVTVTGTNDAPTLTPNVTLDDQANNDGEAITPVDISGQFEDVDNGDTLTFTADGL FT PPGLTLDPATGIISGTLDNSASQGGANNDGVYTVEITATDANGASVSQTFEWDVTNPGP FT TAVADTGTTDEDTTLTVTDPAQGVLRNDTDPDNDDLHVSAVNGQPGNVGAAIAGDNGGT FT FTLNADGTYTFNPGADFKDLPEGTSVETSITYTVSDGEGGTSSATLTITVAGGNDAPIL FT TPGVTLDDQANDDGEAITPVDISGQFTDPDTGDTLTFTADGLPPGLTLDPATGIISGTL FT DNSASQGGANNDGVYTVEITATDAGGKSVSQTFEWDVNNPGPTAVADTGTTDEDTTLTV FT TDPAQGVLRNDTDPDNDDLHVSAVNGQPGNVGAAIAGDNGGTFTLNADGTYTFNPGPDF FT QNLAKDATAETSITYTVSDGEGGTSSATLTITVTGTNDAPTLTPNVTLDDQANNDGEAI FT TPVDISGQFEDVDNGDTLTFTADGLPPGLTLDPATGIISGTLDNSASQGGANNDGVYTV FT EITATDANGASVSQTFEWDVNNPAPTAVADTGTTDEDTTLTVTDPAQGVLKNDTDPDND FT DLHVSAVNGQPGNVGAAIAGDNGGTFTLNADGTYTFNPGPDFQNLAKDATAETSITYTV FT SDGEGGTSSATLTVTVTGTNDAPTLTPNVTLDDQANNDGEAITPVDISGQFEDVDNGDT FT LTFTADGLPPGLTLDPATGIISGTLDNSASQGGANNDGVYTVEITATDANGASVSQTFE FT WDVNNPGPTAVADTGTTDEDTTLTVTDPAQGVLKNDTDPDNDDLHVSAVNGQPANVGAA FT IAGDNGGTFTLNADGTYTFNPGPDFQNLAKDATAETSITYTVSDGEGGTSSATLTITVT FT GTNDAPTLTPNVTLDDQANNDGEAITPVDISGQFEDVDNGDTLTFTADGLPPGLTLDPA FT TGIISGTLDNSASQGGANNDGVYTVEITATDANGASVSQTFEWDVNNPAPTAVADTGTT FT DEDTTLTVTDPAQGVLRNDTDPDNDDLHVSAVNGQPGNVGVAIAGDNGGTFTLNADGTY FT SFNPGPDFQNLAQGDSVETSISYTVSDGEGGTSTTTLTVTVTGVNDTGAISVNLGADDG FT KVYEAGLDNPADDSETTGGTITVSASDGISSVTIGGQTFTVAQLSGDLSSLPAINTTEG FT TLTITGYTPSADGKSADITFSYTLNEAQTHSQPGNDTITDNIGVTVTGNGDSETSSSFN FT ITIVDDVPTFQTVTDTVLANEAGQTQTGTLEFESGADGVGSLNITGITGLPNDWTTSAM FT NNASVNIFSPDGTHVFTVTLNTDGTYTVDQLATRPGTTESVNMGSQITNSPQASYDFGI FT ASVTVLHSNQQVQFNGKGSNVPNVSHEFGIGNTWFEGGESFQMTFESPMLNFNFGIATV FT NNPGSVKVTLFDGVNTLTLTVPVNAGDTSLSITQDQIQAAAAAAVPPISFGEFSTATLE FT GVGGLKVSLTTLSYTNSVPADDMDFTVHVTGTDGDGDPAQTEFDVTSGAEAAVVDAFNR FT VMEDSGDTVGGSVMLSTALAVVSVSVNGTDVTNATAGNPVTFHTGKGTLVVTGYDPQTG FT ALSYTYTEKGQAHNHGNGKNSVHDDFTVTVTDSDGQERSGDLVIQILDSVPTAHADLDN FT VTEGVTQNVSAADGVLANDTSADGWHHAGAIVGVAAGDTGAISHGKVGQAIDGLYGKLT FT LNADGSYSYKANASGQGALPGDGQDVFTYTVRDADGDLTSTTLTINIDQFVAGSNDNNT FT ITGGAGNDVMLGDQGGIKQNVTAGTSYNIALVLDLSDSMNDKWGSGSNKPTRLQTAKDA FT LKALLENQLAVHDGEINVSLITFNGSSSALKKSITGLTPENVDEMVDILMGLKASSTTP FT YGAAFDRTTQWFEGQPTVDSEGKPYKNLTFFLTDGEPSTEWSYNRDNEFAELAAISDVH FT GIGIGSGVSTSTLNKYDNTGGYYTGGQETHVNFSGNSNANNVNTWDKDGTGTVTKNDNA FT MRITDTTADGQAFKVTMNPDHRMNVTSAGGASFSFALSMGNKNPADKFEWVLMKWDGTQ FT WNEVERGTDASTRTGIHGPGQYGFQFIVNDNSGGGQFYATVDTIRSYTSGRTGNSQTVL FT DPSDLESALIGGSQSTELAPVGNDKLYGGDGNDILFGDAINTDNLPWGVAGNPAKPADL FT PNGSGLEALKDFLFLKNGVQPTDADLHKYISENHALFDVDGDTRGGNDELHGGAGNDIL FT YGQGGNDKLYGGDGDDILYGGAGTDELRGGAGSDELHGGEGKDLLIGGQGDDILYGGDG FT SDTFKWELNDQGVVGAPARDTIKDFSNADIADGGDVLDLGELLQGENSGNLTQFLKFSS FT DGQDTVIQVNTQGHVNTQGADQTIVLENIDLTAGGTKDDAAIIQDLLSRHKLQVDQ" FT misc_feature complement(1269303..1269356) FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.00069" FT misc_feature complement(1269357..1269410) FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.0046" FT misc_feature complement(1269363..1269419) FT /note="PS00330 Hemolysin-type calcium-binding region FT signature." FT misc_feature complement(1269411..1269464) FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.0018" FT misc_feature complement(1269444..1269500) FT /note="PS00330 Hemolysin-type calcium-binding region FT signature." FT misc_feature complement(1269465..1269518) FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.00043" FT misc_feature complement(1269741..1269794) FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.049" FT misc_feature complement(1270878..1270931) FT /note="HMMPfam hit to PF00353, DE Hemolysin-type FT calcium-binding repeat (2 copies), score 0.081" FT misc_feature complement(1275249..1275272) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1277877..1277900) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1279258..1279923) FT /transl_table=11 FT /locus_tag="BB1187" FT /product="putative LuxR-family transcriptional regulator" FT /protein_id="CAE31685.1" FT /translation="MHATPVLLVTDDDLLWQHWRGLDAARWLPARGRGLASLQQWQGQG FT RQLVVLDASVARLPAWDAPQWQELTAGLRLVVASSRPSDAQGTQVFAAGAYGYCHSHAP FT LASLMQVLEVVSGGGIWMGRSLVTRLLKLVDERVPSAPAPWQHDRLTERENAVALRAAH FT GDSNADIAGELGITERTVKAHLSAAFEKLGVSDRLQLALCVHGISTRTPAPRTGTDGR" FT misc_feature complement(1279294..1279485) FT /note="HMMPfam hit to PF00196, DE Bacterial regulatory FT proteins, luxR family, score 1.6e-13" FT misc_feature complement(1279351..1279434) FT /note="PS00622 Bacterial regulatory proteins, luxR family FT signature." FT misc_feature complement(1279366..1279431) FT /note="Predicted helix-turn-helix motif with score FT 1291.000, SD 3.58 at aa 165-186, sequence FT DSNADIAGELGITERTVKAHLS" FT CDS complement(1279945..1281387) FT /transl_table=11 FT /locus_tag="BB1188" FT /product="HlyD-family secretion protein" FT /protein_id="CAE31686.1" FT /translation="MQNTQNATLAAPPARQGSLLGALWRVPRGWIMGLFDRLLDGAERK FT DGPSPANYVGNAEWAIRQADARGSRVLLWASLLATLALLLWAGFGYIDEVVRGEGKVVP FT SRQVQIVQSLDGGIVEEILVRPGEAVETGQVLLKIDPTRFASSLGENNAEYLSLLAKAA FT RLKALATGEPFVAPEKVLQEAPAIVEMERNTWQARTSELNATVNVAREQLKQREEELRE FT TIAKRDQASASCGLTSRELQVTRPLLKSGAVSEVDLLRLQRDVARYCGEQKGAEAQIDR FT IGASIKEAQSKLQEAELNIRNQARSELSETNTKLATLREGQAALADRVKLADIRSPVRG FT TVKSLFSNTVGGVVQPGKDIIEIVPTDDTLLLEVRVLPRDIGFLHPDQKAEVKFTAYDF FT AIYGGLEGHVEQIGADTVTDEKGNSFYIVRVRTNSATLGDRKLPIIPGMVAEVHILTGK FT RTVLQYLLKPILRAKENAFTER" FT misc_feature complement(1279990..1280058) FT /note="PS00543 HlyD family secretion proteins signature." FT misc_feature complement(1280152..1281069) FT /note="HMMPfam hit to PF00529, DE HlyD family secretion FT protein, score 3.3e-15" FT misc_feature complement(1280161..1280208) FT /note="PS00225 Crystallins beta and gamma 'Greek key' motif FT signature." FT misc_feature complement(1281112..1281180) FT /note="1 probable transmembrane helix predicted for BB1188 FT by TMHMM2.0 at aa 70-92" FT CDS complement(1281390..1283564) FT /transl_table=11 FT /locus_tag="BB1189" FT /product="probable ABC transporter" FT /protein_id="CAE31687.1" FT /translation="MTTDKFSDPATRSWRADPHASHEDPLLDCLVELTRIHGVPATAQA FT LSSGLPLVEHRLTPALLPRAAARAQMSARTVKRTLDEISPELLPAILLLRGERACLLLG FT TAPGGKYLISHPELGASAVEMDADLLQEDYTGLACFVRPQFRFDARAPEVVKVRSRHWF FT WAAIAENRRLYRDALIAALLINVFAMAMPLFTMNVYDRVVPNNAIETLWVLALGIGLVV FT LFNLVLTTARAHVVDSASKRVDIRLSAQIMERVLDLRMEGRPVSVGSFAANLRSFESIR FT DFIASASITTLVDLPFTLLFLAALAWISPWLIAPPLVAIALILLVSLAAQARMETLTMA FT SYQASAQRNATLVEALAGFEAVKTLNGQGAIQRNWERSTEFIAQNGGKLKLISASTVGF FT VQAMQQLVSVAVVIIGVFQAQESAMSMGGIIAASMIAGRCLTPFGQVAALLMQYQNART FT SLGSIDNYMNLPVERPAGTEFLHRPVFQGGIEFRDVTFAYPGASQPALKKVSFKLAPGE FT KVGVIGRIGSGKTTLEKLALALYQPTEGAVLVDGVDVRQIDPADLRRAIGHVPQDPVLF FT YGSLRHNLAMGAPHADDASILAAANAAGVTEFANVHPNGFDMMIGERGESLSGGQRQSV FT AIARALINDPPILLLDEPSSNMDHQSESQLRKRLKAASADKTILLVTHRTALLDLVERL FT IVIDNGHIVADGPKEQVVEALRQGRVGRGS" FT misc_feature complement(1281465..1282019) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 4.4e-52" FT misc_feature complement(1281975..1281998) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1282236..1283045) FT /note="HMMPfam hit to PF00664, DE ABC transporter FT transmembrane region, score 0.0011" FT misc_feature complement(join(1282308..1282376,1282575..1282634, FT 1282647..1282715,1282857..1282925,1282968..1283036)) FT /note="5 probable transmembrane helices predicted for FT BB1189 by TMHMM2.0 at aa 177-199, 214-236, 284-306, 311-330 FT and 397-419" FT CDS complement(1283542..1283757) FT /transl_table=11 FT /locus_tag="BB1190" FT /product="hypothetical protein" FT /protein_id="CAE31688.1" FT /translation="MSASNDNGFSKLDADFVRVLEDLIDALIKNGTLRLTDLPPQAQRK FT LTERKRHRARLAEDLDLLDDDDGQVL" FT CDS complement(1283768..1285237) FT /transl_table=11 FT /locus_tag="BB1191" FT /product="putative outer membrane protein" FT /protein_id="CAE31689.1" FT /translation="MPTFSFKRTTAIVAVLFAPAAYAQQQAGTTLNQVVEQTLLSNPEI FT QAKYHDFRASMEGQNVARGGLRPQVNAQGFVGKEWRSNVPDRGSYNWSRPGYSVELRQL FT IFDGFRTSNDVKQAGYDKLGRFYELLATSDSTAYSAVQAYVDLQRYREMELLARQNYSL FT HEDTLKQIRERAESGVGRRVDLEQAGGRLALAQTNLMTESANLIDVQQRFQRITGMTPA FT VDLQPVPDVAGKLPQQPANFDDSLRMNPSFLAKQAYLQAANAGVASAKGAFSPKFEFVA FT ATGRDREQPEPQYRDVQSSSVQLVMSYNLYRGGADSARVRQTAEQSYAARDVRDYTCRN FT VQQDLAVAWNNIVRLREQIPFLRDHEIATAKVRNAYREQFQIGQRSLLDLLDTENELFE FT SRRALANGMADLQLAQYRWLALSHKILPALSVQPARDEMPEENAVLETTDEVLKLCNSP FT VPDVSRLAPVQVIYNSGAKPPTFVPADKARP" FT misc_feature complement(1283936..1284523) FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 4.4e-19" FT misc_feature complement(1284551..1285147) FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 2.2e-24" FT misc_feature complement(1285169..1285237) FT /note="Signal peptide predicted for BB1191 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.974 between residues 23 and 24" FT CDS complement(1285589..1286779) FT /transl_table=11 FT /locus_tag="BB1192" FT /product="conserved hypothetical protein" FT /protein_id="CAE31690.1" FT /translation="MAAETLAGHGLRIDVYDAMPSVGRKFLLAGRGGLNLTHSEAPQAF FT GARYGARADWVAQWLAQWDAQALRAWAHGLGVETFVGTSGRVFPREMKAAPLLRAWLAR FT LRGAGVGFHMRHRWLGWPAGEPASPQALRFGTPDGALAVRADAVVLALGGASWARLGSD FT GAWTGTLREHGVAVAPLRPANCGFEADWSEPMRQRAAGQPAKAVAMALAPDGPWRRGEF FT VVTDSGIEGSLVYACSAGLRDAIDVHGAATAWLDLLPDWPAERVAAAVMHPRGARSMSS FT HLQSRLGIKGVKAALLRECAGAEAYADAGLLARRIKALPLRLLRTRPIDEAISSAGGVE FT RAALDARLMLAEAPDVFCAGEMLDWEAPTGGYLLTAVMASGVVAGRGVLAWLRDGL" FT misc_feature complement(1285634..1286686) FT /note="HMMPfam hit to PF03486, DE HI0933-like protein, FT score 1.4e-72" FT CDS 1287034..1287360 FT /transl_table=11 FT /gene="arsR" FT /locus_tag="BB1193" FT /product="probable ArsR-family transcription regulator" FT /protein_id="CAE31691.1" FT /translation="METNAAIKALVALGHASRLTAFRLLVQAGAEGVAAGQLAQAMGIA FT PSSLSFHLKELVQAGLLEARQDGRFVIYAARYDTMAGLIAYLTDNCCQGAPCDAAPCTR FT EPRA" FT misc_feature 1287061..1287303 FT /note="HMMPfam hit to PF01022, DE Bacterial regulatory FT protein, arsR family, score 7.7e-07" FT misc_feature 1287130..1287195 FT /note="Predicted helix-turn-helix motif with score FT 1261.000, SD 3.48 at aa 33-54, sequence FT VAAGQLAQAMGIAPSSLSFHLK" FT CDS 1287357..1288637 FT /transl_table=11 FT /gene="arsB" FT /gene_synonym="arsF" FT /locus_tag="BB1194" FT /product="arsenical pump membrane protein" FT /protein_id="CAE31692.1" FT /translation="MITAAVIFLFTLTLVIWQPRGLGIGWSACLGAAISLATGVVHWSD FT IPVVWGIVWNATAAFIAIIIVSLLLDEAGFFEWAALHVARWGRGRGRMLFAWIVLLGAA FT VSALFANDGAALILTPIVMAMLAALGFGAGATLAFVMAAGFVADTASLPLIVSNLVNIV FT SADYFDIGFNRYAAVMIPVTLVSVAATLAVLLLRFGASVPARYDASQLKAPRAAIRDPR FT TFRAGWMVLALLLVGFFGLEPLGVPVSATAAAAAAVLLAVAGRGHFISTRKVMREAPWH FT IVVFSLGMYLVVFGLRNAGLTQSLADLFGWFASHGLWAATYGVGLVTALLSSVMNNLPT FT VLVGALSIDASSASGAAREAMVYANVIGSDLGPKITPIGSLATLLWLHVLARKGVRISW FT GYYFKVGIVLTLPVLLLTLGALALRLS" FT misc_feature 1287363..1288631 FT /note="HMMPfam hit to PF02040, DE Arsenical pump membrane FT protein, score 2.9e-282" FT misc_feature join(1287417..1287485,1287498..1287566,1287627..1287686, FT 1287696..1287764,1287783..1287851,1287879..1287947, FT 1288026..1288094,1288104..1288163,1288200..1288259, FT 1288287..1288355,1288557..1288625) FT /note="11 probable transmembrane helices predicted for FT BB1194 by TMHMM2.0 at aa 21-43, 48-70, 91-110, 114-136, FT 143-165, 175-197, 224-246, 250-269, 282-301, 311-333 and FT 401-423" FT CDS complement(1288678..1289643) FT /transl_table=11 FT /locus_tag="BB1195" FT /product="putative exported protein" FT /protein_id="CAE31693.1" FT /translation="MHSFKSALLASAVLALAAGTAGAADTYPGDKPIKIVAAFSPGSAT FT DTSARIIAEELRKDLGANVIVENKPGAQGLIGTEYAVRQPGDGYTLTIASSSLNSINPG FT LFKKLPYDAQKDFTHISRLTTMPMLVLVRGDGDIKTLDQLVQKAKAGSLNYGYGSPGGQ FT VGAVAFNNIAGIRAEGVPYKSQPPALTDLAGGQVDYVLGDLSVATPLLRAGKIRALAVS FT TEQRLPDLPEVPTFAETDYKAFDLVVWVGLSGPAGIPPEVAQRLNDSVNKALARPEIQE FT KFKGLGMTTAPNTLAQQQQFVQSQLDTWGRRMREANIQPE" FT misc_feature complement(1288690..1289502) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.2e-76" FT misc_feature complement(1289575..1289643) FT /note="Signal peptide predicted for BB1195 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.983 between residues 23 and 24" FT CDS complement(1289687..1290823) FT /transl_table=11 FT /locus_tag="BB1196" FT /product="conserved hypothetical protein" FT /protein_id="CAE31694.1" FT /translation="MQSSDSGGALAGLRVIDASRVLAGPFCGQMLGDHGAEVIKIESPE FT GDECRGFGPPFVDGASAYFRAVNRNKRSMVLDLNSEAGRETLWQLLETADVLIENFKAS FT TLRAWGIADPAEITARFPRLVHCRITGFGDDGPLGQLPGYDAAVQAIAGLLSINGEAGG FT PPVRLGVPVVDLTTGMNAAIAVLLALQARHRTGRGQMADVALYDSAVSVAHPFLTNYLA FT SGKTPGPSGNGHPNIVPYNVYRTRTCPLFIAVANDRLFAKLCAQLGVAELAADARFATN FT GQRVVNREALDAALSQAFAQVDGEPFGQQLLAQNVPAAPILDIAAVAAAPHTAHRRMVV FT QQPDYTGPGIPIKLSHTPAAIRRGPPALGEMAAPPPKR" FT misc_feature complement(1290032..1290604) FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 1.1e-53" FT CDS complement(1290853..1291908) FT /transl_table=11 FT /locus_tag="BB1197" FT /product="hypothetical protein" FT /protein_id="CAE31695.1" FT /translation="MMMQNPQQDERAWRAVAEWYHAYFTGIVLSTVTRRGTPRAAELVY FT EIFCRQRNQRFLAGLEKLGIAHLPPAVAAAQYHYLSNHIGGVAVQYMYESDRKAWIRYS FT APRWIWSGTALCGIPSEVSRAMLAGWHAQNGVTLNNPRLGFVCTKQAADGQSGLEGYYY FT EYDRDLLPHERLRFARNEDAPDFDPAAAPVLPTATWPATRLAKASRNYAMEYVRTALPT FT AVTLWGPDEATHLLRVTAHMIGMQFYHETARALGFEPDGTAAQFARFMQALGQAQGDAC FT EVVEADGEARVRQAGWTLMDEVEDAHPCVAQAWQGLLTGALDAHNHRLALQGTVRRGAA FT GHEFEWRIARA" FT CDS complement(1291923..1292570) FT /transl_table=11 FT /locus_tag="BB1198" FT /product="putative TetR-family transcriptional regulator" FT /protein_id="CAE31696.1" FT /translation="MKARAAVAYEEMPLRQVELLDAAARAFTEMGFSAATIDSVADLIG FT VTKGSVYYYYRSKTDLFFAVHRRAMQLNLDAVEPLAADLSVTPARRLWNMAHAHTHLMM FT AYLPYQRVTVQGIELRLAGRTTAGQRAELEELVQLRDRYESLFRAVVEAGVAAGQFRAA FT PPALAVKPLLGALNWTTLWYRPREGETEAERESIARGIADAIVGSVMPLPAI" FT misc_feature complement(1292244..1292276) FT /note="PS00133 Zinc carboxypeptidases, zinc-binding region FT 2 signature." FT misc_feature complement(1292376..1292516) FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 4.3e-14" FT misc_feature complement(1292403..1292468) FT /note="Predicted helix-turn-helix motif with score FT 1385.000, SD 3.90 at aa 35-56, sequence FT ATIDSVADLIGVTKGSVYYYYR" FT CDS complement(1292573..1293739) FT /transl_table=11 FT /locus_tag="BB1199" FT /product="probable acyl-CoA dehydrogenase" FT /protein_id="CAE31697.1" FT /translation="MHGIWQPALTQEAAAWRDKAAVLTRERFAPLAAEIDRDQRYPEEH FT LAPLRESGISGMFVPKEYGGGGASLTSVIAVVETVAQGCASSAAILAALSLGAFPVLLG FT GTAAQKSALLGGLAREGRAVNFALSERGAGSDAGAVQATAEREGAGWRIRGEKCWLGNG FT GHSHHFIVFARTGPEGQRNNISAFVVAREAEGVAVDFYEDKMGIRGTTTTNLKLDTWVA FT EDALVGELGHGLKLALATLTIGRVVVAAQANGIALCAYAEACDFAVSRETFGRSIIDHQ FT GIGFKLADAMTGLSSSRMMVYEAARAYDAGEDISTLGAMAKLLASEVSHTVVDDAMQVL FT GGRGYVKPSAAERCYRDQRITEIYEGTSEIQRVVLARAIKKSVLAARG" FT misc_feature complement(1292600..1293049) FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.6e-58" FT misc_feature complement(1293059..1293361) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 1.8e-22" FT misc_feature complement(1293323..1293361) FT /note="PS00072 Acyl-CoA dehydrogenases signature 1." FT misc_feature complement(1293365..1293715) FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 1.3e-16" FT CDS 1293953..1294690 FT /transl_table=11 FT /locus_tag="BB1200" FT /product="probable short-chain dehydrogenase" FT /protein_id="CAE31698.1" FT /translation="MEFQGKAALVTGGTRGIGAAIVRRLAQKGAAVAFTYASSDRAAAE FT LARELGASGARILAIKADSRDPLAVRAAVAQTARELGGLDILVNSAGVFPAGPIEDATL FT EQVNDTLAIHAAAVFVASQAALAHMGEGGRIISIGSCFAQRVPYGGVTLYAMSKSALIG FT FTKGLAREVGPRGITVNIVDPGSTDTDMNPADGPTVSAELELMAVKRYAQPDEIAAAVG FT YLAGAESQFITGASLAIDGGFTA" FT misc_feature 1293962..1294681 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 5.6e-70" FT CDS 1294693..1295028 FT /transl_table=11 FT /gene="sugE" FT /locus_tag="BB1201" FT /product="putative chaperone" FT /protein_id="CAE31699.1" FT /translation="MPMPPHTAWMLLALAGALEIVWALALKQADGLTRLWPSLIGISVA FT MLSLVLLALALRHLPVGTAYAIWVGIGAFGVAVFGTLVLGEPMPWAKLLFLALIGIGVA FT GLRMIEP" FT misc_feature join(1294702..1294770,1294795..1294863,1294873..1294941, FT 1294960..1295019) FT /note="4 probable transmembrane helices predicted for FT BB1201 by TMHMM2.0 at aa 4-26, 35-57, 61-83 and 90-109" FT misc_feature 1294711..1294989 FT /note="HMMPfam hit to PF00893, DE Integral membrane protein FT DUF7, score 5.5e-29" FT CDS 1295025..1295645 FT /transl_table=11 FT /locus_tag="BB1202" FT /product="putative TetR-family transcriptional regulator" FT /protein_id="CAE31700.1" FT /translation="MSAKPRAAPTRKIGRPRAFDRDAALLAAMRTFWTQGYEGTSIQDL FT VQAMGVNKPSLYATFGCKEEIFREAIELYDRVEGRATSQSLAQARTAREAVETMLRANA FT RAYAVAEGPRGCMIVLSSLLGAPENARVRAYLADNRLAGETLLKDRLAQGIAQGDLAPT FT ADIGQLAAFYTTVLEGLSIQARDGAGADKLNTIIDAAMLAWPA" FT misc_feature 1295094..1295234 FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 3.6e-11" FT misc_feature 1295142..1295207 FT /note="Predicted helix-turn-helix motif with score FT 1306.000, SD 3.64 at aa 40-61, sequence FT TSIQDLVQAMGVNKPSLYATFG" FT CDS complement(1295706..1296590) FT /transl_table=11 FT /locus_tag="BB1203" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT ra1150 or sma2109 SWALL:Q92XU0 (EMBL:AE007300) (308 aa) FT fasta scores: E(): 2e-76, 70% id in 290 aa, and to FT Methanosarcina mazei putative nucleoside-diphosphate-sugar FT epimerase mm0150 SWALL:AAM29846 (EMBL:AE013236) (289 aa) FT fasta scores: E(): 8.1e-28, 32.75% id in 290 aa" FT /protein_id="CAE31701.1" FT /translation="MGSARSVVLVVGAAGKFAGLVVPALRRRDVAVRALVRDEARAAAA FT RALGATEIAIGDLRDAASLAEATRGVDGVFHIGPAFAADEAAMGVALVEAAQRSGVRKF FT VFSSVIQPTNIRLANHASKVAVEDALYSSRLEYTILHPANFMQNIGLAWASIRDDGCFG FT EPFPKEARIARVDYRDVAETAAIALTQDRLAFATLELCAGMYSRMDIVAALSEALGSPV FT AALQPGFGEWAARARLPYDEAQLQLLAKVMEHYQSYGLGGNSLALRAALGREPRSLRAY FT VQDLVAGQNGARP" FT misc_feature complement(1296516..1296572) FT /note="1 probable transmembrane helix predicted for BB1203 FT by TMHMM2.0 at aa 7-25" FT CDS 1296698..1297651 FT /transl_table=11 FT /locus_tag="BB1204" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti probable GstR FT transcriptional regulator ra1149 or sma2107 SWALL:Q92XU1 FT (EMBL:AE007300) (301 aa) fasta scores: E(): 4.1e-82, 71.18% FT id in 295 aa, and to Synechocystis sp. transcriptional FT regulator slr1245 SWALL:P73778 (EMBL:D90909) (302 aa) fasta FT scores: E(): 1.8e-37, 37.5% id in 288 aa" FT /protein_id="CAE31702.1" FT /translation="MSRLEDLETFIHIAEAGSLTQAARRLDRSLQAVSRTLAALEQDLG FT VQLVHRSTRRLALSEAGQAYYHRIKPAIAAIAQARLDIAERRAAPSGTLRVGAPVLFGP FT DFLVPVIADYMRAYPQVHVDLQLTDAFADLADEGLDLVVRIGDLPDSGLQGRRLGALRR FT VVFGAPAYFAQHGRPTHPEELRQHACIVRTVDPHPGRWVFQIAGKRRTVGVRGAFRANT FT MAAIYSAVSAGLGIGYSPLWQIQRLLDAGQVETVLEDFEPRPVPIHVLWQENRLMPAKV FT RAFVDCLVAGGRLEGGGGGESCRLRCLQARVVRFPA" FT misc_feature 1296707..1296886 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.6e-18" FT misc_feature 1296746..1296811 FT /note="Predicted helix-turn-helix motif with score FT 1358.000, SD 3.81 at aa 17-38, sequence FT GSLTQAARRLDRSLQAVSRTLA" FT misc_feature 1296749..1296841 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1296956..1297576 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.3e-55" FT misc_feature 1297633..1300495 FT /note="Low %GC region" FT CDS complement(1297681..1299258) FT /transl_table=11 FT /locus_tag="BB1205" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE31703.1" FT /translation="MKPINLAFLRIAKRAERQDDDVLHKTFVDFGSVFTAFSSVDHQVV FT FGRRGTGKTHLLTVLRQAKRSVGETAIQIDMRNLGSAGGVYADASVPLTQRATRLLVDV FT LAAIHTNILEQAIEHDEVINLGKIGKPLDEFFDAHSSVKVVGATTLEAMGSTEDSGNAQ FT AKLGVSIGTVSSFFSGEAKTFSESKETIALKKIITGQEIPRVNFGSVGNALRKLVETLP FT KGRLWILIDEWSEVPLDLQPYLADLIRRAILPIRGATVKIAAIEQRSRLLLPEATIGNI FT GLELGADVSAAINLDDYMVFDNDEDKAVAFYKALVLKHVQVALEAENISAPNNEAELIS FT QGFTQGNAFDEVVRACEGVPRDAIHILSHAAQRADDDTISVSGVRIAARQWYQGSKDAA FT VSAHEQARSLLQWIVDKVIKERQTKAFLLEIGTRDALIDFLYDERVLHVLRKGVSAKDE FT PGKRYQVYGIDYGCYVDLINTARAPQGVLDLGDNEPDIADTVPKTDFRSIRRCILNLPE FT FYGNPRTL" FT misc_feature complement(1297792..1297932) FT /note="HMMPfam hit to PF01468, DE GA module, score 0.56" FT misc_feature complement(1299097..1299120) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1299607..1300356) FT /transl_table=11 FT /locus_tag="BB1206" FT /product="putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE31704.1" FT /translation="MEPCHRTVMNKKFIASIACIAVACMILVVALYINTFGTNRSLEHA FT TWGMFGDYFGGILNPVFALGAFLGVLWSLDMQTKQLKQLSLDKQGGEILVVVKDIDTRI FT GELLMTSVGLIGQDDLFIHHMVSESERGASTLKNSDSYIKFVSTAKQSGTLIEASIREL FT RNQIIHMQNFLARYPQVSSDSYAPIVEYYINKTRRIIPMLHEIERLPNSVFDFFMTERA FT RKNSASVPRNTHRQPQNIPQPMRNGYE" FT misc_feature complement(join(1300141..1300209,1300252..1300320)) FT /note="2 probable transmembrane helices predicted for FT BB1206 by TMHMM2.0 at aa 13-35 and 50-72" FT misc_feature complement(1300267..1300356) FT /note="Signal peptide predicted for BB1206 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.769) with cleavage site FT probability 0.293 between residues 30 and 31" FT misc_feature complement(1300285..1300317) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1300601..1301395 FT /transl_table=11 FT /locus_tag="BB1207" FT /product="putative plasmid-related protein" FT /protein_id="CAE31705.1" FT /translation="MPPKLPSLHSQFLKKIHASVAADPRLTALLAAGSYIHGGFDEYSD FT LDFVIVCDDRSYDEVMAARLEFAQRMGGLLSAFTGEHVGEPRLLICLYGPQLLHVDFKF FT VTLGDLDRLVERPAVLFARDAQAVEARLDAAAIAWPEASPDWFERRAWIWLHYGASKLA FT RGELYEAIGILGFFREQVLGPMLHRRAGRPQRGVRRIEAVAGEAGAQLAATMPRPDRAS FT VRAALLAAAALYVELREDAPPSEAVCGMPEALYGYVGRHVGD" FT misc_feature 1300625..1300939 FT /note="HMMPfam hit to PF01909, DE Nucleotidyltransferase FT domain, score 0.013" FT CDS 1301551..1303047 FT /transl_table=11 FT /locus_tag="BB1208" FT /product="methyl-accepting chemotaxis protein" FT /protein_id="CAE31706.1" FT /translation="MRTASRLLEDSYRRADRAMLPLLWVLVIVGLCMAPQYGRWTAAVT FT VGVLAAGLPTLLILWRPGKLSTRLAIACGLMALAGLHIHLMSGMTEIHFGIFVLLSLLL FT AYRDWRTILCAAVVIAVHHLSFNFLQQWGYGAICFTEPSLGMVLLHAAYVVVQAAALGW FT LAWRMERAAVAAEELARLSARIGREPGVFDLRFGGSEMESGLGRAFKTTMDAVHRTMSE FT VRETATALSAASRDMMQGNLALEERSRTQAESLARTVASMRDLAANVHANAAHALQAGQ FT LTDQARQSVGTGSTAVAGVATVMGEIQQEAQKISEIIGVIDSIAFQTNILALNAAVEAA FT RAGESGKGFAVVAFEVRALAERSAGAAREIRGLIEGSLEKTGKGFRQADNAAGMIREVV FT ASIDEVAGVVGQIGDAGRAQGTDIEEVNRVVAKMDELTRQTAELVAQAASASTALQGQA FT AQLLQAVGVFRLQDRRPSDEPVASTGVESFRLAAPALAGL" FT misc_feature join(1301608..1301661,1301671..1301730,1301743..1301802, FT 1301812..1301865,1301884..1301952,1301980..1302048) FT /note="6 probable transmembrane helices predicted for FT BB1208 by TMHMM2.0 at aa 20-37, 41-60, 65-84, 88-105, FT 112-134 and 144-166" FT misc_feature 1302265..1302963 FT /note="HMMPfam hit to PF00015, DE Methyl-accepting FT chemotaxis protein (MCP) signaling domain, score 2.9e-62" FT CDS complement(1303257..1304174) FT /transl_table=11 FT /locus_tag="BB1209" FT /product="probable LysR-family transcriptional regulator" FT /protein_id="CAE31707.1" FT /translation="MALDRIEAMRAFCRIVELGSFTRAADSLGVASTTLSGQIQVLERL FT LDIRLLHRSTRKVHPTNEGLAYYQRARKVIEDIDDLEASVSISRAVVKGRVAVEMPTPV FT GIHLVIPALHGFTERYPHIHLDIGCSERVVGLMQEGIDCAIRGGDIADQDLIARRVGQM FT RFCLCAAPAYLDAHPAITHPAQLARHRHLGFRFPGTGKRFVATLRKQRDSHPLDHPPHV FT YFNNGTAVTAGAAAGLGIAALPRAEVRHLLEAGALREILPDWTLTSMPMSVVYPQTHQL FT SARVQVFVQWVAELFEGDGLWKDA" FT misc_feature complement(1303284..1303910) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2.3e-44" FT misc_feature complement(1303980..1304159) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.8e-18" FT misc_feature complement(1304025..1304117) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1304055..1304120) FT /note="Predicted helix-turn-helix motif with score FT 1184.000, SD 3.22 at aa 19-40, sequence FT GSFTRAADSLGVASTTLSGQIQ" FT CDS 1304283..1304726 FT /transl_table=11 FT /locus_tag="BB1210" FT /product="putative exported protein" FT /protein_id="CAE31708.1" FT /translation="MGIPINRGVIAALCAAALSLAAPAAWAHGGGERVAVNFEEAIPNI FT PGKSLVAVEVAYAPGAASAPHLHAKSAFIYAYVVSGAIESKVNDGPARVYRAGQSWSEP FT PGASHSISRNASRTEPARLLAVFVVDSGDKALTVPVADQGVKP" FT misc_feature 1304283..1304363 FT /note="Signal peptide predicted for BB1210 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.935 between residues 27 and 28" FT CDS 1304723..1305172 FT /transl_table=11 FT /locus_tag="BB1211" FT /product="putative membrane protein" FT /protein_id="CAE31709.1" FT /translation="MTMRIDYNQVAPGAAAALAGVYGYVMKSGLAPALVELVYLRVSQI FT NNCAYCLDMHTRDLLKQGVAVEKLALLQAWREAGGLFDARERAALAWAESVTQVAQTGV FT PDQDYQDARAVFGEKELVDLTVAIGLMNAYNRMAIGFRNTPKAAV" FT misc_feature 1304759..1304827 FT /note="1 probable transmembrane helix predicted for BB1211 FT by TMHMM2.0 at aa 13-35" FT CDS complement(1305174..1306607) FT /transl_table=11 FT /locus_tag="BB1212" FT /product="putative exported protein" FT /protein_id="CAE31710.1" FT /translation="MPMPRSRTVVRLAAAVLVIALAGYAGAILWAEQAWTYSTPPSRAI FT GQAPDGTAAAVTPYCTGITRAGAHTWMLGRDAPGFITRQNAGPQANWLSAQGVSGQPPE FT RDIRARDYSALWRLDADGSFRIAAAVTDSACLAATPDGASVFLLSTLNSAALRAQRGTQ FT PGVQQTLVFRSDDGGASWQWQEQGLFAQAALVAPHQDIHWIDARRAWSVRDIQDMREDD FT RRKTPAGFPTGWYYSEDQGRTATQVYSETSLFPAPADFGPALHNARLFDPGYDSDQSHL FT AVLDADRALGWYTHWIGYQSAQGRAIAYLTTQVLLQRQGQDWRIAGITRQRGVRIAQLA FT QAPNGAIHAVLTRAGGNATLARLDPATLEWTDERALPRVFPLGLPAYQTATALRVSNQA FT QVVSLWADHTVPRLLYPWGDAPASISATGEFWTADGGQSWRRLPQRSPDDLLGMDGARN FT VLFWPEDDGKAISGYELAK" FT misc_feature complement(1305285..1305320) FT /note="HMMPfam hit to PF02012, DE BNR/Asp-box repeat, score FT 21" FT misc_feature complement(1305870..1305905) FT /note="HMMPfam hit to PF02012, DE BNR/Asp-box repeat, score FT 1.8e+02" FT misc_feature complement(1306059..1306094) FT /note="HMMPfam hit to PF02012, DE BNR/Asp-box repeat, score FT 4.7" FT misc_feature complement(1306527..1306607) FT /note="Signal peptide predicted for BB1212 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.497 between residues 27 and 28" FT CDS 1306703..1307131 FT /transl_table=11 FT /locus_tag="BB1213" FT /product="putative membrane protein" FT /protein_id="CAE31711.1" FT /translation="MARESRTNPRAAGRNALGARRFWFVSLAGIVLASGYDILQALQGS FT AAAAQRLVVPVLLLLWLYRGSDWARWILMAMLLGFGVLNMYLGTGMLRYGVQNWLHIYV FT FSAFMVATGLYLALAGKDFARYRSHVAARRARRAASQG" FT misc_feature join(1306763..1306831,1306841..1306894,1306913..1306969, FT 1306997..1307056) FT /note="4 probable transmembrane helices predicted for FT BB1213 by TMHMM2.0 at aa 21-43, 47-64, 71-89 and 99-118" FT CDS 1307306..1308283 FT /transl_table=11 FT /locus_tag="BB1214" FT /product="putative exported protein" FT /protein_id="CAE31712.1" FT /translation="MLGIKRWTRALCGLGMVFSMSAHAAGDFPSQSVRLIVPFPPGGSV FT DIVARTYAQELQGILGQTVVVENRAGANGIIGANAVANAKPDGYTLLLASSGTFTISPA FT LQKVPFDPFNSFDYLGLVVNYANVLLVNTESRYQSLGDLIAQARSQPGAVTFGSSGAGG FT SNHLGGELLAYQAKVKMLHVPYKGNAPAMTDLQGGRIDFMFDITTTAKGHIEGGKVRPL FT AITSAQRNPAFPSVPTTAEAGVAGVEFEGWFGLMAPAGLPQDVARKLVGANQKIVGGAA FT FGQKLRDWGYSVPSTDPQVMRERVKADLDSVTTLVKNADIKAND" FT misc_feature 1307306..1307377 FT /note="Signal peptide predicted for BB1214 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 24 and 25" FT misc_feature 1307447..1308268 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.4e-98" FT misc_feature 1308089..1308118 FT /note="PS00215 Mitochondrial energy transfer proteins FT signature." FT CDS 1308285..1309943 FT /transl_table=11 FT /locus_tag="BB1215" FT /product="probable thiamine pyrophosphate dependent enzyme" FT /protein_id="CAE31713.1" FT /translation="MKYTVGALLADCLAANGVDTVFGIVSVHNMAIMDAIAARPALRMV FT MTRGETGAAHMADGHARARQGLGVVITSTGPGATNAVPGLAEAQFAGSPVLHITGQTAT FT PYLGSRRGTVHDMPSQHDMLRSVGKAVLRVTDADSALAVIQEAIRVCLQAPAGPVSLEI FT PVDLQGREVAMPDPASLKVSPAAAPPPEPTAIAELVRRIKAARRPMLWVGAGAKGAASQ FT LAALVDLGFGVVSSWSGRGVVDDHHPRNLGALNGAGSPAVLDLYRSADLMLVVGSRLRG FT QETDNQAVPLPTPLLRVDIDAARDNLGYANELFVQGDCAEVLDRLLAGLADGLDIDPAF FT DADVRAARQAAIDDYLGRLGPYRDFPAMLRRVLPDDALWVRDITKSNSTWGHRLFPLRK FT AHQNIYPVSAGIGQGLQLGIGAALASPGRKTAVLTGDGGFYFNMTELWTAAQERLDMLV FT IVMNDQGYGAIRGIQDVVCDGRHRYDALGGPAFADIAQLAGAKFWKVEAARDFERIAAE FT AYASPGLCVVEVDMVAIGALPMYYPYIKAGTPRQD" FT misc_feature 1308285..1308335 FT /note="Signal peptide predicted for BB1215 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.855) with cleavage site FT probability 0.837 between residues 17 and 18" FT misc_feature 1308285..1308812 FT /note="HMMPfam hit to PF02776, DE Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 6.2e-42" FT misc_feature 1308855..1309304 FT /note="HMMPfam hit to PF00205, DE Thiamine pyrophosphate FT enzyme, central domain, score 4.9e-07" FT misc_feature 1309344..1309871 FT /note="HMMPfam hit to PF02775, DE Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 2.4e-08" FT CDS 1309959..1311386 FT /transl_table=11 FT /locus_tag="BB1216" FT /product="probable aldehyde dehydrogenase" FT /protein_id="CAE31714.1" FT /translation="MSTQYRSFVAGQWQDGGEPVALYNPSDLQEEAGVYMHAPVEMVNQ FT AVRAAEEALDAWRGLHAMARSRLLDGIADGLVRRRDELAMAIAREQGKPLRDALAEATR FT AADIFRYFASETIRQKGYTYASIRPGVRVEVQRNPVGVVALVTPWNFPVVIPAWKAAAA FT LAYGNTVVMKPSEIAPCGAWILADVMREAGLPAGVFNLVLGAGQAGAALVAHEAVAAVS FT FTGSVATGKRIAAAAAGKRIQLEMGGKNPLIVLDDADLDTAVACAIDGAFLYAGQRCTA FT SSRIIVTEGIHAAFVKRLLAQTASLAVGHALDEATVIGPVVNAEQFEKNRRYADLARQE FT GGTVAGGRALSRPTRGHYFEPCLVTGLDNSATVCREEVFGPFACVLTARDYEHALAIAN FT DTPFGLSSGLCTTSMKHAQHFKAHTKSGLASINTSTSGVDFHVPFGGNGASSYGPREQG FT EFAIEFFTTLRTVYIGD" FT misc_feature 1309992..1311380 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 1.6e-155" FT misc_feature 1310688..1310711 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT misc_feature 1310772..1310807 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS 1311428..1312627 FT /transl_table=11 FT /locus_tag="BB1217" FT /product="conserved hypothetical protein" FT /protein_id="CAE31715.1" FT /translation="MLHNALRGVKVLDLSRILAGPWCTQNLADMGAEVIKVEQPGSGDD FT TRGWGPPDQTSPDGQASMSAYFMACNRGKQSIELDFSRPDGAQTVRRLAAEADILVENF FT KAGGLAKYGLDYASLARVNPRLIYLSITGYGQSGPMAGKPGYDYVFQGMGGLMSYTGQP FT DGMPGAGPLRTGVAVVDLMTGMYATSAVLAALRQRDQTGQGLPLDICLLDVAVALNANQ FT GANYLVSGKAPQRTGNAHPNCAPYEVFACADGHLILAIGNDGQFARFCKVVGHPEWAGD FT ARYATNSARLEHMPTLRPMLAAALAGAPRQAWTDAFDAAGVPWGPIHTLDEVFAHPQVR FT HRELLQTVRHPVLGEMRLVRNPLLAGAPAHALQACPPLLGEHSAAVLGHDAAAARATES FT " FT misc_feature 1311656..1312237 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 1.4e-66" FT CDS 1312644..1313435 FT /transl_table=11 FT /locus_tag="BB1218" FT /product="probable enoyl-CoA dehydratase" FT /protein_id="CAE31716.1" FT /translation="MTNAVYSGAHAQAVIEDNGIATLTIRDAGVLNILGTPVIESLREA FT LAWLKEQPGARVVILRGASDRAFIAGADIAEMAQLDEARARRFISRLKALCDDVRHLPV FT PVIARIPAWCLGGGLEFALACDLRVCADTAQFGMPEVKVGIPSVIHAALMPRLIGAANS FT AWMLLAGELIDARQALAWGLVTRSVPAEELDSAVRQMALGLAQLGPAVLRQQKRLLRRW FT ENMSVDQAIDDSVAEFGAAFNTGEPQKFMNEFLESKKNRGR" FT misc_feature 1312704..1313210 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 5.1e-39" FT CDS complement(1313444..1314361) FT /transl_table=11 FT /locus_tag="BB1219" FT /product="LysR-family transcriptional regulator" FT /protein_id="CAE31717.1" FT /translation="MRYELTDMRLFVAIADARSLSGGANAVHLTTSAASYRLKNLEQAL FT GVPLFKREARGMELTAEGEFVLKHVRAILAGVETMQGEVSSFARGIRGSVKLFANSSSL FT NGFIVPSLGRFLAANPQVNILLEERPSNTIEAAIAGHEADIGIFAGQSQSVGVLPTRYA FT LDELVIAAPRAHPVAAGGPVKFAEVLDIEFVCMSRASSNFVFLRDMAKLTGKSPRVRIH FT AHTFEALLTMVQAGVGVALVPRSVAAEALDKQRIAVAPLDEPWARRELTLVTASEGPLS FT PIVKQVTAHLLGDPAVSATRPAPG" FT misc_feature complement(1313474..1314100) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 7.1e-37" FT misc_feature complement(1314170..1314349) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.6e-20" FT misc_feature complement(1314215..1314307) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1314245..1314310) FT /note="Predicted helix-turn-helix motif with score 984.000, FT SD 2.54 at aa 18-39, sequence RSLSGGANAVHLTTSAASYRLK" FT CDS 1314427..1316130 FT /transl_table=11 FT /locus_tag="BB1220" FT /product="putative membrane protein" FT /protein_id="CAE31718.1" FT /translation="MHAPWNPPILQTTPGNTTNATTSRFGGRPQRGAKNVLHNQGRRAQ FT PMQRIVRHVTLGLALAWLALVAGLGWWISQRIVTAQLDRLAASAEYEARTTARVMDRLF FT TEMVSVANMVARQGQVTELAARYRTDPPGAAALTRQQRAALFTRDPLVRKVGDFMNALA FT SDLRYARIYMNNMSDDTVTASNWAEPDSIVGMVYAGRPYLIDALRTGNGYSFGIARLNK FT SPSYFVASRIEDADDTPLGSVTVKFDAPEVALYLTGRHTALIVNPQGRVITASAGPFML FT RNVAALLPPGSVLPPDGEEAPGEPMDVRAAGGAGRAEQWLIDGKPYLVRRQPLSGTHYR FT LLTLASLEHLAPLRTQHVWMTTLVAAVGLVVILLSGQAARQMVMRRQDERYAANYDALT FT GLPNRRAVLAELGRLFALANRLQQRVLVAFIDLDGFKSINDTYGHEIGDKFLVEAGRRM FT SAGLRASDTLGRWGGDEFVVVGLVAPSASTDPDAAAAAMRERLAPLLVGAYRFADCSFD FT YPGASLGVVSVDPAASSVQAVLKDADRLMYADKQARRAAGVMDGEGALPA" FT misc_feature join(1314574..1314642,1315495..1315554) FT /note="2 probable transmembrane helices predicted for FT BB1220 by TMHMM2.0 at aa 50-72 and 357-376" FT misc_feature 1315591..1316094 FT /note="HMMPfam hit to PF00990, DE GGDEF domain, score FT 4.5e-42" FT CDS complement(1316183..1316461) FT /transl_table=11 FT /locus_tag="BB1221" FT /product="hypothetical protein" FT /protein_id="CAE31719.1" FT /translation="MRGAAAGAAAGAAVAGVRGRQHEEIYDRVDDDVKQEYRQNKAKDG FT AAAGMVVGGSRQRQDRRQDRRNDAQQGTAASSAYSTCMQQRGYQVTP" FT misc_feature complement(1316417..1316461) FT /note="Signal peptide predicted for BB1221 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.911) with cleavage site FT probability 0.867 between residues 15 and 16" FT CDS 1316819..1317070 FT /transl_table=11 FT /locus_tag="BB1222" FT /product="hypothetical protein" FT /protein_id="CAE31720.1" FT /translation="MNTLCLAVRPLLVAAACASMAACADHPPRQTGMDYRSPPAAATQG FT ASRAPGSSGQRLTIQSGEGEKLNLPWFIQDTQDWVNSH" FT misc_feature 1316819..1316881 FT /note="Signal peptide predicted for BB1222 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.537 between residues 21 and 22" FT CDS complement(1317095..1317997) FT /transl_table=11 FT /locus_tag="BB1223" FT /product="putative acetyltransferase" FT /note="no significant database matches" FT /protein_id="CAE31721.1" FT /translation="MSLVIRPARGEELARAAALVARSINDLTERHGFGAIAAPRPPDFQ FT AFCLRDDPRGVWLAEDDGEILGFALSWVCDRFWFLAELFVAPGGQGQGIGNELLGRTLG FT HADQAGASTKSLITFAFNTVSQGLYVRHGLLPRLPIHLCSAERASLAQRLPRPALHARP FT IQATPADLELLRELDMASLDVSRAKHHRYLLEEAPGMRGVFLDDGAEPVGYAYVAASGH FT VGPLAVMHAGALPDAFHAALALAAAGQARQITVFVPGASAALAPAVRLGMRFVLPMVLM FT SSHDSGDWSRYLPRNPGFM" FT misc_feature complement(1317593..1317829) FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 2.4e-13" FT CDS 1318123..1318914 FT /transl_table=11 FT /gene="aadA4" FT /locus_tag="BB1224" FT /product="adenyltransferase" FT /protein_id="CAE31722.1" FT /translation="MDLDLASAIEPQLSRACAVLERRLAPHIVAIHLFGSAVDGGLRPH FT SDIDLLVTVDAPPDASTLQALMRELLDVSAFPGASASLRALEVTVLALADVVPWRYPAR FT RLMQFGEWLRDDIRAGVFEAPVFDHDLAILLTKARAHSVALRGPAAQALFAPVPGADLA FT RALRDTVAQWNTPQDWAGDERNIVLALARGWYTAATGGIASKDAAAAWLLERIAPEHRP FT VLRMARAGYLGQAADGLDRCQDAVAGFIACARGEIERLCAA" FT misc_feature 1318147..1318461 FT /note="HMMPfam hit to PF01909, DE Nucleotidyltransferase FT domain, score 1.5e-13" FT CDS complement(1318920..1320365) FT /transl_table=11 FT /locus_tag="BB1225" FT /product="probable amidase" FT /protein_id="CAE31723.1" FT /translation="MDLACPAPHELAYASAAELARLYRARTVSPLDHARAVLAMVDRWN FT PVVNAYCHLDRTLTLREAAASEARWMNNAPLGPADGVTYGIKDILLARGAPTGYGSRAA FT CVAQPATEDAPAAARLREAGGVFVGKTTTSEFGWKGTADNLLTGATRNVWDTRLTSGGS FT SGGAACAAAAGMGTLQVGTDGGGSTRIPASFCGIVGMKATFGRVPAWPAGPMLTLSNVG FT PMARNVADLACLQRIIGQPDPRDWHAVPAPRHERAPPASLQGLRIGLHLDRDACDPEVA FT AVIGQAAERLAAQGARLIDTRLPLDGCDSLIRTHWQAGAAWLVAQIPPQRQALLDPGLQ FT AAAARGHALPLPDYYRTMIGRQKLGETMAAHLAQFDLVLTPTVPILPFAAGREAPEGAA FT SQDWLDWNPYTYPFNLTRHPAISLPAGFSTGGLPVGLQLAAGLYQDEWLLGVAALVEAC FT LGVAGGVPAGVREGSREAARTRA" FT misc_feature complement(1319019..1320272) FT /note="HMMPfam hit to PF01425, DE Amidase, score 2.4e-77" FT misc_feature complement(1319973..1319996) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1320371..1321657) FT /transl_table=11 FT /locus_tag="BB1226" FT /product="putative membrane protein" FT /protein_id="CAE31724.1" FT /translation="MQDALLLFSLMFALFLAGIPIAFSLLLCGAIFLMATGLRPLIVVP FT QRVMAGLDSFPLLAIPLFILMGNLMEKAGLSRRLIDLINMLVGRVHGALGYVTILACAM FT FGALTGSAPATVAAIGAIMMPAMIAQKYPPQLATGVTASAGALGNIIPPSIALILYGAT FT VNVSIPKLFVANIIPGLLMALAFMVTNFLLARRLRVPRQPARACTAGQAARVVWRAVPP FT LLMPVVILGGIYGGIFTPTEAAAVGVALSLVLGLCYRQFTARNLWRVMVGSVETSSMVG FT FILGGAGIFGWILASARIPTLLATELAPILDSQFLYLALLTVFLLLVGCIMDAGASIII FT LAPILVPIGLMLGVDPIHLGVVFCVNLVVGFFTPPFGLNLFTTVSVSRQPYEVVVRGVL FT PFVLAAIVVLFILAYVPGLSLTLVRLMEN" FT misc_feature complement(join(1320413..1320481,1320515..1320583, FT 1320596..1320655,1320668..1320736,1320779..1320847, FT 1320884..1320937,1320947..1321015,1321076..1321144, FT 1321172..1321240,1321301..1321369,1321448..1321516, FT 1321577..1321645)) FT /note="12 probable transmembrane helices predicted for FT BB1226 by TMHMM2.0 at aa 5-27, 48-70, 97-119, 140-162, FT 172-194, 215-237, 241-258, 271-293, 308-330, 335-354, FT 359-381 and 393-415" FT misc_feature complement(1320785..1321261) FT /note="HMMPfam hit to PF00597, DE DedA family, score FT 1.4e-18" FT misc_feature complement(1321553..1321657) FT /note="Signal peptide predicted for BB1226 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.271 between residues 35 and 36" FT CDS complement(1321658..1322161) FT /transl_table=11 FT /locus_tag="BB1227" FT /product="putative membrane protein" FT /protein_id="CAE31725.1" FT /translation="MKRALLAGLARTSQGCDVLCKALAAAFLAIIAIAATAQVAGRYLL FT GYSPPWIEELTRYSFIWMTMLGAAVLVRANGHAVIDILVARFEGRTRRAHAVFVNGAIL FT AAAAILVVQGIEIIAIVHNQLSPAMRVSMGYVYAALPAGGLFIAVQSLAALARDRSAAP FT DAEI" FT misc_feature complement(join(1321697..1321765,1321808..1321876, FT 1321913..1321981,1322039..1322107)) FT /note="4 probable transmembrane helices predicted for FT BB1227 by TMHMM2.0 at aa 19-41, 61-83, 96-118 and 133-155" FT misc_feature complement(1322051..1322161) FT /note="Signal peptide predicted for BB1227 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.947) with cleavage site FT probability 0.389 between residues 37 and 38" FT CDS complement(1322193..1323215) FT /transl_table=11 FT /locus_tag="BB1228" FT /product="putative extracellular solute-binding protein" FT /protein_id="CAE31726.1" FT /translation="MLRTARTTLAIIAAATLLAACDKGGADRPQAASGAQPRTLQLAHV FT SVENEDDMYHHLAAGFAERVARHTNGAVKVQVLGGAQLGGERDVAEGMQLGSIDMSVIA FT SFALGAFEKKAMVFDLPYLFKDYPTAFQALDSSFTDGIEADLEKTGLKVLGWGHGGFRN FT LYNSKQPIRTLADLKDMKVRMPENPIYVDTWRALGVNVTSMAYPELFTGLQQRTIDGAE FT NPTALYYTSRFYEAAKYLSKTEHVYVAIPIVVSARIWTSLAPEQQAAFQQAADEAIAAQ FT RQFLLATEAATEKKLAEAGVAINTDVDKAAFRQAAAPVYERYRNTIDPELVTRAQALAQ FT " FT misc_feature complement(1322235..1323092) FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 2.4e-92" FT misc_feature complement(1323153..1323185) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(1323156..1323215) FT /note="Signal peptide predicted for BB1228 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.989) with cleavage site FT probability 0.624 between residues 20 and 21" FT CDS complement(1323250..1323870) FT /transl_table=11 FT /locus_tag="BB1229" FT /product="2-hydroxychromene-2-carboxylate isomerase" FT /protein_id="CAE31727.1" FT /translation="MHIDYYFSVVSDWAYFGGERLERLARRHGATIRHKPMQLSAVYAQ FT TGGILLQQRSTQRQAYRVTELERWRDHLGIPITLHPRHYPVDDIPASCAILAAQELGMA FT TGDYANAVLRAIWTQERDISEPRTLDEIARGLGLDADAILQRAQAPHIRQRLADNTREA FT IGHGVFGSPFYLCNGHLFWGQDRLPFLEDVLAGRVGACAGAPA" FT misc_feature complement(1323283..1323867) FT /note="HMMPfam hit to PF03046, DE FT 2-hydroxychromene-2-carboxylate isomerase family, score FT 8.4e-28" FT CDS complement(1323921..1324340) FT /transl_table=11 FT /locus_tag="BB1230" FT /product="putative cyclase" FT /protein_id="CAE31728.1" FT /translation="MTWRVDLIAQHIEVENRHLMDEMLATLADENPVRDEVAGRVYRGK FT DQVAARYAELWQAFPDFNVRPVRYTEQEGIVVMEAIYTGTHRGAYLGLPGSGKSFNVRL FT VNVFGFDDERIESETIYIDLAGQLRQLGITAIPRN" FT misc_feature complement(1324044..1324067) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1324542..1325069) FT /transl_table=11 FT /locus_tag="BB1231" FT /product="conserved hypothetical protein" FT /protein_id="CAE31729.1" FT /translation="MSSAFPAPAPDFDQPLQLLAACHGRIERQCATLERLAAHLRAQGS FT DDAARTAAASVMRYFDSAAVKHHEDEEQDLFPALIESMAGSDAVCLRQLVGSLTDEHRA FT LGSAWRRVREVLQQVADGQGAAFAPGQAEDFIAAYRAHLRREDEELLPLAERLLDDGAL FT ADMAQAMRDRRS" FT misc_feature complement(1324818..1325030) FT /note="HMMPfam hit to PF03794, DE Domain of Unknown FT function, score 2.2e-06" FT CDS complement(1325107..1325397) FT /transl_table=11 FT /locus_tag="BB1232" FT /product="conserved hypothetical protein" FT /protein_id="CAE31730.1" FT /translation="MNTPARRWRLIGADGQPLLSAEPGTLGGHRRGRLYGRLDCRAAAR FT ALAQGGYAAQRVFFLDEASAVAAGYRPCAVCMPQAYAAWKTARAHKRAAME" FT CDS complement(1325394..1326029) FT /transl_table=11 FT /locus_tag="BB1233" FT /product="conserved hypothetical protein" FT /protein_id="CAE31731.1" FT /translation="MTPALTPGILQAGAAAIAALDRAPLHARLDRDGWALLPALFDAPA FT IASLLACLPPQGPGVAAGAFAPLHAALYAQLAPLANAWAQTLQTGWRYPASAPAGAQPD FT IRLDIVETGHARPLTQHEPAPDVFPLQLVALLSDPKRDFAGGELVLTEQRPRMQSRPIV FT IPLRQGDAALIPTAHRPCRGAHDFYRASLRQAISPVRAGRRVGLALLP" FT CDS complement(1326026..1327102) FT /transl_table=11 FT /gene="ada" FT /locus_tag="BB1234" FT /product="O6-methylguanine-DNA methyltransferase" FT /EC_number="2.1.1.63" FT /protein_id="CAE31732.1" FT /translation="MNLPVRPAPAYATPEARWAAVQARDPAADSHFVYAVRTTGVYGRP FT SSAARLPRRENVEFFDNAEAARAAGYRPSRHNAADRTVTARQHSALVAAACRHIEQADT FT PPTLEALAAHVGLSPFHLHRLFKAETGLTPKAYASAQRARRLRAELGESASVTAAIYDA FT GFNSNSRFYEASQQLLGMAPRAYRAGGANARIRFAVAQCALGAILVAQSQLGICAILLD FT DDPDYLVRQLQDLFPRATLIGGDAGFERLVAEVVGFVEAPALGLNLPLDVRGTAFQERV FT WQALREVPPGATASYTDIAERIGAPKAVRAVAQACAANRIAVAIPCHRVVRRDGDLSGY FT RWGVDRKRELLRREAATP" FT misc_feature complement(1326035..1326283) FT /note="HMMPfam hit to PF01035, DE 6-O-methylguanine DNA FT methyltransferase, DNA binding domain, score 3.7e-38" FT misc_feature complement(1326110..1326130) FT /note="PS00374 Methylated-DNA--protein-cysteine FT methyltransferase active site." FT misc_feature complement(1326539..1326676) FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.31" FT misc_feature complement(1326686..1326820) FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 1.1e-09" FT misc_feature complement(1326722..1326787) FT /note="Predicted helix-turn-helix motif with score FT 1618.000, SD 4.70 at aa 106-127, sequence FT PTLEALAAHVGLSPFHLHRLFK" FT misc_feature complement(1326863..1327063) FT /note="HMMPfam hit to PF02805, DE Metal binding domain of FT Ada, score 7.1e-21" FT CDS complement(1327161..1327820) FT /transl_table=11 FT /locus_tag="BB1235" FT /product="DNA-3-methyladenine glycosylase 1" FT /EC_number="3.2.2.21" FT /protein_id="CAE31733.1" FT /translation="MTAATLSPAAYAHAERFLAGLDADWRRHVAATGACLHRPLPAREP FT YEALVRAIAYQQLHARAGDAIVGRLLALFPGGAFPAPGQLLAADPAALRACGFSAAKTQ FT TILGIAQAARDGVVPDRRAARRMSDQALVERLTTLRGVGRWTVEMLLIYTLARADILPA FT DDFGVRDGYRRLKGGAATPTARQMRDIGQAWGPYRTLAAWYLWRVPPEARIRAQET" FT misc_feature complement(1327185..1327685) FT /note="HMMPfam hit to PF00730, DE HhH-GPD superfamily base FT excision DNA repair protein, score 0.0091" FT CDS complement(1327922..1328425) FT /transl_table=11 FT /locus_tag="BB1236" FT /product="putative glyxalase" FT /protein_id="CAE31734.1" FT /translation="MATAVKPIPEGMHTLTPHIICAGAARAIDFYIKAFGAVEMARLAG FT PDGRLMHGAVRIGDSTLMLMDAFPEWDTPDPKALNGTPVVLHLYVEDVDAAHAQAVAAG FT ATSVMPVTDMFWGDRYGQVRDPFGHLWSIATHKQDLTPEQIAEAARNAPPCPDVAEQAG FT KARE" FT misc_feature complement(1328000..1328368) FT /note="HMMPfam hit to PF00903, DE Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily, score 0.00036" FT CDS complement(1328593..1329750) FT /transl_table=11 FT /locus_tag="BB1237" FT /product="putative phosphoesterase" FT /protein_id="CAE31735.1" FT /translation="MSLRRSAFFIRFLTLGALAHVYVGARLIPDAGLPATGVAAAILAL FT CASCVLIPLGMASHASGRQPWGDRLAAVGLVAMGYFSSLFVLTVLRDAALLLAWLAALA FT ALPVPMDALRAASAPAVPLLALAATLLGLANARRRARVVTVDVPIDALPAALQGYTIVQ FT ISDLHVGPTIKRRYLQAVVDAVNAAGPDLVAVTGDVVDGPVAHLSPHTQPLAALRAPDG FT VYLVTGNHEYYSGAAAWVQEFRRLGLCVLQNEHRVVRRGDAALVVAGVTDYGAAAFDAS FT QRSNPAQALASAPAKAAVRLLLAHQPRSAAAAAPLGYTLQLSGHTHGGQFLPWNWFVRL FT QQPFTAGLHRYGPMWVYTSRGTGYWGPPKRLGAPSEITRVRLVRA" FT misc_feature complement(1328602..1328631) FT /note="PS00215 Mitochondrial energy transfer proteins FT signature." FT misc_feature complement(1328764..1329276) FT /note="HMMPfam hit to PF00149, DE Calcineurin-like FT phosphoesterase, score 3e-16" FT misc_feature complement(join(1329349..1329417,1329475..1329543, FT 1329580..1329648,1329676..1329732)) FT /note="4 probable transmembrane helices predicted for FT BB1237 by TMHMM2.0 at aa 7-25, 35-57, 70-92 and 112-134" FT misc_feature complement(1329637..1329654) FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT misc_feature complement(1329694..1329750) FT /note="Signal peptide predicted for BB1237 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.921) with cleavage site FT probability 0.471 between residues 19 and 20" FT CDS 1329990..1331378 FT /transl_table=11 FT /gene="cioA" FT /gene_synonym="qxtA" FT /locus_tag="BB1238" FT /product="cytochrome oxidase subunit I" FT /protein_id="CAE31736.1" FT /translation="MMSSEALLLARIQFGFTISFHIIFPAITIGLASYLAVLEGCWLRT FT RDTVYRDLYHFWSKVFAVNFGMGVVSGLVMAYQFGTNWSAFSEFAGSITGPLLAYEVLT FT AFFLEAGFLGVMLFGWSRVGPRLHFFSTIMVALGTLVSATWILASNSWMQTPAGYEIVD FT GRVVPVDWLAVIFNPSFPYRLAHMGIAAFLATALLVAASGAWHLLRGHRTPAVRRMFAM FT ALGMLAIAAPLQAVVGDMHGINTLKHQPAKIAAIEGHWENVPGEGVPLHLFGVPDMQAE FT TTRYALSVPRLGSLILTHSLDGQFPGLKSYPPADRPNATVVFWSFRVMVGLGMLAIALA FT AWAGWARLRGRLYESRALQRFALAMGPSGLVAILAGWYTTEIGRQPWIVQGLMRTADAA FT TPHGVPALTLTLLLFVFVYLIVFGAGIAYVLRLIARGPSGSAPAGGEPGLVQRPLAAAQ FT QGGL" FT misc_feature 1330014..1331327 FT /note="HMMPfam hit to PF01654, DE Bacterial Cytochrome FT Ubiquinol Oxidase, score 6.7e-215" FT misc_feature join(1330032..1330100,1330155..1330223,1330281..1330349, FT 1330368..1330436,1330545..1330613,1330632..1330700, FT 1330956..1331024,1331058..1331126,1331211..1331279) FT /note="9 probable transmembrane helices predicted for FT BB1238 by TMHMM2.0 at aa 15-37, 56-78, 98-120, 127-149, FT 186-208, 215-237, 323-345, 357-379 and 408-430" FT CDS 1331380..1332387 FT /transl_table=11 FT /gene="cioB" FT /gene_synonym="qxtB" FT /locus_tag="BB1239" FT /product="cytochrome oxidase subunit II" FT /protein_id="CAE31737.1" FT /translation="MGVDLSLIWAIIILFGVMMYVVMDGFDLGIGVLFPLLPGKSDRDV FT MMNTVAPVWDGNETWLVLGGAGLLAAFPRAYAVVLGALYLPLVFMLLGLVFRGVAFEFR FT FKADEHHRPFWDRAFIGGSVAAAFFQGATLGAYLQGIELVDGAYQGGPWGWVTPFSLFC FT GAGLVVAYALLGCTWLIMKTEGALQQRMIVAARPLTGALLAVIAVISVWTPLIEPAIAR FT RWFSLPNFYAFAPVPVLVLAAAWGLLRALRGQPDMAPFLLTLALVFLGYSGLCISLWPH FT AIPPGVTLWEAAAPPQSQGFALVGALFIVPIILTYTAWSYYVFRGKVRAGDGYH" FT misc_feature 1331386..1332366 FT /note="HMMPfam hit to PF02322, DE Cytochrome oxidase FT subunit II, score 2.8e-144" FT misc_feature join(1331392..1331445,1331608..1331676,1331734..1331802, FT 1331830..1331898,1331959..1332027,1332070..1332123, FT 1332157..1332225,1332283..1332351) FT /note="8 probable transmembrane helices predicted for FT BB1239 by TMHMM2.0 at aa 5-22, 77-99, 119-141, 151-173, FT 194-216, 231-248, 260-282 and 302-324" FT misc_feature 1331830..1331892 FT /note="PS00079 Multicopper oxidases signature 1." FT misc_feature 1331875..1331907 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1332398..1332544 FT /transl_table=11 FT /locus_tag="BB1240" FT /product="conserved hypothetical protein" FT /protein_id="CAE31738.1" FT /translation="MMEDALDRPASTLRRLGWLALLWAGGVAGLGLAAGGLKLIMKLAG FT LTP" FT misc_feature 1332440..1332508 FT /note="1 probable transmembrane helix predicted for BB1240 FT by TMHMM2.0 at aa 15-37" FT CDS 1332561..1333982 FT /transl_table=11 FT /locus_tag="BB1241" FT /product="putative aminotransferase" FT /protein_id="CAE31739.1" FT /translation="MKLKRYEVLADEITASIQAGTRRAGDRLPSVRQTSASRGLSATTV FT FKAYYLLEARGLIRARDRSGYYVVGKPKALPPELEAGAPAESRRVDVDVSDRVLHVLQL FT TMRRDVVPFGSAFPHPSLFPHARLARAMASSVAALDPWSSVDDLSAGNTRLRRAIALRY FT LADGVQVRTEDIVITNGALEALNLCLGAVTRPGDSVLIESPTFYSALQSLERLGLRAIE FT VPAHPREGIELDALARAIDTHRPAACWLMTNFQNPLGSLMPEGKKRALVELLAARDVPL FT IEDDVYSELYFGAQRPLPAKAYDESGIVMSCSSFSKSLAPGWRIGWVLGGRYADRILRG FT KLSLSLSTSAPSQAALATYLEHGGYDRHLRQLRQTLEQQRNQVMEAIARHFPPGTRTTH FT PDGGYFLWVALPPQVDALAVHRAALSLGVSTAPGPIFSVQDRFRHCLRLNYGHPFDARA FT QDGLATLGKLIARQC" FT misc_feature 1332585..1332764 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.4e-10" FT misc_feature 1333044..1333967 FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 3.4e-10" FT CDS 1334134..1334466 FT /transl_table=11 FT /locus_tag="BB1242" FT /product="hypothetical protein" FT /protein_id="CAE31740.1" FT /translation="MYRGHEAIKQFMQAIGLPWTPGQAESAELRASYRIGSGRPLNIDR FT TRVEFHCDDARAKVWVPEFARTSFHQWFEVAYQDFEYAPGASMLKIKAAARGNAAAYSV FT GLKPLA" FT CDS complement(1334477..1337638) FT /transl_table=11 FT /gene="ttrA" FT /locus_tag="BB1243" FT /product="tetrathionate reductase subunit A" FT /protein_id="CAE31741.1" FT /translation="MPKQHPTPDPNAPADARRRKLIARGGAVAGGMAAFAAGYGETVAR FT AVKGLAQGSAGAPTADALRGNSLTPEFRIDPVTGALSAQPGQTVSPSSCLGCWTQCGVR FT LRVDTETNRILRVAGNPYHPLATTQPAPMHAPVREVYARLGGDNGLEGRATSCARGSAM FT LEQLTSPYRVLQPLKRVGPRGAGQWRTISFEQLVEEVCEGGDLFGEGHVDGLRAIYDPV FT TPLDPDNPEYGPRSNQLLFTDSANEGRTPLIQRFAAQSFGTVNVSNHGSYCGQSFRVGT FT GAAFGDLKGMPHGKPDWTRARFGLFIGTAPAQSGNPFQRQGRQLAEARVRDDGAGFHYV FT VVSPVLPASASLAAGSGNEWLAVDPAGDLALVMGMIRWILEHDRYDAAMLSQPGPAAMD FT AAGEAAWTNATHLVIDAPGHARHGSCLRGADLGWPRAGADPQAEDVYVVQRPDGTLAPH FT THAGPAALFVERDLPAEGVAPGLGGVRASSALALLRREARRMTLDEYARHSGVPAARIA FT GLAERFTSHGKQAVADAHGGTMSGAGFYTAYAIAMLNTLVGNLNVAGGLVLDGGPFAPY FT GKGPRYDIAGFAGRVAPRGVSLSRNRFPYEKSSEYRRKAEAGQSPYPARSPWYPATGAL FT SSEMLASALAGYPYRAKVWLNHMSNPVYAIAGLKNVIADKLRDPGLLPLSVSINAFINE FT TNALADYIVPDTITYESWGVSAPWADVQAKASTVRWPAVAPRVARTADGEPVCLESFLI FT ACAKRLGMPGFGADAIAGRDGRRHALDTASDFFLRGMANMAYAGGAPVAEASEDDLALT FT GVDRHADLLRRTLHEDEWRRVALLMSRGGRFDAAEDVWRDGRVHPPYRKPLHVWSEDLA FT RMRHAMTGEPYSGCPTWYPTRLADGRAMREQYPQADWPFLLSSFKSNLMSSMSIGVSRL FT RQVHPHNPVSISRADASRLGIGNGDAVRIVTPGGAVTGLALVRDGVQPGAIAIEHGYGH FT TELGARAHVVDGQPMPHDPALAAGVNLNDLGFGDATRALRDNVWIDWVSGAAVRQGLPA FT RLEKA" FT misc_feature complement(1334624..1334911) FT /note="HMMPfam hit to PF01568, DE Molydopterin dinucleotide FT binding domain, score 1.1e-07" FT misc_feature complement(1335167..1337380) FT /note="HMMPfam hit to PF00384, DE Molybdopterin FT oxidoreductase, score 2.8e-06" FT misc_feature complement(1337510..1337578) FT /note="1 probable transmembrane helix predicted for BB1243 FT by TMHMM2.0 at aa 21-43" FT CDS complement(1337665..1338699) FT /transl_table=11 FT /gene="ttrC" FT /locus_tag="BB1244" FT /product="tetrathionate reductase subunit C" FT /protein_id="CAE31742.1" FT /translation="MRISELITPVYDAAWLPWAVQYFFLIGISAATALTASACAFGRPG FT SARARLLPAAIAVLAVSAVAAPVSLLADLHQPGRFWHFYTQATPWSWMWLGALLLPLYA FT ALALGLCAAWWLGWRRAMRALAVPLALSALSILVYTGSEVMVLRSRPLWHTVFLPINFA FT LTGWLGALGAMLLLGRWLPGGLAAVPMALLRRLAMAALAALAASAGAWAVLGLLGHEPS FT FDAALRLFAQFPAWRASLAGAIATGLCMAALLQMRPARLAGPAASLALALTLLAAAWTF FT RWVVFMNVQGVPKYGAGLYLYDMPWGSDGLLGMAGVLGLCVALVAALAWALERFPARTA FT APAR" FT misc_feature complement(join(1337704..1337772,1337851..1337919, FT 1337938..1338003,1338061..1338129,1338166..1338234, FT 1338262..1338330,1338349..1338417,1338487..1338555, FT 1338574..1338642)) FT /note="9 probable transmembrane helices predicted for FT BB1244 by TMHMM2.0 at aa 20-42, 49-71, 95-117, 124-146, FT 156-178, 191-213, 233-254, 261-283 and 310-332" FT misc_feature complement(1337821..1338696) FT /note="HMMPfam hit to PF03916, DE Polysulphide reductase, FT NrfD, score 2.8e-06" FT CDS complement(1338713..1339486) FT /transl_table=11 FT /gene="ttrB" FT /locus_tag="BB1245" FT /product="tetrathionate reductase subunit B" FT /protein_id="CAE31743.1" FT /translation="MHNAPSSDRPPAPGKRGFLKELLGLAATATVIPIAPEARAGMNAQ FT PPRRPGAAGKRYGMVVDLRKCIGCQACTVSCSMENLPPIGQFRTTVLQYEVLPDDGGPC FT SMVMLPRLCNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDARFIN FT HETQTADKCTFCEHRLEAGLLPACVESCVGGARVIGDLNDPASAVSRLLAEHRDEVKVL FT KPDMRTDPHVYYIGLPDAFVNQIDGQAGVRLAGRH" FT misc_feature complement(1339004..1339075) FT /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain, FT score 6.4e-08" FT misc_feature complement(1339019..1339054) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature complement(1339241..1339312) FT /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain, FT score 0.032" FT CDS 1339802..1340155 FT /transl_table=11 FT /locus_tag="BB1246" FT /product="putative exported protein" FT /protein_id="CAE31744.1" FT /translation="MKKTIIASAACAALLATSGAVLAQSGASLTPDQLQHLDTDKSGGV FT SQKEYQAFMEASFAKLDANGDGSLTRQELPQEVSDAQFTAMDANKDGRVSRQEFLGQVM FT RDFATASRGGELK" FT misc_feature 1339802..1339870 FT /note="Signal peptide predicted for BB1246 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 23 and 24" FT misc_feature 1339814..1339882 FT /note="1 probable transmembrane helix predicted for BB1246 FT by TMHMM2.0 at aa 5-27" FT misc_feature 1339886..1339972 FT /note="HMMPfam hit to PF00036, DE EF hand, score 2.9" FT misc_feature 1339985..1340023 FT /note="PS00018 EF-hand calcium-binding domain." FT misc_feature 1340033..1340119 FT /note="HMMPfam hit to PF00036, DE EF hand, score 0.88" FT misc_feature 1340060..1340098 FT /note="PS00018 EF-hand calcium-binding domain." FT CDS complement(1340178..1341104) FT /transl_table=11 FT /locus_tag="BB1247" FT /product="putative hydrolase" FT /protein_id="CAE31745.1" FT /translation="MTQSSQTTSPSADARVKHRYLDLDELRIFYREAGPADAPVVLLPH FT GYPCSSFQYRDFMPALADQWRLLAPDFPGFGYSDTPDTARFACDFEHYTDFLQQFAHAL FT GLPSYALYLHDYGSQIGLRLAMREPDKVSGLIIQNGDIYEDELGPRYAPLQAYWADPTL FT EGRYKLSLAVSEEGFRDEFLNDLPDERADCITPDMWKLAWALLREPRRREIMVGLMEGL FT EDNLAWFPRYQAYLRERQPPTLIVWGVHDGYMPEAAARAYLRDLPDAELHLLPAGHWAL FT ETHLAPIVALTRAFLQRVHATPNFPPP" FT misc_feature complement(1340217..1340912) FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 3.1e-21" FT CDS complement(1341430..1343781) FT /transl_table=11 FT /gene="lon" FT /gene_synonym="lonD" FT /gene_synonym="bsgA" FT /locus_tag="BB1248" FT /product="ATP-dependent protease La" FT /EC_number="3.4.21.53" FT /protein_id="CAE31746.1" FT /translation="MTDPRTLPEDARIIIPLRDAVLFPGVLSPVTVHRQSSVAAAQEAV FT KNERPLGFLLQRDPQKNDVGPDDLYWVGTEGPVARYITGQEGAHHLLVQGQARFRVLEF FT LEGWPFLVARVALVDTPAASDSQTEARFLQLKQQTIDAIALLPNVPDELADVVRGIESP FT ALLADMVTNLIDIKAGQKQDILETFDLARRLDKVIELLAARLEVLRLSKEIGERTRAQF FT DERQRETVLREQLRQIQKELGETDDGAAEAAQLKETIEQAGMPEEVLNHARKELSRLQR FT MGDGSGEYAMLRTYLEWLTELPWKHEPQQAIDLAEARRVLDEDHFGLDKIKRRILEYLA FT VRKLNPEGRSPILCFVGPPGVGKTSLGQSIARATGRAFQRVALGGVHDEAEIRGHRRTY FT LGALPGNIIQAVRRAGTGNLVLMLDEIDKLGAGGFHGDPGSALLEVLDPEQNHKFRDNY FT LAVDYDLSHVMFICTANVLDTVPGPLRDRMEIIDLPGYTEEEKIQIARRYLIKRQLEAN FT GLRPEQADITDAALAAIVGDYTREAGVRNLEREIGSVLRHAAMQVAEGKAGHVSIDAAD FT LGATLGPRRFENEVALRTSLPGVATGLAWTPVGGDILFIEASKVPGSGRLILTGQLGDV FT MKESAQAALTLAKTWSGDALEKVDIHIHVPAGATPKDGPSAGVAMFVALASLLSGRPVD FT ANVAMTGEVSLRGLVLPIGGIKEKTLAALRAGITTVMLPRRNEKDLDDVPAEARRKLRF FT VLLDRVEDALRCALGDEPQAEDEPAARATG" FT misc_feature complement(1341742..1341768) FT /note="PS01046 ATP-dependent serine proteases, lon family, FT serine active site." FT misc_feature complement(1342138..1342728) FT /note="HMMPfam hit to PF00004, DE ATPase family associated FT with various cellular activities (AAA), score 1.5e-45" FT misc_feature complement(1342690..1342713) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1343173..1343742) FT /note="HMMPfam hit to PF02190, DE ATP-dependent protease La FT (LON) domain, score 4.1e-09" FT CDS complement(1343778..1344185) FT /transl_table=11 FT /locus_tag="BB1249" FT /product="heat shock protein" FT /protein_id="CAE31747.1" FT /translation="MRSRDFSSWIWGDALSLLQQADRLHRQLLRTGPAQAPCWEPPVDM FT IETESAVLIYVALPGVAAGDVAVRFDPDGISISGVRPLPALRNARIHGLEIPYGRFQRR FT IRLPLHALEPEAPTLADGCLTLTLKKLREAP" FT CDS complement(1344501..1345268) FT /transl_table=11 FT /locus_tag="BB1250" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0278 SWALL:Q9I6L2 (EMBL:AE004466) (250 aa) fasta FT scores: E(): 2.7e-37, 57.14% id in 238 aa, and to Rhizobium FT loti hypothetical protein Mll2193 SWALL:Q98IY4 FT (EMBL:AP002999) (249 aa) fasta scores: E(): 2.5e-35, 54.25% FT id in 247 aa" FT /protein_id="CAE31748.1" FT /translation="MSGIDAAGLGAPAALALAGAVFLLAGAVKGVVGLGLPTISMALLA FT LLMPPAQAAALLIVPSLVTNLWQAGPLASLRRVWRRIAGMQAGVCVGTLGGAWWFGAPA FT GAWAAGALGAALLAYAGWGLLGRPPRVPARAQPWLGPLVGALTGLVTAATGVFVVPAVP FT YLQALGLDKDELVQAMGISFSVSTLALAAGLGLTGHYGGGAAAVSLAMLAPALAGMVCG FT QRLRHALSPQRFRLCLYASLALLGAYQIVQARW" FT misc_feature complement(join(1344516..1344569,1344603..1344671, FT 1344786..1344854,1344891..1344959,1344969..1345037, FT 1345074..1345142,1345185..1345250)) FT /note="7 probable transmembrane helices predicted for FT BB1250 by TMHMM2.0 at aa 7-28, 43-65, 78-100, 104-126, FT 139-161, 200-222 and 234-251" FT misc_feature complement(1345110..1345268) FT /note="Signal peptide predicted for BB1250 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.989) with cleavage site FT probability 0.643 between residues 53 and 54" FT CDS complement(1345265..1345615) FT /transl_table=11 FT /locus_tag="BB1251" FT /product="putative exported protein" FT /protein_id="CAE31749.1" FT /translation="MHPLSRIAAALLTTLPVFAAQADSPAQQYGLALEAQTAGDYPRML FT SLLQSAAGAGHAPAQQTLGLALLGGPALYGQAIASDPCAARHWLARAARAQGDAPPAVF FT ARPRAQLPACQP" FT misc_feature 1345559..1345615 FT /note="Signal peptide predicted for BB1251 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.756 between residues 22 and 23" FT CDS 1345731..1346636 FT /transl_table=11 FT /locus_tag="BB1252" FT /product="LysR-family transcriptional regulator" FT /protein_id="CAE31750.1" FT /translation="MLRWAMRFDLTDLRLFLNVCEAGTITAGARRSHMTLASASERVRG FT MEGALGVALLLRERYGVQPTAAGRTLLHHARAVLLQMDRLRGELGQYGQGLKGHVRLLC FT NTAALSEHLPAVLAGFLAAHPQVSVDLEERLSREIADALRAGTCDIGVLADSADLHGLQ FT ARTFRHDPLVVAVPRGHALAGRAAVSLADVAALDFVGLVEGSALQAHIGQHARRAGQVL FT NYRVRLRSFDAICDMVGHGIGVAIVPRTAALRAARAGRIRRLRLSDDWAERDLMLCVRD FT PDALPPYARQFVAHALAEAP" FT misc_feature 1345758..1345937 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.9e-10" FT misc_feature 1345800..1345892 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1346007..1346630 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 8.4e-46" FT CDS complement(1346633..1347124) FT /transl_table=11 FT /locus_tag="BB1253" FT /product="conserved hypothetical protein" FT /protein_id="CAE31751.1" FT /translation="MTDPAATLIRRLGLLPHPEGGHYRETYRADDAVTRADGARRAAST FT AILYLLCDGAWSTWHRIRADELWHFHAGAPLHIHVLAPDGGYRRLRLGNTLEDAGAEFQ FT AVVPAGSWFAAELARPGGYALAGCTVAPGFEFSEFELADAAVLRRLYPAQADLIARLAR FT " FT CDS 1347223..1348176 FT /transl_table=11 FT /gene="add" FT /locus_tag="BB1254" FT /product="adenosine deaminase" FT /EC_number="3.5.4.4" FT /protein_id="CAE31752.1" FT /translation="MYDWLNALPKAELHLHLEGTLEPGLMFELARRNGVALPWPDVESL FT RRAYDYDNLQEFLDLYYRGAEVLRTEQDFYDLTWAYLLKCREQNVVHTEPFFDPQTHTD FT RGIAFETVLAGITQALEDGRTQLGIQGGLILSFLRHLPEEAAMRTLEQALPYRDAFIAV FT GLDSSERGFPPRLFQRVFERARAAGLPAVAHAGEEGPPEYIWEALDLLQVRRIDHGVRA FT AEDERLIERLIDTQIPLTVCPLSNTRLRVFDSMAEHNILELLERGVKVTVNSDDPAYFG FT GYITENFHALHEHLGMTQDQARRLAANSMDARLAGG" FT misc_feature 1347223..1348170 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00962, DE Adenosine/AMP deaminase, FT score 1.7e-68" FT CDS complement(1348193..1349155) FT /transl_table=11 FT /locus_tag="BB1255" FT /product="putative exported protein" FT /protein_id="CAE31753.1" FT /translation="MSLKHTLGALALALGLLPAGPAAADYPERPVRMVIPFAAGGPADI FT VGREFAQLFGQALGQPVVVVNAGGGHGVPALNQVLGAPADGYTLLMPASGNMTIPSKAM FT QGKDVLALLAPISQLTQSPHVLVVTAGLPVDSVQGLIDYAKAHPGKVNFGSAGMGGVAH FT LGMELFKSQAKVDVVHVPYRGTSQVITDLASGQVQALFSSMPSLKPMIDKGAVKALAMS FT APSSGADTSKLPVVSATLPGMAYTTWYGLFAKAGTPPEVLEKLNQAVVETLKDPELNRK FT FESEGVEFVASTPQQLEALVRQDTKKWTALIEQAGIQVE" FT misc_feature complement(1348205..1349020) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.2e-68" FT misc_feature complement(1349084..1349155) FT /note="Signal peptide predicted for BB1255 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.922 between residues 24 and 25" FT CDS complement(1349186..1349815) FT /transl_table=11 FT /locus_tag="BB1256" FT /product="putative dimethylmenaquinone methyltransferase" FT /protein_id="CAE31754.1" FT /translation="MSVSPARDLSTTLLADAGARVMSAGIKPLRAGWHVHGRALTVSVD FT AGDNLAIHAALAQARPGEVLVIDAQGYLDRAVMGGIMCAQAAAVGLAGVIIDGAMRDLA FT ELRAGTLPAYALGGSPAGPTKRGGGTVRRAIRCGGVDVRPGDWIMADDDGVVVYRDDEA FT EAVLAATLAKQQAEAARMAAIARGELRPAWLDDALARAPIDTGKSA" FT misc_feature complement(1349192..1349215) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1349345..1349797) FT /note="HMMPfam hit to PF03737, DE Dimethylmenaquinone FT methyltransferase, score 7.9e-29" FT CDS complement(1349821..1350540) FT /transl_table=11 FT /locus_tag="BB1257" FT /product="conserved hypothetical protein" FT /protein_id="CAE31755.1" FT /translation="MASAILVVTAHVGDFVWRCGGAMALHAQRGVDVRLVCLSYGENGE FT SNAAWQANPDGARDEVKQVRRAEAEAAAAILGAAGVDFYDLGDYPMPESPDAVRRLSQT FT LRAVRPAAVITHPEHDPSNLDHCRAYDMVLRARMQAMAPGHGADYIVPPQVLCFEPHQS FT ELCGFKPNLLLDISAVWEQKQRAMQAMATQRNLWAYYERVALQRGAQAGRRAKTTATAY FT AEAYQSIFPAVVPAFVE" FT misc_feature complement(1349848..1350540) FT /note="HMMPfam hit to PF02585, DE Uncharacterized LmbE-like FT protein, COG2120, score 5.7e-06" FT CDS 1350640..1351347 FT /transl_table=11 FT /locus_tag="BB1258" FT /product="putative transcriptional regulator" FT /protein_id="CAE31756.1" FT /translation="MSNDGVVAVERALAVLDCFRPGDERLGLAEFAARLPLHKTTIFRL FT LNSLARCGYVLREPDGRYSLGPRVLYLARVYERGFNLSGVVMPVLESLSGQTGESAAYY FT VEGDQPGQRLCLFRHQPYVGLHSQVLAGSVMPPDRSSTGRVFAVWAQGQPGGDERLPFF FT SCGARDPYTSSWSVPVVGDDDRFVGALTVAGPSERLRTVDVPRFERLVLEHADDLARRL FT GASATIRAALYGD" FT misc_feature 1350715..1350780 FT /note="Predicted helix-turn-helix motif with score FT 1347.000, SD 3.77 at aa 26-47, sequence FT LGLAEFAARLPLHKTTIFRLLN" FT CDS complement(1351361..1352479) FT /transl_table=11 FT /locus_tag="BB1259" FT /product="putative 2-nitropropane dioxygenase" FT /EC_number="1.13.11.32" FT /protein_id="CAE31757.1" FT /translation="MIHADPESAMPAAYAATPFAQRLGLTLPVVQAPMAGVSTPALAAA FT VSNAGGLGSLGLGAMNADAARQAIALTREQTTRPFNVNLFCHAPATADAAREARWLQYL FT APRFAEFDAQPPATLREVYTSFLADDDMFDMLLAERPEVVSLHFGLPPASRIAALRQAG FT IYLMATATDMREAARIAAAGVDAIVAQGIEAGGHRGMFDPAARDEQLGTLALTRLLARR FT FDAPVIAAGGIMDGAGVAAVLALGAQAAQLGTAFISCPESSADMPHRHALLDQAEVATT FT LTRAISGRPARSIANRYTELGAAADCPPTPDYPIAYDAGKALHAAARARGDASYAAQWA FT GQAAALSRGVPAATLMRQLQAELNDCIGRLAR" FT misc_feature complement(1351394..1352434) FT /note="HMMPfam hit to PF03060, DE 2-nitropropane FT dioxygenase, score 5.5e-75" FT misc_feature complement(1351739..1351801) FT /note="PS00912 Dihydroorotate dehydrogenase signature 2." FT CDS complement(1352476..1353351) FT /transl_table=11 FT /locus_tag="BB1260" FT /product="probable LysR-family transcriptional regulator" FT /protein_id="CAE31758.1" FT /translation="MELAELEIFRAVARTESVTRAAHALARVQSNVTTRLRQLEDSLGV FT TLFLRENKRMTLTPDGRRLLAYAERLLALAEETRQAMRADTPAGRLRLGAMESAAASRL FT PQPLASLHAQWPDLAIDLHTGTTQWLAGQVAACRLDCAVIAHPAASPADTAMAPLHPSL FT RGAYLYSEELLLALPPGHPPVRTPQDIQVRTLAAFAQGCTYRLCAEQWLDMAGVRVIEM FT ASYHAMMAGVLAGSAMAILPRSVLALHPGAALARTVPVRTVPCFLIHRDGYDSAARLAL FT LRALQAPPAP" FT misc_feature complement(1352482..1353102) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 7.3e-25" FT misc_feature complement(1353166..1353345) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 6.2e-20" FT misc_feature complement(1353211..1353303) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS complement(1353415..1354359) FT /transl_table=11 FT /locus_tag="BB1261" FT /product="putative membrane protein" FT /protein_id="CAE31759.1" FT /translation="MLPAMSRSSSPPLAPARRTRGGHACLALAMVLAGSTVPASKLIAA FT EVAPFTATAIRLGLALPVFLLLMRATGARWPRPGRRDACLLALQAAAGSVGYTALLIAG FT LRLTSAADAAVVIGTLPAVTALLAMAVLRERPPPRTLAAIALAAAGVLVLVGGRTDGAP FT GSLAGNLLVLGAVVCEGLFILLSKRLRAPIAPLPLSAALTAIGAVLAGAAALAEAPWHA FT AFGGPALAVLAYYAWLPTVAGFVLWYAGLARASASEAALFTALAPVAAVLLAALALGET FT VGPRQAAGIGCVLAAVLALRPGGDKQSQKENIK" FT misc_feature complement(join(1353448..1353516,1353526..1353585, FT 1353604..1353672,1353715..1353783,1353802..1353870, FT 1353883..1353939,1353964..1354032,1354045..1354113, FT 1354150..1354218,1354231..1354299)) FT /note="10 probable transmembrane helices predicted for FT BB1261 by TMHMM2.0 at aa 21-43, 48-70, 83-105, 110-132, FT 141-159, 164-186, 193-215, 230-252, 259-278 and 282-304" FT misc_feature complement(1353454..1353831) FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 2.7e-16" FT misc_feature complement(1353892..1354269) FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 2.1e-17" FT misc_feature complement(1354228..1354359) FT /note="Signal peptide predicted for BB1261 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.883) with cleavage site FT probability 0.687 between residues 44 and 45" FT CDS complement(1354409..1355212) FT /transl_table=11 FT /locus_tag="BB1262" FT /product="probable AraC-family transcriptional regulator" FT /protein_id="CAE31760.1" FT /translation="MPQGRFIALRSAEPGVSAVAAQSRHAFARHTHDQYGVGLMTRGAQ FT RSASGRGPVQARAGELITVNPGEVHDGAPLGEGERAWCMLYFEPALIAQAAAGLDGDAG FT SYEFHLPVLGHAALAAAFARLYACVTTPGAAPLARDAALLQLLAGLRRPDPGRAPARLP FT HPGIARARQRIDDDPAAALTLADLAQACGLSRYQVLRGFAHATGLPPHAYQTQRRLQLA FT RRLILQGVPLAETAAACGFADQSHLSRLFARSYGMTPGRYARAAR" FT misc_feature complement(1354421..1354549) FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 2.7e-09" FT misc_feature complement(1354436..1354561) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT misc_feature complement(1354568..1354705) FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.00016" FT misc_feature complement(1354604..1354669) FT /note="Predicted helix-turn-helix motif with score FT 1759.000, SD 5.18 at aa 182-203, sequence FT LTLADLAQACGLSRYQVLRGFA" FT CDS complement(1355261..1357063) FT /transl_table=11 FT /locus_tag="BB1263" FT /product="putative lipoprotein" FT /protein_id="CAE31761.1" FT /translation="MIRSRLLPAAALALLTGCASQLPPADSTAMADAIWFGGPIVTIDA FT HTPSARAVAVRDGRIMAVGREHAVLRYRGPDTRMHDLRGATLLPGFVDAHSHVSTVGMQ FT ALSANLLPPPDGPNASIADLQNTLRQFRRNSDLPRQFGMLLGFGYDDSQLQERRHPNRD FT DLDAVARDLPVVAIHQSGHVGVLNSAALAAAGIGAASRAPDGGVIGRRKGSREPDGVLE FT ENAFFAALARLFPRLTPEQAVAMLDAGQQLYIRNGYTTIQDGRAAPDQVRIAELAARQG FT KLVADVVAYPDILAPGTPALMQAPWFRPAGEPVRYQRRFRIGGVKLTLDGSPQAKTAWL FT SEPYFVPPPGQNRKYAGYGVVSDARAAQLYGLALANRWQILTHANGDRAIDQMIAALRQ FT AEQAHPGVDVRPVLIHGQTLRQDQIPALKSLGVLASLFPMHTYYWGDWHRDSVLGPRRA FT ENISPMRWVTDAGMPVTSHHDAPVAFPDSMRVLSATVNRITRSGHVLGPHQRLDPLTAL FT KSMTLWAAYQHFEEDDKGSITRGKLADFVVLSGNPLEVPPATLAGLKVLQTVKEGRVIF FT DRASAVGTPAPSPLGRRSAPRPPA" FT misc_feature complement(1356971..1357063) FT /note="Signal peptide predicted for BB1263 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.470 between residues 31 and 32" FT misc_feature complement(1357010..1357042) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1357312..1357536 FT /transl_table=11 FT /locus_tag="BB1264" FT /product="conserved hypothetical protein" FT /protein_id="CAE31762.1" FT /translation="MFPEYRHVITRLKAEDPHFTALFQRHNELDQEIQNMEAGIVPASS FT GNIENLKKEKLRLKDKLYDILRAADRDSS" FT CDS 1357662..1358693 FT /transl_table=11 FT /locus_tag="BB1265" FT /product="conserved hypothetical protein" FT /protein_id="CAE31763.1" FT /translation="MPVQTAGQAERQTVQAAIEAAAVDQAASLLEVLRNTSKVEPARVR FT DTVKTLLDGLSPDETAQLRELLLTGGQAPWRARDPNHPDDELATDWREGGYPYRNRMSR FT RAYEKQKYRLQVELLKLQAWVRETRQRVVILFEGRDAAGKGGTIKRFMEHLNPRGARVV FT ALEKPSDSERGQWYFQRYVQHLPTAGEIVLFDRSWYNRAGVERVMGFCSQDEYEAFMHQ FT VPEFERHLIRSGTHLIKFWFSVSQQEQHRRFKERQVHPLKQWKLSPVDMASLDKWDAYT FT QAKEDMFAHTDTADSPWIVVRSDCKKRARLNAMRYVLHKMSYANRDFESIGPVDALLVG FT RAI" FT misc_feature 1357962..1358648 FT /note="HMMPfam hit to PF03976, DE Domain of unknown FT function (DUF344), score 6.5e-155" FT CDS complement(1358707..1358925) FT /transl_table=11 FT /locus_tag="BB1266" FT /product="conserved hypothetical protein" FT /protein_id="CAE31764.1" FT /translation="MEHTHDPAQRLTELEIKAGFAEDLLEQLNQIVVRQQRQIDALARE FT VAELRQQVPAGGAGAPRSLRDDLPPHY" FT CDS 1359003..1359485 FT /transl_table=11 FT /locus_tag="BB1267" FT /product="conserved hypothetical protein" FT /protein_id="CAE31765.1" FT /translation="MNIWVDADACPAEVKDILWRAAQRWQVPVTLVANQLLRVPASPWM FT RAVQVPRGFDVADAHIVASAVPGDLVITADIPLAAEVVGKGVAAMSWRGEVFDAGSIGE FT RLTMRDMMEELRAGGVDIGGPAAFGQADRRAFANALDAAMQRRARTRGAGGKPGVV" FT misc_feature 1359003..1359440 FT /note="HMMPfam hit to PF02639, DE Uncharacterized BCR, FT YaiI/YqxD family COG1671, score 5e-56" FT CDS 1359666..1361246 FT /transl_table=11 FT /gene="ilvA" FT /locus_tag="BB1268" FT /product="threonine dehydratase biosynthetic" FT /EC_number="4.3.1.19" FT /protein_id="CAE31766.1" FT /translation="MSDTATAPTTAEPRTAPPARADLLAHYARKTLSAPVYDVALETPL FT QAAPRLSRQLDCRVLLKREDLQPVFSFKIRGAYNRVAQLSPDERGRGVIAASAGNHAQG FT LALAAARLGIPALIVMPRTAPELKIDGVLAHGAQVALHGDAFPAALAHAQELAEREGRV FT FIPPYDDPDVIAGQGTVGMEILRQHPGRLDAIFVPVGGGSLIAGVAAYVKHVRPEIRII FT GVEPVDSNCLQAALAAGRRVVLDRVGTFADGVAVAQIGHHNFEICRDHVDEVICVTNDE FT ICAAIKDIYDDTRSITEPAGALAVAGLRKYAERGEAAGRTLVAIDSGANINFDRLRHVA FT ERAALGEQREALIAVTIPERPGSFKAFCAALGPRQITEFNYRYHPGDEAQIFVGVRTHP FT EHDRRDALLAGLRGQGFAVQDLSDDELAKLHVRHMVGGRANQIDDEQVFRFEFPERPGA FT LFDFLSKLGGRWNITMFHYRNHGSADGRVVAGLQVPADERHLVPQALTRIGYPFRDETA FT NPSYRLFIR" FT misc_feature 1359771..1360652 FT /note="HMMPfam hit to PF00291, DE Pyridoxal-phosphate FT dependent enzyme, score 1e-101" FT misc_feature 1359855..1359896 FT /note="PS00165 Serine/threonine dehydratases FT pyridoxal-phosphate attachment site." FT misc_feature 1360686..1360958 FT /note="HMMPfam hit to PF00585, DE C-terminal regulatory FT domain of Threonine dehydratase, score 2.7e-34" FT misc_feature 1360971..1361240 FT /note="HMMPfam hit to PF00585, DE C-terminal regulatory FT domain of Threonine dehydratase, score 1.9e-26" FT CDS 1361461..1361775 FT /transl_table=11 FT /locus_tag="BB1269" FT /product="putative membrane protein" FT /protein_id="CAE31767.1" FT /translation="MDSATIINLVIQLVAGAAGGNGLAKAAHSLNLGTTGNTIAGAIGG FT LAGGTWLGPAIAAMTGGAASGMNVGAIVGDVVGGGIGGAVLTLIVGIIRNLFANKGSAA FT " FT misc_feature join(1361470..1361538,1361575..1361643,1361686..1361754) FT /note="3 probable transmembrane helices predicted for FT BB1269 by TMHMM2.0 at aa 4-26, 39-61 and 76-98" FT CDS complement(1361798..1362433) FT /transl_table=11 FT /locus_tag="BB1270" FT /product="putative ArsR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2946" FT /protein_id="CAE31768.1" FT /translation="MLCSLLDGCARTATELAALADIGASSASAHFARLRAQGLVELAVQ FT GKHRYYQLADADVAQALEALLVVAGVPRAPFKPATPGPLCHARTCYDHMAGTVAVRLHD FT AMLAQRWLQPDGRDYRVTPAGAAALTSLGLDLGAIGRQRRRHAYACLDWSARRPHLGGA FT LGAALLQCCLQHGWVEQQLDSRALRVTAQGARRFDAWCRPRGRLADAA" FT misc_feature complement(1362230..1362433) FT /note="HMMPfam hit to PF01022, DE Bacterial regulatory FT protein, arsR family, score 0.0017" FT misc_feature complement(1362338..1362403) FT /note="Predicted helix-turn-helix motif with score FT 1133.000, SD 3.05 at aa 11-32, sequence FT RTATELAALADIGASSASAHFA" FT CDS 1362709..1363875 FT /transl_table=11 FT /locus_tag="BB1271" FT /product="putative acyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2945" FT /protein_id="CAE31769.1" FT /translation="MDSTLSPEHHEIRDAILQACRPFDADYWYRKDQDGGFPDDFHRAI FT AEAGWLGICIPQAYGGSGLGITEAAVMMQAVAESGAGMSGASALHMNIFGLNPVVKFGT FT EAQKQRVLPPLIRGEERTCFAVTEPNTGLNTTQLKTMAVRKGDRYVVHGAKTFISTASI FT AEKVLLLARTTPLEQVGRKTDGLSLFYTDFDRARIEVREIPKMGRKAVDCNQLFIDGLE FT IPADDLVGDEGKGFHYILHGMNAERVLVAAEAVGLGRCALARAARYARERVVFDRPIGQ FT NQGVQHPLAESWMELEAASLMTFHAAARFDRGESCGTEASAAKYLAAEAGFKACTAAVM FT THGGYGYAKEYHVERYLREALIPRIAPISPQMILNFVAEKVLGLPKSY" FT misc_feature 1362721..1363077 FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 6.2e-07" FT misc_feature 1363081..1363395 FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 2.1e-06" FT misc_feature 1363405..1363854 FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.7e-58" FT CDS 1363889..1364356 FT /transl_table=11 FT /locus_tag="BB1272" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2944" FT /protein_id="CAE31770.1" FT /translation="MTLLDTEVRIYWEDLEPGTRFGTRKRTVTETDLVNFVNLTWLTEE FT LFSNGEPADRAHMGITGRVVPGGLVYVFAEGLVAPSFQAAGIAFLNAELDIKGPTFVGD FT TLHVECEVVQRRMTSRPGRGLVRTRNTVVNQHGEPVLVYTPLRMMRTRQIP" FT CDS 1364381..1365370 FT /transl_table=11 FT /locus_tag="BB1273" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2943" FT /protein_id="CAE31771.1" FT /translation="MNSNRRRMLTAMAGMAGMTAFPFAHGSAGAWPERPIRLILPYAAS FT GPTDVVARRIAARLAERLGQQFIVENKPGAGGNIASEFVAKSAADGYTALYHSSGIAIA FT PALYSKMGYDPARDLAAVAMPASIPAIIIAGPALPASVATPAQFVQYLRDNPGKLSYGS FT GGVGNITHLAVELMLQETGTQATHVPYKGTAPAMVDLIGGRVHFMLDALSTALPAIREG FT RARAIAVTSPQRAAVLPDVPTLAETVIPKFAATTWHGVFVPASTPAAVVARLNAQINLV FT AQEPELARQFAEQAVELHASTPAAFAAFLGEEIARWGTAAREAGVTPA" FT misc_feature 1364381..1364458 FT /note="Signal peptide predicted for BB1273 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.443 between residues 26 and 27" FT misc_feature 1364531..1365358 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.5e-101" FT CDS complement(1365383..1366294) FT /transl_table=11 FT /locus_tag="BB1274" FT /product="putative LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2942" FT /protein_id="CAE31772.1" FT /translation="MDLRQLQQFVVLSETLNFHRAAERLHMAQPPLSTAIRKLEDELGI FT VLFDRKPRSLSLTVAGAAMLKHARRTLSNVDELQRCAREYVSGDQGRIVVGFSNTASNA FT VLPRILHSFQARYPRVELVLHESTTHELVSELAAHTVDVALLRTPLFDACDAELIDLEQ FT DHFILAVPADHPLAQQSCARLADLDGQRFIAFSREKVPAMHAIISLAFGEAGVTPKVVQ FT QIVQVPTAIALAESGIGMALVPSAAARYLRTGARLLPVVDLPASLRIGIALGYDALTAS FT AATLRFVENTRAVHAAAPPPAA" FT misc_feature complement(1365407..1366039) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.1e-34" FT misc_feature complement(1366109..1366288) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.2e-25" FT misc_feature complement(1366154..1366246) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1366184..1366249) FT /note="Predicted helix-turn-helix motif with score FT 1177.000, SD 3.20 at aa 16-37, sequence FT LNFHRAAERLHMAQPPLSTAIR" FT CDS 1366420..1367541 FT /transl_table=11 FT /locus_tag="BB1275" FT /product="putative racemase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2941" FT /protein_id="CAE31773.1" FT /translation="MGPLQGTRVVELAGIGPAPMACMLLADLGAEVVRIERAEPVELGV FT ARPARYNLLMRNRCLVAADLKQPAMVEQALDLVARADVLVEGFRPGVAERLGLGPQACQ FT ARNPRLVYGRMTGWGQSGPLAQAAGHDLNYVALTGIIHAIGRAGQPPSIPLALTGDMAG FT GALYLALGVLAALLERGRSGLGQVIDAAIVDGAASLATVFYGLCAAGLWQDARGTNILD FT GGAPFYDVYECADGAWISVGPIEARFYAQLLEKLELRAQDVGARDDRAAWPRARMAIAS FT RFRTRTRDAWCALLEGSDVCFAPVLSFAEAPAHAHLKARGTFVEVDGVVQPAPAPRFGR FT TPPATPRPPSESPDSTLAAVLARWAAEDEARRG" FT misc_feature 1366600..1367175 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 1.7e-64" FT CDS complement(1367538..1368770) FT /transl_table=11 FT /locus_tag="BB1276" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2940" FT /protein_id="CAE31774.1" FT /translation="MSRSLASALPAAPGAGAAPARHGRVVALVVGAGIVSAMQVGKVPA FT ALPELRAALDASLAQASWLLSAFAAIGAALGAGVGMAVDAWGARRMAVAGMLAQGVASL FT LGAMAGAIGWLLALRVAEGIGFLAVVVSAPSLIVAATGTAPARARALAAWSTFMPLGVA FT AAMLSAPALEYLGWSGMWRLYGLALLAYACWLAWGTRGLPGRAAARRTTLAGLRATLAA FT PGPRLYAMLFGLYTAAYFSIFGFLPSILAERLHVAPWAAGPLAALVVAACVAGNLGGGA FT LLARGVPRTRLMAAGFVLLALGTAVTMAPGVPGAAAYLACLAASALCGLVPTALLAGAP FT QHAPRPELAGATMGIIMQGNNTGLLVGPAVAGAIAGAWGWTWVAAWVGLLALAALGLIA FT RLARTPREQAP" FT misc_feature complement(join(1367574..1367627,1367637..1367696, FT 1367757..1367825,1367835..1367903,1367922..1367990, FT 1368033..1368101,1368159..1368227,1368255..1368323, FT 1368336..1368404,1368417..1368485,1368522..1368590)) FT /note="11 probable transmembrane helices predicted for FT BB1276 by TMHMM2.0 at aa 61-83, 96-118, 123-145, 150-172, FT 182-204, 224-246, 261-283, 290-312, 316-338, 359-378 and FT 382-399" FT misc_feature complement(1368720..1368770) FT /note="Signal peptide predicted for BB1276 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.944 between residues 17 and 18" FT CDS 1368895..1369767 FT /transl_table=11 FT /locus_tag="BB1277" FT /product="putative LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2939" FT /protein_id="CAE31775.1" FT /translation="MRTFAAVAQAGSFRAGAARLHRVQSAVSHAIANLEAQLRVTLFDR FT SVYKPVLTPAGQALLADVRIILAKVDALRAHAHELGEGVELGLSLAVDTLFPPDAVAHA FT LKAMHARYPSVGVRVEYASLGGPAQALKARRCTLAVAVLERPDDQIRRRFLAPVTTWAV FT AAPGHPLARGEAGTELADHLQVVVEDLSAATRGRDYGVLSPRTWRVGDMVTKLALLRAG FT VGWGSLPAWLVQADLRAGTLVRLPLAELGPDGAVQMRAYLSHRADEPLGPAARSLCDSL FT REGAAALRG" FT misc_feature 1368895..1369065 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.8e-15" FT misc_feature 1368925..1368990 FT /note="Predicted helix-turn-helix motif with score FT 1006.000, SD 2.61 at aa 11-32, sequence FT GSFRAGAARLHRVQSAVSHAIA" FT misc_feature 1368928..1369020 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1369135..1369752 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 6e-24" FT CDS 1369884..1370489 FT /transl_table=11 FT /locus_tag="BB1278" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2938" FT /protein_id="CAE31776.1" FT /translation="MFQRFELAQLPVSPWRNGGGATREVARHPQGAAADGFEWRVSVAD FT IGADGPFSAYPGIDRSITLLEGAGVRMRSADGTLDHLLDVALRPFAFAGEHAIDATLLG FT GPSRDFNVMTRRGRWRAEARVLHGQAALAPAPAGVLFAAGGDWRVQCDAGQALLRAGAG FT VVWRAAAGAIHATPLGGEGGLIAVRLLEAGATAVAPDA" FT CDS 1370606..1371472 FT /transl_table=11 FT /locus_tag="BB1279" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2937" FT /protein_id="CAE31777.1" FT /translation="MKQVIGTHSAPRPHWVGDGFPVRSLFSYHSLGRELSPFLLLDYAG FT PAQFDATARQRGVGEHPHRGFETVTIVYEGEVAHRDSTGQGGVIGPGDVQWMTAGAGIL FT HEEFHSEAFARRGGPLEMVQLWVNLPARDKMAAPTYQSIVDSDIPRLALDGEAGTVRVI FT AGAFGEAGAGPARTFTPVNVWDVRLAAGKQAVLPVPDGHNAALVVLRGTVLVNGAQVLR FT DAQMAVLERGGAGVQVEANNDAVLLVLSGEPIDEPVVGHGPFVMNTQAEIVQAIDDFNR FT GAFGRMG" FT misc_feature 1370615..1371376 FT /note="HMMPfam hit to PF02678, DE Uncharacterized BCR, YhhW FT family COG1741, score 4.2e-08" FT CDS 1371654..1372562 FT /transl_table=11 FT /locus_tag="BB1280" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2936" FT /protein_id="CAE31778.1" FT /translation="MSPSPLISHRAASADLAGMVRQARQRILLQGNVPGFDVARQIELL FT HGLAESELGRFLLLYRGLNAEWTHRLVTHQPGSGALAPLERVFYERLPAVLATRERHGH FT FRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH FT ALAGQITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT FT SFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFT FT DLRFEDDRARLFPTVIARKPA" FT CDS 1372757..1373968 FT /transl_table=11 FT /locus_tag="BB1281" FT /product="two component system sensor kinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2935" FT /protein_id="CAE31779.1" FT /translation="MSGSSALSFLRTLCSLRWLAIAGQAVTIVAVSSVLELDLPLRPLW FT LGVLVLVVFNLYASWRLRRLSDVSYVTAFAHLLVDIGVLAWMVGWSGGITNPFGLMFLI FT LTALAALALPSNWALATGLASLAGYTLAAIFGQPLRHEDTYTLLLGGLAFNFVISIGVV FT LYFSTRLAADMRARERELAALRERFTRNEGIVALATHAAAMAHELNTPLATMTLLADEI FT AAQASTVDLRNDVDTLQQLLTLCRERIRNLAVPTEVDLVRVVGQWRLVRPTVDLHRTGS FT LPASLRVDPAIAHLLQALLNNAADAGEAAGEPRVDLRLDYRDGVLTGEVSDHGAGFDPS FT HTLLPATSLFNSGKPGGLGVGLALSHATVEQLGGAMTMTAAEGGGARIRFTLPLGLGRA FT SAKP" FT misc_feature 1372757..1372822 FT /note="Signal peptide predicted for BB1281 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.650) with cleavage site FT probability 0.291 between residues 22 and 23" FT misc_feature join(1372793..1372861,1372871..1372939,1372958..1373026, FT 1373036..1373095,1373108..1373161,1373189..1373257) FT /note="6 probable transmembrane helices predicted for FT BB1281 by TMHMM2.0 at aa 13-35, 39-61, 68-90, 94-113, FT 118-135 and 145-167" FT misc_feature 1373342..1373527 FT /note="HMMPfam hit to PF00512, DE His Kinase A FT (phosphoacceptor) domain, score 0.0063" FT misc_feature 1373525..1373566 FT /note="PS00213 Lipocalin signature." FT misc_feature 1373615..1373941 FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 7.5e-16" FT CDS 1373965..1374519 FT /transl_table=11 FT /locus_tag="BB1282" FT /product="two component system response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2934" FT /protein_id="CAE31780.1" FT /translation="MNLSEPGLLIDDDELYLRTLQRSLARQGLETRTAASIAEALRVAE FT DIRPSFALVDLRLGEEDSGLTLIRPLRALRADMRILLVTGYASVATAVEAIKRGADDYL FT PKPATAPMILRTLGLLKAESVTIESTMTPLHRLEWEHIQQALSETGGNVSAAARLLGMH FT RRSLQRKLAKKPGPEREAQLD" FT misc_feature 1373986..1374336 FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 1.2e-17" FT misc_feature 1374364..1374486 FT /note="HMMPfam hit to PF02954, DE Bacterial regulatory FT protein, Fis family, score 1.4e-11" FT misc_feature 1374415..1374480 FT /note="Predicted helix-turn-helix motif with score FT 1302.000, SD 3.62 at aa 151-172, sequence FT GNVSAAARLLGMHRRSLQRKLA" FT CDS 1374728..1375642 FT /transl_table=11 FT /gene="cyoA" FT /locus_tag="BB1283" FT /product="putative ubiquinol oxidase polypeptide II" FT /note="ortholog of Bordetella pertussis (BX470248) BP2933" FT /protein_id="CAE31781.1" FT /translation="MKHPHLATIARTLGVGAVLLLGGCTLEVLSPKGDIGAQEKTLILT FT ALGLMLIVVVPVILMTLYFVWKYREGSVHAQREYAPKWSHSNAIEAVVWTVPCIIVAIL FT AVLTWKSSHALDPYRPIESDVKPVNIDVVSLDWKWLFIYPDYDIATVNEIVFPVDAPVQ FT FRITSASVMNSFFIPQLGSQIYSMAGMETKLHLIAREAGSYDGLSANYSGAGFSGMRFK FT AIATTDQGFEDWIARIRATNNPLTPQAYADLARPSERTPVTLYSTAPTGMFDFIMHNQM FT SKLAGVDPFNCTPATKNLIATAE" FT misc_feature join(1374746..1374814,1374857..1374925,1374986..1375054) FT /note="3 probable transmembrane helices predicted for FT BB1283 by TMHMM2.0 at aa 7-29, 44-66 and 87-109" FT misc_feature 1374767..1374799 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1375643..1377625 FT /transl_table=11 FT /gene="cyoB" FT /locus_tag="BB1284" FT /product="ubiquinol oxidase polypeptide I" FT /note="ortholog of Bordetella pertussis (BX470248) BP2932" FT /protein_id="CAE31782.1" FT /translation="MMFGKLSLEAIPFHDPIIMGTMVVVILGGATLLGAVTYFGKWKYL FT WTEWFTSVDHKKIGIMYIIVALVMLLRGFADAIMMRTQQAVASADSAGFLPPHHYDQIF FT TAHGVIMIFFMAMPFITGLMNIVVPLQIGARDVAYPFLNSLSFWLFMVGVVLLMLSLFV FT GEFAATGWLAYPPLSGLDYSPGVGVDYYLWALQLSGLGTTLSGINFIVTIMKMRAPGMA FT LMKMPVFTWTALVTNILIVAAFPVLAATLALLTLDRYLDMHFFTNDLGGNVMMYVNLIW FT IWGHPEVYILVLPCFGVFSEIVATYSKKTLFGYKSMVYATASIGVLSFLVWLHHFFTMG FT AGANVNAFFGIMTMIISIPTGAKVFNWLFTMYRGRVEFSLPMLWTIGFMIIFVIGGMTG FT VLMAIPAVSFVLHNSLFLVAHFHNTIIGGVVFGCIAGMVYWFPKAFGFKLNERLGRYSF FT WCWFVGFFLTFTPMYLLGFKGMTRRLNTYDNPEWQPYLLVALVGATLIMLGIFFLLQQV FT FVSIRDRKENMDVTGDPWGGRTLEWSTSSPPPFYNFAHVPHIDSLDQFWEDKENGRAYQ FT RPAKYEDVHMPRNTAAGIYIGAFGLAMSFGLIWHMWWLAIVGFLGMIVSFVVRSYDRDV FT DYYVPAKEVEEIENAYFGKLQQKAA" FT misc_feature join(1375685..1375753,1375814..1375882,1375958..1376026, FT 1376063..1376131,1376210..1376278,1376339..1376407, FT 1376471..1376539,1376573..1376641,1376684..1376752, FT 1376789..1376857,1376900..1376968,1377005..1377073, FT 1377116..1377184,1377410..1377463,1377473..1377526) FT /note="15 probable transmembrane helices predicted for FT BB1284 by TMHMM2.0 at aa 15-37, 58-80, 106-128, 141-163, FT 190-212, 233-255, 277-299, 311-333, 348-370, 383-405, FT 420-442, 455-477, 492-514, 590-607 and 611-628" FT misc_feature 1375784..1377160 FT /note="HMMPfam hit to PF00115, DE Cytochrome C and Quinol FT oxidase polypeptide I, score 6e-258" FT misc_feature 1376483..1376647 FT /note="PS00077 Heme-copper oxidase catalytic subunit, FT copper B binding region signature." FT CDS 1377629..1378240 FT /transl_table=11 FT /gene="cyoC" FT /locus_tag="BB1285" FT /product="cytochrome O ubiquinol oxidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2931" FT /protein_id="CAE31783.1" FT /translation="MTNAVATHPHAGDHHGHHDDGSKTVLGFWIYLMSDLLIFSVLFAT FT FAVLSSATAGGPTGKDLFDLSFVLGETMLLLVSSFTFGMAMLNLHAGSKGKVIAWLWVT FT FLFGAGFIVMEVYEFHHLLSIGAGPQTSAYLSAFFTLIGTHGLHVTFGLIWILVMIHML FT SRYGIDPITTRRLSCLSLFWHFLDIVWICVFTFVYLLGAL" FT misc_feature 1377629..1378234 FT /note="HMMPfam hit to PF00510, DE Cytochrome c oxidase FT subunit III, score 0.0014" FT misc_feature join(1377707..1377775,1377833..1377901,1377920..1377979, FT 1378037..1378105,1378166..1378234) FT /note="5 probable transmembrane helices predicted for FT BB1285 by TMHMM2.0 at aa 27-49, 69-91, 98-117, 137-159 and FT 180-202" FT CDS 1378240..1378587 FT /transl_table=11 FT /gene="cyoD" FT /locus_tag="BB1286" FT /product="cytochrome 0 ubiquinol oxidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2930" FT /protein_id="CAE31784.1" FT /translation="MSHAVTSEDHGHADHGSLKSYLIGFAISLVLTFGSFGLVMAGTVP FT RGIALAGVVVLCVAQLLVQLVFFLHMGGSKKQRDNVTTFVFTILIIAIIVGGSVWVLHN FT MNANMMHPMPG" FT misc_feature 1378282..1378542 FT /note="HMMPfam hit to PF03626, DE Prokaryotic Cytochrome C FT oxidase subunit IV, score 4.5e-30" FT misc_feature join(1378300..1378368,1378378..1378446,1378480..1378548) FT /note="3 probable transmembrane helices predicted for FT BB1286 by TMHMM2.0 at aa 21-43, 47-69 and 81-103" FT CDS complement(1378705..1379052) FT /transl_table=11 FT /locus_tag="BB1287" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2929" FT /protein_id="CAE31785.1" FT /translation="MLPNHPERGQIRLENVLNALGNPLRLTVVRALAAGGECSCSAVLQ FT GIPKSTLTHHWRVLRDSGVIWQRPNGRENLLSLRRDDLDARFPGLLDTLLGAVHHDALT FT EETTARNLAPR" FT misc_feature complement(1378762..1379004) FT /note="HMMPfam hit to PF01022, DE Bacterial regulatory FT protein, arsR family, score 0.006" FT CDS 1379192..1380622 FT /transl_table=11 FT /locus_tag="BB1288" FT /product="putative transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2928" FT /protein_id="CAE31786.1" FT /translation="MPSLSAARAHRSLGWSLALLAFAQLIYSLDINIVFVALPEIGAGL FT GFSEQTLQWVVSAYTVFCGGFLLLGGRAVDLLGQRRMFIGALWLYALSSLVGGLAWNPA FT VIVIARAVQGIGAALLFPSTLSLINRLFEEGPPRNRALAIWGGAGASGLTLGSLAGGVL FT TSAYGWPSVFFVNVLLAGIAIVAAFLVIPKDAPRAARRSFDMPGALTATAGATLLVYAL FT VQGPEDGWLATPIFASLALAAVFLLAFAVIESRSRDPLMPMRLFGNGSLVVGMILTFIF FT MGTFGALPYFLTLLFQNVQGYSALQTGLAFIVPSLAIFFGTQLGARLANRLSARSTLVA FT GFVTGIAGTLALASAAFVGAPYALILPGLVVSGIGQGIVWTAMWIVAASGVAHHEQGIA FT SGMASTTLNVGNAIGIAVLVAYANRGIGGLHGDALRAGLAAGAQHAFYLAAAGLVLGLL FT VSLAFSPRAGAGARVGAA" FT misc_feature 1379192..1379260 FT /note="Signal peptide predicted for BB1288 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.838) with cleavage site FT probability 0.683 between residues 23 and 24" FT misc_feature join(1379228..1379296,1379339..1379398,1379435..1379494, FT 1379507..1379575,1379612..1379680,1379693..1379761, FT 1379798..1379866,1379879..1379947,1379984..1380052, FT 1380095..1380163,1380200..1380268,1380281..1380349, FT 1380410..1380469,1380512..1380580) FT /note="14 probable transmembrane helices predicted for FT BB1288 by TMHMM2.0 at aa 13-35, 50-69, 82-101, 106-128, FT 141-163, 168-190, 203-225, 230-252, 265-287, 302-324, FT 337-359, 364-386, 407-426 and 441-463" FT CDS complement(1380654..1381151) FT /transl_table=11 FT /locus_tag="BB1289" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2927" FT /protein_id="CAE31787.1" FT /translation="MSRFACRLHAHAIRCFERIPHCLIALLGRCSIAATFWLSGQTKVE FT GFAVNALAGEFDLGWPMLSESAISLFRDEYQVPLLPPELAALLAASVEHILPVLLILGL FT ATRWSALGLLLMTLVIQVFVYPDAYATHGVWATVLLYLVARGPGCVSLDAWLARRRARR FT QG" FT misc_feature complement(join(1380681..1380749,1380792..1380860)) FT /note="2 probable transmembrane helices predicted for FT BB1289 by TMHMM2.0 at aa 98-120 and 135-157" FT CDS complement(1381155..1381910) FT /transl_table=11 FT /locus_tag="BB1290" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2926" FT /protein_id="CAE31788.1" FT /translation="MHPQAAFARALLDPLAPCPPGLRRAGDADPAQRYAIYRNNVVASL FT IQALADTFPVCRELVGPDFFHAMAHAYVARRLPRSPVLARYGGAFAAFVAAHAPAAGVP FT YLADMARLEYLRVRAYCAADAVALDAAAAGARIAALSKPASARLRLHPAARALVSPYAI FT HALWAAHQGALDIAEVDPYAAQGALVLRDPAEAVLAIPLAASAAAFVRALRAGLPLSAA FT HSQAADPGLALDHLLALLIRHGAVISIEE" FT CDS complement(1381925..1382794) FT /transl_table=11 FT /locus_tag="BB1291" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2925" FT /protein_id="CAE31789.1" FT /translation="MPARASRPAPGLPARAGLGFKPEHYATLVEQPPDLGFFEIHAENY FT MVPGGPAHAQLAWLRERYAISVHGVGLSLGGHDPLDARLLAGHRQLQRRYAPDSISEHL FT AWSRHDGRYFNDLLPIVYDDAALRRVCAHIDQFQQCLGQPILLENPATYVRFEASHIDE FT AQFLCELVARTGCGLLLDVNNVYVSAVNHGFDARAYLARLPLAAVGEIHLAGHARQRDA FT HGRAVLIDSHDAPVDEAVWDLYEYTLALTGPVATLLERDGNIPPLAALLAETDRVAACL FT ARGLALAA" FT CDS complement(1382806..1383138) FT /transl_table=11 FT /locus_tag="BB1292" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2924" FT /protein_id="CAE31790.1" FT /translation="MLAVFFTLRSSFMKTSTTAMLTLALSSAAVLAAAPAAHAADMEKC FT YGVALKGKNDCKAGAGTTCAGTSKVDYQGNAWKQVPKGTCEQTKSPTSPTGFGQLEAFK FT EVKTGS" FT misc_feature complement(1383022..1383138) FT /note="Signal peptide predicted for BB1292 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.987 between residues 39 and 40" FT CDS 1383404..1383841 FT /transl_table=11 FT /locus_tag="BB1293" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2923" FT /protein_id="CAE31791.1" FT /translation="MIQTGSRSRRLLARPLAWIALLAILWAACAPLLMQMAPQRHAPLA FT LSVDYCTEQGTATVQLPLLLADAGQADEHDGHGAHHDGLGHLEHCPFCRHAQGDLALLP FT VMPRVQPLPARAISYPPLYYVARASQHAWTGAQPRAPPAAA" FT misc_feature 1383404..1383505 FT /note="Signal peptide predicted for BB1293 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.470 between residues 34 and 35" FT misc_feature 1383458..1383490 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1384005..1386203 FT /transl_table=11 FT /gene="bfrG" FT /locus_tag="BB1294" FT /product="putative TonB-dependent receptor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2922" FT /protein_id="CAE31792.1" FT /translation="MKQTSLYYAALGLAGLALAAPARAQEQQVPAQLETVVVHGAPEAN FT GPLDLDAVDSTGSRLGLTLRETPASVTVINREQIEARGALDTQEIARGIVGVDNASPPG FT SAGSVSYRGFSGSQVSQLFNGISVQYDVIAARPIDSWIYDRVEAIGGPSSFLFGAGAVG FT GAINYVTKVAQRDTFYDGQLRLGSYGARQASVGLNRQLAGEPGGRGQYLRIDANANASD FT GWVDGNRSHAEQVAASLLSDLGERVTHTLALEYQHETVHRPYWGTPLTTDGDGVVRGEG FT HIRGGTRFKNYNVDDGQYEQSVWWLRSLTEWQASDRLSFRNTLYYYRADRDFQNLETYR FT YNLGNSQVLRSGALLQRHEQRLLGNRIEALYHGSLGGLRSDWSFGADYSVNRQTRYPTS FT VAGQVDSVDPYEFDPGEFYDIPGMRRGHVPDRDNKVRTLAFMLENRTEVGGGVALVTAL FT RHDIIDLDLTNRRAASAASPGHASRRYNPTTGRVAVNWEVSPGATLYAQYATAADPPSG FT VLSTATFADVLNNDKLTTGTQVEAGGKFAFWDGRGTATVAVYEIKRKNLATPDPLNPGS FT SLPVGSQSARGLELAGGLQLTRALSLQANLALVDPRYDDFSQNVGGVAVSRNGKVPVNT FT PRRLANVWLDYAFAPDWRASLAARHVGKTYADAANTVWAPAYTVFDAALSHRIDRHFSV FT TARVRNLTDKVYAASVTGAPMYYLGAPRSVELALQARF" FT misc_feature 1384005..1384076 FT /note="Signal peptide predicted for BB1294 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.981 between residues 24 and 25" FT misc_feature 1384005..1384127 FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT misc_feature 1385892..1386197 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00593, DE TonB dependent receptor FT C-terminal region, score 1.7e-17" FT misc_feature 1385973..1385996 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1386215..1387684 FT /transl_table=11 FT /locus_tag="BB1295" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2921" FT /protein_id="CAE31793.1" FT /translation="MTTLVLRAKRWLYLLHRWMGVGLCLLFVLWFASGVVMMYVGYPKL FT TPAERLAHLPWLDAAQVRLGPAQALRAAGLEQAAEIRLAASRAGQPFYAVVPLAGGRTL FT RVDAASGQLAGRATPAQARASALAYFGARHAAREDGLVDEDAHTHTRTLDAHRPLYVFE FT MDDPARTRLYVSSSTGEVVRDAPRLERGWNYVGAWLHWLYPLRGAYWHDIVVWLSVLGV FT ALTVSGTVVGLWRWRFARPYASGSRSPYRERFMRWHHIAGLLFAATTLTWIFSGLMSMN FT PWQVFGTRATQLDRAAYRGGPLQAGNLPAGPAVAMPARELVWTRVAGQTLLQVYGAAGA FT AALRTADGAAPRTLAPATLGAALGRLLPGAAPPRIEVLDGYDSYYYARAPHTMLGHVEK FT PLPVWRVVYDDPRGTWLHVDPRSGEILGSLDRPRRVSRWLFAFLHSWDWPPLLQRRPAW FT DAVLIVLSLGGLLLSGAGVVIGWRRVGRKLR" FT misc_feature 1386215..1386328 FT /note="Signal peptide predicted for BB1295 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.906) with cleavage site FT probability 0.734 between residues 38 and 39" FT misc_feature join(1386272..1386340,1386854..1386922,1386983..1387051, FT 1387586..1387654) FT /note="4 probable transmembrane helices predicted for FT BB1295 by TMHMM2.0 at aa 20-42, 214-236, 257-279 and FT 458-480" FT CDS complement(1387687..1389012) FT /transl_table=11 FT /locus_tag="BB1296" FT /product="putative chromate transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2920" FT /protein_id="CAE31794.1" FT /translation="MPKGTKKLPDAALRKPRGLRILPVSRRPTTAPMPASPPPPAPGTP FT PSQAEAGGVGEVFGAFLRLGLTSFGGPVAHLGYFRHEFVQRRRWLDDAAYAELVALCQF FT LPGPASSQTGMALGLARAGWAGMAAAWIAFTLPSALFMLAFALGLGQLDGLAASGALHG FT LKLAAVAVVAQAVWSMGRSLCPDRARQALALGAAIAALLLPAAWMQVGIMLACGLAGWR FT LLPALAAPAGTALAIGVGRRTGLCALLLFAVLLAGLPLWAAASGSPAWQLADGFYRAGA FT LVFGGGHVVLPLLQAAVVPGGEVSQAAFLAGYGAAQAVPGPLFSFAAFLGALLPAPLGG FT WPGALACTALIFLPGALLLVGALPFWNVLRGRPAVRAALAGVNAGVVGILLAALYDPVW FT TGAVASRPDFAIAAGAFGLLARGRLPPLAIVALCAAASALTG" FT misc_feature complement(1387693..1388214) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02417, DE Chromate transporter, FT score 0.0016" FT misc_feature complement(join(1387810..1387878,1387912..1387980, FT 1388023..1388091,1388110..1388178,1388221..1388280, FT 1388293..1388361,1388374..1388442,1388479..1388547, FT 1388575..1388643,1388776..1388844)) FT /note="10 probable transmembrane helices predicted for FT BB1296 by TMHMM2.0 at aa 57-79, 124-146, 156-178, 191-213, FT 218-240, 245-264, 279-301, 308-330, 345-367 and 379-401" FT misc_feature complement(1388335..1388859) FT /note="HMMPfam hit to PF02417, DE Chromate transporter, FT score 1.4e-21" FT misc_feature complement(1388365..1388397) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(1388515..1388547) FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT CDS 1389131..1389805 FT /transl_table=11 FT /locus_tag="BB1297" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2919" FT /protein_id="CAE31795.1" FT /translation="MRALLAALALALLAACGSTSGGSGGAFYRVQSGDTLHSIARKHGQ FT SVGDLVRWNKLANANRIEKGQLLRVKPPGTGGSASPPPRAASGKSDGQAPAKPAAPIRG FT ITLIWPADGKVTRQFNGSSVLGITIANSAGTSVVAAAGGTVAYASNGLRGYGNLVIVRH FT DGSFLTIYAHNRKLLVKQGQRVSQGQRIAEMGDTDSSQVNLYFELRRDGKAVNPAGALP FT RR" FT misc_feature 1389146..1389178 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 1389212..1389343 FT /note="HMMPfam hit to PF01476, DE LysM domain, score FT 1.5e-11" FT misc_feature 1389482..1389529 FT /note="PS00012 Phosphopantetheine attachment site." FT misc_feature 1389542..1389790 FT /note="HMMPfam hit to PF01551, DE Peptidase family M23/M37, FT score 4.9e-33" FT CDS 1389927..1390340 FT /transl_table=11 FT /locus_tag="BB1298" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2918" FT /protein_id="CAE31796.1" FT /translation="MATEIYVNLPVADLPRSVAFFKQLGYAFNPQFTDENATCMIVDDN FT IYVMLLVESFFQTFTPKAVCDAHTQTEVLLCLSMDSRAEVDRMVRRAVAAGGKTYNEAK FT DHGFMYQHGFQDLDGHIWELVYMDPTAAPPPGD" FT misc_feature 1390200..1390223 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1390348..1390800) FT /transl_table=11 FT /locus_tag="BB1299" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2917" FT /protein_id="CAE31797.1" FT /translation="MLYASLKFLHLLSIILWVGGMAFAHCFLRPAVAALEPPARLRLMH FT DVLGRFLRATQYAVLIVLATGAYMMAQAMGAGLARPPVGWHVMAGLGLLMALVFVHVRY FT VLFRRLARAVAAQDWPAGGAAMAPIRGWVAVNLALAVVILAALMLA" FT misc_feature complement(join(1390354..1390422,1390480..1390548, FT 1390576..1390644,1390705..1390773)) FT /note="4 probable transmembrane helices predicted for FT BB1299 by TMHMM2.0 at aa 10-32, 53-75, 85-107 and 127-149" FT misc_feature complement(1390702..1390800) FT /note="Signal peptide predicted for BB1299 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.984) with cleavage site FT probability 0.860 between residues 33 and 34" FT CDS 1390931..1391413 FT /transl_table=11 FT /locus_tag="BB1300" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2916" FT /protein_id="CAE31798.1" FT /translation="MPSFDVVSEVDKHELTNAVDQANRELSTRFDFKGTNASFELEGYV FT VTQVAPSAFQLKQMLDILRGRLSARSIDVRCMDVADPLENLGGARQKVTIKQGIEQAIA FT KKLIAAIKASKVKVESQINGEKLRITGKKRDDLQAVIALLRKTDVDLPLQFENFRD" FT CDS 1391553..1391921 FT /transl_table=11 FT /locus_tag="BB1301" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2915" FT /protein_id="CAE31799.1" FT /translation="MSIRHTAALLLVSSLYAGAALAQAPAMEKGGMLVDAKGMTLYTFD FT KDAGGKSVCNDQCAKNWPPLMAAGDAKAQGDWSIVKRDDGSSQWAHKGKPVYLFAADAK FT PGDKTGDNKNNVWHVIKP" FT misc_feature 1391553..1391618 FT /note="Signal peptide predicted for BB1301 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 22 and 23" FT misc_feature 1391616..1391759 FT /note="HMMPfam hit to PF03640, DE Secreted repeat of FT unknown function, score 2.1e-11" FT misc_feature 1391781..1391915 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03640, DE Secreted repeat of FT unknown function, score 5.8e-12" FT CDS 1391972..1392499 FT /transl_table=11 FT /locus_tag="BB1302" FT /product="putative RNA polymerase sigma factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2914" FT /protein_id="CAE31800.1" FT /translation="MRPEDEALIVACIPSLRRYARGLTGERDRADDLVQDTLERAWSRF FT SRWQRRGELRAWMFGIMHNQFIDGLRAQKRQADYGAETEIPELPVRATQADRLEVRDLD FT RHLQRLPADLRAVLLLVAVEEFTYREAAQVLEVPIGTVMSRLSRARERLAALLQAQAEA FT PAASTVQRIRAT" FT misc_feature 1392023..1392190 FT /note="HMMPfam hit to PF00776, , score 5.6e-08" FT CDS 1392496..1393299 FT /transl_table=11 FT /locus_tag="BB1303" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2913" FT /protein_id="CAE31801.1" FT /translation="MSEHPFHVLDVPGAPIGEADLHAYADGQLGDARRAEVAAFLAAHP FT EAHARVEGWRRQNAGLRALLDPVLEEPLPLRLPLAPPPARYRWGMLAAGLAIAVTSASA FT AWLVRGELDARQAVAQRQAAAEGMVFARRAAVAHAVYAADVRRPVEMGAEQEQALVTWL FT TRRLGAAVHAPNLAAAGYHLMGGRLLPGGQGPVAQFMYGGPGGQRLTLYVTREAQGDQT FT AFRFTQDGPVRVFYWVEGKFGYALSGELERDALLKVAQEVYRELG" FT CDS complement(1393321..1394112) FT /transl_table=11 FT /locus_tag="BB1304" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2725" FT /protein_id="CAE31802.1" FT /translation="MSTLYTLTRGDAPLVVNIPHVGTWVPAELRPLMQAEALGVPDTDW FT HVDRLYDFVRARGVTLMAATHSRYVIDLNRDPGGGVLYPGASNTELCPTTRFDGGPVWR FT DEAAGHPLLDVAARRRQYFDPYHAQLAAELARVQARHGYAVLLDGHSIISHCARFFDGK FT LPDLNLGTADGASCPPGLQQAAAQALQADGFTTAVNGRFKGGWITRHYGRPAEGYHALQ FT LEMSLSAYMTEQAPFHWQPERAEPLRQVLETLVAALLAWRA" FT CDS complement(1394144..1394848) FT /transl_table=11 FT /locus_tag="BB1305" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2726" FT /protein_id="CAE31803.1" FT /translation="MSTEKTAIVTAGGSGMGAAAARRLAADGFRVAILSASGKGEALAA FT ELGGLGMTGSNLEPADLQALVDATLQRWGRIDAVVNSAGHGPKGALLEIDDAGWHAGMD FT YYLLNVVRIARLVTPVMREQGGGSIVNISTYATFEPEAAFPTSGVLRAGLAAFTKLYAD FT QYAADNVRMNNVLPGFIDSLPEKEDRRARIPMGRYGRAEEVADLIAFLASSQSSYITGQ FT NIRIDGGITRSV" FT misc_feature complement(1394159..1394842) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 1.8e-42" FT misc_feature complement(1394774..1394848) FT /note="Signal peptide predicted for BB1305 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.973) with cleavage site FT probability 0.754 between residues 25 and 26" FT CDS complement(1394923..1395723) FT /transl_table=11 FT /locus_tag="BB1306" FT /product="exported SurF1-family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2727" FT /protein_id="CAE31804.1" FT /translation="MTHPAQQNAAGGREPAPTRRPRGAATLIILAALAAALFAGACALG FT VWQIHRLAWKRNLIAQVETRAHAPATPAPAPADWPGLSNANAEYRRVAASGTWHYAGQT FT LVQAATELGSGYWVMTPLRLDGGGTVLVNRGFVLPEWRRQQSAGDAARPDAPARVEGLL FT RMGEPAGGFLRENKPAAELWYSRDLPAIAARRGLGEVAPYFIDADAAAGAPRNPAQAPV FT GGLTVLSFPNNHLGYAITWFGLAAMVLAGAAIVARHELRARRRG" FT misc_feature complement(1394929..1395723) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02104, DE SURF1 family, score FT 1.9e-06" FT misc_feature complement(join(1394956..1395024,1395577..1395645)) FT /note="2 probable transmembrane helices predicted for FT BB1306 by TMHMM2.0 at aa 27-49 and 234-256" FT misc_feature complement(1395601..1395723) FT /note="Signal peptide predicted for BB1306 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.698) with cleavage site FT probability 0.526 between residues 41 and 42" FT CDS complement(1395720..1396127) FT /transl_table=11 FT /locus_tag="BB1307" FT /product="cytochrome ubiquinol oxidase subunit IV" FT /note="ortholog of Bordetella pertussis (BX470248) BP2728" FT /protein_id="CAE31805.1" FT /translation="MSERTEHAADLPPPHGAGHHHEDDDGPHGTLASYLTGFVLAAILT FT AIPFWLVMDGVFASSRTTALVILAFAVVQIVVHLVYFLHMDAKSESGWNMLALIFTLVL FT VVITLSGSIWIMYHLNSNMMPMSVHDVRNMP" FT misc_feature complement(join(1395777..1395845,1395882..1395941, FT 1395969..1396037)) FT /note="3 probable transmembrane helices predicted for FT BB1307 by TMHMM2.0 at aa 31-53, 63-82 and 95-117" FT misc_feature complement(1395783..1396046) FT /note="HMMPfam hit to PF03626, DE Prokaryotic Cytochrome C FT oxidase subunit IV, score 1.5e-42" FT CDS complement(1396124..1396762) FT /transl_table=11 FT /locus_tag="BB1308" FT /product="cytochrome ubiquinol oxidase subunit III" FT /note="ortholog of Bordetella pertussis (BX470248) BP2729" FT /protein_id="CAE31806.1" FT /translation="MSEPTATTLPPSAPDPERLFYVPGEHHPKNGTLLGFWVYLMSDCL FT VFACLFATYGVVGRNYDGGPTGAELFDLPLVAVNTSLLLLSSITYGFAMLEMRRQRIGA FT TQAWLAVTGLLGAGFLGLELYEFAHLIHQGAGPQRSAFLSAFFTLVGTHGLHVTFGIVW FT LVTLMVQVSRHGLIPENRRRLMCLSMFWHFLDLIWVGVFTFVYLMGVLP" FT misc_feature complement(join(1396133..1396201,1396262..1396330, FT 1396373..1396441,1396478..1396546,1396589..1396657)) FT /note="5 probable transmembrane helices predicted for FT BB1308 by TMHMM2.0 at aa 36-58, 73-95, 108-130, 145-167 and FT 188-210" FT misc_feature complement(1396133..1396684) FT /note="HMMPfam hit to PF00510, DE Cytochrome c oxidase FT subunit III, score 9e-06" FT CDS complement(1396755..1398776) FT /transl_table=11 FT /locus_tag="BB1309" FT /product="cytochrome ubiquinol oxidase subunit I" FT /note="ortholog of Bordetella pertussis (BX470248) BP2730" FT /protein_id="CAE31807.1" FT /translation="MAHAEIDMTDQPDQTLLLGRLSWEAIPYHEPILLVTFIVVALGGI FT ALLGAITYMRAWGYLWREWFTSIDHKKIGIMYVVLGIVMLLRGFADAIMMRLQQAIAFG FT DNLGYLPPHHYDQIFTAHGVIMIFFVAMPLVTGLMNYIVPLQIGARDVAFPFLNNFSFW FT MTATGAVLVMMSLFVGEFARTGWLAYPPLSGILHSPDVGVDYYIWALQIAGVGTLLSGV FT NLLVTIVKMRAPGMTLMRMPVFTWTALCTNILIVAAFPVLTAVLALLSMDRYVGTNFFT FT ADGGGNAMMYVNLVWIWGHPEVYILILPAFGIFSEVVATYCRKRLFGYASMVYATVVIT FT VLSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIHFEVPMLW FT TLGFMVTFVIGGMTGVLLAVPPADFALHNSLFLIAHFHNVIIGGVLFGLMAGITYWFPK FT AFGYRLDPFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRVNHFEDASLQIWFQAAALG FT ALLIALGIASFLIQLVVSYRRREALRDDTGDPWDGRTLEWSTSSPPPAYNFAFTPRVHD FT LDAWWQMKQCGYARPQQGFVPIHMPSNTWAGIVLAGLSGVLGFALIWHMWPLVVLAFAA FT LIGVTIAHTFNYQRDHYVPAEEVVRCEAARTALLSRHV" FT misc_feature complement(join(1396851..1396919,1396929..1396997, FT 1397181..1397249,1397292..1397360,1397421..1397489, FT 1397517..1397585,1397622..1397690,1397733..1397801, FT 1397820..1397888,1397964..1398032,1398090..1398158, FT 1398243..1398311,1398348..1398416,1398492..1398560, FT 1398618..1398686)) FT /note="15 probable transmembrane helices predicted for FT BB1309 by TMHMM2.0 at aa 31-53, 73-95, 121-143, 156-178, FT 207-229, 249-271, 297-319, 326-348, 363-385, 398-420, FT 430-452, 473-495, 510-532, 594-616 and 620-642" FT misc_feature complement(1397214..1398590) FT /note="HMMPfam hit to PF00115, DE Cytochrome C and Quinol FT oxidase polypeptide I, score 6.3e-246" FT misc_feature complement(1397727..1397891) FT /note="PS00077 Heme-copper oxidase catalytic subunit, FT copper B binding region signature." FT CDS complement(1398813..1399778) FT /transl_table=11 FT /locus_tag="BB1310" FT /product="putative ubiquinol oxidase subunit II" FT /note="ortholog of Bordetella pertussis (BX470248) BP2731" FT /protein_id="CAE31808.1" FT /translation="MPLFQRLRGLTMLGVLPLLAGCNAVLLSPSGDIALQQRNLIIIST FT GLMLLIIVPVIALTLLFAWRYRAGNTEARYEPDWNHSTVLELLIWSAPLLIIIALGALT FT WVSTHQLDPYRPLARIADGRDVPPGTKPLVVQVAALDWKWLFVYPEQGIATVNEMAAPV FT DRPIQFQITSSSVMNSFFVPALAGQIYAMPGMQTTLHAVINHPGEYEGLSANYSGGGFS FT GMRFRFHGLDQAGFDQWIARVRQAGGALDASAYQALAQPSEREPVRHYASVAPDLFQRI FT VGRCVEPGRACMDHGKPSPAKALATQLAGQICRGEQDLVL" FT misc_feature complement(join(1399461..1399529,1399587..1399655, FT 1399698..1399760)) FT /note="3 probable transmembrane helices predicted for FT BB1310 by TMHMM2.0 at aa 7-27, 42-64 and 84-106" FT misc_feature complement(1399698..1399778) FT /note="Signal peptide predicted for BB1310 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.908) with cleavage site FT probability 0.462 between residues 27 and 28" FT misc_feature complement(1399713..1399745) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1400015..1401346 FT /transl_table=11 FT /locus_tag="BB1311" FT /product="putative membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2732" FT /protein_id="CAE31809.1" FT /translation="MSTTTQHPGYAPATPHPGSSGGASHSHVAPGEIAVGVVIGRASEY FT FDFFVFGIACVLVFPSVFFPFESELDGMLWAFVIFSFAFIARPFGTALSMAVQRRWGRG FT AKLTAALFLLGTATCGMAFLPGYDAIGMYAILLLSLFRCLQGLALGGSWDGLPSLLALN FT APAGRRGWYAMLGQLGAPIGFMIASALFLFLISTLARDDFLDWGWRYPFFVAFAINVVA FT LFARLRLVVTEEYTQLMEEGELEPIRTTEMLREQGYNMLIGAFAALASYALFHLVTVFP FT LSWIAAGASQMSGDVLVVQIAGAALAIVCTLASGWLADRIGRRTTLGLMALLIGVFALF FT TPWLLGGGPLAQDAFILIGFALLGLSYGQASGTVTANFIRRFRYTGAALTADMAWLLGA FT AFAPLVALGLSARFGLVAVSVYLLSGVACTLLALRVNRLLETRD" FT misc_feature 1400111..1401331 FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 3.9e-07" FT misc_feature join(1400156..1400215,1400228..1400296,1400333..1400386, FT 1400399..1400467,1400525..1400593,1400636..1400704, FT 1400804..1400872,1400900..1400968,1400987..1401055, FT 1401083..1401151,1401170..1401238,1401251..1401319) FT /note="12 probable transmembrane helices predicted for FT BB1311 by TMHMM2.0 at aa 48-67, 72-94, 107-124, 129-151, FT 171-193, 208-230, 264-286, 296-318, 325-347, 357-379, FT 386-408 and 413-435" FT misc_feature 1400954..1401007 FT /note="PS00216 Sugar transport proteins signature 1." FT CDS 1401454..1401855 FT /transl_table=11 FT /locus_tag="BB1312" FT /product="conserved hypothetical protein" FT /protein_id="CAE31810.1" FT /translation="MNAPPILRQPCPPGACVCERERLQADPQGDLRILKLTREEEKRLT FT SRLENLASLDDLRAMQGRMYALLGLVVRIVPSARGVRTVRGIAIELDAQPGLCRKTRAA FT IPAAIRRGFERNPEIVYALLNERDLLSGA" FT CDS complement(1401868..1402854) FT /transl_table=11 FT /locus_tag="BB1313" FT /product="putative amino-acid dehydratase" FT /EC_number="4.2.-.-" FT /protein_id="CAE31811.1" FT /translation="MLDVTSDTSAVPDSSAIAYLHAQLQRWVRATPILEKTDFEPVAGI FT AVCFKFELLQASGTFKARGAFSHLLALDDAQRQAGATCVSAGNHAVAVAYAAMRLGLSA FT KVVMIKTASPARVALCRQYGAEVVLADDGPQAFETVRRIENEEGRYFVHPFNGYRTVLG FT TATLGHEWLQQAGELDAVIVPVGGGGLISGVATAIKLAAPQCQVIGVEPEGADAMHRSF FT AAGGPIRMGPMHSIADSLMAPHTEQYTYDLCRRHVDRLVKVDDHALRAAMRLLFDQLKL FT ATEPACAAATAALAGPLRNDLAGRRVGVLLCGTNTDPATFARHLGAD" FT misc_feature complement(1401913..1402785) FT /note="HMMPfam hit to PF00291, DE Pyridoxal-phosphate FT dependent enzyme, score 1e-58" FT CDS complement(1402985..1403788) FT /transl_table=11 FT /locus_tag="BB1314" FT /product="putative membrane protein" FT /protein_id="CAE31812.1" FT /translation="MASLQGGASLAKTLFPAVGAQGTAALRLGFSALILLPLLRPWRLR FT LDAAGWRVVVLYGLALGGMNLLFYLSLRTIPLGIAVALEFTGPLAVAVLASRRWHDFAW FT IGLAAGGLLLLIPHGAAAGPLDPTGVACALAAGACWALYIVFGQRAGLRHGTRTVALAA FT TVAAAAVLPFGLAHAGAALFSPAIIPLGLAVAILSSALPYALEMQVLTRLPARTFGTLL FT SLEPVFGALSGLLFLGETLNATQWLAVAAIVAASTGITVTGRRRG" FT misc_feature complement(join(1403000..1403068,1403078..1403137, FT 1403174..1403233,1403246..1403314,1403351..1403410, FT 1403423..1403482,1403501..1403569,1403579..1403647, FT 1403684..1403752)) FT /note="9 probable transmembrane helices predicted for FT BB1314 by TMHMM2.0 at aa 13-35, 48-70, 74-96, 103-122, FT 127-146, 159-181, 186-205, 218-237 and 241-263" FT misc_feature complement(1403006..1403377) FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 1.2e-17" FT CDS complement(1403900..1404325) FT /transl_table=11 FT /locus_tag="BB1315" FT /product="putative universal stress protein" FT /protein_id="CAE31813.1" FT /translation="MKQVLVPVDGSEHALAAVRAVLNAQLYPSLERVHLATAQVPLYPQ FT GVHMGLSQTEIDAYYREESEFALAGAQKLLEAAGVPYETHSELGQVAETLVDLAKRLDV FT DEIVMGSRGLGSISSVMLGSVATKVLHLAETPVTLVK" FT misc_feature complement(1403906..1404322) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00582, DE Universal stress protein FT family, score 6.3e-05" FT CDS 1404504..1405076 FT /transl_table=11 FT /locus_tag="BB1316" FT /product="putative chromate transporter" FT /protein_id="CAE31814.1" FT /translation="MTAVPTDSDASFLATPPSCGALFNGFFWLGVTAFGGALPLARSMM FT VERRRWLSPDEFTDLLGLCQFLPGGNIINMSVAVGMKFRGPRGAIAALLGLILAPSIIV FT ILLGMVYQRYEQDPRVEHLFTGLAAAAAGLLVSMALKIARPLRGKWAGIAVAAACFVAI FT ALLRLPLLPTMLVLTPLSIALTWRLRR" FT misc_feature 1404552..1405061 FT /note="HMMPfam hit to PF02417, DE Chromate transporter, FT score 5.9e-21" FT misc_feature join(1404561..1404629,1404768..1404836,1404864..1404932, FT 1404951..1405016) FT /note="4 probable transmembrane helices predicted for FT BB1316 by TMHMM2.0 at aa 20-42, 89-111, 121-143 and FT 150-171" FT CDS 1405073..1405594 FT /transl_table=11 FT /locus_tag="BB1317" FT /product="putative chromate transporter" FT /protein_id="CAE31815.1" FT /translation="MTDILLSLAGIFAQLSLLAFGGGNTILPEMQRQVVDVHHWMTAAD FT FSALFALGQAAPGPNLMVVTLVGWHVAGWQGVLVTTLAKFGPSSVVTVVALGLWERFKD FT QPWRGVVQAGIFPMTVGLMAASAALISHASVHGWLTAAIVAGVAAVATLTRVHPLWLLA FT AGALVGFVAL" FT misc_feature 1405073..1405135 FT /note="Signal peptide predicted for BB1317 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.943) with cleavage site FT probability 0.835 between residues 21 and 22" FT misc_feature 1405079..1405588 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02417, DE Chromate transporter, FT score 2.5e-09" FT misc_feature join(1405085..1405153,1405211..1405279,1405298..1405366, FT 1405394..1405462,1405481..1405549) FT /note="5 probable transmembrane helices predicted for FT BB1317 by TMHMM2.0 at aa 5-27, 47-69, 76-98, 108-130 and FT 137-159" FT misc_feature 1405124..1405168 FT /note="PS01036 Heat shock hsp70 proteins family signature FT 3." FT CDS complement(1405615..1406733) FT /transl_table=11 FT /locus_tag="BB1318" FT /product="conserved hypothetical protein" FT /protein_id="CAE31816.1" FT /translation="MNDLPTVQWAENGATRHALWRSESGAPAPRRIVAADDTLKADAAW FT RLACEGTAILWRGDFHNARQLLQAMGRRFDKRPAKPAASALEAFNQHRMRQGQRARTLG FT MLLLPVEPGHHVALRRAPDVGQACLEAYGPAAEPYLVSLRELLGLIGAAQWQQKGVPIA FT ALGARIHPRYGVFSPVRGEYVDLVANTPLPGGATAFDIGTGTGVLAAVLARRGLDVTAT FT DLDPRALACAADNLQRLGLGGRVRLLQADLFPPGRADLVVCNPPWLPARPSAPVEYAIY FT DPDSRMLTGFLAGLAAHLNPGGEGWLILSDLAEHLGLRSRDWLLAQVEQAGLRVAGRVD FT TRPVHPRASDPADPLHAARAAEVTSLWRLAAR" FT misc_feature complement(1405933..1405953) FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT CDS complement(1406870..1407118) FT /transl_table=11 FT /gene="fdsD" FT /locus_tag="BB1319" FT /product="putative NAD-dependent formate dehydrogenase FT delta subunit" FT /EC_number="1.2.1.2" FT /protein_id="CAE31817.1" FT /translation="MEIGNLIRMANRIGDFFDAYPDRAEAQANIATHIQKFWEPRMRTQ FT LLAFVAQHPDGDDGQARLNGIVLHAVRDARARLTPKA" FT CDS complement(1407130..1407960) FT /transl_table=11 FT /gene="fdhD" FT /gene_synonym="fdsC" FT /locus_tag="BB1320" FT /product="formate dehydrogenase associated protein" FT /protein_id="CAE31818.1" FT /translation="MDRLHTSSADWPDHLATQVVRVRGGVLQAAGQSDHVAEETPVALE FT FNGISHATMLVTPTHLDDFALGFALTEGIVGGMADVRGVELETRCDGIVVQVEIATSCE FT VRLKERRRAMAGRTGCGLCGVETLPEVVRDVAPVADSDALPVHNVLRAMQSLRSRQTLH FT DATGATHAAGWADASGEVVLAREDVGRHNALDKLIGALARQGIAPLPGMAVVSSRASFE FT MVQKTASAGIPILAAVSAPTALAIRLARQTNVTLLGFVRNTDATIYSHPQRIAA" FT misc_feature complement(1407145..1407876) FT /note="HMMPfam hit to PF02634, DE FdhD/NarQ family, score FT 8.6e-78" FT CDS complement(1407976..1410852) FT /transl_table=11 FT /gene="fdsA" FT /locus_tag="BB1321" FT /product="NAD-dependent formate dehydrogenase alpha FT subunit" FT /EC_number="1.2.1.2" FT /protein_id="CAE31819.1" FT /translation="MLETVIKRDRDLGTPARESAQLVTLTIDGQPVSVPAGTSVMRAAA FT EAGINIPKLCATDSLEPFGSCRLCLVQIEGRRGYPASCTTPVEAGMVVQTENARLRDLR FT RGVMELYISDHPLDCLTCPANGDCELQDMAGVVGLREVRYGYDGENHLAEAKDESNPYF FT TYDPSKCIVCNRCVRACEETQGTFALTISGKGFASRVSPGQDQPFMDSECVSCGACVQA FT CPTSTLQEKSIIMLGQAEHSVITTCAYCGVGCGFKAEMKGEEVVRMVPWKDGQANRGHS FT CVKGRFAWGYTTHKERVLKPMIRQRITDPWREVSWEEAIGHAASEFRRIQAAHGRDAIG FT GITSSRCTNEETWLVQKLVRAAFGTNNVDTCARVCHSPTGYGLKQTLGESAGTQTFDSV FT MHTDVVIVMGANPSSAHPVFASRLKRRLREGARLIVIDPRRIELVSAPHVKADFHLQVR FT PGTNVALLTAMAHVIVTEGLVAESFVAERCEAPSFDMWREFVARAENSPEAMQEVTGVP FT AQLVRGAARLYATGGNGSIYYGLGVTEHSQGSTTVMAIANLAMATGNIGREGVGVNPLR FT GQNNVQGSCDMGSFPHELPGYRHISDDAVRGEFERDWGVTLQPEPGLRIPNMFEAALGG FT SFLGLYCQGEDIVQSDPNTQHVAAALSAMECIVVQDLFLNETAKYAHVFLPGSSFLEKD FT GTFTNAERRISRVRKVMRPRNGMADWEITMALSNALDYPMHYAHPSEIMDEIARLTPTF FT AGVTYEKLDRLGSIQWPCNEDAPEGTPTMHIDEFVRGRGRFMLTKYVATDERSTRRYPL FT LLTTGRILSQYNVGAQTRRTPNVMWHGEDVLEIHPHDAQERGVADGDWVGIQSRAGETV FT LRATLTDRVQPGVVYTTFHFPESGANVVTTDNSDWATNCPEYKVTAVQVTRVSQPSEWQ FT RQWSRFADVQQKLLHERARETEPALANK" FT misc_feature complement(1408102..1408419) FT /note="HMMPfam hit to PF01568, DE Molydopterin dinucleotide FT binding domain, score 1.9e-28" FT misc_feature complement(1408432..1410135) FT /note="HMMPfam hit to PF00384, DE Molybdopterin FT oxidoreductase, score 1.4e-132" FT misc_feature complement(1410064..1410120) FT /note="PS00551 Prokaryotic molybdopterin oxidoreductases FT signature 1." FT misc_feature complement(1410166..1410237) FT /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain, FT score 0.00036" FT misc_feature complement(1410181..1410216) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature complement(1410295..1410366) FT /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain, FT score 0.043" FT misc_feature complement(1410310..1410345) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature complement(1410586..1410780) FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 1.9e-10" FT CDS complement(1410870..1412450) FT /transl_table=11 FT /gene="fdsB" FT /locus_tag="BB1322" FT /product="NAD-dependent formate dehydrogenase beta subunit" FT /EC_number="1.2.1.2" FT /protein_id="CAE31820.1" FT /translation="MNAPLTTPITVYVPRDAAALAMDADAVAQAIAQQAAALDLPVRIV FT RNGSRGMLWLEPLVEVATPAGRIAYGPVQPEDVAALFEAGWLDGGAHPLRLGLTDEIPY FT LKHQERLTFARVGVIDPLSLQDYAAHGGLAGLNRALAMSAEQIVDEVSASGLRGRGGAA FT FPTGIKWKTVLTTPAPRKYIVCNADEGDSGTFADRLLMEGDPYSLIEGMTIAGLAVGAT FT YGYIYVRSEYPHAIATLRQAIARAREVGWLGDDIHGSGQRFDLEVREGAGAYICGEETS FT LLESLEGKRGVVRAKPPLPAIAGLFGLPTVINNVISLATVPTIMARGAAHYRDFGVGRS FT HGTLPFQLAGNLKHGGLVEKAFGLTLRDLLYGFGGGSASGRPLRAVQVGGPLGAYLPES FT QWDVPLDYEAYVQISAMVGHGGLVAFDDTVDMARMARYAMEFCAIESCGKCTPCRIGST FT RGVETIDKIVAGGPQREQRVHLLRDLCDTMLAGSLCALGGMAPYPVLSALNHFPEDFGL FT APQPAAQPA" FT misc_feature complement(1411083..1411118) FT /note="PS00645 Respiratory-chain NADH dehydrogenase 51 Kd FT subunit signature 2." FT misc_feature complement(1411278..1412060) FT /note="HMMPfam hit to PF01512, DE Respiratory-chain NADH FT dehydrogenase 51 Kd subunit, score 7.2e-118" FT misc_feature complement(1411596..1411643) FT /note="PS00644 Respiratory-chain NADH dehydrogenase 51 Kd FT subunit signature 1." FT CDS complement(1412447..1413004) FT /transl_table=11 FT /gene="fdsG" FT /locus_tag="BB1323" FT /product="NAD-dependent formate dehydrogenase gamma FT subunit" FT /EC_number="1.2.1.2" FT /protein_id="CAE31821.1" FT /translation="MPAHPAKTDLASSAGARGGALAMESAEHSASPAIATTARLLAAMK FT DQPGALLPVLHAVQDELGFIPPEAVQTIAETLSLSRAEVHGVITFYPHFRSEPAGRHVL FT EICRAESCQAMGGDALAAHARQRLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQ FT PHARVTPAKLDRLLARAIEATP" FT misc_feature complement(1412462..1412902) FT /note="HMMPfam hit to PF01257, DE Respiratory-chain NADH FT dehydrogenase 24 Kd subunit, score 1.1e-25" FT CDS 1413154..1414260 FT /transl_table=11 FT /locus_tag="BB1324" FT /product="putative molybdenum-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2705" FT /protein_id="CAE31822.1" FT /translation="MTYKFRIGLRPQWVLEGGEGAAGQPLQDMLALLAAIDDSGNIAGA FT CKTCGLSYRHAWGVLRRFEALFGTPLLVTRRRLGTALSPFAQRLLWANRRIDARLMPTL FT ESLASELQEELERLLPESGPHLRLHASHGFAVEALMQHLDTRLPGVELRYRTAAEALAS FT LRGNDCDLAGFQVPQGEFEAPILRLYAQWLDPDEHLLIHLAVRNTGLFVVAGNPKGIGG FT VADLARADVRFVNRQAGSSTYYLVNLMLQRAGVAPAAVQGYQNNEFTHMAVAAHIASGM FT ADTGIGVETAARRFGLDFIPLVRERYFFAIRKTALESAAMRALLEGMRSPEYRGFVGQL FT PGYDASDTGAIQTLEQAFARDFRPRAAL" FT misc_feature 1413181..1413483 FT /note="HMMPfam hit to PF02573, DE N-terminal HTH domain of FT molybdenum-binding protein, score 8.4e-06" FT CDS 1414271..1415368 FT /transl_table=11 FT /gene="moaA" FT /locus_tag="BB1325" FT /product="molybdenum cofactor biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2706" FT /protein_id="CAE31823.1" FT /translation="MSKVIFLTDRRQADLAAPSADLPPAGEPARDVRARPLRDLRISVT FT DRCNFRCTYCMPREVFDSSYAFMPHSALLSFEEIARLAAQFARLGVEKIRLTGGEPLLR FT KNIETLVGMLAELRTPAGRPLDLTLTTNGSLLARKAAALKQAGLSRVTVSLDALDAALF FT ARMSDSNFSPDDVLRGIDAAAEAGLAPVKVNMVVRRGLNDGEILPMARRFRGSGHILRF FT IEYMDVGSTNGWNLSEVVPSDEVLARIAEHHPLAPLDTPVMGRVAERWRYDDGGGEIGV FT ISSVTHAFCSGCTRARLSPEGRLFLCLFASHGHDLRAPLREGADDDSLARILTGIWGQR FT DDNYSERRGQGGGAADRIEMSYIGG" FT misc_feature 1414400..1414435 FT /note="PS01305 moaA / nifB / pqqE family signature." FT misc_feature 1414520..1415182 FT /note="HMMPfam hit to PF01444, , score 4.9e-60" FT CDS complement(1415556..1416761) FT /transl_table=11 FT /gene="moeA" FT /locus_tag="BB1326" FT /product="molybdopterin cofactor biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2707" FT /protein_id="CAE31824.1" FT /translation="MLEFDQAQQLLAQAGAPVAGTEHVALEQADGRVLATDLAATVDLP FT PADNSAMDGYAIRLADYQAGARMPVQQRAYAGDMPQALIPGQATRLFTGSLIPAGADTV FT VMQEDAREADGQVEITQAPTLGQWIRKRGDGTTAGRPLLDAGTLLHAGHVGLLGTQGLA FT SVPVRARLRIGVLTTGDELVAPGQPRAAQQIYNSNGPMLAALVRGMGAQVSHVLHARDD FT EDALRAALRTLLADSDLVLSSGGVSVGERDLVKPVLEALGGELGLWKVRMKPGKPVALA FT HIDGKPVVCLPGNPVSSYAVFALLVSPLVRRMQGRAELYPAVSRLPLRTERPRQDSREE FT FLRVQWRATEDGAGELQPFGNQDSAIITSVPWSTGLARLPAGVPVNDGERVGYYDLRHW FT LA" FT misc_feature complement(1415571..1415789) FT /note="HMMPfam hit to PF03454, DE MoeA C-terminal region FT (domain IV), score 5.3e-09" FT misc_feature complement(1415838..1416254) FT /note="HMMPfam hit to PF00994, DE Probable molybdopterin FT binding domain, score 1.5e-56" FT misc_feature complement(1415919..1416023) FT /note="PS01079 Molybdenum cofactor biosynthesis proteins FT signature 2." FT misc_feature complement(1416279..1416761) FT /note="HMMPfam hit to PF03453, DE MoeA N-terminal region FT (domain I and II), score 4e-50" FT CDS complement(1416768..1417289) FT /transl_table=11 FT /gene="moaB" FT /locus_tag="BB1327" FT /product="molybdenum cofactor biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2708" FT /protein_id="CAE31825.1" FT /translation="MNDAKQVSLACAILTVSDSRSAGDDTSGNMLAESLAHAGHMCVRR FT DLVKKDLYQIRRVISEWIADPAVQVILVSGGTGFTPRDCTAQAIEPLFDKTIEGFGELF FT RQLSYEEIGSSAVQSSALAGTANDTVIFCMPGSNHACKLGWNRIIREQLDDAHKPCNFA FT MHYRAKPDAD" FT misc_feature complement(1416837..1417268) FT /note="HMMPfam hit to PF00994, DE Probable molybdopterin FT binding domain, score 1.1e-42" FT misc_feature complement(1417224..1417289) FT /note="Signal peptide predicted for BB1327 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.699) with cleavage site FT probability 0.357 between residues 22 and 23" FT CDS complement(1417286..1417777) FT /transl_table=11 FT /gene="moaE" FT /locus_tag="BB1328" FT /product="molybdopterin converting factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2709" FT /protein_id="CAE31826.1" FT /translation="MNIMVIVQEADFDGAALLAALRERVGGQAGAIVTFVGYVRDFAPE FT QATETLYLDHYPGMCERELETIAATARERWDLAGTVIAHRVGALPRGAQIVFVAAASAH FT RGDAFRGCEYIIDALKTRAPFWKRETLAAGDSFWVEQRQSDADRTQSWDDPDTPTKEHP FT " FT misc_feature complement(1417409..1417774) FT /note="HMMPfam hit to PF02391, DE MoaE protein, score FT 3.6e-32" FT CDS complement(1417774..1418025) FT /transl_table=11 FT /gene="moaD" FT /locus_tag="BB1329" FT /product="molybdopterin converting factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2710" FT /protein_id="CAE31827.1" FT /translation="MSGATIKVLYFARVAELVGKRTEDWPLAETVTGAQLLAALAARYP FT QLEPAERLKLAVNQTHVKVGAAVRPGDEVAVFEPVTGG" FT misc_feature complement(1417780..1417962) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02597, DE ThiS family, score FT 1.1e-07" FT CDS complement(1418006..1418491) FT /transl_table=11 FT /gene="moaC" FT /locus_tag="BB1330" FT /product="molybdenum cofactor biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2711" FT /protein_id="CAE31828.1" FT /translation="MSTTPTLSHLDESGQIRMVDVGHKTDTDRVAIARGSVRMNATAYG FT LLTQPGQGKGEVLNTARVAAVLAAKRCAELIPLCHSLPLAFVGIDFELDEAAHSVHIRA FT TCRTQYKTGVEMEAMTACSVAALTIYDMCKAADKGIVIEQIRLQYKAGGKSGEWRND" FT misc_feature complement(1418033..1418440) FT /note="HMMPfam hit to PF01967, DE MoaC family, score FT 2.1e-74" FT CDS 1418627..1422076 FT /transl_table=11 FT /locus_tag="BB1331" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2712" FT /protein_id="CAE31829.1" FT /translation="MPVRMPGVRLTRRTVKVLLATVLVVLLLAGLAAWQVPRIVRGALT FT QDVSAMLGRDVSVGKIRFNPFTLTLRAHDLALAQPEGAAPLLQVAELDVSASWMSLFWF FT APVVDSLVVRQPRIALVREDVTRFNFSDIQQKVADMTAQSPPEPEPEAGPPRFSLNNMV FT LEGGEITLDDKVSGRQQRIDEIALGVPFISTFGYATDIDVQPRVHMRINGSPFDLTGVA FT RPFDTVPSSTLDVSFAGLELEKWADAWPLPLPVKLERALLDSDLQVLFEQPKDAAPRIK FT VVGELGLRQLDVRESSGDVLAQWSALAVRRIAFEPMQRSLYVGEVELWSPQIQTRRYAD FT QRLNWLDIAQKLQKLGAGDAPAKPAAAPAPTPAPAPAPAQASASATPAAAQAAAAPQAS FT AAAAAPDAWHVVVDAINVRDAELHLRDAVTKLDYVMNGVGATVEGLELPQPPDRPIGLW FT LTMDSTIDGSWLRAKGPLTLEPLNLDVKVELDRLALARLAPAVRASAPILVEDGRLGAQ FT ARVRVAQRDGATQVVAEGAALRLSDLSLRDESVKPAVPVSVKQFEARFDRLAPDAQPSP FT FTLKADGVQGEGALAMQGSLTAQPLALKSSVDLARLDLAPFAPYIASSLNATVRAINLS FT ARGDAEFAAAAGATPMKAAWRGALDVNDLDLADRVNRDDFMQWKRLGLAGMQVSVNGDA FT FAANLGDITLDDFYGRVLLNAEGRLNVMDLVAEPGQAGGSITQDTQTRARAAAPAKPGP FT MPDIAIGSVTLKGGKMTFTDRFVKPNYTAELSRIEGSVSAVSSRQPKPAKVNVAGRVYT FT SAPFSISGTVQPFAQFLSLDLKASAKGVDLPRFTTYSAKYVGYPIKRGKLSLDVQYQIK FT DRALQASNRVVLNQLTFGDKTDSPDAVKLPVLLAVALLKDSRGNIDINLPISGSLDDPQ FT FSVGGIIVRVLVNLVVKAVTSPFTLLASAFGGGEELSYIEFDPGSAALTPEAESRIETL FT AKALNDRPGLKLDVAGRADPASDEEGLRQAWVERQIRLAKARDTAGRGKKPAPDGVEVA FT PAERAKYLEEVYDDTKIEGKPRNFIGMAKSIPAEQMEALLRGAAPLGADDLRKLADARA FT QAVYEKLQAEGPADRIFVVAPQLDADGIKDDGKPTRVDFSLK" FT misc_feature 1418627..1418722 FT /note="Signal peptide predicted for BB1331 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.525 between residues 32 and 33" FT CDS 1422073..1422978 FT /transl_table=11 FT /locus_tag="BB1332" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2713" FT /protein_id="CAE31830.1" FT /translation="MTHRRFPMTDADPHFDSLLPPLTLTRRGFVVTSLAAGFSLAAGAA FT AAQSAIHTDAAGLTAGKVDIPTPDGKMPAYRAAPAGKKDLPTLLVVSEIFGVHEYIQDV FT CRRLARLGYQAVAPELFARYGDPTGYTDIGRLRAEVVDKAGDRQVLADLDAAAAWAAAN FT GGNSSRLGILGFCWGGRIVWLYAAHNPGLKAGAAWYGQLGGQASELKPRSVLESIGDLK FT APVLGAYGGKDAGIPLSDVDRMRLALAKGPRAARDSRIDVYPEAPHAFHADYRPSYRKA FT EAEQAWQRMLDWFGQHGLAA" FT misc_feature 1422073..1422213 FT /note="Signal peptide predicted for BB1332 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.936) with cleavage site FT probability 0.596 between residues 47 and 48" FT misc_feature 1422286..1422966 FT /note="HMMPfam hit to PF01738, DE Dienelactone hydrolase FT family, score 2.2e-70" FT CDS complement(1422988..1423419) FT /transl_table=11 FT /locus_tag="BB1333" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2714" FT /protein_id="CAE31831.1" FT /translation="MTRHFLAALLLAAASGAACAQAGADPAGQAIFDQIVLTSGAANGA FT ARTCGASAPDLAQHAETWRLNLRRYADEYHYAFDSFDERYARGQQEGAEMMADMRASGV FT DGCTGALASFQRERTMTYDEMKQAIAEATDGLPEDQPAD" FT misc_feature complement(1423360..1423419) FT /note="Signal peptide predicted for BB1333 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.431 between residues 20 and 21" FT misc_feature complement(1423363..1423395) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1423658..1424161 FT /transl_table=11 FT /locus_tag="BB1334" FT /product="AhpC/TSA-family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2715" FT /protein_id="CAE31832.1" FT /translation="MTIKVGDRVPDGTLTEFIETETAGCTLGPNAFQVADLVKGKKIAL FT FAVPGAFTPTCSAKHLPGYVEQAAALRAKGIDEIWCVAVNDAFVMGAWGREQQAGGKVR FT MLADGSALWTTALGLELDLVQRGMGVRSQRYSALIDDGVVKQLNIEAPGKFEVSDAATM FT LAQA" FT misc_feature 1423670..1424152 FT /note="HMMPfam hit to PF00578, DE AhpC/TSA family, score FT 1.7e-06" FT CDS 1424173..1425639 FT /transl_table=11 FT /locus_tag="BB1335" FT /product="putative membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2716" FT /protein_id="CAE31833.1" FT /translation="MLYAAGHRGPRPVLPQADIRVPMLTTISSFSSLYFATLLMLIGTG FT LFNTYMGLRLTAQSVNEIWIGALIAGYYLGLVCGARLGHRLIIRVGHIRAFVACAAVAT FT SMILAQALVDHLPLWLLLRLISGIVMVTEFMVIESWLNEQTENHQRGRVFSVYMVVSGL FT GTVLGQLALTAYATLDDGPLTLVAMCLVLCLVPIAVTARSHPPTPLPAPLDLRFFASRV FT PLSLTVLFVAGNLSGAFYGLAAVYAAKHGLSTSQSAIFVAAAVTAGLLSQWPMGWLSDR FT INRAGLIRFNAAVLVLLPVLMWGWIVLPYWAMVALSCVFGVLQFTLYPLGAAFANDHVE FT PERRVGLSAILLMTYGVGACLGPLIAGVMMSLGGPGMYYVFISACAVILVWQVRPARVT FT GAHQVDEAPVHFVPMPDTLQSSPAAVALDPRVDPDVDITMEMADPGPDVVEPPAPAGPP FT APGADSESTSAPQAGEQAAPDDAAARRTGT" FT misc_feature join(1424233..1424301,1424359..1424421,1424440..1424499, FT 1424527..1424595,1424632..1424700,1424713..1424781, FT 1424842..1424910,1424938..1425006,1425025..1425093, FT 1425103..1425171,1425205..1425273,1425283..1425351) FT /note="12 probable transmembrane helices predicted for FT BB1335 by TMHMM2.0 at aa 21-43, 63-83, 90-109, 119-141, FT 154-176, 181-203, 224-246, 256-278, 285-307, 311-333, FT 345-367 and 371-393" FT misc_feature 1424242..1425405 FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.0019" FT CDS complement(1425753..1426628) FT /transl_table=11 FT /locus_tag="BB1336" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2717" FT /protein_id="CAE31834.1" FT /translation="MNQGLLYLAASVACSVTVAVLLKLARRHAIDVRQAIAVNYAVAAA FT LCWLLLRPDAQALRQAMQGAPVLAALAVLLPTVFVAMARSVRHAGIVKSDAAQRLSLFI FT PLLAAFALFGESLTARKLAAIALAFAALACLLRRRAPAGAAADDAPDDRRAAWMWPLAV FT WAGYGVIDILFKQLARSGTAFSAGLLATFVAAGLLTLAYLCIRRTRWQARHALAGVALG FT LANFGNILTYVRAHQSLPDHPALVFGAMNMGVITAGTLVGALAFRERLSALNLAGLALA FT LAAIAAMLPW" FT misc_feature complement(join(1425759..1425812,1425831..1425899, FT 1425927..1425995,1426014..1426082,1426110..1426163, FT 1426221..1426265,1426275..1426334,1426371..1426430, FT 1426473..1426526,1426563..1426616)) FT /note="10 probable transmembrane helices predicted for FT BB1336 by TMHMM2.0 at aa 5-22, 35-52, 67-86, 99-118, FT 122-136, 156-173, 183-205, 212-234, 244-266 and 273-290" FT misc_feature complement(1426572..1426628) FT /note="Signal peptide predicted for BB1336 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.931) with cleavage site FT probability 0.709 between residues 19 and 20" FT misc_feature complement(1426587..1426619) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(1426625..1427632) FT /transl_table=11 FT /locus_tag="BB1337" FT /product="biotin synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2718" FT /protein_id="CAE31835.1" FT /translation="MHTAYIPVPTPVRPPSAERWPLAAVAELFELPFLDLLHRAQQVHR FT QHFDANTVQLSSLLSIKTGGCPEDCAYCPQSAHYDTGVDADKLMPLDEVVRAARAAQAN FT GAQRFCMGAAWRSPKPHHLEAVAEMIGAVKALGMETCVTLGMLRDGQAEQLKAAGLDYY FT NHNLDTAPEFYGKIISTRTYQDRLDTLQQVREAGINVCCGGIVGMGESRRDRAGLVAQL FT ANMEPYPESVPINNLVQVEGTPLAGAETLDPFEFIRTIAVARITMPLAKVRLSAGRETM FT SDSEQALCFMAGANSIFYGDVLLTTGNPQVEADRRLLQRLGMRAEGLPCAAGQA" FT misc_feature complement(1426661..1427581) FT /note="HMMPfam hit to PF01792, , score 3.9e-184" FT CDS 1428101..1428406 FT /transl_table=11 FT /locus_tag="BB1338" FT /product="putative exported protein" FT /protein_id="CAE31836.1" FT /translation="MNRIATALILSASVFGVAQAGELDYPPAIESASALSHAQVQDELL FT AARAAGQMNSAELAYPPVVEQAATQVSRSQIRQELSAAKARGLDASGELDYPPVAG" FT misc_feature 1428101..1428160 FT /note="Signal peptide predicted for BB1338 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 20 and 21" FT CDS 1428470..1428775 FT /transl_table=11 FT /locus_tag="BB1339" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2719" FT /protein_id="CAE31837.1" FT /translation="MNRIATALILSASVFGVAQAGELDYPPAIESANTLSHAQVQAELQ FT AARTQGLMAAGEQDYPITAYAAVSTVSREQVRDELAAARAQGLTESGELAYPPVAG" FT misc_feature 1428470..1428529 FT /note="Signal peptide predicted for BB1339 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 20 and 21" FT CDS 1428902..1429492 FT /transl_table=11 FT /locus_tag="BB1340" FT /product="putative TetR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2720" FT /protein_id="CAE31838.1" FT /translation="MDTPSTNTTRDQLLDYAQKLIRTRGCNGFSYRDLADHVGVKTSSV FT HYYFPCKDDLLYEAVENYTGSALETLRGISPTLPAKERLDAYIAMVESHSCQADQLCLG FT GMLAAELNTLPERVRAALQAFFTVEENWLAKVLADGAREGTLRYASTPEKAARALFATV FT QGCLLGARLFQRPPDLREALGALYVQCGASPAH" FT misc_feature 1428938..1429078 FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 3.5e-05" FT misc_feature 1428986..1429051 FT /note="Predicted helix-turn-helix motif with score FT 1755.000, SD 5.16 at aa 29-50, sequence FT FSYRDLADHVGVKTSSVHYYFP" FT tRNA complement(1429736..1429812) FT /note="tRNA Asp anticodon GTC, Cove score 95.07" FT tRNA complement(1429848..1429923) FT /note="tRNA Glu anticodon TTC, Cove score 60.10" FT tRNA complement(1429950..1430025) FT /note="tRNA Ala anticodon GGC, Cove score 86.46" FT CDS complement(1430145..1431038) FT /transl_table=11 FT /locus_tag="BB1341" FT /product="carboxyvinyl-carboxyphosphonate phosphorylmutase" FT /EC_number="2.7.8.23" FT /protein_id="CAE31839.1" FT /translation="MSSAAKKFRDLLNSAEFIVSPGVYDGYSLRLVQAAGFKTACTSGA FT ALSNALLGIADIGVMGLMENVNHCRMLARSVDIPLTADADTGYGNPVNVFHTVQMFEEA FT GVAGVNLEDQVSPKRCGHMPGKDVIPLEEMVKKIEAACLARRDDNFVIIARTDALAVEG FT IEGAARRAQAYAAAGADVIFPDAVRTAEDIGRIVEAAGVPVSVNMGFGVRQRPTTPLIP FT LPELKRLGVKRISLPRMLPAAAIHGMRSALEEMKQVIATGTPAHRPDLLVGIEDIMELM FT GYEAMRALEKKLTTLD" FT misc_feature complement(1430670..1430687) FT /note="PS00161 Isocitrate lyase signature." FT CDS 1431238..1433922 FT /transl_table=11 FT /gene="acnA" FT /gene_synonym="acn" FT /locus_tag="BB1342" FT /product="aconitate hydratase" FT /EC_number="4.2.1.3" FT /protein_id="CAE31840.1" FT /translation="MLSRMTNRGYMNASFLHLGTPIHYADVAAAAARSGVELASLPYVI FT RILLENLLRHRGRGRPVQEAEIEAVAHWQAHISEQISLHVERVILPDSSGLPVLQDLAA FT LRDAVQAGGGDPARVDTRVPVDLIVDHSLQVDAWSTADAVRRNLDAEFARNEQRYRFLK FT WAQQAFDGLRVFAPGTGIIHQVNLEKLATVVSTSEHGGQQWACPDFVIGGDSHTPMVNG FT LGVLGWGVGGIDAESALLGRAYTFPIPEVVGVELKGAFRSPVTTTDAALLVTQRLRAEG FT VTGCMVEFFGEALPGLSVADRATIANMAPEYGATCGFFPVDAQTLDYLRLTGRTAEHIE FT LVRAYCQANGLWRADPAASAVRYARVVRIDLAQAEPCMSGPRRPQDRLPIGQLAEDFRQ FT RLPRPAAEGGFGLDAAALARAPGSAGLRHGSIVVAALTSCTNTSNPSVMLTAALVARAA FT RQRGIAPPAWVKRSLAPGSRTVTDYLAATGLLQDLEALGFGVIGYGCTTCGGKSGPLAP FT EVAQDIADNQWVVCTVLSGNRNFEGRIHKLARANYIGSPPLVVAYALAGRIDIDFSREP FT IATDADGQPVWLHELWPGEAQLDEIMARALSPQGFRRVWGLEPEGASQWRALAEVSGQH FT WQWDDSNYLVEPPFFKAPAQQFGQRLAGARVLGLYGDSLTTDHISPSGEIPAEAPAGRY FT LLGLGVAQRDFNTYVARRSNFEVMTRATFGNIRIRNLLVPGTEGGYTRHFPSGEQLSIY FT DASRRYMAAGTPTIVLAGEEYGTGSSRDWAAKGTALLGVRAVLAKSYERIHRANLVGMG FT VIPFQFERGQGWRELGLDGSETFEFFDVLDGIRQGRPVRVAASRDDGMRVEFSVMPQAL FT TESERELLLQGGIPASVLADYLQ" FT misc_feature 1431418..1432935 FT /note="HMMPfam hit to PF00330, DE Aconitase family FT (aconitate hydratase), score 1.4e-169" FT misc_feature 1432528..1432578 FT /note="PS00450 Aconitase family signature 1." FT misc_feature 1433308..1433829 FT /note="HMMPfam hit to PF00694, DE Aconitase C-terminal FT domain, score 4.1e-54" FT CDS 1433947..1435320 FT /transl_table=11 FT /locus_tag="BB1343" FT /product="dihydroorotase-like protein" FT /EC_number="3.5.2.5" FT /protein_id="CAE31841.1" FT /translation="MARPLDTLLANTLVFLEGQGLVPGSIGIADGRIAVIGSHGQDMPA FT ARETIDCQGLWTLPGVIDPHVHFGFGSPETDFETESRNAALGGTTSVISFHRSADIRES FT FDAVRARAESQSCIDFGFHFGITSRLHVDTLDEISRRFGVSSYKLYMMYKGAAGLSKGF FT TDIDDGLLWGALNATRAIPGAVLGVHCENVEVIPWLRDPLRAAGRDDLAAWNEQSPDFL FT EAENVHRVCYFAGKTGTPVNIVHLSSREALREVRRHRHEGRAAPIYVETCPHYLFLDDR FT SPAGTYAKVNPPVRSAADIDAMWEGVCDGAITTIGSDHVPRKRATKDKDIWAASNGFPG FT TGMILPILLHEGYHRRQVPLETLMRVASGASARIYGMSAKGRIAVGNDADLVIVDPDLE FT KTVDPGELESHADYSPYEGMRLKGWPVRTLVRGRTVARDGRIADEARQTPGGRYLRRL" FT misc_feature 1434088..1435251 FT /note="HMMPfam hit to PF00744, DE Dihydroorotase-like, FT score 1.4e-46" FT CDS 1435354..1436073 FT /transl_table=11 FT /locus_tag="BB1344" FT /product="probable hydrolase" FT /protein_id="CAE31842.1" FT /translation="MSETKRIWDAFLTERDKEVYKAAGYGKRGGFGKRPALFIIDVQYN FT FCGDKPEDILEGLKQYRTHCGAEAWDAVKHIVPLLELAREKNLPVFYTESGRRNDLLDS FT GVQVGKNHRGGEKTVLANTHATRTVEELAPLPQDIRIVKQKPSCFFGTIFMSHLNFFDV FT DTLILVGCTTSGCLRATTVDAYSYNFKVIIPEEASFDRFQSSHAMSLFDLNCKYADVIP FT TAEVADYLKALPAREAG" FT misc_feature 1435450..1436037 FT /note="HMMPfam hit to PF00857, DE Isochorismatase family, FT score 3e-06" FT CDS 1436084..1437085 FT /transl_table=11 FT /locus_tag="BB1345" FT /product="conserved hypothetical protein" FT /protein_id="CAE31843.1" FT /translation="MSTIPITLLTGFLGSGKTSLLRRLIHQPGFARCAVIINEFGEVGL FT DQALVADQSDDRDIQLLDSGCLCCLASSAIQDTLASLYYRRLRGEIPWFDRVLIETSGL FT AEPGPIINAVYGDGALARQFRFAGIVTTFDAGFGQVDVQAYAEAKTQLLMADTVVLTKL FT DLHPEARHLAAWLGELNPTARVYENSLPDDTLARLLLDPVADRPAPVAQGHPSAGAPQA FT SALRHLLAYGIHSVTVDVPDAIGWPAWAAFVHEVQRTFADRLLRLKGVLAFEGQGRMAV FT HAVHHVFSAPEPAGAVPPALVGKLVFIVRDMEREEVLHAVRHLSGAPPADAA" FT misc_feature 1436090..1437049 FT /note="HMMPfam hit to PF02492, DE Cobalamin synthesis FT protein/P47K, score 2.8e-44" FT misc_feature 1436114..1436137 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1437223..1438242 FT /transl_table=11 FT /locus_tag="BB1346" FT /product="putative exported protein" FT /protein_id="CAE31844.1" FT /translation="MNFFNFGFQPGAAHTRRRVTATVLALAAWAALPAQQAAAQPQWPQ FT RPVTLIVPFAPGGPTDITARVLGEALGKEWKQTVVIENRAGAGGTVGAGFAAKAAPDGY FT TLLLGVTGSHGIAGSLYPSLTYDPKGDFEAISKVVFYPNAIIANPDVPANNLQELIALA FT KKDPKYQVYGTDGNGTASHLTMELLRERGGFPMQAVQYKGASPLINDIVAGFVPVGITG FT FPSAEPQVKAGKLKLIALTTDKDYSGNGYPTIAGQGFPGFAAAPWSGIFAPKGTPAPVV FT QKIAADIKTVMASPAVVEKMQKLGLTPSAVTLADFEAELDRERASWATAVKISGAKVQ" FT misc_feature 1437223..1437339 FT /note="Signal peptide predicted for BB1346 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.866 between residues 39 and 40" FT misc_feature 1437409..1438230 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.6e-64" FT CDS 1438261..1439646 FT /transl_table=11 FT /locus_tag="BB1347" FT /product="putative fumarate reductase flavoprotein subunit" FT /EC_number="1.3.99.1" FT /protein_id="CAE31845.1" FT /translation="MEFDMEFDVVIVGAGGCGLTAAVAIHDAYPQASIAVLDKAERACG FT NTVLSSGSIPAAGTRFQEAAGVHDTPRMFQEDLLTIAGEHEAMDLTRALTETSARLVEW FT LVDSAHVRLTLVETYKHIGHRVHRLHSPPSRRGADLVDDLLRECERRDIPVAWSNAVTS FT LIASEGRPRGVECATPDGAVTRVGARHVVLASNGYAANKSLLARFVPEVAAAPYGGGTG FT SEGEAILWGESLGAGLANMKAYQGHASLADPHGSLVTWTVIEKGGIIVDRSGQRFGDES FT IGYSAFAALELARTGPFWVIADTQVRDVTAAGQEEYAELVAHGGVLEGCLEELCARTGI FT DAAGLAATLQAARQCAADGGADAHGRAQWGLGPLGERLTATRIGPAIFHTQGGLRVDID FT GRVLTDQAGVIDGLWAGGGAACGISGNRGSLGYMSGNGLLSALGLGLRIGQAIASRLGE FT EQA" FT CDS 1439643..1441019 FT /transl_table=11 FT /locus_tag="BB1348" FT /product="putative exported protein" FT /protein_id="CAE31846.1" FT /translation="MTHDFKGSLMAGATPTRALADWCAALRDSRPSEAVLRESARHVLD FT TLAACAAGMRQPLVRAAIELERGINAQPGPVALFGGPERWTVLESAGLMAVACHALEMD FT DGNREGSIHPATTVVPAVLALGWQQEADYLAFLCAVVAGFEVAVSIAETLHPHASQRGF FT QTTPVAGVVGAAAACATLLGLDGAGIESAMGLAASASGGLFAYLAGGGNVKKFHPGHAA FT REGLRAALMARQGVAQGPRGVIEGRAGLLQAFGGITQWDGSRARERAAPAIARSYLKPY FT PCCRHIHPAIDAVMALKARAAWQAADVAAIEVETYGAAMPHARLPWDTLEVAQLSFPWV FT MALACVDGEVTLAGFSEAARTRPDINALAARVSVAQTQECDSLYPASGPARVTLRLRSG FT ERLSEWVADPLGSADRPLADEALDRKAAEAFGLAFPAARVRALIGQLRRLESWPLAELN FT " FT misc_feature 1439643..1439702 FT /note="Signal peptide predicted for BB1348 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.628) with cleavage site FT probability 0.603 between residues 20 and 21" FT misc_feature 1439679..1441013 FT /note="HMMPfam hit to PF03972, DE MmgE/PrpD family, score FT 1e-60" FT CDS 1441088..1442083 FT /transl_table=11 FT /locus_tag="BB1349" FT /product="putative exported protein" FT /protein_id="CAE31847.1" FT /translation="MSRKFLSALRNAGMCGAMMLGGLSAAPAAAADAWPGQPIRMVVPF FT APGGAVDTLGRLVAKQLTDVLGQTVVVENKPGAGGNIGSNIVAKAAPDGYTLLFGAAGN FT ITINPSLFDNMPYDVEKDLAPAALAGQSMNVLVVPAALPVDSVAELIDYARKHPDKLNY FT GSSGNGGTTHLAGELFNAMAGTRITHVPYQGSGPAMIDLLAGRVQLMFDNLPSAMPHIQ FT RGDLKALGVTGAMRSPQLPDVPTIAETGLAGFEATTWFGVFAPAGTPQAVLERLNGAVN FT QVMQSAPVEQKLQSMAAYFQPTTRAQFQTLIHDDTAKWARVIKAAGIKLN" FT misc_feature 1441088..1441177 FT /note="Signal peptide predicted for BB1349 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.979 between residues 30 and 31" FT misc_feature 1441247..1442071 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 7.2e-123" FT CDS complement(1442114..1443499) FT /transl_table=11 FT /locus_tag="BB1350" FT /product="conserved hypothetical protein" FT /protein_id="CAE31848.1" FT /translation="MNPALPATPSDRFAAGLAEVCQFVSTLSWDAIPDAVRQRAVDVLC FT DDLAAMAAAAPEPELRRYAALLTARAGTAESPLLSPALPRVGRMEAASWNALAGNWCEL FT DEGFRLAICHAGIYTLPALLAEATATRARLRDVLTALTGAYELVTRCAMSFHVMPPPVH FT GHALWSAVGAAAAVSLLRGHDAQTLLRAVSGAITTASMGPRSHLMAGVLIRNGWAAAGA FT VNGMQCADWAECGFGGAPASMEEVCAGIVKASLREGEITRELGTRWSLSHGYQKLYSCC FT QHGHSAVQACLALRADPGFEPQRIRAIRLDTHALALTLDTVHPTTTLGARFSMPHMVAA FT ALALGTGSAAAFSQSTLSDPAVAALREKVRMRLADAPMPAPHDRPAWIEVELDDGQVLR FT ASCLSATGSPDNPVTPAQFEDKLARLGADVLPRLPQAIAPAAWQAALDEETGAWLAALA FT RQA" FT misc_feature complement(1442132..1443469) FT /note="HMMPfam hit to PF03972, DE MmgE/PrpD family, score FT 5.4e-26" FT CDS complement(1443496..1444194) FT /transl_table=11 FT /locus_tag="BB1351" FT /product="probable GntR-family transcriptional regulator" FT /protein_id="CAE31849.1" FT /translation="MKEKPITAIDKNGIDAPLTDVVYQRMLDGIYAGGLPPGGVINEVE FT LAREFGVSRGPVREAVRRLQGIQIVTREPYMKARVVAMSAESALELFQMRMGLEGVACF FT LATQRMSDADIAQLQRDMDAHYQSWAARREGAPNGEERHFDLHERIVRASGNKRIIAAL FT CEDLYHLLRIYRRHSGSALERKDDAYDEHWQIVRAIASRDARLAESLMRSHIERAANHV FT ASQLREPAIQ" FT misc_feature complement(1443952..1444131) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 0.00065" FT misc_feature complement(1444003..1444077) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT misc_feature complement(1444009..1444074) FT /note="Predicted helix-turn-helix motif with score FT 1275.000, SD 3.53 at aa 41-62, sequence FT INEVELAREFGVSRGPVREAVR" FT tRNA complement(1444508..1444584) FT /note="tRNA Asp anticodon GTC, Cove score 95.07" FT tRNA complement(1444620..1444695) FT /note="tRNA Glu anticodon TTC, Cove score 60.10" FT tRNA complement(1444727..1444802) FT /note="tRNA Ala anticodon GGC, Cove score 86.46" FT CDS 1445104..1446111 FT /transl_table=11 FT /locus_tag="BB1352" FT /product="putative aldo/keto reductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1036" FT /protein_id="CAE31850.1" FT /translation="MRITRVGFGAWAIGGPGWSVGWGAQDDGESIRAIRHAVNRGINWI FT DTAAVYGLGHSESLVGRALAGMPPSERPYVFTKGGLVGSPADPMAKPRRIGAPDSLRRE FT VEASLRRLGVEAIDLYQMHWPAGDGTPLEVYWQALLDLRQAGKVRHVGLSNHNLAQVQA FT AEQLGHVETLQPPFSAIRRESAADLLPWCASHDTGVIVYSPMQSGLLSGAFSAERAAAL FT PEGDWRARNAEFMAPRLAANLEFADALKPIAQRHGASVGAIAVAWALAWPGVTGAIAGA FT RSAEQVDGWLGAATLELDSDDMRQIADALARTGVGGGPLLPPPDEAALALTARP" FT misc_feature 1445113..1446042 FT /note="HMMPfam hit to PF00248, DE Aldo/keto reductase FT family, score 8.5e-49" FT CDS complement(1446108..1447751) FT /transl_table=11 FT /gene="lnt" FT /gene_synonym="cutE" FT /locus_tag="BB1353" FT /product="putative apolipoprotein N-acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1037" FT /protein_id="CAE31851.1" FT /translation="MSPAGKGPAWRQPAILAAAGAAHALSFAPDPLPAWSLAPVQVIAL FT AVAAHASLQAPSARRALARGWLFAMFSFSLGLYWLYVSMHDYGGLAAPLAAAGVLALSA FT FLALFPGLACAAARWLCPPHWDASPPARARRTLYTAATWAACWAALEWLRAVVLTGFPW FT LNIGYAHVDSPLAGWAPLLGVHGMALLAAFAAAALAGLWQSASGRIDSRQALAAGVALL FT LAGAGWLLGQFSWSRPEGKPLHLRLVQGNVEQSQKFDPALLETGLRRHLELASLPPRPG FT EPKPDLIILPETVLPVFQDQLPASVWDAWIEVARRADTRIAMGVPLHTQPDGATGHRYT FT NSVIGFDASTPVEQLRTGTTAMRYDKQHLVPWGEYVPPGFRWFVDMLDIPLGDFDRGAA FT RQPSFDIAGQRIAFNICYEDLFGPELLPALQDGPDGRPGATIMANVSNLGWFGNTWALR FT QHLQIGRLRTMETARPMVAATNTGITAAIDARGRVAAALPAGRAGVLPVAVQGMTGLTP FT YARFGDKPALALIGLLLIAAAARGRRPRQP" FT misc_feature complement(join(1447044..1447112,1447149..1447217, FT 1447260..1447328,1447425..1447493,1447506..1447574)) FT /note="5 probable transmembrane helices predicted for FT BB1353 by TMHMM2.0 at aa 21-43, 48-70, 103-125, 140-162 and FT 175-197" FT CDS complement(1447748..1448650) FT /transl_table=11 FT /gene="corC" FT /locus_tag="BB1354" FT /product="magnesium and cobalt efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1038" FT /protein_id="CAE31852.1" FT /translation="MSAWTMSDPYPATEAHAQRAAKSSPKSLLDRLLSLVRREPEDREG FT IKAILEAAHERELLDAESYAMIKGALAVSERTVADIMVPRSRMDLLDISQPLPQLLATI FT IETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVRPAVFIPEVKRLNVLLR FT EFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDIEDEFDEDEEESIFPEGENQWRLT FT ASTDISHFNATFATDLPDDEYDSVGGWLGGQLGRIPRRGDSADHDGLHIEVVRADARRA FT LWLRVRRNAGAQPPASAAE" FT misc_feature complement(1447781..1448017) FT /note="HMMPfam hit to PF03471, DE Transporter associated FT domain, score 2.3e-19" FT misc_feature complement(1448063..1448224) FT /note="HMMPfam hit to PF00571, DE CBS domain, score FT 2.2e-05" FT misc_feature complement(1448243..1448407) FT /note="HMMPfam hit to PF00571, DE CBS domain, score FT 4.3e-08" FT CDS complement(1448776..1449249) FT /transl_table=11 FT /locus_tag="BB1355" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1039" FT /protein_id="CAE31853.1" FT /translation="MATELSLSVQYGVADARLPRWRLRRWVQYALAGAAGDGHAGLAGA FT ELGLRLVGLAEGRRLNREFRGRDYATNVLTFEYGTGPDGVARGDIVVCVPVLAREAREQ FT RKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPYLAA" FT misc_feature complement(1448827..1449096) FT /note="HMMPfam hit to PF02130, DE Uncharacterized protein FT family UPF0054, score 5.2e-28" FT CDS complement(1449239..1450261) FT /transl_table=11 FT /locus_tag="BB1356" FT /product="PhoH-like protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1040" FT /protein_id="CAE31854.1" FT /translation="MSTSRSRARRTMPAIVNLDGDNIHLANLCGPLDENLRQLADGMGV FT KLARRGSRVTIEGEQAELAGRALRRFHEQATHRALSVDDIQLGLVEIGVGRPVEVQADP FT RELDQTLPPVDDESGGVVLRTRRTDLRPRTPRQRDYMNNILKHDITFGVGPAGTGKTWL FT AVACAIDAMERDTVQRLVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLMGFE FT RVQRLFEKQTIEIAPLAYMRGRTLNHAFVILDEAQNTTPEQMKMFLTRIGFGSKAVITG FT DPSQVDLPRGQQSGLAHAVQVLEEVQGIATTRFTSRDVVRHPLVARIVDAYDQAAANGD FT " FT misc_feature complement(1449263..1450240) FT /note="HMMPfam hit to PF02562, DE PhoH-like protein, score FT 7.7e-150" FT misc_feature complement(1449779..1449802) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1450258..1451685) FT /transl_table=11 FT /locus_tag="BB1357" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1041" FT /protein_id="CAE31855.1" FT /translation="MQETTVKRDGASPSDAGTPATTAQGLGKLYIRTFGCQMNEYDSDK FT MADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDLGRVQHLKKQNPNLVIGV FT GGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRRAQGVSQVDISFPEIEKFDAL FT PPPRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFDDVLLEVADLADQGVKEVTL FT LGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIERIRYTTSHPKEMTQRMVDAYARLP FT KLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRLRAARPSLTLSSDFIVGFPGETE FT EDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDTPQDVKLRRLQQLQALINQQAA FT AIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFPGVPRLIGHMVDVVVTHAHTN FT SLRGRVAGIERDTSGAE" FT misc_feature complement(1450288..1450479) FT /note="HMMPfam hit to PF01938, DE TRAM domain, score FT 9.4e-16" FT misc_feature complement(1451101..1451163) FT /note="PS01278 Uncharacterized protein family UPF0004 FT signature." FT misc_feature complement(1451302..1451604) FT /note="HMMPfam hit to PF00919, DE Uncharacterized protein FT family UPF0004, score 2.6e-49" FT CDS 1451842..1452570 FT /transl_table=11 FT /locus_tag="BB1358" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1042" FT /protein_id="CAE31856.1" FT /translation="MTAEPITAFPPPKSGLPGQGLAGLLRRCLVPVLLLLGCAAWLDRP FT LTLWINRSVSPQVNTVFDYIGNLGDSGTYVALGLAAYILGLQGMLRGWAVPWGWTCEKI FT ARAGMLLLATLTAGGLVTWVLKNVVARARPEVLLDDGIYGMGRMFAGNPFNSFPSSHTQ FT TAFAVAAVLGILAPRWRWPALALAALVAISRVINRDHYLSDVCAAALIAVVAAYAIKPY FT VLSPSCTWPLRAPWRWRKRG" FT misc_feature join(1451899..1451967,1452055..1452123,1452151..1452216) FT /note="3 probable transmembrane helices predicted for FT BB1358 by TMHMM2.0 at aa 20-42, 72-94 and 104-125" FT misc_feature 1452079..1452525 FT /note="HMMPfam hit to PF01569, DE PAP2 superfamily, score FT 1.6e-08" FT CDS complement(1452733..1453668) FT /transl_table=11 FT /gene="secF" FT /locus_tag="BB1359" FT /product="protein-export membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1045" FT /protein_id="CAE31857.1" FT /translation="MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEF FT TGGTVMEVSYAQTAQLDQVRTAIGTLGYTDFQVQNFGTSRDVMIRLPIAEGQTSATQSE FT TVMGALKAADPAVELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKFAVA FT GVIANLHDVVIILGFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKA FT SVQEVINSAITQTISRTIITHGSTQMMVLAMLFFGGPTLHYFSLALTIGIWFGIYSSVF FT VAAALAMWMGVKREDLVKPVKKDGDEVEIA" FT misc_feature complement(1452790..1453584) FT /note="HMMPfam hit to PF02355, DE Protein export membrane FT protein, score 3.3e-97" FT misc_feature complement(join(1452793..1452861,1452871..1452939, FT 1453045..1453113,1453123..1453191,1453204..1453272, FT 1453552..1453620)) FT /note="6 probable transmembrane helices predicted for FT BB1359 by TMHMM2.0 at aa 17-39, 133-155, 160-182, 186-208, FT 244-266 and 270-292" FT misc_feature complement(1453501..1453668) FT /note="Signal peptide predicted for BB1359 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.625) with cleavage site FT probability 0.291 between residues 56 and 57" FT CDS complement(1453718..1455598) FT /transl_table=11 FT /gene="secD" FT /locus_tag="BB1360" FT /product="protein-export membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1046" FT /protein_id="CAE31858.1" FT /translation="MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKV FT DQATLEQVQQIIENAQLPADSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAG FT DPHYTVALNLLPASPPWMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLV FT ADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKL FT QLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVA FT KAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVVLTGEN FT LQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVTAPVI FT RSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYS FT TLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGM FT AIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPI FT RGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLSSISIGTVWKPKAN" FT misc_feature complement(1453775..1454551) FT /note="HMMPfam hit to PF02355, DE Protein export membrane FT protein, score 2.1e-06" FT misc_feature complement(join(1453778..1453846,1453856..1453924, FT 1454024..1454092,1454105..1454173,1454177..1454236, FT 1455512..1455580)) FT /note="6 probable transmembrane helices predicted for FT BB1360 by TMHMM2.0 at aa 7-29, 455-474, 476-498, 503-525, FT 559-581 and 585-607" FT CDS complement(1455665..1456009) FT /transl_table=11 FT /locus_tag="BB1361" FT /product="putative secreted protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1047" FT /protein_id="CAE31859.1" FT /translation="MSAIDTAGLVLAQAAPAEGNALMGMLPIVLMFVILYFLMIRPQMK FT RQKEHRNMVAALSKGDEVVTSGGMLGRVSKVTDSYITVEVSELADKPVEVVMQKTAVSA FT VLPKGTIKAL" FT misc_feature complement(1455692..1455952) FT /note="HMMPfam hit to PF02699, DE Uncharacterized secreted FT proteins, YajC family COG1862, score 6.8e-26" FT misc_feature complement(1455893..1455952) FT /note="1 probable transmembrane helix predicted for BB1361 FT by TMHMM2.0 at aa 20-39" FT CDS complement(1456158..1457294) FT /transl_table=11 FT /gene="tgt" FT /locus_tag="BB1362" FT /product="queuine tRNA-ribosyltransferase" FT /EC_number="2.4.2.29" FT /note="ortholog of Bordetella pertussis (BX470248) BP1049" FT /protein_id="CAE31860.1" FT /translation="MTGLQFELLATDGGARRGRLTLNHGVVETPIFMPVGTYGSVKAML FT PHELKEIGAQIVLGNTFHLWLRPGTAIMEKHGGLHGFMQWDKPILTDSGGFQVFSLQGM FT RKITEEGVKFASPIDGARLFLTPEESMRIQRSLNSDIVMVFDECTPYEIDGRPASVDEA FT ARSMRMSLRWARRSRDEFDRLGNPNALFGIVQGGMYEALRDESLAGLAEIGFHGYAIGG FT LSVGEPKEDMMRILAHVTPRLPAQAPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNAR FT NGWLFTRYGDVKIRNARYRDDTRPLDPSCACHTCGHFSRAYLHHLQRANEITGARLNTL FT HNLHFYLAIMEEMREAIAAGRFEAWRAQFAADRARGVD" FT misc_feature complement(1456182..1456913) FT /note="HMMPfam hit to PF01702, DE Queuine FT tRNA-ribosyltransferase, score 4.7e-135" FT CDS complement(1457291..1458364) FT /transl_table=11 FT /gene="queA" FT /locus_tag="BB1363" FT /product="S-adenosylmethionine:tRNA FT ribosyltransferase-isomerase" FT /EC_number="5.-.-.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1050" FT /protein_id="CAE31861.1" FT /translation="MAAAFHRTYRVPTPLTLADFDYHLPPELIAQSPAAERGGSRLLHL FT DAASRLHDRRFPDLAGLLRPHDLLVFNDTRVIKARLTGQKATGGKVEVLVERITAPDRA FT LVHVRASKSPGPGMRLRLAEAFEAEVLGREGELFDLRFPAPVLDLLDAHGATPLPPYIT FT HAADATDERRYQTVYAREPGAVAAPTAGLHFDQPMLEQLAAQGVQRAFVTLHVGAGTFQ FT PVRVQNLAEHIMHAEWYTVPEATVAAIARARAHGGRIVAVGTTSVRALESAAAQAQDGP FT LAAAQGDTRLFITPGYRYRIVDALLTNFHLPQSTLLMLVSALAGVAPIRRAYAHAVAER FT YRFFSYGDAMFIETPAP" FT misc_feature complement(1457687..1458322) FT /note="HMMPfam hit to PF02547, DE Queuosine biosynthesis FT protein, score 9.4e-84" FT CDS 1458522..1459958 FT /transl_table=11 FT /locus_tag="BB1364" FT /product="probable D-alanyl-D-alanine carboxypeptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1051" FT /protein_id="CAE31862.1" FT /translation="MRRAGKQGKWQQWLAGVMLALGAAGAAAQGLPSSLVAAWKATKLP FT DQSLSLVVQEINGPRLATLNAKEPRNPASVMKLVTTWAALSELGPSYAWRTEFLTEPGN FT RPDAHGVLRGPLYLRAGGDPQLLLQDLWALLRELRLRGVKQIGDLVVDRSIFGQVAIDP FT GAFDGASDRAYNASPDALMVGFGAQRLLFTPDAAARKWVPMIDPPLPGLRLEGAVEWSD FT VRCPGPPVVGTEPVVTQQGVSIRLSGKVAGSCGEFSLYRLALSQPEYASAVFRLLWREL FT GGTLKGQIRSGVVPPDAVVLASHDSPTLGEAIRTINKRSNNVMARTLLLTLGAERGRRP FT ATVESSGVVARTVLGAQGLEMPELVIDNGSGLSREGRVSADSLASMLTVAWNSPLMPEF FT ISSLAIAGVDGTVRRRLKGNGAQGMAHLKTGSLRDVRAVAGYVLGASGKRYVVVSMVNH FT ENAAAVRSFDDALVAWLAEQ" FT misc_feature 1458522..1458605 FT /note="Signal peptide predicted for BB1364 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.794 between residues 28 and 29" FT misc_feature 1458735..1459892 FT /note="HMMPfam hit to PF02113, DE D-Ala-D-Ala FT carboxypeptidase 3 (S13) family, score 6.9e-66" FT CDS 1460048..1460689 FT /transl_table=11 FT /gene="upp" FT /gene_synonym="uraP" FT /locus_tag="BB1365" FT /product="uracil phosphoribosyltransferase" FT /EC_number="2.4.2.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP1052" FT /protein_id="CAE31863.1" FT /translation="MPVHEIRHPLIRHKLGIMRRADLSTKSFRELSQEVAALLTYEATK FT DMPLAPASVEGWCGTVEVDKIAGKKVTVVPILRAGIGMLDGVLSLIPGAKVSVVGVARN FT EETLQAHTYLERLVGELDQRLALIVDPMLATGGSMVAAIDMLKRAGCREIRALTLVSAP FT EGIDAVLTAHPDVQIYTASIDQGLNENGYIMPGLGDAGDRIFGTTQKHAE" FT misc_feature 1460096..1460593 FT /note="HMMPfam hit to PF00156, DE Phosphoribosyl FT transferase domain, score 1.8e-09" FT CDS 1461346..1464096 FT /transl_table=11 FT /gene="prn" FT /locus_tag="BB1366" FT /product="pertactin precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1054" FT /protein_id="CAE31864.1" FT /translation="MNMSLSRIVKAAPLRRTTLAMALGALGALGAAPAAHADWNNQSII FT KAGERQHGIHIKQSDGAGVRTATGTTIKVSGRQAQGVLLENPAAELRFQNGSVTSSGQL FT FDEGVRRFLGTVTVKAGKLVADHATLANVSDTRDDDGIALYVAGEQAQASIADSTLQGA FT GGVRVERGANVTVQRSTIVDGGLHIGTLQPLQPEDLPPSRVVLGDTSVTAVPASGAPAA FT VSVFGANELTVDGGHITGGRAAGVAAMDGAIVHLQRATIRRGDAPAGGAVPGGAVPGGA FT VPGGFGPLLDGWYGVDVSDSTVDLAQSIVEAPQLGAAIRAGRGARVTVSGGSLSAPHGN FT VIETGGGARRFPPPASPLSITLQAGARAQGRALLYRVLPEPVKLTLAGGAQGQGDIVAT FT ELPPIPGASSGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSV FT DFQQPAEAGRFKVLMVDTLAGSGLFRMNVFADLGLSDKLVVMRDASGQHRLWVRNSGSE FT PASANTMLLVQTPRGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKP FT APQPGPQPGPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAE FT SNALSKRLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGG FT RWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIANSGFYLDATLRASRLENDFKV FT AGSDGYAVKGKYRTHGVGASLEAGRRFAHADGWFLEPQAELAVFRVGGGAYRAANGLRV FT RDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVRTNGIAHRTELRG FT TRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW" FT misc_feature 1461346..1461456 FT /note="Signal peptide predicted for BB1366 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 37 and 38" FT misc_feature 1462684..1463046 FT /note="HMMPfam hit to PF03212, DE Pertactin, score 3.4e-73" FT misc_feature 1463260..1464093 FT /note="HMMPfam hit to PF03797, DE Autotransporter FT beta-domain, score 2e-88" FT CDS complement(1464164..1465585) FT /transl_table=11 FT /gene="cysG" FT /locus_tag="BB1367" FT /product="siroheme synthase" FT /EC_number="2.1.1.107" FT /note="ortholog of Bordetella pertussis (BX470248) BP1055" FT /protein_id="CAE31865.1" FT /translation="MTLFPIFADLTGRRVLVVGGGAVAVRKTQALLQAGAEVVVGAPRL FT DPALAALAEQGGIARLDGGFEPAWLAGAWLVVAATDDRAVNAAVSEAARARRVFCNVVD FT DAELSSFQVPSVVDRSPLIVAISSSGVAPVLARRLRERIESLFDHSLGQLAALAARYRP FT RIRAARPDLGQRRRFYDWLLDGPVAARLRQQQPGLAEQELEQALRAPQAAPRGSVVLVG FT AGPGDPGLLTLKALRALNEADIILYDRLVSEGVLALARRDAERVPVGKLPGEDHDATQA FT RIHALMLAQARAGRRVVRLKGGDAFIFGRGGEELEYLRAHDVPYEVVPGITAALACAAY FT AGIPLTHRDHAQSVRMVTAHCRADQDTLDWAGLARDQQTLAFYMGVGQLDYVTARLLEH FT GRAPATPFALIENGSRPEQRVVTGTLAELPEIARRRSVRPPALLVIGEVAALADTLQWF FT GQHQHGLPGPQALAA" FT misc_feature complement(1464299..1464937) FT /note="HMMPfam hit to PF00590, DE Tetrapyrrole FT (Corrin/Porphyrin) Methylases, score 7.3e-82" FT misc_feature complement(1464575..1464607) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(1464596..1464697) FT /note="PS00840 Uroporphyrin-III C-methyltransferase FT signature 2." FT misc_feature complement(1464881..1464925) FT /note="PS00839 Uroporphyrin-III C-methyltransferase FT signature 1." FT CDS 1465850..1466566 FT /transl_table=11 FT /locus_tag="BB1368" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1056" FT /protein_id="CAE31866.1" FT /translation="MMVRFFVSIGVLAWAGAAQAGVCDAKFMHDGGQVQLTGSGNIGLG FT ADLGFTEVSKTNGDNCRARVQGMATFSYAGLPPGKSRLDYLMTVKNGQATFVKYAEAGE FT QPRSEGQFDLRMLGLFAYDKISGEGQRLPGASYRLRIGKEAPVGGQPTTVVRIGEKTVG FT ARQDLSTALGRHACWPITYPRSSEPTMATFKGLTLPIPGMDTTVTDWYCPSVNLVMRQD FT IDQAGIKSSVEITQLK" FT misc_feature 1465850..1465909 FT /note="Signal peptide predicted for BB1368 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.955 between residues 20 and 21" FT misc_feature 1466069..1466092 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1466651..1466968 FT /transl_table=11 FT /locus_tag="BB1369" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1057" FT /protein_id="CAE31867.1" FT /translation="MAARRSDEATKEKLIDSVKTSLNDAETLLREAASTTGDKATELRE FT RALASVRRTREALYDAQDAVLERGRRAARATDDYVHDNPWQAISIAGVTGLLLGLLISR FT R" FT misc_feature 1466903..1466956 FT /note="1 probable transmembrane helix predicted for BB1369 FT by TMHMM2.0 at aa 85-102" FT CDS 1467009..1467422 FT /transl_table=11 FT /locus_tag="BB1370" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1058" FT /protein_id="CAE31868.1" FT /translation="MGLRRSVFGVAASLVGLTRTRLELLALEAAGEKIRLIKLLGMAFG FT ALLFLTLAVLVFTITIAVAFWPTESRYAALGWLAGGYGVIGLVLFFLVRRDLVDGPVPF FT AATLEELGRDTDMLERVRDAQRASDGQRNAEDD" FT misc_feature join(1467138..1467206,1467219..1467287) FT /note="2 probable transmembrane helices predicted for FT BB1370 by TMHMM2.0 at aa 44-66 and 71-93" FT CDS 1467424..1467783 FT /transl_table=11 FT /locus_tag="BB1371" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1059" FT /protein_id="CAE31869.1" FT /translation="MARHSASVDRMVRLELLRARAALEREALAQGIVEAGRTLTPGNMV FT KSIWPSLGKANTSRLFWQAFALVRRYPFVSSTLSAMVMGRGARRSGLLKLAGVALVGWQ FT AYRIWQSAREERQAD" FT CDS complement(1467826..1469370) FT /transl_table=11 FT /gene="ubiD" FT /locus_tag="BB1372" FT /product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase" FT /EC_number="4.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1060" FT /protein_id="CAE31870.1" FT /translation="MKYRDLRDFLAQLERQGELKRITAPVSTRLEMTEIADRVLRAGGP FT ALLFENARHNDAPADMPVLANLFGTPRRVAWGMGADDVGALRETGELLASLREPEAPKG FT LRDALAKVSMLKAALWDMSPKTVRSAACQEIVWEGADVDLGRLPIQTCWPGDVAPLLAW FT GLVITRGPNARRQNLGIYRQQPLGPNKLIMRWLSHRGGALDFRDHAQAHPGKPFPIAVA FT LGADPATILGAVTPVPDTLSEYQFAGLLRGSRTEVVKALGSDLSVPASAEIVLEGHLLP FT ADDPRAVAAAVPEGANPPPATGYEMALEGPYGDHTGYYNEQDWFPVFTVDRITMRRNPI FT YHSTYTGKPPDEPAVLGVALNEVFVPLLRRQLPEIVDFYLPPEGCSYRLAVVSIRKQYA FT GHAKRVMFGLWSVLRQFMYTKFIVVVDEDIDPRDWTEVVWAMTTRMDPVRDTVLVENTP FT IDYLDFASPVSGLGGKMGLDATNKWPGETSREWGTPIHMDEAVKRRVDAMWDTLGL" FT misc_feature complement(1467988..1469343) FT /note="HMMPfam hit to PF01977, DE VdcC family, score FT 1.3e-188" FT CDS 1469454..1470284 FT /transl_table=11 FT /locus_tag="BB1373" FT /product="putative transglycosylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1061" FT /protein_id="CAE31871.1" FT /translation="MPDASVAGLFRQLAQGVHHHLAEWLRISSVYLGIAVIVTVSMGFA FT LPGLRDQALQVHKALLTALAPTSMPSAELEPGAEAGADASSAVVMAIPSAPASNATGFL FT GPLRSDTPPAPPNRPSAASSAQVEALRNYISRKYKVAYDATAVLVNTVYKVGREKQLDP FT LLLLAVIAIESRYNPFAESPVGAQGLMQVMTRVHQDKFDAIAHVGKGNPLDPVANIHVG FT STILKDCINRRGSLNGGLACYVGATGPDDGGYGAKVLAERRRLALASGIALARD" FT misc_feature 1469532..1469600 FT /note="1 probable transmembrane helix predicted for BB1373 FT by TMHMM2.0 at aa 27-49" FT misc_feature 1469901..1470251 FT /note="HMMPfam hit to PF01464, DE Transglycosylase SLT FT domain, score 6.2e-14" FT CDS complement(1470319..1471473) FT /transl_table=11 FT /locus_tag="BB1374" FT /product="probable aminotransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1062" FT /protein_id="CAE31872.1" FT /translation="MPRLATRTNDFLTFQVVELFKEAQALQAAGRDIISLGIGEPDFTA FT PPQVVEALERAARAGLSGYSAPAGLSALREAIAAFYESEFGARVDPARIIVTAGASGAL FT ALACAALVNPGAQVLMPDPSYPANSNFVLAAGGQPRLIPSTAAKRFQLSAQDVRDHWND FT ATQGVLIASPSNPTGTSIAHDELAELLAAVRERQGFSIVDEIYLGLSYESQPRSALLLD FT DDIIVINSFSKYFHMTGWRLGWMIVPESMVAKVEKMAASLAICAPTLAQHAALACFTPD FT ALKIFEHRREAFKQRRDYLLPEFERLGIPVPVRPDGAFYIYADIAALGTTSMAFSHRLL FT HEGGVAAVPGLDFGPAHGERTMRFSYATGLDRLQEAVARIEKLL" FT misc_feature complement(1470325..1471239) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 1.2e-34" FT CDS 1471648..1472388 FT /transl_table=11 FT /locus_tag="BB1375" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1063" FT /protein_id="CAE31873.1" FT /translation="MLRARSDAEVRRARALCQEYGVSLGLPGARPAGRPVLQIDPRGLR FT ALAPEGGAWRAGPGCLAGELAAAGLDQFAEVAPTCTLADWLADSRGWPTGETGASGVLE FT ASVLLADGTAEALGPFGAADVRPLRSATVQRLVPALFQLAGGQDAAACLAQPAWPARYR FT LDALQPREPAGVNLAHLLLGHDGALAWVESVLLAPAAAPPPAASGSAPAEAARLDARVR FT ALFDPDGVLAARAGSGAVGAKGRE" FT CDS 1472406..1474793 FT /transl_table=11 FT /gene="maeB" FT /locus_tag="BB1376" FT /product="NADP-dependent malic enzyme" FT /EC_number="1.1.1.40" FT /note="ortholog of Bordetella pertussis (BX470248) BP1064" FT /protein_id="CAE31874.1" FT /translation="MRSRPARAGAGSIFPACAAASFTFAAPTYVIAIMDANFRKAALEY FT HEHGRPGKISVTPTKQLSNQRDLALAYSPGVAAACEEIVDDPVNVFRYTGRGNLVGVIT FT NGTAVLGLGNIGALASKPVMEGKAVLFKKFAGLDVFDIEINETDPDKLVEIIAGLEATF FT GGINLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVCAAFINGLEVVGKDIAQVK FT VVTSGAGAAALACLDLMVDLGLPLEHIWVTDIEGAVYQGRTALMDPDKARYAQPTEART FT LAEVIEGADVFLGLSAGNVLKPEMVAAMAANPLILALANPNPEILPEAAHAVRDDIVMA FT TGRSDYPNQVNNVLCFPYIFRGALDVGATTITREMEKAAVLAIASLAREEQNEVVAAAY FT GTYDISFGRDYLIPKPFDPRLIVRIAPAVAKAAMESGVATRPLADLDAYAEQLQQFVYH FT SGAFMKPLFSQAKQIVRDGGRARIVFTEGEDERVLRAIQVIVDEGLARPILVGRPAVLS FT ARIEKFGLRLRLGQDVEVCNPDYDERFHQYWTTYWELMCRRGITKEMARVEMRRRLTLI FT GAMMVRLGDADGLICGTVGAYADHLRFIDEVIGRKPGAQTYAAMNILLLNERTVALVDT FT HVNDDPSAEQIAEYTVAAAEEMRRLNLAPKVALLSRSNFGTGSSASGAKMRRALELVRE FT RAPELEIDGEMHGDCALDEALRLRILPSSTLKGEANLLVCPNVDSGNIAYNLLKTTAGG FT NVAVGPFLLGANAAVHILTSSSTVRRIVNMAAMAVVNADAVR" FT misc_feature 1472556..1472987 FT /note="HMMPfam hit to PF00390, DE Malic enzyme, N-terminal FT domain, score 1.2e-73" FT misc_feature 1472991..1473704 FT /note="HMMPfam hit to PF03949, DE Malic enzyme, NAD binding FT domain, score 5.1e-114" FT misc_feature 1473786..1474769 FT /note="HMMPfam hit to PF01515, DE Phosphate acetyl/butaryl FT transferase, score 2.1e-107" FT CDS 1474843..1476006 FT /transl_table=11 FT /locus_tag="BB1377" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1065" FT /protein_id="CAE31875.1" FT /translation="MTGGGARAAYQVGALSAIMAILDPKARPGYPNPFPIICGTSAGAV FT NAAALACRADRPHLAVRRMRRLWASLETGMVYRADAPGLIRTGVRWLGLLSLGWMYAGL FT TRKRPQSLLDSSPLADLLGRVMDFDRMRHNLARGKLSALAITASGYTSGEHLTFYQSDR FT PIDPWHRFLRRAVPSAIGIDHIMASSAIPFVFPARPVRVHGQVEWCGDGSMRQLAPISP FT AIHLGATRVLVIGTGFHDDTHPEKREEDPPYPSLAQVGGHALSSIFLDGLSMDVERLER FT TNFLLSRGGQEAEPEFALRRVDVLALTPSQSLDQLALEHLDDMPSEARTLFRVLGVSSD FT PSRSNGGALMSYLLFEHTYTQRLIELGYADTMRRIDDVVKFFGEAGA" FT misc_feature 1474843..1475514 FT /note="HMMPfam hit to PF01734, DE Patatin-like FT phospholipase, score 4.3e-07" FT CDS 1476003..1476467 FT /transl_table=11 FT /locus_tag="BB1378" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1066" FT /protein_id="CAE31876.1" FT /translation="MTRNGQTTLQRQLRRGGALDHDGLDKQAVVDATRELGMSLLVADC FT DRARSRSAVLRAIAKAVDFPEYFGGNLDALYDCLCDTVLDHKTGIVLWLYRLHSGDPAL FT HEDSNLIDGVCADTAEFARENGRVFAYVIEHAGRHPDPEPGVAAAPYGEA" FT CDS complement(1476494..1477234) FT /transl_table=11 FT /locus_tag="BB1379" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0998" FT /protein_id="CAE31877.1" FT /translation="MSLPRFYCDARLAPGERVALPEALAHHAVRVLRLRAGAALVLFDG FT AGGEYPATLEIEGKAAWAQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAW FT RVSPIAAQRSVLQLNGARAEKRLAHWQRIAQAAAEQCGRNRLMAVDAPQALAAWLAQAP FT GAALRLLCHPQAELDLAGALARHAAHDDICLLVGPEGGWSDEELEQARAAGVQAVRFGP FT RVLRTETAGIALIAAVSAIRGWNG" FT CDS 1477429..1479465 FT /transl_table=11 FT /gene="tktA" FT /gene_synonym="tkt" FT /locus_tag="BB1380" FT /product="transketolase 1" FT /EC_number="2.2.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0999" FT /protein_id="CAE31878.1" FT /translation="MSNPTAPKLALADAIRVLAMDAVQKANSGHPGAPMGMAEIAQALW FT LGNLRHNPADPAWANRDRFVLSNGHGSMLIYALLHLTGYDLPLEELKNFRQLHSRTPGH FT PEVGITPGVETTTGPLGQGLANAVGMALAEALLAAEFNRAGHTVVDHHTYVFLGDGCLM FT EGISHEACSLAGTLKLSKLVALYDDNGISIDGHVEHWFADDTATRFEGYGWNVIRGVDG FT HDVAAVDAAIKQARAQSEKPTLIVCRTVIGKGSPNMAGTHNVHGAPLGNDEIAATRAAL FT GWSAGPFEVPQDIYAAWDSRPAGALAQAAWEDKFQAYAAQYPAEAAEFTRRMKGELPEG FT FAARFEAFLQATVAKGETVATRKASQFAIAELAGLLPEMLGGSADLTGSNFTDWKGVAP FT LRAGHHGVHFGRHINYGVREFGMAAIMNGIALHGGYLPFGGTFLTFSDYSRNAIRMAAL FT MKQRVVHVFTHDSIGLGEDGPTHQSIEHAASLRLIPNLSVWRPCDTVETAAAWGAAVTR FT PASIGMDVHDGGPTALLLSRQNLPFVARDEATQKAIVRGGYVLRDAHDARAAIIATGSE FT VAIALAAQELLAADGIAVRVVSMPSTDVFDRQDAEWKREVLPAGMPRVAVEAGVTAFWH FT KYVGLEGAVVGIDRYGESAPAGALFKFFGLTAEKVAEAVKQVL" FT misc_feature 1477447..1478442 FT /note="HMMPfam hit to PF00456, DE Transketolase, thiamine FT diphosphate binding domain, score 8.6e-227" FT misc_feature 1477474..1477536 FT /note="PS00801 Transketolase signature 1." FT misc_feature 1478500..1479054 FT /note="HMMPfam hit to PF02779, DE Transketolase, pyridine FT binding domain, score 2.5e-63" FT misc_feature 1479097..1479438 FT /note="HMMPfam hit to PF02780, DE Transketolase, C-terminal FT domain, score 3e-17" FT CDS 1479483..1480493 FT /transl_table=11 FT /gene="gap" FT /gene_synonym="hexC" FT /locus_tag="BB1381" FT /product="glyceraldehyde-3-phosphate dehydrogenase" FT /EC_number="1.2.1.12" FT /note="ortholog of Bordetella pertussis (BX470248) BP1000" FT /protein_id="CAE31879.1" FT /translation="MTIRVAINGYGRIGRNILRAHYENGKKHDIEIVAINDLGDPKTNA FT HLTRFDTAHGKFPGTVTVDGDYMVVNGDKIRVLANRNPAELPWGELGVDVVLECTGFFT FT SKEKAGAHLKGGAKKVIISAPGGKDVDATIVFGVNQNVLKAEHTVISNASCTTNCLAPL FT VKPLHDKLGVETGLMTTVHAYTNDQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGLV FT LPELNGKLDGFAIRVPTINVSLVDLSFVAKRDTTVEEVNSILQAAAEGELKDILTYNTE FT PLVSVDFNHNPASSNFDATLTKVSGKLVKVSSWYDNEWGFSNRMLDTTVALMSAK" FT misc_feature 1479486..1479947 FT /note="HMMPfam hit to PF00044, DE Glyceraldehyde FT 3-phosphate dehydrogenase, NAD binding domain, score FT 1.8e-90" FT misc_feature 1479939..1479962 FT /note="PS00071 Glyceraldehyde 3-phosphate dehydrogenase FT active site." FT misc_feature 1479948..1480427 FT /note="HMMPfam hit to PF02800, DE Glyceraldehyde FT 3-phosphate dehydrogenase, C-terminal domain, score 7e-99" FT CDS 1480611..1481804 FT /transl_table=11 FT /gene="pgk" FT /locus_tag="BB1382" FT /product="phosphoglycerate kinase" FT /EC_number="2.7.2.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP1001" FT /protein_id="CAE31880.1" FT /translation="MSNVNTLSALAKSGALSGKRVFIRADLNVPFDDAGRISEDTRIRA FT SVPGIRLALDAGAAVMVTSHLGRPKEGALTEADSLAPVAQRLSELLGMQVRLVPDWVDG FT VSVEPGEVVLLENCRGNVGEKKDDEGLSRKMAALCDVYVNDAFGTAHRAEATTHGIARF FT APVACAGPLLEAELEALGRALHDPKRSLVAIVGGSKVSTKLSILQSLADKVDQLVVGGG FT IANTFMLAAGLPIGKSLAEPEQVEQARAVIEIMKRRGAEVPIPTDVVCAKSFGADAAAT FT VKAAADVAEDDMILDIGPQTAQRLADILKAAGTIVWNGPVGVFEFDQFAHGTEVVARAI FT ADSAGFSIAGGGDTLAAIAKYGIADQTGYISTGGGAFLEFLEGKALPAVAVLQARAA" FT misc_feature 1480614..1481798 FT /note="HMMPfam hit to PF00162, DE Phosphoglycerate kinase, FT score 1.3e-175" FT misc_feature 1480668..1480700 FT /note="PS00111 Phosphoglycerate kinase signature." FT misc_feature 1481301..1481324 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1481834..1482607) FT /transl_table=11 FT /gene="fabI" FT /gene_synonym="envM" FT /locus_tag="BB1383" FT /product="enoyl-[acyl-carrier-protein] reductase [NADH]" FT /EC_number="1.3.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP1002" FT /protein_id="CAE31881.1" FT /translation="MNAAAPLQGRRGLVTGIANQDSIAWGCARAFRALGAELAVTYLND FT KARVHVEPLARSIDAALLLPLDLRVDGQLESVFEQIGAHWGSLDFVMHSIAYAPRDDLQ FT GRVVDCSRAGFLQAMDISCWSFIRMAHLAEPLMPKGGTLFCMTYYGSQMVVEHYNMMGP FT VKAALESATRYLAAELGPQGIRVHAISPGPLKTRAASGITGFDALLDRAQAKAPARNLV FT GIDDVGEATAWLATDAARRITGQTLYIDGGYHIID" FT misc_feature complement(1481849..1482586) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 2.3e-08" FT CDS complement(1482604..1483794) FT /transl_table=11 FT /gene="ackA" FT /gene_synonym="ack" FT /locus_tag="BB1384" FT /product="acetate kinase" FT /EC_number="2.7.2.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP1003" FT /protein_id="CAE31882.1" FT /translation="MSDNLLVINAGSSSLKFYLYEIAEGDELRPTLGGQLDGIGGSRPH FT LRIRAQDGHTLLERDVAPTHAADVPGAQEVLGTWLSGHLGGAPCAIGHRVVHGGTQYDA FT PVLVDDDVLAQLDDLTPLAPLHQPNNLAPIRVIRERRPNIPQVACFDTAFHRTHSPLAD FT RYALPEHLYQEGVRRYGFHGLSYEYIAQRLRRALPEIAGGKIVAAHLGNGVSACAMVDG FT RSVDSTMGFTALEGLPMGTRPGRLDPGVVLWMMERGMSHDDIEHLLYHDCGLKGLSGIG FT NDVRELLASDAPAARLALDYFAWRVAEGIAGLGCAMNGIDAIVFTAGIGENAAPVRAAI FT ARHWEWLGVRLDQARNARHGPRISSDDSAIGVYVVRTNEELIIAQHTLALVRQGQA" FT misc_feature complement(1482640..1483785) FT /note="HMMPfam hit to PF00871, DE Acetokinase family, score FT 1.2e-113" FT misc_feature complement(1483747..1483782) FT /note="PS01075 Acetate and butyrate kinases family FT signature 1." FT CDS complement(1483820..1484758) FT /transl_table=11 FT /locus_tag="BB1385" FT /product="phosphate acetyl/butaryl transferase" FT /EC_number="2.3.1.19" FT /note="ortholog of Bordetella pertussis (BX470248) BP1004" FT /protein_id="CAE31883.1" FT /translation="MSATRHNHYERLIAHARTLPALPCAVAHPCDETSLGAALQAMQLG FT LLTPILVGPQQKIRDVAERCGLDLGGAAIVDAPHSHAAAAAAVQLVRGGQASLLMKGSL FT HTDELMHEVVARDTGLRTERRISHVFIMDVPTYPEPLFITDAAINIFPDLETKADIVRN FT AIALHLGLGLGEPRVAILSAVEQVMPSIPSTLEAAALCKMADRGQIQGGILDGPLALDN FT AISPEAAQVKGIVSPVAGRAQVLVVPDLEAGNMLAKNLSFLANAQAAGIVLGARVPIVL FT TSRADSAQTRLASCAVATLYAHHLARATPLA" FT misc_feature complement(1483862..1484740) FT /note="HMMPfam hit to PF01515, DE Phosphate acetyl/butaryl FT transferase, score 3.5e-27" FT CDS complement(1484755..1487085) FT /transl_table=11 FT /locus_tag="BB1386" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1005" FT /protein_id="CAE31884.1" FT /translation="MAAPAADRTAPDRSPAPAAHPAANLWTSAYQYTLDAWQRGILYTD FT VMRQRGNQYLTHMAKRAPNVLSMKSELVLDGRKFERPVNYALLRIVPPADAPVDPQKRP FT FLVVDPRAGHGPGIGGFKPESEIGVAVRAGHPCYFATFLPHPTDTQTVEDVMRAEARFL FT EEIIALHPQAEGRPVVVGNCQAGWQIMMTAAMRPELFGPIIVAGAPLSYWAGWRDMNPM FT RYSGGLLGGSWLTQMTSDLGNGKFDGAWLVQNFENLNPANTLWSKQYNLYAKVDTEAPR FT YLEFEKWWGGHVFLNGPEIQYIVDNLFVGNRLATAGLVTSDGIRIDLRNIRSPIIVFCS FT KGDNITPPPQALGWITDLYQDDREVVAHNQTIVYAVHESIGHLGIFVSGAVARKEHQEF FT TANIDVIDVLPPGIYQAEIADKTPDTPNADLAYGDYVLSFERRRLDDVRAIVERNEEDD FT QRFAAVARISDINLGLYRSFVQPWVRAAVTPQSAEWMQRMHPLRLPYELISDRNPWVAP FT VAQLAEQVREQRQPAAPDNPFWALQKMASDAIVAGLDIWRDLRDSACERIFMATYGSPL FT VQDWAGLGAKDGPPRRHPGVSPEHRDFMAARAAELRAQIDQGGLREAGLRMLLYVSGAE FT GGVDERSFAMIRKMRADTDAKLSLQAFKDATRDQALMMQLDGPAAIRAIPKLLENASAA FT DIRATLHGITHVLEAAGPLSDRARASLDEMKRLFQGAERRAVKRADAPAPARKAAARKT FT AAGKTAARPAGRKAAAPRKGRTA" FT CDS complement(1487240..1487947) FT /transl_table=11 FT /locus_tag="BB1387" FT /product="probable glutathione S-transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1006" FT /protein_id="CAE31885.1" FT /translation="MRYAVPIGRRGTRGACRPRSPPLPAPLTLYVDARFRSPYAMSAHV FT ALAEKQLEFEVRLVDLAAGEQRMQPYQSRALTARVPALAHAGFHLTESSAIQEYLEDAF FT APPAHPALYPAGAQARARARQVQAWLRTDLAALRRARPIDSVFDAPATTPLDDAAHCDA FT AKLIRVAEALLPPGQAHLFGAWSIVDTELALALNRLAHSGDDLPALLRDYAAAQWQRAS FT VQAWLRHYEAARG" FT misc_feature complement(1487642..1487872) FT /note="HMMPfam hit to PF02798, DE Glutathione FT S-transferase, N-terminal domain, score 3.8e-11" FT CDS complement(1487985..1488314) FT /transl_table=11 FT /locus_tag="BB1388" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1008" FT /protein_id="CAE31886.1" FT /translation="MKMHDIPFGTTDWSTVPETEHPGESGKALWRTRQFGDIRVRVVEY FT TPGYLADHWCSKGHILFCLEGELHTELEDGRTFVLTPGMSYQVADQAEAHRSSTRGGAR FT LFIVD" FT CDS complement(1488346..1488894) FT /transl_table=11 FT /locus_tag="BB1389" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1009" FT /protein_id="CAE31887.1" FT /translation="MPTPADLQLLADYNQWMNQRLYACAAQLPPDELARERGAYFGSLL FT GTLNHVAVGDRVWLQRFAAHPARPAALQPVLALPTPARLDEVLYPALGPLAAHRAWLDR FT CIVDWAAQLRPDDLACELAYTSLAGEAARRPFGGLVLHFFNHQTHHRGQATTLLSQAGI FT DMGATDLVLRVPASGDAPA" FT CDS complement(1488913..1489398) FT /transl_table=11 FT /locus_tag="BB1390" FT /product="putative acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1010" FT /protein_id="CAE31888.1" FT /translation="MLEIIEADFNDAAHARAIIALLDEYARGPMGGGEPLSAHARANLV FT AELARRPHARALLAWQDGEPAGLAICIEGFSTFACRPLLNLHDLAVAERFRGQGVGTRL FT LEALEALAARLGCCKVTLEVLEGNTRAQALYRRLGYAGYELAADTGRAMFWQKKLSA" FT misc_feature complement(1488976..1489230) FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 2.4e-22" FT CDS 1489711..1490514 FT /transl_table=11 FT /gene="cbpA" FT /locus_tag="BB1391" FT /product="curved DNA-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1011" FT /protein_id="CAE31889.1" FT /translation="MRDVNEAYDVLGNQEKRQAYDNLAAGVAPDGGFQPPPGWDQGFEF FT HYARDGEGDQQFSDFFSSLFGGQARRRAAQQDFRARGEDHHAAIEVDLEDALRGATRDI FT SLRSMQPDEHGQPQVRTRTLSVRIPAGVREGQYIRLAGQGMPGYGGAENGDLYLEVRFK FT PHPRYRAEGRDLYMNLPVAPWEAALGAQVEAPTPGGAVEVAVPPGSRNGRKLRLRGRGI FT PGDPPGDLYLVLDLVLPPADSEAAREAYRKMAQDLAFDPRRNLGV" FT misc_feature 1490116..1490472 FT /note="HMMPfam hit to PF01556, DE DnaJ C terminal region, FT score 2.1e-27" FT CDS 1490517..1490834 FT /transl_table=11 FT /locus_tag="BB1392" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1012" FT /protein_id="CAE31890.1" FT /translation="MSKIVVTQATVIGKTRALSAEELAHACDAEVEWVARLVEVGIVPA FT RGRQPAEWRFYSLDLRRAREARRLERDMGAGLDAAALILDLCQEVRQLKARLRALGEPP FT A" FT CDS 1490880..1491593 FT /transl_table=11 FT /locus_tag="BB1393" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1013" FT /protein_id="CAE31891.1" FT /translation="MRSKPIDAPGPPGAPVSAGLKACVPVMIGYFPVAVAFGIAGLAAG FT LQPLQVILISVFVYAGASQFLLLASIKAGTPWLWVVALCSLLNARHLLYGPLLARFLPE FT SLRERLRIAFLLTDEVFATAFNRIGAVEPASRGRWITALGLGAWATWIAGTAVGVYAGE FT GLERHYPVLSQVMRFALPALFLALVCQSMQPGMRRPVLAALAVGGALAAVGQTTLAILA FT GAAAGCLCHRPERRA" FT misc_feature 1490949..1491440 FT /note="HMMPfam hit to PF03591, DE AzlC protein, score FT 1.2e-33" FT misc_feature join(1490949..1491017,1491030..1491098,1491108..1491176, FT 1491294..1491362,1491390..1491443,1491477..1491545) FT /note="6 probable transmembrane helices predicted for FT BB1393 by TMHMM2.0 at aa 24-46, 51-73, 77-99, 139-161, FT 171-188 and 200-222" FT CDS 1491590..1491934 FT /transl_table=11 FT /locus_tag="BB1394" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1013" FT /protein_id="CAE31892.1" FT /translation="MTGESIGFWAAVAAMAVITYLTRALPFMLSTRSRLLRRLSEEGSA FT LAALGPSLLAGIAAAVIVPDLVGAQAVDGRGAYIGGLVVTAVAARLVGNSGAAVILGLA FT GYGLLLALGL" FT misc_feature join(1491602..1491670,1491728..1491796,1491857..1491925) FT /note="3 probable transmembrane helices predicted for FT BB1394 by TMHMM2.0 at aa 5-27, 47-69 and 90-112" FT CDS complement(1491955..1493430) FT /transl_table=11 FT /gene="pitA" FT /gene_synonym="pit" FT /locus_tag="BB1395" FT /product="probable phosphate transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1014" FT /protein_id="CAE31893.1" FT /translation="MLHLFSGLDLWVGLSLVLALTFVLAFEFINGFHDTANAVATVIYT FT KAMPPHLAVILSGIFNFLGVLLGGVGVAYAIVHLLPVELLINVDTGRGLAMVFAMLSAA FT IAWNLGTWYFGIPASSSHTLIGSILGVGMANALLTDISLAEGVNWGKAIDIGLSLVVSP FT VAGFMVAGGILLLLKRWLPLSKMHKTPEQRRAIDAKKHPPFWNRLVLVLSAMGVSFVHG FT SNDGQKGIGLIMLVLIGIVPAKFVLDVNSTTYQIDRTRDAASHLSAFYHRNEATLGEFL FT ALSRGGNGADLPKTFRCDPKLTMPTIAALQDDLRGVTNYADLSADKRIDVRRYLLCLDD FT TAKKVARLEGLPARERADLQRLRGDLTATTEYAPLWVIVAVALALGIGTMVGWRRVVLT FT VGEKIGKQGMTYAQGMAAQVTAVGAIGLANVFSLPVSTTHVLSSGVAGTMVANNSGLQG FT GTVRTILMAWVLTLPASMLLSAGLFWVGTLLAA" FT misc_feature complement(join(1491973..1492041,1492138..1492206, FT 1492249..1492317,1492690..1492743,1492771..1492824, FT 1492900..1492968,1492996..1493064,1493083..1493151, FT 1493209..1493277,1493335..1493403)) FT /note="10 probable transmembrane helices predicted for FT BB1395 by TMHMM2.0 at aa 72-94, 114-136, 156-178, 185-207, FT 217-239, 265-282, 292-309, 434-456, 471-493 and 526-548" FT misc_feature complement(1491994..1493343) FT /note="HMMPfam hit to PF01384, DE Phosphate transporter FT family, score 6.2e-75" FT CDS 1493615..1494265 FT /transl_table=11 FT /gene="mog" FT /gene_synonym="mogA" FT /gene_synonym="chlG" FT /locus_tag="BB1396" FT /product="molybdopterin biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1015" FT /protein_id="CAE31894.1" FT /translation="MSTPTSPSAPLVRRHPDELLIGLVSISDRASTGVYQDQGLPSLRD FT WLGTALTSPWQAVERLIPDEPAAISAALVDLVDGCGCDLVLTTGGTGPARRDCTPEATL FT AVATKEMPGFGEQMRQISLRFVPTAILSRQVAVIRETAGHAALIINLPGQPKAIRETLE FT GLKDADGAVLAAGVFAAVPYCIDLIGGPYAETDPAVIKAFRPKSALRQPAARQ" FT misc_feature 1493666..1494118 FT /note="HMMPfam hit to PF00994, DE Probable molybdopterin FT binding domain, score 3.5e-30" FT misc_feature 1493864..1493905 FT /note="PS01078 Molybdenum cofactor biosynthesis proteins FT signature 1." FT CDS 1494319..1494654 FT /transl_table=11 FT /locus_tag="BB1397" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1016" FT /protein_id="CAE31895.1" FT /translation="MKARFALLALGLALAGCANVKDIRDREPAFYGSPQRSAQEYAACV FT SAAWKGLGVPVEQREIRNGYELVSRGSLGVDAVLTTTTWQGKTDASLSTRLPQSGQQLV FT DAANLCL" FT misc_feature 1494319..1494378 FT /note="Signal peptide predicted for BB1397 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.939 between residues 20 and 21" FT misc_feature 1494337..1494369 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1494651..1495511 FT /transl_table=11 FT /locus_tag="BB1398" FT /product="putative peptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1017" FT /protein_id="CAE31896.1" FT /translation="MSAAARLWRGAWLALALLAAQGAQAQGYISRKLSAPVPGGVAVVD FT LGQAAQAPEVTYRGRPVMVLREADGPWIAVVGIPLAARPGSEAISVRSPGGAARSIAFD FT IGAKTYTAQHIKLKNQRQVTPNPDDLKRIERELAEQTQAYRIFRAGVTPSNVLLDRPVP FT GRLSSPFGLRRFFNGQERNPHSGLDFAAAAGTPIKAPAAGRVVLVGDYFFNGKTVFVDH FT GQGFISMFCHMSEIDVKVGDEVPRGGVVGKVGATGRATGPHLHWNISLNDARVDPAIFI FT GAFKP" FT misc_feature 1494651..1494725 FT /note="Signal peptide predicted for BB1398 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 25 and 26" FT misc_feature 1495242..1495490 FT /note="HMMPfam hit to PF01551, DE Peptidase family M23/M37, FT score 6.9e-26" FT CDS complement(1495528..1495809) FT /transl_table=11 FT /locus_tag="BB1399" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1018" FT /protein_id="CAE31897.1" FT /translation="MTDKHETLREAADRLNSARRAFGLGEDGLRLLRRSREAFINSLRN FT TGLTYAQAQVKYDNCLDEQQQLHQQAIHELQYAERLHRQLLAELEQTA" FT CDS complement(1495883..1496146) FT /transl_table=11 FT /gene="infA" FT /locus_tag="BB1400" FT /product="translation initiation factor IF-1" FT /note="ortholog of Bordetella pertussis (BX470248) BP1019" FT /protein_id="CAE31898.1" FT /translation="MAKEELIELNGIVDEVLPDSRYRVKLDNGIEVGAYASGRMRKHRI FT RILAGDRVTLEMSPYDLTKGRINFRHKDERSGPPSRPPQHRR" FT misc_feature complement(1495931..1496143) FT /note="HMMPfam hit to PF00575, DE S1 RNA binding domain, FT score 0.00034" FT CDS complement(1496509..1496913) FT /transl_table=11 FT /locus_tag="BB1401" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1512" FT /protein_id="CAE31899.1" FT /translation="MLNGSCLCGRVAYTVDGPLADVVNCHCAMCRKAHGAAFRTRATVR FT AEHFAFVRGEGDITWYSSSPGSYRGFCSACGTPLLSRFDQTPDVYALPLGALDDDPGVK FT AACHVYVAHKAPWHDITDDLPRHPEGRPGH" FT CDS complement(1496987..1498186) FT /transl_table=11 FT /locus_tag="BB1402" FT /product="formate dehydrogenase" FT /EC_number="1.2.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1513" FT /protein_id="CAE31900.1" FT /translation="MAKILCVLYDDPVGGMPATYARDSLPAIARYPGGATLPTPLALDF FT TPGHLLGCVSGELGLRPFLQARGHTLVVTADKDGPGSVFERELPDADVVISQPFWPAYL FT TAARIAKAPRLKLAITAGIGSDHVDLQAAAQHGLTVAEVTYSNSISVSEHVVMMVLALV FT RNYLPSYQCVLDGGWNIADCVARSYDLEGMQVGVVGAGRIGSAVLRRLKPFDVGLHYTD FT QHRLPAATEQELGARYHPDAAALAGACDVISLHCPLHPGTEHLFDAAMLARMKRGAYLI FT NTARGKICDRDAVVQALASGQLAGYAGDVWFPQPAPRDHPWRSMPHHGMTPHISGSSLP FT AQARYAAGTREILECWLDGRAIRTEYLIVDQGRLAGAGAHAYTPGDTTAGSEDAARFHP FT " FT misc_feature complement(1497188..1497748) FT /note="HMMPfam hit to PF02826, DE D-isomer specific FT 2-hydroxyacid dehydrogenase, NAD binding domain, score FT 1.4e-83" FT misc_feature complement(1497317..1497367) FT /note="PS00671 D-isomer specific 2-hydroxyacid FT dehydrogenases signature 3." FT misc_feature complement(1497521..1497604) FT /note="PS00065 D-isomer specific 2-hydroxyacid FT dehydrogenases NAD-binding signature." FT misc_feature complement(1497752..1498045) FT /note="HMMPfam hit to PF00389, DE D-isomer specific FT 2-hydroxyacid dehydrogenase, catalytic domain, score FT 6.5e-28" FT CDS complement(1498220..1498546) FT /transl_table=11 FT /locus_tag="BB1403" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1514" FT /protein_id="CAE31901.1" FT /translation="MPLYDYACPQCGPFRAWRALREAGGPLACPQCGEHAPKAVTAPFL FT ADMNPAVRQAHARNEKSAHEPTVASRPAPGHDHGHGHGHAPVPAGLGPGPWVVSPHRSM FT VGHH" FT CDS complement(1498569..1499084) FT /transl_table=11 FT /locus_tag="BB1404" FT /product="putative transporter protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1515" FT /protein_id="CAE31902.1" FT /translation="MLLGLTLLYVGAVLFLNGLWLLEKIGDKEIWIINIFSGALTLLVS FT LRLAFGEDATPLSVRAAALTLLFTFTYIWVALNRYNGADGRGLGWYSLFVALTAVPVAL FT QTLAGATTLWGYWLGLNWVAWAVLWFMFFLLLVKKRPIARATGILTVLEGIVTGWIPGF FT LLLNGMLA" FT misc_feature complement(join(1498575..1498643,1498677..1498745, FT 1498758..1498826,1498845..1498904,1498932..1499000, FT 1499019..1499072)) FT /note="6 probable transmembrane helices predicted for FT BB1404 by TMHMM2.0 at aa 5-22, 29-51, 61-80, 87-109, FT 114-136 and 148-170" FT misc_feature complement(1498575..1499081) FT /note="HMMPfam hit to PF02293, DE AmiS/UreI family FT transporter, score 1.7e-56" FT CDS complement(1499143..1500369) FT /transl_table=11 FT /gene="fmdA" FT /locus_tag="BB1405" FT /product="formamidase" FT /EC_number="3.5.1.49" FT /note="ortholog of Bordetella pertussis (BX470248) BP1516" FT /protein_id="CAE31903.1" FT /translation="MAQTAFHVEFNKAPEDQATKTHNRWHPDIPMVEWFNPGDEFRVEC FT YDWTGGQISNDDSANDVRDVDLTRVHYLSGPFGVKGAEPGDLLVVDLLDVGALPESAWG FT FTGIFARENGGGFLCEHFPDARKACWDFHGIYTTSRHVPNVRWPGIIHPGLIGCLPDRA FT LLERANKREAALLATDPNRVPPLLAPPYADTALMGQMNGEAARKAGAEAWRTVPPREHG FT GNCDIKNLSRGSRVYFPVYVKGGGLSMGDIHWSQGDGEITFCGAIEMAGFLDIRVDLIK FT DGINKYGIVNPIFKPSPIEPHFAEYLVFEGISVDEHTGEQYYLDAHVAYRRACLNAIEY FT LKKFGYTGEQAYIILGTAPVEGRISGIVDIPNACCTLAIPTEIFDFDIRPNAAGPSAKV FT GKAKVAVTS" FT misc_feature complement(1499209..1500360) FT /note="HMMPfam hit to PF03069, DE Acetamidase/Formamidase FT family, score 1e-224" FT CDS complement(1500547..1501677) FT /transl_table=11 FT /locus_tag="BB1406" FT /product="putative LuxR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1517" FT /protein_id="CAE31904.1" FT /translation="MDAKPAAAAAAQTEDRLLHVLYGTLNDDTQWQQVLAALCRRFATR FT AAALAHYDFDAGAGRILYQAPADGPLQAIYDQGRPLNPWFLSKAPYLPGRILDSPELIA FT PEDFLQTDFYREILRPHGLFHRLCGVLARQRNHVWYLVLHRRKEQMPFDSADRARLRTL FT MPHLMTVFEVRTRCAAQVRLAGLLARIVQAYLPPVLVLDRDGAVLHGEIAADALPAQLR FT LVDGRLATRDAALQKALRDRIRRMAEAAQAGKPGRASLALDEADGAAPIQLTLCALGPD FT TNAQGGQAGALVGLLISDPGQDARQAMRRFADHFALSPAEEKVSALILQGMTPARVARS FT LHISEHTVRSHLKQIFRKTNTHRQAELMSLRERADY" FT misc_feature complement(1500553..1500738) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00196, DE Bacterial regulatory FT proteins, luxR family, score 0.0016" FT misc_feature complement(1500619..1500684) FT /note="Predicted helix-turn-helix motif with score FT 1725.000, SD 5.06 at aa 332-353, sequence FT MTPARVARSLHISEHTVRSHLK" FT CDS 1501912..1502454 FT /transl_table=11 FT /locus_tag="BB1407" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1518" FT /protein_id="CAE31905.1" FT /translation="MTAIVTAVCSSPGHTFSKPVREAITLVAGLGVAGDAHQGVMVRHR FT SRVRADPGQPNLRQVHLIHGELHDALQQAGFNVAEGTLGENITTRGIDLLDLPRDSLLY FT LGGQAIVRITGLRNPCAQLDRYQRGLMAAVLERDAAGGLVRKAGIMAVVEAGGDVRAGD FT PIEIVLPPPPHYRLGCV" FT misc_feature 1501996..1502427 FT /note="HMMPfam hit to PF03473, DE MOSC domain, score 1e-09" FT CDS 1502630..1503694 FT /transl_table=11 FT /gene="fba" FT /gene_synonym="fda" FT /gene_synonym="cbbA" FT /locus_tag="BB1408" FT /product="fructose-bisphosphate aldolase" FT /EC_number="4.1.2.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP1519" FT /protein_id="CAE31906.1" FT /translation="MALVSMRQLLDHAAEHGYGIPAFNVNNLEQVQAIMEAAAETDSPV FT IMQASAGARKYAGEGFLKYLIQAAVESYPHIPVVMHQDHGQSPAVCQGAIDLGFSSVMM FT DGSLKEDGKTIADYDYNVDVTKKVVDMAHKLGVTVEGELGCLGSLETMQGDKEDGHGAD FT GKLTMEQLLTDPEQAADFVRRTQLDALAIAIGTSHGAYKFTRKPTGDILSIARIKEIHA FT RLPNTHLVMHGSSSVPQDLLAEIREFGGDMKETYGVPVEEIQEAIKFGVRKINIDTDIR FT LAMTGAIRRFFAENPSKFDPREYLKPARAAAKAICVQRYTQFGTAGNASKIKPLPLADM FT AQQYAAGKLAQVVQ" FT misc_feature 1502633..1503616 FT /note="HMMPfam hit to PF01116, DE Fructose-bisphosphate FT aldolase class-II, score 1e-167" FT misc_feature 1502846..1502884 FT /note="PS00602 Fructose-bisphosphate aldolase class-II FT signature 1." FT misc_feature 1503044..1503079 FT /note="PS00806 Fructose-bisphosphate aldolase class-II FT signature 2." FT CDS complement(1503780..1504226) FT /transl_table=11 FT /locus_tag="BB1409" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1520" FT /protein_id="CAE31907.1" FT /translation="MSPAPAAGTPADIHTYTGGCLCQAVRFRATGPLLAAATCHCRECQ FT YLSGGAPAHALLLPAGALRLERGAPREYHYRSAAGRRVMRSFCADCGTPLFGHTEDAGY FT TVVRAGALDEPARFANQLTVWTASAPPWHAIDTAHPHFAGNAPS" FT CDS 1504452..1505333 FT /transl_table=11 FT /gene="purC" FT /locus_tag="BB1410" FT /product="phosphoribosylaminoimidazole-succinocarboxamide FT synthase" FT /EC_number="6.3.2.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP1521" FT /protein_id="CAE31908.1" FT /translation="MTSALHESSIKSLPLLGRGKVRDMYAVGDDKLLIVASDRISAFDV FT ILDDPIPGKGQVLTELTDFWLRKLAHILPNHSTGIQPEDVVAPDEVDQVRGRAVVVKRL FT KPILVEAVARGYLIGSGWKDYQASGSVCGIALPAGLQQASQLPEPIFTPAAKAEFGMHD FT ENVDFAHVVKEVGQEMAERIRDVTLRLYGEAARFAATKGIIIADTKFEFGLDDNGTLHL FT MDEVLTPDSSRFWPADGYRVGISPPSFDKQFVRDWLETQPWDKTPPAPRLPRDVLEKTA FT AKYREALDRLLA" FT misc_feature 1504485..1505279 FT /note="HMMPfam hit to PF01259, DE SAICAR synthetase, score FT 1.2e-118" FT misc_feature 1505064..1505090 FT /note="PS01058 SAICAR synthetase signature 2." FT CDS 1505616..1505912 FT /transl_table=11 FT /locus_tag="BB1411" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1522" FT /protein_id="CAE31909.1" FT /translation="MEKGTPHCKLPALKALVHAGQVRATYSALSGAAALGLDFSAMVEI FT VLALTPRDFHKSMTTHADHRIWQDVYCPVTAMGAVYLKLTVLDGVLIVSFKEL" FT misc_feature join(1505694..1505762,1505823..1505891) FT /note="2 probable transmembrane helices predicted for FT BB1411 by TMHMM2.0 at aa 27-49 and 70-92" FT CDS 1505915..1506316 FT /transl_table=11 FT /locus_tag="BB1412" FT /product="putative DNA-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1523" FT /protein_id="CAE31910.1" FT /translation="MKCPVCGAAALARDTRDVPYSYKGETITIAAVTGDWCPACGENVL FT DGAESARVSEAMLAFNRLVNARRVDPGFIVRVRRKLGLDQREAAALFGGGTNAFSRYEN FT GKTRPPLALVKLLRLLDRHPELLEEVRAD" FT misc_feature 1506134..1506295 FT /note="HMMPfam hit to PF01381, DE Helix-turn-helix, score FT 0.00022" FT misc_feature 1506161..1506226 FT /note="Predicted helix-turn-helix motif with score FT 1148.000, SD 3.10 at aa 83-104, sequence FT LDQREAAALFGGGTNAFSRYEN" FT CDS 1506336..1506572 FT /transl_table=11 FT /locus_tag="BB1413" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1524" FT /protein_id="CAE31911.1" FT /translation="MNYFVLLRYTRPSSHKGKREGSDEMLMMLPFLSGALAVWFGILGK FT RRPCFALWLVTLAVFAVGAHRYMTGPVPLPLAL" FT misc_feature join(1506411..1506464,1506483..1506542) FT /note="2 probable transmembrane helices predicted for FT BB1413 by TMHMM2.0 at aa 26-43 and 50-69" FT CDS 1506580..1507059 FT /transl_table=11 FT /locus_tag="BB1414" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1525" FT /protein_id="CAE31912.1" FT /translation="MIFLRNPGRGSRIVNTLVLLAVSLLLLSALAWQWLDGQAPCPLCL FT LQRAALVLIGVGLLLNVRMGPSPLHYAMVLAPALGGLAAAGWQLLSPEAGAAAPPWQGW FT AFLLFGAMLVYCTLMLAADRKWGDNALKKPVALPGALVMGLFLVAVLANAAGTVL" FT misc_feature 1506580..1506672 FT /note="Signal peptide predicted for BB1414 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.976) with cleavage site FT probability 0.702 between residues 31 and 32" FT misc_feature join(1506616..1506684,1506712..1506765,1506784..1506852, FT 1506880..1506945,1506982..1507050) FT /note="5 probable transmembrane helices predicted for FT BB1414 by TMHMM2.0 at aa 13-35, 45-62, 69-91, 101-122 and FT 135-157" FT CDS 1507243..1507722 FT /transl_table=11 FT /gene="purE" FT /locus_tag="BB1415" FT /product="phosphoribosylaminoimidazole carboxylase FT catalytic subunit" FT /EC_number="4.1.1.21" FT /note="ortholog of Bordetella pertussis (BX470248) BP1526" FT /protein_id="CAE31913.1" FT /translation="MGVIMGSSSDWEVMKHAVAMLQDFGVAHEARVISAHRMPQDMAEY FT GAAARARGLRAIIAGAGGAAHLPGMMAALTEVPVFGVPVPSRYLRGEDSLLSIVQMPKG FT VPVATFAIGEAGAANAALHAIATLATTDDALHARLVAFRARQTDAARAMKVPPEA" FT misc_feature 1507246..1507713 FT /note="HMMPfam hit to PF00731, DE AIR carboxylase, score FT 1.9e-65" FT CDS 1507725..1508915 FT /transl_table=11 FT /gene="purK" FT /locus_tag="BB1416" FT /product="phosphoribosylaminoimidazole carboxylase ATPase FT subunit" FT /EC_number="4.1.1.21" FT /note="ortholog of Bordetella pertussis (BX470248) BP1527" FT /protein_id="CAE31914.1" FT /translation="MTQSSTFDPIAPGDWLGLLGGGQLGRMFCHAAQSLGYKVAVLDPA FT DECPAGMVADLHIQAAYDDADGLARLAGRCRAVTTEFENVPADSLRALAARCRVSPAAD FT AVAVVQDRIAEKTFIAGQGIEVAPHAAIRARDDLLAAPQALFPGILKVARLGYDGKGQA FT RIASREEALAAFDEFGGVPCVLEALLPLEYEISVVIARGFDGASMVFPIARNVHRDGIL FT AVSSVTLGSADASHAARQVQATQAAQAIAQGLGYHGVLCVEFFVLGDGRLVVNEIAPRP FT HNSGHYTIDACVTSQFEQQARVMAGLPLGSADLLAPAVMLNILGDAWFEPGAHAPREPD FT WSAALAVPSAKLHLYGKREARRGRKMGHVTIVAATPEQARDDAARVARALGMAAPF" FT misc_feature 1507848..1508324 FT /note="HMMPfam hit to PF02222, DE ATP-grasp domain, score FT 3.4e-17" FT CDS 1508935..1509972 FT /transl_table=11 FT /locus_tag="BB1417" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1528" FT /protein_id="CAE31915.1" FT /translation="MNAADPAVAHAAACLLAGELAAFPTETVYGLGADAENPQAVARIY FT AAKGRPSNHPVIVHIAPEGDVDYWASDVPAAARQLIQAFWPGPLTLILKRAPHIGAAVS FT GGQDSIGIRCPSHPVAQALLRAFAAGKPNGQGGVAAPSANTFGHVSPTRAEHVRAEFPR FT EVAAGMPVLDGGDAEVGIESTIIDLSRLDQGVGPVLLRPGHISAAQVAAVLGMPVARPD FT AAAPRASGTLKAHYAPRTPLELLDAAQLPRALAAAPAGVRQAVVALAPAPAGLPAEVHW FT RMAPADPARYAQALYALLRELDRQAYARILVEQPPRSGDWDAVNDRIGRAAAAFSLDTT FT DLPGT" FT misc_feature 1509001..1509543 FT /note="HMMPfam hit to PF01300, DE yrdC domain, score 3e-39" FT misc_feature 1509547..1509945 FT /note="HMMPfam hit to PF03481, DE SUA5 domain, score FT 4.8e-09" FT CDS 1510109..1511131 FT /transl_table=11 FT /locus_tag="BB1418" FT /product="putative extracellular solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1529" FT /protein_id="CAE31916.1" FT /translation="MKRHIAMAAGALALALGAQAAHAGPTLDAVKKKGFVQCGLTDGVA FT GFSATNSKGEWEGMDVDICRAVAAAVFGDAGKFKGTALSTQQRFTALQSGEVDVLLRTV FT TLTQTRDTSLGLAAVAASFYDGQGVLVRKALGVKSAKELDEATICVQPGTTTELNLADW FT FRANGIKFTPVVIDKVTEVVRAFESGRCDAFTDDASQLAAVRATQVAKPDDFEILPERF FT SKEPLGPMVRQGDENWLGIVRWTLFALMEAEEYGITQQNVDEMLKSKNPNVLRILGVTP FT GAGKNMGLDEKWAYNAIKAVGNYSQIFERNVGKDSRLGLQRGVNALWSQGGAMYPWPIR FT " FT misc_feature 1510109..1510177 FT /note="Signal peptide predicted for BB1418 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 23 and 24" FT misc_feature 1510214..1510903 FT /note="HMMPfam hit to PF00497, DE Bacterial extracellular FT solute-binding proteins, family 3, score 2.5e-35" FT CDS 1511223..1512059 FT /transl_table=11 FT /locus_tag="BB1419" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1530" FT /protein_id="CAE31917.1" FT /translation="MTTVAPEDSPLFVAALARGLTLLAAFSEGRPAMTLPELAEATGLT FT KSAAQRFAHTLWTLGYLRKNPDSKKFSLSPQSLQLGMQYAQTSPLVLGGNPFLHSLNRT FT SQETCSLAEPDGLDMVYVARFATHKQMFVHMPVGMRIPMYCAAAGRAVLARLEPDRARR FT LLQQSPRAARTATTLTDLDALMAELAFTREHGYARSNGEYYPGDITISAAVLDNAGTPA FT GSVNISVPSSRWSFEEAQAVFGPQVLETAHAISASRTLGVMPPFYRMAPPSALNSD" FT misc_feature 1511319..1511384 FT /note="Predicted helix-turn-helix motif with score FT 1223.000, SD 3.35 at aa 33-54, sequence FT MTLPELAEATGLTKSAAQRFAH" FT misc_feature 1511433..1511993 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 1.1e-35" FT CDS 1512252..1513157 FT /transl_table=11 FT /locus_tag="BB1420" FT /product="putative arginase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1531" FT /protein_id="CAE31918.1" FT /translation="MGVPARRPAGEAALACVLGIPFDCGTHPFRVGARQGPDAIREQSR FT LLRPYDLARRAGVDNPVEFLRLLDLGNVACVPGDPQASYPAIEQAVAQVLQAGAIPITM FT GGDGAVTLPQLRAVARRWPGVAVLHFDSHTDTYPIAGYNTATTFTRAAEEGLIDLSHSF FT HVGTRGNSFMGGVIEYGREVGYTVIPYDDFDRDQAGTLARLRGQLGDRPVYLCFDMDIF FT DPSCAPGVCTPEWGGLSPKEGLNLLRALSGLNFVAFDVNTVSPPQDVGGATAFLAASVM FT QEFCALAAAAVQAYPQGRPD" FT misc_feature 1512282..1513118 FT /note="HMMPfam hit to PF00491, DE Arginase family, score FT 2.1e-31" FT misc_feature 1512630..1512656 FT /note="PS00148 Arginase family signature 2." FT CDS 1513184..1513975 FT /transl_table=11 FT /locus_tag="BB1421" FT /product="putative amino acid-binding periplasmic protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1532" FT /protein_id="CAE31919.1" FT /translation="MKIKAALGILATVGMLAHAGSAAARTLDEVRAAKSANVVTTASAP FT PHGFKNPASNQLEGIMVDVGAAVAKHLGVAMNLKDVPFSGLIPTLTSGRADVMSAPLFV FT TPERAKVIDFSAPVYEWGEGLVLREQNPDDIKRFEDLQGRRIGVLVDSVQFNMIKDMPD FT TKVSTYQDYSTLLADVRAGRIELGIIDPPSIIYQIRTKKIPGVKLATQYQPQKKWHVGL FT AVQKDNKALLDAVNAALAEMKRNGELAEIGRKWGVADLISK" FT misc_feature 1513184..1513255 FT /note="Signal peptide predicted for BB1421 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.549 between residues 24 and 25" FT misc_feature 1513289..1513957 FT /note="HMMPfam hit to PF00497, DE Bacterial extracellular FT solute-binding proteins, family 3, score 3.2e-53" FT CDS 1513998..1514690 FT /transl_table=11 FT /locus_tag="BB1422" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /note="ortholog of Bordetella pertussis (BX470248) BP1533" FT /protein_id="CAE31920.1" FT /translation="MNLETLRMYLTPLAEGTMWTLALFFCSAVLAVALGLLVCLCRLSK FT SRVLSRGARLYIDIIRGTPLLLQLFYIYYGMPELGVVINAFVAGVLGLTLNFGAYLAEL FT FRSGIQSVDSGQYEAARALGLNKVDRLRRVVLPQAVRTVFPALGNYALVLIKETSLVAV FT ISVYELMRAGEMLAGATFQALTVYTMVGAIYFAMCSVLAHLFRRSEKRLTVPGYWSGAG FT ENHDISKA" FT misc_feature 1513998..1514090 FT /note="Signal peptide predicted for BB1422 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.732) with cleavage site FT probability 0.599 between residues 31 and 32" FT misc_feature join(1514049..1514117,1514151..1514219,1514232..1514300, FT 1514433..1514501,1514544..1514612) FT /note="5 probable transmembrane helices predicted for FT BB1422 by TMHMM2.0 at aa 18-40, 52-74, 79-101, 146-168 and FT 183-205" FT misc_feature 1514319..1514552 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 7e-17" FT misc_feature 1514322..1514408 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1514712..1515464 FT /transl_table=11 FT /locus_tag="BB1423" FT /product="putative ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1534" FT /protein_id="CAE31921.1" FT /translation="MDACNQPAPVITLRGVSKWYGDFQVLRDLDLDVYQGERVILCGPS FT GSGKSTTIRLLNRLEEHEKGEIVVNGITLDGELRNIERIRADVGMVFQHFNLFPHLTVL FT ENCTLAPMRVKGLDEGEAARRAMQFLERVRIAQLADKYPGQLSGGQKQRVAIARALCMQ FT PRIMLFDEPTSALDPEMVKEVLDTMVELARDGMTMICVTHEMGFAREVGDRVVFMDGGS FT IVESDTPERFFSAPRSGRAQAFLGQILG" FT misc_feature 1514817..1515374 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.6e-65" FT misc_feature 1514838..1514861 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1515147..1515191 FT /note="PS00211 ABC transporters family signature." FT CDS 1515593..1517152 FT /transl_table=11 FT /locus_tag="BB1424" FT /product="putative thiamine-pyrophosphate-requiring enzyme" FT /note="ortholog of Bordetella pertussis (BX470248) BP1535" FT /protein_id="CAE31922.1" FT /translation="MNGADSLCDTLLANDIDVCFANPGTSEMHFVAALDRKPRMRCVLG FT LFEGVVTGAADGYARMADKPAATLLHLGPGLGNGLANLHNAKRARTPMVNVVGDHATYH FT VQYDAPLTSDVEAVAQPMSHWVGRIRDAASVAAQTSEAIQVARQEPGNVSTLILPADAA FT WTDLPDDTPAPQPVRQAPQAQADAQAIRAAAQAIRSGQATTLLLGGAALRGRALAAAGR FT IAHATGVRLAAETSSRRTERGANRPPVVRLPYPVDLAVAFLKDVRHLVLVGSRSPVAFF FT AYPGKPSLLAPQECDQIVLAEPEQDLHHALEWLADELGIPADAPQTRPAALTEAVPAEG FT RLTSAAVNRVAAALLPDNAIVCDESITQGREFGIYSVHSAPHDWLQLTGGAIGIGLPLA FT TGAAVACPDRKVVLLQADGSGMYTVQALWTQARERLDCLTIIYANRTYATLHGEMKNVG FT VIQPGENAKRMLDLVDPHIDWVQVSQGLGVEAVRVDTVEGFTQAMRAALARKGPFLIEA FT VI" FT misc_feature 1515593..1516105 FT /note="HMMPfam hit to PF02776, DE Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 1.1e-12" FT misc_feature 1516601..1517143 FT /note="HMMPfam hit to PF02775, DE Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 2.1e-11" FT CDS 1517184..1517729 FT /transl_table=11 FT /locus_tag="BB1425" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1536" FT /protein_id="CAE31923.1" FT /translation="MPPRNTRAARLVYPAALARLGSHGLPAAFQQGRSMKFADLRAGMV FT ITGGPLQVTEAEILEFARKFDPQWFHTDVQRAAEGRWGGLIASGWHTCALAMRMAVDAI FT LHDSESFGSPGLGEVSWRVPVRPGDTLTLHARVQGARVSASRNDLGIVNWAWVVDNQHG FT ETVLELDATSLFDLSGDS" FT misc_feature 1517289..1517663 FT /note="HMMPfam hit to PF01575, DE MaoC like domain, score FT 1.3e-05" FT CDS complement(1517869..1519125) FT /transl_table=11 FT /gene="gcdH" FT /locus_tag="BB1426" FT /product="glutaryl-CoA dehydrogenase" FT /EC_number="1.3.99.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP1537" FT /protein_id="CAE31924.1" FT /translation="MPRPHIHDPDLSFSYLHWSTRMSSTPSFHWQDPLLLDQQLTEEER FT MVRDAAVAYSQDKLAPRVLEAFRHEKTDPAIFAEMGELGLLGATIPTEYGGAGLNYVCY FT GLIAREVERVDSGYRSMMSVQSSLVMVPINEFGSEAQKRKYLPKLAAGEWIGCFGLTEP FT NHGSDPGGMETRATKTPDGYKLTGNKMWITNSPIADVFVVWAKCVGGDFDGKIRGFILE FT KGMKGLSAPAIHGKVGLRASITGEIVMDEVEVSEEQMMPGVSGLKGPFTCLNSARYGIA FT WGALGAAEACWHTARQYTMDRKQFGRPLAANQLIQKKLADMQTEITLGLQGCLRLGRMK FT DEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGT FT HDVHALILGRAQTGLQAFY" FT misc_feature complement(1517890..1518336) FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.1e-46" FT misc_feature complement(1517959..1518018) FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT misc_feature complement(1518346..1518651) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 3.9e-16" FT misc_feature complement(1518655..1519008) FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 2.7e-20" FT CDS complement(1519142..1520836) FT /transl_table=11 FT /gene="ilvG" FT /locus_tag="BB1427" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP1538" FT /protein_id="CAE31925.1" FT /translation="MTTANHSTPASRLGGHILVDQLAAHGVKHVFCVPGESYLAVLDGL FT HDASIEVTVCRQEGGAAMMADAHGKLTGEPGICMVTRGPGASNALAGVHIAKQDSTPMI FT LFVGQIERGMREREAFQEMDYRAVFGTQAKWVTEIDQVERIPELISRAFHVATSGRPGP FT VVIALPEDVLVETASVPDAPRYEVIDAAPAAGQMDQLAQMLAQAKAPVAILGGSRWNAQ FT AVQQFADFAQRHALPTAVSFRRQMLFPADHPCFIGDVGLGINPALLERIGEADLVLMVG FT GRMSENPSQAYTLLDIPVPRQKLVHVHPDSAELGRVYRANLAINTSPAAFCAALAQANG FT PSQPAWADDTQAMRASYLQWSDPAAIRTPGALQLGEVMAFLEKTLPADAIMANGAGNYA FT TWLHRFHRYTRYGTQLAPTSGSMGYGLPAAVGAKRIWPQKTVVCFAGDGCFLMHGQEFA FT TAVQYDLPIVVVLIDNGMYGTIRMHQEKHYPGRISATSLKNPDFAEYARAFGGHGERVE FT TTEQFAPAFERALASGKPAILHCLIDPETITPSTTLEKIRAAALKAQ" FT misc_feature complement(1519217..1519738) FT /note="HMMPfam hit to PF02775, DE Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 7.4e-47" FT misc_feature complement(1519490..1519549) FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT misc_feature complement(1519784..1520260) FT /note="HMMPfam hit to PF00205, DE Thiamine pyrophosphate FT enzyme, central domain, score 3.3e-05" FT misc_feature complement(1520294..1520809) FT /note="HMMPfam hit to PF02776, DE Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 1.5e-53" FT CDS 1520994..1521881 FT /transl_table=11 FT /locus_tag="BB1428" FT /product="probable LysR-familyt ranscriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1539" FT /protein_id="CAE31926.1" FT /translation="MRNGIPNLSALQAFEATARLGSFSRAAEELSLTHSAVYRQVASLE FT DRLGVQLFTRVRRRIVLTDHGAEYAGRIRHHLDQIEKDTFGLVSRTGMGRSIHIAVVPT FT LATTWLIPRLADFQRVQPDITVSLSVRTLPFQFKDQPFDGALYHGDGIWPGTQGVLLFP FT ERELVPVCAPELAERAPGRDDGALGGMMHLHLYSRPDAWRQWYAANQYAYGPQAAGGPR FT YDLFTMMLAAVQAGLGVGLMPRFLVQDALDAGTLVMPVPQALSVSQGYYFGYPQRSERS FT GALKAFEVWLKSAV" FT misc_feature 1521015..1521194 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.4e-21" FT misc_feature 1521054..1521119 FT /note="Predicted helix-turn-helix motif with score FT 1676.000, SD 4.90 at aa 21-42, sequence FT GSFSRAAEELSLTHSAVYRQVA" FT misc_feature 1521261..1521875 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.6e-25" FT CDS 1521919..1522851 FT /transl_table=11 FT /gene="xerD" FT /gene_synonym="xprb" FT /locus_tag="BB1429" FT /product="integrase/recombinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1540" FT /protein_id="CAE31927.1" FT /translation="MSSSAPLASQADLDAFIDAVWLEDGLAANTLAAYRRDLSAFAQWL FT ENPACHPGLATGASLREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLT FT PSDPCLTLVTAKQPPRLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSE FT LVSVKALDVSLNEGVVRVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADAL FT FVTARAEPMSRQAFWQLVKKYALAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLG FT HADISTTQIYTHVARERLKALHAAHHPRA" FT misc_feature 1521949..1522227 FT /note="HMMPfam hit to PF02899, DE Phage integrase, FT N-terminal SAM-like domain, score 8.6e-18" FT misc_feature 1522291..1522821 FT /note="HMMPfam hit to PF00589, DE Phage integrase family, FT score 1.5e-62" FT CDS 1522865..1523353 FT /transl_table=11 FT /locus_tag="BB1430" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1541" FT /protein_id="CAE31928.1" FT /translation="MSKNRHVSETPATQLLRQRKVAFTEHTYDYVDHGGAGEAARQLGL FT DPHAVVKTLIMEDEGGHPLVVLMHGDREVSTKNLARQAGLKKVAPCQPEVAQRHSGYQV FT GGTSPFGTRKRMPVWVEASVLDFPQIYVNGGRRGYLVGIAPQALVDLLGARAVQVALP" FT CDS 1523422..1524051 FT /transl_table=11 FT /locus_tag="BB1431" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1542" FT /protein_id="CAE31929.1" FT /translation="MTRPARYGGRLLSMETTMSKKLLMLVGDYAEDYETMVPFQTLLAV FT GHTVHAVCPDKKAGDTVATAIHDFEGAQTYSEKRGHNFTLNHDFAKVEPQHYDGLVIPG FT GRAPEYLRLDERVLDIVRHFDQAGKPIAAVCHGAQLLAAAGILKGRTCSAYPACAPEVR FT LAGGTYAEIGIDQAHTDGNLVTAPAWPAHPAWLAQFLAVLGTRISH" FT misc_feature 1523479..1524033 FT /note="HMMPfam hit to PF01965, DE DJ-1/PfpI family, score FT 1.4e-52" FT CDS 1524113..1524514 FT /transl_table=11 FT /locus_tag="BB1432" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1543" FT /protein_id="CAE31930.1" FT /translation="MSCTNRVPGILMCEIFIRANQRSYSVQARSLRLHGVATSVRLEQL FT FWDVLEEIAARDGMRVTQLIERLYDELVQYRGEAANFTSFLRVCCLRYQVLQAEGRIPA FT DATVPIRSLDAQAVLRGLPANLYDSRPLG" FT CDS complement(1524521..1525300) FT /transl_table=11 FT /gene="pbpG" FT /locus_tag="BB1433" FT /product="probable D-alanyl-D-alanine carboxypeptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1545" FT /protein_id="CAE31931.1" FT /translation="MPPAAASPAAEAAALRSSTAYVQDLETSTVLFAKNENVVRPIASI FT SKLMTALVVVDANLPMDEMIEITDDDVDTLKHTTSRLRVGTVLSRGDMLHLALMSSENR FT AAHALGRNYPGGMPAFVAAMNAKARSLGMLNTRFVEPTGLSSENVSSPRDLARMLRAAS FT QRPLIHRYSTDTEYEVEINNRTQTFRNTNLLVRKPDWDIKVSKTGFINEAGECLVMLAR FT INGRDMAIVLLDSQGKLSRIGDAVRIRRIVQNDVAML" FT misc_feature complement(1524527..1525288) FT /note="HMMPfam hit to PF00768, DE D-alanyl-D-alanine FT carboxypeptidase, score 1.7e-68" FT CDS 1525299..1525559 FT /transl_table=11 FT /locus_tag="BB1434" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1545A" FT /protein_id="CAE31932.1" FT /translation="MAAVAAALARAVRVRARMVDLRVLPFLALAVFLLLADFFLAVLAD FT FLLEAVLAGAFLAEAFLACWDLQAADLALVLHGSALAACAA" FT misc_feature 1525359..1525427 FT /note="1 probable transmembrane helix predicted for BB1434 FT by TMHMM2.0 at aa 21-43" FT tRNA complement(1525999..1526073) FT /note="tRNA Arg anticodon CCT, Cove score 58.52" FT CDS 1526320..1527522 FT /transl_table=11 FT /locus_tag="BB1435" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1546" FT /protein_id="CAE31933.1" FT /translation="MSTSEKPSLRILFIGTGVVLLAMGVRATFGLFMQPMGLAHGWGRE FT VFSMAFALQNLVWGAACIGMGILADRYGSGRTIVLGAVLYALGMIGTRFATDEATLYLT FT AGVLVGLGQAGTTFPVILPVVARSVPAAYRSTAMGIASAGGSLGQFLVVPAGQQLITGL FT DWPGALWVLSLLVAVGAPLAYFLRGKPGVHGGVQQSLGAAVRQAMAHPSFHFLSWSYFV FT CGFHTAFITLHLPAYVVDAGMKASHGATAIALIGLCNVIGSFYAGKLGGVYSKRLLLAA FT IYGLRAFGMLLLLAVPLTPLVLYVFAGWMGLFWLGTVPLTQGLIGQIYGLRYAATLSGI FT AFLGHQVGSFIGVWMGGAVYARTGNYDLVWWTGVALAVVAALLCLPVREQPLAQPAAAR FT A" FT misc_feature 1526320..1526442 FT /note="Signal peptide predicted for BB1435 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.773) with cleavage site FT probability 0.238 between residues 41 and 42" FT misc_feature join(1526344..1526412,1526455..1526523,1526542..1526595, FT 1526623..1526691,1526710..1526778,1526821..1526877, FT 1526962..1527030,1527058..1527126,1527163..1527231, FT 1527244..1527312,1527325..1527393,1527421..1527480) FT /note="12 probable transmembrane helices predicted for FT BB1435 by TMHMM2.0 at aa 9-31, 46-68, 75-92, 102-124, FT 131-153, 168-186, 215-237, 247-269, 282-304, 309-331, FT 336-358 and 368-387" FT misc_feature 1527025..1527060 FT /note="PS00136 Serine proteases, subtilase family, aspartic FT acid active site." FT CDS 1527726..1530386 FT /transl_table=11 FT /locus_tag="BB1436" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1547" FT /protein_id="CAE31934.1" FT /translation="MSDDFRTDFPSCTLRDLGELPAIDTLVLTVNNRLSRRLTLDLAAQ FT LRSERQVSELPRIMPLSAWLADCAAELAFDERYEVPAYRLSSFATQLVWREAIRLEEAD FT RALLDADQAARLALDADLLVDEWQAHVPAGAETDEYRGFSRWRARYRAMLGELDAEDAN FT QGYERVLEALRQGALRAPRHVALAGFVDISPRFARLLRALADGGADVVAWRDAVREPAW FT PQRFEAADRGAEWRAAARWAADRLRADPRGRYAIVSPQLEAEAPFARRVLGQALAGQDA FT PLPFNVAVGRALDEWPAVRAALAWLALLAEVAARGAAEPALFGAALLAGHCAGDLQEGP FT RHAALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMAIWQAGQRSDTCDAWAPRL FT KAALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGRLDGRAAVRLLASAARAG FT SFQPQRDPSARLDVLGLLEAEGGAWDGIWVLGLTDDVLPASPKPNPLLPLAVLRQVGAP FT RATPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPLIARAAPADWQPGADAQ FT AAVLEQEILDDSQGPPLEAERQSRGGLDVLDTQARNPLWAFVRHRLGGRAMAPYADAAT FT VSVRGQFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAARTELAGYPAALRE FT LECARAAAVLANWFDSEAQRQPFEVAQIEQEHSWQRGALALKVRLDRMDRLADGRALIV FT DYKTGAAPGRPESDWARARPVNLQLPFYASVLADGADTEVAGLMLAQIHARQVSAQGLA FT ADDLGIEGVTPVEQSKAFEGQPWPRILQRWRAAVEMLADEYANGYAANVALRQDDLKFC FT DAMPFLRLHLDDEDA" FT CDS 1530399..1533803 FT /transl_table=11 FT /locus_tag="BB1437" FT /product="putative nuclease/helicase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1548" FT /protein_id="CAE31935.1" FT /translation="MTEPERLPHDHAARRQALDPSRSFLVQAPAGSGKTELLTDRILAL FT LATVTRPEEIVAITFTRKAASEMHARVLHKLSLGAGEPPRSAHERRSWELARAALARDQ FT EQGWHLLDHPARLAIRTIDSFCAGLVRGMPWLSELGGMPDIADDARAHYEAAARATLEL FT ADEHDAVRALLAHLDVDVQAAKEAIAAMLGQRDQWMPLLQFGLDRDGLEASLAEALEHE FT LDSLCGQLPRGWSQALCGPARLAAAALAGSGDARLAALQDWDAPLPPMAEALDQWRALA FT HLLLTGTGALRSPKGVNKNLGFPAGCDHKEPFTAWLAACDGGAPWVRALAAVRDMPDAH FT FSDAQWDVLSAQLTTLALSVAQLRVQFARAGEVDFIEIAQRAAYALGSGDDPGELLLKL FT DASIRHLLIDEFQDTSQGQIDLLATLTAGWQDGDGRTLFLVGDPMQSIYRFRKAEVGLF FT LQVAEQGVGQIRPGFLQLTDNFRSQGGVVDWVNRVFAQLLPRANDADSGAIAYSPSTAF FT HETAPGEAVRFHPAWECGDAASAERQAEDIAVGLVRAALAEHEGSRHPVAILVRARSHL FT GSLTRRLAQEGIPCRAVELVPLGLRPVVADLVQLARALAHPADRLAWLSVLRAPWCGLT FT LTSLQRLFGADQQTPVPTLLERALRGAARSEGGQGSLFDAPAPGCLAEQALAPDEYRRL FT RAVAAILLDRANDAGLLPLAAWLEQLWRRLGGPGLYPGSSAASDAESLFQLIERLAPHG FT GLDAGLLDTAVARLFAAPQATGEQGTVEIMTMHKSKGLQFDTVILYGLHRAPRGDQAPL FT VRFEQSGGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDRLLYVAATRARQRLHL FT VAHVAVDAASGQARTPASASLLGRLWPHLPVPQPPDVAQDQAAATGEQPALVGEPLRRL FT AGAGLASLAARTLPREAAAGAYGGGQGAEHPSWQLEAGYDAAVGTLAHAWLARIGGDGP FT QHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDERGRWLLGQARAR FT REWPLIDAAGRVSVIDLALSTEDGWLIVDYKTGRPHEHETPEQFAIRMRQRHGEQLMRY FT CAQVTALDGRPARAALYFPRARAWIDL" FT misc_feature 1530426..1532519 FT /note="HMMPfam hit to PF00580, DE UvrD/REP helicase, score FT 2.8e-35" FT misc_feature 1530480..1530503 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1532094..1532129 FT /note="PS00962 Ribosomal protein S2 signature 1." FT CDS 1534372..1536603 FT /transl_table=11 FT /gene="dnaX" FT /gene_synonym="dnaZ" FT /gene_synonym="dnazX" FT /locus_tag="BB1438" FT /product="DNA polymerase III subunit Tau" FT /EC_number="2.7.7.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP1549" FT /protein_id="CAE31936.1" FT /translation="MYRDPGGSHHSWLRRPFCIPAGAFARRSVNQRAVPGARNWLYNPP FT MTYLVLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILA FT KSLNCENGITSKPCGQCRACTEIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAG FT RFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQ FT MPPDAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSLTDQAIAYSAGNLSEEA FT VRGMLGTIDQRHLVRLLDALASGDAAGVLAVADELAVRGLSYAGALADLAVLLSRVAIE FT QRVRGALPQDDPLTEDITRLAAALHPDAVQLFYSVAVHSRGELTLSPDEYAGFVMACLR FT MLALNGEAGPATAVQAPRADTTPRAAAPAAAAPAETRPEPTPALAPQAAAAPRAVARSE FT SKPQPAPEPEPEPEPEPEPASRPAATPVAATPPAVAEPEPVAAPAVQARAAEPAPVPPW FT EDLPEAVAAPAPAQPAAAPAPVVADDDGPPAWVDEAIPDEAGGGFAPEHSFTADPDDEF FT ETLAPAPAPAAMPAPRAPTPRRESGGRGRAARSRLADMSPAGWPELAARLPVTGLAAEL FT ARQSEWAGVQGDAVLLRVAVRTLAESESRVRLQTVLCEHFGQGLRLEIEVGVTGDGTAH FT AVAQIERAARQQAAEDAVAVDPFVQALVADFGGRVVPGSIRHVDNPPAA" FT misc_feature 1534624..1535196 FT /note="HMMPfam hit to PF00004, DE ATPase family associated FT with various cellular activities (AAA), score 0.00013" FT misc_feature 1534639..1534662 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1536650..1536976 FT /transl_table=11 FT /locus_tag="BB1439" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1550" FT /protein_id="CAE31937.1" FT /translation="MMKGQLAGLMRQAQQMQENMKKAQDALAEIQVEGAAGGGLVKVTM FT TCRHDVKRVAIDPSLLGEDKDMLEDLVAAAFNDALRKAEATSQEKMASVTAGMPLPPGM FT KLPF" FT misc_feature 1536677..1536952 FT /note="HMMPfam hit to PF02575, DE Uncharacterized BCR, YbaB FT family COG0718, score 1.2e-45" FT CDS 1537026..1537634 FT /transl_table=11 FT /gene="recR" FT /locus_tag="BB1440" FT /product="recombination protein RecR" FT /note="ortholog of Bordetella pertussis (BX470248) BP1551" FT /protein_id="CAE31938.1" FT /translation="MDPQLPEPEPLIALIEALRRLPGVGVRSARRMAYHLLQHDLQGAD FT MLGRALSGAVQHLRHCARCNSFTEDEVCATCANPKRDPGLLCIVETPADQNMIESSHGY FT RGLYYVLMGRIAPLEGVGPRELDFQRVIERACDGVVQEVILATNFTAEGETTAHFLGDA FT LSERGLKVTRLARGVPAGSELEYVDAGTIAWALMERRST" FT misc_feature 1537149..1537274 FT /note="HMMPfam hit to PF02132, DE RecR protein, score FT 8.5e-11" FT misc_feature 1537275..1537556 FT /note="HMMPfam hit to PF01751, DE Toprim domain, score FT 1.9e-08" FT CDS 1537709..1538959 FT /transl_table=11 FT /locus_tag="BB1441" FT /product="conserved hypothetical protein" FT /protein_id="CAE31939.1" FT /translation="MSALKGLKVLELGTLIAGPFAARMFGEFGAEVIKVETPHGPDGTG FT GGDPIRSWRHLHRGDSLWWTVQARNKQSIALNLKDPRAQEIARRLALEADVVVENYRPG FT VLEKWGLGYEQLRAINPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGLRYVSGHPDRP FT PVRVGISIGDSLAALHGVIGALMALRHRDATGGRWNGATGEQCQAGQGQMVDVALYESV FT FNMMESLVPEYDVAGVVRERTGGALPGIVPSNTYTTRDGQNIVIAGNGDAIFHRLMLAI FT GRSDLAHDPQLERNDGRARRATEIDSAIQRWCDTHTIEQALATLRAADVPVGKIYSVAD FT MFTDPQFLARGMIEQHHFPDGSPVKLPAVVPKLSETPGGTRWLGPRLGEHTEEVLKALG FT YDAAAIAELAQTGAIGR" FT misc_feature 1537928..1538539 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 2.2e-52" FT CDS 1539065..1540105 FT /transl_table=11 FT /locus_tag="BB1442" FT /product="putative exported protein" FT /protein_id="CAE31940.1" FT /translation="MSVTRRELLKLAGAAGAMSLAPAIVRAQKLEKAKVQIAVGGKPLI FT YYLPLTIAEVKGFFKDEGLDVSIADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQ FT FYRAFALQGRAPMIGVGVSKKNLPGYKGPADLKGRKIGVTAPGSSTNMVVNFFLAKHGL FT KASDVSFIGVGAGAGAVTALRSGQIDAISNTDPVVSMLETSGDIQIIVDTRTLKDTKEI FT FGGNMPAGCLYAPQAFVDANPNTAQALTNAIVRADKWIQKAGADEIAKAVPEGYLLGDP FT AVYKAAIGKSMEGLSPDGVIPEDGAATALKALAAFVPDFDAAKVDPAKAWTNEYTRRAN FT EKYPNG" FT misc_feature 1539065..1539145 FT /note="Signal peptide predicted for BB1442 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.988) with cleavage site FT probability 0.893 between residues 27 and 28" FT CDS 1540098..1540907 FT /transl_table=11 FT /locus_tag="BB1443" FT /product="probable ATP-binding ABC transporter protein" FT /protein_id="CAE31941.1" FT /translation="MAEAALSLEGITCTFIAREDRSRRYTAVQDTSLAVAPGEFVSVVG FT PTGCGKSTLLNVGAGLLAPSSGTVRVFGQALAGINERAGYMFQGEALLPWRSALENVVA FT GLDFAGVPRAEADERGREWMRRVGLGGFETRYPHQMSGGMRKRVMLAQTLIRDPDIILM FT DEPFSALDIQTRQLMENEVLDLWMAKRKAVLFITHDLDEAIAMSDRVIVLSAGPGTHPI FT GEFAIDLPRPRDVAEVRTHPRFVELHAAIWGVLREEVLKGYAQQKRA" FT misc_feature 1540209..1540745 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.4e-57" FT misc_feature 1540230..1540253 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1540515..1540559 FT /note="PS00211 ABC transporters family signature." FT CDS 1540911..1541705 FT /transl_table=11 FT /locus_tag="BB1444" FT /product="probable transmembrane permease ABC transporter FT protein" FT /protein_id="CAE31942.1" FT /translation="MSKLIKPGSLSLRFWQLLLFVVILLVWHAASRDPKVAFFFGEPLK FT VWGRIWAWFVSNGDIYGHLWVTLSETVLAFFIGTVSGLGFGLWLGLSPGASAILDPYIK FT AANSMPRVILAPIFGMWFGLGIWSKVALAVTLVFFIVFFNVYQGVREVSPTLLDNARML FT GARRRQLLRHVYLPSATSWVFSSLHTSVGLAFVGAVVGEYLGSASGVGYLILQAEGTFD FT VNTVFAGIVVLTAFALLLDYVVGMGEKRLMKWQPKSGETEKL" FT misc_feature 1540911..1541006 FT /note="Signal peptide predicted for BB1444 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.932) with cleavage site FT probability 0.726 between residues 32 and 33" FT misc_feature join(1540944..1541003,1541046..1541105,1541124..1541183, FT 1541280..1541348,1541487..1541555,1541583..1541651) FT /note="6 probable transmembrane helices predicted for FT BB1444 by TMHMM2.0 at aa 12-31, 46-65, 72-91, 124-146, FT 193-215 and 225-247" FT misc_feature 1541352..1541567 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 0.015" FT CDS complement(1541747..1542730) FT /transl_table=11 FT /gene="talB" FT /locus_tag="BB1445" FT /product="transaldolase B" FT /EC_number="2.2.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1451" FT /protein_id="CAE31943.1" FT /translation="MSAQIRLMPSQLEALRRHTVVVADTGDFEAMRALRPTDATTNPSL FT ILKAVQQEAYRPLLVQTARAHQGASPAEITDRLLVAFGRQILDIVPGRVSTEVDARLSF FT DTRATVERARGLIALYQAAGVPRERVLIKIASTWEGIQAARVLQAEGIRCNLTLLFCLP FT QAAACADAGVQLISPFVGRIYDWHKKNAGAEWVEDARRGANDPGVQSVSRIYRYYKRFG FT IETEIMGASFRNVDQILALAGCDLLTISPELLTRLSQTEGEVPAALSPQAGHDDADAVR FT LDGGEVAFRTQLNEDAMASEKLSEGIRLFVADARKLDALIESHGAA" FT misc_feature complement(1541768..1542673) FT /note="HMMPfam hit to PF00923, DE Transaldolase, score FT 1.3e-126" FT misc_feature complement(1542290..1542343) FT /note="PS00958 Transaldolase active site." FT misc_feature complement(1542593..1542619) FT /note="PS01054 Transaldolase signature 1." FT CDS 1543047..1544090 FT /transl_table=11 FT /gene="carA" FT /gene_synonym="pyrA" FT /locus_tag="BB1446" FT /product="carbamoyl-phosphate synthase small chain" FT /EC_number="6.3.5.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP1452" FT /protein_id="CAE31944.1" FT /translation="MAEVVFNTSMTGYQEILTDPSYAGQTVMLTYPHIGNTGVNPEDVE FT ANRVYAAGLVVRDCPARVSNFRATQSLPEYLNAQGIVAIAGIDTRKLTRILRESGAQGS FT CILVGEDAERAVELARGFPGMSGQDLAKVVSIKERADWTQGTWELGSGYTQPAQDRFHV FT VAYDYGVKSNILRLLADRGCRVTLVPAQTTAEEAFKLQPDGVFLSNGPGDPEPCDYAVD FT ATRAFLERKLPVFGICLGHQLMGLALGGKTVKMKTGHHGANHPVQDVQSGRVFITSQNH FT GFAVDAATLPANTRVTHISLFDGTLQGFELTDRPAFCFQGHPEASPGPHDIIVLFDKFI FT SLMAGQK" FT misc_feature 1543047..1543415 FT /note="HMMPfam hit to PF00988, DE Carbamoyl-phosphate FT synthase small chain, CPSase domain, score 3.6e-59" FT misc_feature 1543536..1544072 FT /note="HMMPfam hit to PF00117, DE Glutamine FT amidotransferase class-I, score 2e-66" FT misc_feature 1543743..1543778 FT /note="PS00442 Glutamine amidotransferases class-I active FT site." FT misc_feature 1543779..1543802 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1544101..1547343 FT /transl_table=11 FT /gene="carB" FT /gene_synonym="pyrA" FT /locus_tag="BB1447" FT /product="carbamoyl-phosphate synthase large chain" FT /EC_number="6.3.5.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP1453" FT /protein_id="CAE31945.1" FT /translation="MPKRTDLKSILIIGAGPIIIGQACEFDYSGAQACKALKAEGYRTI FT LVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLPTMGGQTALNCALDLAH FT HGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGVAHSMDEAWEVQRRIA FT ADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPTKELLIEESLLGWKE FT FEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASIAVLRE FT IGVDTGGSNVQFAVNPQNGRMIVIEMNPRVSRSSALASKATGFPIAKVAARLAVGYTLD FT ELRNEITGGATPASFEPTIDYVVTKVPRFAFEKFPQADARLTTQMKSVGEVMAMGRTFQ FT ESFQKALRGLEVGVDGLNQKTTDREKLQIELGEPGPERIWYVGDAFAQGFTLDEVHGLT FT RIDPWFLAQIKEIVDIELALEQKTLADLDYATLWELKRRGFSDRRLAFLLDSSESEVRK FT LRHQLNVRPVYKRVDTCAAEFATNTAYMYSTYEEECESQPTDRKKIIVLGGGPNRIGQG FT IEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKEN FT PVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNR FT TARTEAEALAHASEIGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLL FT DRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAGVHSGDSACSLPPYSLSAEVIAEIKR FT QTTMMAKALNVSGLMNVQFAIQGGDVYVLEVNPRASRTVPYVSKATGLQLAKIAARAMA FT GRTLADQGITREVVPPYFSVKEAVFPFVKFPGVDTILGPEMKSTGEVMGVGNSFGEAFV FT KSQLAAGVRLPDSGTVFISVRNQDKPRAVEVARGLHNLGFKLVATRGTAAEIEAAGIPV FT QVVNKVTEGRPHIVDMVKNGEVSLVINTVEERRNAIADSRTIRTQALANRITFFTTIAG FT ARAAVEGMQFMRQGLGLQVYPLQELHAGLTAQ" FT misc_feature 1544116..1544478 FT /note="HMMPfam hit to PF00289, DE Carbamoyl-phosphate FT synthase L chain, N-terminal domain, score 8.8e-55" FT misc_feature 1544140..1544172 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 1544482..1545213 FT /note="HMMPfam hit to PF02786, DE Carbamoyl-phosphate FT synthase L chain, ATP binding domain, score 1.9e-115" FT misc_feature 1544611..1544655 FT /note="PS00866 Carbamoyl-phosphate synthase subdomain FT signature 1." FT misc_feature 1545010..1545033 FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT misc_feature 1545376..1545747 FT /note="HMMPfam hit to PF02787, DE Carbamoyl-phosphate FT synthetase large chain, oligomerisation domain, score FT 9.6e-65" FT misc_feature 1545775..1546119 FT /note="HMMPfam hit to PF00289, DE Carbamoyl-phosphate FT synthase L chain, N-terminal domain, score 2.6e-22" FT misc_feature 1546123..1546794 FT /note="HMMPfam hit to PF02786, DE Carbamoyl-phosphate FT synthase L chain, ATP binding domain, score 7.8e-26" FT misc_feature 1546231..1546275 FT /note="PS00866 Carbamoyl-phosphate synthase subdomain FT signature 1." FT misc_feature 1546618..1546641 FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT misc_feature 1546936..1547232 FT /note="HMMPfam hit to PF02142, DE MGS-like domain, score FT 1.4e-31" FT CDS 1547495..1548259 FT /transl_table=11 FT /locus_tag="BB1448" FT /product="probable short chain dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1454" FT /protein_id="CAE31946.1" FT /translation="MQHVFITGASSGLGQALARRYAADGARLGLLGRRAQALEALASSL FT PGQHRCYAVDVRDRAALHAAAQDFIAHCGGRVDVVIASAGVSAGTLTEAGEDYAVFKEI FT VDTNLLATVATFEPFIAGMRAARAGRLVGIASVAGVRGLPGAGAYSASKAAVATYCESL FT RLELAQAGVRVVTIAPGYVKTAMTAHNPYAMPFLMEADAFAGRAHAAIARGVSYRVIPW FT QMGVVAKLMRLLPDAVYDRLARDAPRKPRRGQ" FT misc_feature 1547498..1548238 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 6.5e-39" FT misc_feature 1547900..1547986 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS complement(1548440..1549084) FT /transl_table=11 FT /gene="gpmB" FT /locus_tag="BB1449" FT /product="probable phosphoglycerate mutase 2" FT /EC_number="5.4.2.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP1455" FT /protein_id="CAE31947.1" FT /translation="MTEIWFIRHGETDWNRQRRLQGWQDIPLNESGREQARLLAERLRD FT TASEHPFAALYSSDLKRAHDTAASLSAALQLRVRTEPGIRERGFGVLEGLEMENLEQQA FT PQAAQAWRSRDPLRALEGGETLGQFQARIIATVDDLAARHAGERILAVTHGGALDIIWR FT HASGVPLDAPRYAALLNVSINRVAIAQRKWEVLGWGDVEHIGAETGNDVTP" FT misc_feature complement(1548491..1549081) FT /note="HMMPfam hit to PF00300, DE Phosphoglycerate mutase FT family, score 1.4e-28" FT CDS complement(1549095..1549994) FT /transl_table=11 FT /locus_tag="BB1450" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1456" FT /protein_id="CAE31948.1" FT /translation="MEIYQIRAFVTVARLGNLTKAAEALSLTQPAVTAQLKALEQSLGV FT ALFDRAAGRLSLAKAGEALLPTAEALLVLGAQFKSEARQLQGQLQGVIDLGVPSEQPDF FT LRLGELAAALRQRLPLVELKTHVLPSTALLEQVGTARLAGALTIVAHPPRGVTWHALRS FT VRYRIALPASLADTLKRAGWRDIAQLPWLDGPSGSHLHLLLRDMFERHGLAPRVVMQND FT DQSNLDALVRAGAGCALLREETALAGAAAGDFIVWGQARADATLGFIAPPEQAGEPMLV FT ALISMIQKIWKPGAAVAT" FT misc_feature complement(1549119..1549739) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2.6e-16" FT misc_feature complement(1549809..1549988) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 9.1e-22" FT misc_feature complement(1549854..1549946) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1549884..1549949) FT /note="Predicted helix-turn-helix motif with score FT 1603.000, SD 4.65 at aa 16-37, sequence FT GNLTKAAEALSLTQPAVTAQLK" FT CDS complement(1550042..1551127) FT /transl_table=11 FT /locus_tag="BB1451" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1457" FT /protein_id="CAE31949.1" FT /translation="MKKVSVECRNIRLSYGRNEVLKDISIHIEPGEFFALLGPSGSGKS FT TLLRLIAGFNRQSHGQLLVDGRDIGATPPWDRNIGMVFQNYALWPHMTVWDNVAFGLVE FT RRLPRAEIRDKVAAALELVGLADFGRRRPNQLSGGQQQRVALARTIVIEPQVLLLDEPL FT SNLDKKLRVQMRQDLLSLQRRLGITTIFVTHDQEEAMTTADRMAVLDHGVVQQIGAPST FT LFDYPVNRFVANFVGTMNVLEGEVRERSRGGVVLAVDGVGELHLPVNGDAPQAGRLAAS FT FRPHTVLIEMADGTGDARYVWLPGVVESSEFLGEFTRYQVQVGEQRLTADQHHLAGLSP FT FPVGAPVAVGLEPTQIRLLAA" FT misc_feature complement(1550492..1551037) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.6e-67" FT misc_feature complement(1550678..1550722) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1550993..1551016) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1551124..1552833) FT /transl_table=11 FT /locus_tag="BB1452" FT /product="probable permease component of ABC transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1458" FT /protein_id="CAE31950.1" FT /translation="MTSTGTFRLPAGPALAALLVLAFLALFLVFPVGTVFYTAFVNADG FT SFTLGHFGAFFNQPLMKEAFFNSLYVAGWSSLLASLIAVPLAYFTVRFEFRGALLIQTL FT GVLPLIMPPFVGAVAMQLIFGRSGSVNLLLDDWLGITLPFMDGLNGVIFVESLHYFPFI FT LMNLVVALRNIDGSMEEAAFNLGSRGFRLFCRIIFPLALPGYLAGTSLVFVKVFDDLGT FT PLVLGTTNMLAPQAYLRITQVGLEDPLGYVISVIMIGFSILALWLSARVLKGKDYSTLQ FT KGGNAIHKRRLRPVESVLAYAWIGAVLLLVLSPHLGVLLLSLASVWSYAPLPDGYTLAH FT YTAVFTESQGMIANTLLYCGLAAGVDVVLGTAIAYLMLRTRLPARQWLDFIASAALAIP FT GIVLAIGYLRTFRGVEIPGTGVLLTSSWVLIMIAYSVRRLPYALRSCVAALQQINVSLE FT EAAESLGASRLRTIRRIVVPLMAGGMLAGFVTSFITAAVELSATIMLVTRDSQAPMSYG FT IYLYMQSAAGRGPGAALGVLAVVAVGIGTYVSHLLVERASARQRPARSGESS" FT misc_feature complement(join(1551175..1551243,1551343..1551411, FT 1551526..1551594,1551607..1551666,1551700..1551768, FT 1551871..1551939,1552018..1552086,1552192..1552260, FT 1552321..1552389,1552459..1552527,1552561..1552629, FT 1552729..1552797)) FT /note="12 probable transmembrane helices predicted for FT BB1452 by TMHMM2.0 at aa 13-35, 69-91, 103-125, 149-171, FT 192-214, 250-272, 299-321, 356-378, 390-409, 414-436, FT 475-497 and 531-553" FT misc_feature complement(1551265..1551489) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 1.1e-12" FT misc_feature complement(1551400..1551486) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature complement(1552108..1552326) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 0.0092" FT misc_feature complement(1552237..1552323) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature complement(1552705..1552833) FT /note="Signal peptide predicted for BB1452 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.935 between residues 43 and 44" FT CDS complement(1552910..1554232) FT /transl_table=11 FT /locus_tag="BB1453" FT /product="putative regulatory lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2271" FT /protein_id="CAE31951.1" FT /translation="MQALRPVLAAAIMAACAPALAGTVTVITSFPKDLTQAYKAAFEKA FT HPDIKLEILNKNTVSGIAFVRETPAGQRPEVFWASAPDAFEVLGRDKLLAKAPDVANPA FT VPDKIGSYPINDPSGMYMGQALAGYGIIYNTRYIKANKLPAPVEWKDLLAPHWFGHVGI FT TAPSRSGTMHLTVETILQGEGWNDGWGTLLRMSGNASAVTERSFGVPDGVNNGQFGAGP FT VIDFFGLSSKYSKFPVDFVYPSETAIVPANIALIEGAKNTEEGKKFIAFTLSQAGQELL FT LEPKISRLPVLPYAALAGKIPPGYPDPAEIAKRSKVHFDADLSQARYYVVQSLFDQTIT FT FRLKELQAATKAIYDAEAKLGERAGQGKAAELLAQARQLAWTPLVDAQRAADPAFLKLF FT AGNKKDAAVNQQITQLEGEWNGKARANYEQAQKLAREAAAL" FT misc_feature complement(1553180..1554157) FT /note="HMMPfam hit to PF01547, DE Bacterial extracellular FT solute-binding protein, score 0.0015" FT misc_feature complement(1554146..1554214) FT /note="1 probable transmembrane helix predicted for BB1453 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(1554170..1554232) FT /note="Signal peptide predicted for BB1453 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 21 and 22" FT misc_feature complement(1554185..1554217) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1554784..1556097 FT /transl_table=11 FT /locus_tag="BB1455" FT /product="putative xanthine/uracil family permease" FT /note="ortholog of Bordetella pertussis (BX470248) BP2269" FT /protein_id="CAE31952.1" FT /translation="MSNTYFPRWRLADDTVPGAVIAPDERLSWPKNIAMGAQHVVAMFG FT STVLAPLLMGFDPNVAILMSGIGTLIFFLFVGGRVPSYLGSSFAFIGGVVAVTGYVAPG FT ANANIGVALGAIIACGLVYALIGLVVWAASARGNGARWIEAMMPPVVTGAVVAVIGLNL FT APIAAKGAMGSSGFEASMALMTILCVGGIAVYTRGMVQRLLILVGLVLACVIYAVCANG FT LGLGAPMDFAKVAAAPWFGLPSFAAPVFEPQAMGLIVPVAIILVAENLGHVKAVAAMTG FT QDLDRYVGRAFVGDGVATMVSGAVGGTGVTTYAENIGVMAVTRIYSTLVFVVAAVIALV FT LGFSPKFGALIQTIPGPVLGGMSVVVFGLIAIAGARIWVVNQVDFSDNRNLIVAAVTLV FT LGAGDFSVKLGDFSMNGIGTATFGAIILYALLGLARRR" FT misc_feature 1554871..1556013 FT /note="HMMPfam hit to PF00860, DE Permease family, score FT 2.9e-108" FT misc_feature join(1554943..1555011,1555030..1555098,1555111..1555179, FT 1555216..1555284,1555312..1555371,1555390..1555458, FT 1555528..1555596,1555657..1555725,1555768..1555836, FT 1555855..1555923,1556017..1556085) FT /note="11 probable transmembrane helices predicted for FT BB1455 by TMHMM2.0 at aa 54-76, 83-105, 110-132, 145-167, FT 177-196, 203-225, 249-271, 292-314, 329-351, 358-380 and FT 412-434" FT misc_feature 1555843..1555905 FT /note="PS01116 Xanthine/uracil permeases family signature." FT CDS complement(1556128..1557759) FT /transl_table=11 FT /locus_tag="BB1456" FT /product="methyl-accepting chemotaxis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2268" FT /protein_id="CAE31953.1" FT /translation="MLERIKVRTAMVAVFACFLAVLMLSGALTWRNAGRSAAEIEGLNQ FT VAVNQVDPLFEASGAALRARVALLEALANLQANHLDPVATLHQQAGAAQRQAATQFQRY FT VDVPKEPAAAELAATLQTRWRAYQSVLDELAAAVDAGQAEPALAAMNRAQQAEHAFQRD FT MEAFLARVQAHSDEVRSGAEDTHVVARWSAIALAALGVLLTLAGWLFVRRAVLRPLLEA FT GHHFDRIADGDLTARIEVRSANEIGALFAALKRMQEGLTRTIAVMRRGVDEINVGAAEI FT SAGNANLSSRTEEQAAALEETAATMEELATTVKQNADNAAQANQLAAVSMQVAQRGGES FT VAQVVQTMHGISASSRQIADIVTVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGE FT VRSLAQRAAQAAKEIKALIESSVATVRAGSQQVASAGGTMDEVVASVQRVADIMGEISA FT ASAQQASGIDQVSLAISQMDETTQQNAALVEQAAAAATAMEEQARHLAAAAAVFRTQGG FT AIIDVAAAPLAGPAGGHAALPPAAAH" FT misc_feature complement(1556215..1556913) FT /note="HMMPfam hit to PF00015, DE Methyl-accepting FT chemotaxis protein (MCP) signaling domain, score 2.6e-93" FT misc_feature complement(1556974..1557183) FT /note="HMMPfam hit to PF00672, DE HAMP domain, score FT 4.5e-13" FT misc_feature complement(join(1557130..1557198,1557676..1557732)) FT /note="2 probable transmembrane helices predicted for FT BB1456 by TMHMM2.0 at aa 10-28 and 188-210" FT misc_feature complement(1557649..1557759) FT /note="Signal peptide predicted for BB1456 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.305 between residues 37 and 38" FT CDS 1558389..1558865 FT /transl_table=11 FT /gene="greA" FT /locus_tag="BB1457" FT /product="transcription elongation factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2267" FT /protein_id="CAE31954.1" FT /translation="MSAIPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSEN FT AEYDAARERQGFIEGRISELEGTLSNAHLIDPTALDAEGRAVFGATVEIEDLDSGDRLT FT YQIVGDVEADIKSNLISVSSPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL" FT misc_feature 1558389..1558610 FT /note="HMMPfam hit to PF03449, DE Prokaryotic transcription FT elongation factor, GreA/GreB, N-terminal domain, score FT 1.2e-37" FT misc_feature 1558407..1558532 FT /note="PS00829 Prokaryotic transcription elongation factors FT signature 1." FT misc_feature 1558629..1558859 FT /note="HMMPfam hit to PF01272, DE Prokaryotic transcription FT elongation factor, GreA/GreB, C-terminal domain, score FT 6.4e-32" FT misc_feature 1558749..1558799 FT /note="PS00830 Prokaryotic transcription elongation factors FT signature 2." FT misc_feature 1558767..1558790 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1559220..1559822) FT /transl_table=11 FT /locus_tag="BB1458" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1079" FT /protein_id="CAE31955.1" FT /translation="MPILELTSRERSDLRSAAHPLRPVVLIGDNGLTDAVLKEIDLALT FT AHELIKVRAGGDDREAREAMLATICDTLSCAAVHHLGKTLILFRPDLRAAAAKAAADTP FT AKRRPSEPHTPKKMAAEGKRLTKTRPARKAAEAAAPAAGARPGRDDLNQAGRPARPSTR FT KASPGHAIPRRSGSALSLRAGARGGLAGRKPARANKR" FT misc_feature complement(1559556..1559768) FT /note="HMMPfam hit to PF01985, DE Uncharacterised protein FT family UPF0044, score 0.0024" FT misc_feature complement(1559571..1559594) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1559841..1560473 FT /transl_table=11 FT /gene="rrmJ" FT /gene_synonym="ftsJ" FT /gene_synonym="mrsF" FT /locus_tag="BB1459" FT /product="ribosomal RNA large subunit methyltransferase j" FT /EC_number="2.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1078" FT /protein_id="CAE31956.1" FT /translation="MAKNKFSKDWIHQHINDPYVKLAQQKGYRARAAFKLLEILDAEKL FT MRRGDIVVDLGSAPGSWSQVARERLAGPGGAVDGRIIALDLLPMEPVAGVEFIQGDFRE FT EAVLEQLARMVEGQPVDLVISDMAPNLSGVGVADSARIQHVCELALEFACAHLKPNGAL FT IVKAFHGSGFSQIVQSYKQRFKRVVERKPKASRDKSSETFLVARDLK" FT misc_feature 1559922..1560467 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01728, DE FtsJ-like FT methyltransferase, score 3.5e-58" FT CDS 1560711..1562597 FT /transl_table=11 FT /gene="ftsH" FT /gene_synonym="hflB" FT /gene_synonym="mrsC" FT /gene_synonym="tolZ" FT /locus_tag="BB1460" FT /product="cell division protein" FT /EC_number="3.4.24.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1077" FT /protein_id="CAE31957.1" FT /translation="MNNSFSKVAVWMVIALVLFTVFKQFDGRAQTQDGVSYTQFMDDAK FT AGRIRKVDVQGDVLYVTPDAGRPYSLTSPGDLWMVSDLLKYGVQVSGKAREEPSLLMSI FT FVSWFPMLLLIGVWIFFMRQMQGGGRGGAFSFGKSRARMLDENTNQVTFADVAGCDEAK FT EDVQELVDFLRDPSKFQKLGGRIPRGVLMVGSPGTGKTLLAKAIAGEAKVPFFSISGSD FT FVEMFVGVGAARVRDMFENAKKHAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQML FT VEMDGFESGQGVIVIAATNRPDVLDPALLRPGRFDRQVVVPLPDIRGREQILKVHMRKV FT PLSPNVDATILARGTPGFSGADLANLVNEAALFAARRNGRTVDMSDFEKAKDKIIMGAE FT RRSIVMPEEERKNTAYHESGHAIVARMLPKTDPVHKVTIIPRGRALGVTMQLPETDRYS FT MDKERLLNTIAVLFGGRIAEEIFMNQMTTGASNDFERATAIARDIVTRYGMTDELGPMV FT YAENEGEVFLGRSVTKTTHVSEATMQKVDSEIRRIIDEQYGVARKILEDNRARVEVMTS FT ALLEWETIDADQIDDIVNDRPPRPPKTPQGPSDTSDTPPTGLAAGGNTAAAV" FT misc_feature 1560711..1560803 FT /note="Signal peptide predicted for BB1460 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.702) with cleavage site FT probability 0.419 between residues 31 and 32" FT misc_feature join(1560723..1560776,1561008..1561076) FT /note="2 probable transmembrane helices predicted for FT BB1460 by TMHMM2.0 at aa 5-22 and 100-122" FT misc_feature 1561104..1561127 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1561275..1561838 FT /note="HMMPfam hit to PF00004, DE ATPase family associated FT with various cellular activities (AAA), score 3.9e-95" FT misc_feature 1561290..1561313 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1561587..1561643 FT /note="PS00674 AAA-protein family signature." FT misc_feature 1561854..1562486 FT /note="HMMPfam hit to PF01434, DE Peptidase family M41, FT score 6.6e-102" FT CDS 1562616..1563458 FT /transl_table=11 FT /gene="folP" FT /gene_synonym="dhpS" FT /locus_tag="BB1461" FT /product="dihydropteroate synthase" FT /EC_number="2.5.1.15" FT /note="ortholog of Bordetella pertussis (BX470248) BP1076" FT /protein_id="CAE31958.1" FT /translation="MANNFQCGRFEFDLERPLVMGIVNVTPDSFSDGGEHADTDSAIAH FT ARQLIDEGAHILDLGGESTRPGAQPVSAAEELARILPLIEGLRDCGVPLSIDTFKPEVM FT RAVLDAGADMINDIYGFRQPGAIDAVARSRCGLCVMHMKGEPRTMQEAPEYADLMGEIG FT VFLGARAQRLRAAWVDPRRIVLDPGFGFGKTMDQNYQLLRRLASLRVSSYPLLVGVSRK FT SMIGAATGKPVGDRLAGSVAAALACVARGAAIVRVHDVAATVDALKVWQAAEQGAVPT" FT misc_feature 1562670..1562717 FT /note="PS00792 Dihydropteroate synthase signature 1." FT misc_feature 1562679..1563401 FT /note="HMMPfam hit to PF00809, DE Pterin binding enzyme, FT score 1.5e-110" FT misc_feature 1562772..1562813 FT /note="PS00793 Dihydropteroate synthase signature 2." FT CDS 1563455..1564813 FT /transl_table=11 FT /gene="mrsA" FT /locus_tag="BB1462" FT /product="phosphoglucomutase/phosphomannomutase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1075" FT /protein_id="CAE31959.1" FT /translation="MSQRKYFGTDGVRGEVGGPVINAAFALRLGYAAGRVLAREHREHA FT SGRGRNRPQVVIGKDTRISGYMLESALEAGLSAAGIDVLLAGPVPTPAVAYLTRTLRLA FT AGIVISASHNPYQDNGIKFFSAHGMKLPDDIEAAIEQALDEPLGCVGSEELGRARRMAD FT AQGRYIEFCKSTFPHDLDLNGLKLVVDAAHGAAYNVAPHVFRELGAEVHAIGVSPDGFN FT INKGVGALHPESLAEEVRARGADLGIALDGDADRLQMVDGTGRIYNGDELLYAIVRERM FT QRGPVAGVVGTLMTNYGLERQLQQIGVGFERANVGDRYVLEQMQARGWLYGGESSGHLL FT CLDCHTTGDGTIAALQVLTALRRADATLAEWVADLRMYPQKMINVPLAPGLDWKTHDGL FT ARARGAVEAELAGRGRVLIRASGTEPKLRLMVEAEDEALAQASAQKLADSLGA" FT misc_feature 1563455..1563916 FT /note="HMMPfam hit to PF02878, DE FT Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha FT domain I, score 9.8e-62" FT misc_feature 1563770..1563814 FT /note="PS00710 Phosphoglucomutase and phosphomannomutase FT phosphoserine signature." FT misc_feature 1563950..1564252 FT /note="HMMPfam hit to PF02879, DE FT Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha FT domain II, score 1.3e-35" FT misc_feature 1564256..1564588 FT /note="HMMPfam hit to PF02880, DE FT Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha FT domain III, score 1.6e-18" FT misc_feature 1564475..1564492 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 1564598..1564807 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00408, DE FT Phosphoglucomutase/phosphomannomutase, C-terminal domain, FT score 2e-08" FT CDS 1565034..1565828 FT /transl_table=11 FT /locus_tag="BB1463" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1074" FT /protein_id="CAE31960.1" FT /translation="MLELVRIDTGSTAATAWPGAAPRTLAVGLARTAEEVEQIQRLRYD FT VFTEDMGAVFPQAQDGVEQDRFDQWCEHLMVRELDTGRVVGTYRILTPEKAREAGGYYS FT ESEFDLSGLGALREQLVEVGRSCTHADYRNGAVIMLLWSGLAEYLRRGGYEYVLGCASV FT SLRDDGVTAAEVWRNVARHLDDPALPRVRPLHRYPIERLNSTLPARVPPLIKGYLKLGA FT KVCGEPAWDPDFNAADFPVLLSMAGMDERYRRHFGLDREARR" FT CDS complement(1566134..1567627) FT /transl_table=11 FT /gene="ppx" FT /locus_tag="BB1464" FT /product="exopolyphosphatase" FT /EC_number="3.6.1.11" FT /note="ortholog of Bordetella pertussis (BX470248) BP1073" FT /protein_id="CAE31961.1" FT /translation="MDHLLAAVDLGSNSFRLSIGRVVQQDGTAQIYQIDRLKETVRLAA FT GLDQDKNLGEDALARALAVLERFGERLRSFHPSRVRAVATNTFRVARNTRDFLPRAERA FT LGFPIEVIAGREEARLIFSGVAHSLPPSLNRRLVIDIGGGSTEVIIGKGVEPNLMSSLY FT MGCVSFSRQFFGDGVVDSHQMKQAELAARREIEVIAKQYRKTGWKEAYGSSGTAKALYA FT ILTECGFSTRGITRAGLAKLKDRIIRSGRVIPAELPGIKLERADVLPGGLAIMSALFDE FT LNIDVMHTGDGALRLGVLYDLLGRDDEHDKRHESVQQFMKRYHVDANQARRVRQAALAL FT FDVLLPDGDGHERAELRLALGWAADLHEVGLSIAHNAYHKHTAYVLEHADMPGFSNDEQ FT ELLALLALGHHGKLSKLESLVANRSQWIAILCLRLAALLFRRREDITPLPLAVSIKGTS FT IVVRAQQAWLNRHPLSDFTLRAEDGEWSKVGFSFELLET" FT misc_feature complement(1566710..1567576) FT /note="HMMPfam hit to PF02541, DE Ppx/GppA phosphatase FT family, score 5.1e-86" FT CDS 1567863..1569944 FT /transl_table=11 FT /gene="ppk" FT /locus_tag="BB1465" FT /product="polyphosphate kinase" FT /EC_number="2.7.4.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP1072" FT /protein_id="CAE31962.1" FT /translation="MTSRPPSEPLLLNRELSLLKFNERVLAMAENPRVPLLERLRYVCI FT VSSNLDEFFEIRISTLKEQQRQTPTLVGPDGMTADEAFERVQVKVHALVASQYALLNDD FT ILPRLQAEGIVLHHASEWNAQQQEWAREVFNRDVMPLLTPIGLDPAHPFPRVYNKSLNF FT IVALSGADAFGRQASIAVVQAPRALPRLIKMPPEISGHPDGYILLTSLLRAFVGELFPG FT LEMLGCYQWRVTRNSDLFVDEEEVTNLRHALQGELSQRNFGAAVRLEIDKLTPPDLEAY FT LQREFSLAPEDTYRVSGPVNLSRLMQLCNSNTRPDLLFPAYLAPVPAPFDRVGEKPAEL FT FAAVAEQDRLLHHPYQSFQPVIDFLTAAALDPDVMAIKQTIYRTGEDSELMQILLAAAR FT AGKEVTVVVELMARFDEQTNINWAARLEEVGAHVVYGVVAHKTHAKMALVLRREKGRLR FT RYAHLGTGNYHPRTARLYTDFGLLTADPRLCEDMDKVFTQLTGLGARRSLKALLQSPFS FT LHDGMVSLIRAETRAARAGKRARIMAKMNSLLEVQVIEELYKASQAGVKIDLIVRGVCA FT LRAGVPGLSENIRVRSIVGRFLEHSRVFYFYADGAETVYLSSADWMDRNFFRRVEIAFP FT VYDKTLRKRVIDEAFTYALRDNQLAWQQQADGTYARVRNRREAYDVQEALIQRLGQDG" FT misc_feature 1567878..1569935 FT /note="HMMPfam hit to PF02503, DE Polyphosphate kinase, FT score 0" FT CDS 1570139..1571179 FT /transl_table=11 FT /gene="pstS" FT /gene_synonym="phoS" FT /locus_tag="BB1466" FT /product="phosphate-binding periplasmic protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1071" FT /protein_id="CAE31963.1" FT /translation="MFKRVFKQISIGAALSAAVFAAQAADVTGAGASFPYPIYAKWASD FT YKAATNNAVNYQSIGSGGGQQQIKAKTVDFGASDDPLKAEDLEKNGLLQFPAVIGGTVP FT VINVDGIAPGQLKLSGAVLADIFLGKVKKWDDAAIKALNPDLKLPSADIVVVHRSDGSG FT TTFGWTNYLSKVSPAWKEQVGEGKAVKWPTGQGGKGNEGVAAYVGQLKNSIGYVEYAYA FT KQNKLAWTQLQNKDGKFVQPEQKAFAAAAANADWKSAPGMGVVLTNEPGADSWPVTAAT FT FILVHKSQDKPVQGRAVLEFFDWAFKNGAKSAEALDYVPLPEAVTTEIRAAWGEVKGAD FT GKAVWQ" FT misc_feature 1570139..1570210 FT /note="Signal peptide predicted for BB1466 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 24 and 25" FT misc_feature 1570208..1571125 FT /note="HMMPfam hit to PF01449, DE Phosphate-binding FT protein, score 3e-137" FT CDS 1571314..1572330 FT /transl_table=11 FT /gene="pstC" FT /gene_synonym="phoW" FT /locus_tag="BB1467" FT /product="phosphate transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1070" FT /protein_id="CAE31964.1" FT /translation="MSAVMDNSVPLPSSTADSTTTGTPSPMKQNNNALMDALFKNLTRT FT FAFLVFILLAAIMISLIYGSRESLAKYGLSFLWLNDWDPVQQNYGAVVPIIGTLLTSFI FT ALLIAVPVSFGIAIFLTELAPTWLRRPLGTAVEMLAAIPSIIYGMWGLFVFVPVFQQYV FT QPALIATLGSVPIIGGLFAGPPFGIGIFTAGLILSIMIIPFIAAVMRDVFELVPPMLKE FT SAYGLGSTTWEVMWRVVLPFTKSGVIGGIMLGLGRALGETMAVTFVIGNAFRWSGSLFS FT PGNSIASALANEFNEAGGIQKSALLELGLILFLITTVVLAFSKMLLVRLSRAEGRQA" FT misc_feature join(1571437..1571505,1571608..1571676,1571719..1571787, FT 1571806..1571859,1571869..1571937,1572052..1572120, FT 1572235..1572303) FT /note="7 probable transmembrane helices predicted for FT BB1467 by TMHMM2.0 at aa 42-64, 99-121, 136-158, 165-182, FT 186-208, 247-269 and 308-330" FT misc_feature 1571947..1572177 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 1.8e-08" FT misc_feature 1571950..1572036 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1572352..1573209 FT /transl_table=11 FT /gene="pstA" FT /gene_synonym="phoT" FT /locus_tag="BB1468" FT /product="phosphate transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1069" FT /protein_id="CAE31965.1" FT /translation="MAQSAISMNNGVYRRRHLVNKVMLTISLGALLFGLFWLFWIIATL FT LVKGAPALSFTLFTEITPPPGQAGGLLNAVVGSVLMAGVGTLIGTPVGILAGTYLAEYG FT QRGWLAPATRFLNDVLLSAPSIIIGLFIYAVYVAQVGHYSGWAGALALSILVIPVVVRT FT TDNMLLLVPNSLREATAALGCPKWRMITLVCYRAAKTGIITGVLLAIARISGETAPLLF FT TALSNQFMSLNMNAPMANLPVVIYQYAASPFKDWNNLAWAGATLITLLVLGINILARNL FT FRKS" FT misc_feature 1572352..1572498 FT /note="Signal peptide predicted for BB1468 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.767) with cleavage site FT probability 0.395 between residues 49 and 50" FT misc_feature join(1572421..1572489,1572571..1572639,1572697..1572765, FT 1572775..1572834,1572925..1572993,1573129..1573197) FT /note="6 probable transmembrane helices predicted for FT BB1468 by TMHMM2.0 at aa 24-46, 74-96, 116-138, 142-161, FT 192-214 and 260-282" FT misc_feature 1572850..1573101 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 1.5e-14" FT misc_feature 1572853..1572939 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1573206..1574030 FT /transl_table=11 FT /gene="pstB" FT /gene_synonym="phoT" FT /locus_tag="BB1469" FT /product="phosphate transport ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1068" FT /protein_id="CAE31966.1" FT /translation="MIAAAGARGAPAIGSKMENTATAPNAKLEVKNLNFYYGKFHAIRN FT VNMSIRENKVTAFIGPSGCGKSTLLRTFNRMFELYPGQRAEGEILLDGENLLTSKTDIS FT LIRAKVGMVFQKPTPFPMSIYDNIAFGVRLFERLSKGEMDERVEWALSKAALWNEVKDK FT LHQSGNSLSGGQQQRLCIARGVAIKPEVLLLDEPCSALDPISTAKIEELIAELKHEYTV FT VIVTHNMQQAARCSDYTAYMYLGELMEYGATDQIFVKPARKETEDYITGRFG" FT misc_feature 1573362..1573940 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.6e-68" FT misc_feature 1573383..1573406 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1573716..1573760 FT /note="PS00211 ABC transporters family signature." FT tRNA 1574071..1574147 FT /note="tRNA Pro anticodon TGG, Cove score 87.76" FT CDS complement(1574264..1575265) FT /transl_table=11 FT /locus_tag="BB1470" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1166 SWALL:Q9I4H1 (EMBL:AE004547) (262 aa) fasta FT scores: E(): 0.00026, 26.66% id in 240 aa, and to FT Methanosarcina acetivorans predicted protein ma0077 FT SWALL:Q8TUJ0 (EMBL:AE010664) (288 aa) fasta scores: E(): FT 0.0024, 28.37% id in 215 aa" FT /protein_id="CAE31967.1" FT /translation="MMSDSISSARVEVSPTEPLVLSNGIRGIPRAIQSYTPEHYADIVA FT DRRTGSIALNAQAFFPEGNPGPVPMVILAPGSTGINTAHLKHAATLTSIGIGACVLDSF FT GPRGVSHTYHDQRLLTYSAGTYDVLAAAAHLMEWDRIDPRRIGATGPSRGGTAVLQAAM FT RPLADAVMGPDRALRAVLPMYPSGVFQFYAPDTGNTRIGIAMGDRDRWTLLSTVQGYAR FT AIRLCGGDVRVTVWPDAEHSFDREDVPLMYVEAGVEATMAPIYYLTERGYFCDSNGENE FT NLALTEKTLRERIHERYGRQGSWLGSQPGQPESFTAFLKTFFAESFGMSDRR" FT CDS complement(1575274..1576242) FT /transl_table=11 FT /locus_tag="BB1471" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 6.2e-30, 35.43% id in 302 aa, and to Rhizobium meliloti FT hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 5.6e-29, 33.33% FT id in 324 aa" FT /protein_id="CAE31968.1" FT /translation="MTKLVKRALIALMFLGGPAMAQPAYPTKPVRLIVPFTAGGSTDIL FT ARLLAKGLEEKWGKPVVVENRPGGSTVIGGAAVANAPADGYMLMLGSDTTYAINPHTMA FT KMPFDPLKDLSPVTRIASAPNWIVVAENSPFKTFDDLVAKAKAPGNGVNVSVNSPNGYA FT HLALNAWIRKNGLNVSIIPYAGASRAVPDLMGGNLDGVVDVVGGTIGFTKDGKLRPLTI FT LQSQPSPVLGGTLPFAGDAVRDLNVTTSFVLFTTGGTPPATLERIHEGVTQVMNQPAMK FT SRMDELALELVLSTPAETAEFTKAENARFKEIVANANLAKQ" FT misc_feature complement(1575286..1576110) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.7e-51" FT misc_feature complement(1576180..1576242) FT /note="Signal peptide predicted for BB1471 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 21 and 22" FT CDS complement(1576283..1576630) FT /transl_table=11 FT /locus_tag="BB1472" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1917 SWALL:Q9I2I7 (EMBL:AE004617) (115 aa) fasta FT scores: E(): 7.9e-16, 44.82% id in 116 aa, and to Rhizobium FT meliloti hypothetical protein ra1014 or sma1840 FT SWALL:Q92Y73 (EMBL:AE007287) (117 aa) fasta scores: E(): FT 5.4e-08, 39.08% id in 87 aa" FT /protein_id="CAE31969.1" FT /translation="MAIQVVRQDEIPQVLKHAGPVGIPLSQPPCLLRTAPRTINEKEHV FT ETGFWECSPGKFRREIVQGEIMHILSGACSFAPDDGVPIELKAGDTAFFPPQTTGTWEI FT RKTVRKVYVLV" FT CDS complement(1576648..1578006) FT /transl_table=11 FT /locus_tag="BB1473" FT /product="putative oxidoreductase" FT /EC_number="1.-.-.-" FT /note="Similar to Escherichia coli probable oxidoreductase FT OrdL or b1301 SWALL:ORDL_ECOLI (SWALL:P37906) (426 aa) FT fasta scores: E(): 2.8e-23, 30.66% id in 437 aa, and to FT Agrobacterium tumefaciens oxidoreductase OrdL or atu3404 or FT agr_l_2836 SWALL:Q8UAH0 (EMBL:AE009271) (424 aa) fasta FT scores: E(): 5.8e-34, 32.42% id in 404 aa" FT /protein_id="CAE31970.1" FT /translation="MIAIVAGNSAGVSRVANQPLEHEPSYWAATAEIEQPSPALEHDLD FT VDVAIIGAGYTGLSTAYHLKKDHGITATVVEANRIGWGCSGRNGGFAMIGVGKDTYNAW FT ISKVGLEQARKTFEFGRDAVRTLRTVLQENNINAASGNEGFLLTAHRRARISELIETQR FT QLKHYFGFDTEYLDAHDVRTHYLSGTQIFGALHYPEHFPIHPMRYAQGLGRRVRQLGVP FT IYENSPVNTWRRAGRLHELLTPRGVVRAKKVVIATNGYTPDGLHPIVRGRLMNVLSNIV FT VTAPLSEGQLAATRWQTHKMVVDTRNLRSYFRLLEDNRIMFGARGGISDTAASRATMKA FT WLLTQLAKQFPGLGAIGADYFWQGWVAIPRDKGPHIHVADNGSVAYWLGCTGTGVAMST FT HAGKLLADSLATERRPDVPALVGAPLPRYEIPALRKLYQRAAYSYFYLKDEFL" FT CDS 1578153..1578671 FT /transl_table=11 FT /locus_tag="BB1474" FT /product="putative DNA-binding protein" FT /note="Similar to Brucella melitensis transcriptional FT regulator, MerR family bmeii0372 SWALL:Q8YD05 FT (EMBL:AE009674) (182 aa) fasta scores: E(): 1.2e-22, 41.37% FT id in 174 aa, and to Pseudomonas aeruginosa probable FT transcriptional regulator Pa5301 SWALL:Q9HTQ3 FT (EMBL:AE004943) (182 aa) fasta scores: E(): 4.6e-22, 39.2% FT id in 176 aa" FT /protein_id="CAE31971.1" FT /translation="MQALRVSLSFSQRELARRAGVTHTTVAAIEKGRIDPSLGTLKSLL FT AACGVSMGDFFRSDRVESAVTEKHKISTVSTGGVHMRYVAPAQPGKLLQLTQELYDVGA FT DTGQKPLRHEGQEGGIVIRGTFELQLGDERHILKPGDSYYFDSTTPHRIRNIGEEEGEI FT INAASPPSF" FT misc_feature 1578174..1578317 FT /note="HMMPfam hit to PF01381, DE Helix-turn-helix, score FT 2.1e-05" FT misc_feature 1578180..1578245 FT /note="Predicted helix-turn-helix motif with score FT 1939.000, SD 5.79 at aa 3-24, sequence FT FSQRELARRAGVTHTTVAAIEK" FT CDS 1579051..1579749 FT /transl_table=11 FT /locus_tag="BB1475" FT /product="putative exported protein" FT /protein_id="CAE31972.1" FT /translation="MSDSPHSSRREFLLASGASAALTGIALTFHAHAKAAPVQLADYKP FT EYFTPEEWAFVLAATARLIPSEGEGPGALEAHVPIFLDRQLKGEYGSASNWYMQGPHDP FT AASPDRGWQTPLNPAQLYRKAIPAVNALCQLRWSKDFKDLAPEQQDETLTALQKGEAAL FT APELSIFFTTLLANTKEGYFADPMHGGNFGMQSWVYIGFPGARASYAEWVDQHNVKYPL FT GPVSIKGERA" FT misc_feature 1579051..1579149 FT /note="Signal peptide predicted for BB1475 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.932 between residues 33 and 34" FT CDS 1579753..1581522 FT /transl_table=11 FT /locus_tag="BB1476" FT /product="Putative gluconate dehydrogenase" FT /protein_id="CAE31973.1" FT /translation="MARTEKKKDVVIVGLGWTGAIAGMELAAEGLEIVALERGRDQNTV FT PEFKYPNQIDELTYGVRLVNMQHPSQQTVTVRRNDAETALPYRSMGSFLPANGVGGAGT FT HWNGLLWRPQPQEIQLRSYVKERWGESIIPEGMNLMDYPVTYDELEPFFTRFDEVAGIS FT GKAGNLKGKIQPGGNPFEGWRSSEYPMPPMPPTYDATKFRDAAQAMGYHPFPAPAGVAS FT TAYVNPYGMQMAPCNFCGFCERFGCYQYSKSSPQTAILDALKRKPNFSYRTHAEVLRIE FT SSADGKTATGVTYFDAAAQEEVFQPADLVILAAYQLNNVHLLLLSGIGEPYDPATNTGV FT TGKNYAYQMNGGVTMFFKDANFNPFIGHGSNGFCIDDFSVNQNDFGALGFIGGAYWRSG FT TFNGQPIRSMILPAGTPGWGAGWKKAIGQWYGHSMSIGTHGSHMAYRANHLDLDPTYKD FT PHGRPLMRMTFNWQDNDLRMNQYMKLKAGEVGKAMKPDLMQLGFKGPGAMYDVRPYQTT FT HNTGGHIMSRDPREGVVNRYCQAWDKHNVFVMGAGNFVQNTQYNPTGMVGALAYWTIHA FT IRTQYLRDPRPLV" FT misc_feature 1579753..1579833 FT /note="Signal peptide predicted for BB1476 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.931) with cleavage site FT probability 0.926 between residues 27 and 28" FT CDS 1581533..1582888 FT /transl_table=11 FT /locus_tag="BB1477" FT /product="Putative cytochrome C precursor" FT /protein_id="CAE31974.1" FT /translation="MKKALAILGALVALAVLATLALIYVPVKVTPPNEALAADWKAEPG FT RGKYVMRAGDCMACHTANGGSPLAGGRGIPTPMGTIWSSNITPDKETGIGDWTLDQFRA FT ALVDGIGVKEGHLYPAMPYENYRFMSESDIRALYDYLMKEVPPVRNEVQATQLSFPFNL FT RFGLRAWNWLALRGESAFKPASDDKLQTRGQYLVEGAGHCAACHSPRTAFMAQDGTVAR FT DAAFLSGGVLDGWTAPALRGADSAIATWSTAQVADYLATGRNTHATASGEMALAIEHSL FT QYLSDDDLNAMAAFLKGMDGKPVQDIPAQVAMPGPHAVPAAQADEAGQATARLLTAASP FT DMPLGARLYLDNCAGCHFVTGKGAAEIFPQLQGSAVVLGKDAGPLLSIILNGTAVPSTG FT RRPMRLAMQGYADRLSDEEVAVLASFVRSGWGNQASAVTQEEVAAARSAGKH" FT misc_feature 1581533..1581586 FT /note="Signal peptide predicted for BB1477 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.492 between residues 18 and 19" FT misc_feature 1581545..1581613 FT /note="1 probable transmembrane helix predicted for BB1477 FT by TMHMM2.0 at aa 5-27" FT misc_feature 1581656..1581967 FT /note="HMMPfam hit to PF00034, DE Cytochrome c, score 0.26" FT misc_feature 1581698..1581715 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 1582139..1582156 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 1582565..1582822 FT /note="HMMPfam hit to PF00034, DE Cytochrome c, score FT 0.099" FT CDS complement(1582900..1583640) FT /transl_table=11 FT /locus_tag="BB1478" FT /product="Putative carbonic anhydrase precursor" FT /protein_id="CAE31975.1" FT /translation="MSKKTTPTCNCLQHLLPLDSQEKPVRLSRRKLLSAGLMAGMAGGL FT GIVSPSPAHAQTTLTPEQALEKLRQGNERFARRAITSFQEDLDILQRRTAGKQEPFAAV FT LACADSRMPVELVFDQSIGKLFVARVAGNIATPAIIASLEYGAAILGIKALVVLGHVDC FT GAIKAAAANAGAPGQISALYPYIRPAINASSSTDITEMARQNAINQARLLRSASPVLAK FT LSDDGALRILPALYDVADGRVSWL" FT misc_feature complement(1582918..1583418) FT /note="HMMPfam hit to PF00484, DE Carbonic anhydrase, score FT 4.7e-07" FT misc_feature complement(1583476..1583640) FT /note="Signal peptide predicted for BB1478 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 55 and 56" FT CDS complement(1583738..1584685) FT /transl_table=11 FT /locus_tag="BB1479" FT /product="Putative regulatory protein" FT /protein_id="CAE31976.1" FT /translation="MTPPLTSIVSRLHIKHLRLLLAIYEHGSLLGAAKEVAISQPGASK FT ALQEIETTFGAALFVRTNRGLEANDLGLCVVRYARMIYTDLGHLRNELDAIQKGDGGRV FT AVGSIMGAIPLLTDAVSDLMQTHPGMSVEIVEDTSAELLGLLDSGRLDLAICRTVVTKS FT PELYESELLQPEELRVIASIGSPLALADELTLQDLAHCKWIVYRANMPMRILLEREFYD FT AGIRFPTNLLETTSPFATLALLRRNSSFVALASTDVASFFARNGLVSILPFQFTLRSEP FT YELVRRRGSLMSIGARLLKERLLERQDHHVDHVD" FT misc_feature complement(1583762..1584397) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.1e-32" FT misc_feature complement(1584467..1584646) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.4e-16" FT misc_feature complement(1584512..1584604) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 1584851..1585990 FT /transl_table=11 FT /gene="gbd" FT /locus_tag="BB1480" FT /product="NAD-dependent 4-hydroxybutyrate dehydrogenase" FT /EC_number="1.1.1.61" FT /protein_id="CAE31977.1" FT /translation="MALIQYLTHIQFDFGAVRLLQAECDRIGIKRPMVVTDQGIQAAGI FT LDAALSHLDRPDVVPVFDATPPNPNEEAVRQAVAVYAANDCDGIIALGGGSSIDLAKGV FT AVCATHEGALKRFAVIEGGLGHITAATAPVIAVPTTAGTGSEVGRGAILILDDGRKVGV FT ISPFVVPRTAICDPELTLKLPPALTAATGMDAIAHCLETFMSPLFNPPADGIALDGLAR FT AWRHIERATREPGDRDARMNMMSASMQGALAFQKGLGCVHSLSHALGGIDPRLHHGTLN FT AILLPAVIEFNAPAPTMARENKLNRIAAAIGLADGESVAGAVQGLTARLGLPTSLGQVG FT VARELFARIVDGALKDHSHKTNPRDASAEDYARMLDAAF" FT misc_feature 1584872..1585963 FT /note="HMMPfam hit to PF00465, DE Iron-containing alcohol FT dehydrogenase, score 1.1e-55" FT misc_feature 1585367..1585453 FT /note="PS00913 Iron-containing alcohol dehydrogenases FT signature 1." FT CDS 1586033..1587613 FT /transl_table=11 FT /locus_tag="BB1481" FT /product="Putative ketoglutarate semialdehyde FT dehydrogenase" FT /EC_number="1.2.1.39" FT /protein_id="CAE31978.1" FT /translation="MTISGAMMIGRSTVTGDGPRLYAFDPNENREIEPAFSSATRGLVD FT AACDLAARAFDRYRGLPLQARAGFLERIAANIERIGDELIQRAHSETGLPRARLEGERA FT RTVGQLRLFAEVVGSGHWLNATLDSPQPDRQPAPRPDLRMARMPVGPVAVFGASNFPLA FT FSVAGGDTASALAAGCPVVVKAHSAHLGTSELVARAVQQAGIECDMPDGVFSLVVGPGA FT EVGASLVAHPAIKAVGFTGSRQGGLALVDVAARRKEPIPVYAEMSSVNPFFVLPGALAR FT RAPALAAGLADSIALGAGQFCTNPGLIVLLDSEAARRFVGELAQALGGKAPQTMLTAGI FT ARAYGAALERRLGEPGVEQVLPPARGPSPCSARPALFAIDAGDFMAAALHHEEIFGPAS FT VVVYCRDRPQLHRLAESLEGQLTSTLHFEDADSDEVGRLLPILEKKAGRLIANGYPTGV FT EVSHAMVHGGPFPSTSNARATSVGASAIDRFLRPVCYQDFPSELVPAALQDGNPLALWR FT LRDGRMQQG" FT misc_feature 1586099..1587523 FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 8.7e-12" FT misc_feature 1586915..1586950 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS 1587712..1588170 FT /transl_table=11 FT /locus_tag="BB1482" FT /product="Hypothetical protein" FT /protein_id="CAE31979.1" FT /translation="MTASKQNDKQGTATTDDPPPRIMHVDDMEWETIRWPGETGKMLSH FT PTPEDPTLPNAGLLRLEPGAYHPWHRHDFAQVWYILEGEFTIGGVKCGPGTVLQHGDPH FT CEPELHTESGGVMFIVQYPGPTTGGRVIYDKRFNMDKRAAVEAERIDL" FT CDS 1588244..1588987 FT /transl_table=11 FT /locus_tag="BB1483" FT /product="Hypothetical protein" FT /protein_id="CAE31980.1" FT /translation="MTGLLSKHDFRVALQEAIAGKASAKAAFSQAWMDGTLQRHHFARW FT AENHYHYVGPFADYLGYIYNNARDEQDGVKDLLLQSMYEFRHLQEGEAMVSHTDLLIRF FT AQACGTTRERVESPQACNPITRGMQAWCYATAIRESPVVATAALLVGLASQIPQIYARQ FT IVPLRDPRVYGFSEHEVAFFALRITSDGAHAERGYRIVLDGATTPALQQRCLQFVRWGA FT EMRYAYAQAIYDQYVAPDLGARRVD" FT CDS 1589263..1590114 FT /transl_table=11 FT /locus_tag="BB1484" FT /product="Putative branched-chain amino acid transporter FT ATP-binding protein" FT /protein_id="CAE31981.1" FT /translation="MEHIAKLDETASPANARDGKAHATPAAQAAPAGTHGHVLVAQGLT FT KTFGGFTAVNNVDLRVRAQTIHALIGPNGAGKTTCFNLLSKFLQPSAGRIYYQGSDITR FT AAPEDIAGRGLVRSFQISAIFPKLTLGENVRVALQRKLGTSWHFWKPLASLRVLDEHVD FT RLLESVGLAERRDEPAGLLSYGRKRALELATTLALEPEVLLLDEPMAGMGREDIETVAA FT LIQKVAKGRTVLMVEHNLGVVARLADTITVLCRGEVLAECAYETVSSNPEVVAAYMGGA FT HA" FT misc_feature 1589452..1590030 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 6.8e-42" FT misc_feature 1589473..1589496 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1590107..1590811 FT /transl_table=11 FT /locus_tag="BB1485" FT /product="Putative branched-chain amino acid transporter FT ATP-binding protein" FT /protein_id="CAE31982.1" FT /translation="MPETHLQIGDLHAQYGESQVLHGMALTVGRGEVVTLLGRNGAGKT FT TTLRAIMGLLARRSGSVRFEARELMGLAPEAIARAGIALCPEERAIFSGLSVQENLMLP FT PVVRAGGMTVPEILALFPNLAERLKSPGTKLSGGEQQMLAIGRILRTGATLLLLDEPSE FT GLAPVIIEQIGLTIRKLKDRGISILLVEQNVNFATRVADRHYVVEHGEVIDAFSNAEIA FT SQSARLSAYLSV" FT misc_feature 1590197..1590736 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 3.1e-44" FT misc_feature 1590218..1590241 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1590509..1590553 FT /note="PS00211 ABC transporters family signature." FT CDS 1590815..1591702 FT /transl_table=11 FT /locus_tag="BB1486" FT /product="Putative high-affinity branched-chain amino acid FT transporter membrane protein" FT /protein_id="CAE31983.1" FT /translation="MNIESILGIPINAFMGQLLMGLMNGAFYAMLSLGLAIIFGLLNVI FT NFLHGAQFMVGAFIAWMLLAWAGLSYWVALLVAPLVVAIGAVFVERLFLRHLYRLDHLY FT GMLLTFGLMLMVEGLFRKSFGSSGLPYPNVIPGGMNLGFMFLPYYRAWVVAASLLVCLA FT IWLLIEKTRLGSYLRAATENPDMVRAFGIKVPVLLTLTYAFGAGLAGLAGVMAAPIYQV FT SPLMGSNLVILVFAVVVIGGMGSILGSILTGFSLGAIEGLTKLFYPQASATVIFLVMII FT VLLIKPTGLFGKAK" FT misc_feature 1590854..1591696 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 6.4e-32" FT misc_feature join(1590872..1590940,1590944..1591012,1591022..1591081, FT 1591118..1591177,1591250..1591318,1591394..1591462, FT 1591505..1591573,1591610..1591669) FT /note="8 probable transmembrane helices predicted for FT BB1486 by TMHMM2.0 at aa 20-42, 44-66, 70-89, 102-121, FT 146-168, 194-216, 231-253 and 266-285" FT CDS 1591710..1592723 FT /transl_table=11 FT /locus_tag="BB1487" FT /product="Putative branched-chain amino acid transporter FT membrane protein" FT /protein_id="CAE31984.1" FT /translation="MKNHTSSMLRPMLVLLACAMVAPAIVYPIFLMKVMCFAIFACAVN FT LLVGYAGLLSLGHSMFFGMSAYITAHTLKVWGWPFEAALPAAVLACSALGLIAGAIAIR FT RQGIYFAMITLALAQMVYFFCLQAPFTGGEDGLQNVPRPVVLGLFDTADDWTLYVVVLA FT IFLAAVAVYHRAIHSPFGEVAKAIRDNEPRAISLGYKVNRYKLLAFVISAALTGLAGGT FT KALVFQLASLTDVGWHISTEVVLMVLVGGMGTIIGPLVGAVLILAMQYYLAPLGEWVMV FT IQGAVLVTVVMIFRRGLVGEFEAWRVRMASMPGKPALPPRHAPGSFVVHSDAWSGK" FT misc_feature 1591710..1591832 FT /note="Signal peptide predicted for BB1487 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.430 between residues 41 and 42" FT misc_feature join(1591737..1591805,1591824..1591892,1591950..1592018, FT 1592031..1592099,1592172..1592240,1592325..1592393, FT 1592436..1592504,1592523..1592591) FT /note="8 probable transmembrane helices predicted for FT BB1487 by TMHMM2.0 at aa 10-32, 39-61, 81-103, 108-130, FT 155-177, 206-228, 243-265 and 272-294" FT misc_feature 1591773..1592618 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 1.4e-08" FT CDS 1592807..1594033 FT /transl_table=11 FT /locus_tag="BB1488" FT /product="Putative branched-chain amino acid transporter FT substrate binding protein" FT /protein_id="CAE31985.1" FT /translation="MSAKKNPPMKSAAALALLAGALCTAPAGAQVSGDVVKIGILNDQS FT GLYADLAGAGSVQAARMAIEEFGGQVLGKKIELVWADHQNKADIGAGIARAWFDREGVD FT AIADFSNSSVGFAVQGLANERKKITLVAAGSSDFTGKACSPFSTQWVYNSYSNGYGLAR FT LLASRGMDSVFLLTVDYTFGHAFANDVRKAVTENGGKVLGEVRFPLNSFDLSSYLLQAQ FT ASKAKLIVTAAAGSDMTSTVKQANEFGITPGQALAAPAVFITDVNSMGLQAAQGLQFVT FT AFYWDRTPDSRAWAEKFFARQKAMPSMTQAGVYSAVRHYLKAVEAAKTDDAVAVAAKMR FT ELPVRDMNIENGRVREDGQVMHDMYLVEVKKPDESRRAWDYYKVLTTVPADQAFQALAD FT SACPLVGKQ" FT misc_feature 1592807..1592893 FT /note="Signal peptide predicted for BB1488 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 29 and 30" FT misc_feature 1592888..1593976 FT /note="HMMPfam hit to PF01094, DE Receptor family ligand FT binding region, score 0.019" FT CDS complement(1594058..1594780) FT /transl_table=11 FT /locus_tag="BB1489" FT /product="Putative high-affinity branched-chain amino acid FT transporter ATP-binding protein" FT /protein_id="CAE31986.1" FT /translation="MNDTAAPLLTVEGLSAGYGELPVLHDVSLEVRRTEIVALVGSNGA FT GKTTLLRALSRVLPCTGSIVMNGRQLSRASPDQAFAGGMVQVPEGRQLFDRMTVQDNLL FT MGAYRRTARADIARDLDKVYGLFPRLAQRRGQLAGSMSGGEQQMCAMARALMAAPVLMM FT IDEMSLGLAPVVVDQLMAVLADIRREGVTTLLVEQDIHLALSSADRGYVMETGRIVHSG FT PASALLTDPKVRQAYLGI" FT misc_feature complement(1594133..1594681) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.1e-33" FT misc_feature complement(1594592..1594609) FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT misc_feature complement(1594637..1594660) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1594777..1595511) FT /transl_table=11 FT /locus_tag="BB1490" FT /product="Putative branched-chain amino acid transporter FT ATP-binding protein" FT /protein_id="CAE31987.1" FT /translation="MTAILEIRNVTRRFAGLVAVNQVSFTLAEGEILGLIGPNGAGKTT FT LVSLISGTLAPTHGEILYQGKPIGALPAYRRARLGIGRTFQIMRPFPGLSVLDNVAVGA FT LFGRGGGQPDLAKAREQARACLDFVGLGRAAGQRAEELGGPGRKRLELAKALAMQPRVL FT LCDEVMAGLNLVEIDEVIDVIRKVRATGISVLVIEHVIKAIKSLSDRLLVLHHGEKIAD FT GDPGEVLADAEVVQAYLGRRRT" FT misc_feature complement(1594861..1595424) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 9.2e-45" FT misc_feature complement(1595380..1595403) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1595508..1596455) FT /transl_table=11 FT /locus_tag="BB1491" FT /product="Putative high-affinity branched-chain amino acid FT transporter membrane protein" FT /protein_id="CAE31988.1" FT /translation="MKAWRAILALAAVAALAGLPWYGSDVMVQFGINTLLLAVLAQGWN FT IIGGYTGYASFGNSVFYGLGSYGVAIAMVQWELPFAAGLVFGVALALAFALLLGMPVLR FT LRGHYFAIATLALAQVMTAIVSNIELAGQNIGLVLPPLNNDPLFYELSLALLALATLAV FT AWLTRSRFGFGLIAIRENEEGAAVMGVNTTLYKVAAFALSGVFSALAGGIHAYWITFLD FT PESAFDIGLNVKMIIMAVFGGAGTVLGPVVGAFSLSAISELLSSEITSAAGLFFGVVIV FT AAVVLMPRGLSDLLRRYRKSGWRYFIENVRAHKL" FT misc_feature complement(1595532..1596389) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 4.7e-12" FT misc_feature complement(join(1595598..1595666,1595685..1595753, FT 1595796..1595864,1595958..1596017,1596060..1596128, FT 1596147..1596215,1596228..1596296,1596315..1596374, FT 1596384..1596437)) FT /note="9 probable transmembrane helices predicted for FT BB1491 by TMHMM2.0 at aa 7-24, 28-47, 54-76, 81-103, FT 110-132, 147-166, 198-220, 235-257 and 264-286" FT misc_feature complement(1596405..1596455) FT /note="Signal peptide predicted for BB1491 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.797 between residues 17 and 18" FT CDS complement(1596452..1597315) FT /transl_table=11 FT /locus_tag="BB1492" FT /product="Putative high-affinity branched-chain amino acid FT transporter membrane protein" FT /protein_id="CAE31989.1" FT /translation="MDLLAQILVNGILLGGLYAVMAQGLALVWGVLNIVNLAHGAFIML FT GAYVSWYLYTDLGVDPFLGLPVTAAVLFVLGYVLQRGLLNLVVRAPMFNTLLITFGLEV FT VLTYLAQLAFSADFRTINPPYAGDSYVLGPVTLPVARLAAFGVALALTLGMWLFLLHSR FT LGRAIRATAQNLIAARLYGVEPRHLYAVTFGLGLALAGAAGGLYGTVSQINPYIGATLT FT AKCFAISIIGGLDNPLGVMVGGLFLGIVESLTTLYVGPTFADVASFGILVLVLFLRPSG FT LLGRAA" FT misc_feature complement(1596458..1597306) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 7.3e-35" FT misc_feature complement(join(1596485..1596553,1596572..1596640, FT 1596683..1596751,1596836..1596904,1596974..1597042, FT 1597079..1597147,1597229..1597297)) FT /note="7 probable transmembrane helices predicted for FT BB1492 by TMHMM2.0 at aa 7-29, 57-79, 92-114, 138-160, FT 189-211, 226-248 and 255-277" FT CDS complement(1597343..1598551) FT /transl_table=11 FT /locus_tag="BB1493" FT /product="Putative branched-chain amino acid transporter FT substrate-binding protein" FT /protein_id="CAE31990.1" FT /translation="MSRKLMRALPALAFVMCTGASAAAPAPTVLLGASIQLTGPVANTG FT RYYRDAYQIAVDQINAAGGVKIGGVPHKLALKIYDNQSDVNLSVRQYTQLVTQDKANLL FT LGPFASNFALADSAVSEKYKVPMVQGGGASDQIFARKFKYIFGTLAPASNYFGSTVDML FT RALKPAPASVALLYADDAFDVSVAQGTRPLLKSAGLNVAMDERYSTNATDFNSLLSQIK FT SRKVDAVLVAGHETEILNFVRQAKSLAVAPKMYSFTVGVPSEDFRKALGADADYAFGMT FT AWLPSAALKDRWFGDAEQFARAYKAKYGYDPDYHAASGVADVEALAHAMESAGSLDPQK FT VRDALARSRFDSLYGPISFNAQGQIDLPQVVIQVQGDKLAEVYGAKGFITPPKYPMPAW FT DAR" FT misc_feature complement(1597379..1598473) FT /note="HMMPfam hit to PF01094, DE Receptor family ligand FT binding region, score 7.8e-05" FT misc_feature complement(1598483..1598551) FT /note="Signal peptide predicted for BB1493 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.672 between residues 23 and 24" FT CDS 1598775..1600154 FT /transl_table=11 FT /locus_tag="BB1494" FT /product="conserved hypothetical protein" FT /protein_id="CAE31991.1" FT /translation="MPTSAISASPDLAEQYAAWACALRYADAPRDVRQALRNCLLYNLA FT MALAVDPADDPLGDTLGAVARQAGAARLFGGRGARSAQDAAFINAALVTARGQNDTHPD FT VVAHIGCIVIPAVLALADEEQAAWPDVLDALLAGYELIPRLARGMAEATSRRGLRATPL FT YGVLGAAVACARLLRLPVPRAAAALSIATQYACGTMQPWVDGSQEWRLQVAKASRDAVS FT AALLARAGLQGARRALEGDSGFARAYAGGAAGPADFSGWRLPEMAFKPYPGCAFNQAPV FT HALRELLRRTGIDPGQVAALEVAMHPFDAGYPGIDAYGPFPSPSGAIMSAPFMLAATLQ FT DGQPGMAHFGRDYADGPLHARSARVRIRACETVARWACRVVATLEDGTRHEGACDGGFV FT LDWAQTVALGRAVSREWPGAGQPRRYAALARAVEDLEASARAGWPALQAAAYDQAVNDH FT A" FT misc_feature 1598805..1600103 FT /note="HMMPfam hit to PF03972, DE MmgE/PrpD family, score FT 2e-08" FT CDS 1600151..1600936 FT /transl_table=11 FT /locus_tag="BB1495" FT /product="Putative transcriptional regulator" FT /protein_id="CAE31992.1" FT /translation="MNPMTATMKGAQAVSRALSLLRHISHSHPHGIGIAELAIAAQLDR FT TTAYRLASSLVEFGLVERDPARNYRLGVEAMQLGLAAMRSAPVVERLRPIMRRLARRTE FT DTVFLVVRNGDYGHCLHSEEGSYPVKALVLQVGGMRVLGIGSAGSTLLANLPDDEIAAL FT YQRHQDEFDPRGLSLGKLRRLVQQTRRRGYADTADLVADGVSGVGMRFEFASGSQAALS FT VAAIRSRMPPERKAWIAQLIAEELQLGDFIPSYLQGVST" FT misc_feature 1600355..1600903 FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 3.4e-08" FT CDS 1601068..1601817 FT /transl_table=11 FT /locus_tag="BB1496" FT /product="Putative short chain dehydrogenase" FT /protein_id="CAE31993.1" FT /translation="MELGIRNQVAFVTGAGNGIGWACAQVLAREGCRVVVADIDAHAAG FT RAAQAIEQAGGSALALTLDVGRPQAVRDAVATVLAHWGAIEILLNNAGFSRDSAIGAMS FT DAQWTDVLTVNLSGAFHCIREIAPHMVARKFGRIVNMASRAHFGDINKANYSAAKAGVI FT GMTKALALELGEHGITVNAVAPGIIQTARVRNLPQFAGIESRSLGAMPIKRIGRPEEVA FT DAVAFLASARAAFITGEVLHISGGRYG" FT misc_feature 1601083..1601808 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 2.8e-80" FT misc_feature 1601491..1601577 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 1601884..1602858 FT /transl_table=11 FT /locus_tag="BB1497" FT /product="putative exported protein" FT /protein_id="CAE31994.1" FT /translation="MIKPLGLFAGAIALLLGASAAHAEPWPQSRQPIRLVIPFAPGGTT FT DILGRMMAEGLSRELKVSVIAENIAGANGNLGAQTVARAKPDGNTLMLGTPGPMIVNKY FT VYKNLAFDPKTAFAPVALVAELPNVLMVRPDLGVADVAGLVGLARKEKDGLTFGSPSVG FT SSGHVSTELFKLQAGVSAVHVPYKGSSPMLVDLMSGNTDFTIDQISSAIGFIQGGKIKA FT LAVTSRTRSAQLPDVPTLREAGFPDYEVSVWFCVAAPAGTPEDRIQALNAALNKVLAEP FT AVRERLASLGAQPLGGPAQDLARQILTEEKNIQAVTKVVSFDN" FT misc_feature 1601884..1601952 FT /note="Signal peptide predicted for BB1497 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 23 and 24" FT misc_feature 1602025..1602849 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.8e-89" FT CDS 1602910..1603758 FT /transl_table=11 FT /locus_tag="BB1498" FT /product="Putative hydrolase" FT /protein_id="CAE31995.1" FT /translation="MILMKDVRTDSVSAGGFRVVYHDCAPQADDAKTVVLLHGTGGSAE FT NNFWALFPMLAMRHRVVALDFVDPDGSGVPDARAYVEQALAVVETVSRGRAVHLVGYSF FT GAVIGALLAARHGRWVESLTLVAGWLKTDAQQRLRNAVWRGLYESGHEALAPFSVFTSF FT SQAFLNTRNEAELEALIQGVRNGPDRSRKMAFNRDVDIGDEVASIAAPSLVIGCTHDQM FT APVRHSRLLFGSIQDCRYAEINAGHGVVHERPSELFTMIDAFVREPQAWPAGHIVQNSH FT A" FT misc_feature 1603084..1603704 FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 4.3e-05" FT misc_feature 1603198..1603227 FT /note="PS00120 Lipases, serine active site." FT CDS 1603775..1605289 FT /transl_table=11 FT /locus_tag="BB1499" FT /product="Putative monoxygenase" FT /protein_id="CAE31996.1" FT /translation="MKEHDAAQGGTRTETEVLLIGTGFSGLGMAVALKREGRRDFIVLE FT RAGDVGGTWRDNHYPGAACDIQSHLYSYSFRPNPRWSRVYAPQPEILQYLRDTARDEGI FT LDHVRFGANVVRAAWDAAQAAWLVDTTAGRFKAQVLISAAGHLSDPSFPDIEGLASFRG FT AVFHSANWDHSYDLAGKRIGVIGTGASAIQIVPELARNAGQLTVFQRSAPYVIPRRDHV FT YSEAEKGLFARFPEAAQELRDELFWGNESRFPQRRQVPAFIEQVTAMALSHLRKQVPDE FT ALRAQLTPHYAIGCKRVLISNDYYPALQQPNVALETAGIARIDEQGVVLKSGGRVDLDL FT LVVATGFEAAELPIAERIHGRQGRRLSDQWRAGGQAFACTAVSGFPNFFLMLGPNTGLG FT AGSMIFMVETQINYIKGAVAFIFEHGAIVDPDPDAQRDYVESIYRRSAGTVWLDGGCSS FT WYLHPQSGKLTTLWPDFMTQFRKENGTFSRQGYQVALRAPHAAEQA" FT misc_feature 1603823..1605283 FT /note="HMMPfam hit to PF00743, DE Flavin-binding FT monooxygenase-like, score 1.1e-18" FT CDS 1605286..1606194 FT /transl_table=11 FT /locus_tag="BB1500" FT /product="Putative 3-hydroxybutyryl-CoA dehydrogenase" FT /protein_id="CAE31997.1" FT /translation="MSGAAETRIAVVGAGLMGHGIAQAFMVAGFPVSIWDPAEAARASA FT PQRIAAHLALLGMERPVTVRVCDTLASCVAGSQLVIEAVPEKLELKRELLAVLDELNPD FT AIVATNTSVLRITEIAADSARPERVVGTHWWNPPYLIPVVEVVRGERTGEDVARRVSVW FT LAQAGKTPVDVYRDVPGFVGNRMQFALLREAAWLVEEGVCSAETADLVARMTFGRRWAC FT VGPLRNADFIGLDLTCDILDYLAPSLSDCKQAPRLLRDKVAVRQLGAKSGQGVFEWEEG FT ERDETEAQLLRHLIAAAGKPG" FT misc_feature 1605292..1605819 FT /note="HMMPfam hit to PF02737, DE 3-hydroxyacyl-CoA FT dehydrogenase, NAD binding domain, score 2.3e-33" FT misc_feature 1605814..1605888 FT /note="PS00067 3-hydroxyacyl-CoA dehydrogenase signature." FT misc_feature 1605823..1606119 FT /note="HMMPfam hit to PF00725, DE 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain, score 5.5e-22" FT CDS 1606631..1607398 FT /transl_table=11 FT /locus_tag="BB1501" FT /product="Putative enoyl-CoA hydratase" FT /protein_id="CAE31998.1" FT /translation="MAIKVSQPDNGVVTLLMDRPAKHNAFTWEMYEAFGAACDALQADD FT SVRCVIVRGAGGAFCAGSDIGGFDENRSGVEQARAYAAFTLAMFDKFKHLRHPTIACIE FT GVCVGGGLEIAALCDIRIAQADARFGIPVNRIGLTLDHQELADLVAVVGHGVALEILLE FT GRVFGAQEALAKGLLSRVVDDAWSDADETARRIARLAPLSNRWHKQFIRQLQSGQPLTQ FT AQRDEAYACFDTQDYQIGSRAFLEKQRPQFIGR" FT misc_feature 1606667..1607179 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 2.2e-35" FT CDS 1607436..1608638 FT /transl_table=11 FT /locus_tag="BB1502" FT /product="Putative L-carnitine dehydrogenase-like protein" FT /protein_id="CAE31999.1" FT /translation="MTSDAATPLAGLKVLDLSQIMAGPYCTMVLADLGADVIKIEKPAG FT GDDSRQMGPYVKGESTCFAQINRNKRGVVLDLKDPQARDAVYELAKWADVVVENYRVGV FT TARLGVDYDTLSKINPRLVYCSISGFGQTGPYARHGGFDLVAQGLSGIMSMTGEPNGRP FT LKSGIAVYDVGAGITAAYAILAAYVNQLKTGKGQHIDIGLAECGLPWFVWEAAAYFAEG FT TVPQATGSRHRVDAPYQAIKTGDGYMVLGCANQRTWEKLCKEVLFRPELTEDARFLTNM FT DRLANIDMLEPLLEASFASAGTQEWIRRCNEAGVPCGPINNFKQAVEDPHYRAREMVAS FT LDHPVIGQMNVIGIPTKFSRTPGSLRKAAPLFGQDTDEVLRGIGLSDETIEQLKARGAA FT A" FT misc_feature 1607652..1608218 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 2.1e-70" FT CDS 1608725..1609963 FT /transl_table=11 FT /locus_tag="BB1503" FT /product="Putative ABC transport system, solute-binding FT protein" FT /protein_id="CAE32000.1" FT /translation="MTTSINASRRHFSQAMMALAAMGAAGPVFSQGRPAPFKVGALNSI FT TGAGGTYGPGMLEAIKIGIAEVNAAGGAAGRELKLYAEDDQTRPDAAVLAARKLVDIQH FT VDAMIGIWSSAVQLATLPITNAAGILSFNTCGAPEIRTEDKRDLVFQFYASNAIIGAAF FT AAIGQRLGYKRAAVLGYNNATMSAQANHFKAAWEKKGNQIVSSAIYEPNQATYRTEVEK FT AVAAKPDVIVLSSYTPDATILLKEWYQTGYECKFIMPGYSATPALIKALGPDVMRNIVS FT TANVPASDNQAYKAFVEKFQAVTKSPPEMFAAAAYDMVITLALAIEAAGPDAKPADLSA FT LVRQVSNPPGQKVSSFVQGRDLLRQKAKIDFDGASSSLDFDANGDTVPDFGIYEFDGKA FT FALKDVVPGATLM" FT misc_feature 1608725..1608814 FT /note="Signal peptide predicted for BB1503 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.969 between residues 30 and 31" FT misc_feature 1608809..1609945 FT /note="HMMPfam hit to PF01094, DE Receptor family ligand FT binding region, score 0.00018" FT CDS 1610001..1610876 FT /transl_table=11 FT /locus_tag="BB1504" FT /product="Putative ABC transport system, permease protein" FT /protein_id="CAE32001.1" FT /translation="MDTVLFANAIINGVIVGLLLALPALAITLVFGIARFPNAAAGDYM FT TFGAYATVAAQAFMGASLVGSAIVATLATGLLSLFFYFWVFRKLAQRSLVARLIASIGI FT AFAVRAAITFFAGHGQYTIQAPLQRAWNFGGIRILPLDVYILLAALLALAFMFGLLYLS FT PTGRRMRAVSDNPQLAAVGGIGVRKVMVILWGIVGVFSGLGGVLLGIKATVLPELGWEL FT LLPMFAAVILGGVGSPVGAVLGMIVFGIAQEAATLYIGSAYKIVIAFLVLLVVLLFRPQ FT GIMGRVQAVR" FT misc_feature 1610001..1610078 FT /note="Signal peptide predicted for BB1504 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.919) with cleavage site FT probability 0.645 between residues 26 and 27" FT misc_feature 1610016..1610864 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 5e-27" FT misc_feature join(1610037..1610105,1610190..1610258,1610277..1610345, FT 1610421..1610489,1610571..1610639,1610682..1610750, FT 1610769..1610837) FT /note="7 probable transmembrane helices predicted for FT BB1504 by TMHMM2.0 at aa 13-35, 64-86, 93-115, 141-163, FT 191-213, 228-250 and 257-279" FT CDS 1610877..1611776 FT /transl_table=11 FT /locus_tag="BB1505" FT /product="Putative ABC transport system, permease protein" FT /protein_id="CAE32002.1" FT /translation="MMEAYLIAIFITVLIYMLLAGGLALQYGFTGLINFGHVGFYAIGA FT YTSALLSLQGVPLVACILAATLVSGLSAYPLGVIALRLRGDYLAIVTLGFSESVRMILQ FT KEEWLTRGVHGIPGIPRLFGQYASGAMVDVLILATLLLTNILVFLGIRKIIGSPFGRTI FT KAIRDNEVAVMALGKNPAWFKTRSLMIGAALAGLAGAFTAHYLTFIAPEQFVPLITFYV FT WIAIIVGGVGSLKGVVAGTVILMVFLEGSRFVREFLFFDISEVQMASLRFFIIGVGLIL FT CILYRPNGIFGSASAEGK" FT misc_feature 1610880..1611761 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 9.6e-31" FT misc_feature join(1610889..1610957,1610967..1611035,1611048..1611116, FT 1611261..1611329,1611438..1611506,1611549..1611617, FT 1611678..1611746) FT /note="7 probable transmembrane helices predicted for FT BB1505 by TMHMM2.0 at aa 5-27, 31-53, 58-80, 129-151, FT 188-210, 225-247 and 268-290" FT CDS 1611779..1612540 FT /transl_table=11 FT /locus_tag="BB1506" FT /product="Putative ABC transport system, ATP-binding FT protein" FT /protein_id="CAE32003.1" FT /translation="MAQLSVQNIRAGFAGLLALDDVSIAVEKGERVGLIGTNGAGKSTL FT FSVIGGYVPAQGGRVHFDGQDISQFGVQRRVNLGLARTFQVPREFGQLSVLENMMAAAP FT DQRGEHLGTLFLSPGRVRRQEAEIRERAQDLLEFLNLAKVANVLAGKLSGGQKKLLELG FT RLLMMKPGFIMLDEPFAGVNPVLVDELSRRIVELNEQGITVLIIEHNLQALSELVPRMY FT IMDRGKVLCEGTPEHVLADERVREAYMGGTV" FT misc_feature 1611863..1612459 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.1e-47" FT misc_feature 1611884..1611907 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1612232..1612276 FT /note="PS00211 ABC transporters family signature." FT CDS 1612537..1613262 FT /transl_table=11 FT /locus_tag="BB1507" FT /product="Putativa ABC transport system, ATP-binding FT protein" FT /protein_id="CAE32004.1" FT /translation="MKTILELENVSAGYGETPIVQGIDMSVSEKEIVTIAGTNGAGKST FT LIKAVMGLLPRVAGSIVLNGKSLKELPVERRIFQGIGYVPQVSNVFGTLTVMENLQVVE FT AVDDRKAMIDRMLTLFPVLAERRRTQAENLSGGERQQLAFARALMSKPSLVLLDEPSAA FT LSPALTEQVFREVKRLPELGVAVLMVEQRARQALEFSDRGYILDSGRIVLADTAQALLQ FT NQEMADLYIGRSAASNQDS" FT misc_feature 1612624..1613163 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.9e-45" FT misc_feature 1612645..1612668 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1613259..1614641 FT /transl_table=11 FT /locus_tag="BB1508" FT /product="Putative amidase" FT /protein_id="CAE32005.1" FT /translation="MNEAFSTQGVVSMSEERTVSQPAERRPAPSRIAALTVEQGLREME FT AGKLSSEQWTQACLERIASRNPVVKAWVYVNADKALERARLVDREGRRQRLDGVPLGLK FT DIIDTADMPTELGDPEIFPGRRPAEDAAVTRLMRELGVVLLGKNTVSRHSIMLPGPARN FT PHDPSRTPGASSAGSAAAVADFQTPISLGTQTGGSIVRPSTFCGAVGFKPTIDTLPYAG FT LRRYSRPLDTLGAIARSVADLSILFGEALGDPRFDSELAVRRDFTVGVWRPLGWDDAEP FT CVREAFDDAVARLQQAGVRVKVLDMPKIFTQIADDHDIIMAYDLARSFKEIRRDHHDKC FT DPALLEYLDKGDRDTAQDYARTLDLADACRRAFLDVARDVDVLATPATLGEAPDVSDTG FT SNIFIRIWTLLHNPSLTLPIARGPRGLPVGLQLVGFQKEDARFLYWARCVESILGTRVH FT DV" FT misc_feature 1613415..1614587 FT /note="HMMPfam hit to PF01425, DE Amidase, score 1.3e-70" FT CDS 1614721..1616115 FT /transl_table=11 FT /locus_tag="BB1509" FT /product="Conserved hypothetical protein" FT /protein_id="CAE32006.1" FT /translation="MSSLWLDQARGSEPACPALQGATRADVCIVGGGYTGLWTALQLRE FT QSPGLDIVLLEAQECGAGASGRNGGFMLSWAAKFETLLKVCGTDEALRLLGESERIAAD FT VAGYLKRHGVDAQLRQDGWLWTASNAAQVDSWMPCIELLARHGQQAFVALPADEVRRLS FT GSAAHLAGVLSRSSATVHPGMYVRGLRRIALAKGIRIYEHTPMRSLRARPQPTVATARG FT EVRAAKVVLAMNAWSTRFRELNKGVVVVGSDLVATAPHPEALEKIGLTSGVAISDSRLF FT TNYYRNTCAGEMVFGRGGGDFAFNGAVGRLYEGPSRFAREVAAILHRFYPALAPLGIVR FT SWSGPIDRSMDGLPCFGHLGGHPDIVYGYGYSGNGVGPTYLGGKFLASMVLENDDAWRH FT SALARGLRGRFPPEPFRYVGSRVVKAALVRKEAAEDQGQAPARLDTMLAGLAPGGLVPV FT ARKEKA" FT CDS 1616180..1616893 FT /transl_table=11 FT /locus_tag="BB1510" FT /product="Putative GntR-family transcriptional regulator" FT /protein_id="CAE32007.1" FT /translation="MANFQATIHSRPLSPEFMTQARRPASTIQAVLTNLREKISLQSIL FT PGARLTEEELVDNYSIPRAMAREVLAVLEDRGIVRRIPNKGAVVAHVDMQWVYHYYDAR FT EALDGMMVRLAARQTRPEDWADLVEQFGEPFQKALETGDVDRLISLIETFRNRLQTAAN FT NPVLSDLAERIHERIRVVRQRVALLPGRAETMVADYRAVLAALARSDAEEAEQLMGILN FT RNNRAAIQKYERYVV" FT misc_feature 1616270..1616446 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 0.0002" FT CDS complement(1616937..1617245) FT /transl_table=11 FT /locus_tag="BB1511" FT /product="Conserved hypothetical protein" FT /protein_id="CAE32008.1" FT /translation="MTMFLHVVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGE FT NVAARSQGYTHATSSAFVDAAAHDAYQVCPAHVAMKAFMGPRIKRVVVYDGEVPAIG" FT CDS complement(1617265..1618044) FT /transl_table=11 FT /locus_tag="BB1512" FT /product="probable short chain dehydrogenase" FT /note="Similar to Gluconobacter oxydans gluconate FT 5-dehydrogenase Gno SWALL:GNO_GLUOX (SWALL:P50199) (256 aa) FT fasta scores: E(): 3.4e-28, 38.61% id in 259 aa, and to FT Ralstonia solanacearum probable gluconate 5-dehydrogenase FT oxidoreductase protein IdnO or rsp0947 or rs05386 FT SWALL:Q8XRB1 (EMBL:AL646081) (258 aa) fasta scores: E(): FT 1.1e-30, 39.6% id in 250 aa" FT /protein_id="CAE32009.1" FT /translation="MAHQFLTSTFGLQGRTVLVTGGASGLGLCMAATAGQAGARVIVND FT VRDAACNEAVEGLRAQGIDARGAVFDVSSAAAVSDAVAALAAARWSPDVLVSNAGNQNR FT APVVEQDPAVWQSIFDVHVNGAFHCARAVLPGMISQGGGRIIITSSVAALACMPGIAAY FT SAAKGALAAFTRALAVEYGGQGVTCNALAPGFVRTGFTTALQEREQFNDFLKSQVPLGR FT WADPDDIAPAVVYLASQAGRFVNGHVLAIDGGLLAHM" FT misc_feature complement(1617280..1618008) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 3.3e-74" FT misc_feature complement(1617511..1617597) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT misc_feature complement(1617943..1618044) FT /note="Signal peptide predicted for BB1512 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.936) with cleavage site FT probability 0.563 between residues 34 and 35" FT CDS complement(1618064..1618846) FT /transl_table=11 FT /locus_tag="BB1513" FT /product="probable short chain dehydrogenase" FT /note="Similar to Acinetobacter sp. ADP1 DcaC SWALL:Q937T4 FT (EMBL:L05770) (253 aa) fasta scores: E(): 5.4e-33, 43.37% FT id in 249 aa, and to Rhizobium loti probable short chain FT dehydrogenase mll1036 SWALL:Q98LG1 (EMBL:AP002996) (268 aa) FT fasta scores: E(): 2.8e-39, 47.01% id in 251 aa" FT /protein_id="CAE32010.1" FT /translation="MDHQDDFTGCRVMISAGAAGIGLAIARAFHERGARVQVCDVSDEA FT LAAAGAALPGLGAYRADVASEAGVDAWFAHALAELGGLDVLVNNAGIAGPTSAIGDLSV FT EDWDRTMAVNVRGQFLCVRRALEPLRQSSRAAIINLSSVAGRLGYPMRTPYAASKWAVV FT GLTQSLAIELGEDDITVNAILPGIVESERVDQVVAAKARLRGIPEPAMRAEVLQHVSLH FT RTVPMADIARTALFLASRTGRSITGQCMNICAGVQTLR" FT misc_feature complement(1618079..1618825) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 2.9e-62" FT misc_feature complement(1618337..1618423) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT misc_feature complement(1618592..1618615) FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT misc_feature complement(1618760..1618828) FT /note="1 probable transmembrane helix predicted for BB1513 FT by TMHMM2.0 at aa 7-29" FT CDS complement(1618881..1620161) FT /transl_table=11 FT /locus_tag="BB1514" FT /product="Putative ABC transport system, membrane protein" FT /protein_id="CAE32011.1" FT /translation="MTLAIFVFVLLAGLAIGLPVAYALILTGVALMYQLDFYDAQIVAQ FT NLLNGADSFPLMAVPFFMLAGAVMNAGGLSARIVDLALKLVGHIKGGLGYVTILAACIL FT ASLSGSAAADAAALSALLVPMMMKAGHSRARSSGLVASSGIIALVIPPSIGLVLIGVTG FT NISITGLFMAGIVPGILMGMSLCVAWWLLSRKERIQPLPRVDRAEVRQSLVRSFWALML FT PVIIIVGLRFGIFTPTEAGVVAAVYAIFVATCIYRELPMRRLYEVFLTSAKMTAMVMFL FT VAGALVSGWMITVAGLPAQVSDIISPFSDTPTLLMLVIIGLVIVIGMAMDMIPIVLILI FT PVLLPSVTAAGIDPVYFGVVFMLACAIGLITPPVGAVLNVVAGVTGTRMVELVKGVWPF FT LLAQCATLLLLILFPQLVLAPYRWIMH" FT misc_feature complement(join(1618911..1618979,1619016..1619084, FT 1619097..1619165,1619184..1619252,1619265..1619333, FT 1619394..1619447,1619457..1619525,1619586..1619654, FT 1619682..1619750,1619769..1619828,1619841..1619909, FT 1619928..1619996,1620075..1620143)) FT /note="13 probable transmembrane helices predicted for FT BB1514 by TMHMM2.0 at aa 7-29, 56-78, 85-107, 112-131, FT 138-160, 170-192, 213-235, 239-256, 277-299, 304-326, FT 333-355, 360-382 and 395-417" FT misc_feature complement(1619295..1619768) FT /note="HMMPfam hit to PF00597, DE DedA family, score FT 1.3e-29" FT misc_feature complement(1620093..1620161) FT /note="Signal peptide predicted for BB1514 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.928 between residues 23 and 24" FT CDS complement(1620161..1620673) FT /transl_table=11 FT /locus_tag="BB1515" FT /product="Putative ABC transport system, membrane protein" FT /protein_id="CAE32012.1" FT /translation="MTRIVHAYFTLLKAVIVICLAAMVVMVFSNVVLRFIFNSGIPVSE FT ELSRWSFVWLTFLGAILVLHERSHLGVDVVLQVLGPLARRVCLIVANLLMIYATWLILL FT GSIEQTTLNMGASAPASGLSQAWFFGVGVVFAASTGLILLYQLYQLFTVPAADLHKLIS FT PHESGAE" FT misc_feature complement(join(1620239..1620307,1620350..1620418, FT 1620479..1620535,1620593..1620661)) FT /note="4 probable transmembrane helices predicted for FT BB1515 by TMHMM2.0 at aa 5-27, 47-65, 86-108 and 123-145" FT misc_feature complement(1620587..1620673) FT /note="Signal peptide predicted for BB1515 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.951) with cleavage site FT probability 0.723 between residues 29 and 30" FT CDS complement(1620752..1621813) FT /transl_table=11 FT /locus_tag="BB1516" FT /product="Putative ABC transport system, solute-binding FT protein" FT /protein_id="CAE32013.1" FT /translation="MSRQDTIPRTRQERQMKFHYKRVAAGLAIALGAGMAMQAAAADIQ FT ERRVKFSYPVSKTNPVGLATDKFIELVGQKTGGKIKVTGYADAQLGNEIQAMSSAQGGI FT IELTVVSTAGAANNVKELGIFDLPFLFHSVEEADAVIDGPVGKELLGKFAAKNLVGLCY FT WDYGFRQVSNSKHPINKVEDFDGLKLRVLQNRIYIDTFKALGANPLPLPYPETYTALET FT KAIDGQESAYLVTKSSGYQEIQKYMTETNHVFLPAVVMASKRFWDRLSKDEQAIIQQSC FT DESVAYFRTTSRDLERKVVGELTAAGMTMNQIAPAEKARMAQATAAVTDKYKAELGADL FT VDRTLATINQARK" FT misc_feature complement(1620806..1621663) FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 8.9e-99" FT misc_feature complement(1621691..1621813) FT /note="Signal peptide predicted for BB1516 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.962 between residues 41 and 42" FT CDS complement(1621810..1622205) FT /transl_table=11 FT /locus_tag="BB1517" FT /product="Hypothetical protein" FT /protein_id="CAE32014.1" FT /translation="MNIPDALKPYATGELASRYVNVDELDWKPTPTPGIDMKILLDVPE FT TGLLTALFRWAPGTALPLHEHVEIEQTYVLSGSIVDDEGVVREGNYVWRPKGNRHIARS FT PDGALVLSFFLKPNKFLEGELAGKELK" FT CDS complement(1622246..1623160) FT /transl_table=11 FT /locus_tag="BB1518" FT /product="Putative hydrolase" FT /protein_id="CAE32015.1" FT /translation="MKFLTFSVQEQSRLGMLLDENRVLDLTALLAARPDLGLPGALRNV FT GELIALGEEALARLREPGLLDGVDVGALPTLQAVRVLPPLPMARNVFCVGRNYREHIIE FT GNLARGRPANSFPEAIEFFTKAPTAVIGHGGHVKRHAGLTDSLDYEVELAIVIGRAGAD FT IPREKALDHVFGYTIVNDITARDLQARHGQWFKGKSLDTSCPMGPVVVHRSAIPDANNL FT AVSLSVNGELRQQDNTSDMIFDVAAVVAQLSAGMTLLPGDVIATGTPKGVGFALTPPRC FT LQVGDVVSASVEHIGTLTNEIVA" FT misc_feature complement(1622330..1622824) FT /note="HMMPfam hit to PF01557, DE Fumarylacetoacetate (FAA) FT hydrolase family, score 2.6e-76" FT misc_feature complement(1622564..1622587) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1623207..1623878) FT /transl_table=11 FT /locus_tag="BB1519" FT /product="Putative GntR-family transcriptional regulator" FT /protein_id="CAE32016.1" FT /translation="MTGIQKKAGAQSVFEDVSALLRDMMKDITEPVRVREEDLANQLGV FT SRTPVREALIRLESTGMVHLRPGRGALLTPVTDEEYIEWLQLREQLEGFATREAALNAS FT QRDVERLRALFAPFIGLDEDAFAPVPYGQANVAFHKEIIALANNRLLERVWAAFGHRQT FT TYRRQTIKRLHRFGTSLREHLAIIDAIERRDADLAEKLARQHVRTLYDAFVKALQSGGG FT A" FT misc_feature complement(1623660..1623830) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 2.3e-05" FT misc_feature complement(1623708..1623782) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT misc_feature complement(1623714..1623779) FT /note="Predicted helix-turn-helix motif with score FT 1041.000, SD 2.73 at aa 34-55, sequence FT VREEDLANQLGVSRTPVREALI" FT CDS complement(1624028..1624519) FT /transl_table=11 FT /locus_tag="BB1520" FT /product="Putative AsnC-family transcriptional regulator" FT /protein_id="CAE32017.1" FT /translation="MAITLDAYDRKILELLQENNRLSQRELADSVNLSASAVNRRIAAL FT EANKVIRANVALVDPELVGRPITLMVEVKIENERLDLLDEVTNRFVRCPQIQQVYYVTG FT DFDFLLVLNCKDMTEYERLTRELFFTADNVKKFRTVVAMNVAKSTLQVPLGDVPAPPGD FT " FT misc_feature complement(1624124..1624435) FT /note="HMMPfam hit to PF01037, DE AsnC family, score FT 3.4e-28" FT misc_feature complement(1624391..1624456) FT /note="Predicted helix-turn-helix motif with score FT 1879.000, SD 5.59 at aa 22-43, sequence FT LSQRELADSVNLSASAVNRRIA" FT CDS complement(1624754..1625956) FT /transl_table=11 FT /locus_tag="BB1521" FT /product="Putative diaminopropionate ammonia-lyase" FT /EC_number="4.3.1.15" FT /protein_id="CAE32018.1" FT /translation="MLLINAHPDRNKPLDEPDRKVFDASAAQQAERFARARPGYAPTRL FT VALPGLARAQRVASIQVKDESTRFGLGSFKALGGAYAVIRLALQQASQALGRAAGIDEL FT DSQAVRAAAADIVVACATDGNHGKSVAQGAALVGARAVIFVHAGVSQARVDAIAQFGAQ FT IVRVEGNYDDSVAEATAVAQKNGWTIVSDTSWPGYEHIPSLVMQGYTTLLREAMQAMPQ FT PPTHVFIQAGVGGIAAATAACMSLAYEAAGAAAPKFIVVDPQRAACLFESARLGKRVRV FT DEQEPTIMAMLECYEPSMVAWRILARTAHAFMTVDEQDAVQAMRTLAAPAAGDAPIVAG FT ESGGVGLAAFLAAARDDGMRRDLGIDAEARIFVINTEGATDPARYQDIVGRTPEAVLAG FT A" FT misc_feature complement(1624823..1625851) FT /note="HMMPfam hit to PF00291, DE Pyridoxal-phosphate FT dependent enzyme, score 8.6e-09" FT CDS 1626329..1627513 FT /transl_table=11 FT /locus_tag="BB1522" FT /product="Putative peptidase" FT /protein_id="CAE32019.1" FT /translation="MGTPFSHDALFKELRAIRQDIHANPEFGFQERRTSGRVAAMLRAC FT GIAVTEGVGGTGVVGTLKRGASGKAIILRADMDALHIAEAPAEDRPHASRNDGYMHACG FT HDGHTTMLLGAAQLLAQNPDFDGTIHFVFQPAEEWGKGMLAMLDDGLLERFPASEAYAL FT HNAPGLPVGKFETRAGVFKSAEDNFEIRIAGKGVHSARPHLGRDALVAAAGVIVALQTI FT VSRVVAPGEFAIVSCTDMTTSGTRNVSSGEVVISGDCRSFKPETSALIEAEMRRVADHV FT AAGYGCAASVDYSRVFVPTVNDARITAAVAGIVKDRFGGDAIDAAAAPSNGSEDFAQLL FT RRIPGCYVNLGNGPSAALHNPAYDFNDEAIPYGVGFFVAIALARLPQAQFRSET" FT misc_feature 1626359..1627318 FT /note="HMMPfam hit to PF01546, DE Peptidase family FT M20/M25/M40, score 3.6e-76" FT CDS 1627510..1628520 FT /transl_table=11 FT /locus_tag="BB1523" FT /product="Putative ABC transport system, substrate-binding FT protein" FT /protein_id="CAE32020.1" FT /translation="MKKTLTSLLVAAIAHTAAPVHAGTLEDVKARGNLLCSSTTGSPGF FT SMPDDAGKRHGLEVDVCRAIATAVFGDPERHKIVVLNPTQRFTALQSGEVDILFNTTTW FT TLSREGAGALYAGVTYYDGQGVLVRKGTIASAKELDGGAICTNQGSTTELNLVDFFRAN FT KVSNEVITFATVQEAANAYESGRCDAWSADAGILAALRSKMKAPDDHVILADRLSKEPL FT GAAVRKGDDAWFSVVRWSIFALQAAEELGLTSKNIAEQAKSTTNPEVLRFVGKEGSLGK FT VLGLNGDWAYQIVAQVGSYAEIFDRNIGAASPLNLERGINASWKNGGLFYTPPFR" FT misc_feature 1627510..1627575 FT /note="Signal peptide predicted for BB1523 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.987 between residues 22 and 23" FT misc_feature 1627609..1628289 FT /note="HMMPfam hit to PF00497, DE Bacterial extracellular FT solute-binding proteins, family 3, score 2.8e-27" FT misc_feature 1627675..1627716 FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT CDS 1628651..1629862 FT /transl_table=11 FT /locus_tag="BB1524" FT /product="Putative ABC transport system, integral membrane FT protein" FT /protein_id="CAE32021.1" FT /translation="MQDSTIALKRPDKRAARPLLSRLHDRKVRGVLLQLLLAALLLWLG FT YVGVSNAVANLKAANIASGFGFLASTAGFDINQSLIPYSGATSTYGDAFVVGLLNTLLV FT AAIGIVLATLIGFLVGIARLSSNVVVAAVATLYVETLRNLPLLLQIFFWYSAVLVALPA FT ARESLHLADWVFLNNRGLYLPFVNIDGPAWPLWLVLALAVLGYALARRLALRARLRGGR FT SYPARTMALGLFVVVLGGGLLAVDPAASLDLPRFRGFGFAGGLRIYPEMVALVVALSTY FT TAAFIAEIVRAGIGAVGQGQREAAVALGLSPRHTQSLVITPQALRVIIPPLTSQFLNLT FT KNSSLAVAIAYPDLVQVFMGTVLNQTGRAVEIVSITMAVYLAISLVTSALMGVYNRRVR FT LVER" FT misc_feature join(1628741..1628809,1628948..1629016,1629077..1629145, FT 1629224..1629277,1629335..1629403,1629461..1629529, FT 1629677..1629736,1629764..1629832) FT /note="8 probable transmembrane helices predicted for FT BB1524 by TMHMM2.0 at aa 31-53, 100-122, 143-165, 192-209, FT 229-251, 271-293, 343-362 and 372-394" FT misc_feature 1629527..1629757 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 7.6e-12" FT CDS 1629875..1631029 FT /transl_table=11 FT /locus_tag="BB1525" FT /product="Putative ABC transport system, integral membrane FT protein" FT /protein_id="CAE32022.1" FT /translation="MNHSTTKQPAFVQAQAVQERPPPHQAGTAWAWVRQYVFESPRTFA FT LTLACAAILYWVLRGLLDFLVLDATWSGGAVQACQASIAQGRYGACWPFIDAKLGYFVF FT GGYPPPQRWRVVLFFVLAAAGIVWLLARRIRAKRVGAAYFFVVLPPLSYALLVGADALG FT LPHVSTDLWGGILVTLVVSLVGIVFSLPIGIVLALGRRSELPFVRLASTVAIELGRGVP FT LITVLFMFNTMLPLFLPEGLRPDRLLRPLVGVTLFASAYMAEVVRGGLQALPKGQYEGA FT QSLGLGYWQTTFLIVLPQALRIVVPGIVNTFIGLFKDTTLVAMVGILDLLKVVEVAIND FT PAWATPVTRYTGYAFLAFFYCACCYAMSRYSRSVERTLARSEKR" FT misc_feature join(1630004..1630072,1630211..1630264,1630298..1630366, FT 1630394..1630462,1630523..1630591,1630730..1630789, FT 1630808..1630867,1630910..1630978) FT /note="8 probable transmembrane helices predicted for FT BB1525 by TMHMM2.0 at aa 44-66, 113-130, 142-164, 174-196, FT 217-239, 286-305, 312-331 and 346-368" FT misc_feature 1630679..1630930 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 4.6e-17" FT misc_feature 1630682..1630768 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1631035..1631823 FT /transl_table=11 FT /locus_tag="BB1526" FT /product="Putative ABC transport system, ATP-binding FT protein" FT /protein_id="CAE32023.1" FT /translation="MNLRKLFSKDPVSAIDLDRHPAVEMRKVSKWYGNFHVLREVDLTV FT GKGERIVVCGPSGSGKSTMIRCINQLERHQEGEIRIGGAEVDDNLERLNAVRMEVGMVF FT QHFNLFPHLTVLQNCMLAPVWVKRKSEAEARDIAMHYLSRVRIPDQAGKFPGQLSGGQQ FT QRVAIARSLCMAPKIMLFDEPTSALDPEMVKEVLDTMTTLAQDGMTMLCVTHEMGFARK FT VADRVVFMDAGQIVEVNTPDAFFTRPQHERSVAFLRQIVH" FT misc_feature 1631176..1631733 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.6e-64" FT misc_feature 1631197..1631220 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1631506..1631550 FT /note="PS00211 ABC transporters family signature." FT CDS 1631908..1632252 FT /transl_table=11 FT /locus_tag="BB1527" FT /product="Putative membrane protein" FT /protein_id="CAE32024.1" FT /translation="MYESKGEPLLPTRHFMLRLLVHLLWAVLVIALVVFVGVVAHLWLE FT DISWHDAMLNTALIIGGIGPFIMPATVAGKIFFALYGMLIGLLFVATLGLILAPVAHRV FT IHKFHLDDDD" FT misc_feature join(1631965..1632033,1632061..1632129,1632133..1632201) FT /note="3 probable transmembrane helices predicted for FT BB1527 by TMHMM2.0 at aa 20-42, 52-74 and 76-98" FT CDS complement(1632272..1633495) FT /transl_table=11 FT /locus_tag="BB1528" FT /product="Putative amino acid aminotransferase" FT /protein_id="CAE32025.1" FT /translation="MTPIEAKFARLSTDHAPGQEVRQGNAGLDGLLRGDTLPGTPVDFS FT HGDVNTSAFAPTPGSLQEFVQGVERGGEQAYTEYRGAADLRLRVAAHLAEFTGAPVDGA FT NELIITPGTQGALFLAIASSVTAGDKVAIVRPDYFANRKLVEFLGGEIVPVDMRHLERD FT SGAGLDLDQLEAAFKAGVRTFLFSNPNNPAGVVYSPEEIAQIADLARHYDATVIVDQLY FT SRLLYTGTRYTHLRALPQAPANVITIMGPSKTESLSGYRLGVAFGAAHLIDRMEKLQAI FT VSLRAPGYCQAVLRTWFQEPAGWMNERIAQHQAIRDDLIRVLRAVPGLAVRAPEAGSYL FT FPRLPRLAVGLHDFVRILRTQAGVTVTPGTEFSPHADDSIRLNFSQNHAAAVQAIERTA FT QLIERYRA" FT misc_feature complement(1632299..1633222) FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 1.9e-07" FT CDS complement(1633517..1634509) FT /transl_table=11 FT /locus_tag="BB1529" FT /product="Putative dehydrogenase" FT /protein_id="CAE32026.1" FT /translation="MRTSTMKCLIVQPIHEEGLALLREAGVECIAPASAAMADVAAAIA FT DCDAAITRNAGLDTRAIEAGRRLRVIGNHGTGTNMIDLAAAERLGIPVVNTPGANARSV FT AELALAMAMALLKRTVPLDQAVRQGNWNIRYEAGLRELSGMSLGIVGFGQIGRALAAMA FT IGGFGMRVHVYSPSVAPQDIAAAGCQRADSLPALAREADIVSLHRPARPGAGPLVDDAL FT LLAMKPGALLINTARADLVDEAALARHLEAGRLGGAGLDVFSSEPPPADHPLLRLPQVV FT LAPHAGGSTDQALARTARAVAEQVIEVLRDARPAHLIAPHAWPRRRGAR" FT misc_feature complement(1633655..1634212) FT /note="HMMPfam hit to PF02826, DE D-isomer specific FT 2-hydroxyacid dehydrogenase, NAD binding domain, score FT 3e-54" FT misc_feature complement(1633985..1634071) FT /note="PS00065 D-isomer specific 2-hydroxyacid FT dehydrogenases NAD-binding signature." FT misc_feature complement(1634216..1634494) FT /note="HMMPfam hit to PF00389, DE D-isomer specific FT 2-hydroxyacid dehydrogenase, catalytic domain, score FT 2.4e-20" FT CDS complement(1634506..1635780) FT /transl_table=11 FT /locus_tag="BB1530" FT /product="Putative amino acid hydrolase" FT /protein_id="CAE32027.1" FT /translation="MHSAPDPDLDLAARLFDSLRAQSFDGVGVTRDAYGAGEQRAHDLV FT RACARDLDLPVRVDASGNLYVTLPGRDPARPARMTGSHLDSVPAGGNFDGAAGVVAGLA FT VLAGWRAAGWRPAADVTVMAIRAEESTWFPYSYLGSKAAFGLAAPDVLDLRRADTGRSL FT RDHLADLSIDPQRYGQPALRAAGIDRYVELHIEQGPTLVEAGLPAGIVTGIRGSFRYRD FT MAWHGEYAHSGAVGRAHRRDAVRAAALWMASLDRDWETLEDFGEDLVVTVGKVATDPQQ FT HAFSKVAGELQCCVDVRSISATLLERFDRLLRQRGVAAARATGTRVDFGPRTGSAPAAM FT DPGLIARLTAQARQRGIAALSMPSGAGHDAAIFAQQGIPTAMIFVRNEHGSHNPHEAMD FT MADFACATQLLSDILADDQPVTPHP" FT misc_feature complement(1634680..1635744) FT /note="HMMPfam hit to PF01546, DE Peptidase family FT M20/M25/M40, score 0.00027" FT CDS complement(1635785..1636582) FT /transl_table=11 FT /locus_tag="BB1531" FT /product="Putative decarboxylase" FT /protein_id="CAE32028.1" FT /translation="MPTPTQMKTTARYRPYAWRAKVGLIVPSTNTINEPEFYRLAPDGV FT TIHTGRAINAGPATQENYDRMARGVLEAADLIKTAEVDVVAYGCTSGSIVCSLDELCDG FT MSERVGVPAIATAGAVVAALRALGVRRVAVGTPYIDFVNQREREFLEQYGFEVVSIEGM FT DLGHTQEERRDIGRVPPQSTFQLARDIDRPQAEAIFLSCTNLATLDMIERIENELGKPV FT VTSNQATFWACLRLLGLSCAIPGYGRLLTDCLAPITRASYALA" FT CDS complement(1636582..1637376) FT /transl_table=11 FT /locus_tag="BB1532" FT /product="putative aldolase" FT /protein_id="CAE32029.1" FT /translation="MKHNPLKQIWRQGKPVFGTWATMVRHPRFMKLLSVTGLDFVLIEM FT EHSDFSISEVANLCLMAREAGIVPIVRPAGSDSHDYTRPLDAGAMGLLLPNVETPEQLS FT RILHQTKYYPDGQRILNMRGPHTDYVRLSAPLAQTAELNAHTLTIAMAETRLGLDNLDR FT ICAVPGLDAIMIGPDDLTQDLGVPGDMQHPLYQEAVEHVIATCDRHGVPWGFSCQDLAA FT AERWIARGIRWMPFSNDVNALFNTFSQAAAGLHRLAPREETA" FT misc_feature complement(1636603..1637370) FT /note="HMMPfam hit to PF03328, DE HpcH/HpaI aldolase FT family, score 3.4e-15" FT CDS complement(1637373..1638167) FT /transl_table=11 FT /locus_tag="BB1533" FT /product="putative creatinine amidohydrolase" FT /protein_id="CAE32030.1" FT /translation="MRIDQHPYDDIRAYLGKHDTILIPVGAVEQYGAHLATGTELRICE FT GIATEIGARTGLAVAPIVPVNYSAMFLDYPGTLSVEMRTIEDYLKEIGDSLAGQGFRHF FT FFINIHAGSLGPIESVCRHLRRRYDAVGGLIDVFSIMRDMAAGRLKTRQSPSGHASEMV FT TSVALAKFPELVFMERARAAQSLRSFTEGVNTVSSGKVTLGGSSFAVFSDISDYSPIGT FT QGDPTQASAEQGQAIWDATVDYMSEAARKFSAMSFQTEGAKA" FT misc_feature complement(1637406..1638167) FT /note="HMMPfam hit to PF02633, DE Creatinine FT amidohydrolase, score 2.1e-10" FT CDS complement(1638206..1639174) FT /transl_table=11 FT /locus_tag="BB1534" FT /product="putative exported protein" FT /protein_id="CAE32031.1" FT /translation="MNPPGILTMKKALLCSLLALPALCFGAYPERPINLIVPFPAGAGS FT DLTARTIAACMESKIPAARFVVLNKPGASGDIGLTALAQAAPDGYTIGLVNTPGVISLP FT IERKTAYTLDSFDFIANLVEDPGTISVHADSPIRTVADLVAAARAKPGAITVGTQGIGS FT AGHISALSLEQAAGIKLTAVPFQGASPASVALLGKVIDGAMTNLGEAITFANGKPWRIL FT GIMSPARSSQAPDIPTFQEAGYTVLGGSMRGLAAPRGIPAAAMAQLTRAVDECNRDDTY FT LTRARNTYQPLRYLKRDEYIKNLQAVDRELRKLWSVNPWQQ" FT misc_feature complement(1638236..1639033) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 6.2e-29" FT misc_feature complement(1639097..1639174) FT /note="Signal peptide predicted for BB1534 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.824 between residues 26 and 27" FT CDS complement(1639171..1640130) FT /transl_table=11 FT /locus_tag="BB1535" FT /product="putative exported protein" FT /protein_id="CAE32032.1" FT /translation="MLLPFRALPGLLAALAIAASASAQSYPDKPITLVVPFPAAGGTDL FT TARLFARALERQAGQPVTVINKPGAGGEIGMAHVARAAPDGYTLGIINTPNVLSIPIER FT RAQFGLDSFVLVANLVDDPATLSVHADQSIHTIADLVETARRQPGGLTYGSAGIGSAGH FT LSMLMFEKAAGVRLQHIPFKGTADVRTALMGRQIDVATANLGEALAYAKGAPWRTLGVM FT SAARSRMAPDLPTFGEAGYPLQSGSLRGIGAPAGMDAQRRGQVATLVARAAADPQFLDD FT ARKAEQEIRVVAGDDYAKVLTDQLAQLQNLWQTSAWNR" FT misc_feature complement(1639180..1639995) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.1e-36" FT misc_feature complement(1640062..1640130) FT /note="Signal peptide predicted for BB1535 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.814 between residues 23 and 24" FT CDS 1640337..1641236 FT /transl_table=11 FT /locus_tag="BB1536" FT /product="Putative LysR-family transcriptional regulator" FT /protein_id="CAE32033.1" FT /translation="MIKELRTLVAVAEHGSITAAAQHIGLTQAAASAQIQRLEESLQAQ FT LFDRVGRQVRLNAAGVDAVARAEHILHLCDELRDAPQRGSLRGHLRLGAIQSMQRQYLP FT RIIEALIGEHPEVSTHLELGGSLPLLTLVDHGKLDAALVVKPFFALPPELKWVPLLQEP FT FKVVCPAGEAGGDWRQILKTLPFIRYDSASFGGRVVDRFLQAHRLVPRCQIQSQDVDAI FT LEMVACGLGAALVPITDGARHQGRIRALDLGEHCFYREVGMVHPVHPRQGGLAMELVRV FT TQAQLRGAPFAHPLLAVE" FT misc_feature 1640340..1640519 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.4e-25" FT misc_feature 1640379..1640444 FT /note="Predicted helix-turn-helix motif with score FT 1472.000, SD 4.20 at aa 15-36, sequence FT GSITAAAQHIGLTQAAASAQIQ" FT misc_feature 1640382..1640474 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1640583..1641197 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2e-32" FT CDS 1641328..1641903 FT /transl_table=11 FT /locus_tag="BB1537" FT /product="putative exported protein" FT /protein_id="CAE32034.1" FT /translation="MKSLFITGAACMAVGLAAAGAVQAQTQTQTQPPPVSPAAGVDKLD FT SADRDFLEDAAQAGHLEVEGSKLALEKARATQVKDFAQKMIDDHTKVGVQLDTLARSKG FT YQAPAEPSLVQKAKLQALSLRDEGFDKAYADEIGVAAHEDAVELFTKAAGEAKDPDVKQ FT FATATLESLKAHLEMARTLQQAVAPAKP" FT misc_feature 1641328..1641399 FT /note="Signal peptide predicted for BB1537 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.980 between residues 24 and 25" FT misc_feature 1641601..1641621 FT /note="PS00307 Legume lectins beta-chain signature." FT CDS 1642125..1643840 FT /transl_table=11 FT /locus_tag="BB1538" FT /product="Putative membrane protein" FT /protein_id="CAE32035.1" FT /translation="MTIEALADVVRLHPELALFAAIVFGHFIGKIEIRKVSLGTVVGTL FT IAGMILGLLFEPEIPDLLKWAFFDLFLFAVGYSAGPQFFASLKREALPQMALAVVVSCT FT GLAAAIAMVALFRFDPGLSAGLVSGSMTQSAALGSALSAIAAMDVDEATRALLTAHAPL FT ADATTYIFGEVGLILFVTVVAPRLLKVDLRQVAREAEAELQARTDEDDAALWDQAPLSL FT RTYRLENAELDQRTVHEFERRYAAGRLTVTGIRRGDQLLRDVGADARLALGDIVLVASR FT RAGVVGAALEVGTEVDDQELLSEPMVRASIVLTRREMAGKTLGELARGAARGLFLDSLH FT RGESTLPRAMGTRVQRGDVFKLTGSRAAIATAARNLGFIEHDQGRTDLVYLAGGVVVGI FT LFGLLQVRLTGVPLGLGTSGGVLVVGLVAGWLYSRYPVVGHIPEPALRLLSDVGLIVFI FT AAIGLAAGPHAVQAIHEGGIALFAKLVGAGVVVTLAGPIAGLLLGHYVLKLPPIALLPG FT IAGAQTTVATLNALKERGGSDVYAIGFTVPFAVSNVLITLWGPVIVACAVALSR" FT misc_feature join(1642152..1642211,1642230..1642289,1642317..1642385, FT 1642410..1642478,1642620..1642688,1643286..1643342, FT 1643355..1643423,1643460..1643519,1643562..1643630, FT 1643649..1643717,1643760..1643828) FT /note="11 probable transmembrane helices predicted for FT BB1538 by TMHMM2.0 at aa 10-29, 36-55, 65-87, 96-118, FT 166-188, 388-406, 411-433, 446-465, 480-502, 509-531 and FT 546-568" FT CDS complement(1643837..1644727) FT /transl_table=11 FT /locus_tag="BB1539" FT /product="Putative LysR-family transcriptional regulator" FT /protein_id="CAE32036.1" FT /translation="MDTLDLDALRTLVVIQEKDGFAAAAVHIGKTQSAVTQQMQRLESQ FT LGRAIFERRGRQKRLTPLGLRLLDYARHLLAVNDEALRSLQQGSLEGVLRIGAPHDVAD FT NMLPPLLAQVARVSPLLQIDIHVGRSPFLMESLHRGEIDMTISNRHDPTLEGVVLRSSP FT TVWLCSASYVLDSAKPIPLVLADGPSLFRRLAQEALDDAGIRWSPSYTSSSLIGIKAAL FT RAGLGVTARGVELLDAEFRVLGETDGLPRLPDVAYYLFVRKNVVRPLTRRVFDMLKSNM FT RLLRSSERSFRADLG" FT misc_feature complement(1643882..1644469) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2.9e-32" FT misc_feature complement(1644533..1644712) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.2e-16" FT misc_feature complement(1644635..1644658) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1644835..1645425 FT /transl_table=11 FT /locus_tag="BB1540" FT /product="Hypothetical protein" FT /protein_id="CAE32037.1" FT /translation="MTAAAEREQVVQGAIQRIKRIAEAGEFDRAALDGILAELNQLAAR FT ASLWSEADFAAPQDGELQARYLISEDPDQSYALYLNVMRPGKRIVPHNHTTWACISAVD FT GVELNRVYERLDDGSVPGKAQLREIDQVTVEPGTGIALMPDDIHSVEILPGQVIRHLHL FT YGRALETLTERIGYDLEKGTCEIMSIGVQTRRH" FT misc_feature 1645285..1645320 FT /note="PS00192 Cytochrome b/b6 heme-ligand signature." FT CDS 1645427..1647028 FT /transl_table=11 FT /locus_tag="BB1541" FT /product="Putative transferase" FT /protein_id="CAE32038.1" FT /translation="MPSIHPIPPTVADMHFINAQTLKSWLHDGAEIALFDVREHGQYGE FT SHLFHGITLPYSRLEADVQRLAPRRQVRLVVYDDGQGIAQAAARRLAALGYGDVHVLEG FT GTPAWQAAGYALFAGVNVPSKTFGELVEQVYDTPHVTAAELDAMLGAGEDVVVLDGRPY FT AEYRKMAIPGATNCPNGELAYRVGKLVPSDKTRIVINCAGRTRSIIGAQTLINLGLPNP FT VAALQSGTQGWMLADLELEHGASRRYGGPSDDIEAARGAAEALARRYEVPMVDAETVRG FT WARDGQRTVFLCDVRTPEEYAAGTLAGAQHTPGGQLIQATDQYVGVRRARLVLFDADGV FT RARVVASWLCQMGHEAYVLEGGLASGLALPAPAPALPRPDEIDAATLAAWLDEGRPLAL FT VDVGASMRYRQAHIAQSRWSIRPLLAAALAGCAEPVVLVADEPGVAACAAAELAGLGVP FT ARVLAGGLQAWIDAGLPVQSSPDIPPDEACVDYLFFVHDRHSGNKAAARQYLEWEVNLI FT SQLDERELGEFRLPRR" FT misc_feature 1645490..1645762 FT /note="HMMPfam hit to PF00581, DE Rhodanese-like domain, FT score 0.00013" FT CDS 1647059..1648285 FT /transl_table=11 FT /gene="metC" FT /locus_tag="BB1542" FT /product="cystathionase beta-lyase" FT /EC_number="4.4.1.8" FT /protein_id="CAE32039.1" FT /translation="MTDTTSPRRLQTRLLHAGKKPAYDGGAPVNPPVVRASTVIFDNVA FT QQRDLRARRSGERLFTYGARGNPTNFALEDAVSELEGAYRTKLFPTGLAAIAMALLSYL FT KPGDHLLMSDAVYEPARKLVHSFLAPYQIRCTFFAADGSDVQDKLEPATRMIYAECPGS FT LVYEMCDLPRLAEIAHRHGALLACDNTWGSGCQYRPLALGADVSIMAATKYLSGHSDVM FT MGTVATTEAAWPALSERSDAFGMTVSPDDAYLVLRGIRSLAARLAMHERHALRIAGYLQ FT ERPEVRTVFCPALPGHPGHDIWRRDCTGTNGLLSFELQAGFDRAAAEQWIDSLALFGLG FT ASWGGYESLVTLADLGAARSVADWSGRGVVVRLHIGLEDPQDLIADLDQAFAAIGPAGR FT HNTVSRSEA" FT misc_feature 1647089..1648234 FT /note="HMMPfam hit to PF01053, DE Cys/Met metabolism FT PLP-dependent enzyme, score 3.5e-108" FT misc_feature 1647671..1647715 FT /note="PS00868 Cys/Met metabolism enzymes FT pyridoxal-phosphate attachment site." FT CDS 1648282..1649313 FT /transl_table=11 FT /locus_tag="BB1543" FT /product="Conserved hypothetical protein" FT /protein_id="CAE32040.1" FT /translation="MNIGQWLREDGGAARRSGRLRVGSMASGVEVFLPYIALRGARPGR FT TLWLHGQVHGDEINGMVAALRFANSLDPAAMSGNLVVTPTGNPQALDARRKRNPYDELD FT LDQSYPGKADGMITERVAHALIEQVRGVADVLINLHTMNPLFDSRPYCVYKTPPNDRVR FT EDDLLAAMAPFFPVLACRQDVGGKGELPGNIAGALDYQCLAAGVCAFMLELGAGNRYQP FT EHIERAEMGFRTLARSMGILPGAPAAEDHAPALRQVSRRGWITADEGGLFVPSYCAGDR FT VPEGASLGEVIALDGTVTPVAPMPREGILIGLRSDPVVHTGERLAFVAWEWRDAPTPAP FT SWR" FT CDS 1649368..1650360 FT /transl_table=11 FT /locus_tag="BB1544" FT /product="putative exported protein" FT /protein_id="CAE32041.1" FT /translation="MTILANFTRRLTLAATLATALAAFGPAAQAAGFPAEGRPVRIVVG FT FPPGGGADVLARAIAPGLAGKLSGNVIVENRPGAGGLTATEYVAKSAPDGYTLYIATPG FT SFTIWPNLRKLNYDPSKDFAPISTLVTMPNLLVVSPSTPYRSVKDVIAAAKAPGGQIDY FT ASGGVATIGQIAGEQFKLMAGLKMTHVPYKGTTPALTDVMGGLVPLTFCDPSAKGMIDS FT GKLRLLAVTTSKRSPLFPDTPTMDEAGVPGYDLMNWYGIVAPAGTPAEVVQRLNDALVE FT VMAQPEVVQRLAAAGMEATSSAPDGFGRLMATERAKWGKLVEQASMRAE" FT misc_feature 1649368..1649457 FT /note="Signal peptide predicted for BB1544 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 30 and 31" FT misc_feature 1649530..1650348 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 9.1e-100" FT CDS 1650421..1652760 FT /transl_table=11 FT /gene="bisC" FT /locus_tag="BB1545" FT /product="Putative biotin sulfoxide reductase" FT /protein_id="CAE32042.1" FT /translation="MSSASDSAPSASRPGDPEHPHSAHWGAFYAAFDGQAVRVRPHPDD FT PDPSPLIDNFTNALRHPVRVTAPMVRRGWLERGPGADQARGADEFVAVSWDEALDLVAR FT ELARVRDAHGPQAVFGGSYGWSSAGRFHHAQSQVHRFLNTALGGYVRSVNNYSAGASAV FT ILPHVLGPLDDVARRNVTWQQIVEHTDVVLAFGGMALRNTQVASGGVSRHTERGAMRAA FT ARRGCRFVCISPLRDDLPEEAAASWLPARPGTDAALMLALLHVLVDEGLHDRAFVARYC FT AGWETFEDYLMGRADGQPKNPAWAAALTGLAEADIAALARMLPSRRVLVVVSHSLQRAE FT HGEQPVWLGAVLAAALGQVGLPGGGYNYALGTLAHYGKRNNAVPIAALPQGRNGVDAYI FT PVARIADMLLKPGEPFDYNGQRLRYPHVRLAYWAGGNPFHHHQDLARLRAAFRRLDTLI FT VHETVWTATARHADIVLPCTMTLEREDIGGTPTDPLLVAMHRVAPPVGLARDDYDIFAD FT LAGRLQRRAAFTEGRDSRGWLRHIYETTRAALAARGDEAPDFDTFWARGELRLPQADDD FT GGLLRAFRQDPQGRPLPTPSGRIQVSSPTVASFGYADCPGHPAWLAPADAPDAQWPLYL FT VANQPATRLHSQLDFGAHSAAAKRHGREVCQVHPADAAARGIADGDVVRLFNARGACLA FT AARVTDAIMRGVVQLPTGAWYDPQDVHAERPMCMHGNPNVLTRDVGTSSLAQGCTGQLT FT AVQMERYDGPLPPVRAYEPPVPAARG" FT misc_feature 1650454..1652232 FT /note="HMMPfam hit to PF00384, DE Molybdopterin FT oxidoreductase, score 5.6e-110" FT misc_feature 1652317..1652682 FT /note="HMMPfam hit to PF01568, DE Molydopterin dinucleotide FT binding domain, score 2.1e-40" FT misc_feature 1652434..1652517 FT /note="PS00932 Prokaryotic molybdopterin oxidoreductases FT signature 3." FT CDS complement(1652773..1653603) FT /transl_table=11 FT /locus_tag="BB1546" FT /product="Conserved hypothetical protein" FT /protein_id="CAE32043.1" FT /translation="MTPTGKIAAIQFDVRQGENDANRARSCELARQAAAAGANLIVLPE FT CCVGGLVFDSRDEIRAVSETVPGPSTRAWSQVSRETGAWIVAGLSETDGAKIYNTAVLV FT GPNGELHRHRKLHVRGIEQRLFDVGDALTCVDTPLGRIGLAICYDMWFPEVCRNYALDG FT VDVVAAPANWSKSVRTADAFDAYGLPQGYHLMAATAVSNELVVVAADRVGTERGVAFLG FT TSCIFGPSGEALCPAASRGEEQILLADWPDIAAVRAQGGPHLGQRQPAVYPVTR" FT misc_feature complement(1652788..1653594) FT /note="HMMPfam hit to PF00795, DE Carbon-nitrogen FT hydrolase, score 6.6e-57" FT misc_feature complement(1653115..1653177) FT /note="PS01227 Uncharacterized protein family UPF0012 FT signature." FT CDS complement(1653617..1654369) FT /transl_table=11 FT /locus_tag="BB1547" FT /product="Putative amino acid ABC transport system, FT ATP-binding protein" FT /protein_id="CAE32044.1" FT /translation="MPDTAPCLELAGFSAGYTDTPIVRDISLTIPAGTVTTLLGGNGAG FT KSTLLKAIFGMVRQFGGAIRFEGRPIDRLACDARLRAGIGIVPQGRCNFPRMSVGENLE FT MGAYLLGRADKQRAMEEVLALFPMLKRKYHSLAGNLSGGEQQILETAMVLEMHPRLLLL FT DEPSLGLSPKMQQEVFDSVQEIRGAGLTVMMVEQNLHGALLISDTAVVLETGRKFKEGP FT ARQIMNDPDIKRAYLGATEDETAPATVH" FT misc_feature complement(1653725..1654273) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1e-46" FT misc_feature complement(1654229..1654252) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1654362..1655165) FT /transl_table=11 FT /locus_tag="BB1548" FT /product="Putative amino acid ABC transport system, FT ATP-binding protein" FT /protein_id="CAE32045.1" FT /translation="MKAPTPNTPALSVRGLAKAFAGVRAVDGLDFDVPAGSVTGLIGPN FT GCGKSTSIDCISGFQPPDAGRVQLAGADIGGLPPHAIARRGLTRTFQNIRLYDELTVRE FT NLLIAAQEYDGHGWLDAFLNRRALRDSEAAAGERARELIAEVGLSRYDSLPAGILSYGQ FT KKLVALAACLMSRPSVAILDEPLAGVNPTMIANIERIIDDLNRAGQTFLIVEHNMNFVM FT RRCHQVVVMESGRKLVEGAPSIIRSDERVVNAYLGSAPQEESHHA" FT misc_feature complement(1654464..1655060) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 8.8e-55" FT misc_feature complement(1654647..1654691) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1655016..1655039) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1655162..1656166) FT /transl_table=11 FT /locus_tag="BB1549" FT /product="Putative amino acid ABC transport system, FT membrane protein" FT /protein_id="CAE32046.1" FT /translation="MKEQTLDLPLGVASRRRAAPWLLAGALVLLALPFAGLGGYALKVA FT IMAIVFAVLATSLNLIYGFTGLLSFAQIAFWGIGGYTAALLAVDAHWSPWLGVLAGGAV FT AVAASLVIGYASLRLSRHSFAIVTLSLVLLMQLVAKDWVDLTRGPLGIPNLPTLELALP FT GLGQLSSANPVVFYFIMLAFAVLALAGVHRLVGSRIGRTLLAIKQNEPLTQSQGVATLR FT YKLLAFAVSALVAGMTGGLFVFYLSVVDPSIFDFYYTQMILIMVIIGGTGSFWGVIAAS FT AVFTIIPELLRVSPDLRLVLLGCVLVAAILALPQGIAGYFRERRLERIRRTLR" FT misc_feature complement(1655201..1656058) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 5e-19" FT misc_feature complement(join(1655210..1655278,1655315..1655383, FT 1655426..1655494,1655579..1655647,1655750..1655803, FT 1655816..1655884,1655897..1655950,1655963..1656031, FT 1656041..1656109)) FT /note="9 probable transmembrane helices predicted for FT BB1549 by TMHMM2.0 at aa 20-42, 46-68, 73-90, 95-117, FT 122-139, 174-196, 225-247, 262-284 and 297-319" FT CDS complement(1656163..1657035) FT /transl_table=11 FT /locus_tag="BB1550" FT /product="Putative amino acid ABC transport system, FT membrane protein" FT /protein_id="CAE32047.1" FT /translation="MTDFILQLIINGLAIGAIYALVAVGLSLIYGVLEIVNFAHGELVM FT LGGFAAFFAVSTLGLGYWPSILVATLLVAAAGLLLFDSVLFTLKSDDFQKGILLTLGLA FT MIIQNGALYLLRATPRTITTEYGFDAFQVGNLSIGVLRLIAFCLAIAAIVLLHAFLKWT FT RSGKSMRALAQNREAALMVGMRPRTIARTVFVLGAALCGLAGGVLAPLYTVHPLMGMPF FT VFKAFAIIIIGGLGNIWGAIIAALIVGMTESLAGGFGSVVLQDALAFIIMILILLVRPL FT GLFGKGMRV" FT misc_feature complement(1656172..1657023) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 2.9e-38" FT misc_feature complement(join(1656202..1656270,1656289..1656357, FT 1656400..1656459,1656556..1656624,1656682..1656750, FT 1656775..1656843,1656871..1656939,1656958..1657026)) FT /note="8 probable transmembrane helices predicted for FT BB1550 by TMHMM2.0 at aa 4-26, 33-55, 65-87, 96-118, FT 138-160, 193-212, 227-249 and 256-278" FT CDS complement(1657100..1658239) FT /transl_table=11 FT /locus_tag="BB1551" FT /product="Putative amino acid ABC transport system, FT substrate-binding protein" FT /protein_id="CAE32048.1" FT /translation="MNASKRLALAATLAATLAATGAIAQPIVVGVSTPLSGSAAFQGQH FT DRWGAELAVEQINAAGGVLGRPLQLNVQDNACNPAEGVNSVGRMLENRDLVAVSGAMCS FT SVTLALMPIVERASVPMLVSSSSAASITEKAGAGGNIWTFRAGPSDDSMAVALATYLKD FT EARFKKIAVLGENTDYGRGGAAAIAKALKPLGVTITSSEYYDKGTQDFTTVLTRLKLAA FT PDAIALYTVGADQINFIRQYRGFGMRVPLTGRIELGGLQAEGIKSGAINGATSVFQYAA FT ELDTPANQAFVKAYKEKYKEDPLLQSAISYENIQLLADAIKRAGSVDRKAVRDAIQASD FT YASMMGGRVAFDKNNQAHNNAVILKVEDGKVKVVATPGT" FT misc_feature complement(1657118..1658161) FT /note="HMMPfam hit to PF01094, DE Receptor family ligand FT binding region, score 0.0028" FT misc_feature complement(1658168..1658239) FT /note="Signal peptide predicted for BB1551 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.967 between residues 24 and 25" FT CDS complement(1658393..1658713) FT /transl_table=11 FT /locus_tag="BB1552" FT /product="Putative exported protein" FT /protein_id="CAE32049.1" FT /translation="MKTMQAALAAALMAATASAGAQYVIDVQDMNGAWKKADPNAVGLT FT NLQIATGAAQQQCVDRGIPGEQKRAANVIDKTTGVVIEEIDCAAWRKQAEILARKAAAS FT RH" FT misc_feature complement(1658651..1658713) FT /note="Signal peptide predicted for BB1552 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.479 between residues 21 and 22" FT CDS 1659004..1659207 FT /transl_table=11 FT /locus_tag="BB1553" FT /product="Hypothetical protein" FT /protein_id="CAE32050.1" FT /translation="MTASVLNYTLRQTSQPTEAQRRALRTLETARQLMAESGATPPAAD FT PVSTEAELVAYLNERYARPVNR" FT CDS 1659328..1660629 FT /transl_table=11 FT /locus_tag="BB1554" FT /product="Putative UDP-N-acetylglucosamine FT 1-carboxyvinyltransferase" FT /EC_number="2.5.1.7" FT /protein_id="CAE32051.1" FT /translation="MSNLIVHGGKPLRGRITPSANKNAVLPVLCATLLTSEPLRLHRVP FT DITDVRKILDIFRMLGSEVRMDHATDTLELHHRATRFDAATHRLPEEMRSSIMLVPPLL FT ARFGVARLEDNVKGCTLGVREIDPHVDVFCRFGGAVTRAEGSLLVRSAGDLVPNDHWLD FT YASVTTTENFVLCAAAAPGVSTLTNAASEPHVQEFCRFMTLMGVRIEGIGTSRLTVHGG FT GALGGGEFTFDEDFHEITTFLALGAITGGDVAVRNSAPGNFPLIDRTFAKFGVRITHED FT GWSRASTPGSLQVQTPFTSNVLTKVEAAPWPYFPVDLLPIFIALGVRARGNAMFWNKVY FT DGAMGWTGELSKFGAHVFLSDPHRLITFGGSPLTPASVESPYIIRVAIALFMVAASIEG FT RSEIRNATPIRRAHPRFVENLRSLGVEVEWESEE" FT misc_feature 1659343..1660587 FT /note="HMMPfam hit to PF00275, DE EPSP synthase FT (3-phosphoshikimate 1-carboxyvinyltransferase), score FT 8.5e-22" FT CDS complement(1660834..1661376) FT /transl_table=11 FT /locus_tag="BB1555" FT /product="Conserved hypothetical protein" FT /protein_id="CAE32052.1" FT /translation="MRAMSLSDHAEKFSFDIIAAEQRAARLPACVAAGLPDGLLVFAVD FT DAHSDTAQFSERYGFGLQDCANTLVLRYRKDGGEHYAAVVALGDRRLDVNGAVKARLGA FT QRLSFARREDATALTGMEFGGITAFGLPAGWPILVDEAVMQRPHVVMGAGVRTAKLLLA FT PAQLRALPGVDVAALSV" FT CDS complement(1661421..1663271) FT /transl_table=11 FT /locus_tag="BB1556" FT /product="ABC transporter, ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0872" FT /protein_id="CAE32053.1" FT /translation="MAGPWQMARNKLDLRGSAFKAVLGFTFRHWARQPWRIGLIAMLAL FT LSALADILTPLYVGRLIDAVAGGAPADTVARNAALGAFWLLIALGVGATLLRQAIFMNI FT IALTLKMMHDIAGLAFHQVQRLSSDWHANTFAGSTVRKITRGMWALDLLNDTLLIALLP FT SLAMLAGATALLGWHWPLMGLVVGMGSLLYVAVTMALSLGYVAPAARLGNAWDTRMGGA FT LADAVSCNAVVKAFGAEWREEARLARVTGKWRHRTRRGWVRGTINGGVQGAMLVAMQAA FT ILGVALLLWQRGQASVGDVTFAFTTFFMLQGYLRDVGMNIRNLQRSINDMEELVSLQRQ FT PLDVEDLPGAGPIDIGAGEIRFENVTFRYGPHEQPLYRDFSVRIAPGERVGLVGHSGSG FT KTTFIKLIQRLYDVDGGRITIDGQDIAAVRQASLRSQIAIVQQDPVLFHRSLAENIAYG FT RPGATQAEIERAARLASAHDFIMALPKGYDTLVGERGVKLSGGERQRVAIARAFLADAP FT ILILDEATSSLDSESEVLIQRAMERLMEGRTTLVVAHRLSTVRALDRLLVMDRGRVIEE FT GSHEALIRLHGGVYRRLFERQALELTRGLSQWELGGAAAS" FT misc_feature complement(1661559..1662113) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2e-62" FT misc_feature complement(1661736..1661780) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1662069..1662092) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1662330..1663163) FT /note="HMMPfam hit to PF00664, DE ABC transporter FT transmembrane region, score 1.6e-07" FT misc_feature complement(join(1662402..1662470,1662654..1662722, FT 1662735..1662803,1662969..1663037,1663095..1663163)) FT /note="5 probable transmembrane helices predicted for FT BB1556 by TMHMM2.0 at aa 37-59, 79-101, 157-179, 184-206 FT and 268-290" FT CDS 1663652..1664311 FT /transl_table=11 FT /gene="tpm" FT /locus_tag="BB1557" FT /product="thiopurine S-methyltransferase" FT /EC_number="2.1.1.67" FT /note="ortholog of Bordetella pertussis (BX470248) BP0873" FT /protein_id="CAE32054.1" FT /translation="MDADFWLDRWREGRTHFHQTRVTPLLQKYWPALDVPAGGQVLVPL FT AGKSLDMVWLAGQGLRVLGVELSQLAVEQFFDENGLRPEIHQSAQGRHYVAGNLELICG FT DVFALEDATLAACAGVYDRAALVALPEPMRKRYAREVYGRLGRGCRGILITLDYPQDQM FT EGPPFSVDDAEVQALYAGHTEARLIDRRDILDKEPKFNQRGVARLDTLVYRLERLG" FT CDS 1664399..1664551 FT /transl_table=11 FT /gene="vir-18" FT /locus_tag="BB1558" FT /product="vir-repressed protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0874" FT /protein_id="CAE32055.1" FT /translation="MGMKSILGLLLAAALLGGCAVYTPHGAVVVDPPDRGGGFCPPGQA FT KKGNC" FT misc_feature 1664417..1664485 FT /note="1 probable transmembrane helix predicted for BB1558 FT by TMHMM2.0 at aa 30-52" FT misc_feature 1664423..1664455 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1664660..1664827 FT /transl_table=11 FT /locus_tag="BB1559" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0875" FT /protein_id="CAE32056.1" FT /translation="MKFCMATLMLAASLALAGCAGGQGSQPGPPHPGAVNPYSSGGFHD FT AGPDYPDTGR" FT misc_feature 1664660..1664725 FT /note="Signal peptide predicted for BB1559 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.610 between residues 22 and 23" FT misc_feature 1664684..1664716 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(1664839..1665519) FT /transl_table=11 FT /locus_tag="BB1560" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0876" FT /protein_id="CAE32057.1" FT /translation="MKSSLYRIAALSAAALLLAGCASQRAPKESGFLGDYSQLREEQVP FT GGARLIYRDAALKPRQYTAMWLSPVEYYPSPQPSAQVSMETLTELQNYLDQSLRRKIGR FT EIRLVNGPGPGVAKARIAITAVGSESEALAAYQYIPVALAITGARAVLEGGRPQQATIA FT IESKVTDSQTGQLLWASVRGGTGERVRAIAQGQASVPASALKPLIDEWTDNVAREIRNY FT VRSK" FT misc_feature complement(1665445..1665519) FT /note="Signal peptide predicted for BB1560 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.670 between residues 25 and 26" FT misc_feature complement(1665457..1665489) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1665801..1666517 FT /transl_table=11 FT /locus_tag="BB1561" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0877" FT /protein_id="CAE32058.1" FT /translation="MPDAHDPYLVSGRFEIANLLQTLQARQCLLLMRIPGRPFNSVTSV FT LHVDAQAGQVVLDAAQDDTLNQRLADAGDVAFDTSLDNISISFAAARVTRCEFEARPAL FT LVDLPETLTRVQRRDTFRIAVPVAQPATWVREAGGAEPLALCDISPGGLALADPQQTLD FT PAPGKIYRGVLALPELGAFAAAIRVVHHLDEVLAKGKTSRRIGCAFVELDKGTGIRIQA FT YVNALQRDQIARQRGL" FT CDS complement(1666533..1667834) FT /transl_table=11 FT /locus_tag="BB1562" FT /product="putative phospholipase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0878" FT /protein_id="CAE32059.1" FT /translation="MQVPDPRSPFIRPALAGALALALAGMSLPALAGISYRLDRPAAAP FT GETVRLEAVFFNDGSASAAWNAPQQLVLQWRGADGQTIRSLAQRPAGEAALNIPVNNFA FT RMSWDAVVPVHARGLQAVSIEGESTMLALDATGREQDTLASTPADVPVTDARTGQPLPP FT AAVTAAGVSPDSGPAPAQVAVSQTFQPASAFDVFRSAISEYQPMYFDIGTREQTTARFQ FT ISAKYRLFSPKGDRPATFGENFYLGYTQTSLWDLEGDSKPFIDTTFNPSAFWLSDNIWS FT SASQNWRVGLNTGVEHQSNGKSGNDSRSLNDAYVQPALNYRFDSGSTLTFAPKVKTYFG FT VARENRDYADYAGYVDWNLRWAQDGGAVVSAMYRQGASSRRTTQLDFAWPLKRTWLDMN FT GYLHLQYFNGYGETLLGYDQRHDSQFRIGLSLVP" FT misc_feature complement(1667739..1667834) FT /note="Signal peptide predicted for BB1562 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 32 and 33" FT CDS complement(1667969..1669471) FT /transl_table=11 FT /locus_tag="BB1563" FT /product="probable aldehyde dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0879" FT /protein_id="CAE32060.1" FT /translation="MDTPSDLLRKLGLDPAALAQGSLRARSPIDGALLARVPEHSVAQA FT HAAITRARQASQQWRDVPAPRRGELVRRFGDVLREHKEALGRLVSLEAGKILAEGAGEV FT QEMIDICDFAVGLSRQLYGLTIASERPGHRMMETWHPLGVVGVISAFNFPVAVWSWNAA FT LALVCGNAVVWKPSEKTPLTALACQALLARALQDYGEAPAGLAEVLIGGRQLGEALVDS FT HDVALVSATGSTRMGRQVGPRVAQRFGRVLLELGGNNAIIVAPSADLEMATRGIVFGAI FT GTAGQRCTTTRRLIAHTDIADTLVARLKQAYASATVGDPLQPGTLVGPLIDRAAYDAMQ FT AALTAAREQGGQVSGGERLLAERYPDAWYVRPAIVEMPGQTDVVCHETFAPILYVMRYG FT DFPAALAMHNGVPQGLSSAIFTNDLREAEAFLSSAGSDCGIANVNIGTSGAEIGGAFGG FT EKETGGGRESGSDAWKHYMRRATNTVNYSRALPLAQGIRFGE" FT misc_feature complement(1668014..1669426) FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 3e-132" FT misc_feature complement(1668692..1668715) FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT tRNA 1669653..1669729 FT /note="tRNA Arg anticodon TCT, Cove score 90.16" FT CDS 1669991..1672879 FT /transl_table=11 FT /locus_tag="BB1564" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0880" FT /protein_id="CAE32061.1" FT /translation="MAPARVCKMGNGARRLRGWPVRLLIAGLAVAAIFLVAAVLIALSW FT MNSRNLLLDAAARTANDAAQITFERTRRMIEPASATLRTLSFDPIVSAPRLQDRLERMR FT LLAEELAANPLISALYVGYDNGDFLLARMLDDPGIRQHFGAPGQARFLVQTVTRAADGT FT AKGDFLFYDGGLSPITRRSEADYRYDPRERPWYANAGEGAALTISAPYVFFSTRQVGVS FT LSRRAEGGKAIVGLDIVLDDLGRMLDELRITPSAELALVDGSGAVVAYRDPQVLTARAQ FT AAGDTHLRPLDDLGVEPLSDLRRIARDGRPVSYDVAGHEWLGVMLPFDGFDNVDLRLLL FT TAPADELLGDLQHDRQRMVLITGGLILLFLGLGWWGGSRIGRALERTTAQAKRMSAFDF FT SRPPDAPAWLRETRELNGVMDNVSNTVEAFLAISDVLGAEPRIETMLAQVLEKFVHATR FT CRSGAIYLLQKDSRTMARAAVAGDAHGLEESLPCAGGGDAAPAAGAADGLQRVQFELRS FT RAGRVEGLLVLRHAQDQDHAAPGFQAFAFRLTGMLSAAIETRQLIESQKQLFDAVIRVL FT ADAIDAKSPYTGGHCERVPALAIMMTDRMCADTSGPYADFTFTEDERYAFYLAAWLHDC FT GKITSAEHIVDKATKLEVIYNRIHEIRMRFEVLWRDAEIAHLRACLDGQPAAASAQARD FT ERQAQLQDDFRFVAECNLGGEFLADEAIERLRRLGQATWLRHFDDGLGLAAAERRRLEG FT SRAGAPALPAIEPLLADKPQHRVEWGDNKPAVERDDPRNALGFDMKLPAYRQDMGELHN FT LSIRRGTLTDEDRFAINDHIVQTLIMLKQLPWPRHLERVPDIAANHHEKMDGTGYPRRL FT PGEALHLTERVMAVADVFEALTAADRPYKLPKTLSESLRIMAVMCKERHLDTELYLYFL FT RHRIWLAYAQQHMNPSQIDDVDIEALARIAQG" FT misc_feature 1669991..1670101 FT /note="Signal peptide predicted for BB1564 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.758) with cleavage site FT probability 0.228 between residues 37 and 38" FT CDS 1673103..1674455 FT /transl_table=11 FT /locus_tag="BB1565" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0882" FT /protein_id="CAE32062.1" FT /translation="MNITQEIAKRVVQTSIRDLPADAVGYSETLAMSALGAMAAGHRSA FT GGREIVDYVKSAGGAAQATVLGHGLKTSMEMAGLANGTFAHATEYEDDSFPEAVSSYTL FT FPAIFAVAEHAQASGARVVEAFAAGYEAQARIGLACRQARRNGFMVLSLAGSIGCAASA FT AKLLGLDERQTTMALSLAASQGAGIGYQTGSMAHIVEMGFAARNGIAAALMAAQGMTGQ FT PDVLEAPRGLMNMITGDQVEAPAAIIEHWGRPYRLMEIGIKSYPCCYHLQRIIETTVDL FT RHAEGLAAADIEEISVEVNAFFPTVVQHMEPHDEIEAQFSLPHVLAIAMLEDQVVPAGF FT SQARIDDAAFQAFRRKVKQVVREDWGWTPTGWTPRITYRLADGRVIVREPEQARGQPPA FT LLTFDQCVPKYLGCVQGIYPEQQVERSIALLRGLAGLDSVAELMRCLATPA" FT misc_feature 1673103..1674428 FT /note="HMMPfam hit to PF03972, DE MmgE/PrpD family, score FT 1.3e-27" FT CDS 1674484..1675008 FT /transl_table=11 FT /locus_tag="BB1566" FT /product="biotin carboxyl carrier protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0883" FT /protein_id="CAE32063.1" FT /translation="MLVVKTKFSDLTHEDIDRILEIVNRVDDIDLQIQVDGLGLRVRKG FT NVGAPVALPAVSAPAAAEAPAPAPSPAPSPAPAAQPAVAAAAAPAAARQDLLSITAPMI FT GRFYAKPSPNDPAFVALGSQVGPDDSVCILEVMKLFNTVKAGVAGEIVEILVQEGDMVE FT EGDVLFRVKPQ" FT misc_feature 1674772..1674996 FT /note="HMMPfam hit to PF00364, DE Biotin-requiring enzyme, FT score 2.6e-21" FT CDS 1675005..1676459 FT /transl_table=11 FT /locus_tag="BB1567" FT /product="probable carboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0884" FT /protein_id="CAE32064.1" FT /translation="MSRRIGIIDTTLRDAQQCLWATRMTAGMMDPIAQALDEAGFDMID FT FMAPVQFDVCVRYLREDPFEKARHFRKRFRNTPMRSYCRSKSLVGFSMVPDDMVELWID FT CLAANGFSAVGTLDSLLDVDNMKVSVRRAKKIGIKSIGALVFCESPLHTDALYAGTAAE FT LVRCGVDGIMLKDSGALLTIERIRTLIPALRAAVGDIPIEVHSHSNTGLVQRVYLDAAD FT LGIDQLHTSIAPLAGGVAQPSIQNMTRNLAQRGYRTDVDMARVEEISAYLHRLAARYDF FT PLGKPMEYDEFHYRHQMPGGMTENWRFQLRQAGLENRFEEILEEIGRVREDLAWPIMVT FT PFSQIIGVQAMLNVVNGERYRAVPDEVKMYALGHFGRLLGPVEPNALDRIVANGSPDVG FT LTPQPKDPALPGLRKANPGMTDEELLLRYMFPADDVEATLGCKPLKLTVPAGGPIVRLI FT EEILPRAGIRHFELRSQSEHISFTRP" FT misc_feature 1675035..1675856 FT /note="HMMPfam hit to PF00682, DE HMGL-like, score 2.3e-09" FT misc_feature 1675542..1675571 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT misc_feature 1675884..1676408 FT /note="HMMPfam hit to PF02436, DE Conserved carboxylase FT domain, score 1.2e-11" FT CDS 1676494..1676802 FT /transl_table=11 FT /locus_tag="BB1568" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0885" FT /protein_id="CAE32065.1" FT /translation="MTQPAASSHAVIVMYDAPAELDAWMHGDHYREVLATPGVTGVRRY FT EVLDGPQACRKYLAVIETDDLDATLAWRDSEAGARSQQDANQRGVANRLGLTCRRIY" FT CDS 1676848..1677723 FT /transl_table=11 FT /locus_tag="BB1569" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0886" FT /protein_id="CAE32066.1" FT /translation="MIMPPILDMRLRPPVPAWTKGSVFRTAMHYPRHNLTFKGARSAWL FT EDVGLLFEEMDSAGIRYGVAMGRASSGAGNLGGVANQDIVDLLATYPDRFLGFLGVDLD FT NIAGSLAEIRELAGAPGVKGISIEPGSARVPRWSDDKTLDPVYELALELKLPVSISLSG FT LLSALAGHDITWSSPVSIQRVAQRYPDLKIVVSHAAWPYADEMVVVALACPNIYVSPDL FT YASTRGMICADSYVKGANMFLEDRTLFGTAYPVKDIQDSLRDFLQLGWREDIIHKVLWT FT NAARLLGVDK" FT CDS 1677749..1678804 FT /transl_table=11 FT /locus_tag="BB1570" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0887" FT /protein_id="CAE32067.1" FT /translation="MKRTALIAGPYGIVGNALVQHLARDAAWDVVTISRRQEATLPGVR FT HIAADLLDAAQAEAALAAFPGITHVFYCAYAPRPTLGEEAAPNLAMLANLVSAVDRHAR FT GLARVVLVHGTKWYGNHLGPFRTPAREDDARHCPPNFYYDQQDWIAARQRESGRWSWTA FT FRPHGIFGYALGSPMNHLMALSLYASVMKAAATPLKFPGTPAAFAALNQCTDARLLARA FT MAWSVDVAACENEAFNFHNGEPERWANLWPAVAEAFGMQAGGVQQIRLAAMMPANEAAW FT QAICQRQGLRHFPLEAYVNWAFADWVYSNGFDQVCSLYKLRRAGWTEILLFDDMLKSML FT SDLRQRKLLPA" FT CDS 1678817..1679608 FT /transl_table=11 FT /locus_tag="BB1571" FT /product="GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0888" FT /protein_id="CAE32068.1" FT /translation="MAQMKDNNVSNRATLVLYENRSIPLYRMIKEELIRFVQKKGIKSG FT MALPGDNELASQFGVSVGTVRRAIAELVSERIVIRQQGRGTFLAPYDTSRMLNSFWHIE FT RRDGVVDVPLVSTHGFSQASATEEVAQKLALQPGDPVFVIKNSMTMQGTPVLLDTIYVP FT VRTFEGLTREKLSARDATIYDFYREQYGINIVKTIDRVSATVADKDTAKRLGCKLGAPM FT LRILRVAYSFGDTPIEYRCSLLDSENHEYVDVTGGDTSRYG" FT misc_feature 1678901..1679080 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 2.6e-15" FT misc_feature 1678961..1679026 FT /note="Predicted helix-turn-helix motif with score FT 1399.000, SD 3.95 at aa 49-70, sequence FT PGDNELASQFGVSVGTVRRAIA" FT CDS 1679641..1681011 FT /transl_table=11 FT /gene="accC" FT /gene_synonym="fabG" FT /locus_tag="BB1572" FT /product="biotin carboxylase" FT /EC_number="6.3.4.14" FT /note="ortholog of Bordetella pertussis (BX470248) BP0889" FT /protein_id="CAE32069.1" FT /translation="MRLKKVLIANRGEIALRIVRACREMDIRTVQVYSSADEDSLPVRL FT ADEAVPIGGPEPSASYLNIAALIAAAREHGCDAIHPGYGFLSENEDFAQACIDAGIVFI FT GPDPGAIRMMGDKAQARKIAKEAGVPIVPGSPEPVSDVEEAIKVAREVGYPLLVKAAAG FT GGGRGMRVIQGEAQLREGLERASMEAKSAFGDGSVYIERYISPVRHVEIQVFGDGEDVI FT HLGERECSIQRRHQKLLEESPSPVLSEETRQRMGEAACALARAVKYRGAGTLEFVMDGK FT SGEFFFIEMNTRIQVEHPVTEAVTGVDLVRLQLAVAAGGRLGLRQQDIVMKGHAIECRI FT NAEDPQKAFMPSPGTVNDIRLPSGPGVRMDSHVYRGYKLPPYYDSLLGKLIVWDESREK FT AIARMLRALGELEIVGVKTTKEFHERLMRDEDFIAANVNTQFVKEKLYADHPMRHLL" FT misc_feature 1679644..1679982 FT /note="HMMPfam hit to PF00289, DE Carbamoyl-phosphate FT synthase L chain, N-terminal domain, score 3.5e-42" FT misc_feature 1679986..1680630 FT /note="HMMPfam hit to PF02786, DE Carbamoyl-phosphate FT synthase L chain, ATP binding domain, score 3.4e-98" FT misc_feature 1680100..1680144 FT /note="PS00866 Carbamoyl-phosphate synthase subdomain FT signature 1." FT misc_feature 1680499..1680522 FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT misc_feature 1680649..1680969 FT /note="HMMPfam hit to PF02785, DE Biotin carboxylase FT C-terminal domain, score 2.7e-57" FT CDS 1681027..1682562 FT /transl_table=11 FT /locus_tag="BB1573" FT /product="putative acyl-CoA carboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0890" FT /protein_id="CAE32070.1" FT /translation="MSHEELLVDYAARKDHALGMGGPAKLEKRRAEGVLNARERLELLL FT DPGTFEESGLFAVSHRKEVAERTPADGKIAGYGKVQARKVAVVANDFTVMGASSSVVNG FT KKIRHMREVATKNGLPLIFLGESTGARMPDRMGAEGRAILGQDPYEYRRLRETPWVSAL FT LGPCYGSSTWYACLSDFVVMRRGATMAVASGRVTSKAIRQEIDSEELGGWRMHTQSTGL FT VDALAETDEEALEIVKKWLAYFPSNQNEPPPRQAVTPESVPDTGAILQHVPTDSNKVYD FT VRKAIDCIVDRDSVMELKARFGRSICTMVARLDGHPVGILASNPMFKGGAIDVDACNKA FT ISFLVLCDSFNIPLVFLVDQPGFLIGIEGERRAAPGRIMNWMNAISLVTVPKISVIMRK FT SYGQAYLNMGGGRNSDEVLAWPSADLGFMAPGVGANVLFGVNEQDDPERYRELVAQLSK FT DTSAWGLAALYETHAVIDPRETRAHLIRLLDIHRGAQGRRIGQHLLSNWPTTY" FT misc_feature 1681066..1682523 FT /note="HMMPfam hit to PF01039, DE Carboxyl transferase FT domain, score 8.9e-80" FT CDS 1682608..1682829 FT /transl_table=11 FT /locus_tag="BB1574" FT /product="Putative biotinylated protein" FT /protein_id="CAE32071.1" FT /translation="MANVEVISEVSGSVWKVLVAAGDTVAEDQEIAILESMKMEIPVLA FT PCGGTIGDLRMEVGAPVGEGDVIAVISE" FT misc_feature 1682617..1682820 FT /note="HMMPfam hit to PF00364, DE Biotin-requiring enzyme, FT score 2.1e-14" FT CDS 1682826..1683551 FT /transl_table=11 FT /locus_tag="BB1575" FT /product="Putative acetyl-CoA synthetase" FT /protein_id="CAE32072.1" FT /translation="MSPAPMDQRELSSILRQALEAGRGALDEPTGKRILAGHGIAVPKS FT VVLPADASFAQVEGQLAQPYVLKLVSPDVIHKTEMGGVRLNLASPAALRQAADEMRQRV FT EQAGARVEGWLVEEMAEPGVEVVVGGLRDPEFGPMVMIGLGGIFVEIFKDVAFRICPVT FT REDALDMIGELRSSPLLAGARGKQAVSIDALVETILRVGGEGGVLLAGQPEVAELDINP FT LIVSPRGAVAVDARFILTQ" FT CDS 1683559..1685055 FT /transl_table=11 FT /locus_tag="BB1576" FT /product="Conserved hypothetical protein" FT /protein_id="CAE32073.1" FT /translation="MTEPKILDSLFQPKSIAVVGASASTVSGGNRFIRNLRAFGYAGPI FT YPVHPSAGEIEGLPVFASLEALPETVDYAYVATAAERVPGVIRSGRGKVRVAQVMSSGF FT GETQEGDALQRDLLAAARDANVRVVGPNCLGVYSPRARVSFTRRVTDEAGHVGVVCQSG FT GLGTDIIRRGQQRGLRFSGLVTIGNAVDVSASELLEYFLADEQTRVIGMYLESARDGRR FT LFEVLRQAGCRKPVVLLKGGGTAQGRRAASSHTGALAGSEQAWAALGKQTGMPIVDTLD FT EFLDVLLLCQCLLPRSQPTRTVALFGNGGGTSVLGTDACGRAGFAVPPFAADTLAALEA FT LKLPAGSSVLNPVDVPAGALQQNEGRAATDIVRILAQDDSIDAVIIHANMTVITDFQHV FT DMLKNIIAAVTQARQHGRGVAHLILVLRSDGDAEIEERKRGYRRDSVQAGIPVFNEIAE FT AAKALACLRVIEAVRCRRAQPSIPVDGRSRSAPESASQAS" FT misc_feature 1683586..1683906 FT /note="HMMPfam hit to PF02629, DE CoA binding domain, score FT 3.1e-07" FT CDS 1685094..1686101 FT /transl_table=11 FT /locus_tag="BB1577" FT /product="Putative solute-binding protein" FT /protein_id="CAE32074.1" FT /translation="MKLKMLAAACAAAAVSLLTPASAVHAQGKPAKVLKLAHGATENQA FT VGMAFLKFAELVKEKSGGTLAIETHLAGSLYNERTSIEAVLNGAVDLGGGSNANWGAFT FT RTLIFMDLPYVFKDEAAFEKAMAGQVGEEIRQRFERDGFKLLMLLNNGGFRHVVNTKKQ FT LKVPGDLAGLKIRTTASPVEIAMFKNWGAIPTSVDWAEVYNALSSGVVDGEFVMPTWLA FT TAKHYEVLKYATANDAVIGVQTLVMRKDRFAKLPAESQKAILEASREAEAYGNRIDHDM FT AAKALAYAESQGVKVYHPSAEEMTQWRTTGQQIWKQFEGQLDKTLFQQVLDAQK" FT misc_feature 1685094..1685171 FT /note="Signal peptide predicted for BB1577 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 26 and 27" FT misc_feature 1685199..1686059 FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 4.8e-75" FT CDS 1686204..1686761 FT /transl_table=11 FT /locus_tag="BB1578" FT /product="Putative membrane protein" FT /protein_id="CAE32075.1" FT /translation="MAELSERREYQTMNRKQGAAALTTRVLVGFPRMVLAGLLALLIIF FT LVMSVISRYFMQLGTPWSDEFARILFAWIVMVGFAVAVQQRANVAVDILVEQAGPRMKR FT ALYILQDALILVFSVVFTYAAYQTVQFASIQTLPGLGITIGWLYSSCVAAGVLMVVYAT FT LMLIQTLRGQRQPPHYEAGGDL" FT misc_feature join(1686303..1686371,1686399..1686452,1686516..1686584, FT 1686627..1686695) FT /note="4 probable transmembrane helices predicted for FT BB1578 by TMHMM2.0 at aa 34-56, 66-83, 105-127 and 142-164" FT CDS 1686779..1688065 FT /transl_table=11 FT /locus_tag="BB1579" FT /product="Putative membrane protein" FT /protein_id="CAE32076.1" FT /translation="MTIAILSFSFVLLVLVGMPISFAMGISSLLAMLYQSDLPINLLVH FT RTVMGIDSFVLLAIPLFIFAGSIMEQGGISERLVRFAYTLLGRFRGGLPMVVVGSTMLQ FT SGISGSTVADVSAMSAMTLKPLENEGYPRPYSLSVIGASCAFSILIPPCILMVVVAAVA FT NTSVVAVFAAGVVPAVVIGLMFFAFIHIQARLQNMPRGEAYSFVAILKGLKDALFALGV FT PILIFGGIRMGVATVTEMAAFAVVYSLLVGGLVYRRLSWRGIYQALVDTCVATGVICLL FT MGFAMIFGYLLATEGVPGAVAQWIRDNHISPWGVMLITALIFVFIGAVLEGAPAVLIFV FT PILLPVVRELGIDVVHWLTVVVLASGIGLFVPPTGLAVLVACSVGRVSMQAIIRPLIPF FT LLLLLAGLAVIMAFPVISIGLPRAMGIPW" FT misc_feature 1686779..1686847 FT /note="Signal peptide predicted for BB1579 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.503 between residues 23 and 24" FT misc_feature join(1686791..1686859,1686902..1686970,1687031..1687099, FT 1687193..1687261,1687280..1687348,1687391..1687459, FT 1687478..1687546,1687589..1687657,1687715..1687819, FT 1687862..1687930,1687964..1688032) FT /note="11 probable transmembrane helices predicted for FT BB1579 by TMHMM2.0 at aa 5-27, 42-64, 85-107, 139-161, FT 168-190, 205-227, 234-256, 271-293, 313-347, 362-384 and FT 396-418" FT CDS 1688078..1689316 FT /transl_table=11 FT /locus_tag="BB1580" FT /product="Putative membrane protein" FT /protein_id="CAE32077.1" FT /translation="MRAADPDSPYSWAVAAATLVLASLSFGAANSLPMLFPELSAEFGW FT DGGSVASLYGATMAGAAVSSLLMGRLLDRIGFFPIGVVATLAMCGGMALASVATARWQF FT YLIYAVLIGGLGQGAFLSTVAAAVSQWFLRSRSLAVAIALCGQGVGGLLVPPLLRAVSG FT GHGWRDALLAYAAVAVVAMLAAMALYMPRPPVGLGRPRSLAGPPAGAAAPDGGRLIVWL FT ALALLLANSAAAGVASHLVSYGAQAGLSPVRAGALMSAHYGLVLVARLAIGYSLDRLDK FT YAVLLATTAIQIVGALLLQFTDSIAMVVAGAAAIGIGFGGYYPAYGALVQGHYPKEQVG FT RRLTELYLASFIAAGFGTWLVGTLFDLRGGRFDLAFFAALLLSMLALGIVLACKSRIAG FT HGGAKRLALPAQR" FT misc_feature 1688078..1688161 FT /note="Signal peptide predicted for BB1580 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.926) with cleavage site FT probability 0.327 between residues 28 and 29" FT misc_feature join(1688114..1688182,1688225..1688293,1688306..1688374, FT 1688387..1688455,1688489..1688557,1688585..1688644, FT 1688732..1688800,1688837..1688905,1688924..1688983, FT 1688999..1689067,1689104..1689172,1689200..1689253) FT /note="12 probable transmembrane helices predicted for FT BB1580 by TMHMM2.0 at aa 13-35, 50-72, 77-99, 104-126, FT 138-160, 170-189, 219-241, 254-276, 283-302, 308-330, FT 343-365 and 375-392" FT CDS 1689417..1690649 FT /transl_table=11 FT /locus_tag="BB1581" FT /product="Putative reductase" FT /protein_id="CAE32078.1" FT /translation="MEQQHTIVIIGAGQAGGWAARTLRAEGYAGRVLLCGDETAPPYER FT PPLSKEQLAAQAPALPSLMDAAQLAELHIDWLGGAAATRIDRAGRRVLLGDGQALRYDA FT LILCTGGRPRLPPLPGADLPCVHTLRTIDDAARLRAAFDGAPRVAVLGGGWIGLEVAAA FT ARQRGCAVVLLEAADRLCARSGPGLLSETLARLHAGQGVDLRLNARVQRIDAHGRGCRL FT ALADGQGIEADIVVAGVGLVRNDELARQAGLACDHGVIVDGACRTSDPDIYAAGDVAVM FT ARPDGKLAGLESWQNAQDQGIAAARAALGQAVRYAPLPFFWSQQYDTLVQMAGASEPGA FT ALVLRQGGPAQLLCVEMRADGRAAAVLGVNAAREFRQLRKYIAEGARLDARRLADPRSP FT LAGAVLGEAAA" FT misc_feature 1689432..1690289 FT /note="HMMPfam hit to PF00070, DE Pyridine FT nucleotide-disulphide oxidoreductase, score 7.7e-71" FT misc_feature 1689657..1689707 FT /note="PS00216 Sugar transport proteins signature 1." FT CDS 1690748..1691158 FT /transl_table=11 FT /locus_tag="BB1582" FT /product="Hypothetical protein" FT /protein_id="CAE32079.1" FT /translation="MNMDETQALVAVVYRFFSGLDRRDNEAVAGLMADDGVWNRQGTEL FT VGPDAVRAALAQRDPRRQTAHIVSNLWIEQATPDSARVRFYMTAYETLTSPDGVVGEPR FT MLGVRDCVDELARVGGAWRIARKQSRRLLPAE" FT misc_feature 1691087..1691122 FT /note="PS00213 Lipocalin signature." FT CDS 1691185..1691994 FT /transl_table=11 FT /locus_tag="BB1583" FT /product="Putative decarboxylase" FT /protein_id="CAE32080.1" FT /translation="MAVLDDALLDTLARELYEAEQTRTPIRQLSLRHPALTIEDAYAIQ FT RKWVALKIAAGNPLKGHKIGLTSRAMQAAIGIDEPDYGALLDDMFFADGTTIPAGRFIA FT PRVEVELAFIMGRRLEGPDVTLFDVLEAARYVTPALEILDARVQMVDPQTRATRKVTDT FT ISDNAANAGVVLGGRPVRVDEVDLRRVGAILMRNAVVEETGLAAGVLNHPANGVAWLAR FT KLSAHGIALEKDQVIMAGSFTRPVHAASGDTLSADYGPLGTVSCHFA" FT misc_feature 1691200..1691874 FT /note="HMMPfam hit to PF01689, DE Hydratase/decarboxylase, FT score 4.5e-113" FT CDS 1692177..1693121 FT /transl_table=11 FT /locus_tag="BB1584" FT /product="Putative LysR-family transcriptional regulator" FT /protein_id="CAE32081.1" FT /translation="MGGASTEFIGLRQPSALAFEDLTTLRIFVRTVEIGNFSEVARRIG FT ANPAMVSKRIANLEHKIGQRLLNRNTRRLMVTEAGQRLYDHCMRALIELDQAAEEMSNM FT QDKASGLLRMTAPAMLGEAVIAPQLPQFLQQNPLLSLDINFSLEKVDLFKARIDVAVRI FT ADSVDPGLVAIKLAPYRRVFCVAPQYIEAKGTPELPADLMDHNCLITRGSVLNTRWPVR FT LDGEIGNVPVKGNLVTDNGHAARLACLAGLGVMMAPRWLLDEDIRAGRLVEVLADYVPD FT NRSVYALLLQRTGFSAKLQIAIDFLKRCFASMN" FT misc_feature 1692240..1692419 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.7e-16" FT misc_feature 1692279..1692344 FT /note="Predicted helix-turn-helix motif with score FT 1282.000, SD 3.55 at aa 35-56, sequence FT GNFSEVARRIGANPAMVSKRIA" FT misc_feature 1692489..1693109 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2.1e-38" FT CDS complement(1693118..1694017) FT /transl_table=11 FT /locus_tag="BB1585" FT /product="putative membrane protein" FT /protein_id="CAE32082.1" FT /translation="MGISNWQPTTRAACWMSGALVSLLAMAVATRELSAHVSVFQILFF FT RSACGLLIIVPLVWRAGWRQVATARPGLHVLRNATHFLAQYGWVYGIAFIPMAEVFAIE FT FTVPVWTALLAAVLLGERLTAARLLAVALGLAGVFVIVRPGSGMIHPAALAVLLGAIAF FT ALAYIMTKMLARTETPLCILFYMTLVQLPLGLAPALANWSSPPPHVWPWILVVGTMGLA FT THYCLARAMALADATVVVPLDFLRLPLIAVVGAVFYGEAIEPLLFLGAGMILAGNLYSI FT LAERRRPAMPRAARDGSH" FT misc_feature complement(join(1693169..1693237,1693247..1693315, FT 1693334..1693393,1693421..1693480,1693514..1693582, FT 1693592..1693645,1693658..1693717,1693727..1693795, FT 1693832..1693900,1693928..1693981)) FT /note="10 probable transmembrane helices predicted for FT BB1585 by TMHMM2.0 at aa 13-30, 40-62, 75-97, 101-120, FT 125-142, 146-168, 180-199, 209-228, 235-257 and 261-283" FT misc_feature complement(1693172..1693537) FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 7.4e-08" FT misc_feature complement(1693589..1693957) FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 2.9e-15" FT misc_feature complement(1693937..1694017) FT /note="Signal peptide predicted for BB1585 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.953 between residues 27 and 28" FT CDS 1694202..1694525 FT /transl_table=11 FT /gene="ndoA" FT /gene_synonym="pahA2" FT /locus_tag="BB1586" FT /product="Putative ferredoxin" FT /protein_id="CAE32083.1" FT /translation="MSEQWTDVGGEDMLTEEEPVAVRVADREIALYLAHGEVYATDNLC FT THGNARLCDGFQEGHEIECPLHQGRFDIRDGRALCAPLTRDIRTYPSRVEGGRVLVRVA FT GAD" FT misc_feature 1694211..1694492 FT /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain, FT score 4.1e-24" FT CDS 1694647..1695510 FT /transl_table=11 FT /locus_tag="BB1587" FT /product="Putative oxygenase" FT /protein_id="CAE32084.1" FT /translation="MKLVSYLDRTQRDPQPSYGAVVGERIIDLATPQAPTLRAALARDG FT VDGLAARLRQADGAAGLALADATLLAPITDPDKILCIGLNYRLHAEEAGMAIPARPSTF FT VRFAGSLAAQGQPVLRPAESDQFDYEAELAVIIGKPARRVSQARAMEHVAGYACLAENS FT VRDWQRHSTQATPGKNFVRSGAFGPWLVTADEAGAPEAMTVIGRLNGETVQHDSVANMI FT FTVAQLVSYLSTFAELLPGDVIATGTPAGVGMSRKPPRYLRPGDVFEVDISGVGVLRNP FT VDDDSR" FT misc_feature 1694923..1695417 FT /note="HMMPfam hit to PF01557, DE Fumarylacetoacetate (FAA) FT hydrolase family, score 6.7e-49" FT CDS 1695522..1696520 FT /transl_table=11 FT /locus_tag="BB1588" FT /product="Putative cyclodeaminase" FT /protein_id="CAE32085.1" FT /translation="MLSSAIWLSEENITALVSLKEAIGVLETGVRALGTGEGFNIPKAL FT GAYGDASSMHSLGSALPEAGFCGYKNWINTPRGAKAVYVLFDAHEGRLLAIMEANALGQ FT MRTSAMTGLGTKWVARPGADDMAIIGTGRQALAQVAAVHAVRPLARIRVWSPTAENRQA FT FFETLRAQFDTEVVVADSLAQACDGATIVTTVTRAREPFLDAGVLGRGVHLNAVGAILP FT HSAEFSQDVFARVGFIAVDDVAGAQKASREFIDYFEKGPGKGDWSRVRPLGEVIAGGET FT PAPDCDISLFKAMGMGISDLSVAVLAYQRAKDAQIGQSISLMANAPIRLPV" FT misc_feature 1695528..1696466 FT /note="HMMPfam hit to PF02423, DE Ornithine FT cyclodeaminase/mu-crystallin family, score 1.1e-43" FT CDS 1696548..1697666 FT /transl_table=11 FT /locus_tag="BB1589" FT /product="Putative dioxygenase" FT /protein_id="CAE32086.1" FT /translation="MEHKETTLDNKIKLVDVSGRPAREQTFWPTVVLPRAAIESEIERL FT ASIPAPADGLRAASVDHPSNTGPIPAYAPGIDVQIVVLKPGEQTEPMLRNSSCVDMCIR FT GKGLVTTGAKTFQAERFDVWNTPSMTPVVYRNDGSDLFVRLCYSNAPLLERLDVHYVGQ FT VANATRPGSQDAALAASQRRARDAATPIPIGEDGAQMLGYEWLVDIDTVDSRMLHWPWK FT DVSPHLETVYGMDLAYTGRHLYVLYNPATERRIGTSHSFFATIAKLPPGKVDQPHRHTS FT AAINYIMWGNGKSVVNGEKIQWQEGDLHFSAPGWSVHNHASRDQGFVALTIQDHPLHIA FT MESLLWQETLKSPILKLGSEQGIQTNLSRVAA" FT CDS 1697695..1698192 FT /transl_table=11 FT /locus_tag="BB1590" FT /product="Putative dioxygenase (small subunit)" FT /protein_id="CAE32087.1" FT /translation="MVAPVPRDPALFALEASVRRLYDEIADMLDQDLVERFPDYFVEDC FT LYQVVSRENYAEGLPQANIYCDGLGMVRDRVTALRETQVYVPRIWRHFISGVRITAIDG FT EDIHARANFLITEAMSDADPTIFLVGQYLDVLVRDGDELKFRQHLAVFDNHHVRRSLIV FT PV" FT misc_feature 1697764..1698174 FT /note="HMMPfam hit to PF00866, DE Ring hydroxylating beta FT subunit, score 2.1e-06" FT CDS 1698208..1699449 FT /transl_table=11 FT /locus_tag="BB1591" FT /product="Putative oxygenase (large subunit)" FT /protein_id="CAE32088.1" FT /translation="MDQRVNPAAEAGRQWPAEGWTRVPFWVYTDAQVYERELEAFYYGP FT TWNFVALECEIPEQGSYKRAWIGERQVVVVRGEGGQVHVWENRCAHRGARLCWKNKGQE FT TSFTCPYHQWNFNLAGQLQGVPLKRGVLKKGGMPADFDTSAHALKSLRVHVERGSIWAS FT FSDEAPPFEQYCGAEVMAGLHRQFDGRPLRLLGYSRQLIPGNWKLYFENLKDPYHATLL FT HSFLITFGLWRADTQSESIPLDDGHSMMVSRNVGKKKSDATAEITRFKDALELNDLDTV FT TPRTEFEDGKVVAICLFPSVIIHQQANTFGVRHVIPKGVDSFELAWTFFGYADDDDEMQ FT RLRVRHANLYGPAGFVAMEDGEVLSESQLGAHHYGHRSAVVEMGGRDVERQDHMVTEVL FT IRAFYKHYREVMGL" FT misc_feature 1698343..1698681 FT /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain, FT score 1.3e-30" FT misc_feature 1698718..1699443 FT /note="HMMPfam hit to PF00848, DE Ring hydroxylating alpha FT subunit (catalytic domain), score 2.3e-05" FT CDS 1699524..1700744 FT /transl_table=11 FT /locus_tag="BB1592" FT /product="Putative ABC transport system, substrate-binding FT protein" FT /protein_id="CAE32089.1" FT /translation="MNKIQGQNAAPSRRRFIKGAGAFGAAALFGGAAPAVLAQSRQPLR FT IGALNSYSKVFAALGNANLNGMNMYFDQIGNTIAGRKVEVIREDDEINPQVGLQKLKKL FT VESDRCDIVTGIQASNVAMAAVEYLRQSKAFMLCSGAGVAQLSYTGMPYFFRCSISTVP FT IHATMGEWFYDNVAKEALLTASDFAGGRNTLEEFKAGFSRKGGRIIKEIYPPLGNNDFS FT PYLADIRSMSPQATFSFYAGTDAVRFVKQYDEYGLKAKSRLTGSGFMLDSDTIPAQGRA FT ALGALNSLHYADTLDNPANLKFVADYRARFKDYPSVYSEYGYVAARIIHLALEAVDGNS FT EDKDKLRAAMRAIKLDAPRGPFRFNEETQSPIHNVYIREVAEVDGRLTNKVIHTIPDAI FT EPPRRAG" FT misc_feature 1699524..1699637 FT /note="Signal peptide predicted for BB1592 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.900 between residues 38 and 39" FT misc_feature 1699569..1699637 FT /note="1 probable transmembrane helix predicted for BB1592 FT by TMHMM2.0 at aa 16-38" FT CDS 1700812..1701675 FT /transl_table=11 FT /locus_tag="BB1593" FT /product="Putative ABC transport system, membrane protein" FT /protein_id="CAE32090.1" FT /translation="MDFVITQLLNSLVLGVLLFMMSAGLSLIFGLMNVVNIAHGSFFMI FT GAFTAYTLAQFSGNFWFALGVGWIPAVAAAVLMERVFIRPLYKRGHLDQVLLTFGFIFV FT FGDICKYLWGADIRNVAPPEMLEGSLELAGAIVPKYRLFLVCFGGVVAAALWWFLERSR FT IGAMVRAGVDDAATAAGIGINVPLLFGCIFALGAALAAIGGIVASPILGVYLGMDVEIL FT IPAFIVTVVGGMGSLRGALVAAMLVGAIDTFGKAYFPDYALFLVYLLMVVVLLTRPQGL FT FGIARA" FT misc_feature 1700812..1700973 FT /note="Signal peptide predicted for BB1593 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.564 between residues 54 and 55" FT misc_feature 1700821..1701669 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 1.7e-23" FT misc_feature join(1700824..1700892,1700911..1700979,1700992..1701060, FT 1701094..1701162,1701220..1701288,1701364..1701432, FT 1701475..1701543,1701580..1701639) FT /note="8 probable transmembrane helices predicted for FT BB1593 by TMHMM2.0 at aa 5-27, 34-56, 61-83, 95-117, FT 137-159, 185-207, 222-244 and 257-276" FT CDS 1701678..1702679 FT /transl_table=11 FT /locus_tag="BB1594" FT /product="Putative ABC transport system, membrane protein" FT /protein_id="CAE32091.1" FT /translation="MKTASRPMLFALLCAALAAAPLASDYTLGLISEILIFAIFAMSLN FT LLVGYTGLMSLGHAAFFGMSTYTVIALGVHLGISGWWGILAGVAMATALAAVIGVFCIR FT VSGIPFLMLTMAFSQLLYAASLKWRSLSGGSDGLVGFVRPALFGVSLSESAVARYAVVA FT VGFALVLVFLWCLVRSPLGSIFIGIRDNEQRMRAIGYPVQRFKLLSFIIAGFLAGVAGA FT LYALFNAYVSTDILHWHLSGDVMIMMILGGSGTVLGPAIGAALFLLLKNFIGSYNDYWS FT FWVGAVFIFCVMFMREGVWGYAVARWRAAHRSAPPQAPPEPPVAKAVLREAK" FT misc_feature 1701678..1701746 FT /note="Signal peptide predicted for BB1594 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.675 between residues 23 and 24" FT misc_feature join(1701696..1701749,1701759..1701827,1701840..1701908, FT 1701918..1701986,1701990..1702049,1702140..1702208, FT 1702290..1702358,1702416..1702484,1702521..1702589) FT /note="9 probable transmembrane helices predicted for FT BB1594 by TMHMM2.0 at aa 7-24, 28-50, 55-77, 81-103, FT 105-124, 155-177, 205-227, 247-269 and 282-304" FT misc_feature 1701744..1702589 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 4.1e-12" FT CDS 1702676..1703419 FT /transl_table=11 FT /locus_tag="BB1595" FT /product="Putative ABC transport system, ATP-bidning FT protein" FT /protein_id="CAE32092.1" FT /translation="MTMLQTENLCKAFGSVVVTRNVSLSVRAGERHIIIGPNGAGKTSL FT VHQLTGQLKPSSGRILFKGRDITGAAPDAICQMGVGRTFQKNNLFMNLSVRENVRLAVQ FT AKQGGWYEALRGIETRHAQWERADQLLEQVRLASGARQRVGELSYGEQRQLEVAIAMAA FT EPELLLLDEPTSGMSPAETDRMIDLVRSLPPSLAVLMIEHDMKVVFSLADTITVLYYGE FT VLASGAPCDIQGNQRVRDVYLGGKH" FT misc_feature 1702760..1703338 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 7.5e-51" FT misc_feature 1702781..1702804 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1703419..1704114 FT /transl_table=11 FT /locus_tag="BB1596" FT /product="Putative ABC transport system, ATP-binding FT protein" FT /protein_id="CAE32093.1" FT /translation="MLEVSGINTYYGASHVLRDVSLQVRDGEVTSILGRNGAGKTTTVL FT SIMGYLKPRSGRIAYRGRDIGGAPSHRISRLGLGFVPQERGIFDSLTVEENLTVAARPG FT RDGRWTLERIYALFPRLKERRANRGFQLSGGEQQMVSIARALMLNPSVILLDEPSEGLA FT PLIVDEIVEILRKLKSEGMAVLLIEQNLSVALDLGDTHYVLSKGEVCFTGDSAALRGNE FT SVLSTHLSV" FT misc_feature 1703497..1704039 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.1e-51" FT misc_feature 1703518..1703541 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1703812..1703856 FT /note="PS00211 ABC transporters family signature." FT CDS 1704123..1704866 FT /transl_table=11 FT /locus_tag="BB1597" FT /product="Putative oxidoreductase" FT /protein_id="CAE32094.1" FT /translation="MDQRGLFVVTGGSRGIGAAIARLAARDYPVAILYRADAAAAEAVA FT GDIAAQGGRAVALQADVGDEASLMDAFARLDRLGRIAVLVNNAGVTGGVARVEDVARGT FT LEEVWRVNVLGAFLAAREAVRRMSRRRGGAGGAIVNVSSGAAQLGSAGSWVHYAATKGA FT LDTMTVGLAREVAGEGIRVNAVRPGVIDTEVHAQRTPEQLRRMVGAIPLGRMGTAGEIA FT QAVVWLAGEQASYVTGCLLDARGGF" FT misc_feature 1704129..1704860 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 3.1e-54" FT CDS complement(1704902..1706497) FT /transl_table=11 FT /locus_tag="BB1598" FT /product="Putative glutamyltransferase" FT /protein_id="CAE32095.1" FT /translation="MSLPFDWSFPYASRKMPVLASNAVATSQPLAAQAGLRMLLAGGNA FT VDSAIATAIALTVVEPVMNGIGGDLFALVWHGGRLHGLNSSGCAPAAWTPEYFAGRETM FT PPTGWGAVTVPGQVAGWKALSERFGKLPFAALFEPAIAYAEQGFPVSPTIARQWATQAP FT KLAGEPGFADAFLPQGQAPQAGQWWRFPAQARTLREIAETGGASFYQGELARRIADFAR FT QTGGALREQDLAEHRPEWVEPISQSFRDYELHEIPPNGQGIAALMALGMLEQFDLEAMG FT RDSADYYHVSIEAMKLAFADLHQHVTDPRHMRVNAAALLDPAYLAERARLISMDRSSVP FT AAGAPATGGTVYLTAADADGTMVSFIQSNYHGFGSGVVVPDTGISLHNRGMNFVLTPGH FT VNQVAPRKKPMHTIIPAFMTRKGQPAMSFGVMGGSMQAQGHLQMATRLAAFGQNPQAMS FT DAPRFRVENGPVVNVEAHLPADVVQTLRDRGHNVAVAPADSLEFGSAQLICRLPEGGYL FT AASDSRRDGQAVGF" FT misc_feature complement(1704917..1706392) FT /note="HMMPfam hit to PF01019, DE FT Gamma-glutamyltranspeptidase, score 3.4e-182" FT misc_feature complement(1706402..1706497) FT /note="Signal peptide predicted for BB1598 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.790) with cleavage site FT probability 0.567 between residues 32 and 33" FT CDS complement(1706520..1707491) FT /transl_table=11 FT /locus_tag="BB1599" FT /product="putative exported protein" FT /protein_id="CAE32096.1" FT /translation="MKFRLLQALAAVSIAFAGQAGASGTDWPQHPVKIVVPFQAGSATD FT LISRQLGAALAKELGQPFVIEARPGAAAAIGSAAVARAEPDGYTLLMGGPAAIVTNRYL FT QKRLSYDPDSFELVSMVAYTPNILLANPSQPFKTLPEMVAYAKANPGKLTYASFGTGTT FT SHMAGEMLKSVAGIDILHVPYKGAGEAIPALLSGQVSMYFDTIMTGLPQVNSGALVALG FT MSNAQRSAMAPQIPTIAEQGYSGYDIAPWYGLVAPHGTPAPVLDKLNQAVNKVLADPAL FT RNKLAETGAEPQGGSREQFAAFIKAELPRTRKLVEQAGITPQ" FT misc_feature complement(1706532..1707353) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4e-100" FT misc_feature complement(1707426..1707491) FT /note="Signal peptide predicted for BB1599 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.955 between residues 22 and 23" FT CDS 1707679..1708335 FT /transl_table=11 FT /locus_tag="BB1600" FT /product="Putative GntR-family transcriptional regulator" FT /protein_id="CAE32097.1" FT /translation="MLQFQKTAVSAEEEAYQYLQQEIRLGRYAPGQRLVPEAIAGEIGT FT SRMPVRGALRRLASEGLVEIRANRGAVVRGLNRQEMLEVFEMRSVLEGLAVRNALANLG FT DEHIRRLSSMLDQMEAGSGDYLDWTTAHREFHEYLCSFCRQPRLLRQISELHSVVEPYM FT RLWAAQPGRSLRARESHQELIDALKTRDAARAEAAARQHVLNTVPVLQDFLAQAG" FT misc_feature 1707721..1707897 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 3e-11" FT CDS 1708451..1709728 FT /transl_table=11 FT /locus_tag="BB1601" FT /product="Putative membrane protein" FT /protein_id="CAE32098.1" FT /translation="MLDSVLAPWALTGRLWLRFWPQLMALVAAGVLAHGLLMWLAVHTG FT FANHLAGLAVLTLVALSQLVVTVAMFLVVLPGLPALRAAQQAARAGEDSARPGMARLAR FT IITVALLPFFAYYAAWGFLGNTVRQYSRLAIHLDPLGTHGNVLDALDSRWLLVSVAVSW FT LVRRIALRARDRTRQPGWQLLVVLCETNWILVGLYVISRWKDQAWQWLLAQRDWSAVLD FT FWQRLLTPLANAWSAGMVPAEAEAVGWGATLVNLFFYALLPVVWLVMVALIYGYDVRED FT AELRRVRRLERLGQRYQSVPRFLRDFVEHFIGGYRKRYLPLANGVRLAFHSGAVLLVTL FT IVGYRLIDWGAAWLWYGAARLIGPHPLDSWQILGDALSVLFGSPFRDSSTGLLIEPLRI FT CFLAAVLECAFSPWQARRAASPALAA" FT misc_feature join(1708508..1708576,1708595..1708663,1708754..1708822, FT 1708991..1709059,1709216..1709284,1709423..1709491) FT /note="6 probable transmembrane helices predicted for FT BB1601 by TMHMM2.0 at aa 20-42, 49-71, 102-124, 181-203, FT 256-278 and 325-347" FT CDS complement(1709730..1710293) FT /transl_table=11 FT /locus_tag="BB1602" FT /product="Conserved hypothetical protein" FT /protein_id="CAE32099.1" FT /translation="MNAPGTAERTWRRRSLWLLPAVLALSLAWRNDDNVPQWLVNRELR FT PRDVPAQAQGALGGAQWKLLEFGIIDAPARRGWLPGSRASYAAFEVQVQADDLPRRWQA FT CRIALHDARGRVWRPATEPVLRMAPHMARGCLAAAHRGVPPGSKLTIMEVFMLPPDVAR FT PLTLSVSVGSERPAYLRFAVPAAD" FT CDS complement(1710290..1710871) FT /transl_table=11 FT /locus_tag="BB1603" FT /product="Putative exported protein" FT /protein_id="CAE32100.1" FT /translation="MSARLGTLALLLLAALALYGMQRSTPRYLDLTGPIVERGAMGEAV FT RTRQFDATVQRVQFARQLRYRSLGRERVRETAGVWAVVWVRLAALDASTQVGEAAWLGP FT DALTYRHTDRLGLAPGVPPYMLDPGLPRTVRLVFEIRPDQARGATLLLSERYSPRLDSQ FT ARIALDDVPVGADGRPETVASHDLDQDAIP" FT misc_feature complement(1710806..1710871) FT /note="Signal peptide predicted for BB1603 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.559 between residues 22 and 23" FT CDS complement(1710868..1711458) FT /transl_table=11 FT /locus_tag="BB1604" FT /product="Putative exported protein" FT /protein_id="CAE32101.1" FT /translation="MRVLHSLKARVVTGVAGIGSLAAAASVALYGAYDGTRAAAEPVFG FT AGSTVQTGQWRLVPHAAWLASGKVYEVWVKPGHSALVVEAELTNRTAESSHDYLDLLQW FT RAPPGVTPAQPAVVSVRDPQQGPALHPGLPERVAFVWPLPAGVAPPPQAAFAVESKTYK FT PVDNLYGTPGWYNPVLIGRVELPVRAHAPQDPR" FT misc_feature complement(1711360..1711428) FT /note="1 probable transmembrane helix predicted for BB1604 FT by TMHMM2.0 at aa 11-33" FT misc_feature complement(1711384..1711458) FT /note="Signal peptide predicted for BB1604 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.571 between residues 25 and 26" FT CDS complement(1711631..1713004) FT /transl_table=11 FT /locus_tag="BB1605" FT /product="putative exported protein" FT /protein_id="CAE32102.1" FT /translation="MTTMMNRRRFIQGAAAGMTLAAPLGLAAQAAGQAAARGTLAPQGF FT WPGGVEKPLMPYTPAIKAAGWLFIAGQLASDFETGVAPQVRSDGTFAEQLTLQSRFVMS FT NVARTVAAAGLDLGRDTARLWQWLTSPHPTMDEFARGNNWPRIPVQAHFAERDAFLAAP FT GPASTAMGVKALMVKDTLLEIDLLCVDDGGRNVGVEQPARQPGQAGAVRRGDWVFLSSE FT SWQRMPAGAGTQQQTDQVLRHLARLAQAAGSSLRRAVKAEVYIGHPSEYAAMEAAWKRW FT FPDNPPARVVMPYMGLAGGQGRRVEIALTLLAEDSRKTIETVYTSKAPKPFSHEPQAVK FT AGNLLFFSQQMPADASGALAEGMARHPNFPYYGLPARQQMAYMLKNVAAICEEAGTTLD FT NVVRRVCFHDQGEHFAEAMDEWAAHFPGLKPVSTTLVLGGPLAVRGAHTLLDITAYAP" FT misc_feature complement(1711637..1712032) FT /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP, FT score 4.1e-05" FT misc_feature complement(1712066..1712404) FT /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP, FT score 1.6e-05" FT misc_feature complement(1712435..1712866) FT /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP, FT score 0.00041" FT misc_feature complement(1712915..1713004) FT /note="Signal peptide predicted for BB1605 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.936 between residues 30 and 31" FT CDS complement(1713075..1714139) FT /transl_table=11 FT /locus_tag="BB1606" FT /product="Putative oxidoreductase" FT /protein_id="CAE32103.1" FT /translation="MTSLWDPIQIGRMNLAHRLAMSPLTRSRAQDDGTPGELAAEYYAQ FT RASLGLLISEGTQPSADGQGFLNSPGIYSEAHVAGWRKVADAVHAAGGHLYIQVMHAGR FT MSHPANTPHGRQAVAPSAIAPEAQIHTPTGMQQVPAPRALSPDEIQATVRDYRHAAARA FT IEAGADGVEIHGANGYLIQQFLSPNANHRDDAYGGPVAHRTRFALEVAAAVAEEIGADR FT TGIRLSPGSRLGGIDEGPHYGDMYRHLVAGLAQLKLSYLHIAHNGDEALLKDLRQLWRG FT PLLVNRVNRPIELIGQDVETGLADIAPVGRWALANPDFVARLRAGQPLNPPDQATFYGG FT GARGYTDYPRLAMR" FT misc_feature complement(1713150..1714133) FT /note="HMMPfam hit to PF00724, DE NADH:flavin FT oxidoreductase / NADH oxidase family, score 1.6e-81" FT CDS 1714239..1715165 FT /transl_table=11 FT /locus_tag="BB1607" FT /product="Putative LysR-family transcriptional regulator" FT /protein_id="CAE32104.1" FT /translation="MVCLKNGSNMDLSALADFNLVAAHGGFGKASRSSGRPKATLSRRV FT MDLEQSLGVRLLERGARSLRLTEEGQALHERTCGPLGEIIEAGESVAAGLSAPRGRLRV FT SAPVLFSSTLLGRIAAGFAQAYPEVRLDVVAEDRNIDLVDDGYDVAIRVNPRPDAALVG FT RCFARDDMLLVAPPALARPAAAADGQAPTVPAVALANVFDSGAWHYQDGDTLNTVMPDV FT RLRLSSLLMIRDAVQAGAGAALIPRSLLAQGGAHASLAVWGRIPDRPVELWVLHNSRRL FT VSTKVAAFVEYLCAAFPARTLTGRAAA" FT misc_feature 1714272..1714451 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.8e-16" FT misc_feature 1714314..1714406 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1714521..1715123 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.3e-30" FT CDS 1715407..1715862 FT /transl_table=11 FT /locus_tag="BB1608" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2265" FT /protein_id="CAE32105.1" FT /translation="MRPTQARLAMTDTAYHQLIADFGRLIGIDSLNPGAGGLCQLIFEP FT CAPVFIAPVHARAEIMISCVLGTADTVNPASMARANFMQAGSGVVACIGGDGLSYLQQA FT IPLSRATPAILLDHCERLLQEASRWRVGDHDGCASSAPNIAALTRGV" FT CDS complement(1715899..1716165) FT /transl_table=11 FT /gene="bscF" FT /locus_tag="BB1609" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2264" FT /protein_id="CAE32106.1" FT /translation="MAINLGGDAGRVTMQSVNQAVNTRLNAHERDLRSRLEALSARGDG FT AVSTSDLLIVQQEMQSWVVMIDLQSTVVKQVADSLKGVIQKAS" FT misc_feature 1715902..1738519 FT /note="type III secretion system locus" FT CDS complement(1716155..1716454) FT /transl_table=11 FT /gene="bscE" FT /locus_tag="BB1610" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2263" FT /protein_id="CAE32107.1" FT /translation="MNTSVLALTELEVRLASPGGSALRDTLLSQLGELETRLRVRLHDG FT VGRDTYPVWRDALAAATAARQVLLQRPTGPDNPPASVLTRLSNEQCAEGDKHGH" FT CDS complement(1716495..1717775) FT /transl_table=11 FT /gene="bscD" FT /locus_tag="BB1611" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2262" FT /protein_id="CAE32108.1" FT /translation="MTAALEFRVLSGAQCRARCPAVHGARVGANPHCDIVLTGEDMPEV FT AGWLEIDQSGWRLAGAMTPGLDAQAPCPPAAFNEPVQLGATWITVAAPSAPWPAPPEPR FT GPDGSATALHDAPGSTSPPSVDALMPRRRAGRPWLALGAAAAVLLVGLATALVSVTTPA FT APPAAPPPTSAAPLIRAAALIDSLGLAEQLQAAYGRGGVLTVTGWVHDETEFARVARAL FT AQLAPRPAMQVSRQDEARALACDVLATFGVRYMARPYGNGRLAISGIASDAHERAAALH FT AVRMRLPGMTILGRDVRLADEVSAQFAAQLADERLDGVKLSWHADRLDADPGGLAAGRM FT ARLRELVAAFNQRNYDVVRLPATAARATRDHVPFEIRSVVSGPQPYLMLADGSRLLVGG FT LRDQYRLTAIESGRLVFDGPEPVIVTR" FT misc_feature complement(1717296..1717364) FT /note="1 probable transmembrane helix predicted for BB1611 FT by TMHMM2.0 at aa 138-160" FT CDS complement(1717772..1719871) FT /transl_table=11 FT /gene="bcrD" FT /locus_tag="BB1612" FT /product="putative type III secretion pore protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2261" FT /protein_id="CAE32109.1" FT /translation="MTSKKSILRLQRAVALATSRNDIVLAVLIVAIVFMMILPLPTTLV FT DVLIGANMTLSAVLLMVAMYLPSPLAFSSFPSVLLVTTLFRLGISIATTRLILLQGDAG FT HIIETFGNFVVGGNLIVGLVVFLILTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSI FT DADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIVAVNLLGGMLV FT GVLQRGLSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDGPSNVGTDIG FT AQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQRPPEGAGPA FT LAGMAADGLPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFD FT LGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAYETG FT AAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQETRFLL FT SAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKEKDTVL FT LTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRR FT LVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINVQPL FT GRVDL" FT misc_feature complement(1717799..1719781) FT /note="HMMPfam hit to PF00771, DE FHIPEP family, score 0" FT misc_feature complement(join(1718915..1718983,1719080..1719148, FT 1719191..1719259,1719464..1719532,1719575..1719643, FT 1719662..1719730,1719743..1719811)) FT /note="7 probable transmembrane helices predicted for FT BB1612 by TMHMM2.0 at aa 21-43, 48-70, 77-99, 114-136, FT 205-227, 242-264 and 297-319" FT misc_feature complement(1719374..1719445) FT /note="PS00994 Bacterial export FHIPEP family signature." FT misc_feature complement(1719740..1719871) FT /note="Signal peptide predicted for BB1612 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.682) with cleavage site FT probability 0.399 between residues 44 and 45" FT CDS complement(1719868..1720236) FT /transl_table=11 FT /locus_tag="BB1613" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2260" FT /protein_id="CAE32110.1" FT /translation="MMPHTLPYPSLQVRELLQLLAHHYQLQRQWSKTVALLAALDALDA FT IDSRSLLALALGYLHQDEPRMALVTLDKRALRATPDAAGHLVRAQAMQALNRPDDARQA FT MRDYMALRAASCASAPPP" FT CDS complement(1720233..1720643) FT /transl_table=11 FT /locus_tag="BB1614" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2259" FT /protein_id="CAE32111.1" FT /translation="MSSAVPGMHAMHLGLERGVDHIVPGPRCEPAPTLPPERWLEPPAT FT GAVDHLKALLVRPDLSAMLDESARPRLTDGALLQPAQFERALARARDELSRAMELHAGN FT TAPALSRALHVLNEAGKLRDLAAMYRSALYQG" FT CDS complement(1720648..1721025) FT /transl_table=11 FT /locus_tag="BB1615" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2258" FT /protein_id="CAE32112.1" FT /translation="MNTADKALHQFGQDIGIEGLAFGPSRSASLALSNGRRLGVECVAG FT AALVHLAQRAERDAASVLLAAWKRAHGQRGGAASIQTSLWSEDSEDWIVAQTRLPERSL FT DAAALRLAVLGLTNWLDRLEA" FT CDS complement(1721022..1722119) FT /transl_table=11 FT /gene="bopN" FT /locus_tag="BB1616" FT /product="putative outer protein N" FT /note="ortholog of Bordetella pertussis (BX470248) BP2257" FT /protein_id="CAE32113.1" FT /translation="MTRIDAAPNPFHAAMQGRHDASANTSSGWLQGQRIAPAPTGISLA FT DAAEELSLHMAQAAEEKHHSERKVTAERPMLWLDAAQLAELFSHTHDPDAQAKLEALTA FT ELLRGRGAPMQLAAQAFTGVTQQYLALQHALQRGEHEDAAPHALEALRDALADLELAHG FT PEIRAGINTLPTAGAFARSADELAGFQHAYRDIALGQLSLARTLDLVLERYGNDDIHGA FT LGALIQALGHDLAAATPSTDGVRLQVLASDLYQVEVAATVLEECNALKQRLGNAGSQEC FT ADAQGLMRDLVGISEDKWIAPARFEKLAERHGANALSERIAFLGGVRQILKDLPTQIYA FT DMDVRATVLAAAQDALDNAIAMENA" FT CDS 1722283..1722900 FT /transl_table=11 FT /gene="bsp22" FT /locus_tag="BB1617" FT /product="putative secreted protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2256" FT /protein_id="CAE32114.1" FT /translation="MTIDLGVSLTSQAGGLQGIDLKSMDIQTLMVYVQGRRAELLTAQM FT QTQAEVVQKANERMAQLNEVLSALSRAKAEFPPNPKPGDTIPGWDNQKVSRIEVPLNDA FT LRAAGLTGMFEARDGQVTAPGGRGTQVVNGTGVMAGSTTYKELESAYTTVKGMLDTASN FT TQQMDMIRLQAASNKRNEAFEVMTNTEKRRSDLNSSITNNMR" FT CDS 1722923..1723198 FT /transl_table=11 FT /locus_tag="BB1618" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2255" FT /protein_id="CAE32115.1" FT /translation="MQEQDIQSIMRAAEELVEQTRKALCSVDEIYAHVGVDPARLRNLA FT VEQARIEAEAQAAFRDDLADIEREAARVKAASTDAPQARRVLHNHV" FT CDS 1723214..1723699 FT /transl_table=11 FT /gene="bcrH1" FT /locus_tag="BB1619" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2254" FT /protein_id="CAE32116.1" FT /translation="MPKSAEQGGSPASASHEALRHILDAGASMGSLQGLDEVQQQALYA FT IAHGAYEQGRYADALKMFCLLVACDPLEARYLLALGAAAQELGLYEHALQQYAAAAALQ FT LDSPRPLLHGAECLYALGRRRDALDTLDMVLELCGSPEHAALRERAESLRRSYARAD" FT CDS 1723747..1724688 FT /transl_table=11 FT /gene="bopD" FT /locus_tag="BB1620" FT /product="putative outer protein D" FT /note="ortholog of Bordetella pertussis (BX470248) BP2253" FT /protein_id="CAE32117.1" FT /translation="MSVSPTSPGSFGAGPVFDSELQAPAPSAQRRGGAAPVPPPVDRRG FT VEPGDPTLGMLPAPDLLAGGAVSRTRAALDDLDAARLGEDIYTLMAVLQQASQQMREAA FT RIARDAEATRQTQALGDAASQMRQAANERMAGAIVAGAMQIAGGFVQLGAGLAAGLQAM FT GGAAAQAKGAAFSEQASTSRKVAAGLHDAPELQATVQARATQLEAQAASFGADAARSSA FT KSQRVSSVAQAGAATAGGIGGLTSAAQERRAAEHEARRAELDVEAKVHETASRRADEAM FT QQMLDIIRGIREKLAGMEQSRSETARSVARNI" FT CDS 1724718..1725920 FT /transl_table=11 FT /gene="bopB" FT /locus_tag="BB1621" FT /product="putative outer protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP2252" FT /protein_id="CAE32118.1" FT /translation="MTVMSTTISTAPSGAALAPSRIDMRAPEPGSAGEGAGILAPVTTL FT ALAAGRPAFPASPSLRTAPVLDPPVRDLSPADLADLLRVLRSRAVDGQLATARENLQDA FT QVKAKQNTQAQLDKLDAWFRKAEEAESKGWLSKVFGWIGKVLAVVASALAVGFAAVASV FT ATGAAATPMLLLSGMALVSAVTSLADQISQEAGGPPISLGGFLSGLAGRLLTALGVDQS FT QADQIAKIVAGLAVPVVLLIEPQMLGEMAQGVARLAGASDATAGYIAMAMSIVAAIAVA FT AINAAGTAGAGSASAIKGAWDRAAAVATQVLQGGTAVAQGGVGVSMAVDRKQADLLVAD FT KADLAASLTKLRAAMEREADDIKKILAQFDEAYHMIAKMISDMASTHSQVSANLGRRQA FT V" FT misc_feature 1724718..1724771 FT /note="Signal peptide predicted for BB1621 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.784) with cleavage site FT probability 0.466 between residues 18 and 19" FT misc_feature join(1725153..1725221,1725510..1725578) FT /note="2 probable transmembrane helices predicted for FT BB1621 by TMHMM2.0 at aa 146-168 and 265-287" FT CDS 1725944..1726405 FT /transl_table=11 FT /gene="bcrH2" FT /locus_tag="BB1622" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2251" FT /protein_id="CAE32119.1" FT /translation="MTVHDDAAAALRARLDALPGSRRLTAEQLEVIYAMAYAHVARCEY FT GKALPIFAFLAQYGPTRKHYWAGLALCLQKTDRPDEARNIYALILTLYPDSADAVLRTA FT ECELALGENERAQAALFGAIAIDAESGQPGPVSHRARALLDLISVSHPE" FT CDS 1726410..1726931 FT /transl_table=11 FT /gene="bcr4" FT /locus_tag="BB1623" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2250" FT /protein_id="CAE32120.1" FT /translation="MHSDSGSDSGSDSGSGSPMASSIHPSEPIQPMEHVLEEADARLLT FT EVGFLAAAVSDLTRADAIFNALQRVRPGRTYPCIGLAVARMNAGLPDEAAEILANFQPA FT QAEDRSELDAWCGFALLLAGRSDEARRMLQRAIDAGGEAARLAQVVLDSGPAMMRPAPL FT QSEPLPGAPG" FT CDS 1726928..1727356 FT /transl_table=11 FT /gene="bscI" FT /locus_tag="BB1624" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2249" FT /protein_id="CAE32121.1" FT /translation="MNLDLTAINAVQERLLARSFDMPRSPAMADQARFELALGEMPGAS FT APNGAIAPAPAEGPAAPVALGEPLGRRILGQLRGGLADVAGKWRAVQTGLAEVSQAPTV FT VGMLDLQARLLQASVEYELVGKAIGRATQNVDTLARMS" FT misc_feature 1727165..1727200 FT /note="PS00213 Lipocalin signature." FT CDS 1727353..1728177 FT /transl_table=11 FT /gene="bscJ" FT /locus_tag="BB1625" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2248" FT /protein_id="CAE32122.1" FT /translation="MNAIGAIQRYRRGAGWAALALALALLAGCGARVELLGAAPENEAN FT EVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQFDGMGRIFRKEG FT LVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGEPATPSTAGVFLK FT YRDGQSLDALVPEIRKLVTHAIPGLAEDRVSVALVVAQPVQAAPVPVAWRRVLGVQVAD FT GSVLRFSLLLLLLPVLCLIVAGATLYAWRTRWSRGEGRGGAGAGATEGAGHD" FT misc_feature 1727353..1727445 FT /note="Signal peptide predicted for BB1625 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.927) with cleavage site FT probability 0.216 between residues 31 and 32" FT misc_feature 1727353..1727970 FT /note="HMMPfam hit to PF01514, DE Secretory protein of FT YscJ/FliF family, score 6.6e-101" FT misc_feature join(1727389..1727457,1728034..1728102) FT /note="2 probable transmembrane helices predicted for FT BB1625 by TMHMM2.0 at aa 13-35 and 228-250" FT misc_feature 1727407..1727439 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1728170..1728832 FT /transl_table=11 FT /gene="bscK" FT /locus_tag="BB1626" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2247" FT /protein_id="CAE32123.1" FT /translation="MTEKSVLLSERLMIFNLLPSLTLHASRHDETFPADWVRALCNADA FT ALANAWHRHWSRWILCELGLLNQPVLSLDPPQLKVALLSTDALRTCAAHAGALLCAPRL FT RRAIDGAEVRTLHAALGRDVMNFAVSSAARALHDGIAASSDWTLAATVQAAQKLGWALL FT RDAVQGAADEIALRCALKLPRDLDPAPVLPPEAALALVLSMLEILDAEWLSSFPAQA" FT CDS 1728877..1729440 FT /transl_table=11 FT /gene="bscL" FT /locus_tag="BB1627" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2246" FT /protein_id="CAE32124.1" FT /translation="MRAEDYAELLSAAQIVAQAHRRADEIVAEAREEFERERRRGYEEG FT RREALTDQAEKMIETVSRTIDYFAGIENEMIELVMSAVRKIVDGYDDRERTVIAVRNAL FT AVVRNQRQMTLRLHPDEVDVLREGMNQLLAAYPGVGYLDLLPDARLTPGACILESEIGM FT VEASLEDQLCALRAAFERTFGRRG" FT CDS 1729445..1730779 FT /transl_table=11 FT /gene="bscN" FT /locus_tag="BB1628" FT /product="putative ATP synthase in type III secretion FT system" FT /note="ortholog of Bordetella pertussis (BX470248) BP2245" FT /protein_id="CAE32125.1" FT /translation="MRQYHYITEMMRVALQDLSTLRIKGRVVQVVGTIIKAVVPMVKIG FT EVCLLRNPGEDFEMHGEVVGFVRDAALLTPIGDMYGISSATEVIPTGRTHMVPVGPGLL FT GRVLDGLGRPLDVAESGPLHAHKFYPVFADAPDPLTRRIIHAPLELGVRVLDGLLTCGE FT GQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGREVREFLEHELGPEGRRKSV FT IVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSVTRFARAQREIGLAAGEPP FT TRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMNEPVADETRSILDGHIVL FT SRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMAKYQDVELLVKIGEYKQ FT GADASTDEAIQKIGQINAFLRQLTDEREAFEDTVLRMAEIIGPES" FT misc_feature 1729523..1729720 FT /note="HMMPfam hit to PF02874, DE ATP synthase alpha/beta FT family, beta-barrel domain, score 2.6e-07" FT misc_feature 1729727..1730542 FT /note="HMMPfam hit to PF00006, DE ATP synthase alpha/beta FT family, nucleotide-binding domain, score 3.2e-151" FT misc_feature 1729955..1729978 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1730495..1730524 FT /note="PS00152 ATP synthase alpha and beta subunits FT signature." FT CDS 1730779..1731288 FT /transl_table=11 FT /gene="bscO" FT /locus_tag="BB1629" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2244" FT /protein_id="CAE32126.1" FT /translation="MDLESLLAIKHFRADQAQLALKRQQQACAVAAAAQRQAQGRLDDC FT RLWAGQLENRLYAELCRRIVKTRDIDEVLQRVGHARDRQASLALQLDDAVRRHEHEIQL FT LAQQREQHRECFQAQQRIAELVRLQQVEAAALRESLEDREIQEAIELSARGRDDASRAG FT DGLARL" FT CDS 1731285..1731833 FT /transl_table=11 FT /gene="bscP" FT /locus_tag="BB1630" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2243" FT /protein_id="CAE32127.1" FT /translation="MNQPDGLGSPMAGGGQRMGVARTPYARQPDRDAQRAFEREMEQEK FT AKEELSGSQRLAPGPACVGWLASVEPAAGRPPASLAQALASVAAGLAVGDVLEGHREAR FT IVVDDTLLPDTTLSLREDGGWIVVAFACRQRDACERLHACADRLAMELALELARDVEVT FT VACDGEPHERVARAQRPWR" FT CDS 1731830..1732909 FT /transl_table=11 FT /gene="bscQ" FT /locus_tag="BB1631" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2241" FT /protein_id="CAE32128.1" FT /translation="MNRVAGGAAAQAAGMVDLAVPRLSAGEAHALSRIACHGARFDVRL FT GEPAVCWHCALTPCVHGDLADGEMESLQLQWAGTYIGLTVPRAAAAGWLAARLPRFSGV FT ELPEPIAAAALEAMLEDVCRGMAGLDQQGPVRVARQGGKPPVQPHRWTLTVRAPDGSVW FT RAVLACDAWALQAVAAALDSVALADGPVNPERVPVRLRADVGAASVAAGQLRTLRAGDV FT VLLAQYRVNDAGELWLSAGPSAIRVRAEHASFRVTQGWTPIMTEPATPDPGETPAQAEA FT TLDTDQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRL FT VDIDGRIGVVLQSVRPGLA" FT misc_feature 1731830..1731865 FT /note="Signal peptide predicted for BB1631 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.637) with cleavage site FT probability 0.212 between residues 12 and 13" FT misc_feature 1732670..1732900 FT /note="HMMPfam hit to PF01052, DE Surface presentation of FT antigens (SPOA) protein, score 1.8e-08" FT CDS 1732906..1733577 FT /transl_table=11 FT /gene="bscR" FT /locus_tag="BB1632" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2240" FT /protein_id="CAE32129.1" FT /translation="MSDTDPFSLALFLALLALVPLIVVMTTSFLKIAVVLALVRNALGV FT QQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQAGESGTAAPMALDAVLGVVER FT GVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSEDNLLVLTPAFLVSELTAAFQ FT LGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFLFVMVDGWTRLIQGLVLSY FT R" FT misc_feature 1732906..1733016 FT /note="Signal peptide predicted for BB1632 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.958) with cleavage site FT probability 0.258 between residues 37 and 38" FT misc_feature join(1732933..1733001,1733062..1733130,1733347..1733415, FT 1733434..1733502) FT /note="4 probable transmembrane helices predicted for FT BB1632 by TMHMM2.0 at aa 10-32, 53-75, 148-170 and 177-199" FT misc_feature 1732939..1733562 FT /note="HMMPfam hit to PF00813, DE FliP family, score FT 3.3e-103" FT misc_feature 1733500..1733538 FT /note="PS01061 Flagella transport protein fliP family FT signature 2." FT CDS 1733574..1733849 FT /transl_table=11 FT /gene="bscS" FT /locus_tag="BB1633" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2239" FT /protein_id="CAE32130.1" FT /translation="MTSMQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALT FT QVQEQTLSFAVKLIAVFATLMLAARWISAEIYNFTIAVFDAFHRIH" FT misc_feature 1733574..1733666 FT /note="Signal peptide predicted for BB1633 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.816) with cleavage site FT probability 0.787 between residues 31 and 32" FT misc_feature 1733592..1733819 FT /note="HMMPfam hit to PF01313, DE Bacterial export FT proteins, family 3, score 4e-32" FT misc_feature join(1733628..1733696,1733724..1733792) FT /note="2 probable transmembrane helices predicted for FT BB1633 by TMHMM2.0 at aa 19-41 and 51-73" FT CDS 1733861..1734661 FT /transl_table=11 FT /gene="bscT" FT /locus_tag="BB1634" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2238" FT /protein_id="CAE32131.1" FT /translation="MHTEFNFVEAKVFLGTLAMTQPRILAAMLFLPMFNRQFLPGPLRY FT AVGACLGLIVVPQLAPQYAALDIGWPRLLALLAKEAMVGMFLGWLAALPFWIFEAIGFV FT IDNQRGASLGAILNPATGNDSSPLGILFNLGFMVFFLTAGGFGLFATMLYDSFGLWDIW FT AWWPSMPAQGAVRMLDQFSGFAARVLLLASPAIVAMFLAELGLALISRFAPQLQVFFLA FT LPVKSALVLLVLVLYMATLFQYAGEILGSVGRIVPFLHSAWPGS" FT misc_feature 1733888..1734628 FT /note="HMMPfam hit to PF01311, DE Bacterial export FT proteins, family 1, score 2.6e-59" FT misc_feature join(1733894..1733962,1734107..1734175,1734248..1734316, FT 1734410..1734478,1734515..1734583) FT /note="5 probable transmembrane helices predicted for FT BB1634 by TMHMM2.0 at aa 12-34, 83-105, 130-152, 184-206 FT and 219-241" FT CDS 1734658..1735707 FT /transl_table=11 FT /gene="bscU" FT /locus_tag="BB1635" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2237" FT /protein_id="CAE32132.1" FT /translation="MSGEKTEQPTPKRLRDSREKGEVAHSRDFTQTALICALFGHFLIN FT APSILASLRALILAPAAFADQAFAVALGPVLTEILDQAVRVLAPLILIVLGVGMFAEFL FT QVGVVLAFRKLKPSAEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRDSLQ FT PLMAVPHSGLDGLRTGVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVK FT QEYKEMEGDPHIKQQRKHLHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLP FT RVLAMGQGAVAALMVEAARDAGVPVMQNVALARALHDQAEVDQYIPGELVEPVAAVLRA FT VRQALKEQT" FT misc_feature 1734658..1735683 FT /note="HMMPfam hit to PF01312, DE FlhB HrpN YscU SpaS FT Family, score 9e-123" FT misc_feature join(1734763..1734831,1734925..1734993,1735063..1735131, FT 1735204..1735272) FT /note="4 probable transmembrane helices predicted for FT BB1635 by TMHMM2.0 at aa 36-58, 90-112, 136-158 and FT 183-205" FT CDS 1735704..1736102 FT /transl_table=11 FT /gene="bscW" FT /locus_tag="BB1636" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2236" FT /protein_id="CAE32133.1" FT /translation="MTATIHPDIADYARRHGLDPSVDADGGLAVRIDGRHRVRLIPAED FT GMLMLRARLAELPDGWQARAAQLRQAGLLASAMAPATDAYCGIDQGETALYLHQRVAPA FT GSALAVDEAVGEFVNALATWKRAMAQWQ" FT CDS 1736093..1737895 FT /transl_table=11 FT /gene="bscC" FT /locus_tag="BB1637" FT /product="putative type III secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2235" FT /protein_id="CAE32134.1" FT /translation="MAIGRLGYLVRGAWAGGVMLLAAGSAWAAPNWPLAPYSYYAQQQS FT LSDVLREFAAGFSLALQQGKGVQGVVNGRFNARTPTEFIERLSGIYGFNWFVHAGTLYV FT SRTSDVVTRAVDAAGASPSALRQALLQLGILDERFGWGELPAQGVAMVSGPPAYVALVE FT QAVAALPKGAGNQQVAVFRLKHASVSDRVIRYRDQQVVTPGMATMLRQLILGAGPGNDA FT ALAAVAAPLRENPPVFGDAAADGKAPLAGAAQAAGRRLSEPSVQADTRLNALIVQDIPE FT RMPIYRALIEQLDVPSTLIEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPG FT NGLPVDGAAAELAPGTLGISVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLS FT DTFYIRTLGERVATVTPVTVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGL FT PRVRKSSISTLAVVGDEQTLLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQR FT RERLFLIRPRVVAIEGKPVFSPVAGTSQVFMSTGWGGHGSSLSIAPGESGHTQVRHDAR FT AGRRVRLVPDGLHVEYGEAGEASP" FT misc_feature 1736093..1736176 FT /note="Signal peptide predicted for BB1637 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.999 between residues 28 and 29" FT misc_feature 1736111..1736179 FT /note="1 probable transmembrane helix predicted for BB1637 FT by TMHMM2.0 at aa 7-29" FT misc_feature 1736126..1736755 FT /note="HMMPfam hit to PF03958, DE NolW-like, score 2.1e-58" FT misc_feature 1736885..1737682 FT /note="HMMPfam hit to PF00263, DE Bacterial type II and III FT secretion system protein, score 1e-71" FT CDS complement(1737917..1738519) FT /transl_table=11 FT /gene="brpL" FT /locus_tag="BB1638" FT /product="putative RNA polymerase sigma factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2234" FT /protein_id="CAE32135.1" FT /translation="MVSPPSSGLPASLEKPDNAYPDIATERSDQQLLSSLVAEHAGRLQ FT RFIAKHIGHSSDVEDLAQQAFAEAARAYQSFRGDSQLSTWLYGIALNLVRNHLSRAPER FT RYEFTSDASLGVMPCSAPNPEAVTEQRQRMRLLREALEQLPESMRDVILMVGVEELSYE FT EAAALLSVPVGTIRSRLSRARCALREALRERGYDSVP" FT misc_feature complement(1737977..1738042) FT /note="Predicted helix-turn-helix motif with score FT 1314.000, SD 3.66 at aa 129-150, sequence FT LSYEEAAALLSVPVGTIRSRLS" FT misc_feature complement(1738217..1738384) FT /note="HMMPfam hit to PF00776, , score 6.4e-16" FT CDS complement(1738694..1739374) FT /transl_table=11 FT /locus_tag="BB1639" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2233" FT /protein_id="CAE32136.1" FT /translation="MEPKSRKRHTVHIPYSMFPLRRTRYTQGFETTAHRMNFQIPPALP FT ALELDVFARAASQGETLYVTKAGEQFQVIASGTTPSGRNVSWVATDEDTLVMFSSALAL FT AYGTGIARAVAKELDLHAAPTTSLSARVVTRAVDMAETSRHALQGVDFLTFLSWSARAD FT TAGFRQVCHDTGVSPDQISGTLRATIDESMQQRFASAAQSGKAPVSAHTAQEWLREVLA FT HHLM" FT CDS 1739436..1740920 FT /transl_table=11 FT /locus_tag="BB1640" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2232" FT /protein_id="CAE32137.1" FT /translation="MNAAQSVGHTLGLELEMVVACRATGASHPVARHFESLRNLRRQRG FT ESVQECRLGARLCGVGGPHGLSGLDNGYNLLETAFAPVNGGAGGLRRLAEAVRRELRDT FT QLALAAEGAMLINAAEHPAASLDADWYRRVRVPRPIYEELVGQRGWLHRIGIDAKAQNS FT PCTSVPVAIAARCLNVVLALAPAQIAMFANSPLEAGRVTGLKENRLTLWPRMFRGARYL FT GDDLLHRLPARPFRDLGDYFRWMFGGLTSSRALPPGDACDYKNADVACLVGAPSLAEFL FT YAGAWPARNLNDGGSVRLAARSEHFVYSQFAQFLDARWRYRMPIVPALPALLRAWDRQG FT GLEALFEQAGAQGYIEGRAPGAVFADADLLRSAGDAVAASAPMAASALQLGLLRNLHDA FT ETLVRRWGWLRLRALRDRAIALALDDAQVRCLCQQVVAVAEGGLAGDEQQWLDYVRYVV FT ETGETAADRMLRLWRQARGTPEMRRAQVCRQRAVLS" FT CDS complement(1740962..1742149) FT /transl_table=11 FT /locus_tag="BB1641" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2231" FT /protein_id="CAE32138.1" FT /translation="MTLRPGILAPLALLLGLAWPIAAASSPPPVAALSSDVALTSPRLP FT PPSHTSGRKWRIGYVGSGEYEEYPRTLYAIARALQQLGWLHIDDMPEITDMRKAWLYLA FT THARSNYIEFVPDAWWQPGNFDTALRPAVREAVAARLRGAKDIDLIIAMGTWAGQDMVE FT LGTPVPTVVVSSTDPISARIIPSAADSGQDNLHARVQPDHYQRQIQLLHDIVPFKTLGL FT VYEDTEAGRTYAAIDKVAALMPTLDFSVKRCDARATGIPIATATQNVLNCYQKLSSEVD FT AFYVTEHRGITSKSVKQLAALLRAARVPSFSMQGSDEVKAGLLMSLAKADYSSVGMFHA FT QTIARIFNGEKPRSISQVWNAPAKIAINLETARRIGFDPPVDILLAADEVYEAEH" FT CDS complement(1742146..1744167) FT /transl_table=11 FT /locus_tag="BB1642" FT /product="putative regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2230" FT /protein_id="CAE32139.1" FT /translation="MFMRRTPRLELPLSLRGKFLLLIASTLLLVGIVVMLVTQRDVTNN FT IIKNELHAVSNIMDLVVRDTDTRWSTLLDDKIRTIRESRRQLIQLSAVVISVLNAYAAQ FT AERGHVTTGAAKGMARVWLNHLDLGPRRVAFAYDAEGTVLASTNPRMIDRDLSGIRDFK FT GRPLAAAMYEESRNGGRGFAIYPSPLDESAQMRHAYFVYFPAWKWVLAISDSSQAIIDK FT VAAQKASMIAAIDRNLSELRLSRHGFVFVVADDGTVIVPPPPSAARLLDSTDVESGRVL FT HTMLAEISSTRGLTLRFTNGESAWQIDALRYKPLHWTIIGVVPEPDLTDPAQNLVRRQA FT LIFAATLLAGLMLAWVVAVRIARPLAQLSNYARQLPNQDLTEPIRVPPSVACLPRRRRD FT EVGQLAESFLFMNEQLHHNVRALMAQISNRERLESELSIARSIQLGLLPQPLSEAATRG FT SQLRAVMYPAREVGGDFYDYFVLADGRLCFAIGDVSGKGVPAALFMAIVRTLIRSVAEE FT EHDPGAIATKVNHRLAENNPKLMFVTLLIGVFTPETGALAWVNAGHPPPLLIDERGEVR FT LLQGSSGAACGVLDNEAYSTLSTTLPNGTSLVAFTDGVTEAIHGGCAQYGLPRLVALMQ FT GAPRAAAELIEHILHDLREFAADSEQSDDLTIIAIHRP" FT misc_feature complement(1742917..1743153) FT /note="HMMPfam hit to PF00672, DE HAMP domain, score FT 1.1e-06" FT misc_feature complement(join(1743082..1743150,1744057..1744125)) FT /note="2 probable transmembrane helices predicted for FT BB1642 by TMHMM2.0 at aa 15-37 and 340-362" FT misc_feature complement(1744048..1744167) FT /note="Signal peptide predicted for BB1642 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.939) with cleavage site FT probability 0.358 between residues 40 and 41" FT CDS 1744252..1746699 FT /transl_table=11 FT /locus_tag="BB1643" FT /product="putative inner membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2229" FT /protein_id="CAE32140.1" FT /translation="MSTWFDRGKGALRKLNSRPLLGVTLACVALLWLAQGLTGLLTLSA FT LQRQIVDATAARVEASARQSAIVIENGVRLGKPLEQYFGLRDLLDGLLEESHGVTGVAV FT VLKDGRLVASAGVLVPHAARLARALAFPDDEPDVQRQPSGSVRLVGDEAVSLGIPLAGS FT DGIVRAALVLGWPRDPAFMHALMWRNLQALALVTAAVALALALALALVLRRGERRRRER FT GGARARFVLPLVALLLAQGVYAGYTIDMFRDVWLDVVRHNAVVLATGLQRGLDRVLGYG FT LELHQLRGVDRLFSRTIHAYPLIGSIALVASDGRVLQEVDARGSVTGDAQRRFADDPGY FT TVSLPLGGPDASRGALALRLDGGAVAAALRDRALDAATVAVVALVVAVELLLLLAVVMN FT RALPNGQGRQPSADGTDVGGLTRPVMFGYLFACAMPASFLPLFARSLPAANLPLPPGLL FT IALPISLEMGCGLLAALMAGRLSERKGWRHAVLQGLLLSCIGFVASALAPNLAWFVSAR FT GVVGLGYGLTWMGLQALVVSRSPPTHRGRSMAGVVAGLFAGQLSGVAVGAMLMEQLGFR FT AVFAIGAVLLLLPLAGVASLLRACALPPAMAASTSAPQGRRAPLGPLLHGRGFGMLLLT FT SVIPFSIAQVGVMSFALPLYLEAEGAAPASIGRIFMIYGVCVVYLGPLVARWVDWSGVR FT WPWIVLAGALGTAGLLVFRLLPDGLLAAGVALSLLALAGCFAGASQMPYMLELRAVREH FT GAAGAASVMRAADKLGQMLGPLLIGALSGPLGMGAAMAALGMMYLGATLWFVLACPWRQ FT GGG" FT misc_feature 1744252..1744359 FT /note="Signal peptide predicted for BB1643 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.827) with cleavage site FT probability 0.376 between residues 36 and 37" FT misc_feature join(1744309..1744377,1744819..1744887,1744936..1744995, FT 1745377..1745445,1745521..1745580,1745623..1745691, FT 1745728..1745796,1745893..1745961,1745980..1746048, FT 1746145..1746213,1746247..1746315,1746328..1746387, FT 1746406..1746474,1746601..1746669) FT /note="14 probable transmembrane helices predicted for FT BB1643 by TMHMM2.0 at aa 20-42, 190-212, 229-248, 376-398, FT 424-443, 458-480, 493-515, 548-570, 577-599, 632-654, FT 666-688, 693-712, 719-741 and 784-806" FT misc_feature 1745494..1746693 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.0023" FT CDS complement(1746696..1747859) FT /transl_table=11 FT /gene="alr" FT /gene_synonym="dadB" FT /locus_tag="BB1644" FT /product="alanine racemase, catabolic" FT /EC_number="5.1.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2228" FT /protein_id="CAE32141.1" FT /translation="MPLASDPFDAPIPGLHACIDPIAVAHNLEVLRQRLGVGVDGPRIW FT ATVKADAYGHGLHNVLPGLRAADGIAVRHLHEAHQCRRVGWRGPIMVYAGLTHEREAAL FT LTLQQLHLVITDMTQLEWLPGKPLYACAPWIWLRYIGATRLGGLDAGEYRRAYARCREL FT QQHGALRGVGHLNHYANAASVGDLEREHADFEACIRGLPGPVSTCNSAASCVMPTMAAR FT TDWVRPGLALYGVSPIPGRVGRDLGLRPAMTLRSTLCATQNLPAGASVGYGCAFVADQP FT MALGLVRCGYGDGYPHNPRASFPVQVDGVLTRTVGRISMDLMAVDLRPIPAAARGAPVV FT LWGSPQLPVEHIAHAADTIAAELLTGLTARVPLMRADHAALLRGPLA" FT misc_feature complement(1746732..1747733) FT /note="HMMPfam hit to PF00842, DE Alanine racemase, score FT 1.9e-51" FT CDS complement(1747943..1748371) FT /transl_table=11 FT /locus_tag="BB1645" FT /product="putative anti-sigma factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2227" FT /protein_id="CAE32142.1" FT /translation="MSSKTDTLELSVTATTATDALYWLEHIALRDRWSARLRFTLTLCA FT DEALNNIVSHAFTPGHPAAIHLTLRQTRREVSLHIADNGAAYDPTQALSPPLARSLDDA FT QPGGHGLRLMRHFMHALSYQRRDGWNHLTLTSHSAPES" FT misc_feature complement(1747955..1748266) FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 0.15" FT CDS 1748515..1748865 FT /transl_table=11 FT /locus_tag="BB1646" FT /product="putative anti-sigma factor antagonist" FT /note="ortholog of Bordetella pertussis (BX470248) BP2226" FT /protein_id="CAE32143.1" FT /translation="MKLTMDKIDGMLIACLQGVVNSANAEQLEAELAAQVDKGERRVVL FT DLGRLDYISSAGLRVVLLVAKQLRQVQGELVLCELKPHVREVFEISGFLSIFPVANSRE FT AAAAAFKTALPR" FT misc_feature 1748515..1748589 FT /note="Signal peptide predicted for BB1646 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.792) with cleavage site FT probability 0.738 between residues 25 and 26" FT misc_feature 1748518..1748832 FT /note="HMMPfam hit to PF01740, DE STAS domain, score 5e-21" FT CDS complement(1748862..1750406) FT /transl_table=11 FT /locus_tag="BB1647" FT /product="putative phospholipase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2225" FT /protein_id="CAE32144.1" FT /translation="MLLSLRIRTHIPDPPLAAPAATQAFLPDAMDPLEQLLRDYWPHIV FT FAISVVAGTGAAVHAAMTKQDVRAAIAWVGVALFSPLFGALLYFVAGINRIRRSLVSQQ FT HDDAMLAYTGHPDAQVEDVVPCSGPQFASLRVLGDQVSRFRLLGGNQVRPLAGGDEAYP FT AMMQAIREARVSIAMQSYIFDCDPIGREMAQALVEAQQRGVQVRVLIDAIGSKYSRPPI FT IRTLVRGGVRTARFMTNPLGVMRMPYANLRSHRKILVVDGHVGFTGGMNIRAAFVTALA FT GKAANGDTHFRLEGPVVAQLMAVFAHDWNFTTRESLEGPTWFPPAPERAPGSVPMRCVA FT SGPDSALGSTHKMLLGALAVAQRHVRIQSPYFLPDQTLIGALGTAARRGIRVDIVIPGS FT NNLRLVNYAMSAQLDQVIRTGCRVWRSAGAFDHSKLLTVDDAWSYVGSSNMDPRSLRLN FT FELDTEIYDRELAGWIGQRIDAQIRHARQETLQALNAQPFIKRLRNKVIWLATPYL" FT misc_feature complement(1749045..1749128) FT /note="HMMPfam hit to PF00614, DE Phospholipase D. Active FT site motif, score 7.6e-05" FT misc_feature complement(1749462..1749536) FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT misc_feature complement(1749579..1749662) FT /note="HMMPfam hit to PF00614, DE Phospholipase D. Active FT site motif, score 0.13" FT misc_feature complement(join(1750134..1750202,1750221..1750289)) FT /note="2 probable transmembrane helices predicted for FT BB1647 by TMHMM2.0 at aa 40-62 and 69-91" FT tRNA 1750478..1750553 FT /note="tRNA His anticodon GTG, Cove score 82.63" FT CDS complement(1750724..1751191) FT /transl_table=11 FT /locus_tag="BB1648" FT /product="putative acetyltransferase" FT /note="Similar to Salmonella typhi putative FT acetyltransferase YjaB or sty4399 SWALL:Q8Z1W2 FT (EMBL:AL627282) (145 aa) fasta scores: E(): 1.3e-30, 56.73% FT id in 141 aa, and to Escherichia coli hypothetical FT acetyltransferase YjaB or b4012 SWALL:YJAB_ECOLI FT (SWALL:P09163) (147 aa) fasta scores: E(): 6.1e-29, 54.67% FT id in 139 aa" FT /protein_id="CAE32145.1" FT /translation="MTSIRASRPADGARTVEIWRAAVDATHDFLTPQDRLAIDEMVCGF FT LPLAPLWLAVDDNDYPMAFMLIEDGHMQALFVDPAARGRGIGTALVRHGAMLYPRMTTD FT VNEQNAQAIGFYEKLGFQRTGRSPLDDQGKPYPLIHLELSQARPPLPGSFI" FT misc_feature complement(1750826..1751035) FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 1.4e-14" FT CDS 1751345..1754056 FT /transl_table=11 FT /gene="bapA" FT /locus_tag="BB1649" FT /product="autotransporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP2224" FT /protein_id="CAE32146.1" FT /translation="MVGRSCHRAGWLYRATFLLYAANCAYPANAQSVSGFGQVSNGPIQ FT SPHWVVGGELIVGDTGAGTLLIEAGGTVLNDWAYIGSDNGAVGTLTVSGHDGAGAASTW FT TTVEDVSIGVASGSRGTLEVLGGAMAQSGWGTIGVAAGSVGSVTVSGTGSVWNIATVNS FT FQIGSSGSGTLWIDQGGAVYSGQGVIGWNPGSDGHVTVLGPATVWNPLNNIYVGLGGTG FT ELAIRDGAAVATAGSSSPGAAASIYIGTSAGSAGTVTVSSATADTSTLTSTDRIEIGSG FT GAGVLTVAKGGMVGVASDAWIAITGTSSGTLNLTGDASGRGVLETGSVIKGVGNATFNL FT DGGVLRANRDEANFLNGFSTQAVGSGGAWFDTNAHDVGVVTAFSGTSSFNKLGAGTLTL FT SGNSAAFTGNTDIQAGTLQVDGILGGPVDVLGGARLTGTGRVGATANKGTIAPGPRSGF FT GTLTIAGDYAAQGGNLEIRTQLGADDSPTDRLVITGASAGVTPVTVENIGGTGASTQRG FT IQVVQVNGASAGRFNLANGDYVIEGHPALVAGAYGYVLQQDAADGDWYLRSSLPDPGAP FT QGGDGLPGAGEPVLYQPGVPVYEAYANTLLHLSRLSTLRQRVGNRLYDSADVGRNGVWS FT RVEGSASQLDPSASTTGERQDVDSWKVQFGVDRILAGGQEGSRLVGGLALQYGKADTRV FT SSIYGNGTVDTTAYGLTPTLTWYGRDGAYVDAQAQAIWFDSDLSSRLAGKLKDGRKAHG FT YGLGIEAGKAFGLREGLALIPQAQLSYASTRFDSFNDRFGARVEDDKGDSLQGRLGIAL FT DYKSSWQASGANRESSVFGIVNVKHEFLDGTRVRVAGVPVSSRMARTWGSVGVGADYGW FT GERYAIYGQVDADADFAGSYILTATAGFRMMF" FT misc_feature 1751654..1751680 FT /note="PS00037 Myb DNA-binding domain repeat signature 1." FT misc_feature 1752632..1753048 FT /note="HMMPfam hit to PF03212, DE Pertactin, score 0.0021" FT misc_feature 1753184..1754050 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03797, DE Autotransporter FT beta-domain, score 3.2e-54" FT CDS 1754319..1754591 FT /transl_table=11 FT /locus_tag="BB1650" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2222" FT /protein_id="CAE32147.1" FT /translation="MYQNNLIYKGYRLTAKVARHTVEVNEAAPSGPLFQATVSVVQADS FT IQDTGDEYPVPYFADGGFVYSPREAVHQAISHGREIVDALIGLPA" FT CDS complement(1754661..1755425) FT /transl_table=11 FT /locus_tag="BB1651" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1553" FT /protein_id="CAE32148.1" FT /translation="MSNFLEASGWSVQPAGEHAIRAISPMTLGLDGQHAAFFIVHPDAH FT TFYLTDACETALHAATFGIELVAKRLEVLNQTPGVSLARFDKAGAIVAQGPNEQLQDAL FT WDAVKLAMALSFQCAKWMPKFSRLRFRAQVGRTLAEAVGANRMVKGAKAQGSSGHTADF FT AFAVRSATSTSMTYIEPIALKAGRKVDWTQVYQTHGKMSDVKMADARNARLVILEDGAT FT AEEFKKAVAILEQSAAVRTLAKTRDWQEVFAT" FT CDS complement(1755422..1756021) FT /transl_table=11 FT /locus_tag="BB1652" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1554" FT /protein_id="CAE32149.1" FT /translation="MPLLARAMHGRRRIFEFNRVPMANNVEPLITPDEVQEILAEPKET FT TKPISWAHKPAASNSQWQEFSCACRLKGDVREDILFRITYRGARTAVFGQATIFLPEAF FT GASLFVGPHRVFGVDTDDSFHTSMVGENLPQFRKALADRSHQHIWVEAGEGYAEPVVPA FT LESIGALVDYFLPRANLTLTGGFAHPLKGRQIELIL" FT CDS complement(1756126..1756971) FT /transl_table=11 FT /locus_tag="BB1653" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1555" FT /protein_id="CAE32150.1" FT /translation="MDDSRESQNIEDRRAAGPRLGGKGRIGIGTIVLALVAMYFGIDPS FT VVLQMAEGPATYEQAPAGAPPANDPQARFVAKVLGETEDTWGAIFTQSLNRNYVPPKLV FT LFRGATPTACGTGQAAMGPFYCPGDSKVYIDLGFFDEMERRLNAPGDFAQAYVIAHEVG FT HHVQHLLGVSEQVDRLRQRNPAQANALSVRMELQADCFAGLWARRADQARNILESGDIE FT EGLNAASAIGDDTLQKKSQGYVVPDAFTHGSSAQRVRWFKRGLESGDLRQCDTFGAAQL FT " FT misc_feature complement(1756474..1756503) FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT misc_feature complement(1756846..1756914) FT /note="1 probable transmembrane helix predicted for BB1653 FT by TMHMM2.0 at aa 20-42" FT CDS 1757039..1757665 FT /transl_table=11 FT /locus_tag="BB1654" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1556" FT /protein_id="CAE32151.1" FT /translation="MALLLTLHPANPQPRLIKQAAQWLSDGGLVAVPTDSSYAVVAPLD FT DKAAADALRRLRGLDERHHLTLLCRDLAEIGQFARVDNKQYRLLKAATPGPWTFILEAT FT REVPRRVSHPSRKTIGIRVPAHAVALALLEQVGAPLLSTTLIPRDEEDALNDPEAIQER FT YQHELAAVIDAGACPQTPTTVVDLTGAEPAVLRRGGGDPAALGLD" FT misc_feature 1757102..1757632 FT /note="HMMPfam hit to PF01300, DE yrdC domain, score FT 1.1e-41" FT CDS 1757698..1758369 FT /transl_table=11 FT /locus_tag="BB1655" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1571" FT /protein_id="CAE32152.1" FT /translation="MRALQCVAMNEIIQLIAIYAIPVIFAITLHEAAHGYVARMFGDPT FT AYQAGRISLNPMRHIDPVGTLLVPAAILLASKLMGGAGLLFGWAKPVPVDFGRLRRPKK FT DMLWVALAGPAANLLMAILWALAIRLYFEAGVQEGYWFEMARAGVNVNLVLMALNLLPI FT LPLDGGRVVFSLLPQRLAFQYARIEPYGLVIVLLLLVTDALWVLMRPVLGLGAEIVSWF FT L" FT misc_feature join(1757731..1757799,1757890..1757958,1758016..1758084, FT 1758127..1758195,1758256..1758324) FT /note="5 probable transmembrane helices predicted for FT BB1655 by TMHMM2.0 at aa 12-34, 65-87, 107-129, 144-166 and FT 187-209" FT CDS 1758455..1759360 FT /transl_table=11 FT /gene="dapA" FT /locus_tag="BB1656" FT /product="dihydrodipicolinate synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1570" FT /protein_id="CAE32153.1" FT /translation="MASSAPAATVQFQGSLVALVTPMQPDGGLDYDAYRSLIDWHVAEG FT TDGLVVVGTTGESPSVSMEEHAELIRVAVEHAAGRIPVIAGVGANSTDEAIHLARHAKA FT VGAQAGLSVVPYYNKPNQEGIYRHFRAVAEAVDLPTVLYNVPGRTVADMSNDTVLRLAE FT VPGIIGIKEATGDIARGALLLREAPAGFQVFSGDDPTAAALILLGARGNISVTANVAPR FT LMHELCTAARGGDVPRTRELNARLARLNKALFIEANPIPVKWALAQMGHTALGYRLPMV FT ELSEQYHSLVRTALQEVGLL" FT misc_feature 1758485..1759351 FT /note="HMMPfam hit to PF00701, DE Dihydrodipicolinate FT synthetase family, score 3.2e-133" FT misc_feature 1758596..1758649 FT /note="PS00665 Dihydrodipicolinate synthetase signature 1." FT misc_feature 1758881..1758973 FT /note="PS00666 Dihydrodipicolinate synthetase signature 2." FT CDS 1759372..1760499 FT /transl_table=11 FT /locus_tag="BB1657" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1569" FT /protein_id="CAE32154.1" FT /translation="MRMNKRHAGASALMALALLAGCSDVNQLLGNEESVDYKSTRRGDP FT LSIPPDLTQANNDPRYKAPASGTATYSQFQQQGLQQQASAGQNTNVLPERADMRVERDG FT DLRWLVIERPPEQLFPKVVDFWTDTGFTVSVNNPQAGIIETDWAENRAKIPESWLRQVL FT GSVLETAWDSGEREKFRTRVERVNGHTEIYITHNQMLEKRVGSDGGQVQWTHGKEDPGL FT NAAMLARLMVYLGTDVDAARKLVAQAEAAPQAPKVQSVRAEGAMLVVDESFDRAWRRVG FT VALDSGGFAVDDRDRSAGEYFVRYVDTDTGAQNEQPGFFSRLFSSDKKAQAPQYRIRLT FT GSGTQTQVTVLDANGQRDSSATAQRMLSVLKDKMV" FT misc_feature 1759372..1759461 FT /note="Signal peptide predicted for BB1657 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.416 between residues 30 and 31" FT misc_feature 1759405..1759437 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(1760587..1761213) FT /transl_table=11 FT /gene="fim3" FT /locus_tag="BB1658" FT /product="serotype 3 fimbrial subunit precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1568" FT /protein_id="CAE32155.1" FT /translation="MSKFSYPALRTALILAASPVLPALANDGTIVITGSISDQTCVIEE FT PSAPNHIKVVQLPKISKNALRNDGDTAGATPFDIRLKECPQALGALKLYFEPGITTNYD FT TGDLIAYKQAYNASGNGNLSTVSSATKAKGVEFRLANLNGQHIRMGTDETTQAAQTFTG FT TDVTNGGNTTKSYTLRYLASYVKKPNEDVDAAQITSYVGFSVVYP" FT misc_feature complement(1760593..1761132) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00419, DE Fimbrial protein, score FT 6.1e-12" FT misc_feature complement(1761139..1761213) FT /note="Signal peptide predicted for BB1658 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 35 and 36" FT CDS complement(1761942..1763129) FT /transl_table=11 FT /locus_tag="BB1659" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1567" FT /protein_id="CAE32156.1" FT /translation="MNPATALALLGGLAPADFMRRYWQRKPLLIRQAIPGFKPPVSIAA FT LRQMARRDDVEARLIWREQGQWNMENGPFARLPKAGEPDWTLLVQSVDLHHDAVSALLQ FT QFRFIPDARLDDIMISVAGDGGGVGPHFDSYDVFLLQASGRRRWRYGRQKDLSLQPDLP FT LKILSRFEPEEEHVLEPGDMLYLPPQAAHDGVAEGGDCMTISIGFRAPSQAMLARGLLE FT AAADQVMARVGLLGGPYGEPPLPGARLDGLYRDPGQPAVAHPAAVPDGLVEATLATLDR FT LRFDEALAARFLGCWLTEPSQLSVFDTGGDQVDLEDSWPASGALVLDRRSRMLYRGRQL FT FINGEAASVAAEPALRHLADARALACDDPRCARLSDEARSCLADWLDAGWLRYQP" FT CDS complement(1763126..1765723) FT /transl_table=11 FT /gene="mutS" FT /locus_tag="BB1660" FT /product="mismatch repair protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1566" FT /protein_id="CAE32157.1" FT /translation="MMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERAARLLNLTLTK FT RGNSNGTPIPMAGIPVHAMEQYLARLVALGESVAICEQIGDPAAAKGPVERRIVRIVTP FT GTLTDEALLPAKADRALAAVCVTGKREPRAGLAWLNLASGAFHVTECAPGQLESELHRI FT APAELIQAESAELHMAFEGARTRVPDWHFEADGARAQLLAHFKTDSLGGFDVEDMPAAV FT CAAGALLRYAARTQSQALAHVQTIAAERPGQYVLLDPVTRRNLELTQTLSGEESPTLFS FT LLDGCRTPMGSRLLRRWLHHPLRENEPVLARQHAIATMLTARQEGEQAFAAAALLETLR FT DALNAFPDIERIAARVALRSVRPRELASLRDALVALPALHASLAPLSGSPRARELAAQL FT AMPPDIGELLARAVASEPAVAIRDGGVIAAGFDSELDELRALATDGGDFLVQLEARERE FT RTGIGNLRVEFNRVHGFYIEVSKGQTDKVPEDYRRRQTLKNAERYITPELKTWEDRVLS FT AQDRSLAREKWLYEQLLDALAQYVRPLSQCASALAELDTLAALAEHARRHDWVAPELID FT GAEIDIEAGRHPVVERAIERFTPNGCRLDQTRRMLLITGPNMGGKSTYMRQVALIALLA FT RTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAASTPASLVLMD FT EIGRGTSTYDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAEQPTAANVHLAAAES FT AGGIVFLHEVREGPASRSYGIQVAQRAGVPAAVIRQASRELERLEAQGAPTPQLGLFAA FT ALDADVQSQAMTEQAEDAAALAQLRDQLAAIDPDSLTPREALDALYRLKQHLT" FT misc_feature complement(1763354..1764073) FT /note="HMMPfam hit to PF00488, DE DNA mismatch repair FT proteins, mutS family, score 3e-128" FT misc_feature complement(1763609..1763659) FT /note="PS00486 DNA mismatch repair proteins mutS family FT signature." FT misc_feature complement(1763858..1763881) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1764299..1765723) FT /note="HMMPfam hit to PF01624, DE MutS family, N-terminal FT putative DNA binding domain, score 1.4e-161" FT CDS complement(1765780..1766739) FT /transl_table=11 FT /locus_tag="BB1661" FT /product="integrase" FT /note="Similar to Bacteriophage HK022 integrase FT SWALL:AAF30377 (EMBL:AF069308) (357 aa) fasta scores: E(): FT 6.6e-11, 29.88% id in 338 aa, and to Escherichia coli FT O157:H7 putative integrase for cryptic prophage cp-933m FT z1323 or ecs1055 SWALL:Q8XD80 (EMBL:AE005287) (339 aa) FT fasta scores: E(): 3.1e-19, 29.32% id in 324 aa" FT /protein_id="CAE32158.1" FT /translation="MPPCVYEKHGAYYYVKGGKWTRLAADLPTALAEYARRFDNPRGGM FT ADLVEKVLTQVSPKLSPNTIQQYKIAAARIKDAFAEFAPDQVRPKHVAALKVDMADTPN FT MANRVLSFLKTVFVYAVEWQLVDSNPCIGIKRHNEGKRKRYITDAEYAAIYHHANPRMQ FT VIMDLLYLTGQRVGDVLAIKRSDLTEDGIVFEQEKTGAKLLVRWVPELRDAVVRANALN FT GNVLAPTLFRTRSHGKGAPSYGTTRDRWREAVEAAGVQDANIHDIRAKSLTDAKRQGKD FT AQLLAGHASPAMTDRYIRLRETLIVDGPTFNRQAMKSA" FT misc_feature 1765783..1805209 FT /note="Prophage" FT misc_feature complement(1765819..1766304) FT /note="HMMPfam hit to PF00589, DE Phage integrase family, FT score 1.4e-05" FT CDS complement(1766747..1766959) FT /transl_table=11 FT /locus_tag="BB1662" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32159.1" FT /translation="MLTLTAAEIKEITRKQRRTAQVKVLKALGIRYQVRPDGTILVYRR FT YVEKADTIPTREPQMRLRNGQTAQV" FT CDS complement(1767116..1767763) FT /transl_table=11 FT /locus_tag="BB1663" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa phage-related protein FT xf0485 SWALL:Q9PG17 (EMBL:AE003898) (181 aa) fasta scores: FT E(): 6.5e-16, 36.4% id in 206 aa, and to Sinorhizobium FT meliloti phage PBC5 hypothetical 28.0 kDa protein orf72 FT SWALL:Q8W6F5 (EMBL:AF448724) (246 aa) fasta scores: E(): FT 3.7e-14, 35.65% id in 244 aa" FT /protein_id="CAE32160.1" FT /translation="MIERPILFNASMVRALLAGTKTLTRRGKGLEYFSQPENDPDGWQC FT VRVDDGHAFMVYKHMPHERAVKCPYGQPGDRLWVRETWAYAIHAMAAERDEDGPFVYAA FT VGTTQGRLSDHWRPSIHMPRSACRLVLEVTRVRVERLQDISEADAMAEGCSPAWLDAAD FT NTTVHAEAPPTYRQGFARLWREINGDGTWASNPWVWVVEFHALGAPNQEPKP" FT CDS complement(1767760..1767882) FT /transl_table=11 FT /locus_tag="BB1664" FT /product="phage-related putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE32161.1" FT /translation="MPDLPYLALLGIALGAVVALALALHRWLSREIEKEEREER" FT misc_feature complement(1767799..1767867) FT /note="1 probable transmembrane helix predicted for BB1664 FT by TMHMM2.0 at aa 6-28" FT misc_feature complement(1767820..1767882) FT /note="Signal peptide predicted for BB1664 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.974) with cleavage site FT probability 0.924 between residues 21 and 22" FT CDS complement(1767875..1768051) FT /transl_table=11 FT /locus_tag="BB1665" FT /product="phage-related putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE32162.1" FT /translation="MTRYRALRLMGCGWFTAGFIAALNEAFGVPKNEVRFMNVVIAIDD FT AAHPDHKDGGDHA" FT misc_feature complement(1767965..1768033) FT /note="1 probable transmembrane helix predicted for BB1665 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(1767980..1768051) FT /note="Signal peptide predicted for BB1665 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.787) with cleavage site FT probability 0.223 between residues 24 and 25" FT CDS complement(1768048..1769559) FT /transl_table=11 FT /locus_tag="BB1666" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32163.1" FT /translation="MTTPTQAAQPVLTDDEILTVTLYGQSEARMIRNGRAIESALLSKL FT RAPVADERAAFETWNSMHGQYRRSDAYERLDTGDYVKWPVEHGWRVWQARAALANASVA FT DSTLPLEQALYELVDKIDAGLDTGDILQDARRASTALDAIMASAPVALSGVERQAVTGL FT IAVARAAFTFCDDAEDTGVATVNVDRDDIAKLGEALDLLDELPDDQPGYSMGPSNRAEW FT ALRRLLGVASAPVAGEAQPVIHQHGFAADNQRLRAINESLDKQLEEVMAVRDEYHDMAD FT KLANAIADHLLVEIGEHSSSNCPWMRALDAIENAAPQASPVAGTVQSTDRQEALRIAGL FT PNVDAALSNFANDCTQDNAVGLVQAILDAAPQASAEAELRAAYNEWQDKTDFIQEWVQS FT GKLPVKYLGWHRADVMRDLIEQATPAPTAVEGVDDVALPPIPHEWAPIIPSAFAGALLE FT WAKAYARAALSAQPGAIRNPLIAELSGNSGELDCAALSARKEPSK" FT CDS complement(1769556..1769789) FT /transl_table=11 FT /locus_tag="BB1667" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32164.1" FT /translation="MNQLGLFEAAPATPSNPYAFHPNEIGGAILPFIRFCREQLNAQEG FT EISLSLIIDETWKKGRNHPYLKAWDTFNRKAA" FT CDS complement(1769786..1771720) FT /transl_table=11 FT /locus_tag="BB1668" FT /product="modification methylase" FT /EC_number="2.1.1.73" FT /note="Similar to Bacteriophage phi-H cytosine methylase FT dcm5A SWALL:Q38204 (EMBL:X80164) (245 aa) fasta scores: FT E(): 3e-09, 30.7% id in 241 aa, and to Rhizobium loti FT modification methylase mlr8517 SWALL:Q982S6 (EMBL:AP003014) FT (667 aa) fasta scores: E(): 2.4e-41, 40.73% id in 680 aa" FT /protein_id="CAE32165.1" FT /translation="MLTPQLTLGIAAKLVVDIFAGGGGWSTAYEQATGQHVHIAINHNP FT DALSMHEVNHPQAQHYIADVWEVCPREATGGMPVGWLHLSPDCTDHSQAKGGQPRRKNI FT RALAWVTVRWAGTVKPDIISLENVVQILKWGRLIAKRCPRTGRVVTLEEITDEFGRKVN FT RVAEPGERVPVQNQYLIPDPKDVGRHWRRLVAILRGMGYAVEWREMNAADYGAGTTRTR FT LFMMARRDGMPITWPQATHHKKPAKGQKRWRAAADGIDWSVEGKSIFGRKRPLADATMR FT RIARGMKRYVLDIADPFIVPVTHQGADRVHNIREPARTITGANRGELMVATPTLIQTGY FT GERQGQQPRSLDIGQPLGVAVAGGVKHAVASGYLVQAGHGEGKPGARRWSYGCNDPADP FT VGTLTASNGGFSAAVAFMVQANGGYNATPAHDLRRAASTITNTGSQQQLITAHLTTLRQ FT HSIGTAADEPLSTMAAAGQHHGLIAAHLTAMSQNVVGSDVRDPAQTVLAGAARYGLVEY FT DLSPGDEAGALQVAAFLMRYYGEGGQWGDLRDPASTLTTRDRLALVTVHIRGTPYVVVD FT IRLRMLTPAELYDLQGFPKEYIISHGHDGRVFTKTQQVHMVGNSVSPPPAIALIQANAP FT LEFLQRKAA" FT misc_feature complement(1769816..1771678) FT /note="HMMPfam hit to PF00145, DE C-5 cytosine-specific DNA FT methylase, score 4.3e-05" FT misc_feature complement(1770587..1770646) FT /note="PS00389 ATP synthase delta (OSCP) subunit FT signature." FT misc_feature complement(1771550..1771579) FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT CDS complement(1771722..1772207) FT /transl_table=11 FT /locus_tag="BB1669" FT /product="putative methyltransferase" FT /note="Similar to Neisseria gonorrhoeae DNA N-4 cytosine FT methyltransferase m.ngomxv SWALL:Q9AKV2 (EMBL:AJ004687) FT (153 aa) fasta scores: E(): 8.2e-28, 47.68% id in 151 aa, FT and to Salmonella typhi putative methyltransferase sty1026 FT SWALL:Q8Z7X6 (EMBL:AL627268) (157 aa) fasta scores: E(): FT 1.2e-39, 60.25% id in 156 aa" FT /protein_id="CAE32166.1" FT /translation="MEASILDPCCSGRMMWFDRGDQRALFGDIRSEQHTLCDGRAFSIT FT PDLNMDFRAMPFADNSFSLVAFDPPHLRRAGLDSWLRAKYGILGDDWKEDLRRGLAECF FT RVLKPEGVLIFKWAEVQIPVSQILALTDHRPLFGHKSGKREKTHWLTFMKPTFSAKE" FT CDS complement(1772209..1772550) FT /transl_table=11 FT /locus_tag="BB1670" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32167.1" FT /translation="MMDDQTTVWLKSLQYLPPPLRDFHDQKEVFKTIHQITNVDGHEYA FT RSVDWVTGQCYVIDIFLWFMARRGYTLQRCRARVPFRALHADVEEARNRRGAALPLPSA FT AQPTTSAKE" FT CDS complement(1772547..1772774) FT /transl_table=11 FT /locus_tag="BB1671" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32168.1" FT /translation="MSLQYIRDTYGVPAKRGARVQYSGNGIAIQGTITSSRGPHILVRL FT DGDDFSVPFHPTWKMRYLDSAQVQQHKGDE" FT CDS complement(1772771..1773292) FT /transl_table=11 FT /locus_tag="BB1672" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32169.1" FT /translation="MSRSGYNDDGSGDPLSLGRWRGMVASALRGKRGQAFLRELAASLD FT GMPEKRLIAHELKADGQFCTLGVLGAARGIDLAKLDPEDYYQVADAFGIAPCMAQEVVY FT ENDEAFAEFEWVYVEICGPVRPHYPEYGRHRATVRVAHDDPPAMRWRHMRAWVQEQIDR FT AAQQGKGGEV" FT CDS complement(1773289..1773933) FT /transl_table=11 FT /locus_tag="BB1673" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32170.1" FT /translation="MTAPTPRKPLVVGWLYEGIVPPVFTDSVVIYREWLRQGHANISPV FT IRKSDADAYYIPDGEVRVECAPDQRGIGIGAWVGSRCIYSGGHEIPAGANAPAADDTPP FT RFTISASDRFELTGAVGLLRGYDCAGAADALQRVLDAESASFSVQGEDDARDAGRYRTV FT RKVAADQENGYALMAEASREVGIEVGQYPTPEQFDAVVDLVAAQQGKGGEA" FT CDS complement(1773930..1774754) FT /transl_table=11 FT /locus_tag="BB1674" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage phiE125 Gp58 58 FT SWALL:Q8W6P2 (EMBL:AF447491) (273 aa) fasta scores: E(): FT 1.9e-39, 49.43% id in 267 aa, and to Chlamydia muridarum FT probable chromosome partitioning protein ParB or tc0060 FT SWALL:PARB_CHLMU (SWALL:Q9PLN9) (280 aa) fasta scores: E(): FT 0.00047, 25.68% id in 218 aa" FT /protein_id="CAE32171.1" FT /translation="MAKNSVDAYGASGKTNVLFFQPDALVLVSDPNSPLYDERVHLPVD FT ERLARNIDYQGVLEPVAVSKNPETGAVEVVFGRQRVKAAMLANEWREARGEPPRQVPGV FT VYQGKRQNALDAIASENEARTADTPLGRAEKMRRHMALGRGEDQIAVIYNCTITTVRDT FT LALLDSPKAVQDAVEGGQITLTHAKALAKLEPDQQRAKVAELVAAGKDAKPHERSRRQA FT AVMGERPRVKSRKQILAALQDASGDYAAALRWVLGEANADAQPVPQSQQEPA" FT misc_feature complement(1774710..1774733) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1774775..1775146) FT /transl_table=11 FT /locus_tag="BB1675" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32172.1" FT /translation="MTAFCVFGMTEPIARAAARKAWGKHVAAMTKEARACLTESDETDW FT IDVKTDYLLAKAKPVQVSGAFDAPQFARDYIALAKRNHRTSRLQVMARGEKRDASGAPR FT ISKATKKPIIGWIPFNFLS" FT CDS complement(1775157..1775393) FT /transl_table=11 FT /locus_tag="BB1676" FT /product="phage-related putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE32173.1" FT /translation="MRTMTAPRPAARGPAPANKAQSTASKLADLIAPRDLAGKGNWSND FT ADIPLWAWPASLALAAVFLFGPQMLAWLLRAIL" FT misc_feature complement(1775172..1775240) FT /note="1 probable transmembrane helix predicted for BB1676 FT by TMHMM2.0 at aa 52-74" FT CDS 1775766..1776062 FT /transl_table=11 FT /locus_tag="BB1677" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32174.1" FT /translation="MFYKSGQSTPLSEDDLNHCKLVSLWANGTMSLRQEGFSMAELMDL FT SIQEADPDLRRIRQNNIQLAYDQLQYHTRAEKERAVLEFENATYRACLKGLKR" FT CDS complement(1776367..1777050) FT /transl_table=11 FT /locus_tag="BB1678" FT /product="putative phage repressor" FT /note="Similar to Bacteriophage HK97 prophage repressor CI FT SWALL:Q9MCQ2 (EMBL:AF069529) (237 aa) fasta scores: E(): FT 6e-08, 28.88% id in 225 aa, and to Bacteriophage P27 FT putative lambda repressor SWALL:Q8W648 (EMBL:AJ298298) (218 FT aa) fasta scores: E(): 4.7e-10, 32.9% id in 231 aa" FT /protein_id="CAE32175.1" FT /translation="MSTLQERLRDALADAQISQSELARRVKVSRGAISLWLTGATKELT FT ADNLLAAAQALGVNPVWLGSGKGPKRSGEVAEQPYFDNNVAPAAAGSRRVPLINYVQAG FT ELTEIGAAFSGEAVEYLLTDMNLSQHAFALEITGLSMYPDFKPGDRIIVDQEICPQPGD FT FVVARNGGYEATFKKYRPRGLDANGNDVFELVPLNDDYPTLYSDRELLTIIGTMMEHRR FT YYRRG" FT misc_feature complement(1776421..1776771) FT /note="HMMPfam hit to PF00717, DE Peptidase family S24, FT score 2.2e-09" FT misc_feature complement(1776862..1777029) FT /note="HMMPfam hit to PF01381, DE Helix-turn-helix, score FT 4.6e-09" FT misc_feature complement(1776937..1777002) FT /note="Predicted helix-turn-helix motif with score FT 2114.000, SD 6.39 at aa 52-73, sequence FT ISQSELARRVKVSRGAISLWLT" FT CDS 1777452..1777982 FT /transl_table=11 FT /locus_tag="BB1679" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc1675 rsc1675 or rs04063 SWALL:Q8XYT3 FT (EMBL:AL646065) (167 aa) fasta scores: E(): 0.009, 28.96% FT id in 145 aa" FT /protein_id="CAE32176.1" FT /translation="MTCRYTQIDPHDALYNAVRRTPGGVEDLAAFLTARRGAAIHPETL FT RQRLRQVKGQSMSLPLAELATEWMLEKAGGDEYARDWIIALAIRHGVAASVLPPPLQHD FT DEVRAARDKVMEMSALNGLLSAVAIEALSDGEISEQDASAIVAECDKIIQKAQRLKRNV FT VRGAGVPSTESYQ" FT CDS 1777979..1778284 FT /transl_table=11 FT /locus_tag="BB1680" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32177.1" FT /translation="MMVRGASGNVVRARVAPGAGKGGGLARLAGMLCQQALFQRWVSVV FT AGPAPQGVSAQDHAAEFVRLRCRVDTRAQLDHDARAAWRFHQWVRRPYRMWAEYHG" FT CDS 1778277..1778579 FT /transl_table=11 FT /locus_tag="BB1681" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32178.1" FT /translation="MAENTTPVTRLRLLVQGYELPAEACVRAMQLIASQRRFFTDAHIG FT DQIEGDMVPVKPWRGATARGAAWVAAETLIWEAWRRKEVRQVPTRRARQLWQVIR" FT CDS 1778576..1779070 FT /transl_table=11 FT /locus_tag="BB1682" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32179.1" FT /translation="MMRRTPLTRKAPMKRGEALRSAVPMMRATPMPPPRAAMKARKRGK FT KPPKTIYRNPALLALAEGENCLLRVPKYCQGGTDSTVACHSNRLRDGKGKGIKAHDWAI FT AFGCSGCHWFIDESKAPLELKLSYFIPGMRLTRLRIIAMGKWPEEAERGYQLLYGGGDA FT L" FT CDS 1779067..1780023 FT /transl_table=11 FT /locus_tag="BB1683" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32180.1" FT /translation="MSTIVMSACWPIQTKTPVQKAVLMSMADNANDEGVCWPSVAYIVM FT RTCAGERTVQDAIKWLIKHGAITASGRSGRSTVYTVTPAKFAPPQDLHPRSIRTPANSA FT PPQDSHPTPAAAAPPPPQDSHPTPANAAPITVIEPKEEPSRNRQGGAGAPGVPENPQAF FT SPKAGGTSKPLDTVGVKDLVEEGVNRQHAQDWLRVRRDKKQPLTRTAWQLVQSEAEKAG FT VSVAEAVRVSAENSWAGFRASWMEKAKEGVPAADGKAPDSLDWLRSWSGILAKGNELGL FT KQQQGETSPAFKARVLGAADLSEEQKARVRADFGVTI" FT CDS 1780265..1780744 FT /transl_table=11 FT /locus_tag="BB1684" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32181.1" FT /translation="MIPQPRIKPVGGRQWECACQFVRRRGSSQKQAYDRWLVASIRHAM FT APAKVPAEPKRKKAVKSEKRKTKVTQDVPGVLVHRIEDQPASSDSHAGQGSIPVKPARP FT KPAPYIGVAAGPRNFVKTGQYTMSPEMRLAHARAAAAQGAMHAMAPSRPDQRGLR" FT CDS 1780741..1781109 FT /transl_table=11 FT /locus_tag="BB1685" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32182.1" FT /translation="MTGTTRKRPRAPSPLEERFARDLRAVRVAVPEREYLFAAPRRWRF FT DFAWPHARVAVEIEGGVWTEGRHTRGAGFVADTEKYNAAAIAGWRVLRFTEKAVRDGTA FT IATIEQLLGAPPYNPGII" FT CDS 1781109..1781606 FT /transl_table=11 FT /locus_tag="BB1686" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf76 orf76 SWALL:Q9MC52 FT (EMBL:AF165214) (169 aa) fasta scores: E(): 1.6e-09, 28.65% FT id in 171 aa" FT /protein_id="CAE32183.1" FT /translation="MTPERMQALLAGQTSVAKKVFAALPSSLSTAFTPVDIAREMKAMA FT GASVDIHTMRGCLACLQKAGLVKEVVPGSFRRVEVKEKHTVTMTKIAAQAGPKLAATQG FT AQPPMDMLASIAAKVRVAMAGLGALADEIDNAALAIEERSAASEKEVAKVKQIATLLKE FT LG" FT CDS 1781607..1782290 FT /transl_table=11 FT /locus_tag="BB1687" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32184.1" FT /translation="MVTMTISRLASTPVGQAKQGPMFKSAHEALTFALHYSMQQYDRPL FT MNRLASGELTAGMARQGGKGLSGLDGAGQAGMIRAELAQLEPIHQAVLVASIAPADIPC FT HCRVSCCSGRKVNPEWQDAMSVLTTAAAAGALSGCVSNGRLRSALIQRLFGAKVTLVAL FT ADQFRVDENTVGAHHAKLKRWLFGGADRSEKGEQPGLHPQAYQAFTERLRICNWLAGDA FT DAKKI" FT tRNA 1782469..1782543 FT /note="tRNA Met anticodon CAT, Cove score 89.16" FT CDS complement(1782547..1782825) FT /transl_table=11 FT /locus_tag="BB1688" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1563 SWALL:Q9PD17 (EMBL:AE003986) (112 aa) fasta scores: FT E(): 3.9e-07, 50% id in 108 aa, and to Neisseria FT meningitidis hypothetical protein Nma1326 SWALL:Q9JUG2 FT (EMBL:AL162755) (100 aa) fasta scores: E(): 2.8e-05, 40.69% FT id in 86 aa" FT /protein_id="CAE32185.1" FT /translation="MPKLKPGTVVPTREEDEAINRGIAADPDTYELGAADLKQMKRIGR FT PKAEVTKERITIRLSPDVLERFRATGTGWQTRVDAALRDWLKTHQPG" FT CDS complement(1782812..1783078) FT /transl_table=11 FT /locus_tag="BB1689" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1562 SWALL:Q9PD18 (EMBL:AE003986) (88 aa) fasta scores: FT E(): 6.7e-16, 56.81% id in 88 aa, and to Synechocystis sp. FT hypothetical protein Sll1965 SWALL:P73378 (EMBL:D90905) FT (136 aa) fasta scores: E(): 1.5e-05, 38.37% id in 86 aa" FT /protein_id="CAE32186.1" FT /translation="MDITFDPAKDLSNQRKHGVSLAEAEGFEWDDALVREDMRREYGER FT RMIALGYIDVRLYCVVYVDRNNERRIISLRKANSREVNLYAQT" FT CDS 1783437..1784057 FT /transl_table=11 FT /locus_tag="BB1690" FT /product="phage-related putative endonuclease" FT /note="no significant database matches" FT /protein_id="CAE32187.1" FT /translation="MCQCDDCKTKLMPLVAHEVDHIDNRRDVAGDLDDSPDNLRAVNRD FT CHRRITMRQIAEAGAVGTMAPVWMPITQKPLTVVVGPPSAGKSTWVKAAAKASDLVIDL FT DILAPTVIGKPMWIADSRERSLVIRERNSLVAEYMRGKTAHPHCFLIDTAGSFKRRKFW FT LDRGADVVLLDTDKDICRARIRQCSARPESTRAGRLAAVDRWE" FT misc_feature 1783440..1783598 FT /note="HMMPfam hit to PF01844, DE HNH endonuclease, score FT 0.0052" FT misc_feature 1783677..1783700 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1783842..1783865 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1784163..1784582 FT /transl_table=11 FT /locus_tag="BB1691" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32188.1" FT /translation="MANPRKPTVLKVVAGTDRPDRKGGDLVDLPLVPEIPAAPDWMPNR FT HAEAEWNRLAQILHANRLLTEAGLGPLGMLCALHGKLVQLWMAGETPTGHMLAQYRALV FT SEFGLTPVAQGKVKGSAPAEQAGNRFNSNGKRRSA" FT CDS 1784560..1786329 FT /transl_table=11 FT /locus_tag="BB1692" FT /product="terminase" FT /note="Similar to Bacteriophage D3 terminase orf2 FT SWALL:Q9XJT6 (EMBL:AF165214) (563 aa) fasta scores: E(): FT 1e-25, 32.43% id in 592 aa, and to Bacteriophage P27 FT putative terminase SWALL:Q8W631 (EMBL:AJ298298) (570 aa) FT fasta scores: E(): 1.4e-28, 29.69% id in 586 aa" FT /protein_id="CAE32189.1" FT /translation="MGSVAARDYVGIATKYAEAAVADKGRKRHGRWIRLAAKRFLDDLK FT RARRRGTPFFFDEWHANDACDFIEKLPHVEGKWETPTIVMHPSHVFFVVQLFGFRRRDA FT IKVEGWGDDDTFHPRRFTSALFAVARKNAKSTLASAILLYCLCCEPEEGAQVISAATTF FT DQASIIFRASKRMVEKTPDLAEAFGLATWAKSISRFETGSSYKAVHAKASTQDGLNPSH FT TGLDEIHAHKTADLLNVLQSAAGARANPLWLFTTTEGYTNAGPWAEIRGFVFALLRGVL FT GTQADHFLALFYALDNEDKSAKITQDDEFDESKWIKANPLLDVNPHLKAAIRKEAVEAK FT QMPSKLAEFRIKRCNRPASTASGWVDLTKWAKCGGAVDLDWLAGYPCWGGLDLASTTDI FT AAFRLLWLVEGVWYTHGWRWVPSEAVKQRTERATVPYAGWVEAGYLLQTEGDVTDYSVI FT ERDILAAVQRFDPQQIAYDAWNAADLVNRLVAASVPMVQFVQGTKSYHPAMQALELAYV FT GGKLVHGGDPVLAWCASNLVARRDVNLSMAPDRKRSADKIDDMAALLMAMGLAVASDDA FT EDLSDFFNNAVIG" FT misc_feature 1784563..1786323 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03354, DE Phage Terminase, score FT 1.3e-88" FT CDS 1786326..1787621 FT /transl_table=11 FT /locus_tag="BB1693" FT /product="portal protein" FT /note="Similar to Bacteriophage D3 portal protein orf4 FT SWALL:Q9XJT5 (EMBL:AF165214) (434 aa) fasta scores: E(): FT 2.4e-69, 44.44% id in 414 aa, and to Bacteriophage HK97 FT portal protein 3 SWALL:VP3_BPHK7 (SWALL:P49859) (424 aa) FT fasta scores: E(): 1.5e-31, 31.68% id in 385 aa" FT /protein_id="CAE32190.1" FT /translation="MKQKAQKVGRVRAAVLGWLGRPFGLTDVEAWASIGQRNAAGANVS FT DHSVLQLSAVWACSRLISETIATLPLGMHERRQGSRRPAPQHHLDFILGAQPNADTISA FT VFWESVVAAMLLRGVARCEKLLVGGRLVGLQFLNPDRLSRTRLGDSWEYRYTDDFGRQR FT VIEESRIWSIPGWSLDGKNGVSVLRYGAQVFGAALATDEAAAGTFKRGLMPSVWFKYPN FT KMSKEQREEAREFITGRAAGAVNAGRPIILENGMEVGNLGINPVEAQLLQSRGYSVEEI FT CRWFRVPPWMVGHTEKATSWGTGIEQQMIGFLVFTLGPWLKRIEQSIVKDLLTPAERLR FT YYPKFAVEGLLRADSAARAAFYSVMVNNGILTRDEVRELEDRAPMGGNAAVLTVQTALA FT PLDSLGSNTADQQARNAMANWLKDMMASTADT" FT CDS 1787633..1788508 FT /transl_table=11 FT /locus_tag="BB1694" FT /product="phage-related Clp protease" FT /note="Similar to Bacteriophage D3 ClpP protease orf5 FT SWALL:Q9XJT4 (EMBL:AF165214) (296 aa) fasta scores: E(): FT 1.8e-53, 54% id in 287 aa, and to Rhizobium loti FT hypothetical protein Mlr8523 SWALL:Q982R9 (EMBL:AP003014) FT (281 aa) fasta scores: E(): 1.5e-36, 44.77% id in 268 aa" FT /protein_id="CAE32191.1" FT /translation="MSKKNLPAAPAGRPCAAVSAYMSPRALERWDSGVRAAVEDDAERT FT ISVYDVIGYDWWTGEGVTAKRIASALRSMGAGPVTVNVNSPGGDMFEGLAIYNLLREHQ FT GEVTVKVLGLAASAASIIAMAGDKRQIARAGFLMVHNCWVNAQGNRHDLREFADTMEPF FT DAAMADIYVASSGQDLGEVQRQMDGETWIGGSQAIEQGYADELLPSDQVGKGTSGTSAS FT AVRRIESAMRAAGLPRSEAQRLISEFKSSLSDSAGSGERDATGRGTDHPAALSTTADLA FT ASLTTIFSPR" FT misc_feature 1787633..1787692 FT /note="Signal peptide predicted for BB1694 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.859) with cleavage site FT probability 0.531 between residues 20 and 21" FT misc_feature 1787744..1788262 FT /note="HMMPfam hit to PF00574, DE Clp protease, score FT 1.1e-05" FT misc_feature 1788035..1788058 FT /note="PS00881 Protein splicing signature." FT CDS 1788513..1789712 FT /transl_table=11 FT /locus_tag="BB1695" FT /product="major head protein" FT /note="Similar to Bacteriophage D3 major head protein orf6 FT SWALL:Q9XJT3 (EMBL:AF165214) (395 aa) fasta scores: E(): FT 7.8e-60, 46.58% id in 395 aa, and to Bacteriophage HK022 FT major capsid subunit precursor SWALL:AAF30357 FT (EMBL:AF069308) (385 aa) fasta scores: E(): 1.1e-49, 42.38% FT id in 394 aa" FT /protein_id="CAE32192.1" FT /translation="MSQIDNDIKAINDSLKQVNDQLKTHAEDADKKLRAHQQISEDSKK FT QVDDLLLKQGELQADLRAAMQVIAKLEQGGGSPAKAKSIGQVVAESDELKKFNPSMQGS FT FTVKAAITREDDSAGSLIQPTRVPGIVATPNQRLFVRDLLTWGPTDSSDVEFVRETLFT FT NNANVVAENPTDPKPESDIKFELDSEKVATIAHWIRASKQVLRNARQLQTYINGRLMYG FT LDLKEELQILKGSGVGLNMNGILTQAIAYANPGVVVQGETRLDRLRIAMLQVTLAEYEA FT DGLVLNPIDWTSIELTKTDDKQYLFATPRGLAVPGLWGRPVVATQAMDLNNFLTGAFKL FT GAQGWDGEEANITVSNQDRDNFVKNMVTILCEKQSTVTVFRPQAFVKGTFTGLDAGTGG FT " FT CDS 1789762..1789995 FT /transl_table=11 FT /locus_tag="BB1696" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32193.1" FT /translation="MKVIAKCSFEHNGTRKAGDEFDVSDQAARLLEAKGLVDLSGMDDD FT DQEKSQSATNAAVGGSAAGDDKPVRRRAARRG" FT CDS 1789998..1790327 FT /transl_table=11 FT /locus_tag="BB1697" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf9 SWALL:Q9XJT1 FT (EMBL:AF165214) (106 aa) fasta scores: E(): 1.7e-16, 57.79% FT id in 109 aa" FT /protein_id="CAE32194.1" FT /translation="MSVISLEIAKQFLDVIHDADDAKLQMLLNSAEDEAVQYMNRGLLE FT PVPAAILVDGVPVDADPLTAPLDSMVLGVMLLLQASYQASPDDIAKLRAAAEVKLAPHR FT IGWGV" FT CDS 1790324..1790701 FT /transl_table=11 FT /locus_tag="BB1698" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf10 SWALL:Q9XJT0 FT (EMBL:AF165214) (118 aa) fasta scores: E(): 7.7e-21, 49.19% FT id in 124 aa, and to Bacteriophage HK022 Gp9 SWALL:Q9MCV2 FT (EMBL:AF069308) (110 aa) fasta scores: E(): 0.37, 30.46% id FT in 128 aa" FT /protein_id="CAE32195.1" FT /translation="MMLAHRLRHRVTFEAKGEPLRDENGFIIPGTGGWRPVVLADGLRL FT EDVPAEVLTGHGREFQGGSATQAEVSARVNLRWFPASPTLLASWRLIWDGQIFNIQSAE FT TDATARREWRLRCVDGPSEGQ" FT CDS 1790704..1790922 FT /transl_table=11 FT /locus_tag="BB1699" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32196.1" FT /translation="MSMQFPPVRSPSFPARGTSSQMDRIEASLARVEGKLDILLEALAA FT DGEPDEPPAMTLDGELAGEGRPEGEPL" FT CDS 1790919..1791404 FT /transl_table=11 FT /locus_tag="BB1700" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32197.1" FT /translation="MKVEMKLRGVDDVMRTLQSLPAEVVSKRGGPVKTALARGARYLRD FT RAKENLRATIAQSGDESTGLLVQNVIASRGKPPIGSKGERYLVRVRQKTYTRKGKEPVT FT TRKTAALKEHGSSHQPATPWLRPAVQQHGQRVIELVSADVVRQIEKVVAKARREGRL" FT CDS 1791404..1791775 FT /transl_table=11 FT /locus_tag="BB1701" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf15 orf15 SWALL:Q9MCA6 FT (EMBL:AF165214) (121 aa) fasta scores: E(): 2.8e-10, 37.6% FT id in 125 aa, and to Bacteriophage HK022 gp11 SWALL:Q9MCV0 FT (EMBL:AF069308) (121 aa) fasta scores: E(): 5.7e-08, 32.79% FT id in 125 aa" FT /protein_id="CAE32198.1" FT /translation="MLAPVFKTINTPAVRGHVGANPRIYGSGMAPQAVPTPYITWFTVI FT DNPYDQLSGPPDADSGTVQIDCWTGPDDSQEAVCISLAGAVRDALDAAGIANRIIIHTR FT ETDTKLFRIGLQADFIRGR" FT CDS 1791838..1792335 FT /transl_table=11 FT /locus_tag="BB1702" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 orf15 orf16 SWALL:Q9MCA5 FT (EMBL:AF165214) (173 aa) fasta scores: E(): 2.6e-07, 35.63% FT id in 174 aa, and to Pseudomonas aeruginosa vf2 protein or FT pa0633 SWALL:Q9R3G3 (EMBL:AB030825) (164 aa) fasta scores: FT E(): 4.6e-09, 32.53% id in 166 aa" FT /protein_id="CAE32199.1" FT /translation="MTAGVIKTQGTHLFVLNTLATPDPVILKMACPTGITGLGAGTKSQ FT IDVTCLDATEDQEFIPGLGAPGQVSVPFNFIPTAESHQGILTDLKESGAVLDWIMGFSD FT GVAPPTLDAGDVLVWPVARTAARFQAYIAEVTIDAATNDRVTGTLTLQRSGKVAWNFKP FT AA" FT CDS 1792345..1792677 FT /transl_table=11 FT /locus_tag="BB1703" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32200.1" FT /translation="MEKQGLPDALFVSDEVVAREVELGDGKTHTLHFKAISHVEFNKWV FT AALTSPDEDVRDRAHSRLVVASMVTAEGKPALSLEQANRIKPNVLRKLSDLIAEINDFA FT DMRKKN" FT CDS 1792737..1793003 FT /transl_table=11 FT /locus_tag="BB1704" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32201.1" FT /translation="MQAMSEREFRSWQQFYDESPFDDLHRYHRPAAMLAQVQVGGDFTA FT RLRWLADGVDPGPEQSELGALRMSDQFSAADLRTFEALGMRLS" FT CDS 1793117..1793476 FT /transl_table=11 FT /locus_tag="BB1705" FT /product="phage-related putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE32202.1" FT /translation="MNRMLTWALGVAIAGASLNSVAVGIDEAKIKEVMMQALKDPDSAK FT LQGLTSGVFFNGKENHRYVCGLVNAKNAYGAYSGYEPFVIVLASEGGDRQQRDLLDISS FT YAAELCEKLKKAPAK" FT misc_feature 1793117..1793182 FT /product="phage-related putative exported protein" FT /note="Signal peptide predicted for BB1705 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.942 between residues 22 and 23" FT /note="no significant database matches" FT CDS 1793694..1796516 FT /transl_table=11 FT /locus_tag="BB1706" FT /product="putative tail component of prophage" FT /note="Similar to Escherichia coli O157:H7 minor tail FT protein precursor H or ecs2949 SWALL:Q9EYE1 (EMBL:AP000400) FT (881 aa) fasta scores: E(): 4.9e-18, 24.74% id in 885 aa, FT and to Salmonella typhimurium fels-1 prophage, putative FT minor tail protein stm0918 SWALL:Q8ZQG3 (EMBL:AE008738) FT (1053 aa) fasta scores: E(): 6e-14, 22.86% id in 888 aa" FT /protein_id="CAE32203.1" FT /translation="MGAAFAGISAGTALTAFVQNTINAQNEQAQLAAVLVSTGRAATMS FT ADSLNAMADAIESASTISAGEVTEAQTALLAFTGIAGQEFPRAMQAAADMAARTGMTIR FT ASAETIGRALDIPSQGLAALSRQGFRFTEEQKALVEQLELSGRTAEAQGVVLRALEESY FT GGAAAAARDTLGGALIGLRNTVSALLTDENGSLTFLRDAVEGLNSALGSDAAKAGLNAL FT TVAAGGVAAVIGAKLVAAVLSAGLSMTVFAARAVAASTGMAGVALTLEVAAARMAAMGT FT ASRLATAGLAMVGGPLGVVALTLGAAGYAWLQYGRDARDSASAGAREVADTKRNVDDLV FT TSFKKLNELQRQQVISIKTDDLNAALKENQAAIFELGNAFTPALTEGARAAAQYRADFT FT AEMKAVASDTSLSSEQMAASLAALVESYVSSGRASESSRGRLIEFAQKVIEASGNVAGL FT RQEIEALTGAQAAAADGVAPVINELDKYRAAYDKFLKEFATPGERLKGAEKEWRAALGP FT LFDSDAQKRLNDRFLPKGSAQQASELQGLVKRLEEQRATLGMTADAQERYRIEQAKGSD FT AHRARAIALFDEIQAWKEAEEATKKAAESARYFDAVQREIDLYQRERDIEVAGVGMTDQ FT QREQLEQEVAIRQKYAERRRKLEEDQQVESTRLDQSAYAARIEALRDAEDRQVAILQDS FT AARKREAESSWQLGMARGLGNYVDSALNVASSIEGAVTNAFTGMDDALTGFVRTGKLSF FT KDLADSIISDMVRIAIQQSITGPLAGALGGLLGSWMGSSSAVSGSSLQGIGGTAGGLLD FT SIQFSSGGYTGDGGRFEPAGIVHRGEGVLNQDEIRALGGASGFAALRRSIRTGHAVGGM FT AGSPALPPPAGRSRSGGALQVEIINNGTPQQVTGVNRRLDVSGEVISIVVNDLRRNGRS FT AQAVRGVMGG" FT misc_feature join(1793694..1793747,1794348..1794416,1794444..1794512, FT 1794546..1794614) FT /note="4 probable transmembrane helices predicted for FT BB1706 by TMHMM2.0 at aa 52-71, 272-294, 304-326 and FT 338-360" FT CDS 1796518..1796865 FT /transl_table=11 FT /locus_tag="BB1707" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32204.1" FT /translation="MVVFPSYAKVLLEGFREDPDYGVLRTDMDGGISKQRLRWTTPIVT FT RDVIVHVESVAQKNAFDAWMRSDLNGGGGWFGWTDPLDLILKQARFVSGKVSWSSPGRV FT WRAAAQLETVG" FT CDS 1796867..1797343 FT /transl_table=11 FT /locus_tag="BB1708" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32205.1" FT /translation="MTRQFSTQAKRNVNATSADEPLLELIEITHPDLAVPARFVNDTQD FT IQVEGHAFLACRFDLSIPDDQAEQVPGARLEVDNIGRELTQWLEYSQGGKGAKCRLILL FT LRSNPSNIELDMTMDLTGLEITNFRVSGDLGFKNTLMQSGVAMRFDPLTAPGVF" FT CDS 1797343..1797729 FT /transl_table=11 FT /locus_tag="BB1709" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32206.1" FT /translation="MHWSDRYLNRPYVPEVGDCASFAELVACEVLGIVPGLPGSHEDTL FT RAQAAQIARVKADFADRVAQPVEGHPVLLTSRGDLFHIGVMCQLAGEWWVLHADKSFGA FT VIRQRLRAMTMIDYKIEGFYRWKS" FT CDS 1797756..1801562 FT /transl_table=11 FT /locus_tag="BB1710" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32207.1" FT /translation="MPALMVVHNPFVASEGRKAYCAAFLPGETLGRYCERMGVALPSRV FT VNVWHNGRPVPLALWQRLIPRQGDQVVIRAKGEGGGGGGKVLRTVAMIALVAASVTIPG FT AGIPGFFSGFQLTGTALSLASAGIMIGGSLLINALLPPPTPTSAKLGQGQKYESSSTYS FT IQGGRNRKRPYEPMMLVFGRHKVVPDLAVDPYTEQVGDNQFLRQAFHFGLQGMDVSLTD FT LRIGSTPVEDYKDVQVQRSGANGKLSLIAGNPETIQGFALPQAEGWQTRTTGPDVYCLS FT VELASRLFRINDDGGIASRSVDIRIQYRRVGTSSWIEQGLIGAQFATHYWSLRWRDQQQ FT TEYGSTNPADHTDGDTIPVTGGFYRWRWVPHPYQLGQPWQGIAPDPLKVPAQPGVRLTG FT ARQEPTRRQVTWDVPVGQYEVRVIKVTADINTSRESNETAVSQIMAFQQDKADYTGQVR FT LAMRARATGQLNGAIDEFSAIASAQCLAWTGSAWAKQETSNPAWWYLFFARGKMEGGKR FT VYGGGLSDAEIDIESIKVWGAWCAAKKLTFDYVLTEKMSTAAVLQMIARAGRATLTYQT FT GKLGVIWDAENLPVSAMFGPFNVKAGSFKIAYTNDGTVDEIVGNFINSARGWILDEVRV FT KVPGATTTNNPLQLDFDGCVYEDMAGREANLLAAAQVWKRRRIQWETDVEGLVAVRGDV FT VSFSHDLTEWGYSGRLMPGSGGRTMKLQKKVPSAGSGTVLLRDPDGNMKTVSVVSAVGE FT VDELTIVSDLDGFPMPGDTGYEDCAVFDWAWQFDPLATPGRRFKITAVVPAGDGLRFEA FT VDDDLEYYKSESNPYQYTPPRDGALLGGVVFLITFAETIRSVVNDDVAVEIGWVLSVQT FT RASVTVSINGVSQPSVTTEERRLIVSAKTGDMITATVRPVTGANTGQPRTQDYTVAGLL FT MPLPPVTGLTTVFRDGLTTLVWDRVVDIRQPSYEVRLGPGWANSRTVAITPSLESLAVG FT NGLYWVAARFQYGATTIYGPPDSLLVSGAVLVRNVLEVINEHPGWTGDLSGGAIVHNGE FT LTLVGTGDILMAEDVLALDDVLFYGGVSSGGAYETAESNVVDIGYPAPVRVDFEIDEYA FT LNFGENVLAMDDVLSVDDFLNDSNRQFYHVVPQIRHAQTAGDWTEWRDYVPGTINARYF FT DVRLLLRTDDPLIVPFVRSFTWTIDVPDLVQQGTEVTVPIGGMRVTFPKHFHAKPNIQV FT TTLDAKNGDREVITNTDLEGFDIQMVNISTPVERVINWFAQRY" FT misc_feature join(1798020..1798088,1798107..1798175) FT /note="2 probable transmembrane helices predicted for FT BB1710 by TMHMM2.0 at aa 89-111 and 118-140" FT CDS 1801567..1802343 FT /transl_table=11 FT /locus_tag="BB1711" FT /product="phage-related putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE32208.1" FT /translation="MTQESIAVSTTPPLPGLAMVQQVNAALATIATDFAGPDDPGALAG FT PFMTWADTGNNLLKRRNAAGSAWVQEGVLLRAHAPIIPGGSLPTTDIGPIIVPGVGLME FT WSGAAYAAARSYLPGEVIQQVSFTTTGSTRTSTSPGNAQGVTLTVQPKSTNSILVLNCN FT FYAGIAPSAGNPLGSWRIYETTGTPTPIGTGLRSLYAYASGGSAMGLEAMGHILVPDLA FT NTSLAERRFLLYSWTNQASSAVRTETINYTVTEVSL" FT misc_feature 1801567..1801641 FT /note="Signal peptide predicted for BB1711 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.818) with cleavage site FT probability 0.763 between residues 25 and 26" FT CDS 1802340..1802729 FT /transl_table=11 FT /locus_tag="BB1712" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32209.1" FT /translation="MKEITEFLLSVYPGREWQLPQDGGLADLEWLDGPAPNDLEQQYAD FT YVPSVAPVSVSRFQALAALLQAGLLDAVTAWANDPGTDPLHKLAFETATEFSRTSPTLA FT AGAAALGWSEQQLDALFDAAMQIQA" FT CDS 1802789..1803259 FT /transl_table=11 FT /locus_tag="BB1713" FT /product="phage-related putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE32210.1" FT /translation="MQTLHRSKIMEPSSTGIGGWAAVKLALAFGVPAALAAIIGMVIMP FT PRTAREFVARTVCTVFSSFIFGPMLAIAVISWRPSLIDAAHWVAKRSGTGEEGLLAMFY FT VLGPCMLLAGLPAWWVLGAYMRWMASMREKGFLVWVAEARAKLFGLRGGSAE" FT misc_feature 1802789..1802896 FT /note="Signal peptide predicted for BB1713 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.824) with cleavage site FT probability 0.751 between residues 36 and 37" FT misc_feature join(1802846..1802914,1802951..1803019,1803086..1803154) FT /note="3 probable transmembrane helices predicted for FT BB1713 by TMHMM2.0 at aa 20-42, 55-77 and 100-122" FT CDS 1803256..1803804 FT /transl_table=11 FT /locus_tag="BB1714" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32211.1" FT /translation="MTLLQKITEGAIGPALALLPTTMDTSEARVMLLAICLQESAGVHR FT FQVVQGRPGVRGPARGLWQFEKGTRASRGGVWGVYLHHASRKPLEALCAARSVRFDPDA FT IYGALEYDDALAAGVARLLLWTDPKALPAVGDVEAAWALYLRTWRPGAYTRGTEAQRAA FT LRSKWGSYYSQVLAFMGRG" FT CDS 1803804..1804070 FT /transl_table=11 FT /locus_tag="BB1715" FT /product="phage-related putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE32212.1" FT /translation="MAILSRVWGYLAAAAAAVAAVAIIFVRGRASGRAVERTEREAAVN FT EQAARARKEARDVQNQVAATDDDGVADRLKSDWVRRPGGSGRR" FT misc_feature 1803804..1803869 FT /note="Signal peptide predicted for BB1715 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.984) with cleavage site FT probability 0.430 between residues 22 and 23" FT CDS complement(1804172..1804498) FT /transl_table=11 FT /locus_tag="BB1716" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE32213.1" FT /translation="MKLECSVTRTHRQGERLKDREWDQPVIGIVRMQTAFIQTLNREVP FT MMTMDSLETFGKSRRGAIPDLLEPRLLTFCSDRGMMVVGFEEICGRRYYQGWWIRWDFT FT GTTA" FT CDS complement(1804550..1805209) FT /transl_table=11 FT /locus_tag="BB1717" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage phiE125 gp33 33 FT SWALL:Q8W6R8 (EMBL:AF447491) (223 aa) fasta scores: E(): FT 8.8e-13, 34.73% id in 167 aa, and to Pseudomonas syringae FT pv. maculicola hypothetical 24.0 kDa protein SWALL:Q93TE6 FT (EMBL:AF359557) (213 aa) fasta scores: E(): 3.7e-36, 49.54% FT id in 218 aa" FT /protein_id="CAE32214.1" FT /translation="MCSHYQALKDQERMRKYFAAHPSAEVPADMWPRYMGAFIRRPLEW FT DSGDEAVPEREAATGRWGMIPPGTRPEKLAEASKKNTSNARSETAHQLWTFRNAWAKAQ FT HCIIPADAIYEPDWRSGKAVPTRFTRADGAPLGIAGLWDRYRNAAGEWIDSYTMLTINA FT DDDPLFRDYHQAGKEKRMVVILPDGAYGDWLTAPATDTRDFLLPYPADRLVAAAVK" FT misc_feature complement(1804556..1805209) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02586, DE Uncharacterized ACR, FT COG2135, score 1.9e-05" FT CDS 1805664..1805879 FT /transl_table=11 FT /locus_tag="BB1718" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1565" FT /protein_id="CAE32215.1" FT /translation="MSSHVYKQIELVGSSTVSSDDAIAQAIARASDTLRHLDWFEVTET FT RGHIKDGKVAHWQVSLKIGMRLEADD" FT CDS complement(1806335..1806889) FT /transl_table=11 FT /locus_tag="BB1719" FT /product="putative chromate reductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1563" FT /protein_id="CAE32216.1" FT /translation="MSTYKIAVFVGSLRAASFNLRLARALEKLAPANFEFEHVSLGDVP FT LYNQDHENDMAAPAAKLKQQIADAHGILFVTPEHNRSIPAALKNAIDWGSRPWGHNSWI FT GKTAGIVGTSPSAAGTAMAQQHLRNILAAEGVNVLTTPEVFLQFKEGLIDEQFNITNED FT TRKFLQGWLDRYVAWVTRLAG" FT misc_feature complement(1806392..1806880) FT /note="HMMPfam hit to PF03358, DE NADPH-dependent FMN FT reductase, score 2.7e-24" FT CDS 1807168..1807716 FT /transl_table=11 FT /locus_tag="BB1720" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1562" FT /protein_id="CAE32217.1" FT /translation="MPVSLPVTMLVTRHISPDRYGDFLAWMRQGEILAAGFPGFLGSGV FT LQPPEGGDQYQIVLRFDSEASLARWEQSLPRRMWLERGAALVRASHARRVTGMDSWFGA FT PAGAPPRWKQAVSIWLVYFPMLLLFSTALDAQLSALPLFWRVLATTLCMTPVLSFLCIP FT LVTRVLRGWLHPRAVGAAD" FT misc_feature join(1807513..1807566,1807594..1807662) FT /note="2 probable transmembrane helices predicted for FT BB1720 by TMHMM2.0 at aa 116-133 and 143-165" FT CDS 1807828..1809132 FT /transl_table=11 FT /locus_tag="BB1721" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1561" FT /protein_id="CAE32218.1" FT /translation="MRKLLRKTVLALALGMATPLAVAAAQPKAVVQTYSDIALAGYQDA FT LASAQALRTAIDALIAAPSAQTLQAARQAWLAARVPYQQTEAFRFGNPVVDDWEGRVNA FT WPLDEGLIDYVDAAYGTESDANAFYTVNVIANARISVGGKTIDASKITPQLLSEVLHEA FT DGNEANVATGYHAIEFLLWGQDLNGTGPAPKDRTGTPQERHAGDRPHTDFDPRQCTGGN FT CERRVQYLKAVTDLLVDDLQEMVDNWKAGGAARKVVEEDPKAGLIAMMTGLGSLSYGEL FT AGERMKLGLMLHDPEEEHDCFSDNTHNSHYYNQIGIRNVYLGNYARIDGKTVSGASLSD FT LVKAKDAKLDAEVRAKLDATVQAMEAMKQRAETVETYDQMIAQGNKEGNAVVQAAIDRL FT VDQTRSLERVIAALELGDIELEGSDSLDKPDAVFK" FT misc_feature 1807828..1807896 FT /note="Signal peptide predicted for BB1721 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.646 between residues 23 and 24" FT CDS 1809129..1810640 FT /transl_table=11 FT /locus_tag="BB1722" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1560" FT /protein_id="CAE32219.1" FT /translation="MKSALVVVLAALAHGAGVAAPGRTDLSAEDLARVQAITAPTADFS FT AAESFETMQAGAATVKKLLNADIFSHPSANMTFEGRQRFQVGNGLFRKLWVSAPASTQA FT SDGLGPLFNARSCQACHVKDGRGTVPGFDPDPLERSDAVALLLRLAVEPSSEAERRLLA FT EGKVPFLPDPTYGSQLQNFAVAGLPAEGRLEIEYEPVSVALNGGETATLMKPAYRIEDP FT GYGPLRPDLHLSPRLAPPMIGLGLLEAIHEADILANAAADHGDGVSGKPNWVRDVRTGQ FT KVLGRFNWKAGQPTVEQQSAAAFSNDMGLSTPLFPSHFGDCTPAQAECFKMPHGAQPHL FT GEHEVPGHLMDFVTTYSTNLAVPQRRDADDERVLAGKKLFYQANCVACHVPKYVTRRDA FT AQPEHRFQLIWPYTDMLLHDMGDGLADGVSEEQANGREWRTPPLWGIGLTRLVNPSATW FT LHDGRARTLLEAVLWHGGEAQAARDRVVAMSPGERADLIRFLESL" FT misc_feature 1809129..1809185 FT /note="Signal peptide predicted for BB1722 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.713 between residues 19 and 20" FT misc_feature 1809477..1809494 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 1810281..1810298 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 1810670..1811758 FT /transl_table=11 FT /locus_tag="BB1723" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1559" FT /protein_id="CAE32220.1" FT /translation="MLHGLIPHRWRRAGAALALAAAAGGAQAGLPADLGTRLADGYARP FT AFGRFAQATQSLNEDLGKWCARPDAAGAAQVRTGFAQVARAWAGVEFLRFGPLVQGNRY FT ERLAFWPDTRNVMARQVQAALAAADPALLEPGALAGRSVALQGLPALEFVLYGEAGLLQ FT QPDAPGFAYGCQLAHAMARNAAGLAGELAQAWSAQGEFGRQFTHPAPANDLYRSPQEVA FT AEAVKALSTGLQFARDVKLLPVLGQSAAAARPKRAAFWRSGQTAATLAAGLRGMRAFYE FT AGGYPLGDAGWIDATVKSELDQAAGAAERAQGPAEALAEDGEPRDALALAALVIKNAKD FT VVDQNLAPAVGVTIGFNALDGD" FT misc_feature 1810670..1810753 FT /note="Signal peptide predicted for BB1723 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.987 between residues 39 and 40" FT CDS 1811748..1812854 FT /transl_table=11 FT /locus_tag="BB1724" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1558" FT /protein_id="CAE32221.1" FT /translation="MEIDRRAFLALALAGGAAPCALWATTQADPLYLAARRRGERYEAV FT VLGPDGRDRLAVPMPARGHSFALDAPRRRAVVFGRQPGFFAVAFSVDGARPPLALAAAP FT QRHFFGHGLFLPDGQRMLATENDYEAGRGVLGVYDASAGGGYRRLGEFDTAGIGPHEAL FT LLPDGKTVCVANGGILTHPDYGKLELNLDSMRASLAYLDASDGRLLEKVELDPALHRLS FT IRHLAVAADGAVWFGCQHMGPQSERPALVGRHRRGRAIELYAGPAETLRGFRNYIGSVA FT AGDGGRVIATSSPVGGQVAYWDSATGRCLGVTALADGCGVAPLETGGFLISSGLGAMVH FT GGPDGGAQAMLEAGGQVSWDNHLRRYAA" FT misc_feature 1811748..1811819 FT /note="Signal peptide predicted for BB1724 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.803 between residues 24 and 25" FT misc_feature 1812351..1812389 FT /note="PS00018 EF-hand calcium-binding domain." FT CDS 1812960..1813793 FT /transl_table=11 FT /locus_tag="BB1725" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1898" FT /protein_id="CAE32222.1" FT /translation="MKETLNEISTLMPQLVDLGINLGVALLILILGWWASSLLGGWVRR FT AAQRSPRIDPTIVPMFQSTVIWTVRIFTLIAVLARFGVQTASLIAVLGAAGLAVGLALQ FT GTLQNIAAGIMLLILRPIRAGEYVALSSGSDGTVEEVGLFLTRLVQVDGIHITLPNSTV FT WNATIINYSRNANRRLDIPVTVHYGDDLGEAIARLEALVRGHEMVLQDPAPIVKASEYR FT DNGTVVNVRVWTQAAQYWDLRWDLFHQIRRALGEAGFRAPIPVREIQGGGKDAAA" FT misc_feature join(1813017..1813085,1813128..1813196,1813215..1813283) FT /note="3 probable transmembrane helices predicted for FT BB1725 by TMHMM2.0 at aa 20-42, 57-79 and 86-108" FT misc_feature 1813143..1813745 FT /note="HMMPfam hit to PF00924, DE Mechanosensitive ion FT channel, score 6.2e-52" FT CDS complement(1813800..1814618) FT /transl_table=11 FT /locus_tag="BB1726" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1899" FT /protein_id="CAE32223.1" FT /translation="MRTMVFPGSAPAYPIRYPSTMQETDSGAGPRTLRRGLMVLAALRD FT QGPRGLSVTDIARQTGIQRPTIYRLLAALLDAGLVVPLQGTKKYRTQLAADADLAAPDP FT RVRQMLPVLRRLADRTGDAVFLVVRDGDDSVSLHREIGSYPVQILATYAGKRQPLGVGS FT GGMALLAALPDEIAHAIVQRNSGRLDEYGGMTPQEMHRLIENTRARGYSVVGNHAVRGA FT LGVGCALLDAQGAPVLAVSVTAIIDRMPAQRQREIAGWIGAELARLAPKA" FT misc_feature complement(1813815..1814417) FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 8.8e-08" FT misc_feature complement(1814403..1814468) FT /note="Predicted helix-turn-helix motif with score FT 1869.000, SD 5.55 at aa 51-72, sequence FT LSVTDIARQTGIQRPTIYRLLA" FT CDS 1814720..1815712 FT /transl_table=11 FT /locus_tag="BB1727" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1900" FT /protein_id="CAE32224.1" FT /translation="MTKSQLPRLGRFAVRLFAGILGAAAISATAHAAYPDKPVRIVVGF FT SAGGTTDVIARIMAKELTEALGQSFVVENKPGGGSNIATDYVARATPDGYTLLFVAVTS FT AINQTLYKNVNFDLTKDFAPVALGAKVPNILVLNPSVPVKSVQELVAYAKANPGKLAFA FT SSGSGTSIHMAGELFKQRAGIDVLHVPYKGSAPAVTDLIGGQVQFMFDNMPSSWPHVQA FT GKLRALAVTTTERSASAPDLPTMKESGFENFDVSSWFGLIAPAGTPPEVVNTLNAAMVK FT ALDKPEVLQSYEKLGAVAQKTTPAEFGAFIKSEVEGWAPVVKASGATVD" FT misc_feature 1814720..1814815 FT /note="Signal peptide predicted for BB1727 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 32 and 33" FT misc_feature 1814879..1815700 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.4e-133" FT CDS complement(1815931..1816707) FT /transl_table=11 FT /locus_tag="BB1728" FT /product="probable methyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1901" FT /protein_id="CAE32225.1" FT /translation="MTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPD FT MTAQPEAVALASGALDVLERAAVHDTLEEALAPVTLAFALTARVRDLGPPPCDIREAAG FT LARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAW FT ELRYALLAGTGQPLLPASSAQQANPGAAPADGAAVQALLAHWEQALVAVGFLDPAHPKK FT LMPRMKHLLTRSALSRDEVDMLRGVCTAMIAPNRPK" FT misc_feature complement(1816219..1816689) FT /note="HMMPfam hit to PF00588, DE SpoU rRNA Methylase FT family, score 1.9e-10" FT CDS 1816815..1817597 FT /transl_table=11 FT /gene="suhB" FT /gene_synonym="ssyA" FT /locus_tag="BB1729" FT /product="inositol-1-monophosphatase" FT /product="probable inositol monophosphatase" FT /EC_number="3.1.3.25" FT /note="ortholog of Bordetella pertussis (BX470248) BP1902" FT /protein_id="CAE32226.1" FT /translation="MHPMLNTAIKAARRAGTIINRASLDLERLTVARKGPRDYVTEVDR FT ASEEAIVEVLRTAYPDHAVLGEEFGLQGPEQAEFQWIIDPLDGTTNYIHGLPNYAVSIA FT LLHRRQVTQAVVYDPSRNELFTASRGSGTFLNDRRVRVSGRIRYHDALLGAHWPHSTDP FT DQGSGRFRAMAEGSAGVRRLGSTVLDLAYVACGRLDGFCGVGLKPWDVAAGSLLVLEAG FT GLLADFDGEQGWLDTGNVLAGTPKVFTHMLTALQPRTA" FT misc_feature 1816815..1817591 FT /note="HMMPfam hit to PF00459, DE Inositol monophosphatase FT family, score 1.4e-72" FT misc_feature 1817055..1817096 FT /note="PS00629 Inositol monophosphatase family signature FT 1." FT misc_feature 1817439..1817483 FT /note="PS00630 Inositol monophosphatase family signature FT 2." FT CDS 1817752..1819338 FT /transl_table=11 FT /locus_tag="BB1730" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1903" FT /protein_id="CAE32227.1" FT /translation="MEWLQDPAAWVGLLTLVVLEIVLGIDNLIFIAILADKLPPAQRDR FT ARIVGLSLALLMRLGLLSVMSWLVTLTTPWFSVGPMSFSGRDLILMLGGLFLLFKGTME FT LHERIEGGQSLDTGGPRVYASFWVIVTQIVVLDAVFSLDSVITAVGMVDHLAIMMIAVI FT IAIGIMLLASKPLTRFVNAHPTVVVLCLGFLLMIGFSLLAESFGFKVPKGYLYAAIGFS FT VAIEALNQVARRNLLKLDARRPMRERTATAVLRMLGKRPPASDESDLPSAMPAVPAFGV FT EERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLD FT EVVGIGRAKDLVADLITEGRVRRNRLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEF FT GAIEGLVTPIDVFEAIAGEFPDEDELPDIVAESENVWKVDGAADLHHLEQVLEIEGLID FT ESEDYSTLAGYLLARFGHLPKPGDTCEFEGSHHRRVRFEVLQMDGRRVALVRVERLPYD FT TVDESEAADAD" FT misc_feature 1817767..1818441 FT /note="HMMPfam hit to PF03741, DE Integral membrane protein FT TerC family, score 5.8e-81" FT misc_feature join(1817788..1817856,1817893..1817961,1818004..1818057, FT 1818115..1818174,1818202..1818270,1818307..1818375) FT /note="6 probable transmembrane helices predicted for FT BB1730 by TMHMM2.0 at aa 34-56, 69-91, 106-123, 143-162, FT 172-194 and 207-229" FT misc_feature 1818655..1818819 FT /note="HMMPfam hit to PF00571, DE CBS domain, score FT 0.00082" FT misc_feature 1818838..1818999 FT /note="HMMPfam hit to PF00571, DE CBS domain, score 0.007" FT misc_feature 1819036..1819296 FT /note="HMMPfam hit to PF03471, DE Transporter associated FT domain, score 1.2e-23" FT CDS 1819363..1820226 FT /transl_table=11 FT /gene="bacA" FT /locus_tag="BB1731" FT /product="bacitracin resistance protein" FT /EC_number="2.7.1.66" FT /note="ortholog of Bordetella pertussis (BX470248) BP1904" FT /protein_id="CAE32228.1" FT /translation="MTDSTLHLLKAFFLGIVEGLTEFIPVSSTGHLIVIGDWINFASSS FT GKVFEVVIQFGSILAVMWIFRARLWQLIRGTLTGVRQEVNFTRNLLLAFLPAAVIGAIF FT IKSIKQVFYHPGVVAVTLVVGGFIMLWVERRAPHTPGDAPGAADDTASDERATAHTLEQ FT ISAKQALGVGVAQCVAMIPGVSRSGATIIGGMIAGIQRKTATEFSFFLAMPTMLGAAVY FT DLYRNIGLLSQHDMSAIAVGFVAAFLSALVVVRAVLRFVANHTYRVFAWYRIALGLVVA FT AWIYAK" FT misc_feature join(1819399..1819467,1819504..1819557,1819618..1819677, FT 1819690..1819758,1819981..1820040,1820068..1820136, FT 1820167..1820220) FT /note="7 probable transmembrane helices predicted for FT BB1731 by TMHMM2.0 at aa 13-35, 48-65, 86-105, 110-132, FT 207-226, 236-258 and 269-286" FT misc_feature 1819822..1820175 FT /note="HMMPfam hit to PF02673, DE Bacitracin resistance FT protein BacA, score 8.5e-34" FT CDS complement(1820381..1821157) FT /transl_table=11 FT /gene="lpxH" FT /locus_tag="BB1732" FT /product="UDP-2,3-diacylglucosamine hydrolase" FT /EC_number="3.6.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1905" FT /protein_id="CAE32229.1" FT /translation="MNKLALQGPLWLASDLHLGPATPATAEAFLGLLQAAADEASALLL FT PGDIFDAWIGDDVIRAAPPWLAAVLQGIRAAAGRIPVYLGRGNRDFLIGQELADALGAH FT LLPEPVLLETDYGRILLTHGDEYCTDDSAYQQFRAMVRNPQWQAQFLAMSIPERLAMAE FT QARGESQAANQAKSMEIMDVNPASVEAALREADVDVLVHGHTHRPARHVLSVDGRKRER FT WVLPDWDCDHADPPRGGWLVIDRDGLQCFDLVEDED" FT misc_feature complement(1820534..1821136) FT /note="HMMPfam hit to PF00149, DE Calcineurin-like FT phosphoesterase, score 1.1e-10" FT CDS complement(1821150..1821659) FT /transl_table=11 FT /gene="ppiB" FT /locus_tag="BB1733" FT /product="peptidyl-prolyl cis-trans isomerase B" FT /note="ortholog of Bordetella pertussis (BX470248) BP1906" FT /protein_id="CAE32230.1" FT /translation="MSTNPRVKLHTNQGDIIITLNAEKAPKSVENFVAYTKDGFYDGTV FT FHRVIDGFMIQGGGFEPGMKQKPTKAPIENEANNGLKNDKYTLAMARTSDPHSATAQFF FT INVSDNDFLNFTAPTPNGWGYAVFGVVTEGTEVVDKIKNVKTGNRGFHQNVPAEDVIIE FT KAEVLE" FT misc_feature complement(1821156..1821650) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00160, DE Cyclophilin type FT peptidyl-prolyl cis-trans isomerase, score 7.3e-59" FT misc_feature complement(1821486..1821539) FT /note="PS00170 Cyclophilin-type peptidyl-prolyl cis-trans FT isomerase signature." FT CDS complement(1821788..1822471) FT /transl_table=11 FT /locus_tag="BB1734" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1907" FT /protein_id="CAE32231.1" FT /translation="MTTKPRLCTALLTLAIAVSASAPVLAQSMAGGSAKNRYANQTKLD FT PYPPEGGWQGLANLLEAAKPGVDTRLDPTPSQITDRIEELLNRGANEEALSLIERREAA FT IKGQRGADVQLMFQHARALAALGRADEAIAVYSDMTNQFPELPEPWNNLAAIYASRGEL FT ERAQDSLQMALRANPDYAAARANLGDIQLMMALRTYRQEAARGVPGMKARVEEIESLLK FT DKQPK" FT misc_feature complement(1821932..1822033) FT /note="HMMPfam hit to PF00515, DE TPR Domain, score FT 6.7e-06" FT misc_feature complement(1822394..1822471) FT /note="Signal peptide predicted for BB1734 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.971 between residues 26 and 27" FT CDS 1822711..1824168 FT /transl_table=11 FT /gene="cysS" FT /locus_tag="BB1735" FT /product="cysteinyl-tRNA synthetase" FT /EC_number="6.1.1.16" FT /note="ortholog of Bordetella pertussis (BX470248) BP1908" FT /protein_id="CAE32232.1" FT /translation="MLHIYNTLSRTKEPFKPAHAGQVRMYVCGMTVYDYCHLGHARMLV FT AFDVVQRWLRASGLAVDYVRNITDIDDKIIRRAVETGRRIGEVTEYYIAAMHADERALG FT VQPPDREPRATQYVGEMLDIIGRLESKGLAYRAEDGDVNYAVRGFADYGKLSGKSLDDL FT RAGERVAVGSAKRDPLDFVLWKSAKPQEPDDTKWESPYGLGRPGWHIECSAMSKTLLGL FT PLDIHGGGPDLKFPHHENEIAQTEGAFGGALANVWMHCGPLMVDADKMSKSLGNFRTIR FT QTIAQGALSDTQAEYAVNPREAEMLRFFIVRNHYRSPQNYAPDNLVDAQNALDRLYQAL FT QNTAADGQGVDWSEPQAQAFKAAMDDDFNSSGAVAALFELASEANRTGSARAAGQLKAL FT GAVLGLLQQDPPAYFQSPTRYSAAAREQGAPAAALDAAAIEARIAERAAAKAARDFARA FT DAIRAELRAAGVELDDKPGGLTQWRRA" FT misc_feature 1822750..1824120 FT /note="HMMPfam hit to PF01406, DE tRNA synthetases class I FT (C), score 1.1e-182" FT CDS 1824189..1824833 FT /transl_table=11 FT /locus_tag="BB1736" FT /product="DNA-3-methyladenine glycosylase" FT /EC_number="3.2.2.21" FT /note="ortholog of Bordetella pertussis (BX470248) BP1909" FT /protein_id="CAE32233.1" FT /translation="MSSADIVIVKPDYWDDAVAHLMRRDRILKRIIPQHGETWLTSRGS FT PFVTLARAIIGQQISVKAADALWQRFLETVGKRPTPATVLRAGLPALRAAGLSQRKAEY FT LVDLATHFGQRLVHPEKWAAMDDEAVIAELVAIRGIGRWTAEMFLIFNLQRPDVLPLDD FT LGLLKAISLHYFSGEPVSRFEAREVSLAWQPWRTVATWYLWRSLEPAAVQY" FT misc_feature 1824327..1824776 FT /note="HMMPfam hit to PF00730, DE HhH-GPD superfamily base FT excision DNA repair protein, score 3.3e-05" FT CDS 1824870..1825835 FT /transl_table=11 FT /gene="accA" FT /locus_tag="BB1737" FT /product="acetyl-coenzyme A carboxylase carboxyl FT transferase subunit alpha" FT /EC_number="6.4.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1910" FT /protein_id="CAE32234.1" FT /translation="MRNTFLEFEQPLAELENKIEQLRYVQADSAVDISDEIGRLQQKSQ FT NLAKEIYGKLTPWQTALVARHPQRPYTLDYVREIFTDFHELHGDRMYADDQSIVGGLAR FT FNGSACMVIGHQKGRDTKERAARNFGMPRPEGYRKALRLMRLAEKFRLPIFTFIDTPGA FT YPGIGAEERGQSEAIGRNLYAMAELKVPVICTVIGEGGSGGALAIAVGNAVLMLQYATY FT SVISPEGCASILWRSADKAPEAAEALAITAPRLKDLGLVDRVVNEPVGGAHRDPRVMAR FT LLRRALGDALRQLQGLGPEQLVDQRLQRLMSYGRFQEVRA" FT misc_feature 1824879..1825313 FT /note="HMMPfam hit to PF03255, DE Acetyl co-enzyme A FT carboxylase carboxyltransferase alpha subunit, score FT 4.4e-86" FT CDS 1825896..1826930 FT /transl_table=11 FT /locus_tag="BB1738" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1912" FT /protein_id="CAE32235.1" FT /translation="MSTSTAAPAPSLSDLCPAALRRPVAAALRALDPAPARLAVAVSGG FT ADSAMLAVAAAAALPPGCTLRLFHVHHGLQAAADQWAAQVRGLGALLGVPVDEARVTVP FT PGQGLGMEAAARLARYQALAGLARQHGVRHILLAHHRNDQAETVLLRLLRGTGLQGMAA FT MAPLSERDGVAYLRPWLDVDRAAILALAGAVRAQCGWQAVQDPTNTDPRYARAAVRTQL FT APALDARWPGWQAIVARHARQMAEAAEIVAEVARADFDTLEPADAGRSFSLAAWRGLSA FT ARQAQALRHWLASQDAPMPTEARLAELQRQLRQLHALGHDRHLRWQHAGRVVRCERGRV FT WIDD" FT CDS 1827003..1828295 FT /transl_table=11 FT /gene="ask" FT /locus_tag="BB1739" FT /product="aspartokinase" FT /EC_number="2.7.2.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP1913" FT /protein_id="CAE32236.1" FT /translation="MRACQPEYEMSLIVQKYGGTSMGSVERIKNVARRVAKWHAAGHKV FT VVVPSAMAGETNRLLSLAREISPQPDGRELDMIAATGEQASSGMLAIALQAEGVPARSY FT AGWQVPVRTDSSYTKARIKSIDDKRVLADLDAGRVVIVTGFQGVDDDGHITTLGRGGSD FT TSAVAVAAAIKADECLIFTDVDGVYTTDPRVVPEARRMAVVSFEEMLEMASLGSKVLQI FT RSVEFAGKYHVPTRVLSSLTDPLIPLEEEMRSGTLITFEEDEKMEAAVVSGIAFSRDEA FT KITLLAVPDKPGIAYSILGPVAAANIDVDMIVQNQSVAGTTDFSFTVNRNEYQRTLDLL FT KREVIPAVSARELVTDEKVAKVSIVGIGMRSHVGVASLMFQTLSQEGINIQMISTSEIK FT TSVIIDDKYMELAVRSLHKAFGLDQVPGDQV" FT misc_feature 1827033..1827719 FT /note="HMMPfam hit to PF00696, DE Amino acid kinase family, FT score 2.8e-76" FT misc_feature 1827042..1827068 FT /note="PS00324 Aspartokinase signature." FT misc_feature 1827846..1828061 FT /note="HMMPfam hit to PF01842, DE ACT domain, score FT 1.7e-08" FT misc_feature 1828089..1828286 FT /note="HMMPfam hit to PF01842, DE ACT domain, score FT 1.1e-10" FT tRNA 1828380..1828472 FT /note="tRNA Ser anticodon GCT, Cove score 69.50" FT CDS 1828838..1829338 FT /transl_table=11 FT /locus_tag="BB1740" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1915" FT /protein_id="CAE32237.1" FT /translation="MKQQHEPGIAVVVGPDEGDSFWQPVPANGFVRTLLNRANTGASVD FT FSAGTQTVAPGCHVREHFHDDREEVIFITEGTGTALIDGVEHPLAPGACLFLGKSRKHS FT FLNAGPEPLSFFWILMPGGLDDFFRQIGRARQPGEPAPQPFARPADIDRIEANTVFGWT FT AKS" FT misc_feature 1829114..1829137 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1829380..1829694 FT /transl_table=11 FT /locus_tag="BB1741" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1916" FT /protein_id="CAE32238.1" FT /translation="MFIEERDYRIKPGKAGLFVATYEAHGLALQKKYLGRFLGYFMSEI FT GELNHVVAWWAYDSLDERDAARSRMLADPQWQAYLERVTDLIDLQQTRILKPVSFSPIQ FT " FT CDS 1829704..1830645 FT /transl_table=11 FT /locus_tag="BB1742" FT /product="putative 3-hydroxyacyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1917" FT /protein_id="CAE32239.1" FT /translation="MNHVAVIGGGIIGASWAVVFARRGLEVTIVERDAACLAGLPARLA FT GMIERSASLLGAGEQPGDVAARIGATDALAAAVGRADYVQEAVSENLALKRTLFAELDA FT LAPAHALLASSTSTYGASQFTEALAGRARCLVAHPMTPPHLSPVVEMAASAWTDPQVLA FT GAEAFMRSLGQHPVRIRKEIPGFVLNRLQGALLMEMFRVIADDVISPADADALISQGLG FT LRWATLGPLEGVDLNAPGGIADYLQRYGHIFNDMAVGQGLPAPVDAELISALDGAMRAA FT LPLERLEAKRGWRDRAIAGVRVALHDYTGEKP" FT misc_feature 1829704..1830252 FT /note="HMMPfam hit to PF02737, DE 3-hydroxyacyl-CoA FT dehydrogenase, NAD binding domain, score 5.3e-28" FT misc_feature 1830256..1830564 FT /note="HMMPfam hit to PF00725, DE 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain, score 1e-05" FT CDS 1830642..1831166 FT /transl_table=11 FT /locus_tag="BB1743" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1918" FT /protein_id="CAE32240.1" FT /translation="MKLIRAVDGLNRLACWLMAGLMLGMTLCTLWQVSVRFLLTGLGWN FT VAAPWSEEVSRYLMIWIIFLGAGVACRKAQLIALELVVTLLPAPLGRALRFAALLGCLV FT FFTLMIYLGLEFMEFGAIETSPVLSMPKTWIYLAMPVGFGLMFLNTATLIAECLLQGID FT IRHASQQEAQE" FT misc_feature join(1830678..1830746,1830810..1830878,1830912..1830980, FT 1831038..1831106) FT /note="4 probable transmembrane helices predicted for FT BB1743 by TMHMM2.0 at aa 13-35, 57-79, 91-113 and 133-155" FT CDS 1831169..1832437 FT /transl_table=11 FT /locus_tag="BB1744" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1919" FT /protein_id="CAE32241.1" FT /translation="MLSAVVLLLLLFAASIPVALSLGIAPLPALLARDVPLLAVPQTMF FT ESMDSFALMAVPFFVLAGRLMQTGGIAGRLMDLGLALIGWVKGGLGGAAVLTTMFFSTI FT CGSSSATTAAIGSVMIPEMERRGYPRPFAASVVASSGELGVILPPSVPMIIYAMLTGTS FT VAQMFVAGILPGLLIGLSLIITILIMSRLGDYGGSQRVSVGEWALNVWRALRRASLSLL FT MPVIILGGIYGGLFTATEAAVVAVAYTFVVSVFIYREIKWKDLPEIFWSSAVTSGIVLL FT IVGFASVFAYVLSLYQAPQQVAALLLGVSDNPLVFLLLVNIALLVVGLFMETFAAILIL FT APVLAPVAVSLGIDPVHFGLIVIVNLAVGMVTPPVGVNLFLVCGIARVSMECLMRPLSV FT FLGVLLLDLMIITYGPVLYARFF" FT misc_feature 1831169..1831231 FT /note="Signal peptide predicted for BB1744 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.458 between residues 21 and 22" FT misc_feature join(1831187..1831255,1831298..1831366,1831400..1831468, FT 1831580..1831648,1831667..1831735,1831841..1831936, FT 1831970..1832038,1832081..1832149,1832168..1832227, FT 1832255..1832323,1832357..1832425) FT /note="11 probable transmembrane helices predicted for FT BB1744 by TMHMM2.0 at aa 7-29, 44-66, 78-100, 138-160, FT 167-189, 225-256, 268-290, 305-327, 334-353, 363-385 and FT 397-419" FT misc_feature 1831553..1832038 FT /note="HMMPfam hit to PF00597, DE DedA family, score 4e-06" FT CDS 1832466..1833449 FT /transl_table=11 FT /locus_tag="BB1745" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1920" FT /protein_id="CAE32242.1" FT /translation="MNVVKSLFAALALAGASFGASAEPIQINIGHALGDTSSYQVAGLH FT FAELMKQKVGDKVKVTLYPSGGLGGELKLVQGARTGVVDAMIIAQASLENTVREYRVLS FT LPYLFTDYEEANRIMQGPVGDRLLDVLPKYNMVGLGWGAVYARSLASMKPVPDLAAMKG FT LKVRVIQSPGFVEAYRALGSQPTPTAYAELFLSLQNGVVDAAELSPDQTVADGFAEVIK FT YYSVTAAHQLPSLFIISKAKFDRLPEDVRKAVEEAGRESMQVAVKFQDRKLAEAFDVLK FT QRGVQVQYPDQAPLREAARGAWDQIAKAAPGGEQFLVEIEAARAAK" FT misc_feature 1832466..1832531 FT /note="Signal peptide predicted for BB1745 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.986 between residues 22 and 23" FT misc_feature 1832550..1833395 FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 1.7e-61" FT CDS 1833446..1834255 FT /transl_table=11 FT /gene="bioH" FT /locus_tag="BB1746" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1921" FT /protein_id="CAE32243.1" FT /translation="MIRQRMTDFTVILPDGARLAARETGAGEAVLLVSGLGGTGAFWTP FT VAAGLQGRRCVMFDQRGVAGSTRGDAAVDIARLAADAWAVLDARGIERAHLVGHSTGGC FT IVQEMALSAPARAASLVLGGTWGGRNAYMQSLFAMRAALLEASPALYEQAGAYLSYPAA FT WLLAHPEAVPAAAAPWPAQRVAVVRERIAALLAYDRLDDLPGLDAPALVLGARDDQIVP FT FALQQQLARVLPGAQLRPLEHGGHFFPIVRGADYVAALLDWLGHHSL" FT misc_feature 1833602..1834237 FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 2e-25" FT CDS 1834252..1835055 FT /transl_table=11 FT /locus_tag="BB1747" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1922" FT /protein_id="CAE32244.1" FT /translation="MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL FT AGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGCLRAGLDMIICSAGALADDALRA FT RLIAAAEAGGARIRVPAGAIAGLDYLQAVAGRDDAEVVYESRKPVAAWRAELPGMGIDP FT DTLAESRTLFSGPAREAALRFPKNLNVAATLALAGIGMTRTRVEVVVDPRARGNQHRIQ FT VRSPLGEMQIELVNAPSPANPKTSWLVAQSVLATIRRHLARFTIG" FT misc_feature 1834252..1834320 FT /note="Signal peptide predicted for BB1747 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.986) with cleavage site FT probability 0.626 between residues 23 and 24" FT misc_feature 1834261..1835046 FT /note="HMMPfam hit to PF01958, DE Domain of unknown FT function DUF108, score 5.3e-44" FT CDS 1835070..1835837 FT /transl_table=11 FT /locus_tag="BB1748" FT /product="probable short chain dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1923" FT /protein_id="CAE32245.1" FT /translation="MTQRLSGRIAIVTGAGSGIGEATARLMAREGAVVVVADKAIEAAE FT RVAQAIVAEGGRAQARQADVGEAQSVRALVDAVAARWERIDVLVNNAGYGIAATVVDTD FT EADWSALMRVNVDGVFLGCKYVIPIMQRQGAGVIVNTASAGALVGLRQRAAYCASKGAV FT AALTRAMALDHATEGIRINCVAPGTIESPYFREIYARSDDPEALRASLAARQPMNRLGQ FT PEEVARAIVFLASDDASFATGSTLVLDGGLTAA" FT misc_feature 1835085..1835825 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 8.9e-87" FT misc_feature 1835496..1835582 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 1835925..1836563 FT /transl_table=11 FT /locus_tag="BB1749" FT /product="probable TetR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1924" FT /protein_id="CAE32246.1" FT /translation="MKATPAQVPMKERIKEVATDMLIAHGSSGFRFQQIAQALDCTRGN FT IHYHYRHKHELVEDVTIEYCQRTIGHFDQIWLSDSTLSQKIQLSMQFNEMRYLKRNPQG FT DTSHPWSLIARMRLESALITPAAREALARYSHELQRSVVAGVRRAVEKGELRPDTPVEM FT VALPIIEMANSADPITRDAGRFDRLRQMYQAVDRLIHDAYGMAGHKPAP" FT misc_feature 1835964..1836104 FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 0.0015" FT misc_feature 1836012..1836077 FT /note="Predicted helix-turn-helix motif with score FT 1410.000, SD 3.99 at aa 30-51, sequence FT FRFQQIAQALDCTRGNIHYHYR" FT CDS complement(1836568..1837521) FT /transl_table=11 FT /locus_tag="BB1750" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1925" FT /protein_id="CAE32247.1" FT /translation="MSPLPVGLAKPKALHEPSFAQLGVFHAIMITGSVSRAARLMGMTQ FT SAASKMLRQLEDDTGLRLFERQHQRLVPTPHAQGLQDSVEQLYGAYGVVQRQIDSLADP FT DTGHVNVAAIPTQATTFLPQAIKRLRERYQGITVTVEILANQPIVDRVQSGQADFGLVH FT DITPSVSTLNEDLGLQHVVCVAPAGHRYAGLPHVAAHDLRNETFLSYGPQTNFGAMLET FT AFASAGVRMPVAVEVTSSAALLALIRAGVGVGLVEPAAIAPFGATGLVIKPFLPALPVR FT SRIVRSRLRPLTRHAELLLEAYRAVVLQARPDSFQA" FT misc_feature complement(1836598..1837218) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.7e-35" FT misc_feature complement(1837288..1837467) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.8e-21" FT misc_feature complement(1837333..1837425) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1837363..1837428) FT /note="Predicted helix-turn-helix motif with score FT 1623.000, SD 4.71 at aa 32-53, sequence FT GSVSRAARLMGMTQSAASKMLR" FT CDS 1837633..1838757 FT /transl_table=11 FT /locus_tag="BB1751" FT /product="putative extracellular solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1926" FT /protein_id="CAE32248.1" FT /translation="MKMSVPQDGWLADAAELALQSPGLTSARRRQLLGMLGAAGLASLA FT PMRPAAAAADRIVVCNWGGDAIKNQPLVWGKPYEKATGTKVEFDGTGPSFGKIRTMVES FT RNVAWDVCDANLAAGHSLGKRGYLEPIDYGVVDRNKVRPGFSSEFGVSHFIYSFVLTYD FT KQAFGDRPPRTWADFWNTKDFPGTRILPDRVLATLEAALMADGVPADASQLYPIDERRA FT LDKIAAIKDKTIFWKTGAESQQLLRQGEATMGLVWHTRATVMRREPGSTIDFTWNQGIL FT IPAGWLVPKGNPAGRKVFDFIASTQSPESQIELLRLMGNGPANPAANALVPPELRQDNP FT TDEENFRQQVVANYTWHGDNQDRIYNEYVKVITG" FT misc_feature 1837816..1838751 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01547, DE Bacterial extracellular FT solute-binding protein, score 0.03" FT CDS 1838768..1840408 FT /transl_table=11 FT /locus_tag="BB1752" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1927" FT /protein_id="CAE32249.1" FT /translation="MTMYADLVLHGGSIATLDDKLEQAQAVAIAAGRIIAVGSDAHCLA FT LAGPGTRRIGLGGACVMPGINDSHCHPDGQAVKAGRWDDVSQVATQQALLARIADFHRR FT MPAGAWYLGFRFDDTHSGGYPARQALEQAAPGRPVFLLRRDAQVGLASAPALAALLASG FT LATQVPPHCLDAATGLARGRGVFAFTTHIAAADSLDDYLEGFPTLFAEMGRMGITSVHN FT ALTSALAVQAYRALHGAGRLPVRVGMMLNGRDQRLVDETLAAGLRFGAGDDRLYLLGVE FT YGSDGSTSGRTAAYYQPYVGEEGGDGRPANRGDVNFSAEDLAAKVGRVMAAGLQAAATG FT NGDRGIDFALDAFEQGLRAHPGAVPPRIEHCCCAPPAIQQRMAALGVIDSSAAGFAYNL FT GDAYLRNRPSAEMAWMWPHRDMLDRGVLVCAHSDAPVCERNPFLGMWSMVTRKTASGAS FT LGAGQAITPLEAMRCYTANPARAEGQAARKGTLSPGKLADLIVLDRDPCAVDPDEIRHT FT QVLATLVGGQATYRAAGAPSWADELPMRE" FT CDS 1840411..1841238 FT /transl_table=11 FT /locus_tag="BB1753" FT /product="putative ABC transporter, permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1928" FT /protein_id="CAE32250.1" FT /translation="MRRSLPALLVLPAAVLIGGMFLLPVLRILAISFTEPHAGLGNYAA FT LFTEPLYLKIMATTARICAWTTLIALGLGYVLAYVMANSSPRMRSWMIIGLLVPFWLSV FT LVRAFAWVLLLAREGPVNATLMALGVIDSPLALLRNETGVLIGMVHYMIPYAVLPMLTN FT MLGIDRSLMAAARALGAGPVATFLRVYLPLSLPGVLAAGVLVFIFSLGFFITPALLGGG FT KTVMVAQYIEFGISETMNWGISTAFAATLLVAVIMSLVLVSRVVRVPSLFGAP" FT misc_feature 1840411..1840500 FT /note="Signal peptide predicted for BB1753 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.973) with cleavage site FT probability 0.689 between residues 30 and 31" FT misc_feature join(1840429..1840497,1840582..1840650,1840687..1840755, FT 1840843..1840911,1841002..1841070,1841128..1841196) FT /note="6 probable transmembrane helices predicted for FT BB1753 by TMHMM2.0 at aa 7-29, 58-80, 93-115, 145-167, FT 198-220 and 240-262" FT misc_feature 1840897..1841106 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 4e-08" FT misc_feature 1841059..1841082 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1841235..1842038 FT /transl_table=11 FT /locus_tag="BB1754" FT /product="putative ABC transporter, permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1929" FT /protein_id="CAE32251.1" FT /translation="MSVRPSWWFAAAAVVAALVLAFLFLPALVVIPVSFTDRSYLSFPA FT ESWSWQHYRQLVDSPVWRGSLLQSVAVSAVSTLAATLLGAAAAIGAWRLGARLGALVRL FT LALLPLIVPTIVGALAYYRLYIDLGLLDTFTGVVIAHVVAAMPFVFVSVGSALANFDPR FT LEQAARSMGARPWQVLWRITLPGVRSGLVSGAIFAFIVSWDELVVLLFVTTRNVYLLPR FT AMWDGINENVDPTIAAVATLMIVITFICLCAERLLAHHRQKQELS" FT misc_feature 1841235..1841321 FT /note="Signal peptide predicted for BB1754 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.857 between residues 29 and 30" FT misc_feature join(1841253..1841321,1841442..1841510,1841529..1841597, FT 1841640..1841708,1841769..1841837,1841940..1842008) FT /note="6 probable transmembrane helices predicted for FT BB1754 by TMHMM2.0 at aa 7-29, 70-92, 99-121, 136-158, FT 179-201 and 236-258" FT misc_feature 1841700..1841921 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 2.2e-12" FT misc_feature 1841703..1841789 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1842035..1843126 FT /transl_table=11 FT /locus_tag="BB1755" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1930" FT /protein_id="CAE32252.1" FT /translation="MNAAATTPTPLLRVRALNKRFGAFQALRGVDFELGAGEFLTLLGP FT SGSGKTTTLMSIAGFVAPTSGDILYQGASITGQAPEARGFGMVFQGYALFPHMTVEQNV FT RFPLAIRGVGREQARRRAQQALEQVQLGSYGARYPRQLSGGQQQRVALARALVYDPRIL FT LLDEPLSALDKKLRADLQWELRKLNKESGASFLYVTHDQEEALSMSDRIAIFNEGGIAQ FT IGSPTELYERPANLFVAGFLGRSNVLAGKVRQAGADGVAVEYEGGVLEVPKPRRQYAPG FT EAVSLVVRPHQMRLDAAGRQGLAAKVEAISYAGNLMNYLLRTPRGTALFAEAVAGAGAA FT LRQDDLVSVGLDAAAVSLLEAAD" FT misc_feature 1842143..1842688 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.2e-64" FT misc_feature 1842164..1842187 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1842458..1842502 FT /note="PS00211 ABC transporters family signature." FT tRNA 1843200..1843276 FT /note="tRNA Arg anticodon ACG, Cove score 86.25" FT CDS complement(1843504..1844532) FT /transl_table=11 FT /locus_tag="BB1756" FT /product="probable NADH-dependent flavin oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1931" FT /protein_id="CAE32253.1" FT /translation="MNLLSPIDIAGIALRNRIAVAPMSRTQADAHGHPAAETAAYYARY FT ARHGAGLVITEALYTAGPAARAYFNQPGLASEAQAEHWRATVRAVHQEGGRVIAQLQHA FT GKLAEPGLHARPLGPVDGAAQGLSWQTQQPNAPAHAATAEEIERIIEGFALSARLAHYA FT GFDGVEIHGARGYLVNDFLSAYNVRDDEWGADRARIAEAVLRAVRQSCPLPIGFNYSIY FT KMDEYRYQPPGGGAEIAALLARLCQAGADILHISSRRVLKPEPWGGLLAQLARAAAPKA FT LMVNGGLATLQDCETALAATQADLVSLARPFLANPDWLARSLAGEPLRAYEPGMEQRPL FT LD" FT misc_feature complement(1843546..1844529) FT /note="HMMPfam hit to PF00724, DE NADH:flavin FT oxidoreductase / NADH oxidase family, score 3.3e-42" FT CDS complement(1844529..1845395) FT /transl_table=11 FT /locus_tag="BB1757" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1932" FT /protein_id="CAE32254.1" FT /translation="MAESRQEDYFINGLAKGLAIIQAFNNEARALTLAEAAYRTGLSRA FT AARRVLLTLVELGFAARCGDRHFALTPRVLSLGYAYLSSMPLWRFAEPVLEALVEELRQ FT TCSIAALDGTELVYVARIPLHRTLNQGLSIGSRIPLYCHSAGRVLLSGFTPEQLESYLQ FT TAELRPLTARTVTERTALRDIIQEVRRRGYAWSCGEVEDHTTGLSVPIFQHGRLIAALN FT VSRMHSADDESLWCGSYLQSLRRAAGRLTAALSVDHNPRIVRMERSPDCPATLPATGGE FT PCLPAKP" FT misc_feature complement(1844556..1844573) FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT misc_feature complement(1844637..1845194) FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 8e-41" FT misc_feature complement(1845240..1845305) FT /note="Predicted helix-turn-helix motif with score FT 1388.000, SD 3.91 at aa 31-52, sequence FT LTLAEAAYRTGLSRAAARRVLL" FT CDS complement(1845404..1847524) FT /transl_table=11 FT /locus_tag="BB1758" FT /product="putative pimeloyl-CoA synthetase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1933" FT /protein_id="CAE32255.1" FT /translation="MSTLADNAPRMAGAGDWIDAALAPRSVAIVGASDNPEKIGGRPIK FT YMLQHGYQGRILPINPGRDRVQGIAAWHSLDAVDVPIDMLLVCVAGEAAVQAVRDGARL FT GVRVCVVISSGFAETGEPGRQAQEHMKAAAAAAGMRLLGPNTQGLANFSNGALATFATL FT LGEVAPADGPVAVISQSGAMSMVPYAHLRAEGIGVRYSVATGNECDLNVADFTEAVLRD FT PEVKLILLYMESLPAPATLARAAALARSRQVPVLALKAGVSPQGLQAAQSHTGAIATED FT KALDAWFRQHGILRVADARSLVMGAQLLLRCGHLPGNRLAILSNSGAACVTGADAAERH FT GLQVPPLPTETRARIDAVLPGFASSLNPIDLTAALLSNNHLFGQVLPILASARACDALF FT ITLPMSGKGYDTDQFARDAAAFTAETGLPVVVSCPLAASRRIFAQAGLATFEHDEDALA FT ALGQLARLSGLRETALRLARPAPHAPAAPVPRTAGLLSEADSLEQIEAIGIRTAPWRLC FT LDADSMGSALGSLPGPWAVKACSAQIPHKSEYGLVHLGIADEQRARALFPVLRQEVLGM FT GKSFDGVIVASMVKPRREFMIGARWDSQFGCIVIVGDGGKYVEAMPDVATLVYPFDQAH FT AEQCLRKLRVAALFDGVRGENPLPVQELAHAATRLGAWLHAQQGAVASVDINPLIAGPD FT GRLYAADALVEI" FT misc_feature complement(1847138..1847464) FT /note="HMMPfam hit to PF02629, DE CoA binding domain, score FT 5.2e-07" FT CDS complement(1847525..1848550) FT /transl_table=11 FT /locus_tag="BB1759" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1934" FT /protein_id="CAE32256.1" FT /translation="MSRRRSRGMSACHTEAVQQRRNTMKWIASMALALCAGGAFAADYP FT TRPITLIVPYGPGGTNDILARAIANKISPTLGQTVVVNNRPGAGGNIGAQQVATAEPDG FT YTLLLASSGVFAVNKWLYRSLRYDPAQAFAPVILAGSVPNVLIVDTEVPAKTLPELVKY FT AKSAQPSLNYASMGTGTSGHLCAELFKAQAGIEAEHIAYPGSAAALTALLGHQVQLMCD FT NLPTALPQIKAGRARALAVSSAERAPLLPDTPTVAESGFPGFDATAWFGIAAPAGTPAP FT IVERLNKEINAALQAPDVARILSEQGVSFRPNTPAQFSQFISAESAKWRDVIERTGSRA FT D" FT misc_feature complement(1847537..1848361) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 5.2e-128" FT misc_feature complement(1848428..1848550) FT /note="Signal peptide predicted for BB1759 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 41 and 42" FT CDS complement(1848550..1848942) FT /transl_table=11 FT /locus_tag="BB1760" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1935" FT /protein_id="CAE32257.1" FT /translation="MHSSLQAVLPPGANPNSTFSPAVRAGGFLYISGMTALNEQREIVG FT VGDIAAQARYIYQKIAAVLAQAGGNLSQVVETVDYVTTFDGYGQTADVRREVFGAGPFP FT AATGVLVSGLVRPAALIEIRAVAYLG" FT misc_feature complement(1848556..1848912) FT /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP, FT score 2.7e-20" FT CDS complement(1848946..1849434) FT /transl_table=11 FT /locus_tag="BB1761" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1936" FT /protein_id="CAE32258.1" FT /translation="MQPPSHAPRQLAAADLAVGQVVAQREIRLDAQAFAQFAALTGDAH FT PIHYDAGYAQRQGLRAPIAHGLLLVAISALGATPLSAQLHDAMVAMVGVEAVFMRPVYV FT DETVQCVYRVAQIEHVAKGRSKTTIAVSIHTTDAPPDAARQAHCVVHLTFLLKTHLQG" FT misc_feature complement(1849021..1849392) FT /note="HMMPfam hit to PF01575, DE MaoC like domain, score FT 2.2e-06" FT CDS complement(1849448..1849783) FT /transl_table=11 FT /locus_tag="BB1762" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1937" FT /protein_id="CAE32259.1" FT /translation="MQRTLDITQAMIDGYGRINGDNDIIHYDHDYAVQRGFRGTLLHGP FT HMTALAADLGARRYASDWLYRGKLHTKWIGPVCPGDTFVATLNEQGEIEAVSGGKTVMV FT GSASLAD" FT CDS complement(1849790..1850239) FT /transl_table=11 FT /locus_tag="BB1763" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1938" FT /protein_id="CAE32260.1" FT /translation="MTRPSDIKPREGDTPGTPYAAFVEGAALGPVSFDITPAIVQEYFE FT ASQADPALYRVDGRQAAAPNVILPYMTVPVYQTYPPIQGIVMAELEMSWHRPIWADETT FT RVTATGTILRKFEKRGRRYVQWEGRFRGADGQPIATLLNTFHVPE" FT CDS 1850447..1850746 FT /transl_table=11 FT /locus_tag="BB1764" FT /product="putative ArsR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1939" FT /protein_id="CAE32261.1" FT /translation="MAINTEDILKALAHPARRNILAWLKEPQRHFPQQEHPLELGVCAG FT QFERCGLSQSTVSTHLAILQRAGLIQSRRVGQWVFYQRNEACIAEFLQTMQAEL" FT misc_feature 1850471..1850740 FT /note="HMMPfam hit to PF01022, DE Bacterial regulatory FT protein, arsR family, score 4e-09" FT misc_feature 1850567..1850632 FT /note="Predicted helix-turn-helix motif with score FT 1176.000, SD 3.19 at aa 41-62, sequence FT GVCAGQFERCGLSQSTVSTHLA" FT CDS 1850788..1851900 FT /transl_table=11 FT /gene="nemA" FT /locus_tag="BB1765" FT /product="N-ethylmaleimide reductase" FT /EC_number="1.-.-.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1940" FT /protein_id="CAE32262.1" FT /translation="MSTLFQPLNAGKLRLANRIVMAPLTRNRSPNAVPPPLTATYYAQR FT ASAGLIITEATAISHQGQGYADVPGLYAPEQLAGWRRVTDAVHAAGGTIVVQLWHVGRI FT SHTTLQPGQGAPVAPSAIRAQARTYLVDAQGKGQFADTSEPRALALDELPGIVEDYRRA FT ARAAIDHGFDGVELHAANGYLLDQFLRSGSNHRDDAYGGSIENRARLLLQALDAVCAEV FT GADRVGIRLSPVTPANDAHDDQPQPLFEYVLRELARRGLAYVHVIEGATGGDRAYQQGP FT APFDYAALKAAYRAAGGAGAWMVNNGYDASLAEQKLSSGQADLVAFGKPFIANPDLVAR FT LRQGAALNEGDRDTFYGGGERGYTDYPALA" FT misc_feature 1850794..1851831 FT /note="HMMPfam hit to PF00724, DE NADH:flavin FT oxidoreductase / NADH oxidase family, score 4.9e-78" FT CDS complement(1851905..1852555) FT /transl_table=11 FT /locus_tag="BB1766" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1941" FT /protein_id="CAE32263.1" FT /translation="MKALIIDISASPLREYVHQHGVADGLLYGCWYRIVRPLLVILTWV FT AFSLYIHHSLVTVGGTAAQIAELLVYITVVATMAAALTAWMIVCRFHGWIRARDNEEVG FT VGLDPEYALPPRWPLPEGANRLLVDHDEAGAIVQVSAWYVPAAIEPVVAAAMAPVVAPA FT VMPDAAPLSEPAPLAVALPDEADEPAAWSGPPMQRQPDGRIEPSLHDGRALTL" FT misc_feature complement(join(1852292..1852360,1852388..1852456)) FT /note="2 probable transmembrane helices predicted for FT BB1766 by TMHMM2.0 at aa 34-56 and 66-88" FT CDS complement(1852536..1853795) FT /transl_table=11 FT /gene="hmsR" FT /locus_tag="BB1767" FT /product="putative glycosyl transferase component of hemin FT storage system" FT /note="ortholog of Bordetella pertussis (BX470248) BP1942" FT /protein_id="CAE32264.1" FT /translation="MNDSVKSVLSSFVFYYPFFMSYFWIVGGLLHFFLFEQGRKHRATL FT LPRVPRVAIVVPCYNEGENVAEVIAHLDRMHYPNYRIIAVNDGSRDNTGALLNELAEQY FT PRLLVVHQSRNEGKAIGLNTAAQLSDAEFLLCIDGDSLPHPDSITYMLTHFLHAGHVGA FT VTGNPRIRNRSTVLGRMQVGEFSSIVGLIKRTQQLYGKLMTVSGVMTMFRKQALHQVGY FT WSPDMQTEDIDISWKLQLAGWTLRYEPRALTWILMPETFRGLFKQRYRWARGGIETALK FT YAPRMLNPRQILMWPIFLEFSLSVLWAYAMLFLICMAVLGQFVALPPAWQFEIFPRWHG FT TLLFLTCLAQLFAGCIVDRAYDYRIFRYFADAVWYPIAFWIIGMITTVFALPRVLFRRA FT QSRARWVSPDRGIKHESVDH" FT misc_feature complement(join(1852614..1852682,1852725..1852784, FT 1852818..1852886,1853694..1853762)) FT /note="4 probable transmembrane helices predicted for FT BB1767 by TMHMM2.0 at aa 12-34, 304-326, 338-357 and FT 372-394" FT misc_feature complement(1853133..1853639) FT /note="HMMPfam hit to PF00535, DE Glycosyl transferase, FT score 3.4e-32" FT CDS complement(1853799..1855904) FT /transl_table=11 FT /gene="hmsF" FT /locus_tag="BB1768" FT /product="putative hemin storage protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1943" FT /protein_id="CAE32265.1" FT /translation="MTAMHWTLLKWFACCALGLLMLPARAYKVDMLPPPDPDDGLTFRV FT LCMHDVRDNLRASFADMPDQFAIETRTLTDLFEWIRVKGFNPISMQQIIDSRAGVRPLP FT PRPILLTFDDGYASTYTKVFPLLKKFNYPAVVAVVTSWTDAPAGTKIRLSPKIEVPHDF FT FMTWAQLREMAQSGLVELASHSHNLHRGVLANPQGNEQPAASSRQYLPASGRYENDAEY FT RARVRQDLKTSADLIREHTGVTIRSIVWPYGAHNRDTDQVAAEVGLNIGLTLQPGPNTP FT DVALTQIRRSLVDYEVNVATVARAMREPVSYHGQVRPIERIVQVDLDYIYDPDPEQQNR FT NLGQLIDRMKDLAPSAVYLQAFADPKGDGDITEVYFPNRHLPMRADLFNRVAWQLKTRA FT GVMVYAWLPVLTFSVPPGNPAYGKVVQSTTRKPGERGLGSPTRLSPFHPDAHRVISEIY FT EDLAKAAHFDGLLFHDDAVLDDTEDSSPEALATYQGWGLPPDIAAIRADPKLAQQWSKG FT KIRYLIDFTMHLRHIVSGYQNDRDMVVARNLYAQPVLDPVSEAWYGQSLPEFLKSYDFV FT ALMAMPNMEGAARPEQWMRQLVAAVARQKGLDRTIFELQARDWRVGKPIDTEILRRQMV FT QLRSLGAINYGYYPDDFIANHPDAEALRDVMSLKSTLEKRRLTKAQELSRQTTLYGSAS FT QAEPTQR" FT misc_feature complement(1855827..1855904) FT /note="Signal peptide predicted for BB1768 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.808 between residues 26 and 27" FT CDS complement(1855910..1857895) FT /transl_table=11 FT /gene="hmsH" FT /locus_tag="BB1769" FT /product="putative hemin storage protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1944" FT /protein_id="CAE32266.1" FT /translation="MNNDQTRRTRPASVRGLRRTRLLVAGLAFVGAAAAAAPSVRDQVQ FT EASRSGAANLALDLATEHRALFTPLEYAQLQHAAIAQRLRWSRAETWNLTGPERFATLD FT AALADGWQLLDSLPLAPEYGSLRTAVISDMIYGLGLRGRYADAIKLYEGLRATNTPVHP FT YVLVSAGNAYAYEERYDEAIACYEEALAKAGPGDIDRVPTQESLFFAYMDRGRYEDAEQ FT LLQRIEKTSPQYVENAPVAERPNEDYATAQRLRAQYLMYSGETEAGTLAIDALQHDAPF FT SSGLRNAAASARLGDARPREAKAAFTTALAERPDDIQAMTGLARASMALREYPEAEAIV FT TTLSERFPESSSVRNLQRDYEVYQSPLLTMDFGGDIGHGGDNSSNDNSTIANREWSLNT FT MLYTSPISHNYRLFFHQFTGYADLGDGHKSRVRNGAGLEYRRGSIEASTELHQSTGPSG FT RFGASANVAWLPSDGWRLAANFDSDSNDLPWKAYRAGIHGWSSGVSARYQPTERTYYDV FT AYQLQRYSDSNTRQTIGATWFQNLWTVPRHSVSTWTSVAYSNNSKTDTEYFSPDHDLTA FT QVTAMYEWRPWRDGQYAFRQRVYATGGVYNQAEHGNSALWQLRLEQVWDLPRQTSITYG FT VGYGRHSYDGDPENRTLFYLTLNIPF" FT misc_feature complement(1857788..1857895) FT /note="Signal peptide predicted for BB1769 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.692 between residues 36 and 37" FT CDS 1858104..1858340 FT /transl_table=11 FT /locus_tag="BB1770" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1945" FT /protein_id="CAE32267.1" FT /translation="MRSAAKWWGPAATWTLAALLVLLVGHGVVPEAARVSDAPLLHAMA FT GHAYLLNWAAGLMALIGWGDSLVLYRRTRRRAV" FT misc_feature join(1858122..1858190,1858248..1858316) FT /note="2 probable transmembrane helices predicted for FT BB1770 by TMHMM2.0 at aa 7-29 and 49-71" FT tRNA 1858392..1858468 FT /note="tRNA Arg anticodon ACG, Cove score 86.25" FT CDS 1858687..1859172 FT /transl_table=11 FT /locus_tag="BB1771" FT /product="MarR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1946" FT /protein_id="CAE32268.1" FT /translation="MPASQDKLDVPPGPYHFSEQVGHLLRRAYQRHVAIFQQTIPDSKL FT TAAQFVVLCALRDQGACSLVDVVKATAIDQATVRGVIERLKARKLLAVSHDPADRRKVL FT VTLTPDGRALVEEMVPFAEQITQSTFGGLNPAERVAIVYLLRKMSDADDLVGRQSDS" FT misc_feature 1858819..1859130 FT /note="HMMPfam hit to PF01047, DE MarR family, score FT 6.5e-17" FT CDS 1859488..1860696 FT /transl_table=11 FT /locus_tag="BB1772" FT /product="branched-chain amino acid-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1948" FT /protein_id="CAE32269.1" FT /translation="MNGRNRYARLLGATCLTLLGASAWAQDTIKIGEINSYKSQPAFLE FT PYKKGMQLALDEVNDAGGIAGKKLELVIRDDNANPGEAVRAAEELISRERVDMLTGSFL FT SHIGLALTDFAKQKKVFFLASEPLTDKIVWQDGNRYTYRLRTSTYMQVAMLVPEALKLK FT KKRWAIVYPNYEYGQSAVATFKTLMKAGQPDIEFVSEQAAPLGKVDAGSVVQALADSKP FT DAIFNVLFAADVTKFVREGTTRGLFKERPVVSVLTGEPEYLDTFRDETPAGWIVTGYPW FT QFIETPEHQAFLKAYQAKFKDYPRLGSVVGYSAIKSLAEGIKRAGGKTDTESMIKAFAG FT LKLTIPFGPIEYRTLDNQSTMGAYVGKLASRDGKGVMVDFRYVDGAAAQPSDEEVRKLR FT KAD" FT misc_feature 1859488..1859562 FT /note="Signal peptide predicted for BB1772 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 25 and 26" FT CDS 1860788..1862737 FT /transl_table=11 FT /locus_tag="BB1773" FT /product="putative permease component of branched-chain FT amino acid transport system" FT /note="ortholog of Bordetella pertussis (BX470248) BP1949" FT /protein_id="CAE32270.1" FT /translation="MDLTGFLAQLLNGLAEASSLFLVAAGLSLIFGVTRIVNFAHGSLY FT MLGVYVAYSIVERVGGTALGFWFGLVAASLAVGVVGAAIEVVLLRRIYRAPELFQLLAT FT FALVLVINDAALWIWGAEDLLGRRAPGLTGAVDLLGRQYPVYNLVLIVIGPVVLGLLWL FT LLTRTRWGTLVRAATQDREMLGALGVNQAWLFTGVFALGAMLAGLGGALQLPREPASLS FT LDLRTIGDAFVIVVVGGMGSIPGAYVAALIIAEIKALCIGLGTVTLLGFSVSFSKLTLV FT VEFAFMALVLVFRPWGLFGRPQGASRNSAPIEAPLRPAAPRLRILWGVLLAALATLPLL FT AQWLPYAVVLTQDILIAALFAVSLHFMMGPGGMHSFGHAAYFGLGAYGAALLLKAASLP FT MEAALAFAPLVAALGALIFGWFCVRLSGVYLAMLTLAFSQIVWSVVFQWDDFTGGSNGM FT IGVWPAEWLSGTAYYYLALAVVAAAVLGLRRVLFSPFGYAMRAGRDSSLRADAIGIDVK FT RVQWAAFVVAGAFGGLAGALYAFSKGSISPDTMAVSKSVDGLVMVLLGGIQTLIGPVVG FT ATAFNVLQDYIMRATEYWRALFGGVILLLVLVFPQGIAGFCRQAGQWWSARAGKDRPPR FT KGGAFIGGPREKQA" FT misc_feature 1860803..1861696 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 1.5e-19" FT misc_feature join(1860815..1860883,1860902..1860955,1860983..1861051, FT 1861088..1861147,1861214..1861282,1861343..1861411, FT 1861478..1861546,1861565..1861633,1861760..1861828, FT 1861847..1861915,1861991..1862050,1862063..1862131, FT 1862195..1862263,1862342..1862410,1862468..1862536, FT 1862573..1862632) FT /note="16 probable transmembrane helices predicted for FT BB1773 by TMHMM2.0 at aa 10-32, 39-56, 66-88, 101-120, FT 143-165, 186-208, 231-253, 260-282, 325-347, 354-376, FT 402-421, 426-448, 470-492, 519-541, 561-583 and 596-615" FT misc_feature 1861802..1862641 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 3.8e-12" FT CDS 1862734..1863510 FT /transl_table=11 FT /locus_tag="BB1774" FT /product="putative ATP-binding component of branched-chain FT amino acid ABC transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1950" FT /protein_id="CAE32271.1" FT /translation="MSLLQVRNLSKAFGGVRAVDDISFDLAAGELLALIGPNGAGKSTT FT FNMVGGQLPATTGSVRLDGHELVGMRPRDIWRLGVGRTFQIAATFASLTVVENVQMALL FT SHHRRIFSFGSLAARQYREPALALLEQVGMRDQAERPCSELAYGDVKRVELAMGLANDP FT KLLLMDEPTAGMAPQERNALMALTKRLVVDRGMAVLFTEHSMDVVFAYADRMIVLARGR FT LIAEGRAQEIRNHPKVQEVYFGTGKTFEKHSAGAAA" FT misc_feature 1862818..1863396 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.4e-52" FT misc_feature 1862839..1862862 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1863507..1864277 FT /transl_table=11 FT /locus_tag="BB1775" FT /product="putative ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1951" FT /protein_id="CAE32272.1" FT /translation="MSTVAEPTRAAAATQAPALLRVAGLNAWYGAAHILFDVDLEVRRG FT EVVALMGRNGAGKSTTFKAVMGLLAKRRGAVEFMGRDIAGLQPFEIARLGLGFVPEDRR FT VFTDLTVTENLEVGRQPARRWPDGSAAPNWQPGALYELFPNLGAMQDRPGGQMSGGEQQ FT MLTVARTLMGNPFLVLLDEPSEGVAPVIVEQMAGMILALKAQGASILLSEQNVHFAELV FT SDRVYVLEKGQIRYSGSMAELADNEEVRRAYLTV" FT misc_feature 1863639..1864202 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.8e-40" FT misc_feature 1863660..1863683 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1863975..1864019 FT /note="PS00211 ABC transporters family signature." FT CDS complement(1864431..1867271) FT /transl_table=11 FT /locus_tag="BB1776" FT /product="putative cytochrome" FT /note="ortholog of Bordetella pertussis (BX470248) BP1952" FT /protein_id="CAE32273.1" FT /translation="MSRAGPPDTAPMAAMPAGSADLAPPAAGVLAGLVLRPPRASWNGE FT RYTGPRAAHVDDNALQGLPGIVRVLVARDFVGIVATRPELAQQAAARLPVQWRAAPPGA FT DAHPLWQHGPADADAPMALEQRYRWPAADSHGMSTWALAWWREGALTVWTAAAAPALRR FT ELAALLDLPPDAVRVLAYGVPPGQAADLAALDTAADAALLSRAVGQPVRVAGSPIAWPA FT PASGAIRLGADFDAQGGVAALRIRHDGAGLARPSLARLLAGGAGAAPADAPPYRFGAVR FT LAADSQGTLPPGAARLPGQRAAQVFALESFLDEAAIRAGVDPVEYRLRHLDDARGAALI FT RQVAQQAGWQASGRGGRGFAYASVIDDSVDPPLRSWSAWVADVSVDPDSGSVALTRVVV FT GHDLEAAAAPGQDAPRIEQHLRDTAGRLLGPPAAYDDWSIPAAPIAGQLPTPEVVRPAR FT ALATPAALAWSDTASLPAAAAVANAIFDATGIRLREPPFNGAQARRALSAAAPARRGNR FT GAYAWLGGIAAAAAGLVVAAWPWRPAIAPIAGPEPGLYSAAAIERGRLVAAAGDCVVCH FT TAPGGAPNAGGLALDTPFGAIYTTNITPDVATGIGQWSYAAFERAMRQGIHRDGRQLYP FT AFPYTSFAKLSEADMQALYAYLMAQPPVAATPPPTRLPFPYNLRPLMAGWNALFHDARP FT YQPDPERSTLWNRGAYLVQGAGHCGACHTPRNSLGAERGGERHFLGGGVAEGWDAPALN FT ALSRAPVPWTEQDLYAYLRTGFSARHGVAAGPMAPVVQSMAQLPDADVRAMAHYLSSLG FT PAADSAGVEATVQALERASEPGARLLPPNGERLFQGACAVCHETRHTAPQFGVRPSLAL FT NTNLHSARPDNLIQVILHGIVEPANGQLGYMPAFGASLDAGQIAELVQYMRARFAPGEP FT AWQDVAQRVRKLSRQE" FT misc_feature complement(1864497..1864748) FT /note="HMMPfam hit to PF00034, DE Cytochrome c, score 0.22" FT misc_feature complement(1864707..1864724) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(1865103..1865120) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(1865289..1865600) FT /note="HMMPfam hit to PF00034, DE Cytochrome c, score FT 0.0036" FT misc_feature complement(1865541..1865558) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS complement(1867268..1867756) FT /transl_table=11 FT /locus_tag="BB1777" FT /product="probable oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1953" FT /protein_id="CAE32274.1" FT /translation="MLAATRDFTLEVNASRHTVTADPDTPLLYILRNDLCLNGPKFGCG FT LGECGACAVLIDGVAARACTIPVRGAAGHAITTLEGLGTPQAPGPVQQAFIDEQAAQCG FT YCLNGMIIATQALLLRNAAPTDEDIRRELQYHLCRCGTHIEIMAAVRRAARLWAARQA" FT misc_feature complement(1867301..1867525) FT /note="HMMPfam hit to PF01799, DE [2Fe-2S] binding domain, FT score 9e-23" FT misc_feature complement(1867547..1867729) FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 7.6e-07" FT misc_feature complement(1867601..1867627) FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT CDS complement(1867866..1869017) FT /transl_table=11 FT /locus_tag="BB1778" FT /product="putative monooxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1954" FT /protein_id="CAE32275.1" FT /translation="MQGKPRIAVIGAGLGGTAGAALMARAGFNVRLYEQAPAFSRLGAG FT IHLGPNVMKIMRRIGIEDELNRQGSHPDYWYSRDWQSGAELARIPLGDYAVSHYGATYL FT TVHRGDFHALMTAALPAGLLQFNKRLTRVDEDDDVVRLHFADGSVEEAEIVIGADGVNS FT RLREHLLGAELPKYTGYVAHRAVFPTPLDSGSLPFDMCVKWWSDDRHMMVYFVTGKRDE FT IYYVTGVPEQQWDMGKSWVPSSKAEMRAAFAGWHPTVQALIEATPEVSKWPLLERDPLP FT LWSRGRIVLLGDACHPMKPHMAQGAAMAIEDAAMLTRIFEQTGLQDHAAAFRLYEDNRA FT ERASRVQRVSHDNTWLRTNENPDWCFGYDVYAEPLVEGRRAAA" FT misc_feature complement(1867965..1868567) FT /note="HMMPfam hit to PF01360, DE Monooxygenase, score FT 5.8e-33" FT misc_feature complement(1868949..1869017) FT /note="Signal peptide predicted for BB1778 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.973) with cleavage site FT probability 0.516 between residues 23 and 24" FT CDS 1869318..1870070 FT /transl_table=11 FT /gene="maiA" FT /locus_tag="BB1779" FT /product="maleate cis-trans isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1955" FT /protein_id="CAE32276.1" FT /translation="MQKTYRIGQIVPSSNTTMETEIPAMLLARQQIRGERFTFHSSRMR FT MKKVVKEELAAMDAESDRCAVELSDARVDVLGYACLVAIMAMGRGYHRQSQARLTAHTA FT ANGGEAPVITSAGALVDGLKVMGAKKIAVVAPYMKPLTELVVDYIGNEGYEVVDYRALE FT IADNLEVGRHDAGRLPEIVAGLDYREADVIVLSACVQMPSLGAIAKVEAQTGKPVVTAA FT VATTYAMLKALGLEAVVPGAGALLSGAY" FT CDS 1870090..1870911 FT /transl_table=11 FT /locus_tag="BB1780" FT /product="probable alpha/beta hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1956" FT /protein_id="CAE32277.1" FT /translation="MSNFRYGGNVQANGIRQHYLRYGGERAGRDPVIIVPGITSPAVTW FT GFVGERFGEQFDTYILDVRGRGLSQSGPQLDYGLDAQAEDLLAFARALGLSRYSVVGHS FT MGARIGIRAARTGEAGLARLAMVDPPVSGPGRRAYPSKLPWYVDSMAQARQGMTGEQMK FT AYCPSWTAEQLQLRAEWLHTCEERAVIASFEGFHEDDVHADLPRVRAARLLMTAERGEV FT VLDADVAEIEALAPGTAHVRVAGAGHMIPWDNEEGFYAAFGDFLGARLRAG" FT misc_feature 1870255..1870887 FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 2e-09" FT CDS 1870939..1871970 FT /transl_table=11 FT /locus_tag="BB1781" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1957" FT /protein_id="CAE32278.1" FT /translation="MPVSDYEMIRAWTQVLSLSRLQAGQTVTVLTSAATHPQTLGTALV FT AAQSLGAVVNRLDLPPVNGEKALSRDALAYLGTTPLTGNKAAIAMLKASDLVLDLMTLL FT FSPEQHEILQGGTKILLAVEPPEVLARLVPTEGDRQRVKAAAERIAGAREMTVESEAGT FT RLRCGLGEFPAISEYGYVDEPGRWDHWPSGFALTWPDEGSANGTIVIDRGDILLPQKSY FT VSEPIVLTVENGYATRIEGGLDAELLREYVATFKDPQAYAISHIGWGLQPRASWTTLGL FT YDREATIGMDARAYEGNFLFSLGPNNEAGGSRTTACHIDIPLRRCTVRLDGREVVREGK FT VLD" FT CDS 1871986..1872603 FT /transl_table=11 FT /locus_tag="BB1782" FT /product="putative isochorismatase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1958" FT /protein_id="CAE32279.1" FT /translation="MGNDLGSYERQGFGAALPLKAPYGLLIVDFVNGFADPAQFGGGNI FT AAAIETTRTVLAAARERGWAVAHSRIVYADDDADGNIFSIKVPGMLTLKEHAPASAIVP FT QLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMSAGF FT RPLVLSDCVGDRALGPHEANLFDMRQKYAAVMTHDEALAKTK" FT misc_feature 1872037..1872591 FT /note="HMMPfam hit to PF00857, DE Isochorismatase family, FT score 1.4e-07" FT misc_feature 1872403..1872435 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1872600..1874924 FT /transl_table=11 FT /locus_tag="BB1783" FT /product="probable aldehyde dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1960" FT /protein_id="CAE32280.1" FT /translation="MTHPGACPRRGTGTCRILLPAGTDAPSMRTVMQTPRSQREALLRA FT ADALLVTRAPTAGARPAPGQPGAASDYVPATPDVFIAVRADGRVQAFNGHVDLGTGVRT FT ALAQIVAEELDVAFERVEMVLGHTEAAPNQGPTIASATIQITAVPLRKAAAQARAWLLA FT RAADALGMPADMLRVDDGVVRAGNGRATDYWTLLAGGGATLALADAVALKPSAQYRVVG FT RAVPRVDIPAKATGQLTYVHDMRLPGMLHGRVVRPPYPGRDVGGFVGHSLRDVDRASIA FT HLPGIVDVVVLGDFVGVVAEREEQAIKAARQLKVHWAAPPPAPDLSDLARALRDQPATP FT RELVAQGDVDAALAHPDALRCTYVWPYQMHGSIGPSCGLADYRPDGLTVWSGTQNPHML FT RIDLDRLLGLGESRIEIVRMEAAGCYGRNCADDVCADAALLSRGVGRPVRVQLSREQEH FT AWEPKGAAQLMEVRGAVDAQGGLAAYDFATRYPSNDAPLLALLLTGTLAAGPRTLQMGD FT RTAVPPYRYDRLRVVCNDTAAIMRAAWLRGVSALPNSFAHDCFIDELAERAQADPLAFR FT LRHLDDPRAIDLLREVASRAGWREGRRGSRGQADARHRLRGRGLAYARYVHSKFPGFGA FT AWAAWVVDLAVDARSGAITVERVVVGQDTGMTVNPDGVRHQLHGNVIQSLSRALKEQVS FT FNQAGVSSMEWGAYPILGFTEVPPIEVVLMPRQDQPPMGAGESASVPGAAALANALFDA FT TGRRFREPPFTPERVRAALAG" FT misc_feature 1873302..1873568 FT /note="HMMPfam hit to PF01315, DE Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain, score FT 0.00059" FT misc_feature 1873578..1874750 FT /note="HMMPfam hit to PF02738, DE Aldehyde oxidase and FT xanthine dehydrogenase, molybdopterin binding domain, score FT 3e-07" FT misc_feature 1874451..1874474 FT /note="PS00030 Eukaryotic putative RNA-binding region RNP-1 FT signature." FT CDS 1874975..1876381 FT /transl_table=11 FT /locus_tag="BB1784" FT /product="putative flavocytochrome" FT /note="ortholog of Bordetella pertussis (BX470248) BP1961" FT /protein_id="CAE32281.1" FT /translation="MHNGPGATGIFRKRHRARSGDAMRRLRTIFILLVAALSVLWLSQN FT PPGAWGEGFWAMRKPLIYYTGILALGMMSLGVILAARPARFEGALGGLDKFYRLHKWLG FT LGGVALALTHWLLKIVPPWMAAQGWTVRPPRVPAPAGQAALYDPFQAWHGVAKSLGEWG FT LYALLLLAALALYKRFPYRHFFRTHRLMPALYLVFVFHAVVLMAPAYWRGPIGPVMAVV FT MAAGGAGALLSLLGLIGRPRQAAGRIARLERFADNAVMQVDVQLETRWPGHRAGQFAFV FT TFDRAEGAHPFTISSAWRDDGLLRFSIKGLGDYTRSLPARLRVGDGVTVEGPYGRFDFR FT ANGRPQILVAGGIGITPFLARLQDMAAARSDGAPAHEVDLVYSTNAPDPDFIGELRALA FT ERARVGLHVLVTQRDGKLSAERLVDMLPRAVQSEVWFCGPAGFGQALREGLAARGMPPA FT CFHQELFEMR" FT misc_feature join(1875041..1875100,1875158..1875217,1875278..1875346, FT 1875449..1875502,1875539..1875607,1875617..1875685) FT /note="6 probable transmembrane helices predicted for FT BB1784 by TMHMM2.0 at aa 23-42, 62-81, 102-124, 159-176, FT 189-211 and 215-237" FT misc_feature 1875707..1875991 FT /note="HMMPfam hit to PF00970, DE Oxidoreductase FT FAD-binding domain, score 0.00023" FT misc_feature 1876001..1876318 FT /note="HMMPfam hit to PF00175, DE Oxidoreductase FT NAD-binding domain, score 0.0028" FT CDS complement(1876392..1878500) FT /transl_table=11 FT /gene="bfrI" FT /locus_tag="BB1785" FT /product="putative ferrisiderophore receptor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1962" FT /protein_id="CAE32282.1" FT /translation="MDNRTPQRRRPAAPRLLHLSLAASLAAGAAQAQTATEATTLPAVQ FT VTGRGETATGPVDGYAATRSATATKTDTPLSETPQAVTVIPREQIIDQGAQNVQDTMNY FT AAGVRPNAYGVDNRGDYVRVRGVEPVQYLDGLKQFFNYNNPRTEVYGLERVEVLRGPAS FT MLYGQGSTGGVVNLVSKRPQPEAMREIGVTVGNHNRKEIQADLTGPLTEDGTWLYRVVA FT LGRDSDTQVQYTKDDRMMVAPSLTWQPSAATSLTLQAYWQKDKSGTTQAFLPWSGTVSG FT NPNGRIPTRRFTSEPGFDRYDTEQFSVGWQFEHKFNDNWKVRQNLRYTSSKVDYSTLYP FT AVYGNPDNPFIDADQRVVNRYLYIKNPRMRSLLADQNLEGKVNWGRAEHTLLMGVDYSR FT YRETGETGSGFGAPLDLYQPVYGTLPDYAMSDVPKNKQQQIGVYLQDQIKFDRNWIVVA FT GLRHDRVANSVEGADKETDNATTKRLGLMYAADNGWSPYLSYSESFTPIAGTDNSGNRW FT VPMRGKQWEAGLKYMPQDTGYEATLAAYDLRERNRQTNDPSDPTNQVQTGKTRTRGIEL FT EFRGRVTPQMDVIANYNYTDIDPQLEGLPKHTFSLWSKYRFSVGDVHGFAAGAGVRYLN FT AFRDGSAPETGSVALFDAMLSYDTGSWRYALNVANIADKTYEVVCLRRGDCFYGQRRTV FT TLSAMYRF" FT misc_feature complement(1876398..1876706) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00593, DE TonB dependent receptor FT C-terminal region, score 7.9e-13" FT misc_feature complement(1878405..1878500) FT /note="Signal peptide predicted for BB1785 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.946 between residues 32 and 33" FT CDS complement(1878627..1879154) FT /transl_table=11 FT /locus_tag="BB1786" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1963" FT /protein_id="CAE32283.1" FT /translation="MSRPAACLQDMLMYRLYQAWSQSNPVFVRLCEGRYGITRREWRIL FT AAAVEHGRMTSAALAAAASLDLVRTSRTVGALCRKGWLQREHGLSDRRVVHIEATEAGL FT AHYQAVLPAVAQLNDLLAESLDPAEIDQLRDLLARIEARGRAMAAGNLIAEKADRRAGG FT TRRPRETGPHPR" FT misc_feature complement(1878735..1879046) FT /note="HMMPfam hit to PF01047, DE MarR family, score FT 6.1e-19" FT CDS 1879248..1880213 FT /transl_table=11 FT /locus_tag="BB1787" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1965" FT /protein_id="CAE32284.1" FT /translation="MFKSMLAAVLALGMSGPAAQAAAPLDGPLTIVVGYAPGGSSDRIA FT RLVAERLKDRVGVPVIVENKTGAGGRIAAQALRQASAQQNVLMLANPAVMVVAPLVYAQ FT PGYDAQRDFQPLSLASRYKFALAVPAGSPLRTLADLRQWIAAHPKQLTVGVPATGSLPH FT FFALMLGREVGEDVEVVGYRGSGPLITELIGGILGQGIDTLDTLLPQHQAGKLRILATS FT GQTRDAQLPDVPTFREAGVDLAADGWNAFFAPAAMPADKVERLGRDIAAVMSEPAMQQA FT VRAVNLEPVAQDAAQTAASLQAYRDQWEPVVRQSGFIATQ" FT misc_feature 1879248..1879310 FT /note="Signal peptide predicted for BB1787 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.833 between residues 21 and 22" FT misc_feature 1879377..1880198 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.7e-42" FT CDS 1880230..1881795 FT /transl_table=11 FT /locus_tag="BB1788" FT /product="putative sulfatase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1966" FT /protein_id="CAE32285.1" FT /translation="MTQVQNVLFIMADQLRADHLGCYGHPYLRTASLDALARRGVRFER FT AFVNSGVCGPSRMSYYTGRYPSSHGATWNRVPLSVGEVTLGEYLAGHGLDLALAGKTHV FT LPDAAGMQRLALDGGSELGLLLSRGGFRELDRYDGHHEPGAESGYPAFLRRHGYDSPDP FT WSDYVISAIDAGGQVVSGWHMRNTYLPSRVREAHSETAYMTGQALDFMRQRGGQPWVLH FT LSYVKPHWPYMAPAPYHSMYRPEQCLPVLRTAAEREDAHPVVQAYRQHEESLSFAR