ID BX470249; SV 1; circular; genomic DNA; CON; PRO; 4773551 BP. XX AC BX470249; XX PR Project:PRJNA25; XX DT 09-AUG-2003 (Rel. 76, Created) DT 13-MAY-2009 (Rel. 100, Last updated, Version 7) XX DE Bordetella parapertussis strain 12822, complete genome XX KW . XX OS Bordetella parapertussis 12822 OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-4773551 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the INSDC. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat Genet 35(1):0-0(2003). XX DR ENA; ERS000053. DR GR; BX470249_GR. XX CO join(BX640423.1:1..348251,BX640424.1:51..349146,BX640425.1:51..348257, CO BX640426.1:51..348866,BX640427.1:51..348997,BX640428.1:51..348525, CO BX640429.1:51..344321,BX640430.1:51..348014,BX640431.1:51..347894, CO BX640432.1:51..346301,BX640433.1:51..349305,BX640434.1:51..344805, CO BX640435.1:51..346259,BX640436.1:51..255260) XX FH Key Location/Qualifiers FH FT source 1..4773551 FT /organism="Bordetella parapertussis 12822" FT /strain="12822" FT /mol_type="genomic DNA" FT /db_xref="taxon:257311" FT CDS 1..1920 FT /transl_table=11 FT /gene="gidA" FT /locus_tag="BPP0001" FT /product="glucose inhibited division protein A" FT /note="ortholog of Bordetella pertussis (BX470248) BP0001" FT /note="Similar to Escherichia coli glucose inhibited FT division protein A GidA or B3741 SWALL:GIDA_ECOLI FT (SWALL:P17112) (629 aa) fasta scores: E(): 6.8e-164, 68.52% FT id in 629 aa" FT /protein_id="CAE39742.1" FT /translation="MDFPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQM FT SCNPSIGGIGKGHLVKEVDALGGAMAIATDEAGIQFRILNSSKGPAVRATRVQADRVLY FT RNAMRARLENQPNLWLFQQAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLI FT HVGLQNYSGGRAGDPPANSLGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDL FT DPVPVFSFLGKASMHPRQLPCWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSI FT EDKIHRFADKASHQVFLEPEGLNTHEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRP FT GYAIEYDYFDPRALKSTLETKAISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGK FT EPWVPRRDEAYLGVLVDDLVTRGVTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGL FT VDDVRWDAFSRKRDAVAQEVERLKSTWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRP FT NVSYEALMQARTDEGELLAGPGVLEDDVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQ FT PIPADIDYDAVTSLSFEVRQKLKTHRPETIGQAARVSGVTPAAISLLLIHLKRLHYGSR FT KQAA" FT misc_feature 19..1893 FT /note="HMMPfam hit to PF01134, Glucose inhibited division FT protein A, score 0" FT misc_feature 820..864 FT /note="PS01280 Glucose inhibited division protein A family FT signature 1." FT CDS 1917..2609 FT /transl_table=11 FT /gene="gidB" FT /locus_tag="BPP0002" FT /product="glucose inhibited division protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP0002" FT /note="Similar to Pseudomonas putida glucose inhibited FT division protein B GidB SWALL:GIDB_PSEPU (SWALL:P25757) FT (216 aa) fasta scores: E(): 1.5e-24, 42.59% id in 216 aa, FT and to Escherichia coli glucose inhibited division protein FT B GidB or B3740 or Z5240 or Ecs4682 SWALL:GIDB_ECOLI FT (SWALL:P17113) (207 aa) fasta scores: E(): 1.6e-12, 39% id FT in 200 aa" FT /protein_id="CAE39743.1" FT /translation="MSAVPDIPGGPAQRLAQACDALRLPADAGQQQKLLRYIEQMQRWN FT RTYNLTAIRDPGQMLVQHLFDSLSVVAPLERGLPAAGSGARVKLFDVGSGGGLPGVVLA FT IMRAHWDVTCVDAVEKKTAFVRQMAGALGLPNLQAAHTRIEQLEPAQCDVVISRAFASL FT QDFAKLAGRHVREGGTLVAMKGKVPDDEIQALQQHGHWTVERIEPLVVPALDAQRCLIW FT MRRSQGNI" FT misc_feature 1917..2135 FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT misc_feature 2004..2579 FT /note="HMMPfam hit to PF02527, Glucose inhibited division FT protein, score 1.7e-50" FT CDS 2606..3403 FT /transl_table=11 FT /gene="parA" FT /gene_synonym="soj" FT /locus_tag="BPP0003" FT /product="ParA family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0003" FT /note="Similar to Caulobacter crescentus chromosome FT partitioning protein ParA or Cc3753 SWALL:PARA_CAUCR FT (SWALL:O05189) (267 aa) fasta scores: E(): 9.6e-46, 49.41% FT id in 255 aa, and to Bacillus subtilis sporulation FT initiation inhibitor protein Soj SWALL:SOJ_BACSU FT (SWALL:P37522) (253 aa) fasta scores: E(): 1.3e-43, 48.98% FT id in 247 aa" FT /protein_id="CAE39744.1" FT /translation="MKNIPPSKSARVFCIANQKGGVGKTTTAINLAAGLATHKQRVLLV FT DLDPQGNATMGSGIDKSTLESNLYQVLIGEAGIEQTRVRSESGGYDVLPANRELSGAEI FT DLVQMDERERQLKAAIDKIAGEYDFVLIDCPPTLSLLTLNGLAAAHGVIIPMQCEYFAL FT EGLSDLVNTIKRVHRNINNELRVIGLLRVMFDPRMTLQQQVSAQLESHFGDKVFTTVVP FT RNVRLAEAPSYGMPGVVYDRASRGAQAYIAFGAEMIERVKELD" FT misc_feature 2879..3214 FT /note="HMMPfam hit to PF00991, ParA family ATPase, score FT 1.5e-33" FT CDS 3410..4216 FT /transl_table=11 FT /locus_tag="BPP0004" FT /product="Putative acetyltransferase, GnaT family" FT /note="ortholog of Bordetella pertussis (BX470248) BP0004" FT /note="Similar to Caulobacter crescentus acetyltransferase, FT GnaT family Cc2209 SWALL:Q9A685 (EMBL:AE005892) (207 aa) FT fasta scores: E(): 1.5e-11, 34.63% id in 205 aa, and to FT Rhizobium meliloti putative acetyltransferase protein FT R02624 or Smc02449 SWALL:Q92MJ2 (EMBL:AL591791) (308 aa) FT fasta scores: E(): 5.5e-10, 31.42% id in 245 aa" FT /protein_id="CAE39745.1" FT /translation="MPAVLAVLAAHPAPAAGGELARLEEAALNATTVREQMLYEGWLVR FT WAPSRAKRARCVNVLGLSTRPLDERLAYCTRWYAGHGVPLIVRLTSIGPDFSLDAQLHE FT RGFVAFDRTCVMAAPVVPFTAQAPSGLVFERTTPGRFAQEAGRLRGHDDAATAEHAARL FT QAAPLENLPLLVRDASGECIAAGLAAFDAELVGLFDIVTAPQRRRQGCGAAVLKYLLEQ FT ASHAGARQAYLQVEPQNTAARALYARFGFVDRYTYWYRSMSEATPV" FT misc_feature 3929..4165 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 2.5e-14" FT CDS 4260..5177 FT /transl_table=11 FT /gene="parB" FT /locus_tag="BPP0005" FT /product="probable chromosome partitioning protein ParB" FT /note="ortholog of Bordetella pertussis (BX470248) BP0005" FT /note="Similar to Pseudomonas putida probable chromosome FT partitioning protein ParB SWALL:PARB_PSEPU (SWALL:P31857) FT (290 aa) fasta scores: E(): 1.3e-40, 48.81% id in 295 aa" FT /protein_id="CAE39746.1" FT /translation="MATKKPKGLGRGLDALLGADVPAIDNIGKAPAAAPEGPPATLPVS FT KMRAGKYQPRTRMDEGALNELAESIRTQGIMQPILVRALGADAPGQYEIIAGERRFRAA FT QLAGLKEVPVLVREVADENAAVMALIENIQREDLNPLEEAHGVRRLLDEFGLTHEQAAQ FT AIGRSRSATSNLLRLLNLAAPVQTMLLAGDVDMGHARALLAVDAATQIQLANQVIAKRL FT SVREAEKLVARAQKDVDAAPRKKGNGASRDVTRLEEALSDHLGTRVALKVGAREKGQIV FT IDFHGWEHLNSLLERQGLSGVVDA" FT misc_feature 4377..4658 FT /note="HMMPfam hit to PF02195, ParB-like nuclease domain, FT score 5.9e-34" FT CDS 5170..6171 FT /transl_table=11 FT /gene="ansB" FT /locus_tag="BPP0006" FT /product="L-asparaginase II precursor" FT /EC_number="3.5.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0006" FT /note="Similar to Escherichia coli L-asparaginase II FT precursor AnsB or B2957 SWALL:ASG2_ECOLI (SWALL:P00805) FT (348 aa) fasta scores: E(): 2.7e-44, 45.92% id in 331 aa" FT /protein_id="CAE39747.1" FT /translation="MPEARLPRIAVLATGGTIAGAQTDAASGAYRAGSYGVGQLLAAVP FT QLAGLARIGAEQIANVGSQNMSHAVWRQLALRAAALCDDPATDGIVITHGTDTLEETAY FT FLSLVLPVDKPVVLLGAMRPATALSADGPVNLYNAVALACHPAARGRGPLVVMNEDIHL FT ARHVQKTAASGIAAFASPNAGRAGVMQGGRPVFHARAERQAADALLRPDELPQQAWPRV FT DIVHACVDLDGELIDFMAGRAQGIVLAGVGDGNATDAALQALQRACARGVAVVRASRTG FT SGRVGRNIEIDDDACGFIAAGDLSPQKARVLLTLGLCQTRDTARLQALVDSR" FT misc_feature 5170..5232 FT /note="Signal peptide predicted for BPP0006 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.722) with cleavage site FT probability 0.254 between residues 21 and 22" FT misc_feature 5200..5226 FT /note="PS00144 Asparaginase / glutaminase active site FT signature 1." FT misc_feature 5218..6153 FT /note="HMMPfam hit to PF00710, Asparaginase, score FT 1.2e-100" FT misc_feature 5434..5466 FT /note="PS00917 Asparaginase / glutaminase active site FT signature 2." FT tRNA 6281..6367 FT /note="tRNA Tyr anticodon GTA, Cove score 72.20" FT tRNA 6556..6629 FT /note="tRNA Gly anticodon TCC, Cove score 82.17" FT tRNA 6636..6710 FT /note="tRNA Thr anticodon GGT, Cove score 86.85" FT CDS 6767..7957 FT /transl_table=11 FT /gene="tufA" FT /gene_synonym="tuf" FT /locus_tag="BPP0007" FT /product="elongation factor Tu" FT /note="ortholog of Bordetella pertussis (BX470248) BP0007" FT /note="Similar to Burkholderia cepacia elongation factor Tu FT Tuf SWALL:EFTU_BURCE (SWALL:P33167) (396 aa) fasta scores: FT E(): 8.8e-139, 92.65% id in 395 aa, and to Escherichia coli FT elongation factor Tu TufA or Z4697 or Ecs4190 SWALL:Q8X4S9 FT (EMBL:J01690) (394 aa) fasta scores: E(): 9.7e-123, 81.51% FT id in 395 aa" FT /protein_id="CAE39748.1" FT /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEAR FT GYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDF FT PGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFS FT ISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILL FT RGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDV FT TGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK" FT misc_feature 6794..7384 FT /note="HMMPfam hit to PF00009, Elongation factor Tu GTP FT binding domain, score 8.5e-98" FT misc_feature 6821..6844 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 6917..6964 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 7418..7654 FT /note="HMMPfam hit to PF03144, Elongation factor Tu domain FT 2, score 5e-29" FT misc_feature 7664..7951 FT /note="HMMPfam hit to PF03143, Elongation factor Tu FT C-terminal domain, score 4.5e-60" FT tRNA 8068..8143 FT /note="tRNA Trp anticodon CCA, Cove score 85.26" FT CDS 8196..8576 FT /transl_table=11 FT /gene="secE" FT /gene_synonym="prlG" FT /locus_tag="BPP0008" FT /product="preprotein translocase SecE subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0008" FT /note="Similar to Escherichia coli preprotein translocase FT sece subunit SecE or PrlG or B3981 or Z5554 or Ecs4904 FT SWALL:SECE_ECOLI (SWALL:P16920) (127 aa) fasta scores: E(): FT 6.9e-06, 32% id in 125 aa, and to Vibrio alginolyticus FT preprotein translocase SecE subunit secE SWALL:SECE_VIBAL FT (SWALL:Q9ZNE7) (126 aa) fasta scores: E(): 4.1e-08, 39.84% FT id in 128 aa" FT /protein_id="CAE39749.1" FT /translation="MSNTSIETVTSTADRIKLGLAVLVVIAGIVGFSMLDAQPMVARIG FT VFVGGLVVAALLAWFSEPGRRTLSFAGESYNEVKRVSWPTRKETIQMTGIVFAFVAVMG FT LLMWVLDKGIEWVLYGLLLGWK" FT misc_feature join(8241..8300,8310..8378,8472..8525) FT /note="3 probable transmembrane helices predicted for FT BPP0008 by TMHMM2.0 at aa 16-35, 39-61 and 93-110" FT misc_feature 8391..8561 FT /note="HMMPfam hit to PF00584, SecE/Sec61-gamma subunits of FT protein translocation complex, score 5.5e-16" FT CDS 8586..9119 FT /transl_table=11 FT /gene="nusG" FT /locus_tag="BPP0009" FT /product="transcription antitermination protein NusG" FT /note="ortholog of Bordetella pertussis (BX470248) BP0009" FT /note="Similar to Escherichia coli transcription FT antitermination protein NusG or B3982 or Z5555 or Ecs4905 FT SWALL:NUSG_ECOLI (SWALL:P16921) (181 aa) fasta scores: E(): FT 1.7e-40, 59.77% id in 174 aa, and to Neisseria meningitidis FT transcription antitermination protein NusG or Nma0147 or FT Nmb0126 SWALL:NUSG_NEIMA (SWALL:Q9JRD9) (178 aa) fasta FT scores: E(): 1.8e-45, 66.47% id in 176 aa" FT /protein_id="CAE39750.1" FT /translation="MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEV FT VEVKGGQKSITERRIFPGYVLVEMDLTDETWHLVKNTNRVTGFLGGLGNRPTPISEREV FT EKILNQMEEGVEKPRPKILFEVGEMVRVKEGPLADFNGNVEEVNYEKSKVRVSVTIFGR FT ATPVELDFSQVEKT" FT misc_feature 8589..8720 FT /note="HMMPfam hit to PF02357, Transcription termination FT factor nusG, score 1.3e-13" FT misc_feature 8955..9068 FT /note="HMMPfam hit to PF00467, KOW motif, score 1.2e-07" FT misc_feature 9063..9092 FT /note="PS01014 Transcription termination factor nusG FT signature." FT CDS 9183..9614 FT /transl_table=11 FT /gene="rplK" FT /gene_synonym="relC" FT /locus_tag="BPP0010" FT /product="50S ribosomal protein L11" FT /note="ortholog of Bordetella pertussis (BX470248) BP0010" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L11 RplK or RelC or B3983 SWALL:RL11_ECOLI (SWALL:P02409) FT (141 aa) fasta scores: E(): 3.2e-34, 66.42% id in 140 aa, FT and to Neisseria meningitidis 50S ribosomal protein L11 FT RplK or Nma0146 SWALL:Q9JX02 (EMBL:AL162752) (144 aa) fasta FT scores: E(): 3.7e-45, 86.01% id in 143 aa" FT /protein_id="CAE39751.1" FT /translation="MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAK FT TQGMEPGLPIPVVITAFADKSFTFIMKTPPATVLIKKASGVQKGSAKPHTDKVGTLTRA FT QAEEIAKTKQPDLTAADLDAAVRTIAGSARSMGITVEGV" FT misc_feature 9207..9605 FT /note="HMMPfam hit to PF00298, Ribosomal protein L11, score FT 5.2e-78" FT misc_feature 9561..9608 FT /note="PS00359 Ribosomal protein L11 signature." FT CDS 9617..10315 FT /transl_table=11 FT /gene="rplA" FT /locus_tag="BPP0011" FT /product="50S ribosomal protein L1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0011" FT /note="Similar to Escherichia coli 50S ribosomal protein L1 FT RplA or B3984 SWALL:RL1_ECOLI (SWALL:P02384) (233 aa) fasta FT scores: E(): 3.1e-50, 65.8% id in 231 aa, and to Neisseria FT meningitidis 50S ribosomal protein L1 RplA or Nma0145 or FT Nmb0128 SWALL:Q9JRJ1 (EMBL:AL162752) (231 aa) fasta scores: FT E(): 3.7e-52, 68.26% id in 230 aa" FT /protein_id="CAE39752.1" FT /translation="MAKLSKRAAAIAQKIDRTKLYPVGEALNLVKETATAKFDESIDVA FT VQLGIDPKKSDQLVRGSVVLPAGTGKTVRVAVFAQGEKADAARAAGADIVGLDDLAEQI FT KAGQMDFDVVIASPDTMRVVGALGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQIQY FT RTDKAGIIHATIGRASFGVEQLQNNLAALVDALQKARPAAAKGIYLRKLAVSSTMGGGA FT RVEIASLSAN" FT misc_feature 9659..10279 FT /note="HMMPfam hit to PF00687, Ribosomal protein L1p/L10e FT family, score 1.3e-117" FT misc_feature 9977..10033 FT /note="PS01199 Ribosomal protein L1 signature." FT CDS 10558..11082 FT /transl_table=11 FT /gene="rplJ" FT /locus_tag="BPP0012" FT /product="50S ribosomal protein L10" FT /note="ortholog of Bordetella pertussis (BX470248) BP0013" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50s ribosomal protein L10 RplJ or B3985 or Z5558 or FT Ecs4908 SWALL:RL10_ECOLI (SWALL:P02408) (164 aa) fasta FT scores: E(): 7.8e-18, 43.42% id in 175 aa, and to Neisseria FT meningitidis 50s ribosomal protein L10 RplJ or Nma0144 or FT Nmb0130 SWALL:RL10_NEIMA (SWALL:Q9JQP7) (166 aa) fasta FT scores: E(): 5.8e-29, 55.81% id in 172 aa" FT /protein_id="CAE39753.1" FT /translation="MSLNRQEKAVVIEEVSAQVAKAQSIVIAEYRGLDVASVTVLRKTA FT RESGVYLRVLKNTLVRRAVAGTAFEPLSEQLTGPLIYGISADPVAAAKVLAGFAKSNDK FT LVIKAGSLPNSLLTQDGVKALATMPSREELLSKLLGTMQAPIAQFVRTLNEVPTKFARG FT LAAVRDQKAAA" FT misc_feature 10564..10857 FT /note="HMMPfam hit to PF00466, Ribosomal protein L10, score FT 1.5e-22" FT CDS 11164..11547 FT /transl_table=11 FT /gene="rplL" FT /locus_tag="BPP0013" FT /product="50S ribosomal protein L7/L12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0014" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L7/L12 RplL or B3986 SWALL:RL7_ECOLI (SWALL:P02392) (120 FT aa) fasta scores: E(): 1.2e-18, 61.9% id in 126 aa, and to FT Neisseria perflava 50S ribosomal protein L7/L12 RplL FT SWALL:RL7_NEIPE (SWALL:Q9F5M1) (123 aa) fasta scores: E(): FT 1.2e-21, 66.14% id in 127 aa" FT /protein_id="CAE39754.1" FT /translation="MALSKAEILDAIAGMSVLELSELIKEMEEKFGVSAAAAAVAVAAP FT AAGGAGAAAAEEQTEFTVVLLEAGANKVSVIKAVRELTGLGLKEAKDLVDGAPKPVKEA FT LPKADAEAAKKKLEEAGAKVEVK" FT misc_feature 11341..11541 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00542, Ribosomal protein L7/L12 FT C-terminal domain, score 3.1e-37" FT CDS 11683..15819 FT /transl_table=11 FT /gene="rpoB" FT /gene_synonym="groN" FT /gene_synonym="nitB" FT /gene_synonym="rif" FT /gene_synonym="ron" FT /gene_synonym="stl" FT /gene_synonym="stv" FT /gene_synonym="tabD" FT /locus_tag="BPP0014" FT /product="DNA-directed RNA polymerase beta chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0015" FT /note="Similar to Escherichia coli DNA-directed RNA FT polymerase beta chain RpoB or GroN or NitB or Rif or Ron or FT Stl or Stv or TabD or B3987 or Z5560 or ECS4910 FT SWALL:RPOB_ECOLI (SWALL:P00575) (1342 aa) fasta scores: FT E(): 0, 64.11% id in 1371 aa, and to Pseudomonas aeruginosa FT DNA-directed RNA polymerase beta chain RpoB or PA4270 FT SWALL:RPOB_PSEAE (SWALL:Q51561) (1357 aa) fasta scores: FT E(): 0, 66.93% id in 1370 aa" FT /protein_id="CAE39755.1" FT /translation="MQPRVGVLMPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLT FT FLQADTATSDRVNEGLQAAFSSIFPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTY FT ASPLRAKVRLVLLDREVSKPTIKEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHR FT SPGVFFEHDRGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILL FT KAIGMTPESILAHFFDFDNFELKSEGGMMEFVAERWKGEMARFDIADRDGKVIVEKDKR FT INAKHLRDLAAGGIQRVSVPEDFLYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRA FT ANVRDIQTLYTNDLDRGPYISQTLRADETADQMAARVAIYRMMRPGEPPAEEAVEALFQ FT RLFYSEETYDLSRVGRMKVNSRLGRGDDSTGPMTLTNEDILETIKVLVELRNGRGQIDD FT IDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQAETENLMPHDLINSKPISAAIK FT EFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIE FT TPEGPNIGLINSMALYARLNEYGFLETPYRKIIDGKVSDQIDYLSAIEESHYVIAQANA FT ALDDEGRFVDDLVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDDANRAL FT MGANMQRQAVPCLRPEKPLVGTGVERTVAVDSGTTVQALRGGVVDHVDADRVVIRVNDE FT ENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVARGDKVAKGDVLADGASTDLGELALGQ FT NMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIEELTVVARDTKLGPEEITRDISNL FT AETQLNRLDDSGIVYIGAEVSADDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDT FT SLRVSSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELRRYRQDLNDQLRIVENDQFDRI FT EKMLVGKAVNGGPRKLAKGATLTKAYLADLDRWQWFDIRLADEQHAVVLEQAKESLEQK FT RHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQPGDKMAGRHGNKGVVSRIT FT PVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQ FT AKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLKKGVPFATPVFDGATEEEIGKML FT ELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTIGYMHYLKLHHLVDDKMHARST FT GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDITGRTKVYEN FT IVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN" FT misc_feature 11950..15687 FT /note="HMMPfam hit to PF00562, RNA polymerase beta subunit, FT score 0" FT misc_feature 14950..14988 FT /note="PS01166 RNA polymerases beta chain signature." FT CDS 15819..20063 FT /transl_table=11 FT /gene="rpoC" FT /gene_synonym="tabB" FT /locus_tag="BPP0015" FT /product="DNA-directed RNA polymerase beta' chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0016" FT /note="Similar to Escherichia coli DNA-directed RNA FT polymerase beta' chain RpoC or TabB or B3988 or Z5561 or FT ECS4911 SWALL:RPOC_ECOLI (SWALL:P00577) (1407 aa) fasta FT scores: E(): 0, 66.4% id in 1399 aa, and to Neisseria FT meningitidis DNA-directed RNA polymerase beta' chain RpoC FT or NMA0141 SWALL:Q9JX03 (EMBL:AL162752) (1391 aa) fasta FT scores: E(): 0, 77.09% id in 1384 aa" FT /protein_id="CAE39756.1" FT /translation="MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSFGEVRKPETIN FT YRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGH FT IELASPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDD FT DFLAKTEEYGDDFRALMGAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLK FT VLEGFQKSGIKAEWMVMEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR FT LLELKAPEIILRNEKRMLQEAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQ FT NLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKK FT LVESQEPVVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFN FT ADFDGDQMAVHVPLSLEAQLEARTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRER FT INGKGEGIFFADVSEVQRAYDNGEVELQTRITVRLTEYERDEQGEWQPVKHRHETTVGR FT ALLSEILPKGLPFTVLNKALKKKEISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRG FT GISIAMEDMLIPKAKEGILAEASREVKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVG FT KAMMEQLATEPVVNRHGEEVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS FT IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITED FT DCGTSHGYAMKALVEGGEVIEPLRDRILGRVAAIDVVNPDTQETAIAAGTLLDEDLVDL FT IDRLGVDEVKVRTPLTCETRHGLCAHCYGRDLGRGSHVNVGEAVGVIAAQSIGEPGTQL FT TMRTFHIGGAASRSALASAVETKSNGTVGFASTMRYVTNAKGERVAISRSGELAIFDDN FT GRERERHKIPYGATVLVGDGEAVKAGTRLASWDPLTRPIVSEYSGAVRFENIEEGVTVA FT KQVDEVTGLSTLVVITPKTRGGKIVMRPQIKLVNENGEDVKIAGTDHSVNISFPVGALI FT TVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFG FT KDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGI FT EKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTEFIPGEQVERSEL FT LNENDRVVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDL FT RGLKENVIVGRLIPAGTGLAYHIARKDKEALEAAEREAARQLANPFEDAPVTVGGEPEA FT PAADTPSDDSAE" FT misc_feature 16521..18311 FT /note="HMMPfam hit to PF00623, RNA polymerase alpha FT subunit, score 1.4e-274" FT misc_feature 16800..16823 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(20172..20576) FT /transl_table=11 FT /locus_tag="BPP0016" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0017" FT /note="no significant database matches" FT /protein_id="CAE39757.1" FT /translation="MPIILRPFLSSLSLAVLALSGCANLSQPAAEAPTTPAALQALAEV FT RTEYGAGHYGEVIRRVARSDELAAAPKAVRIEAFKLQAFSYCVSNYTQLCEDAFVRILH FT LDSSFTLAPNEAGHPAWGPVFRAAQSKAGT" FT misc_feature complement(20484..20576) FT /note="Signal peptide predicted for BPP0016 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.844) with cleavage site FT probability 0.529 between residues 50 and 51" FT CDS 20817..22043 FT /transl_table=11 FT /locus_tag="BPP0017" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0018" FT /note="no significant database matches" FT /protein_id="CAE39758.1" FT /translation="MPLSAASQHPRSPFAGAAPLAHRPLSAIAATAAGGVPQARIKRLL FT GELVPQLASVHEQGHICGDITVDSVGLDESGRAHLLALNGAAQGEAALPAPGYAPFELY FT VEDPAWPRGPWTDIYALSAVAHSLITGRRPPAAPERSVNDGYQPLAQRDLPKYDNDFLR FT AIDAGLAVRPQARPHTLEAFVDSLKFPEPEPPAEAMAPLPSEPPPRDEVRDEEPVRQRP FT AVRSILFAILLALAALGVAVYWWQRLTGTPSGVITSSERVTTPGATATPSDSREAERPA FT AGAAPPQGGDAGSADTSAPPAQAQAGPDAAPAPDVAPEGAATDAQAESEAAATPAPAAA FT RVTVRINVQPWGEIWINGVRRGVSPPMKELRLAPGRYSVVVRNADLPPYRATLEVKAGQ FT PARITHVFQ" FT misc_feature 21483..21551 FT /note="1 probable transmembrane helix predicted for BPP0017 FT by TMHMM2.0 at aa 223-245" FT CDS complement(join(22059..23636,23635..24351)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0018" FT /product="probable two-component sensor protein FT (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0019" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 239. Similar to Pseudomonas FT aeruginosa probable two-component sensor Pa4036 FT SWALL:Q9HWZ1 (EMBL:AE004820) (766 aa) fasta scores: E(): FT 1.8e-41, 35.85% id in 792 aa, and to Caulobacter crescentus FT sensor histidine kinase Cc0238 SWALL:Q9ABI9 (EMBL:AE005697) FT (534 aa) fasta scores: E(): 7.9e-15, 31.29% id in 278 aa" FT /db_xref="PSEUDO:CAE39759.1" FT misc_feature complement(22074..22421) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 6.6e-38" FT misc_feature complement(22551..22748) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 0.012" FT variation complement(23635..23637) FT /note="46 bp deletion following this codon in parapertussis FT relative to pertussis" FT misc_feature complement(24256..24351) FT /note="Signal peptide predicted for BPP0018 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.671) with cleavage site FT probability 0.192 between residues 32 and 33" FT CDS complement(24353..25459) FT /transl_table=11 FT /locus_tag="BPP0019" FT /product="putative peptidoglycan binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0020" FT /note="Similar to Caulobacter crescentus peptidoglycan FT binding domain protein Cc3326 SWALL:Q9A378 (EMBL:AE005994) FT (457 aa) fasta scores: E(): 2.4e-23, 33.8% id in 355 aa" FT /protein_id="CAE39760.1" FT /translation="MIRPFALAFMLVCALVASAAVQAQPAGSLGENFLYRVRSGDTLIA FT LASTYTGNESNWSVLQTLNRVDDPQRLPIALELRIPLAMIPVQAAGAEVVHVSGSATAD FT GQALRVGMQIVEGSTIRTASGSFVTLKLSDGSQVTIPENGTVAANRLRQFQRVPLTDSI FT FQVQQGELESRVAPGGQGVGRFEIRTPVAVTGVRGTRFRVKSSPQGASSEVLEGSVRLQ FT PHAPDAAPATPVAVSSGYGANVGSDGAFSGVQALLPAPQLQAPARAASGGWTVPFAPVS FT GASAYIVRVSRDAEGMHVVTSGRFDTNDVRFRAPGAGTYYVAVRAVDASGLNGREAVQP FT FEGANVLSTPYGLSVATGTGDLVLLSEF" FT misc_feature complement(25217..25357) FT /note="HMMPfam hit to PF01476, LysM domain, score 0.00042" FT misc_feature complement(25391..25459) FT /note="Signal peptide predicted for BPP0019 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.964 between residues 23 and 24" FT CDS complement(25477..26211) FT /transl_table=11 FT /locus_tag="BPP0020" FT /product="probable two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0021" FT /note="Similar to Caulobacter crescentus DNA-binding FT response regulator Cc3325 SWALL:Q9A379 (EMBL:AE005994) (236 FT aa) fasta scores: E(): 1.1e-37, 47.82% id in 230 aa, and to FT Pseudomonas aeruginosa probable two-component response FT regulator Pa4032 SWALL:Q9HWZ5 (EMBL:AE004820) (238 aa) FT fasta scores: E(): 4.6e-28, 41.27% id in 235 aa" FT /protein_id="CAE39761.1" FT /translation="MSQRMKIASLEDDLDQAQHIQQVLSAAGYTCTSYPRSLDLLAALR FT VQAFDLILLDWQLPDMNGDEVVRRLRTSYGFAVPIIFLTSRDQESDLVQGLQAGADDYI FT VKPMRPAELLARVAALLRRSQDALPDYLPFSVAGYRIDPNERSIALDGQVVPLPPKEFE FT LAQLFFRNIGRLLSRDVLAESVWNREIPATSRTLDTHLSNIRQKLQLRPQNGVRLSSSY FT ALGYRLELVSDPQPQADDAKDD" FT misc_feature complement(25537..25755) FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal, score 3.8e-10" FT misc_feature complement(25837..26199) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 3.2e-34" FT CDS 26469..27281 FT /transl_table=11 FT /locus_tag="BPP0021" FT /product="Two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0022" FT /note="Similar to Zymomonas mobilis aerobic respiration FT control protein ArcA SWALL:Q9X3W0 (EMBL:AF088896) (241 aa) FT fasta scores: E(): 7.9e-10, 31.06% id in 235 aa, and to FT Rhodobacter sphaeroides DmsR SWALL:O32479 (EMBL:D89075) FT (232 aa) fasta scores: E(): 2.7e-10, 28.81% id in 236 aa" FT /protein_id="CAE39762.1" FT /translation="MRNTAPHCLKCVQARAFPFERLKAGREPADWQGFVMKQLSTLIMT FT PDDADRDRIIAAMLLAGISAKGCSTPLELFGLLSEDTYDAVVMDLSELGELGYALVARL FT RGSPELGIIVIGGNLTLDARLRCLQSGADACVPLPADERELACVLLALARRLPAWQEDE FT EAVAQRGTDEGWELRDQDWTLVAPGGEELSLSANERQIVRLLLGAAGRAIGRAELASEL FT AVDGPAVRSTGERSIDVIVSRLRRKAELAGLVLPIRTVYGSGYLFANS" FT misc_feature 26583..26939 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 0.0016" FT misc_feature 27036..27260 FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal, score 2.4e-05" FT CDS complement(27311..28246) FT /transl_table=11 FT /locus_tag="BPP0022" FT /product="putative metal transporter" FT /note="Similar to Rhizobium meliloti putative FT histidine-rich transporter transmembrane protein R01996 or FT Smc04167 SWALL:Q92P03 (EMBL:AL591789) (321 aa) fasta FT scores: E(): 6.7e-57, 55.41% id in 314 aa, and to FT Bradyrhizobium japonicum putative inner membrane protein FT SWALL:Q9RH59 (EMBL:AF065159) (344 aa) fasta scores: E(): FT 3.3e-44, 46.23% id in 305 aa" FT /protein_id="CAE39763.1" FT /translation="MDSLPPSPPGRHGHSFLGPAHDENAKRTRWVVLLTLAMMVGEIVA FT GYLTGSMALLADGFHMATHAGALGIAAIAYAYAKRNADNRAFSFGTGKVGELAGFASAL FT MLAMVSLAIGVESAIRLVQPTDVAFGEATLIAVVGLGVNLVSALLLGGGHAGHVHAEHH FT HPGHARHPHGHDNNLRSAYVHVLADALTSVLAIVALLAGRYLGWIWLDPVIGMVGAVVI FT ARWAWTLMRDTGAILLDKADRHLEAEVRGAIETAGDATIADLHIWQIGPQAHAAIVSVV FT AARGVTASQIRERVSSIHEVRHLTVELVPA" FT misc_feature complement(27317..28165) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01545, Cation efflux family, score FT 7.5e-35" FT misc_feature complement(join(27566..27631,27647..27703,27785..27850, FT 27890..27955,28016..28072,28094..28159)) FT /note="6 probable transmembrane helices predicted for FT BPP0022 by TMHMM2.0 at aa 29-51, 58-77, 97-119, 132-154, FT 181-200 and 205-227" FT CDS complement(28252..28527) FT /transl_table=11 FT /locus_tag="BPP0023" FT /product="conserved hypothetical protein" FT /note="Similar to Serratia marcescens hypothetical 10.1 kDa FT protein in bioA 5'region SWALL:YOHL_SERMA (SWALL:P55757) FT (91 aa) fasta scores: E(): 7.7e-13, 43.95% id in 91 aa, and FT to Pseudomonas aeruginosa hypothetical protein Pa1298 FT SWALL:Q9I446 (EMBL:AE004559) (91 aa) fasta scores: E(): FT 1.5e-11, 42.85% id in 91 aa" FT /protein_id="CAE39764.1" FT /translation="MSHLSDHKDELLKRTQRIAGQVQAIQRSLETEADCESILHLVAAT FT RGALNGLLDEILEAHAREHVAHPDLTPDARSKGLEALVSAIRRYSK" FT misc_feature complement(28258..28446) FT /note="HMMPfam hit to PF02583, Uncharacterized BCR, FT COG1937, score 4e-07" FT CDS 29104..29481 FT /transl_table=11 FT /gene="rpsL" FT /locus_tag="BPP0024" FT /product="30S ribosomal protein S12" FT /note="ortholog of Bordetella pertussis (BX470248) BP3608" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S12 RpsL SWALL:RS12_ECOLI (SWALL:P02367) (123 aa) fasta FT scores: E(): 3.7e-39, 81.81% id in 121 aa, and to FT Thiobacillus cuprinus 30S ribosomal protein S12 RpsL FT SWALL:RS12_THICU (SWALL:O50563) (124 aa) fasta scores: E(): FT 2.7e-41, 88.71% id in 124 aa" FT /protein_id="CAE39765.1" FT /translation="MPTISQLVRKPREVSIIKSKSPALENCPQRRGVCTRVYTTTPKKP FT NSALRKVAKVRLTNGYEVISYIGGEGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGSLDL FT QGVKDRKQARSKYGAKRPKKA" FT misc_feature 29104..29472 FT /note="HMMPfam hit to PF00164, Ribosomal protein S12, score FT 3.8e-79" FT misc_feature 29230..29253 FT /note="PS00055 Ribosomal protein S12 signature." FT CDS 29645..30115 FT /transl_table=11 FT /gene="rpsG" FT /locus_tag="BPP0025" FT /product="30S ribosomal protein S7" FT /note="ortholog of Bordetella pertussis (BX470248) BP3609" FT /note="Similar to Escherichia coli 30S ribosomal protein S7 FT RpsG or B3341 SWALL:RS7_ECOLI (SWALL:P02359) (178 aa) fasta FT scores: E(): 3.9e-39, 66.45% id in 155 aa, and to Neisseria FT meningitidis 30S ribosomal protein S7 RpsG or Nma0136 or FT Nmb0137 SWALL:RS7_NEIMA (SWALL:Q9JR15) (156 aa) fasta FT scores: E(): 7.1e-50, 84.61% id in 156 aa" FT /protein_id="CAE39766.1" FT /translation="MPRRREVPKREILPDPKFGSVELAKFMNVVMLDGKKAVAERIIYG FT ALEQVQVKTGKDAIEVFNLAINNIKPIVEVKSRRVGGANYQVPVEVRPVRRLALAMRWL FT REAAKKRGEKSMDLRLAGELIDASEGRGAAMKKREDTHKMAEANKAFSHFRW" FT misc_feature 29645..30109 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00177, Ribosomal protein S7p/S5e, FT score 2.9e-89" FT misc_feature 29702..29782 FT /note="PS00052 Ribosomal protein S7 signature." FT CDS 30133..32235 FT /transl_table=11 FT /gene="fusA" FT /gene_synonym="fus" FT /gene_synonym="far1" FT /locus_tag="BPP0026" FT /product="elongation factor G" FT /note="ortholog of Bordetella pertussis (BX470248) BP3610" FT /note="Similar to Escherichia coli elongation factor G FT (EF-G) FusA or Fus or Far or B3340 or Z4698 or Ecs4191 FT SWALL:EFG_ECOLI (SWALL:P02996) (703 aa) fasta scores: E(): FT 2.3e-185, 74% id in 704 aa, and to Neisseria meningitidis FT elongation factor G FusA or Nma0135 SWALL:Q9JX07 FT (EMBL:AL162752) (701 aa) fasta scores: E(): 8.1e-192, 75% FT id in 700 aa" FT /protein_id="CAE39767.1" FT /translation="MARKTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKLGETHD FT GSATMDWMEQEQERGITITSAATTAFWRGMAGNYPEYRINIIDTPGHVDFTIEVERSMR FT VLDGACMVYCAVGGVQPQSETVWRQANKYGVPRLAFVNKMDRTGANFFKVYDQLKTRLR FT ANPVPIVIPIGAEDSFTGVVDLVKMKAIIWDEASQGTKFEYGDIPAELEGTANEWREKL FT VEAAAESSEELMNKYLETGSLDEDDINVALRQRTIAGEIQPMLCGTAFKNKGVQRMLDA FT VIDYLPSPADIPPVDGQDDDGNPIKRSADDAEKFSALAFKLMSDPFVGQLTFVRVYSGV FT LKSGDTVYNPIKGKKERIGRLLQMHANNREEIKEVLAGDIAAVVGLKDVTTGETLCDID FT SHILLERMEFPEPVISQAVEPKSKADQEKMGLALSRLAQEDPSFRVRSDEESGQTIISG FT MGELHLEILVDRMRREFGVEANVGKPQVAYRETIRKNCDEVEGKFVKQSGGRGQYGHVV FT LKLEPLPPGGGYEFVDAIKGGVVPREYIPAVDKGIQETLPAGILAGYPVVDVKATLFFG FT SYHDVDSNENAFKMAASMAFKEGMRRASPVLLEPMMAVEVETPEDYAGTVMGDLSSRRG FT MVQGMDDIVGGGKTIKAEVPLAEMFGYATNLRSLTQGRATYTMEFKHYAEAPKNVADEV FT IAARGK" FT misc_feature 30154..31002 FT /note="HMMPfam hit to PF00009, Elongation factor Tu GTP FT binding domain, score 1.6e-107" FT misc_feature 30181..30204 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 30283..30330 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 31081..31320 FT /note="HMMPfam hit to PF03144, Elongation factor Tu domain FT 2, score 1e-26" FT misc_feature 31684..32202 FT /note="HMMPfam hit to PF00679, Elongation factor G FT C-terminus, score 1.2e-110" FT CDS 32312..33502 FT /transl_table=11 FT /gene="tuf" FT /gene_synonym="tufA" FT /gene_synonym="tufB" FT /locus_tag="BPP0027" FT /product="elongation factor Tu" FT /note="ortholog of Bordetella pertussis (BX470248) BP3611" FT /note="Similar to Escherichia coli elongation factor Tu FT TufA or Z4697 or Ecs4190 SWALL:Q8X4S9 (EMBL:J01690) (394 FT aa) fasta scores: E(): 9.7e-123, 81.51% id in 395 aa, and FT to Burkholderia cepacia elongation factor Tu TufA FT SWALL:EFTU_BURCE (SWALL:P33167) (396 aa) fasta scores: E(): FT 8.8e-139, 92.65% id in 395 aa" FT /protein_id="CAE39768.1" FT /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEAR FT GYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDF FT PGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFS FT ISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILL FT RGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDV FT TGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK" FT misc_feature 32339..32929 FT /note="HMMPfam hit to PF00009, Elongation factor Tu GTP FT binding domain, score 8.5e-98" FT misc_feature 32366..32389 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 32462..32509 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 32963..33199 FT /note="HMMPfam hit to PF03144, Elongation factor Tu domain FT 2, score 5e-29" FT misc_feature 33209..33496 FT /note="HMMPfam hit to PF03143, Elongation factor Tu FT C-terminal domain, score 4.5e-60" FT CDS 33566..33877 FT /transl_table=11 FT /gene="rpsJ" FT /gene_synonym="nusE" FT /locus_tag="BPP0028" FT /product="30S ribosomal protein S10" FT /note="ortholog of Bordetella pertussis (BX470248) BP3612" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S10 RpsJ or NusE or B3321 or Z4692 or Ecs4186 FT SWALL:RS10_ECOLI (SWALL:P02364) (103 aa) fasta scores: E(): FT 2e-27, 75.48% id in 102 aa, and to Ralstonia solanacearum FT 30S ribosomal protein S10 RpsJ or Rsc3020 or Rs04737 FT SWALL:RS10_RALSO (SWALL:Q8XV11) (104 aa) fasta scores: E(): FT 3.7e-34, 90.19% id in 102 aa" FT /protein_id="CAE39769.1" FT /translation="MKNQKIRIRLKAFDYKLIDQSAAEIVDTAKRTGAVVRGPVPLPTR FT IRRYDVLRSPHVNKTSRDQFEIHTHQRLMDIVDPTDKTVDALMRLDLPAGVDVEIALQ" FT misc_feature 33578..33865 FT /note="HMMPfam hit to PF00338, Ribosomal protein S10p/S20e, FT score 4e-55" FT misc_feature 33650..33697 FT /note="PS00361 Ribosomal protein S10 signature." FT CDS 34217..34918 FT /transl_table=11 FT /gene="rplC" FT /locus_tag="BPP0029" FT /product="50S ribosomal protein L3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3613" FT /note="Similar to Escherichia coli 50S ribosomal protein L3 FT RplC or B3320 or Z4691 or Ecs4185 SWALL:RL3_ECOLI FT (SWALL:P02386) (209 aa) fasta scores: E(): 1.1e-47, 67.77% FT id in 211 aa, and to Neisseria meningitidis 50S ribosomal FT protein L3 RplC or Nma0129 or Nmb0142 SWALL:Q9JRH6 FT (EMBL:AL162752) (214 aa) fasta scores: E(): 3.2e-51, 69.48% FT id in 213 aa" FT /protein_id="CAE39770.1" FT /translation="MEKTMSNSTPTPAAHRLGLVGRKVGMTRIFTEDGESIPVTVLDVS FT NNRVTQVKSLESDGYAAIQVTYGTRRATRVVKPQAGHYAKAGAEAGSILKEFRLDPARA FT AEFAAGAVIAVESVFEAGQQVDVTGTSIGKGFAGTIKRHNFGSQRASHGNSRSHRVPGS FT IGQAQDPGRIFPGKRMSGHMGDVTRTVQNLDVVRVDAERGLLMVKGAVPGHAGGDVIVR FT PAVKAPAKKGA" FT misc_feature 34283..34882 FT /note="HMMPfam hit to PF00297, Ribosomal protein L3, score FT 2.1e-87" FT misc_feature 34571..34642 FT /note="PS00474 Ribosomal protein L3 signature." FT CDS 34923..35540 FT /transl_table=11 FT /gene="rplD" FT /locus_tag="BPP0030" FT /product="50S ribosomal protein L4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3614" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 50S FT ribosomal protein L4 RplD or EryA or B3319 or Z4690 or FT Ecs4184 or Stm3439 or Sty4359 SWALL:RL4_ECOLI FT (SWALL:P02388) (201 aa) fasta scores: E(): 9.7e-41, 58.33% FT id in 204 aa, and to Neisseria meningitidis 50s ribosomal FT protein L4 RplD or Nma0128 or Nmb0143 SWALL:Q9JRA2 FT (EMBL:AL162752) (206 aa) fasta scores: E(): 3.9e-51, 65.02% FT id in 203 aa" FT /protein_id="CAE39771.1" FT /translation="MDLKLLNDQGQAATFSAPDTIFGRDFNEALVHQIVVAFQANARSG FT NRAQKDRAEVKHSTKKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKM FT YRAGIRSILSQLAREDRVAVVDTFTLESPKTKLAAAKLKSLGLDSVLIITDNVDENVYL FT ATRNLPHVAVVEPRYADPLSLIHYKKVLITKPAIAQLEEMLG" FT misc_feature 34959..35531 FT /note="HMMPfam hit to PF00573, Ribosomal protein L4/L1 FT family, score 7.8e-47" FT CDS 35537..35833 FT /transl_table=11 FT /gene="rplW" FT /locus_tag="BPP0031" FT /product="50S ribosomal protein L23" FT /note="ortholog of Bordetella pertussis (BX470248) BP3615" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L23 RplW or B3318 or Z4689 or Ecs4183 SWALL:RL23_ECOLI FT (SWALL:P02424) (100 aa) fasta scores: E(): 2.1e-14, 54.94% FT id in 91 aa, and to Neisseria meningitidis 50S ribosomal FT protein L23 RplW or Nma0127 SWALL:Q9JX11 (EMBL:AL162752) FT (106 aa) fasta scores: E(): 1e-18, 63.83% id in 94 aa" FT /protein_id="CAE39772.1" FT /translation="MNAERLMQVILAPIVTEKATFVAEKNQQVAFRVVADATKPEIKAA FT VELLFKVQVESVQVLNRKGKVKRFGRFVGRRRNERKAYVALKDGQEIDFAEVK" FT misc_feature 35555..35827 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00276, Ribosomal protein L23, score FT 1.2e-25" FT CDS 35834..36661 FT /transl_table=11 FT /gene="rplB" FT /locus_tag="BPP0032" FT /product="50S ribosomal protein L2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3616" FT /note="Similar to Escherichia coli 50S ribosomal protein L2 FT RplB or B3317 or Z4688 or Ecs4182 SWALL:RL2_ECOLI FT (SWALL:P02387) (272 aa) fasta scores: E(): 5e-75, 67.03% id FT in 273 aa, and to Neisseria meningitidis 50S ribosomal FT protein L2 Nmb0145 SWALL:Q9K1I5 (EMBL:AE002373) (277 aa) FT fasta scores: E(): 1.1e-92, 81.61% id in 272 aa" FT /protein_id="CAE39773.1" FT /translation="MALVKVKPTSAGRRGMVKVVSPKLHKGAPHAALLEKKTRGSGRNN FT NGHITVRHRGGGHKQHYRVVDFRRNKDGIPAKVERLEYDPNRTAHIALLCYADGERRYI FT IAPRGLEVGATLISGIEAPIRAGNTLPIRNIPVGTTIHCIEMIPGKGAQMARSAGASAV FT LMAREGTYAQVRLRSGEVRRVHIQCRATIGEVGNEEHSLRQIGKAGAMRWRGVRPTVRG FT VAMNPIDHPHGGGEGRTGEAREPVSPWGTPAKGFKTRRNKRTNNMIVQRRKRK" FT misc_feature 35957..36613 FT /note="HMMPfam hit to PF00181, Ribosomal Proteins L2, score FT 4.3e-144" FT misc_feature 36485..36520 FT /note="PS00467 Ribosomal protein L2 signature." FT CDS 36674..36949 FT /transl_table=11 FT /gene="rpsS" FT /locus_tag="BPP0033" FT /product="30S ribosomal protein S19" FT /note="ortholog of Bordetella pertussis (BX470248) BP3617" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S19 RpsS or B3316 or Z4687 or Ecs4181 SWALL:RS19_ECOLI FT (SWALL:P02375) (91 aa) fasta scores: E(): 4.4e-27, 71.91% FT id in 89 aa, and to Ralstonia solanacearum 30S ribosomal FT protein S19 RpsS or Rsc3015 or Rs04742 SWALL:RS19_RALSO FT (SWALL:Q8XV16) (91 aa) fasta scores: E(): 2.7e-33, 86.81% FT id in 91 aa" FT /protein_id="CAE39774.1" FT /translation="MSRSIKKGPFVDAHLIKKVDAAVAGKDKKPIKTWSRRSTVLPEFI FT GLTIAVHNGRQHVPVYINENMVGHKLGEFALTRTFKGHAADKKSKR" FT misc_feature 36680..36922 FT /note="HMMPfam hit to PF00203, Ribosomal protein S19, score FT 1.1e-50" FT misc_feature 36830..36904 FT /note="PS00323 Ribosomal protein S19 signature." FT CDS 36953..37282 FT /transl_table=11 FT /gene="rplV" FT /locus_tag="BPP0034" FT /product="50S ribosomal protein L22" FT /note="ortholog of Bordetella pertussis (BX470248) BP3618" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 50S FT ribosomal protein L22 RplV or EryB or b3315 or z4686 or FT ecs4180 or stm3435 or sty4363 SWALL:RL22_ECOLI FT (SWALL:P02423) (110 aa) fasta scores: E(): 1.4e-23, 70.09% FT id in 107 aa, and to Neisseria meningitidis 50s ribosomal FT protein L22 RplV or nma0124 or nmb0147 SWALL:Q9JRD8 FT (EMBL:AL162752) (109 aa) fasta scores: E(): 2.3e-28, 75.92% FT id in 108 aa" FT /protein_id="CAE39775.1" FT /translation="METTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAV FT ILKKAVESAIANAEHNDGADIDELKVTTIFVDKAQSMKRFSARAKGRGNRIEKQTCHIT FT VKVGA" FT misc_feature 36965..37276 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00237, Ribosomal protein L22p/L17e, FT score 1.6e-49" FT misc_feature 37013..37036 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 37199..37273 FT /note="PS00464 Ribosomal protein L22 signature." FT CDS 37292..38083 FT /transl_table=11 FT /gene="rpsC" FT /locus_tag="BPP0035" FT /product="30S ribosomal protein S3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3619" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 30S FT ribosomal protein S3 RpsC or b3314 or z4685 or ecs4179 or FT stm3434 or sty4364 SWALL:RS3_ECOLI (SWALL:P02352) (232 aa) FT fasta scores: E(): 3.3e-50, 61.2% id in 232 aa, and to FT Neisseria meningitidis 30s ribosomal protein S3 RpsC or FT nma0123 or nmb0148 SWALL:Q9JQX2 (EMBL:AL162752) (230 aa) FT fasta scores: E(): 6.7e-55, 71.12% id in 232 aa" FT /protein_id="CAE39776.1" FT /translation="MGQKIHPTGFRLAVTRNWTSRWFADDKAFGTMLAEDIRVREYLKK FT KLKSASVGRVIIERPAKNARITVYSARPGVVIGKRGEDIENLKADLQRLMGVPVHVNIE FT EIRKPETDAQLIADSISQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIA FT RTEWYREGRVPLHTLKANIDYGTSEAHTTYGVIGIKVWVYKGDMLANGELPPEAATPRE FT EERRPRRAPRGDRPDGARTGRPGGRGRGPRKADAAPAPEGE" FT misc_feature 37292..37477 FT /note="HMMPfam hit to PF00417, Ribosomal protein S3, FT N-terminal domain, score 1.8e-25" FT misc_feature 37484..37627 FT /note="HMMPfam hit to PF00013, KH domain, score 5.5e-07" FT misc_feature 37646..37897 FT /note="HMMPfam hit to PF00189, Ribosomal protein S3, FT C-terminal domain, score 2e-51" FT misc_feature 37778..37882 FT /note="PS00548 Ribosomal protein S3 signature." FT CDS 38086..38502 FT /transl_table=11 FT /gene="rplP" FT /locus_tag="BPP0036" FT /product="50S ribosomal protein L16" FT /note="ortholog of Bordetella pertussis (BX470248) BP3620" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50S ribosomal protein L16 RplP or b3313 or z4684 or FT ecs4178 SWALL:RL16_ECOLI (SWALL:P02414) (136 aa) fasta FT scores: E(): 4.2e-38, 75.73% id in 136 aa, and to Ralstonia FT solanacearum probable 50S ribosomal subunit protein L16 FT RplP or rsc3012 or rs01077 SWALL:Q8XV19 (EMBL:AL646073) FT (138 aa) fasta scores: E(): 6.2e-46, 86.13% id in 137 aa" FT /protein_id="CAE39777.1" FT /translation="MLQPSRRKYRKEQKGRNTGLASRGTHVSFGEFGLKATGRGRLTAR FT QIEAARRAINRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYWVAEIQPGKVLY FT EMEGVSEELAREAFRLAAAKLPISTTFVARHIGA" FT misc_feature 38086..38481 FT /note="HMMPfam hit to PF00252, Ribosomal protein L16, score FT 7.7e-88" FT misc_feature 38260..38295 FT /note="PS00586 Ribosomal protein L16 signature 1." FT misc_feature 38329..38364 FT /note="PS00701 Ribosomal protein L16 signature 2." FT CDS 38513..38704 FT /transl_table=11 FT /gene="rpmC" FT /locus_tag="BPP0037" FT /product="50S ribosomal protein L29" FT /note="ortholog of Bordetella pertussis (BX470248) BP3621" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50S ribosomal protein L29 RpmC or b3312 or z4683 or FT ecs4177 SWALL:RL29_ECOLI (SWALL:P02429) (63 aa) fasta FT scores: E(): 1.1e-09, 59.67% id in 62 aa, and to Ralstonia FT solanacearum 50S ribosomal protein L29 RpmC or rsc3011 or FT rs01354 SWALL:RL29_RALSO (SWALL:Q8XV20) (64 aa) fasta FT scores: E(): 3.7e-14, 76.19% id in 63 aa" FT /protein_id="CAE39778.1" FT /translation="MKASELRSKDAAELGKELESLLKAQFGLRMQKATQQLANTSQLRN FT VRRDIARVRTLLTEKAGK" FT misc_feature 38519..38698 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00831, Ribosomal L29 protein, score FT 1.3e-14" FT misc_feature 38627..38671 FT /note="PS00579 Ribosomal protein L29 signature." FT CDS 38706..38987 FT /transl_table=11 FT /gene="rpsQ" FT /locus_tag="BPP0038" FT /product="30S ribosomal protein S17" FT /note="ortholog of Bordetella pertussis (BX470248) BP3622" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 30S ribosomal protein S17 RpsQ or neaa or b3311 or FT z4681 or ecs4176 SWALL:RS17_ECOLI (SWALL:P02373) (83 aa) FT fasta scores: E(): 5.3e-15, 57.14% id in 77 aa, and to FT Ralstonia solanacearum probable 30S ribosomal subunit FT protein S17 RpsQ or rsc3010 or rs01078 SWALL:Q8XV21 FT (EMBL:AL646073) (89 aa) fasta scores: E(): 3.5e-22, 75.3% FT id in 81 aa" FT /protein_id="CAE39779.1" FT /translation="MSETQNTQVAKRQRTLVGKVVSNKMDKTVVVLVERRVKHPIFGKI FT IMRSAKYKAHDESNQYNEGDTVEIAEGRPISRSKAWRVVRLVEAARVI" FT misc_feature 38757..38963 FT /note="HMMPfam hit to PF00366, Ribosomal protein S17, score FT 7.3e-32" FT misc_feature 38895..38933 FT /note="PS00056 Ribosomal protein S17 signature." FT CDS complement(join(39153..39911,39915..40016)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0039" FT /product="putative hydrolase (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3623" FT /note="Pseudogene. This CDS has an in-frame stop codon. FT Similar to Acidovorax sp. SA1 D-(-)-3-hydroxybutyrate FT oligomer hydrolase SWALL:Q9F1T8 (EMBL:AB044565) (291 aa) FT fasta scores: E(): 1.2e-63, 58.09% id in 284 aa" FT /db_xref="PSEUDO:CAE39780.1" FT misc_feature complement(39177..39851) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 7.6e-07" FT variation complement(39912..39914) FT /note="In-frame TAG stop codon in parapertussis; TGG in FT pertussis and bronchiseptica" FT CDS complement(40103..41530) FT /transl_table=11 FT /locus_tag="BPP0040" FT /product="putative aldehyde dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3624" FT /note="Similar to Escherichia coli O157:H7 FT succinate-semialdehyde dehydrogenase, NADP-dependent FT activity GabD or z3959 or ecs3522 SWALL:Q8X950 FT (EMBL:AE005495) (482 aa) fasta scores: E(): 3.7e-75, 43.34% FT id in 473 aa, and to Acinetobacter sp., and Acinetobacter FT sp. NCIMB9871 6-oxohexanoate dehydrogenase ChnE FT SWALL:Q9R2F4 (EMBL:AB006902) (477 aa) fasta scores: E(): FT 6e-117, 60.75% id in 474 aa" FT /protein_id="CAE39781.1" FT /translation="MYEQLALYIDGEFLTGDGRRTQDVVNPATLEVLGQLPHASEADLD FT RALAAAQRAFETWKRTSPMERAAILRKVGQLSRDRAQEIGRNMTLDQGKPLAEAVGEVA FT SCSEHADWHAEECRRIYGRVIPPRNPDVRQFVVREPIGVCAAFTPWNFPYNQAIRKIAA FT ALGAGCTVVLKGPEDSPSAVMAIARMFHEAGLPKGCLNIVWGEPAKISDYLIRSPIVRK FT VSFTGSVPVGKQLAALAGAHMKRVTMELGGHSPVLVFDDADVDRAAEMLERFKVRNAGQ FT VCVSPTRFYVQNGAYEQFLARFTEVLKNIKVGDGLEKGTDMGPLAHERRVPAMSTFVDD FT ALKHGGKVVLGGDAPDRKGYFFSPTVVTELPDNAMLMTEEPFGPLAPVVRFTDTDEVLR FT RANSLPFGLSSYVFTNSLKTATKVSNALEAGMVNINHFGSALAETPFGGIKDSGIGSEG FT GLETFDGYLVTKYITHI" FT misc_feature complement(40109..41497) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 1.6e-173" FT CDS 42425..42793 FT /transl_table=11 FT /gene="rplN" FT /locus_tag="BPP0041" FT /product="50S ribosomal protein L14" FT /note="ortholog of Bordetella pertussis (BX470248) BP3626" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50S ribosomal protein L14 RplN or b3310 or z4680 or FT ecs4175 SWALL:RL14_ECOLI (SWALL:P02411) (123 aa) fasta FT scores: E(): 8.2e-35, 76.42% id in 123 aa, and to Ralstonia FT solanacearum probable 50S ribosomal subunit protein L14 FT RplN or rsc3009 or rs01079 SWALL:Q8XV22 (EMBL:AL646073) FT (122 aa) fasta scores: E(): 3.3e-40, 89.34% id in 122 aa" FT /protein_id="CAE39782.1" FT /translation="MIQMQTTLDVADNTGARAVMCIKVLGGSKRRYAGIGDIIKVSVKD FT AAPRGRVKKGEIYNAVVVRTAKGVRRKDGSLIRFGGNAAVLLNAKLEPIGTRIFGPVTR FT ELRTERFMKIVSLAPEVL" FT misc_feature 42425..42787 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00238, Ribosomal protein L14p/L23e, FT score 4.9e-72" FT misc_feature 42602..42682 FT /note="PS00049 Ribosomal protein L14 signature." FT CDS 42804..43124 FT /transl_table=11 FT /gene="rplX" FT /locus_tag="BPP0042" FT /product="50S ribosomal protein L24" FT /note="ortholog of Bordetella pertussis (BX470248) BP3627" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, and Salmonella typhimurium 50S ribosomal protein FT L24 RplX or b3309 or z4679 or ecs4174 or stm3429 FT SWALL:RL24_ECOLI (SWALL:P02425) (103 aa) fasta scores: E(): FT 7.9e-18, 58.58% id in 99 aa, and to Ralstonia solanacearum FT probable 50S ribosomal subunit protein L24 RplX or rsc3008 FT or rs01081 SWALL:Q8XV23 (EMBL:AL646073) (102 aa) fasta FT scores: E(): 2.4e-19, 60.57% id in 104 aa" FT /protein_id="CAE39783.1" FT /translation="MNNIRKGDEVIVLTGRDKKRRGTVLARVDADHVLVEGVNVVKKHV FT KANPMANNPGGIVEKTMPIHVSNVALFNPATGKGDRVGVQEVDGRKVRVFRSNGAVVGA FT KA" FT misc_feature 42813..42911 FT /note="HMMPfam hit to PF00467, KOW motif, score 0.00028" FT CDS 43137..43676 FT /transl_table=11 FT /gene="rplE" FT /locus_tag="BPP0043" FT /product="50S ribosomal protein L5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3628" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50S ribosomal protein l5 RplE or b3308 or z4678 or FT ecs4173 SWALL:RL5_ECOLI (SWALL:P02389) (178 aa) fasta FT scores: E(): 2.8e-48, 63.84% id in 177 aa, and to Ralstonia FT solanacearum probable 50S ribosomal subunit protein l5 RplE FT or rsc3007 or rs01082 SWALL:Q8XV24 (EMBL:AL646073) (180 aa) FT fasta scores: E(): 3.7e-59, 85.39% id in 178 aa" FT /protein_id="CAE39784.1" FT /translation="MSRLQEFYKSKVVADLQAKFGYKCVMEVPRITKITLNMGVSEAVA FT DKKVIEHAVSDLTKISGQKPVVTKTRKAIAGFKIRENYPIGCMVTLRGQRMYEFLDRLV FT AVALPRVRDFRGISGRAFDGRGNYNIGVKEQIIFPEIEYDKIDALRGLNISITTTAKTD FT DEAKALLTAFSFPFRN" FT misc_feature 43209..43376 FT /note="HMMPfam hit to PF00281, Ribosomal protein L5, score FT 8.5e-25" FT misc_feature 43305..43355 FT /note="PS00358 Ribosomal protein L5 signature." FT misc_feature 43386..43670 FT /note="HMMPfam hit to PF00673, ribosomal L5P family FT C-terminus, score 4.2e-51" FT CDS 43689..43994 FT /transl_table=11 FT /gene="rpsN" FT /locus_tag="BPP0044" FT /product="30S ribosomal protein S14" FT /note="ortholog of Bordetella pertussis (BX470248) BP3629" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 30s ribosomal protein S14 RpsN or b3307 or z4677 or FT ecs4172 SWALL:RS14_ECOLI (SWALL:P02370) (100 aa) fasta FT scores: E(): 3e-22, 64% id in 100 aa, and to Ralstonia FT solanacearum 30s ribosomal protein S14 RpsN or rsc3006 or FT rs01083 SWALL:RS14_RALSO (SWALL:Q8XV25) (101 aa) fasta FT scores: E(): 8.3e-29, 78.21% id in 101 aa" FT /protein_id="CAE39785.1" FT /translation="MAKLSLINRDIKRAKLADKYAAKRAELKAIIDDQSKTDEERYQAR FT LKLQQLPRNANPTRQRNRCVVTGRPRGVFRKFGLTRHKLREMAMKGEVPGMTKASW" FT misc_feature 43689..43988 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00253, Ribosomal protein S14p/S29e, FT score 1.7e-49" FT CDS 44005..44400 FT /transl_table=11 FT /gene="rpsH" FT /locus_tag="BPP0045" FT /product="30S ribosomal protein S8" FT /note="ortholog of Bordetella pertussis (BX470248) BP3630" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 30s FT ribosomal protein S8 RpsH or b3306 or z4676 or ecs4171 or FT stm3426 or sty4372 SWALL:RS8_ECOLI (SWALL:P02361) (129 aa) FT fasta scores: E(): 1.9e-31, 66.92% id in 130 aa, and to FT Ralstonia solanacearum probable 30s ribosomal subunit FT protein S8 RpsH or rsc3005 or rs01085 SWALL:Q8XV26 FT (EMBL:AL646073) (131 aa) fasta scores: E(): 6.3e-36, 76.33% FT id in 131 aa" FT /protein_id="CAE39786.1" FT /translation="MSMSDPIADMLTRIRNAQQVDKTTVTMPASKLKVAIATVLKDEGY FT IDGYSVKGTQAKPELEITLKYYAGRPVIERIERVSRPGLRIYKGRTSIPQVMNGLGVAI FT VSTSRGVMTDRKARANGVGGEVLCYVA" FT misc_feature 44032..44394 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00410, Ribosomal protein S8, score FT 5e-55" FT misc_feature 44305..44358 FT /note="PS00053 Ribosomal protein S8 signature." FT CDS 44411..44944 FT /transl_table=11 FT /gene="rplF" FT /locus_tag="BPP0046" FT /product="50S ribosomal protein L6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3631" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50s ribosomal protein L6 RplF or b3305 or z4675 or FT ecs4170 SWALL:RL6_ECOLI (SWALL:P02390) (176 aa) fasta FT scores: E(): 5.1e-34, 57.95% id in 176 aa, and to Ralstonia FT solanacearum probable 50s ribosomal subunit protein L6 RplF FT or rsc3004 or rs01086 SWALL:Q8XV27 (EMBL:AL646073) (177 aa) FT fasta scores: E(): 1.4e-42, 67.23% id in 177 aa" FT /protein_id="CAE39787.1" FT /translation="MSRIAKYPVELPKGVEASIQPDQITVKGPLGTLVQSLTGDVNVAQ FT EDGKLTFVVANDSRHANAMSGTLRALVANMVTGVSKGFERKLNLVGVGYRAQIQGDAVK FT LQLGFSHDVVHQLPAGVKAECPTQTEIVIKGPNKQVVGQVAAEIRKYREPEPYKGKGVR FT YADERVVIKETKKK" FT misc_feature 44441..44938 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00347, Ribosomal protein L6, score FT 4e-71" FT misc_feature 44870..44896 FT /note="PS00525 Ribosomal protein L6 signature 1." FT CDS 44966..45328 FT /transl_table=11 FT /gene="rplR" FT /locus_tag="BPP0047" FT /product="50S ribosomal protein L18" FT /note="ortholog of Bordetella pertussis (BX470248) BP3632" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50s ribosomal protein L18 RplR or b3304 or z4674 or FT ecs4169 SWALL:RL18_ECOLI (SWALL:P02419) (117 aa) fasta FT scores: E(): 5.9e-19, 57.5% id in 120 aa, and to Ralstonia FT solanacearum probable 50s ribosomal subunit protein L18 FT RplR or rsc3003 or rs01087 SWALL:Q8XV28 (EMBL:AL646073) FT (118 aa) fasta scores: E(): 4.7e-26, 72.5% id in 120 aa" FT /protein_id="CAE39788.1" FT /translation="MDKKVSRLRRAVPTRRKIAQLRVHRLSVFRSNLHIYANIISPEGD FT RVLVSASTLEAEVRAQLGGAGKGGNATAAALVGKRVAEKAKAAGIELVAFDRSGFRYHG FT RVKALAEAAREAGLKF" FT misc_feature 44966..45322 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00861, Ribosomal L18p/L5e family, FT score 2.7e-39" FT CDS 45344..45868 FT /transl_table=11 FT /gene="rpsE" FT /locus_tag="BPP0048" FT /product="30S ribosomal protein S5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3633" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 30s FT ribosomal protein S5 RpsE or Spc or b3303 or z4673 or FT ecs4168 or stm3423 or sty4375 SWALL:RS5_ECOLI FT (SWALL:P02356) (166 aa) fasta scores: E(): 6.2e-36, 65.64% FT id in 163 aa, and to Ralstonia solanacearum probable 30s FT ribosomal subunit protein S5 RpsE or rsc3002 or rs01088 FT SWALL:Q8XV29 (EMBL:AL646073) (172 aa) fasta scores: E(): FT 3.1e-46, 77.19% id in 171 aa" FT /protein_id="CAE39789.1" FT /translation="MATKVQGKHAAEKENDDGLREKMIAVNRVSKVVKGGRTMSFAALS FT VVGDGDGRIGMGKGKAREVPVSVQKAMEQARRGMFKVALKNGTLHHTVVGKHGASTVLI FT SPAAEGTGVIAGGPMRAIFEVMGVRNVVAKSLGSSNPYNLVRATLNGLRASLTPAEVAA FT KRGKSVEEILG" FT misc_feature 45395..45595 FT /note="HMMPfam hit to PF00333, Ribosomal protein S5, FT N-terminal domain, score 1.1e-25" FT misc_feature 45620..45841 FT /note="HMMPfam hit to PF03719, Ribosomal protein S5, FT C-terminal domain, score 2.9e-26" FT CDS 45872..46057 FT /transl_table=11 FT /gene="rpmD" FT /locus_tag="BPP0049" FT /product="50S ribosomal protein L30" FT /note="ortholog of Bordetella pertussis (BX470248) BP3634" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50s ribosomal protein L30 RpmD or b3302 or z4672 or FT ecs4167 SWALL:RL30_ECOLI (SWALL:P02430) (58 aa) fasta FT scores: E(): 2.6e-07, 49.12% id in 57 aa, and to Ralstonia FT solanacearum probable 50s ribosomal subunit protein L30 FT RpmD or rsc3001 or rs01089 SWALL:Q8XV30 (EMBL:AL646073) (60 FT aa) fasta scores: E(): 2.6e-13, 67.24% id in 58 aa" FT /protein_id="CAE39790.1" FT /translation="MAQKQIKVTLVRSVIGTKQSHRDTIRGLGLRRINSSRVLVDTPEV FT RGMIHKVGYLVSVSEA" FT misc_feature 45881..46039 FT /note="HMMPfam hit to PF00327, Ribosomal protein L30p/L7e, FT score 3.1e-15" FT CDS 46067..46507 FT /transl_table=11 FT /gene="rplO" FT /locus_tag="BPP0050" FT /product="50S ribosomal protein L15" FT /note="ortholog of Bordetella pertussis (BX470248) BP3635" FT /note="Similar to Escherichia coli 50s ribosomal protein FT L15 RplO or b3301 SWALL:RL15_ECOLI (SWALL:P02413) (144 aa) FT fasta scores: E(): 2.4e-27, 60.56% id in 142 aa, and to FT Ralstonia solanacearum probable 50s ribosomal subunit FT protein L15 RplO or rsc3000 or rs01090 SWALL:Q8XV31 FT (EMBL:AL646073) (143 aa) fasta scores: E(): 1.5e-34, 73.42% FT id in 143 aa" FT /protein_id="CAE39791.1" FT /translation="MSDIQLNTLKPAEGSKHAKRRVGRGIGSGLGKTAGRGHKGQKSRS FT GGFHKVGFEGGQMPLQRRLPKRGFTPLGQHLYAEVRPSELQLMEAEEIDVQALKAAGVV FT GQSVRYAKVIKSGELSRKVVLRGITATAGARAAIEAAGGSLA" FT misc_feature 46076..46378 FT /note="HMMPfam hit to PF01305, Ribosomal protein L15 amino FT terminal region, score 5.3e-48" FT misc_feature 46400..46495 FT /note="HMMPfam hit to PF00256, Ribosomal protein L15, score FT 1e-05" FT CDS 46522..47847 FT /transl_table=11 FT /gene="secY" FT /gene_synonym="prlA" FT /locus_tag="BPP0051" FT /product="preprotein translocase SecY subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP3636" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 preprotein translocase SecY subunit secy or prla or FT b3300 or z4670 or ecs4165 SWALL:SECY_ECOLI (SWALL:P03844) FT (443 aa) fasta scores: E(): 7.7e-114, 66.74% id in 442 aa, FT and to Ralstonia solanacearum probable preprotein FT translocase SecY or rsc2999 or rs01096 SWALL:Q8XV32 FT (EMBL:AL646073) (448 aa) fasta scores: E(): 1.4e-134, FT 76.59% id in 440 aa" FT /protein_id="CAE39792.1" FT /translation="MAKAQALGKTGARYGDLKRRLVFLVLALVVYRLGTHIPVPGINPD FT ALADLFRQHEGGILGLFNMFSGGALSRFSIFALGIMPYISASIIMQLMSVVVPSLEALK FT KEGEAGRRKITQYTRYGTVVLALVQAVGISVALESQPGLVIDPGMLFRFTTVVTLVTGT FT MFVMWLGEQITERGLGNGISILIFAGIVAGLPSALAGLLDLVRTNSMSVLSALFIVALV FT VLVTAFVVFVERGQRKITVNYAKCQVGNKVYGGQSSHLPLKLNMAGVIPPIFASSIILF FT PATITSWFSSGERMAWLHDLAAALEPRQPLYITLYSVAIIFFCFFYTALVFNSRETADN FT LKKSGAFVPGIRPGEQTARYIDKILMRLTLAGAIYITLVCLLPEFLVMRWNVPFYFGGT FT SLLIIVVVTMDFMAQVQAYMMSHQYDSLLKKANFKGSGLPMR" FT misc_feature join(46582..46650,46744..46812,46870..46938,46966..47034, FT 47053..47121,47149..47217,47326..47394,47452..47520, FT 47611..47679,47692..47760) FT /note="10 probable transmembrane helices predicted for FT BPP0051 by TMHMM2.0 at aa 21-43, 75-97, 117-139, 149-171, FT 178-200, 210-232, 269-291, 311-333, 364-386 and 391-413" FT misc_feature 46741..46800 FT /note="PS00755 Protein secY signature 1." FT misc_feature 46741..47763 FT /note="HMMPfam hit to PF00344, eubacterial secY protein, FT score 1.1e-177" FT misc_feature 47023..47079 FT /note="PS00756 Protein secY signature 2." FT misc_feature 47047..47103 FT /note="PS00095 C-5 cytosine-specific DNA methylases FT C-terminal signature." FT CDS 47857..48075 FT /transl_table=11 FT /gene="infA" FT /locus_tag="BPP0052" FT /product="translation initiation factor IF-1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3637" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi FT translation initiation factor IF-1 InfA or b0884 or z1228 FT or ecs0969 or stm0953 or sty0951 SWALL:IF1_ECOLI FT (SWALL:P02998) (71 aa) fasta scores: E(): 5.4e-19, 74.64% FT id in 71 aa, and to Ralstonia solanacearum translation FT initiation factor IF-1 InfA1 or rsc2998 or rs01113 FT SWALL:IF11_RALSO (SWALL:Q8XV33) (72 aa) fasta scores: E(): FT 3e-26, 94.44% id in 72 aa" FT /protein_id="CAE39793.1" FT /translation="MSKDDVIQMQGEVLENLPNATFRVKLENGHVVLGHISGKMRMHYI FT RILPGDKVTVELTPYDLTRARIVFRSK" FT misc_feature 47860..48069 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00575, S1 RNA binding domain, score FT 3.4e-07" FT CDS 48110..48223 FT /transl_table=11 FT /gene="rpmJ" FT /locus_tag="BPP0053" FT /product="50S ribosomal protein l36" FT /note="ortholog of Bordetella pertussis (BX470248) BP3638" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 50s FT ribosomal protein L36 RpmJ or b3299 or z4669 or ecs4164 or FT stm3419 or sty4379 SWALL:RL36_ECOLI (SWALL:P21194) (38 aa) FT fasta scores: E(): 9e-12, 71.05% id in 38 aa, and to FT Ralstonia solanacearum probable 50s ribosomal subunit FT protein L36 RpmJ or rsc2997 or rs01115 SWALL:Q8XV34 FT (EMBL:AL646073) (38 aa) fasta scores: E(): 5.6e-14, 86.84% FT id in 38 aa" FT /protein_id="CAE39794.1" FT /translation="MKVMASVKRICRNCKVIKRHGVVRVICTDPRHKQRQG" FT misc_feature 48110..48217 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00444, Ribosomal protein L36, score FT 8.7e-16" FT misc_feature 48140..48217 FT /note="PS00828 Ribosomal protein L36 signature." FT CDS 48265..48630 FT /transl_table=11 FT /gene="rpsM" FT /locus_tag="BPP0054" FT /product="30S ribosomal protein S13" FT /note="ortholog of Bordetella pertussis (BX470248) BP3639" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 30s ribosomal protein S13 RpsM or b3298 or z4668 or FT ecs4163 SWALL:RS13_ECOLI (SWALL:P02369) (117 aa) fasta FT scores: E(): 2e-25, 60.17% id in 113 aa, and to Ralstonia FT solanacearum probable 30s ribosomal subunit protein S13 FT RpsM or rsc2996 or rs01356 SWALL:Q8XV35 (EMBL:AL646073) FT (121 aa) fasta scores: E(): 3.8e-31, 69.42% id in 121 aa" FT /protein_id="CAE39795.1" FT /translation="MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAAGVPVTKKV FT KDLTDAELERIREHIGVFAVEGDLRREVQLSIKRLIDLGTYRGMRHKRGLPVRGQRTRT FT NARTRKGPRRAAASLKK" FT misc_feature 48271..48588 FT /note="HMMPfam hit to PF00416, Ribosomal protein S13/S18, FT score 2.4e-50" FT misc_feature 48523..48564 FT /note="PS00646 Ribosomal protein S13 signature." FT CDS 48646..49047 FT /transl_table=11 FT /gene="rpsK" FT /locus_tag="BPP0055" FT /product="30S ribosomal protein S11" FT /note="ortholog of Bordetella pertussis (BX470248) BP3640" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 30s ribosomal protein S11 RpsK or b3297 or z4667 or FT ecs4162 SWALL:RS11_ECOLI (SWALL:P02366) (128 aa) fasta FT scores: E(): 1.5e-35, 73.17% id in 123 aa, and to Neisseria FT meningitidis 30s ribosomal protein S11 RpsK or nma0105 or FT nmb0166 SWALL:Q9JQR2 (EMBL:AL162752) (131 aa) fasta scores: FT E(): 8.1e-42, 86.46% id in 133 aa" FT /protein_id="CAE39796.1" FT /translation="MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNA FT LSWATSGGAGFKGSRKSTPFAAQVAAETAGRVAMEYGIKTLEVRIKGPGPGRESSVRAL FT NALGIKISSIADITPVPHNGCRPPKRRRI" FT misc_feature 48712..49041 FT /note="HMMPfam hit to PF00411, Ribosomal protein S11, score FT 9.4e-68" FT misc_feature 48946..49014 FT /note="PS00054 Ribosomal protein S11 signature." FT CDS 49059..49682 FT /transl_table=11 FT /gene="rpsD" FT /gene_synonym="ramA" FT /locus_tag="BPP0056" FT /product="30S ribosomal protein S4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3641" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 30s ribosomal protein S4 RpsD or RamA or b3296 or FT z4666 or ecs4161 SWALL:RS4_ECOLI (SWALL:P02354) (205 aa) FT fasta scores: E(): 2e-48, 64.56% id in 206 aa, and to FT Ralstonia solanacearum probable 30s ribosomal subunit FT protein S4 RpsD or rsc2994 or rs01120 SWALL:Q8XV37 FT (EMBL:AL646073) (207 aa) fasta scores: E(): 1.2e-58, 76.81% FT id in 207 aa" FT /protein_id="CAE39797.1" FT /translation="MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTS FT GARTSDYGLQLREKQKLKRMYGVLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVY FT RMGFGSTRAEARQLVSHRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESLDLA FT ASIGLPQWVEVDASKMTGTFKSAPDRADVARDVNESMVVELYSR" FT misc_feature 49059..49346 FT /note="HMMPfam hit to PF00163, Ribosomal protein S4/S9 FT N-terminal domain, score 5.2e-33" FT misc_feature 49341..49415 FT /note="PS00632 Ribosomal protein S4 signature." FT misc_feature 49347..49490 FT /note="HMMPfam hit to PF01479, S4 domain, score 4.2e-18" FT CDS 49897..50883 FT /transl_table=11 FT /gene="rpoA" FT /locus_tag="BPP0057" FT /product="DNA-directed RNA polymerase alpha chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3642" FT /note="Identical to Bordetella pertussis DNA-directed RNA FT polymerase alpha chain RpoA SWALL:RPOA_BORPE (SWALL:P37368) FT (328 aa) fasta scores: E(): 8.4e-122, 100% id in 328 aa" FT /protein_id="CAE39798.1" FT /translation="MSTQGFLKPRSIEVEPVGAHHAKIVMEPFERGYGHTLGNALRRIL FT LSSMTGYAPTEVQMTGVVHEYSTIAGVREDVVDILLNLKGVVFKLHNRDEVTLVLRKNG FT AGAVVASDIELPHDVEIINPDHLICNLTDAGKIEMQVKVEKGRGYVPGNVRALSEDRTH FT TIGRIVLDASFSPVRRVSYAVESARVEQRTDLDKLVLDIETNGVISPEEAVRQAARILM FT DQISVFAALEGAGDAYEPPVRGTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLI FT QRTENELLKTPNLGRKSLNEIKEVLAARGLTLGMKLENWPPLGLERP" FT misc_feature 49957..50571 FT /note="HMMPfam hit to PF01000, Bacterial RNA polymerase, FT alpha chain, N terminal domain, score 6.5e-104" FT misc_feature 50617..50820 FT /note="HMMPfam hit to PF03118, Bacterial RNA polymerase, FT alpha chain C terminal domain, score 1.9e-26" FT CDS 51042..51437 FT /transl_table=11 FT /locus_tag="BPP0058" FT /product="50S ribosomal protein L17" FT /note="ortholog of Bordetella pertussis (BX470248) BP3643" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50s ribosomal protein L17 RplQ or b3294 or z4664 or FT ecs4159 SWALL:RL17_ECOLI (SWALL:P02416) (127 aa) fasta FT scores: E(): 9.6e-32, 68.5% id in 127 aa, and to Neisseria FT meningitidis 50s ribosomal protein L17 nmb0169 SWALL:Q9K1I1 FT (EMBL:AE002374) (122 aa) fasta scores: E(): 4.7e-35, 75.41% FT id in 122 aa" FT /protein_id="CAE39799.1" FT /translation="MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELR FT RVIEPLITLGKEPTLANKRLAFARLRDRDAVVKLFAEIGPRYANRNGGYTRVLKMGFRQ FT GDNAPMAFMELVDRPEVDASEADSDAE" FT misc_feature 51099..51389 FT /note="HMMPfam hit to PF01196, Ribosomal protein L17, score FT 4.3e-57" FT misc_feature 51141..51209 FT /note="PS01167 Ribosomal protein L17 signature." FT CDS complement(51566..52003) FT /transl_table=11 FT /locus_tag="BPP0059" FT /product="histidine triad protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3644" FT /note="Similar to Halobacterium sp. histidine triad protein FT Hit1 or vng2186G SWALL:Q9HNA0 (EMBL:AE005106) (142 aa) FT fasta scores: E(): 6.5e-11, 38.73% id in 111 aa, and to FT Salmonella typhimurium putative diadenosine tetraphosphate FT Stm3167 SWALL:Q8ZM04 (EMBL:AE008845) (151 aa) fasta scores: FT E(): 1.2e-10, 34.74% id in 118 aa" FT /protein_id="CAE39800.1" FT /translation="MSHDCLFCRISREEIPAHVIHQDSRLLAFLDIHPVRPGHVLIIPR FT QHYPYFEDMPADLAGHILNLGQRLARHMKRLYSVERVGFAFTGIHVAHAHAHLIPMHHP FT QDVTSTQYIEQKDLTFVMPPQSPPEQLASVAQDLRAALTKA" FT misc_feature complement(51680..52000) FT /note="HMMPfam hit to PF01230, HIT family, score 2.5e-13" FT CDS 52110..52451 FT /transl_table=11 FT /gene="cutA" FT /gene_synonym="cycY" FT /gene_synonym="cutA1" FT /locus_tag="BPP0060" FT /product="putative periplasmic divalent cation tolerance FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3645" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 periplasmic divalent cation tolerance protein CutA FT or CycY or CutA1 or b4137 or z5742 or ecs5118 FT SWALL:CUTA_ECOLI (SWALL:P36654) (112 aa) fasta scores: E(): FT 1.1e-10, 38.54% id in 96 aa, and to Methanopyrus kandleri FT uncharacterized protein implicated in tolerance to divalent FT cations CutA or mk1492 SWALL:AAM02705 (EMBL:AE010440) (102 FT aa) fasta scores: E(): 1.7e-15, 50% id in 100 aa" FT /protein_id="CAE39801.1" FT /translation="MLRDDDVVLVISNAPDMLLAKRMAHVLVEDGLAACVNLGAPVLSV FT YRWKGEVEGADEIPLWIKTTYARHQAVVQTLAQLHPYEVPEIIVLPVIGGIASYLDWVR FT EQSSGVDSQ" FT misc_feature 52128..52433 FT /note="HMMPfam hit to PF03091, CutA1 divalent ion tolerance FT protein, score 1e-26" FT CDS 52462..54399 FT /transl_table=11 FT /locus_tag="BPP0061" FT /product="thiol:disulfide interchange protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3646" FT /note="Similar to Pseudomonas aeruginosa thiol:disulfide FT interchange protein precursor DsbB1 or DipZ or pa4845 FT SWALL:DSD1_PSEAE (SWALL:Q9HUW5) (591 aa) fasta scores: E(): FT 4e-53, 41.54% id in 609 aa, and to Ralstonia solanacearum FT thiol:disulfide interchange protein dsbd precursor DsbD or FT rsc2990 or rs01128 SWALL:Q8XV41 (EMBL:AL646073) (608 aa) FT fasta scores: E(): 2.6e-76, 50.48% id in 618 aa" FT /protein_id="CAE39802.1" FT /translation="MMQYGHASATGHGASATGRAAAAGRWLAWMLALALVLFARPAAAL FT TEDDFLPPEQAFVFSAAMADPATLVLNYRIAPEYYMYRERFGLSASPAQAVTLGEAAYP FT QGKVKYDPTFDKDMEVFYGTVAVRVPLSQGNGQPFTLTVTSQGCADAGLCYPPMDNTVQ FT LTPVAGGYALAAGTASAPQGGGTFDSLLEAGDTRLADFIGGGGWLKTAGVFLLLGMLLA FT FTPCVLPMVPILSSIVLGGAQAQRPSRWRGLGLAAAYVFGMSVVYTALGVAAGLSGAGL FT AAWLQTPWILSLFAILLAVLALAMFGAFTFQMPAGLQARLSERSNRIPGGRVTGALVMG FT ALSALIVGPCVAAPLAGALLYISQTGDVILGGAALFAMAWGMGIPLLLVGASAGTLLPR FT TGPWMESVKRVFGMLLLGTAWWMLIPVVPTWVQMLGWSFLAVVGAVMLRAFDALPAGSG FT APRMFAKGLGLLLALAGAAWLIGALSGGRDVLAPLSHLAARAPAGGAVAAAGPAAVDKT FT RFVRVRSNAELDALLARSTQPVMLDFYADWCVSCREMEHFTFSDPTVAARMSQMLLVQA FT DVTKNNADDRALLKRFRLFGPPGIMFFEPGGKLIEDIRVVGFQDARRFAGVLEQVADRS FT GAPGPAQAGS" FT misc_feature join(52522..52590,53110..53178,53215..53283,53326..53394, FT 53467..53535,53563..53631,53689..53748,53758..53811, FT 53848..53916) FT /note="9 probable transmembrane helices predicted for FT BPP0061 by TMHMM2.0 at aa 21-43, 217-239, 252-274, 289-311, FT 336-358, 368-390, 410-429, 433-450 and 463-485" FT misc_feature 53101..53733 FT /note="HMMPfam hit to PF02683, Cytochrome C biogenesis FT protein transmembrane region, score 2.9e-06" FT misc_feature 54079..54135 FT /note="PS00194 Thioredoxin family active site." FT CDS 54440..55477 FT /transl_table=11 FT /locus_tag="BPP0062" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3647" FT /note="Similar to Bacillus halodurans hypothetical protein FT Bh1741 SWALL:Q9KC33 (EMBL:AP001513) (306 aa) fasta scores: FT E(): 9.7e-23, 33.21% id in 283 aa, and to Listeria FT monocytogenes hypothetical protein Lmo0495 SWALL:Q8Y9N0 FT (EMBL:AL591975) (319 aa) fasta scores: E(): 2.8e-23, 30.58% FT id in 291 aa" FT /protein_id="CAE39803.1" FT /translation="MGERLVRCCPYQPRRRDPVASHPSSHYVSTAIASPANVGRVYLQL FT LLVMAAWGVNLVAVKYLTFHMDVQVVAAVRIVVAFVAVSAILLWRLHGVPRLSLRQFGW FT LACAGLLVVYAHQILLVNALRLTPAANATLIMATSPLFSVVLAAFFYRERLTASRIGGA FT ALGLGGVALVVAGGDGVLASVGRGDVLALCAVIVFVIGGLIIQRVSRALDPLTILWYMY FT LVGAVTLSAHAAFSPATYLASSWTLEPWPWLVVLFSSVIASGVSNLLWNAGIARLGMSR FT AAMFVNWLPIFGLLAAAVFLGERITALHFAGLACVLSGTWLGLRTAPAPAAGQADARPA FT RARRA" FT misc_feature join(54560..54628,54641..54709,54743..54811,54824..54892, FT 54917..54985,54998..55066,55085..55144,55187..55255, FT 55289..55342,55352..55411) FT /note="10 probable transmembrane helices predicted for FT BPP0062 by TMHMM2.0 at aa 41-63, 68-90, 102-124, 129-151, FT 160-182, 187-209, 216-235, 250-272, 284-301 and 305-324" FT misc_feature 54587..54964 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 8.9e-21" FT misc_feature 55025..55414 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 6.4e-19" FT CDS complement(55474..56490) FT /transl_table=11 FT /gene="hemB" FT /locus_tag="BPP0063" FT /product="putative delta-aminolevulinic acid dehydratase" FT /EC_number="4.2.1.24" FT /note="ortholog of Bordetella pertussis (BX470248) BP3648" FT /note="Similar to Pseudomonas aeruginosa FT delta-aminolevulinic acid dehydratase HemB or Pa5243 FT SWALL:HEM2_PSEAE (SWALL:Q59643) (337 aa) fasta scores: E(): FT 6.4e-78, 65.15% id in 330 aa, and to Ralstonia solanacearum FT probable delta-aminolevulinic acid dehydratase protein HemB FT or rsc2989 or rs01152 SWALL:Q8XV42 (EMBL:AL646073) (331 aa) FT fasta scores: E(): 5.4e-96, 78.35% id in 328 aa" FT /protein_id="CAE39804.1" FT /translation="MKPQIISAAFPVSRPRRLRRDDFTRRLVRENTLTANDLIYPVFVT FT EGKGIQQAVPSLPGVVRYSLDTLLPVAEQCVKLGIPVLSLFPAIEPALKTPDGIEAANP FT EGLIPRVVGELKKRFPELGVLTDVALDPYTSHGQDGVIDPAGYVLNEPTVEILIKQALV FT QAAAGVDIVAPSDMMDGRIGAIRQALEDQQHIHTRIMAYSAKYASAFYGPFRDAVGSAS FT NLGKSDKMAYQMDPGNIDEALREVAADLQEGADMVMVKPGMPYLDVVRRVKDAFRVPTF FT AYQVSGEYAMIKAAAANGWLDHDKVMMEALLGFKRAGADGVLTYFALEAATLLQQQR" FT misc_feature complement(55486..56478) FT /note="HMMPfam hit to PF00490, Delta-aminolevulinic acid FT dehydratase, score 7.5e-194" FT misc_feature complement(55696..55734) FT /note="PS00169 Delta-aminolevulinic acid dehydratase active FT site." FT CDS complement(56487..57110) FT /transl_table=11 FT /locus_tag="BPP0064" FT /product="putative GTP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3649" FT /note="Similar to Pseudomonas aeruginosa probable FT GTP-binding protein EngB or pa5492 SWALL:ENGB_PSEAE FT (SWALL:Q9HT81) (215 aa) fasta scores: E(): 3.7e-26, 44.39% FT id in 205 aa, and to Ralstonia solanacearum probable FT GTP-binding protein Rsc2988 or Rs01211 SWALL:Q8XV43 FT (EMBL:AL646073) (234 aa) fasta scores: E(): 4.7e-35, 49.76% FT id in 215 aa" FT /protein_id="CAE39805.1" FT /translation="MSLLHRASFYISAARLDQLPPAGAPEVCFVGRSNAGKSSAINVLC FT NQRRLAFSSKTPGRTRLINMFGLPDPLAPGEQLGFLVDLPGYGYASVAHREKEKWADIL FT GGYLRDRASLAGIVLLIDIRRGVTDLDRRLTNFIAPTGRPVLALLTKADKLPYGQRMRT FT VFAVRKDLADIGALHMVPFSSTERIGLEEAGAHIENWISPKVVP" FT misc_feature complement(56997..57020) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 57334..58035 FT /transl_table=11 FT /locus_tag="BPP0065" FT /product="putative cytochrome C precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3650" FT /note="Similar to Azotobacter vinelandii cytochrome C4 FT precursor CycA SWALL:CYC4_AZOVI (SWALL:P43302) (210 aa) FT fasta scores: E(): 5.7e-18, 40.2% id in 194 aa, and to FT Ralstonia solanacearum probable oxidoreductase cytochrome FT C-type signal peptide protein rsc2987 or rs01225 FT SWALL:Q8XV44 (EMBL:AL646073) (219 aa) fasta scores: E(): FT 4.5e-20, 45.92% id in 233 aa" FT /protein_id="CAE39806.1" FT /translation="MKRVLSRMLVASGLVLGASVHSMSFAADGAAGPAKPDAAKGAQLY FT DQGDASRGVIACASCHGAAGSSTIPANPNLAAQPHEYLVKQLTEFKVKEGEKLPLRMGP FT GGNPTPMTAMAQPLTAQDMQNVALYLSQPPLKEPATAGHENLVELGQKIWRGGLADRNV FT PACAACHGATGAGIPGQYPRLSGQFSSYIEEQLKLFRSGERGNSVPMHDIADRMSDADI FT KAVADYAAGLR" FT misc_feature 57334..57411 FT /note="Signal peptide predicted for BPP0065 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.914 between residues 26 and 27" FT misc_feature 57439..57735 FT /note="HMMPfam hit to PF00034, Cytochrome c, score 0.00018" FT misc_feature 57502..57519 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 57799..58029 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00034, Cytochrome c, score 0.18" FT misc_feature 57829..57846 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 58153..60249 FT /transl_table=11 FT /locus_tag="BPP0066" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3651" FT /note="Similar to Ralstonia solanacearum putative FT cytochrome c-type biogenesis transmembrane protein rsc2986 FT or rs01235 SWALL:Q8XV45 (EMBL:AL646073) (700 aa) fasta FT scores: E(): 9.2e-84, 46.53% id in 692 aa, and to Neisseria FT meningitidis cytochrome c-type biogenesis protein, putative FT nmb1804 SWALL:Q9JY04 (EMBL:AE002530) (671 aa) fasta scores: FT E(): 2.6e-47, 37.98% id in 695 aa" FT /protein_id="CAE39807.1" FT /translation="MNATSTAPSSRHTLRSLAGDVFELLGSMRFAVSLLMFICIASIVG FT TVLAQNRPSNVYVDQFGPFWFEVFDKFSIWHVYNSWWFLLIMTFLVVSTSVCLIRNTPK FT MLREARSFREHVRASSLRAFPHRLQTEVAQPVSETAQGVTGLLGQFGYAVRERRDGDGI FT MLAAKKGSANRLGYIFAHSAMVIICIGGLLDSEAPVRLQVLFDGKQPIAINGEMARADI FT PDSALLSVNNPSYRANLWVPEGSNASLATIAVNDRSLVQPLPFSLRLKKFTVDYYSTGM FT PSRFLSLVEVTDPETGEMFDQTIEVNEPLRYKGVTVYQSSFDDGGSSVSLTGYPLVGAG FT DTPFKVDGVVGQTSEIGARIGDQPKSMKIEFTALRVINVEDFSGGQPGAQNLSLREHVA FT SVAGSAAGKKNENLRNVGPRIDYKLIDDAGQAHEFQNYMLPVVLDGVPVFLSAVRNNPA FT DDFQYLRIPADDQGSLAEFMRLRAALADPAARQEAARRFAERNAPSGTDRQPLETAAQR FT ALATFAEGGLQAIADFLQANTAPDDLERAAGIVVRLVGASVAELRDIARARAGLPALPQ FT SGPQADEAAQWSRVAVAALSDLAFYPAPVMFSLTDFQERQGSVFQVARTPGKNAVYLGC FT VLLILGIFAMFYIRDRRVWVWVKPAADGAGSSIEAAMTSQKRTLDFNQEFDRLREALLR FT QSKP" FT misc_feature join(58240..58299,58381..58449,58675..58731,60040..60096) FT /note="4 probable transmembrane helices predicted for FT BPP0066 by TMHMM2.0 at aa 30-49, 77-99, 175-193 and FT 630-648" FT CDS 60259..61593 FT /transl_table=11 FT /locus_tag="BPP0067" FT /product="putative cytochrome c asssembly protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3652" FT /note="Similar to Neisseria meningitidis cytochrome c-type FT biogenesis protein, putative nmb1803 SWALL:Q9JY05 FT (EMBL:AE002530) (395 aa) fasta scores: E(): 1.3e-42, 48.81% FT id in 422 aa" FT /protein_id="CAE39808.1" FT /translation="MSSTTSNSAAAWTSGFSPTGDGRAQRGRPDWTDIAFFLLLAAGAG FT FALTRFSGAMDYYEKLILCGTVPALAWLGWLWRPLRHLMIACALAAGLALLLYQNDLAR FT AEQVFFLKYLLSSQSAILWMSALFVLAMLCYWIGILSPTAAWLGTALTWGAVFAGTTGL FT LVRWREGHLMGPDLGHIPVSNLYEVFVLFALITALFYLYYERKYATRALGGFVLLVITS FT ATIFLLWYSFTRDAGQIQPLVPALKSWWMKLHVPANFIGYGTFSLAAMVGFAYLVKQHG FT QTTSWLKLAPLFVLGVALCVEPIVFRTEGLSATWMIYCGAGVVIVGGILLARARIAQAL FT PSLEVLDDIMYRAIAIGFAFFTVATVLGALWAADAWGAYWQWDPKETWALIVWLNYAAW FT LHMRLIKGLRGTMAAYWSLVGLLITGFAFLGVNMFLSGLHSYGEL" FT misc_feature join(60358..60417,60427..60486,60505..60558,60616..60675, FT 60694..60753,60796..60864,60889..60957,61021..61089, FT 61108..61176,61189..61257,61318..61377,61420..61473, FT 61492..61560) FT /note="13 probable transmembrane helices predicted for FT BPP0067 by TMHMM2.0 at aa 34-53, 57-76, 83-100, 120-139, FT 146-165, 180-202, 211-233, 255-277, 284-306, 311-333, FT 354-373, 388-405 and 412-434" FT misc_feature 60838..61515 FT /note="HMMPfam hit to PF01578, Cytochrome C assembly FT protein, score 8.1e-13" FT CDS complement(61664..62953) FT /transl_table=11 FT /gene="lysA" FT /locus_tag="BPP0068" FT /product="diaminopimelate decarboxylase" FT /EC_number="4.1.1.20" FT /note="ortholog of Bordetella pertussis (BX470248) BP3653" FT /note="Similar to Pseudomonas aeruginosa diaminopimelate FT decarboxylase LysA or pa5277 SWALL:DCDA_PSEAE FT (SWALL:P19572) (415 aa) fasta scores: E(): 2.4e-93, 62.8% FT id in 414 aa, and to Vibrio cholerae diaminopimelate FT decarboxylase LysA or vc0125 SWALL:DCDA_VIBCH FT (SWALL:Q9KVL7) (417 aa) fasta scores: E(): 1.7e-92, 59.28% FT id in 420 aa" FT /protein_id="CAE39809.1" FT /translation="MTAVSVQPDLAGSPHFRYQNGVLHAEDVPLDSLAAQLGTPLYVYS FT RAALRSAWETYRDAIGERPVLVCFGMKANSNLAVLKEFARLGAGFDIVSGGELARVLAV FT GGDPAKVVFSGVGKQAWEMRAALEADVKCFNVESEAELERLSDVAVSMGRRARVSLRVN FT PDVDAQTHPYISTGLKENKFGIAIESAPAAYRLAARLPGVEVVGVDCHIGSQLTDISPY FT FDALEKLLDLIEQLAENGIAIKHLDLGGGLGIRYTDEIPPSPKALLDRVFERINARGLG FT HLHIVLEPGRSLVGNAGVLLTTVQYLKHAEARNFAIVDAAMNDLLRPALYEAYHGVQPV FT TPRADKRIEYDVVGPVCESADWLARGRALAIQAGDVLAVESAGAYSMVMASNYNTRVRA FT AEVMVDGNRHYIVRQRETLESLYQGESTLP" FT misc_feature complement(61739..62059) FT /note="HMMPfam hit to PF00278, Pyridoxal-dependent FT decarboxylase, C-terminal sheet domain, score 8.9e-30" FT misc_feature complement(62066..62821) FT /note="HMMPfam hit to PF02784, Pyridoxal-dependent FT decarboxylase, pyridoxal binding domain, score 6e-93" FT misc_feature complement(62195..62236) FT /note="PS00879 Orn/DAP/Arg decarboxylases family 2 FT signature 2." FT CDS 63167..63496 FT /transl_table=11 FT /gene="cyaY" FT /locus_tag="BPP0069" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3654" FT /note="Similar to Escherichia coli CyaY protein or b3807 FT SWALL:CYAY_ECOLI (SWALL:P27838) (106 aa) fasta scores: E(): FT 1.1e-12, 37.03% id in 108 aa, and to Ralstonia solanacearum FT CyaY protein or rsc2977 or rs01320 SWALL:CYAY_RALSO FT (SWALL:Q8XV54) (113 aa) fasta scores: E(): 5.4e-17, 50.46% FT id in 107 aa" FT /protein_id="CAE39810.1" FT /translation="MTETEFLALVDQVLDSIESQADDWAAGLDVDIEATRSGNVLTLVF FT EDGTQVVVNAQAAMQELWVAARSGGFHYRYDGQHWNDTRGGPRLPDALSQICSEAAGVP FT VSVRL" FT misc_feature 63167..63490 FT /note="HMMPfam hit to PF01491, Frataxin-like domain, score FT 2.3e-25" FT CDS complement(63553..65997) FT /transl_table=11 FT /locus_tag="BPP0070" FT /product="penicillin-binding protein 1A" FT /EC_number="2.4.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3655" FT /note="Similar to Escherichia coli penicillin-binding FT protein 1A MrcA or PonA or b3396 SWALL:PBPA_ECOLI FT (SWALL:P02918) (850 aa) fasta scores: E(): 2.2e-84, 37.45% FT id in 841 aa, and to Ralstonia solanacearum probable FT penicillin-binding 1 MrcA or rsc2976 or rs01357 FT SWALL:Q8XV55 (EMBL:AL646073) (801 aa) fasta scores: E(): FT 1.5e-161, 53.19% id in 782 aa" FT /protein_id="CAE39811.1" FT /translation="MSKRQNSTKQDKPAKSGSAILRFFLKAGIFFGGLALCGVLLAGMA FT LALAWPNLPDLHAMTDYRPRVPLRVYTADRVLIGEFGEERRNVLRFNEIPDVMKSAVLA FT AEDDRFYQHGGIDWMGVIRAGLTNLISMSKSQGASTITMQVARNFYLSSEKTYSRKFYE FT LLLTFKIESQLTKDQILELYMNQIYLGHRAYGFAAASRTYFGKPLSQVTPSEAAMLAGI FT PKAPSRFNPISNRPRAELRQRYVLGRMYSLGYLTEPEYKEAMAQPIVIKSAEGTPAGGY FT AIHGEYVAELARQLLYNVYQDNLYSRGINIYTTVQSKDQESAYRAVRDGVLEYTRRAPY FT PGPEEQLDMPAGVENDPQALDEFLDGVFDKFSDSGDLLTAVVLSASPTEIKLVRSSREV FT ISITDKKALGVVARALTDKAKPEMRLKRGSVVYIHKYNDNWEVINMPAVQAAFVALSPQ FT DGAIRAMVGGFDFYRGNFNRVTQAWRQPGSNIKPFIYAASLERGLTPATQISDQPFELS FT AAQTGSKAWHPKNYGNQYEPMLTMRQGLYKSKNMVSIRILQAIGPQYAQDYLTRFGFDK FT ARQPAVLPLALGAGSVTPLQLAGAYAVFANGGYRITPYLIDRVTDSSGKVLMQSRPVIA FT GDAAARAIDARTAFVMDDMLRGVATSGTAARARATLKRSDVAGKTGTTNESVDAWFSGY FT TPSLVATAWLGFDQPKSLGSRETGGGVAMPIWLDYMKDALKGVPEEKQRPRPDGLLVEN FT GELYFSEFPPGQAVARLGLPQAGDALGDFLNGLTGGNDNSIRVAPGVGTQGSQPWSQNI FT PF" FT misc_feature complement(63814..64785) FT /note="HMMPfam hit to PF00905, Penicillin binding protein FT transpeptidase domain, score 1.6e-28" FT misc_feature complement(65290..65796) FT /note="HMMPfam hit to PF00912, Transglycosylase, score FT 5e-89" FT misc_feature complement(65857..65997) FT /note="Signal peptide predicted for BPP0070 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.985) with cleavage site FT probability 0.675 between residues 56 and 57" FT CDS 66111..66746 FT /transl_table=11 FT /gene="aroK" FT /locus_tag="BPP0071" FT /product="shikimate kinase I" FT /EC_number="2.7.1.71" FT /note="ortholog of Bordetella pertussis (BX470248) BP3656" FT /note="Similar to Escherichia coli shikimate kinase I AroK FT or b3390 SWALL:AROK_ECOLI (SWALL:P24167) (172 aa) fasta FT scores: E(): 5.3e-23, 45.78% id in 166 aa, and to Ralstonia FT solanacearum probable shikimate kinase I AroK or rsc2970 or FT rs01327 SWALL:Q8XV61 (EMBL:AL646073) (190 aa) fasta scores: FT E(): 2e-32, 59.75% id in 164 aa" FT /protein_id="CAE39812.1" FT /translation="MNASANLCAASANDPQPGDQEAAHPVACAGDEPAAFLPHDLPIFL FT VGMMGAGKTTIGRGLARALRREFIDLDHELEARCGVRVPVIFEIEGEAGFRRREAAALQ FT ECTQRRQIILATGGGAVLAAENRQALRERGIVIYLRASVEELFRRTSRDRNRPLLATAD FT PRATLRELMVAREPLYNEVADLVIDTGSMPIATLVKSLLPKLQAYEKK" FT misc_feature 66231..66728 FT /note="HMMPfam hit to PF01202, Shikimate kinase, score FT 1.1e-59" FT misc_feature 66249..66272 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 66396..66473 FT /note="PS01128 Shikimate kinase signature." FT CDS 66746..67822 FT /transl_table=11 FT /gene="aroB" FT /locus_tag="BPP0072" FT /product="3-dehydroquinate synthase" FT /EC_number="4.2.3.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3657" FT /note="Similar to Escherichia coli 3-dehydroquinate FT synthase AroB or b3389 SWALL:AROB_ECOLI (SWALL:P07639) (362 FT aa) fasta scores: E(): 1.4e-64, 53.33% id in 345 aa, and to FT Neisseria gonorrhoeae 3-dehydroquinate synthase AroB FT SWALL:AROB_NEIGO (SWALL:O50468) (359 aa) fasta scores: E(): FT 1.6e-69, 54.34% id in 357 aa" FT /protein_id="CAE39813.1" FT /translation="MDVVEVATPGGSYPIHIGPGRLDALDASIPADATAIAVVTNPTVA FT GLYGARVEAALARTGKRVLRIELPDGEAHKDWQTLNLIFDALLENRLDRRAVLVALGGG FT VIGDMTGFAAAVYMRGIRFVQVPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQPVAVE FT IDTEVLGTLPAREVSAGLAEVIKYGLILDAGFWQWCEDNVGALRALEPRALAYAIRRSC FT ELKAQVVGQDERESGLRAILNLGHTFGHAIESGLGYGEWLHGEAVGCGMVQAAELSTLA FT AGFPAADVQRVRDLVREIGCPTVAPDLGAERWLALMQVDKKTEGGEIRFVLMPRIGQAL FT SRAAPEADVRTALERTTR" FT misc_feature 66791..67807 FT /note="HMMPfam hit to PF01761, 3-dehydroquinate synthase, FT score 5e-168" FT misc_feature 67031..67099 FT /note="1 probable transmembrane helix predicted for BPP0072 FT by TMHMM2.0 at aa 96-118" FT misc_feature 67223..67243 FT /note="PS00307 Legume lectins beta-chain signature." FT CDS 67819..68973 FT /transl_table=11 FT /locus_tag="BPP0073" FT /product="putative phosphohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3658" FT /note="Similar to Escherichia coli FT deoxyguanosinetriphosphate triphosphohydrolase Dgt or b0160 FT SWALL:DGTP_ECOLI (SWALL:P15723) (504 aa) fasta scores: E(): FT 0.00035, 25.37% id in 469 aa, and to Ralstonia solanacearum FT deoxyguanosinetriphosphate triphosphohydrolase-like protein FT rsc2968 or rs01329 SWALL:Q8XV63 (EMBL:AL646073) (387 aa) FT fasta scores: E(): 1.1e-97, 69.43% id in 373 aa" FT /protein_id="CAE39814.1" FT /translation="MNKDGTVVLMNELASYASDPSKTRGRRHSEPPPENRTEFQRDRDR FT IIHSNAFRRLEYKTQVFVNHEGDLFRTRLTHSLEVAQIARTLARSLRVSEDLTEAIALA FT HDLGHTPFGHAGQDELNACMRELAPQAGGFEHNLQSLRVVDELEERYAEFNGLNLCFET FT REGILKHCSATHARQLGAVGERFLDRTQPSLEAQLANLADEVAYNNHDVDDGLRSGLIT FT LEQLQEVGIFARHYAEVARRYPQLAPRRATSETIRRMINTLIVDLTATSLARIRDHAPA FT SADDVRRAPPLAGFSAAVRREADELKKFLFDNLYRHYRVVRMTTKVQRIVRELFQAFLG FT DPRLLPPDYRREQPQDQARAISDYIAGMTDRYAIREHRRLFEMG" FT misc_feature 68035..68442 FT /note="HMMPfam hit to PF01966, HD domain, score 4e-14" FT CDS complement(join(69147..69530,69533..69808)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0074" FT /product="putative glutathione S-transferase (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3659" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 92. Similar to Dianthus FT caryophyllus glutathione s-transferase 1 Gst1 or carsr8 FT SWALL:GTZ1_DIACA (SWALL:P28342) (221 aa) fasta scores: E(): FT 2.4e-07, 31.6% id in 174 aa, and to Rhizobium meliloti FT putative glutathione s-transferase protein Gst8 or r03265 FT or smc03882 SWALL:Q92L24 (EMBL:AL591793) (215 aa) fasta FT scores: E(): 2.4e-35, 50.23% id in 211 aa" FT /db_xref="PSEUDO:CAE39815.1" FT variation complement(69533..69544) FT /note="(GC)6 in parapertussis; (GC)5 in pertussis and FT bronchiseptica" FT misc_feature complement(69581..69808) FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal domain, score 2.2e-08" FT CDS complement(69864..72722) FT /transl_table=11 FT /gene="uvrA" FT /locus_tag="BPP0075" FT /product="excinuclease ABC subunit A" FT /note="ortholog of Bordetella pertussis (BX470248) BP3660" FT /note="Similar to Haemophilus influenzae excinuclease ABC FT subunit A UvrA or hi0249 SWALL:UVRA_HAEIN (SWALL:P44410) FT (943 aa) fasta scores: E(): 0, 64.91% id in 949 aa, and to FT Escherichia coli excinuclease ABC subunit A UvrA or DinE or FT b4058 SWALL:UVRA_ECOLI (SWALL:P07671) (940 aa) fasta FT scores: E(): 0, 65.12% id in 949 aa" FT /protein_id="CAE39816.1" FT /translation="MDAIRIRGARTHNLKNVSLDLPRHQLVVVTGLSGSGKSSLAFDTL FT YAEGQRRYVESLSAYARQFLQLMDKPDVDLIEGLSPAISIEQKSAGHNPRSTVGTITEI FT HDYLRLLYARVGTPYCPDHGLPLQAQSVGQMVDAVLAWPAEARLAVLAPIARARKGSFE FT DELASLQAQGFVRLRVDGQLQEIEQLPALKKTEKHDLDVVIDRLRIRPESQQRLAESFE FT TALQLAEGRAIALDMDSGREQVFSSRYACPICSHSLAELEPRLFSFNNPMGACPGCDGI FT GQVGFFDPKRVVAFPELSLAAGAIRGWDRRNSFTHSLLTSLATHYEFDIDTPFEELPAE FT VREKVLHGSGEEEIAFFYVNEKGRSTVKRHPFEGVIPNLERRWRETDSATVREELGKYR FT NIKTCPDCGGSRLRPEARNVLIGSEPREGERHGQAIFEVESMPLSVCLDWFRQLQLTGA FT KQEIAQRIVREIEARLSFLNNVGLNYLSLDRSADTISGGEAQRIRLASQIGSGLTGVMY FT VLDEPSIGLHQRDNDRLIGTLQHLRDLGNSVIVVEHDEDMIRCADWVVDMGPGAGEHGG FT QVVAQGTPEAVQTDQQSLTGQYLSGARAIEIPARRPVADDQPWLHLSGATGNNLKSVDL FT RIPAARLVCVTGVSGSGKSTLVNDTLAVALARQLNHAQGEPAPYAGLAGLEHFDKTISV FT DQSPIGRTPRSNPATYTGLFTPIRELFAGVPEARARGYDPGRFSFNVKGGRCEACQGDG FT VVKVEMHFLPDMYVPCDVCHGKRYNRETLEIRYRGRNISEVLDLTVEQALEYFESVPAI FT ARKLHTLIDVGLSYIRLGQSATTLSGGEAQRVKLSLELSRRSTGRTLYILDEPTTGLHF FT HDIELLLKVLNQLVDSGNTVLIIEHNLDVIKTADWLVDMGPEGGDGGGRVVAQGTPEQV FT AASPDSHTGHYLGRVLRNGKRR" FT misc_feature complement(69990..70805) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1e-27" FT misc_feature complement(70173..70217) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(70401..70418) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(70761..70784) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(71013..71675) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 4.4e-06" FT misc_feature complement(71199..71243) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(72609..72632) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 72878..74062 FT /transl_table=11 FT /locus_tag="BPP0076" FT /product="putative transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3661" FT /note="Similar to Escherichia coli tetracycline resistance FT protein, class c TetA SWALL:TCR3_ECOLI (SWALL:P02981) (396 FT aa) fasta scores: E(): 8.8e-11, 27.04% id in 392 aa, and to FT Ralstonia solanacearum putative multidrug-efflux FT transporter transmembrane protein rsc0421 or rs03389 FT SWALL:Q8Y2B5 (EMBL:AL646059) (387 aa) fasta scores: E(): FT 6.1e-67, 52.48% id in 383 aa" FT /protein_id="CAE39817.1" FT /translation="MPADQKLQLTRSERRASVALAGLFACRMLGLFLLLPVFAVAARDL FT PGGNDPARVGLALGMYGLTQAFMQIPFGLASDRWGRRPVVVAGLVLFIIGSVVCALADD FT VYWITLGRAIQGAGAISAAVTAWLADATRDEVRTRAMAMVGGLIGLSFAVSLVAAPVLV FT GWWGLSGLFWTIACLGLASLAVARWMVPVVPRTEARTMQGASARAVLLHADLLRLNFGV FT FVLHLIQVALFVVTPSLLARLGGLDARDLWRVYLPVILVSFVLMVPAVFVAEKRRAHRA FT ALRAAVAGLIVVCALLPLAAHGFYALALALTGFFVAFNILEALQPSLVSRVAPAQYKGL FT ALGFYNTAQAAGLFAGGALGGWLAASGGADAVYIAAAALAALWLAVTWALRPLR" FT misc_feature 72878..73000 FT /note="Signal peptide predicted for BPP0076 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.975) with cleavage site FT probability 0.391 between residues 41 and 42" FT misc_feature join(72926..72994,73037..73105,73124..73183,73193..73261, FT 73295..73363,73391..73459,73520..73588,73631..73699, FT 73718..73777,73787..73840,73901..73969,73979..74047) FT /note="12 probable transmembrane helices predicted for FT BPP0076 by TMHMM2.0 at aa 17-39, 54-76, 83-102, 106-128, FT 140-162, 172-194, 215-237, 252-274, 281-300, 304-321, FT 342-364 and 368-390" FT misc_feature 72929..74056 FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 0.0021" FT CDS 74295..74783 FT /transl_table=11 FT /gene="ssb" FT /locus_tag="BPP0077" FT /product="single-strand binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3662" FT /note="Similar to Proteus mirabilis single-strand binding FT protein Ssb SWALL:SSB_PROMI (SWALL:P28046) (173 aa) fasta FT scores: E(): 1.9e-26, 56.47% id in 170 aa, and to Serratia FT marcescens single-strand binding protein Ssb FT SWALL:SSB_SERMA (SWALL:P25762) (175 aa) fasta scores: E(): FT 1.2e-24, 55.49% id in 173 aa" FT /protein_id="CAE39818.1" FT /translation="MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASG FT ERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEGRLKTRKWQDKDTGADRYSTEIVAD FT QMQMLGGRDSGGGYGGGYDDAPRQQRAPAQRPAAAPQRPAPQAAPAANLADMDDDIPF" FT misc_feature 74304..74342 FT /note="PS00735 Single-strand binding protein family FT signature 1." FT misc_feature 74304..74624 FT /note="HMMPfam hit to PF00436, Single-strand binding FT protein family, score 2.3e-61" FT misc_feature 74445..74474 FT /note="PS00736 Single-strand binding protein family FT signature 2." FT misc_feature complement(74832..74838) FT /note="duplication due to IS1001 insertion" FT repeat_region 74839..74851 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT repeat_region complement(74839..75000) FT CDS complement(74842..76062) FT /transl_table=11 FT /locus_tag="BPP0078" FT /product="transposase" FT /note="transposase for IS1001 element" FT /protein_id="CAE39819.1" FT /translation="MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCE FT QCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVT FT DRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFA FT LHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYEL FT EIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNR FT DNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGI FT AALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRA FT AFPGNAR" FT misc_feature complement(74983..75972) FT /note="HMMPfam hit to PF01610, Transposase, score 7.9e-128" FT repeat_region complement(75001..76145) FT repeat_region complement(76133..76145) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT misc_feature complement(76146..76152) FT /note="duplication due to IS1001 insertion" FT CDS 76330..78444 FT /transl_table=11 FT /gene="bfrC" FT /locus_tag="BPP0079" FT /product="ferric siderophore receptor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3663" FT /note="Similar to Bordetella bronchiseptica unidentified FT ferric siderophore receptor BfrC SWALL:P94274 (EMBL:U79564) FT (724 aa) fasta scores: E(): 0, 99.43% id in 704 aa" FT /protein_id="CAE39820.1" FT /translation="MPALFMLALGAVAAGARAQSAAAGVPDTQGVAQMPAVTVNAAPVD FT DTLEHLEAPVDTGALGRRTQLETPFSTTVVTARDMEERQVNKLGDVFALDASVTDNSAS FT YGAWASYLTVRGLPLDWQNSYRIDGRPFLSYVTTLPFEHFEQIDLLKGASGFMYGFGSP FT GGLVNYVTKKPTDEAVRSVELGYVSKGLLREHVDLGGRVGESGAFGYRLNATHEEGNTY FT NGGSLYRDSVSLALDARLSDRLTWDFQSIYQDRKAIGQEPTIYAGTMAGSELPSPVRND FT NDRLVGQGPYADNAFRYYSTGLKYQLADEWTLSTNYSYSSTRTRRNESVLFLRDQAGDY FT DDYRSDYGEAYGYNQWQAMLEGKFATGPLKHHVVAGASWQKQKNDYSANGVYQLQGTGN FT LRARNTNTYYSEGQLHLYRAAEITQKALFASDTVDLTGGWSVLGGLRYTNYAQQGFDAT FT GARTSRYDKNGVLTPTFALMYKLTPRTMAYASYIESLEPGSSVGATYANFGALLDPLKS FT KQYELGIKTEQDGWAATAALFRIEKKAEYANAANELVQDGKTLYQGLELGASTRIARDW FT NVGGSLMLLDSEYKKGSDFTGNRVAGAPKFVAAAQLAYSVPQVPGLKLRADVKYTGNTM FT LGASNRVQVDDYAIVNIGATYDTQIHGYEATFTAGINNVANKRYWLYQSSDYVKAGDPR FT TYGLTASLKF" FT misc_feature 76330..76398 FT /note="Signal peptide predicted for BPP0079 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.656 between residues 23 and 24" FT misc_feature 78121..78438 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region, score 7.2e-22" FT misc_feature 78388..78438 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="PS01156 TonB-dependent receptor proteins signature FT 2." FT CDS 78581..79084 FT /transl_table=11 FT /locus_tag="BPP0080" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3664" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4095 pa4095 SWALL:Q9HWT3 (EMBL:AE004825) (177 aa) FT fasta scores: E(): 1.4e-14, 32.23% id in 152 aa, and to FT Alcaligenes sp 2,4'-dihydroxyacetophenone dioxygenase Dad FT SWALL:Q9REI7 (EMBL:AJ133820) (176 aa) fasta scores: E(): FT 2.5e-12, 31.69% id in 142 aa" FT /protein_id="CAE39821.1" FT /translation="MGHGIAGGTGLAARNEAPELIRALDRDDERCWVPLAPGAWFYPMA FT FDVRNGAWHSVFRVAPGAQLPTHYHLGRVVGCTLRGRWHYRERDWEHRPGSYLLEVPGD FT SHTFEVIGEETVELFTVNEGGFLLLDERGDVTGITDVLLRLEQARAHYERVGLGRAAID FT SLIR" FT CDS 79103..79882 FT /transl_table=11 FT /locus_tag="BPP0081" FT /product="putative aldolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3665" FT /note="Similar to Erwinia chrysanthemi AcsB SWALL:Q93AU1 FT (EMBL:AF416739) (258 aa) fasta scores: E(): 1.9e-18, 32.01% FT id in 253 aa, and to Escherichia coli FT 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or FT HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: FT E(): 7.6e-17, 27.55% id in 254 aa" FT /protein_id="CAE39822.1" FT /translation="MTTLKARLRQGQAITMIGNSLPDTYAAEMVASAGFDAVMIDLQHS FT AIGLHEVNDLARAVRAQGCAPVVRVAANDPAAITKVLDGGVDAVVAPMINSAEACRQFI FT SACYYAPLGDRSFGPYLGQVIQRQSIQDYYAQTRDRLLPIAMIENEEGVRQAEQIMRTE FT GLGAIYVGASDLSIAMGMDCVPDYRNARLLDCIKGLIDLGERCGIPVGAFVPTLEDSLM FT LQSLGARILWVGSDQGFIKAGCAARAQQYHAESSPRR" FT misc_feature 79106..79858 FT /note="HMMPfam hit to PF03328, HpcH/HpaI aldolase family, FT score 1.8e-20" FT CDS 79911..80927 FT /transl_table=11 FT /locus_tag="BPP0082" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3666" FT /note="Similar to Pseudomonas sp. hypothetical 35.9 kDa FT protein in tcbD-tcbE intergenic region precursor FT SWALL:YTCB_PSESQ (SWALL:P27103) (336 aa) fasta scores: E(): FT 1.1e-28, 35.31% id in 320 aa, and to Comamonas testosteroni FT OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta FT scores: E(): 1.2e-26, 39.09% id in 266 aa" FT /protein_id="CAE39823.1" FT /translation="MKTLASMVRWPRIAGAVVRQACAAALGLALGAAPALADYPSRPVT FT LVVPSPPGGSTDAIARVLADALGKRLGQSIVIENKGGGGGIVGSSYVLDKPADGHTLLL FT AISSKTVARALQPALAYDPIRDFTAVALVSRVPTVMVTSVAAGLPDFARLKAYIAANPG FT KTAWAVPGIGTAPHLTEHVLMQALGGKVNEIQYRGSAPMHVDLLAGRVDVVVDSYTALR FT QHIDDRKVVPVAVIGRGRIEAMSAVPTLGELGYRTFEEVLFDGWNAIDVRASTPPEVVA FT RLSQALQDVLADRAFRERVVQLGLVPFAPMPASQAQDFVQDVSRVLSPVAASLAAAQ" FT misc_feature 79911..80021 FT /note="Signal peptide predicted for BPP0082 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.995 between residues 37 and 38" FT misc_feature 80085..80918 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.5e-59" FT CDS 80981..81775 FT /transl_table=11 FT /locus_tag="BPP0083" FT /product="GntR family regulatory proteins" FT /note="ortholog of Bordetella pertussis (BX470248) BP3667" FT /note="Similar to Deinococcus radiodurans transcriptional FT regulator, GntR-family dra0211 SWALL:Q9RYU6 (EMBL:AE001863) FT (279 aa) fasta scores: E(): 3.1e-07, 28.38% id in 229 aa, FT and to Streptomyces coelicolor putative GntR-family FT regulatory protein sco6974 or sc6f7.27C SWALL:Q9KZB5 FT (EMBL:AL353870) (261 aa) fasta scores: E(): 3.9e-05, 28% id FT in 250 aa" FT /protein_id="CAE39824.1" FT /translation="MSASVDVLSLPEVEAAASADTPNLLYWTIYQGLVRSIEADTAAVG FT KDLPIERLISAHYSASRFTVRQALDLLEKRGYIRKQRAKPARVISRSPVVPVERHLRRL FT SDILSPAVIHQTRVTGFGPARHDEAAATLGQAPGAQLYRLQLVHADQAQNIGFSDIYFP FT AHIGQRLSLQDFDAAARNGPLFVYPIVEQKIGFKVDHARINIGAESHARAQRTAVAEAL FT GTAPLVRVQYVFSHAGEPVQFTTNWLDSRFFSVSYELAEGEF" FT misc_feature 81065..81244 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 5.9e-06" FT CDS complement(81772..82713) FT /transl_table=11 FT /locus_tag="BPP0084" FT /product="transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3668" FT /note="Similar to Ralstonia solanacearum probable FT transcription regulator protein rsc0144 or rs01014 FT SWALL:Q8Y337 (EMBL:AL646057) (321 aa) fasta scores: E(): FT 6.5e-32, 38.26% id in 311 aa, and to Burkholderia cepacia FT DntR SWALL:Q8VUD7 (EMBL:AF169302) (301 aa) fasta scores: FT E(): 3.8e-30, 34.11% id in 299 aa" FT /protein_id="CAE39825.1" FT /translation="MIAKHLDLNLLMIFDAILAEGHVTRAAERLAMSQSAVSKGLAQLR FT QAFGDPLFLRASRGVVPTHRALEIADQVRQAIAALNSLAGPVTEFDARSAHAHFNIGAT FT DYVSFVLLPGLMRRLQETAPHVSLTLHDMESMMPEEMLLAGKVDLVISSVASVNFPIYR FT QELFRDHYVCLCRAGHPALADPVPIEQFVSSRHLAMPRQNGARERVLQDTLQRLGVTRD FT VAVQVPHMLAIPATLTATDLVATMACRVAREFAARHPLQVLAHPLPLPDFPVSQLWHDR FT TRRSPSHQWLRDTVYDLARVNACPAPQDGAPG" FT misc_feature complement(81814..82440) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.6e-26" FT misc_feature complement(82513..82692) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 9.9e-23" FT misc_feature complement(82558..82650) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 82993..84483 FT /transl_table=11 FT /locus_tag="BPP0085" FT /product="putative chlorohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3669" FT /note="Similar to Pseudomonas sp. hydroxydechloroatrazine FT ethylaminohydrolase AtzB SWALL:ATZB_PSESD (SWALL:P95442) FT (481 aa) fasta scores: E(): 8.8e-07, 24.49% id in 498 aa, FT and to Halobacterium sp. Vng1205C SWALL:Q9HQE0 FT (EMBL:AE005047) (431 aa) fasta scores: E(): 8.2e-20, 29.7% FT id in 478 aa" FT /protein_id="CAE39826.1" FT /translation="MLTQIKGEWVLGFADGNHRMLRDASVVYEGERIVHVGTEFDGVAD FT RVIDARGCLVAPGFIDTHVHSGHRALHKLLADGGRPDLFGQPYMDVTIARDGTRIKGYP FT NYLSREEAAVDPGIALHAAFTVAELLRNGVTTFVELGGHVMVQEALWRECERLGVRGYL FT GAGYDSGRWAADDQGRLRRVPYPDGGDHLFEEAVAFIKRVQAAGNDLVNGILVPREVEN FT CSVDILRRTVQAAQELGVPMATHAGYNVIEFYETVREHRMTPIELLHSVGMLGPRLNIG FT HANLISDSPRLNYSGGRDLALMGEHRVSISHCPINIVRRARVLDSWKKYREAGVNLTIG FT SDTYPRDMVMNMRTASYHGKVMSHDLTAASAAEVFEAATLGGARSLGRTDIGRLEPGAR FT ADVIAINVGRQDVLRYGPIWDPIRSLVECGVGDDVELVVTNGQVRMEQGRIVGVDLGAL FT RAEAQQFADNVWRDLQDWDPLRRTAQAMCPPLFCPDCM" FT misc_feature 83377..84315 FT /note="HMMPfam hit to PF01685, Chlorohydrolase, score FT 2.9e-21" FT CDS 84522..85412 FT /transl_table=11 FT /locus_tag="BPP0086" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3670" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 4.8e-28, 37.14% id in 280 aa, and to Agrobacterium FT tumefaciens hypothetical protein atu4727 or agr_l_312 FT SWALL:AAK88723 (EMBL:AE009401) (329 aa) fasta scores: E(): FT 8.6e-27, 39.09% id in 220 aa" FT /protein_id="CAE39827.1" FT /translation="MKKLMQWGAALALAVTCGAAQAGDAVAAYPQRPVRLIVPYGAGGA FT ADVLAHIMAEKLSAIWKQPVIVENKPGGVGTIGIMATVQAEPDGYTLVSVPVSDLAVNP FT HLYRKRPFDVRKDLAPVSQVGAVPNVLLVSNALEVGDVQALVARAAAKPGYLTYSSPGV FT GSQAHIAAEMFAMRAGLSLQHIPYNSVPAALTDVAGGQIDMMFAQLPAVLPFVKSGRVK FT VLAVAADARTPLALREKIAAGIASAIQSPQVREKLAAQGLIGLGGTPQQLEQAWRQDYE FT RYGAAVKAMHIQLLD" FT misc_feature 84522..84587 FT /note="Signal peptide predicted for BPP0086 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 22 and 23" FT misc_feature 84666..85397 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.5e-51" FT CDS 85565..86710 FT /transl_table=11 FT /locus_tag="BPP0087" FT /product="putative glycosyl transferases" FT /note="ortholog of Bordetella pertussis (BX470248) BP3671" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1470 SWALL:Q9PDA9 (EMBL:AE003977) (376 aa) fasta scores: FT E(): 6.3e-28, 43.31% id in 374 aa, and to Rhizobium FT meliloti putative glycosyltransferase protein r01229 or FT smc01790 SWALL:Q92QS8 (EMBL:AL591786) (414 aa) fasta FT scores: E(): 3.4e-18, 30.12% id in 395 aa" FT /protein_id="CAE39828.1" FT /translation="MSQPHPLRFAHAEAAIGFGGQEQRILKEALAMRERGHHVELICRP FT QARLIERARDAGIRVHTVPMGGLRNFVRGVPRVRRILREGGFDVLNTHSRIDTLLAGAG FT ARLAGTPLVVRTRHLSNRVNSMLSYTWIPHRVSTVSDHVRRYLIERGVSPAHIETIYSP FT INLPPPGLRSTLRDELGLPADAVVVACVAIMRATKGHRELIEALRPLMASRPQVHLVLV FT GNGSPLFEQLQALIAELGLGERIHMLGFRDDVPNVLAGSDIFALPTRKEASGTVFVEAA FT ACGLPVVGVDVGGVSEMLRNGETGLLVPPDDAAALQGALRSLIDDASLRARMGGAGERM FT VRDEGKFSLARLAERTELVYRKWLAERRDAPTAASRSARQS" FT misc_feature 86075..86584 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 8.2e-43" FT CDS 86717..87535 FT /transl_table=11 FT /locus_tag="BPP0088" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3672" FT /note="Weakly similar to Escherichia coli hypothetical FT protein YrbL or b3207 SWALL:YRBL_ECOLI (SWALL:P46021) (210 FT aa) fasta scores: E(): 0.031, 25.88% id in 197 aa, and to FT Salmonella typhimurium, and Salmonella typhi putative FT cytoplasmic protein YrbL or stm3325 or sty3504 SWALL:Q8XFU2 FT (EMBL:AE008853) (210 aa) fasta scores: E(): 0.049, 25.47% FT id in 212 aa" FT /protein_id="CAE39829.1" FT /translation="MSIPTSRLAAVQALPQDIAPQTPRDRMPAVLPVMDVVPAATDWPP FT FAVVDLLGATLLATGSERDVYHHPGNAALLIKIVNRARINEPGRRRPWHKKFHREDAHR FT VFITELVEYISTTVQLRQADGNTLLARIAGLALTSAGLGLVVEKIVDAEGKAAPTLVQV FT VSTQGFGPQLREQLRAFFLALIEAHVIFNDVSARNIVVGRNATGQDGLFLVDGFGPKQL FT LPLYAWSKTLNRRRLLRKYEDMVRKLARLGDRLARQAGQPLPGDGARPPR" FT CDS 87695..88666 FT /transl_table=11 FT /locus_tag="BPP0089" FT /product="LysR family regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3673" FT /note="Similar to Brucella melitensis transcriptional FT regulatory protein, LysR-family bmei0116 SWALL:Q8YJG7 FT (EMBL:AE009454) (308 aa) fasta scores: E(): 7.6e-27, 29.73% FT id in 306 aa, and to Frateuria sp. ANA-18 regulator of cat2 FT gene cluster SWALL:Q9Z9Y2 (EMBL:AB009373) (295 aa) fasta FT scores: E(): 6.1e-11, 25.33% id in 296 aa" FT /protein_id="CAE39830.1" FT /translation="MGALKNDSSLDVRMLRIFAAVAAADSLSAAAQALNITQSAVSQTV FT TQIESILGMRVLDRTRRPYRLTPAGVALQRQSRQIVDDIDRLIAQVREADLMNRPAIRI FT GMIDSFAATTGPAIVKRLTQSASQVLVWSGLAYGHAQALLNRQVDIIVTTDALEDVDGL FT VRRPILNEPFVVVAPAVRADEFAPLDLRQMAQAAPFIRFSGRSHFGAMIERHLRRCGVT FT APPFLEIDTSDVVMAMIAANLGWALMTPLCLLQGRSWLDQVVVLPLPGPSLARTLHQVS FT RLEEYQEMADMFWQLSRQALETEIFPQVTTQLPWLGRQMRLC" FT misc_feature 87695..87787 FT /note="Signal peptide predicted for BPP0089 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.974) with cleavage site FT probability 0.638 between residues 31 and 32" FT misc_feature 87728..87907 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.3e-20" FT misc_feature 87770..87862 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 87977..88600 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.3e-19" FT CDS 88692..89693 FT /transl_table=11 FT /locus_tag="BPP0090" FT /product="periplasmic solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3674" FT /note="Similar to Escherichia coli taurine-binding FT periplasmic protein precursor TauA or SsiA or b0365 FT SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): FT 4.5e-18, 31.71% id in 309 aa, and to Rhizobium meliloti FT putative taurine uptake ABC transporter periplasmic FT solute-binding protein TauA or rb0965 or smb21526 FT SWALL:Q926G5 (EMBL:AL603645) (339 aa) fasta scores: E(): FT 8e-17, 30.51% id in 331 aa" FT /protein_id="CAE39831.1" FT /translation="MQETRRQFIKGMAISAAALALPVAGRSWAAKAEAVRYGGSAWLGH FT YPAWLAIQAGYFKAENLEVGWESFGTTSARVSALLSGNIDMAVTAAPAALAVMSRGSCH FT FAIIGVPENFGRVEGLIVRSQVARLEDLKGKKVGVTFASSAHLLVLNLLDQAGLKAGKD FT VTVLNVPAPELPAAFQSGQIDAAAAWTPQFNAIRAMPDAKVLVDDTSFSLYKEYGVTPG FT PDVLVARRAFLDKNPEAVKRFLKAYFRANEQLKTQPDATVAALTELTKLSAADQLEMVK FT GADWYTAAEQGALLAPGSKYIDGLQKLAEMMVRYDQIDKAPPVREWVDAAYL" FT misc_feature 88692..88778 FT /note="Signal peptide predicted for BPP0090 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.985 between residues 29 and 30" FT CDS 89757..90527 FT /transl_table=11 FT /locus_tag="BPP0091" FT /product="ABC transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3675" FT /note="Similar to Escherichia coli taurine transport system FT permease protein TauC or SsiC or b0367 SWALL:TAUC_ECOLI FT (SWALL:Q47539) (275 aa) fasta scores: E(): 2.1e-34, 37.34% FT id in 241 aa, and to Methanopyrus kandleri homolog of FT ABC-type nitrate/sulfonate/taurine/bicarbonate transport FT systems, permease component mk0602 SWALL:AAM01817 FT (EMBL:AE010353) (251 aa) fasta scores: E(): 7.1e-38, 40.23% FT id in 251 aa" FT /protein_id="CAE39832.1" FT /translation="MNAQNRQRRPDLLLISSVSVIVLLLFWEAVCRLQWVDALFLPPPS FT DVFARMGNMWEQGSLLDHIVASARRVMVGFAAATALAIPLGIFLGTSQRARAAFDPILS FT FLRPLPSMSWIPLSLLWFGITETQKYSIVFMGTFAPALLYVIEATRNIDPLLIRAARNL FT GASGPQVMRSVILPASLPQIFSGFKVILGLSWTCVISAELVAAKEGLGFLIMNGKEFFQ FT TDTVVLGMALISVTVLVTDVVFRIIENRVLAWSR" FT misc_feature join(89790..89849,89967..90026,90063..90131,90144..90212, FT 90303..90371,90429..90497) FT /note="6 probable transmembrane helices predicted for FT BPP0091 by TMHMM2.0 at aa 12-31, 71-90, 103-125, 130-152, FT 183-205 and 225-247" FT misc_feature 90198..90431 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 5.2e-06" FT CDS 90515..91306 FT /transl_table=11 FT /locus_tag="BPP0092" FT /product="ABC transporter ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3676" FT /note="Similar to Rhizobium loti ATP-binding protein of ABC FT transporter mll1253 SWALL:Q98KZ4 (EMBL:AP002997) (267 aa) FT fasta scores: E(): 6.8e-43, 46.59% id in 264 aa, and to FT Agrobacterium tumefaciens ABC transporter, nucleotide FT binding/ATPase protein atu0159 or agr_c_259 SWALL:AAL41183 FT (EMBL:AE008990) (261 aa) fasta scores: E(): 1.9e-42, 49.6% FT id in 250 aa" FT /protein_id="CAE39833.1" FT /translation="MVAVNDPMISIEGISKSFGSFQALQGVDLKIPRGEFLVVLGASGC FT GKSTLLNLITGFERPTAGRIVVNGREVVDVDPHCGMVFQQYALFPWLTVAENVAFGLKM FT KGVAAATRRETAQQFIEMVGLKGFENAYPKALSGGMRQRVSIARVLANDPDVILLDEPF FT AALDAMTRQVLQEELTRIYEQSGKTIVFITHSIDEALLLSSRMVIMSARPGRVACDMPN FT DLPYPRNADVQLSPRYIELKSQIWDIVQNEVMRSLQARADQ" FT misc_feature 90614..91150 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.3e-65" FT misc_feature 90635..90658 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 90920..90964 FT /note="PS00211 ABC transporters family signature." FT CDS 91334..92650 FT /transl_table=11 FT /locus_tag="BPP0093" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3677" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4186 SWALL:Q9HWJ5 (EMBL:AE004835) (439 aa) fasta FT scores: E(): 2.6e-52, 37.03% id in 432 aa, and to Ralstonia FT solanacearum putative oxidoreductase protein rsc2113 or FT rs01491 SWALL:Q8XXK0 (EMBL:AL646068) (387 aa) fasta scores: FT E(): 1.5e-46, 37.53% id in 381 aa" FT /protein_id="CAE39834.1" FT /translation="MSSPSGSSRTFPQYQSGSGWNAMLPKRTPRTAAPARRHFKSLVIG FT AGYTGLAAARRLAELQPQDQVLVVDATVAGEGSAGRNSGFLINLPHNTRMSGHHSPLEV FT ARKQIAMLQSGLDWLAQLSGQGGFDCGWDLAGKYHAAATADGEQSLRGALQQYGQWGVA FT FSELDRDALQAQLGTRYYRFGYHSMNNVFVQPAALIRGLADSLPENVWLMEDNPVLSID FT GSGPYKVRTRGGEFTADNVILANNAFARRLGFLRSRLVTIFTYAGVTPVLSPAQQALLG FT ERDQWGVIPANRLGTTLRRISGGRFMVRSAYSYEAEQPLERMEQLLRDSFVRRYPDLAA FT HDFEYVWSGSTGLTGNGASFVGAIQPGLYASVGCNGAGVIKGTIYGKLLGEQVAGHRSA FT MLDDLASFEKPNWLPPEPLRRIGALSTIAYQARKAGLEK" FT CDS complement(92787..92975) FT /transl_table=11 FT /locus_tag="BPP0094" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3678" FT /note="No significant database matches." FT /protein_id="CAE39835.1" FT /translation="MARRRAPVFFDQIRTIVRKEGIMKMIAIGAGVMLLAGLVRACQGW FT RRLLRQLPDRNEDMTLF" FT misc_feature complement(92853..92975) FT /note="Signal peptide predicted for BPP0094 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.795) with cleavage site FT probability 0.792 between residues 41 and 42" FT CDS complement(92984..93628) FT /transl_table=11 FT /locus_tag="BPP0095" FT /product="TetR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3679" FT /note="Similar to Ralstonia solanacearum putative FT transcription regulator protein rsc0472 or rs04423 FT SWALL:Q8Y264 (EMBL:AL646059) (213 aa) fasta scores: E(): FT 8e-34, 51% id in 200 aa, and to Agrobacterium tumefaciens FT transcriptional regulator, TetR-family atu5291 or FT agr_pat_419 SWALL:AAK90667 (EMBL:AE008951) (221 aa) fasta FT scores: E(): 6.7e-13, 33.33% id in 192 aa" FT /protein_id="CAE39836.1" FT /translation="MPGRHFSHDRAKLAGMSIPKSELTFAAIVDAALDMAAAQGMESLT FT LGEVAKRLGISKSGVFSRVGSREALLHAVLQEYDRRFLGAVFAPAMAAPRGLPRLDAMV FT GHWIERAANVEALTGCIYVAGAFEYDDVDNPMRGRVQANVRGWRAALGRTVRQAIDEGH FT LRPDTDPEQLVFEIYSLMVGLMHDARFLRDPRAHERVRQAYARLIATYRNT" FT misc_feature complement(93407..93547) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 1.8e-11" FT CDS complement(93664..95841) FT /transl_table=11 FT /gene="glcB" FT /gene_synonym="glc" FT /locus_tag="BPP0096" FT /product="malate synthase G" FT /EC_number="4.1.3.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3680" FT /note="Similar to Escherichia coli malate synthase G GlcB FT or Glc or b2976 SWALL:MASZ_ECOLI (SWALL:P37330) (722 aa) FT fasta scores: E(): 7.7e-181, 63.26% id in 716 aa, and to FT Pseudomonas aeruginosa malate synthase G GlcB or pa0482 FT SWALL:Q9I636 (EMBL:AE004485) (725 aa) fasta scores: E(): FT 5.9e-189, 67.35% id in 726 aa" FT /protein_id="CAE39837.1" FT /translation="MTERIPHHGLQVAASLHRFIEDEALSGSGLAPDEFWAGFAALVRD FT LAPRNRELLAERDRLQGEIDAWHRAHPGPVRDSAGYQALLERIGYLQPQPAQVTASTRD FT VDSEIASQAGPQLVVPVSNARYALNAANARWGSLYDALYGTDAIPPVAGDDGKGYNPAR FT GEAVIARARAFLDEAAPLAQGSHADATAYAIEGGKLAVTLGAGQRTGLRNPAQLAGYQG FT DASQPAAVLLANNGLHFEIQIDRQHQIGATDAAGVKDVLLEAALTTIMDCEDSVAAVDA FT DDKVLIYRNWLGLMKGDLSESVTKGGKTFTRRLNADRQYHKPDGGTLTLHGRSLMFVRN FT VGHLMTNPAILDEQGNEVPEGILDAVITSLAALPDRANRLNSRTGSIYIVKPKMHGPAE FT AAFANELFDRVEDLLKLPRHTIKMGIMDEERRTSVNLKACIAAAAARVAFINTGFLDRT FT GDEMHTGMEAGPMLRKGDMKSSAWITAYERNNVLVGLDCGLRGRAQIGKGMWAMPDMMA FT AMLEQKIGHPKAGANTAWVPSPTAATLHAMHYHQVDVAAVQQALEQTRYDSVRDELLAG FT LLTVPVGDPAAWSADDIQRELDNNAQGILGYVVRWIDQGVGCSKVPDINNVGLMEDRAT FT LRISSQHIANWLRHGIVDRAQVNATFERMAKVVDQQNAGDPNYLPMAGHFDTSFAYRAA FT CALVFEGLTQPNGYTEPLLHEYRQAFKAAQR" FT misc_feature complement(93748..95793) FT /note="HMMPfam hit to PF01274, Malate synthase, score 0" FT CDS 96085..96849 FT /transl_table=11 FT /gene="glcC" FT /locus_tag="BPP0097" FT /product="GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3681" FT /note="Similar to Escherichia coli glc operon FT transcriptional activator GlcC or b2980 SWALL:GLCC_ECOLI FT (SWALL:P52072) (254 aa) fasta scores: E(): 2e-52, 63.82% id FT in 246 aa, and to Pseudomonas aeruginosa transcriptional FT regulator GlcC or pa5356 SWALL:Q9HTK2 (EMBL:AE004947) (251 FT aa) fasta scores: E(): 1.8e-58, 66.53% id in 248 aa" FT /protein_id="CAE39838.1" FT /translation="MEPGVDGARKQIAEVVAERIERLILDGVLKAGQALPSERRLTEKL FT GVSRTALREGLRVLWARQIIHTAQGKGSYVAQISQVDAGPLVHLFNSQPRTLYDLLEVR FT ALLESESARLAAIRGTDADFIMIRRRYDEMLAAHGRETDSATHAHLDHAFHLAICQASH FT NAVLVHTLQSLTDLLLGSVFACVNNLYHREPHKRHIDQQHERLFLAVLAREPEQAHQAA FT RAHVDSVRQSLAEIEQEEQRLVRATLRLEGWV" FT misc_feature 96130..96309 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 2.5e-16" FT misc_feature 96187..96261 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(96846..97973) FT /transl_table=11 FT /locus_tag="BPP0098" FT /product="putative dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3682" FT /note="Similar to Bacillus stearothermophilus L-lysine FT dehydrogenase LysDH SWALL:Q9AJC6 (EMBL:AB052732) (385 aa) FT fasta scores: E(): 1.2e-14, 28.92% id in 363 aa, and to FT Agrobacterium tumefaciens dehydrogenase atu0946 or FT agr_c_1727 SWALL:AAL41960 (EMBL:AE009059) (366 aa) fasta FT scores: E(): 2.5e-74, 54.31% id in 359 aa" FT /protein_id="CAE39839.1" FT /translation="MVRPPYPIAILGAGKIGAAIALLLQRGGDYDILVADQDPARLQAV FT ARLGCRTAQVRDDDALQQAVSGRYAVLNALPFHRARAAAAACVRAGAHYFDLTEDVAST FT HAIRELAASAGTMLMPQCGLAPGFIGVVGSDLSRRFDRLLDLRMRVGALPRFPSNALRY FT NLTWSTEGLINEYCNACEAIVDGALVAVPPMEGYETFTLDGIEYEAFNTSGGLGTLPQT FT LLGKARNVDYKSIRYPGHCAIMKLLLNDLRLRERRDLLQEILESAIPSTDQDVIVILAS FT ASGYRQQRLVQESFSARIYGATVDGQTLSAIQLSTAADVCTMLDLAVHGHLPQRGFIGQ FT EQVPLAALLENRYGRIYAGQPLPAREAPQALLPGS" FT CDS complement(98199..98585) FT /transl_table=11 FT /locus_tag="BPP0099" FT /product="Putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3683" FT /note="No significant database matches." FT /protein_id="CAE39840.1" FT /translation="MKTLATAVMLSMTMATGAQAADLGAEPTRAQVQAELVQAKANGQY FT TFGEQDYPAAITQGSALSAAEVRDDLAQAKAAGEVTFGNLDYPPQASNVNSSMTRAQVQ FT ADLAQAKNDGVVTFGNLDYPPQHG" FT misc_feature complement(98526..98585) FT /note="Signal peptide predicted for BPP0099 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 20 and 21" FT CDS complement(98851..99777) FT /transl_table=11 FT /locus_tag="BPP0100" FT /product="UbiA prenyltransferase family protein" FT /EC_number="2.5.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3684" FT /note="Similar to Arabidopsis thaliana para-hydroxy bezoate FT polyprenyl diphosphate transferase atppt1 SWALL:Q9FRU7 FT (EMBL:AB052553) (355 aa) fasta scores: E(): 1.6e-40, 43.51% FT id in 239 aa, and to Saccharomyces cerevisiae FT para-hydroxybenzoate--polyprenyltransferase, mitochondrial FT precursor Coq2 or ynr041c or n3419 SWALL:COQ2_YEAST FT (SWALL:P32378) (372 aa) fasta scores: E(): 7.5e-38, 40.41% FT id in 287 aa" FT /protein_id="CAE39841.1" FT /translation="MSASQQQSVDLNDIVFTDWVERWLPRPWRPYARLCRLDRPIGTWL FT TLLPCIAALVQAAGGLPDLRRLLIFSLGALLMRGIGCTVNDMWDRDIDKHVERTRFRPL FT TSGQLSMRQAVAFLIGQLLVCASLLFFINDMSRWLAVAVLPFVFIYPFCKRVTYWPQVV FT LGICFNWGMLMAWSDTQDHLPLAAIAMWLGAVLWQVGYDSIYAYVDVRDDRSLGLHSTA FT TRFGEQGKLWIGGFYAATLALWTWGGYAMGLGWGYFAGIGAVAIHLAWQLREFDLQRPE FT RNFKLFRANLWTGVLLIAAALAGTLPY" FT misc_feature complement(join(98860..98925,98962..99018,99034..99090, FT 99154..99219,99250..99300,99322..99372,99385..99450, FT 99514..99579,99592..99657)) FT /note="9 probable transmembrane helices predicted for FT BPP0100 by TMHMM2.0 at aa 40-62, 66-88, 109-131, 135-152, FT 159-176, 186-208, 229-248, 253-272 and 284-306" FT misc_feature complement(98863..99651) FT /note="HMMPfam hit to PF01040, UbiA prenyltransferase FT family, score 9e-63" FT misc_feature complement(99457..99525) FT /note="PS00943 UbiA prenyltransferase family signature." FT CDS complement(99864..101063) FT /transl_table=11 FT /locus_tag="BPP0101" FT /product="putative aminotransferase" FT /EC_number="2.6.1.44" FT /note="ortholog of Bordetella pertussis (BX470248) BP3685" FT /note="Similar to Thermococcus profundus multiple substrate FT aminotransferase SWALL:Q9V2W5 (EMBL:AB027131) (417 aa) FT fasta scores: E(): 3.1e-62, 44.05% id in 404 aa, and to FT Ralstonia solanacearum probable aminotransferase protein FT rsc0985 or rs04307 SWALL:Q8Y0Q8 (EMBL:AL646062) (406 aa) FT fasta scores: E(): 1e-88, 58.19% id in 409 aa" FT /protein_id="CAE39842.1" FT /translation="MDKPFEPECSFSERAKQLTSSAIREILKVTERPEVISFAGGLPAP FT GGFPVEVVQAAFDKVLATNGRAALQYGPTEGYAPLRQWVADDLNAVGANVTADQILIVS FT GSQQALDLLGKVLIDKDSPILVEDPSYLGALQSFSLYQPKYVPIPTDDGGLVPEAITAE FT LAEGARFLYALPNFQNPTGRTLNLERRKALVRQAAQFGVPIIEDDPYGELRYAGEPQPG FT LLALAGECGATVIRLGTFSKVLAPGLRLGYIAAPRNIINKLVQAKQATDLHTPTLTQMA FT VYEVVKTGFLAEHLPRVREIYRVQGRCMLEAIEREFPASVSWTKPEGGMFIWVTLPEHI FT DSTKLLAQAVEQNVAFVPGGPFYAGTPRQNTLRLSFATVPEAKIREGIAILGKLLKAAI FT " FT misc_feature complement(99879..100793) FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II, score 3e-06" FT CDS 101202..101696 FT /transl_table=11 FT /locus_tag="BPP0102" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3686" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1230 SWALL:Q9PDZ8 (EMBL:AE003957) (162 aa) fasta scores: FT E(): 3.6e-38, 61.03% id in 154 aa, and to Rhizobium loti FT hypothetical protein Mll2226 SWALL:Q98IV8 (EMBL:AP002999) FT (165 aa) fasta scores: E(): 1.6e-36, 59.23% id in 157 aa" FT /protein_id="CAE39843.1" FT /translation="MFDATPISTVSKPVFYAELAAQARALLAGEHDRIANAANFSALVY FT QALPDINWAGFYFHDGQELVLGPFQGKPACVRIALSRGVCGAAASQRRTQVVPDVHAFP FT GHIACDAASRAEIVVPLLHKGSLLGVWDVDSPLPGRFDDEDRAGMEALCEVFLHSLGSA FT D" FT misc_feature 101295..101681 FT /note="HMMPfam hit to PF01590, GAF domain, score 1.2e-05" FT CDS 101984..102883 FT /transl_table=11 FT /locus_tag="BPP0103" FT /product="putative dihydrodipicolinate synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3687" FT /note="Similar to Yersinia enterocolitica FT dihydrodipicolinate synthetase DhdpS SWALL:Q93IH0 FT (EMBL:AJ345001) (293 aa) fasta scores: E(): 3.3e-22, 33.68% FT id in 282 aa, and to Ralstonia solanacearum probable FT dihydrodipicolinate synthase-related transmembrane protein FT rsc0665 or rs01570 SWALL:Q8Y1M5 (EMBL:AL646060) (304 aa) FT fasta scores: E(): 1.2e-51, 58.94% id in 285 aa" FT /protein_id="CAE39844.1" FT /translation="MQYPAQSPFQDIWIPLVTPFADGAVDLPALRRLVRDYKAAGVDGL FT VACGSTGEAAALDEAEQLAVLDAVLEEAGALPVAMGLAGNHQGHVLRRLARLGERPLAG FT VLAPAPYYVRPSQAGAQAYFCALADASAAPLILYDIPYRTGAQLDTATLLALAEHPNIA FT AVKDCGGSVDKTLALIAHGGVAVLAGEDLQGLGTLCLGGTGMIAAAAHVRPDLFVAMHR FT AVRAQQLGQAQRLFLALAPVIRLLFAEPNPAPLKALLASQGRLRNEMRAPMLPAAEALT FT RRLQAELDVLDRAFAPGA" FT misc_feature 102005..102859 FT /note="HMMPfam hit to PF00701, Dihydrodipicolinate FT synthetase family, score 1.5e-38" FT misc_feature 102113..102166 FT /note="PS00665 Dihydrodipicolinate synthetase signature 1." FT misc_feature 102395..102487 FT /note="PS00666 Dihydrodipicolinate synthetase signature 2." FT CDS 103231..109044 FT /transl_table=11 FT /locus_tag="BPP0104" FT /product="putative adhesin" FT /note="ortholog of Bordetella pertussis (BX470248) BP3204" FT /note="Similar to Bordetella bronchiseptica putative outer FT membrane ligand binding protein BipA SWALL:Q9APE8 FT (EMBL:AF304006) (1578 aa) fasta scores: E(): 2.7e-186, FT 45.88% id in 1445 aa, and to Escherichia coli O157:H7 FT putative adhesin EaeH or z0375 or ecs0336 SWALL:Q8X6G3 FT (EMBL:AE005207) (1417 aa) fasta scores: E(): 2.7e-25, FT 23.87% id in 1420 aa" FT /protein_id="CAE39845.1" FT /translation="MDMNLIPKLTRAHLPARGRRHWYRRHRAGAAGMSAVLAMQAAAPV FT AYGQGAPTFSATQVADAASNAVAQPGAVETRVAQTIQALAQAREAGGARQDGRASLDGQ FT FLRSQAQAQANVLVQQGVQWANETGLPWLRRLEGNVSYDFSGRDVAVDVRTIDALHLDQ FT DRALLLQLGGHNQNHRPTVNAGVVARSAAGSSLILGGNAFLDYEVGKRHLRGSLGAEAV FT AAQFTLYGNVYAPLSGWKAAKRAERREERPAAGWDVGFTARPEAVQGLALNAQYFRWRG FT AQVDYFDDGRYRRNPSGFKYGIEYRPVPLIGVGVEQARLQSGERQTSVQLGVRLNLGEP FT LSRQLRRGAQDTAPPFDRGARLQDFVRRENRIVLDTRRKKIVLALRIAEVRTDPATGRI FT TVYGVTEPLADVQLWLPDGTATSVRANAAGGFEASSAGDMTSGLIRARATDRYGDTSQE FT VTYAYTDTVDKTAPVLSIAGVATDEATGRVTVTGRSEPDAQVTIRFPGGGRKTVRADAN FT GAYRVRSDGDLPAGVIVVQAADAAGNSTQAQQAYQDTVDRTAPEPVQIALDTDVATGRL FT TVSGQAEPGGSVTVTWPDGTTQTVRLDADGGFRVTSAGDAAQGDVVVVVADQAGNRAAP FT VRAHYADPVDRTAPMTPTVRHATDAQTGRVTVMGRTEAGALVTVQFPDGSSKTVRAQND FT GGYAATSDTDMVSGPIVVSAGDADGNRTPAQQVMYTDTLDKTAPASPSLTVREDAASGR FT ATVTGQAEPGAAVRVVFPNGEAQTVTAGSDGAYSVTSAADMVAGEITVVAADASGNQSA FT PARTVFADAVDRTAPAAPTLALSEAADSGRLTVSGRTEPGASVRVTFPDGETVTVTAKA FT DGTYTATSRADMIGGNVTVVATDAAGNAAAPVRAAYADTVDRTPPVLDTPVLSVASDSG FT RVTVTGVTEPGARVQVAIPGESLQTVTADSAGRYRAVSPGDVLRSGTVRVIATDAHGNA FT SAPRDVPYQDAVDRTAPPLTIEAAVEQARTGVVNVSGKTEPNLMVSATFPDGQTAQARA FT DGQGRYQLASPADVARSGRIAVSASDAAGNRAAASAEFTDQVDKTAPRAPTLQLATDTA FT TGRVTASGKAEPGAIVEITWPDQTRVTVVADTSGAYSATSAADMPDGAITAVAADRAGN FT TGAPTRQRYIDSVDRTAPTLGTPSVSTAADTGRVSVTGMTEPGARVQVEIPGEAPRIVT FT ADAAGRYSVVSAGDVLQSGTVRVTATDAHGNASAPAHLRYQDQVDKTAPASPSLTVRED FT AASGRATVTGQAEPGAAVRVVFPNGEAQTVTAGSDGAYSVTSAADMVAGEITVVAADAS FT GNQSAPARTVFADAVDRTAPAAPTLALSEAADSGRLTVSGRTEPGASVRVTFPDGETVT FT VTAKADGTYTATSRADMIGGNVTVVATDAAGNAAAPVRAAYADTVDRTPPVLDTPVLSV FT ASDSGRVTVTGVTEPGARVQVAIPGESLQTVTADSAGRYRAVSPGDVLRSGTVRVIATD FT AHGNASAPRDVPYQDAVDRTAPPLTIEAAVEQARTGVVNVSGKTEPNLMVSATFPDGQT FT AQARADGQGRYQLASPADVARSGRIAVSASDAAGNRAAASAEFTDQVDKTAPAVTIRAV FT TEQAGTGVATVSGATEPGATVSVTFPDGQVARATADRSGAYTVHSARDVTARGNISVIA FT TDAAGNASPSVSRQFSNTVADTVPPSLTIAMVTTDPGNGRITVSGVTEAGARVHVVFPG FT GASDTVTADSKGGYRATSAGDVGSGAVTAQATDASANRSPLKTYAYTDAWQPRQLSAKD FT FSQSRYFVPLTTRGGTDNEPLLRITNQQIPTAELRVALKPYKTEDRAGRLVREAITLKW FT GNAPGVGGDARALHFYVPDSAKAKLRKELTEVERSNDYKFWIEFTDTRFGGVARLYIKV FT ISTL" FT misc_feature 103231..103374 FT /note="Signal peptide predicted for BPP0104 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.678 between residues 48 and 49" FT CDS 109211..109987 FT /transl_table=11 FT /locus_tag="BPP0105" FT /product="putative desaturase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3205" FT /note="Similar to Caulobacter crescentus sterol desaturase FT family protein Cc1671 SWALL:Q9A7P9 (EMBL:AE005841) (274 aa) FT fasta scores: E(): 7.2e-16, 31.67% id in 221 aa, and to FT Homo sapiens lathosterol oxidase Sc5dL SWALL:SC5D_HUMAN FT (SWALL:O75845) (299 aa) fasta scores: E(): 2.5e-08, 31.17% FT id in 170 aa" FT /protein_id="CAE39846.1" FT /translation="MGQAFAALSVWQVMGYGLVFFGGIYLLFGAATWLLTRRVLPALGV FT GRPLDPRPLGPGQWRREFLQSGLSVLIFGLGMVFPWGLVQLGWARLDDDAGPWRIVAEI FT LVLVIWNDVHFWINHRLLHTRLLRRFHLPHHRSVVTTPFSTYSFHPIEALMLGNVILLP FT MVVHDFSFWSLLSVPLFSLFFNCVGHANYDFFPGVSYAHWFAASRRHHLHHACYQGNFG FT FQFTFMDRLFGTRLGADAAQGQLAAYRKRGAVGSAR" FT misc_feature 109235..109870 FT /note="HMMPfam hit to PF01598, Sterol desaturase, score FT 1.7e-05" FT misc_feature join(109247..109315,109409..109477,109505..109564) FT /note="3 probable transmembrane helices predicted for FT BPP0105 by TMHMM2.0 at aa 13-35, 67-89 and 99-118" FT CDS 109971..110849 FT /transl_table=11 FT /locus_tag="BPP0106" FT /product="putative fatty acid desaturase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3207" FT /note="Similar to Synechococcus vulcanus delta 9 acyl-lipid FT fatty acid desaturase DesC SWALL:Q9ZAP7 (EMBL:U90417) (279 FT aa) fasta scores: E(): 0.001, 24.7% id in 255 aa, and to FT Rhodococcus sp. Q15 alkane-1-monooxygenase AlkB3 FT SWALL:Q93DN5 (EMBL:AF388179) (383 aa) fasta scores: E(): FT 3.1e-05, 27.9% id in 258 aa" FT /protein_id="CAE39847.1" FT /translation="MVRPAEWLRHRRDWQSILYLAALPALAAWQWVHGWHWALYAPMLF FT LTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRD FT VARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLG FT LWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWV FT NPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSHLNERGLARYMARVFVLGLFS FT RRCRTHTLMRP" FT misc_feature 109971..110051 FT /note="Signal peptide predicted for BPP0106 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.628) with cleavage site FT probability 0.624 between residues 27 and 28" FT misc_feature join(110016..110069,110079..110132,110169..110237, FT 110322..110390,110448..110516) FT /note="5 probable transmembrane helices predicted for FT BPP0106 by TMHMM2.0 at aa 16-33, 37-54, 67-89, 118-140 and FT 160-182" FT misc_feature 110088..110741 FT /note="HMMPfam hit to PF00487, Fatty acid desaturase, score FT 6e-05" FT CDS 110885..112798 FT /transl_table=11 FT /locus_tag="BPP0107" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3208" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc0865 SWALL:Q9A9U6 (EMBL:AE005763) (399 aa) fasta FT scores: E(): 8.3e-42, 38.24% id in 387 aa, and to Vibrio FT cholerae hypothetical protein Vca1109 SWALL:Q9KKJ6 FT (EMBL:AE004435) (236 aa) fasta scores: E(): 4.4e-05, 23.94% FT id in 213 aa" FT /protein_id="CAE39848.1" FT /translation="MPVAFDRVYLHSAGYFLPGEPVDNDAMDQYIAPLNRISGRIKNRI FT LAENGIRQRYYAIDPEGRTRWSNAQLAAQAIQACLARGDADLSQVSLLASGSSGGDTLM FT PGFANMIQGELSAAPLETLSVHGICAAGVGAIQAAAQGIELGAHRRALAVASELPSRLF FT KRSRFAAPGYDADFDAHFLRWMLSDGAGAMLLGDASQPLAGAANGVRLRLKWIHQRSFS FT GDYPVCMQLGQSAGGQAHLDYGSWSEAEAAGALLLRQDIRLLPHLFDIGIHEYAKLVHD FT GWVDPRQVSHFLCHYSSEKFIPVVEGLMDKAGLAIARERWFSNLAWRGNTGAASILIML FT AEFLQTRTVQPGEQIFCYIPESGRFMAAYMLLQAEGPDETAQPARARAVPAAAPAGEAD FT FIAPPHDPAHAPQGLEPLLGELAAIWHDYRSRVWRTPVIRHLRQGRFAASDYLNWMENW FT VPQVREGSKWMREAAASLSETYQPLAALIGTHAGEEQDDFKILFQDYRNAGGAVEDIDA FT LRRNSGGEALNAYLHALAATRDPIGLLGAIYVIEGTGQRIVPALLPLLKAALALPPDAF FT RFLEYHGHNDENHLARWLLAVELALDCDDSGRARQQIVDTARRTAALYLMQFQHVMEER FT TA" FT CDS 112795..113676 FT /transl_table=11 FT /locus_tag="BPP0108" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc0863 SWALL:Q9A9U8 (EMBL:AE005763) (304 aa) fasta FT scores: E(): 4.6e-54, 49.14% id in 291 aa" FT /protein_id="CAE39849.1" FT /translation="MSRPEPDCLSQPHDPADPDPWRALYLDRSTLLPDPVKQAWLADSS FT SASRQYLLPFLRPLARAFIILIQVVKTFLPRRWSHSRLLHRILAWGLEHFVSPQANWLI FT LRHFHLGAQILAFIARNAPVQVETTPLEPARIADLRDELFVKHDLNLFNFVIRLNQALR FT DAGQTMHAPEQVDYSMIRDPGLRLEDMPQRRRNFLDLQSAIELFTPLYQLMLTDNDFWR FT AANSLQLDETIGIYAAQLLGAPQHLILVNNKHPLVPMSTLRAGYRLVLHGLSTEMLHSL FT LMQMKQQQAEQA" FT CDS complement(113683..115020) FT /transl_table=11 FT /locus_tag="BPP0109" FT /product="probable amino acid permease" FT /note="Similar to Anabaena sp amino acid transporter FT Alr1519 SWALL:Q8YWT1 (EMBL:AP003586) (455 aa) fasta scores: FT E(): 7.9e-66, 46.68% id in 422 aa" FT /protein_id="CAE39850.1" FT /translation="MTRAAESGMAQARGLSVLDAVAVLVGVVIGIGIFGFPPLVAQHAQ FT SESVYLALWLGGAAVMLMGALCYAELGSAYPGAGGEYLYLRHAWGPRVALLFAWARCTV FT IQTGAIAVVAFIYGEYAQELAPLGTHGVALHAAIAVIALTLLNIMGTQPSKRIQLVFTV FT LTLAALAAVVATGLSAPPAPPAPVEPLAGSTLGLLGMGLVFVLLTYGGWNEAAYLSGEL FT REARRNMAKVLLIGTAVVAGAYLLTNLALLQIFGLQGLRETRAVAATLMALAAGPYAAI FT VLSLLVCVTALSTINGTILTGARVYSALGQDVPRLRPLAGWSMRGQTPTSALLAQGAIT FT LVLLGYGAYAHDGVQTLVAYTAPVFWLFMLLVAASVWRLRRLDPHRPRPFRVPLYPLPP FT LLLGLTCAGLVWSSARYAGVGALLGLAVLAAGLPALRLLRAAPRSA" FT misc_feature complement(join(113707..113772,113785..113850, FT 113890..113955,113971..114027,114160..114225, FT 114256..114321,114385..114450,114481..114546, FT 114568..114624,114670..114735,114799..114864, FT 114895..114960)) FT /note="12 probable transmembrane helices predicted for FT BPP0109 by TMHMM2.0 at aa 20-42, 52-74, 95-117, 132-151, FT 158-180, 190-212, 233-255, 265-287, 331-350, 355-377, FT 390-412 and 416-438" FT misc_feature complement(113713..114903) FT /note="HMMPfam hit to PF00324, Amino acid permease, score FT 0.026" FT CDS complement(115017..115862) FT /transl_table=11 FT /locus_tag="BPP0110" FT /product="Putative methyltransferase" FT /note="Similar to Anabaena sp HYPOTHETICAL PROTEIN ALR1520 FT (219 aa) E(): 1.5e-30, 57.831% identity (58.182% ungapped) FT in 166 aa overlap, and to Sulfolobus solfataricus and to FT Sulfolobus solfataricus RIBOSOMAL PROTEIN L11 FT METHYLTRANSFERASE, (161 aa) E(): 9.5e-21, 48.052% identity FT (49.333% ungapped) in 154 aa overlap. Orf not present in B. FT pertussis" FT /protein_id="CAE39851.1" FT /translation="MRTLVAPTHAPKRRMLLALLATPALALAQPAWTQQPPPVKLDVPY FT VPTPDDAVARMLEMADVTAQDTVIDLGSGDGRIAIAAVRDRGARSAMGVDIDPERIAEA FT RANARKAGLADRVTFVQQDLFDTDISKATVLTMYLLPDVNLKLRPRILNSLAPGTRVVS FT HAFTMGEWDSDRYELVDGRSLYLWVVPAHAAGDWQVEDPAGPFTLSVRQDFQKVTASAQ FT RQGERLGVAEAALRGTDLRFTVDAGSGPRTYVGRIQGDRMTAVQAPGNESGWRATRRAP FT " FT misc_feature complement(115764..115862) FT /note="Signal peptide predicted for BPP0110 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.865 between residues 33 and 34" FT CDS 116191..117819 FT /transl_table=11 FT /locus_tag="BPP0111" FT /product="putative dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) FT BP3209+BP0705" FT /note="Similar to Ralstonia solanacearum putative choline FT dehydrogenase lipoprotein oxidoreductase beta or rsc3345 or FT rs02583 SWALL:Q8XU48 (EMBL:AL646074) (544 aa) fasta scores: FT E(): 4.3e-146, 69.96% id in 536 aa, and to Pseudomonas FT aeruginosa probable gmc-type oxidoreductase pa3710 FT SWALL:Q9HXT1 (EMBL:AE004790) (557 aa) fasta scores: E(): FT 2.1e-145, 69.36% id in 532 aa" FT /protein_id="CAE39852.1" FT /translation="MCATAVDTGMEFDYIIVGAGSAGCVLAKRLSADPSVRVLLLEAGG FT ADSWHWIHIPVGYLYCIGNPRTDWCYRTQADPGLNGHSLGYPRGRVLGGSSSINGMIYM FT RGQRADYDGWAAQGNPGWGWDDVLPLFKASEDHHGGASAFHGAGGEWRVERQRLSWKLL FT DAFRAAAAQAGIASIDDFNQGDNEGCDYFEVNQRSGVRWNTAKGFLRPAMDRGNLKVLT FT GARVARVVFQNRRAVGVRFLAEGGGEQYAQARGEVVLAAGAIGSAQLLQVSGVGPAALL FT QARGVPVLHDLPGVGANLQDHLQLRLIYRVQGARTLNGVAGTLWGKAWMGLQYAVQRRG FT PLSMAPSQLGAFARSGPEQSRANLEYHVQPLSLEKFGDPLHDFPAFTASVCNLRPTSRG FT HVRIVSPDPGEHPEILCNYLSTEADRKVAADSIRLTRRIVAQPALARYQPQEYKPGAQW FT QSEEDLQRLAGEIGTTIFHPVGTCRMGDDAQAVVDAALRVHGLQGLRVIDASIMPTITS FT GNTNSPTIMIAEKGAQLLREARRQT" FT misc_feature 116224..117783 FT /note="HMMPfam hit to PF00732, GMC oxidoreductase, score FT 9.9e-182" FT misc_feature 116455..116526 FT /note="PS00623 GMC oxidoreductases signature 1." FT CDS 117946..119232 FT /transl_table=11 FT /locus_tag="BPP0112" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0706" FT /note="Similar to Roseateles depolymerans orf428 protein FT SWALL:Q9F206 (EMBL:AB028938) (428 aa) fasta scores: E(): FT 1.2e-91, 58.31% id in 427 aa, and to Xylella fastidiosa FT hypothetical protein Xf0042 SWALL:Q9PHA2 (EMBL:AE003858) FT (420 aa) fasta scores: E(): 3.7e-45, 53.68% id in 421 aa" FT /protein_id="CAE39853.1" FT /translation="MPHAIEIVATLLFSVAVLHTFSVPFFARLAHRNGPHAGVWHLLSE FT VEAVFGVWAFVLIACMALMAGTDRAVQYMDTRNFTEPLFVFAIMVVASSRPILELVGSL FT VRLLAAMVPVRRELATFFIVMSIVPLGGSFITEPAAMTLAAILLRDGYFRCSGRAGFKY FT MTLGVLFVNVSIGGVLTSYAAPPVLMVAATFGWDTAYMATHFGWRAAVAVCLNAAVLTM FT LCRQALLEGAVGTGAGVNASDDAAEKRPPVPAPVTLMHLAFLVGIVLTAHHPAVFLGML FT MMFIGFAHAYQRHQSRLMIREGLMVGFFLAGLVVLGGLQKWWLQDLLGGLEPTVLFWGA FT TALTAITDNAALTYLGSLVEGTSEAWRYMLVAGAVTGGGLTVIANAPNPAGFAILGKYF FT PDGSISSGRLFIAALVPTLVAAAMFMLPV" FT misc_feature join(117964..118032,118090..118158,118192..118260, FT 118318..118386,118447..118515,118732..118800, FT 118837..118905,118948..119016,119053..119121, FT 119164..119223) FT /note="10 probable transmembrane helices predicted for FT BPP0112 by TMHMM2.0 at aa 7-29, 49-71, 83-105, 125-147, FT 168-190, 263-285, 298-320, 335-357, 370-392 and 407-426" FT CDS 119426..119710 FT /transl_table=11 FT /locus_tag="BPP0113" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0707" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc0464 or rs04433 SWALL:Q8Y272 (EMBL:AL646059) FT (112 aa) fasta scores: E(): 2.7e-13, 54.9% id in 102 aa" FT /protein_id="CAE39854.1" FT /translation="MKCSACGHAEDVLQKISDAPLADCPACGQSTYSKQVTAAGFQLKG FT SGWYVTDFRNNNGAGKPAAGQSAAPAASGGDAGSAPATPAPAAPAATST" FT CDS 119711..120376 FT /transl_table=11 FT /locus_tag="BPP0114" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0708" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein rsc0465 or rs04432 SWALL:Q8Y271 FT (EMBL:AL646059) (243 aa) fasta scores: E(): 4.6e-41, 55.3% FT id in 217 aa, and to Neisseria meningitidis putative FT integral membrane protein nma2020 SWALL:Q9JT22 FT (EMBL:AL162757) (245 aa) fasta scores: E(): 6.3e-34, 47.14% FT id in 210 aa" FT /protein_id="CAE39855.1" FT /translation="MRHSVMRVFKKYFITGLLIWVPLAITVWVLGLLVATLEGFVPGFL FT SSQSLFGVDIPGFRFVLVITVVLLTGVFAANLLGRSLLEHWERILGRIPLVRSIYNSVK FT QVSDTVLAPNGRAFRQAVLIQYPRAGSWTIAFLTGTPSGEVASYLPGEHLSVYVPTTPN FT PTSGFFLMMPRDQVIDLQMSVDAALKYIVSMGVVAPADRRPVSPPTTPGAPLAPGAEP" FT misc_feature 119711..119866 FT /note="Signal peptide predicted for BPP0114 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.823) with cleavage site FT probability 0.419 between residues 52 and 53" FT misc_feature join(119747..119815,119873..119941) FT /note="2 probable transmembrane helices predicted for FT BPP0114 by TMHMM2.0 at aa 13-35 and 55-77" FT CDS 120417..122207 FT /transl_table=11 FT /gene="aspS" FT /gene_synonym="tls" FT /locus_tag="BPP0115" FT /product="aspartyl-tRNA synthetase" FT /EC_number="6.1.1.12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0709" FT /note="Similar to Escherichia coli aspartyl-tRNA synthetase FT AspS or Tls or b1866 SWALL:SYD_ECOLI (SWALL:P21889) (590 FT aa) fasta scores: E(): 4.9e-138, 58.17% id in 593 aa, and FT to Ralstonia solanacearum probable aspartyl-tRNA synthetase FT protein AspS or rsc0466 or rs04431 SWALL:Q8Y270 FT (EMBL:AL646059) (605 aa) fasta scores: E(): 9.3e-195, FT 78.18% id in 596 aa" FT /protein_id="CAE39856.1" FT /translation="MRTCYTGQVCRDHLGQTVTLYGWVNRRRDHGGVIFIDLRDRTGLA FT QIVFDPDNAEAFGTAERLRNEFCISITGLVRLRPEGTANAELASGEVEVLCQQVEILNA FT SVTPPFQLDDDNLSETTRLTHRVLDLRRPQMQHNLMLRYRVSIEVRKYLDQLGFIDIET FT PMLTKSTPEGARDYLVPSRVNAGYFFALPQSPQLFKQMLMVSGFDRYYQITKCFRDEDL FT RADRQPEFTQIDCETSFLNEVEIREIFEGMIRHVFKVVQDVDLPTPFPIMSWTEAMQRY FT GSDKPDLRVNLEFTDMTDVMRDVDFKVFASAATTAGSRVVALRVQGGGEMSRSEIDAYT FT QFVGIYGAKGLAYIKVNDVAKGREGLQSPIVKNLHDAALAELVKRTGAQNGDIIFFGAD FT RAKVVNDAIGALRVKIGHSEFGKKAGLFSGGWKPLWVVDFPMFEYDEEENRYTAAHHPF FT TSPKDGHEDFLESDPGKAVAKAYDMVLNGWEIGGGSVRIHREEVQSKVFRALKIDAEEA FT REKFGFLLDALQYGAPPHGGIAFGLDRIITMMAGAESIRDVIAFPKTQRAQCLLTGAPS FT EVDEKQLRELHIRLRNVEVK" FT misc_feature 120468..120722 FT /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding FT domain, score 2.1e-13" FT misc_feature 120768..122114 FT /note="HMMPfam hit to PF00152, tRNA synthetases class II FT (D, K and N), score 1.2e-13" FT misc_feature 121065..121118 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT misc_feature 121317..121640 FT /note="HMMPfam hit to PF02938, GAD domain, score 1.1e-39" FT misc_feature 122031..122060 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT CDS 122320..123180 FT /transl_table=11 FT /locus_tag="BPP0116" FT /product="putative endonuclease/exonuclease/phosphatase FT family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0710" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc0469 or rs04427 SWALL:Q8Y267 (EMBL:AL646059) FT (248 aa) fasta scores: E(): 8.1e-31, 44.98% id in 289 aa, FT and to Escherichia coli, and Escherichia coli O157:H7 FT hypothetical protein YbhP or b0790 or z1009 or ecs0868 FT SWALL:YBHP_ECOLI (SWALL:P75772) (253 aa) fasta scores: E(): FT 1.3e-20, 36.77% id in 291 aa" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc0469 or rs04427 SWALL:Q8Y267 (EMBL:AL646059) FT (248 aa) fasta scores: E(): 8.1e-31, 44.98% id in 289 aa" FT /protein_id="CAE39857.1" FT /translation="MSLIRVVSYNIHKGRSALGRRESLNDLRLGLYGLRPDLVFLQEVQ FT GRNEVSSVLHAQHESLAAALRLQAAYGRNAIRTGTDHGNALLSRFDILDHENQDISDHR FT LEQRGLLHARIDVGGTEVHCFVVHLGLFAGSRGRQIQALTDRIRQSVPDGAPLLIAGDF FT NDWGDRLAPMFVQQLGLYEVFSHAPRSHGGDLPRLRDSVRRLGNVLRGVPNSVAVLERN FT NQLGMGGAYCPLPPPRTFPAVFPWFRLDRIYQRGFAVRSARVLRGREWARLSDHSPLLA FT ELELP" FT misc_feature 122329..123168 FT /note="HMMPfam hit to PF03372, FT Endonuclease/Exonuclease/phosphatase family, score 2.8e-23" FT CDS 123126..124388 FT /transl_table=11 FT /locus_tag="BPP0117" FT /product="putative phospholipase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0711" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc0470 or rs04425 SWALL:Q8Y266 (EMBL:AL646059) FT (422 aa) fasta scores: E(): 7.1e-33, 46.47% id in 426 aa, FT and to Salmonella typhi putative phospholipase YbhO or FT sty0847 SWALL:Q8Z883 (EMBL:AL627268) (413 aa) fasta scores: FT E(): 1.1e-22, 38.26% id in 392 aa" FT /protein_id="CAE39858.1" FT /translation="MGAPVGSFAAAGRARIAVKGQIVRLHWTDGNAIRLLQNGGDFFPA FT LCEAIDAARLSVHLETYIFLLDRTGRQVLECLESAARRGVKVRVVLDGFGSAGTAEAIR FT LRITQAGGQCRIFRPEPRWLGHLAFSRSRLRRLHRKVAVVDAELAFVGGINIVDDYDDL FT DPGDDIPAPRFDFAVAVQGPLVPHILYAQDLLWVRLNWARLHRHPGDWHRMRLFKPVHA FT DASPAGKLRAALLLRDNLRFRQTFEQAYLYGIQHARRDILIANAYFFPGHQFRKSLMQA FT AARGVRVRLLLQGKPEYRMQYFATRALYDRLLRGGIEIYEYMPGYLHAKVAVIDNMATV FT GSSNLDPFSLLLAREANVVVDDQPFAWDLQERLERAIALGGQFIRPLDYQRRGWLRRCI FT DVAAYTMLRIGVALTGRAGRY" FT misc_feature 123522..123605 FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif, score 2.1e-05" FT misc_feature 124092..124172 FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif, score 0.028" FT CDS complement(124389..125273) FT /transl_table=11 FT /locus_tag="BPP0118" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0712" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein rsc2507 or rs01075 SWALL:Q8XWG7 FT (EMBL:AL646070) (310 aa) fasta scores: E(): 1.3e-53, 53.89% FT id in 295 aa, and to Vibrio cholerae hypothetical protein FT Vca0090 SWALL:Q9KN75 (EMBL:AE004352) (297 aa) fasta scores: FT E(): 4.2e-45, 47.88% id in 284 aa" FT /protein_id="CAE39859.1" FT /translation="MPRRDLVDLLALAAVWGGSFLFMRVAVPEFGPAALMELRVGLAAL FT FLLPLVLWRGKPALIARHWKAILVVGTLNSALPFLLYAYAAQSLGAGFLSVANAVTPVW FT GAVIGWLWLGDRLPRMRALGLLISMSGIVVLVWDKLDFHDGGTGPAVLAAISAPVFYGM FT AANWTKRYLGHVDALTNATGSMVAASLVLAPLAIIHWPEQAVSFEAWRATVLLAIVCTG FT AAYIVFFRLIARVGPTAAVSVTFLVPVFGVLWGVWFLDEAVTPRILAGAGVILAGTALA FT LGLVGARRAAAAN" FT misc_feature complement(join(124419..124484,124500..124556, FT 124578..124643,124674..124739,124779..124832, FT 124863..124913,124935..125000,125016..125081, FT 125118..125183,125196..125252)) FT /note="10 probable transmembrane helices predicted for FT BPP0118 by TMHMM2.0 at aa 7-26, 30-52, 64-86, 91-113, FT 120-137, 147-165, 178-200, 210-232, 239-258 and 263-285" FT misc_feature complement(124425..124799) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 8.7e-22" FT misc_feature complement(124863..125234) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 1.5e-21" FT CDS complement(join(125289..126116,126116..126661)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0119" FT /product="putative membrane protein (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0713" FT /note="Similar to Ralstonia solanacearum probable transport FT transmembrane protein rsp0663 or rs01786 SWALL:Q8XS18 FT (EMBL:AL646080) (537 aa) fasta scores: E(): 1.1e-28, 43.18% FT id in 440 aa, and to Burkholderia cepacia major facilitator FT superfamily transporter homolog SWALL:Q9RPH2 FT (EMBL:AF158699) (531 aa) fasta scores: E(): 1.8e-26, 40.74% FT id in 427 aa" FT /db_xref="PSEUDO:CAE39860.1" FT misc_feature complement(join(125322..126116,126116..126568)) FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 0.0019" FT misc_feature complement(join(125333..125389,125420..125485, FT 125522..125587,125600..125665,125693..125758, FT 125804..125860,125924..125986,125999..126064, FT 126140..126205,126251..126307,126329..126385, FT 126416..126481,126521..126586)) FT /note="13 probable transmembrane helices predicted for FT BPP0119 by TMHMM2.0 at aa 25-47, 60-82, 92-111, 118-137, FT 152-174, 199-221, 225-246, 267-286, 301-323, 332-354, FT 358-380, 392-414 and 424-443" FT variation complement(126116..126118) FT /note="44 bp deletion near this codon in parapertussis; 44 FT bp insertion in pertussis and bronchiseptica" FT CDS complement(126712..127281) FT /transl_table=11 FT /locus_tag="BPP0120" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0715" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein rsc1464 or rs03843 SWALL:Q8XZD7 FT (EMBL:AL646064) (213 aa) fasta scores: E(): 5e-15, 39.62% FT id in 159 aa, and to Rhizobium loti hypothetical protein FT Mll5403 SWALL:Q98BW2 (EMBL:AP003006) (149 aa) fasta scores: FT E(): 3.9e-13, 36.55% id in 145 aa" FT /protein_id="CAE39861.1" FT /translation="MRIADAQWIPSTPHQTWDALQDPDVLQKCLPGCIKVERRTPTEYE FT LVVRAKVAGLETDYQGEILLCDLDPPHSCTVAFEGKGLASGLAIGTAQVNLSPKDDGTR FT LSYTVAAMAGGKLAELGESTIMKAGNKIVEKFFAAFIDHMAGQPRLAPPPPPPEPEPRG FT LTNSRWSWAVALCVVLVILGYHTFFK" FT misc_feature complement(126718..126774) FT /note="2 probable transmembrane helices predicted for FT BPP0120 by TMHMM2.0 at aa 4-26 and 218-237" FT CDS 127555..128532 FT /transl_table=11 FT /locus_tag="BPP0121" FT /product="NAD dependent epimerase/dehydratase family FT protein" FT /note="Similar to Salmonella typhi Vi polysaccharide FT biosynthesis protein Vipb or TviC or STY4660 FT SWALL:VIPB_SALTI (SWALL:Q04973) (348 aa) fasta scores: E(): FT 1.1e-22, 31.59% id in 326 aa, and to Methanopyrus kandleri FT AV19 nucleoside-diphosphate-sugar epimerase MK0724 FT SWALL:AAM01938 (EMBL:AE010366) (309 aa) fasta scores: E(): FT 3.3e-31, 37.17% id in 312 aa" FT /protein_id="CAE39862.1" FT /translation="MKLEGAKILVIGGAGFIGSFVVAELLKHPVAEVVIYDNFARGKQS FT NIDEYLSDPRCRIYPNGGDIRDIDLLNDAMQGMDGVVHLAAMWLLHCKDFPRTAFHVNI FT EGTFNVLEACVRNNVKRLVYSSSASVYGDAVEVPMTEEHPFNNRNFYGASKIAGEAMCH FT AFHDRYGLSYVGLRYMNVYGPHQDQTAAYTGVIPIMLNKIDANEAPVINGDGTQAYDFV FT YVEDVARCNVLALTSEATDQFYNVGTGVQTSIKELCDTILDMKDSGLQVQYRPYSEDDA FT RRMVQNRIGCPVKASRDLGFTYQYALTEGLQKLIDWRAKNGAQS" FT misc_feature 127555..127623 FT /note="Signal peptide predicted for BPP0121 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.606) with cleavage site FT probability 0.564 between residues 23 and 24" FT misc_feature 127555..128521 FT /note="O-antigen biosynthesis cluster" FT misc_feature 127555..158521 FT /note="O-antigen biosynthetic locus" FT misc_feature 127576..128520 FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 3.5e-59" FT misc_feature 127966..128052 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 128529..129689 FT /transl_table=11 FT /locus_tag="BPP0122" FT /product="DegT/DnrJ/EryC1/StrS aminotransferase family FT protein" FT /note="Similar to Bacillus subtilis spore coat FT polysaccharide biosynthesis protein SpsC SWALL:SPSC_BACSU FT (SWALL:P39623) (389 aa) fasta scores: E(): 7.6e-50, 41.12% FT id in 372 aa, and to Salmonella typhi putative FT lipopolysaccharide biosynthesis protein STY2527 FT SWALL:Q8Z542 (EMBL:AL627274) (385 aa) fasta scores: E(): FT 2.8e-46, 38.38% id in 383 aa" FT /protein_id="CAE39863.1" FT /translation="MSGAAAKRSIAISLPMTGEEEWQAVREPLMSGWLTQGPKVAAFEK FT AFAQRHEVAHALAVTSCTTGLHLALAGLGIGPGDEVIVPSFTWVATANAILYCGGTPVL FT VDVDRETFNIDIAQVAGKVTPRTRAVIAVHLFGLCADIDALRAALPASVAIVEDAACAA FT GASWNGRPAGSLGEVGVFSFHPRKSVTTGEGGMVTTNDPELAERMNQMRNHGASISEEQ FT RHHGPRPWILADFDLLGYNYRMTDLQGAVGQVQLAKLDGFIDERARWAQFYREQLGDLK FT WLRLPAEPAGARHGWQSFVTWVDPAHAPMPRNDMMQRLQEQGIATRPGTHAVHMLGYYR FT EQYGYRPEDFPAARDCNDCTMAIPLHNRMTEDDYRYVVAAIRAFGG" FT misc_feature 128571..129674 FT /note="HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 1.1e-145" FT misc_feature 128670..128699 FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT CDS 129810..131684 FT /transl_table=11 FT /locus_tag="BPP0123" FT /product="putative asparagine synthetase" FT /note="Similar to Bacillus subtilis asparagine synthetase FT [glutamine-hydrolyzing] 3 AsnO SWALL:ASNO_BACSU FT (SWALL:O05272) (614 aa) fasta scores: E(): 4.1e-43, 30.24% FT id in 625 aa, and to Desulfovibrio gigas putative FT asparagine synthetase Asn SWALL:Q9KJI6 (EMBL:AF168003) (643 FT aa) fasta scores: E(): 9.7e-57, 33.28% id in 664 aa" FT /protein_id="CAE39864.1" FT /translation="MCGVAGLIHLDGAAVDPAVLQGMTDAIAHRGPDGEGHWIDGNVGL FT GHRRLAIIDLSPAGHQPMISADSRYVLSYNGEIYNFRELRAELETAGYRFKSRTDSEVL FT LYAVIAWGLKALKRFNGMFAFALWDCHERRLILARDRYGIKPLYYAEQGGTLAFGSEQK FT AILALPGFRRKLDKAALLEYFTFQNIFTSKVLLEDIQILPAGHYAIVEPDRCASISLTQ FT YWDFCFREPDVAATDQEYREELDRLFVQAVKRQLVTDVELGSYLSGGMDSGSIAAVAAA FT EHPYIKTFTCGFDLNSASGIELGFDERSKAEYMSYCFKTEHYEMVLKAGDMERILPHVA FT CHLEEPRVGQSYPNFFAAKLASRFVKVVLSGAGGDELFAGYPWRYYRAVVNDDFEHYVD FT KYYNFWQRLLPNSELKRVFAPIAGEVEHVWTRDIFRNVFRHHADQLYRPEDYINHSLYF FT EAKTFLHGLLVVEDKLSMAHGLETRVPFLDNDLVEFAMRCPIRLKLNNLAEVVKINENE FT TGNKVRKFFEKNRDGKTILREVMNHRLPADISKAEKQGFSAPDASWFKGESLEFVRRKL FT LDGHSPLYEIMDAATVRELVNEHLGGIRNRRLLIWSLLSVDAWMRQTF" FT misc_feature 129813..130259 FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II, score 5e-25" FT misc_feature 130479..131432 FT /note="HMMPfam hit to PF00733, Asparagine synthase, score FT 1.1e-14" FT CDS 131817..132755 FT /transl_table=11 FT /gene="wbmU" FT /locus_tag="BPP0124" FT /product="putative formyl transferase" FT /note="Similar to Escherichia coli methionyl-tRNA FT formyltransferase Fmt SWALL:FMT_ECOLI (SWALL:P23882) (314 FT aa) fasta scores: E(): 5.5e-15, 26.68% id in 311 aa. FT Identical to Bordetella bronchiseptica putative formyl FT transferase Bblps1.01 SWALL:O87974 (EMBL:AJ007747) (274 aa) FT fasta scores: E(): 6.5e-107, 100% id in 274 aa. CDS is FT extended at the N-terminus in comparison to the B. FT bronchiseptica protein" FT /protein_id="CAE39865.1" FT /translation="MGRIALFGSTDITVAVAEAILRAGHAIASITHVPRPFEISYSDKP FT VAISRQADVAQWCVAHAIPAIEYAGVDKSVEHFRNNPADLCVVAGWYHMLPSRLRDLFR FT LGAVGLHASRLPELRGGAPLNWAILAGFERTAVTLFALGDGVDDGPVYGQEAIDVGPND FT YIGELVARCNAASVVLVERCISGILDGSLVPAVQDGVASYGAQRSPEDGVIDWAAPAAG FT IARLVRAVSRPYPGASTWLDGRLVRIWRAGEYRAAAVYGAPGQILCLPGGQVVVATGKG FT AIEIEEAEDDGGQSVMVALRRSSHRRFRSQS" FT misc_feature 131820..132368 FT /note="HMMPfam hit to PF00551, Formyl transferase, score FT 7.5e-11" FT misc_feature 132438..132734 FT /note="HMMPfam hit to PF02911, Formyl transferase, FT C-terminal domain, score 6e-31" FT CDS 132752..133540 FT /transl_table=11 FT /gene="wbmT" FT /locus_tag="BPP0125" FT /product="hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.02 SWALL:O87975 (EMBL:AJ007747) FT (262 aa) fasta scores: E(): 1.3e-109, 99.61% id in 262 aa" FT /protein_id="CAE39866.1" FT /translation="MTGTREGAAVETDSALKYHYSDFTREAYRSLLRTARASYVFRSYD FT TFDPQERFVLWRHDLDFSVHAASALAEIEAQEQVSSTYFLLLHSDFYNLLERDVSRKVE FT RILALGHRIGLHFDCGYYGISSVAQLEDMLAMEARLLERVFGQRIDVFSFHNPDAWMLQ FT QREVRYAGLLNTYSEFFRDQVGYCSDSNGYWRHRRLADVLEQAADHSLQVLTHPGWWVD FT EPMSPRDRIARCAEGRAAATMRKYDEDLACFGRDNIGKST" FT misc_feature 133511..133534 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 133537..134256 FT /transl_table=11 FT /gene="wbmS" FT /locus_tag="BPP0126" FT /product="hypothetical protein" FT /note="Identical to Bordetella bronchiseptica hypothetical FT protein Bblps1.03 SWALL:O87976 (EMBL:AJ007747) (239 aa) FT fasta scores: E(): 1.1e-105, 100% id in 239 aa" FT /protein_id="CAE39867.1" FT /translation="MKFARISDIDPGSPETWRGKVFLSFDIDWAEDFVLLDTLELIERA FT GVPATWFATHQTALLERIERHPGFELGIHPNFNNLLSAGSAQSAEQVLDAALALAPGCR FT SVRSHSLTQSTRLLALFADRGLGHECNALIPWDAGIPLRPWRHWDGTTVRVPHCWEDDI FT ACLAGWPLEGDAFYWYDPDGLNVLDFHPIHVYLNTETLERYEASRPVHRDSAALPAMRH FT GGQGVRTFLEKILVGAR" FT CDS 134253..135182 FT /transl_table=11 FT /gene="wbmR" FT /locus_tag="BPP0127" FT /product="putative formyl transferase" FT /note="Identical to Bordetella bronchiseptica putative FT formyl transferase Bblps1.04 SWALL:O87977 (EMBL:AJ007747) FT (309 aa) fasta scores: E(): 8.5e-127, 100% id in 309 aa. FT Weakly similar to Escherichia coli methionyl-tRNA FT formyltransferase Fmt SWALL:FMT_ECOLI (SWALL:P23882) (314 FT aa) fasta scores: E(): 4e-11, 27.74% id in 292 aa" FT /protein_id="CAE39868.1" FT /translation="MKFVAIGRHEILLRTIEMLVDAGHELAGVLTAAPAPEYRADVDDF FT RSLAARKGVPCHVSNRYGPEMVAALAGLGAEIAVSYNFPTVIGHAAIDSFPRGILNAHG FT GDLPRYRGNACQAWALIQGEPAIGLCVHYMVADELDSGDVIAKAMLDVDHHTTIGTVAQ FT WMEQATPPLFVAALERLRHDPSYVLYRQCDDGRPALRCYPRQPSDGRIDWTKPAIDVVR FT HINASGHPYAGAFFYFESNAYRVDEAQWIDGGAYLAVPGQVAGRNPDGSVDVACGGGGL FT CRLARIADSAGHWDQPVNHIKSMRARLA" FT misc_feature 134253..134783 FT /note="HMMPfam hit to PF00551, Formyl transferase, score FT 1.1e-14" FT misc_feature 134865..135167 FT /note="HMMPfam hit to PF02911, Formyl transferase, FT C-terminal domain, score 7e-28" FT CDS 135205..136029 FT /transl_table=11 FT /gene="wbmQ" FT /locus_tag="BPP0128" FT /product="putative formyl transferase" FT /note="Identical to Bordetella bronchiseptica putative FT formyl transferase Bblps1.05 SWALL:O87978 (EMBL:AJ007747) FT (274 aa) fasta scores: E(): 1.5e-108, 100% id in 274 aa. FT Poor database matches to the full length CDS. C-terminal FT region is similar to internal region of Escherichia coli FT UDP-D-glucuronate dehydrogenase ArnA SWALL:AAL23678 FT (EMBL:AY057445) (660 aa) fasta scores: E(): 9.8e-15, 33.33% FT id in 204 aa" FT /protein_id="CAE39869.1" FT /translation="MTTQVSKPRLALFVDNVGAAELWPAIGTLAPVCALVAAGIRPQYI FT ESLSALADEMGCSLLIQPRHDAPTYAGFVQQLAQTAPTRILVHSYSMILRPDVLSLVDY FT DALNIHAALLPRNRGPNPVQWALIHDEAETGVTLHYLDDGLDTGDIVAQERIGISDADT FT WVTLSKRLRQATGRLIERNMAALLDGRLPRTPQAQREATKNSRLTAESPRLDPYGMSDR FT ELFNWVRAQVDPLGGGYVEHAGGERLHVREYVALRDIPALRRRLCAWLEEVR" FT misc_feature 135226..135753 FT /note="HMMPfam hit to PF00551, Formyl transferase, score FT 9.7e-10" FT CDS 136026..136745 FT /transl_table=11 FT /gene="wbmP" FT /locus_tag="BPP0129" FT /product="conserved hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.06 SWALL:O87979 (EMBL:AJ007747) FT (239 aa) fasta scores: E(): 1.4e-102, 99.58% id in 239 aa. FT Similar to Mycobacterium tuberculosis hypothetical protein FT Rv1507c SWALL:YF07_MYCTU (SWALL:P71786) (231 aa) fasta FT scores: E(): 4.7e-17, 30.76% id in 221 aa" FT /protein_id="CAE39870.1" FT /translation="MSRSDARICAIHQPNFFPWLGYFDKIVRADIFVLLDDVQYQKTGG FT NWTNRVQMMIGQGPKWVTAPVDRSYSGVRQIREIRFSPVEREWREKLCSTITASYGRAA FT YFREVYPFIEPIIMNDSDFLSDYNSHAIAALCDYLEIESSKLVRSSQFNLQNNATDLLI FT DITKAVGAVRYLCGGGAQGYQEDEKFPRHGIQLIYQNFCHPIYTQANDAPFQPGLSIVD FT ALMHCGRRGVIELLNRK" FT CDS 136753..138051 FT /transl_table=11 FT /gene="wbmO" FT /locus_tag="BPP0130" FT /product="hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.07 SWALL:O87980 (EMBL:AJ007747) FT (432 aa) fasta scores: E(): 1.9e-191, 99.76% id in 432 aa" FT /protein_id="CAE39871.1" FT /translation="MLEFVKNFIEKDFFKKNYVFLVKYVFGPLFRFRRKFLPRKAVLYV FT GQSYYHAWNCSHALRRLGWRADVLNWDMHEGSQIYYHGEDFRFTKHGEEGYQEQLDFYL FT KALWKYDIFHFSNIGGMVFGFPFQLSISEKFHRNFEIEALRYLGKKIVYSNSGCLDGVS FT QTTFSQWPPASVCSICVWRTRPDVCSDEKNLSWGKYRNQMADYQCLIGGNHADYNDDPR FT VHEEPEFYCIDPDLLHPDLEVPVRFKKEYPQGTICLYHAVGNLKDRTDDSGVNIKSTHV FT YLPLIDRLRSEGYPIELLSVTDVPNRDVRFYQVQADIFLDMLSFGFFGANGREALMLGK FT PLVCFLRPEWLESMRAEIPEYVDELPVVNATPETVYDVVKDLIENPEKRAEIGRRSRAF FT ALKWHSTDAAGRRMDRVYRRLLRDQGYDASRAP" FT CDS 138048..139217 FT /transl_table=11 FT /gene="wbmN" FT /locus_tag="BPP0131" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Aeromonas salmonicida ABC transporter FT protein AbcA SWALL:ABCA_AERSA (SWALL:Q07698) (308 aa) fasta FT scores: E(): 2.1e-22, 39.68% id in 252 aa. Identical to FT Bordetella bronchiseptica ABC transporter ATP-binding FT protein Bblps1.08 SWALL:O87981 (EMBL:AJ007747) (389 aa) FT fasta scores: E(): 2.3e-132, 100% id in 389 aa" FT /protein_id="CAE39872.1" FT /translation="MSIAIRRDEEIALSCHGVSKSFVISGEQNIWRMFCALPVRGEVFA FT ALRDVSLEVPRGKIVGILGRNGAGKSTLLRVLGGVYQPTSGTVDVRGQVCGLFEMGGFG FT NRELSGREYATRYLTVMGAPRKDRGDLLADIAEFSELGADFDRKILTYSAGMAARLYFS FT TATAMRHEIYLIDELLSVGDEHFQAKCWIRMRNLLLNGASGILVTHDWVSTLKLCQQSH FT ILERGSIVASGRTDAAVVKYLDLPVPDGALARFCDSDRATWHAVAGEDAVFEFDIESEE FT DIPLVFTYSVELMRIGIGWDIMLLGQRPIGSGNGRRRVQLKVPALPLAPGEYSLTVGLI FT KEKTRAEDEAVICDARGWTTGNGYVLEVSGTLEQGTTILPMEISGWIDD" FT misc_feature 138216..138728 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.5e-21" FT misc_feature 138237..138260 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 139210..140418 FT /transl_table=11 FT /gene="wbmM" FT /locus_tag="BPP0132" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Myxococcus xanthus O-antigen export FT system ATP-binding protein RfbB SWALL:RFBB_MYXXA FT (SWALL:Q50863) (437 aa) fasta scores: E(): 1.2e-27, 36.5% FT id in 378 aa. Identical to Bordetella bronchiseptica ABC FT transporter ATP-binding protein Bblps1.09 SWALL:O87982 FT (EMBL:AJ007747) (402 aa) fasta scores: E(): 6.6e-128, 100% FT id in 402 aa" FT /protein_id="CAE39873.1" FT /translation="MTDSDLWIQVSDVRKHYAIGKSGLSDALVSAQSSANTGPGEKIAV FT DGISLTIRNGERLGIVGRNGAGKSTLLHMVAGLSAPTAGKIDVHGRVTAIMTLGLGLRE FT HASGRENIYIDGEVQGKSRVEIDAVIDEIIEFAELGEFIDMPVRTYSTGMKSRLAFAMI FT SCLEPEILIIDEALSAGDAKFSAKATRKIQEICAKGRIVILVSHSMASIQSMCNRCLWI FT DQGKIVMDGLPDQVCKAYIDAVRSEDEAKLLERFRDEASTRFSLDGWDVDALYVLQGDT FT ATQRVLLEAGEDALIRTKIQVPTGCEEAQLVMSVTRLDGLVVTQRRIALDKYTEAGVAR FT VQFAMRPLVLGQGVYRLEIAAELGQALVASRSMIFEVFVRQPPTGGVPMLLYPSEATAS FT LLS" FT misc_feature 139372..139884 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.7e-41" FT misc_feature 139393..139416 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 140425..141216 FT /transl_table=11 FT /gene="wbmL" FT /locus_tag="BPP0133" FT /product="ABC transporter integral membrane protein" FT /note="Identical to Bordetella bronchiseptica ABC FT transporter integral membrane protein Bblps1.10 FT SWALL:O87983 (EMBL:AJ007747) (263 aa) fasta scores: E(): FT 5.6e-98, 100% id in 263 aa. Similar to Myxococcus xanthus FT O-antigen export system permease protein RfbA FT SWALL:RFBA_MYXXA (SWALL:Q50862) (260 aa) fasta scores: E(): FT 3.2e-18, 26.8% id in 250 aa" FT /protein_id="CAE39874.1" FT /translation="MRIFGLERRDIGLIYNFFVLNVRDKYLGSRLGSVWAIANPLCMLG FT IFTFVFGFVYKAKLPGADTTLAYVTWLISGYGPWIALSEALMAGTMSVVSASGLVKNLA FT FKTEILPLAAVATGVVPLTVSLVFLTILLVADGSMPSWHVAWIPLVILLQFFFIAAIAL FT WLSAITVFVRDISFVLPSVLTVLMFATPVFYALDMMPQVVRRVSEFNPLYIIVEGYRQP FT LIHHASPSAWGLAYVFGISLVIFYSGMKAFRRVKGNFEGAL" FT misc_feature 140434..141204 FT /note="HMMPfam hit to PF01061, ABC-2 type transporter, FT score 5e-99" FT misc_feature join(140521..140589,140647..140715,140749..140817, FT 140860..140928,140947..141015,141115..141168) FT /note="6 probable transmembrane helices predicted for FT BPP0133 by TMHMM2.0 at aa 33-55, 75-97, 109-131, 146-168, FT 175-197 and 231-248" FT CDS 141213..143813 FT /transl_table=11 FT /gene="wbmK" FT /locus_tag="BPP0134" FT /product="hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.11 SWALL:O87984 (EMBL:AJ007747) FT (866 aa) fasta scores: E(): 0, 99.65% id in 866 aa" FT /protein_id="CAE39875.1" FT /translation="MTVARYTEASASGLARHFDAVIILTDQPWREDPLDPRYVRARHFA FT GQLPVVVVEPGSVTPTGPLRMSGGIEVVAMTAQPTHEAVDRLTEALHEHSIRRPLFWLE FT DCRAYLELLDCWPNAMTVYRASGGGVAVGAGATVALREAATLFRQAMPRYVHLLVATDE FT HVAATYRRYGEYAGRIEVLADAYGSNFGQYLSVPQEAVPSRSVLYHGPIDEALDYELLH FT QLVHLLPDWKFVFCGAADDQLPAWRGLAAHGNVSHTPTPSAADLGAQCADAMAGILPFN FT MDARWTSRRRAAQALYEAAGLPVLDRAEGECQLQAQAWVAALHSSLAEGRAEAGADHKP FT GSSLLDAASHGAALGAMVEDAYLALLRRPLDHRLNVLVLYDDRWTHIGTVEEHLGAFQK FT YSRHNIFYLPVTRQSPEQDRRLAAEIDLSVFDVVIMHYAVRLSLKDYLPEPMALRIRRF FT TGLKVLFIQDEYDTTNTAKAWIKRLAFDIVYTCVPPAGREYVYPASDFHWTEFLSTLTG FT YVPEDPSLGQYLLPLREREILVAYRGRMLPYFYGSLGWQKYRIGVDVKALAQERGLPVD FT IEVDDTKRIYGTDWYRFLGSARATLGTESGSNVFDFDGNVRSEIERRLAQNPELPFAEL FT YNELLEPLERNIRMNQISPKIFEAIRLRTALVLFEGEYSGALTPGVHYIALSQDYANID FT EVFARLQDLDFLERMTERAYEDIVASGRYSYRSFVEGVDADIEQRWLCGPRARIYAAPV FT LATDRHGAAHVIMPSGTSGWCLSTSILSGTLQREQLAGHMSTAMGNWAQIMLAERKAAR FT RAYLRAQPRRYAGAAYRRSIALARRVWHRIPMPAAFRRQVVRGVRAAKTRLMGR" FT CDS 143869..146505 FT /transl_table=11 FT /gene="wbmJ" FT /locus_tag="BPP0135" FT /product="hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.12 SWALL:O87985 (EMBL:AJ007747) FT (878 aa) fasta scores: E(): 0, 99.54% id in 878 aa" FT /protein_id="CAE39876.1" FT /translation="MRRVERLLLVCYYDPNGIETVLDNIGYVKAYSAFHVDILNLFGAA FT SALTRGEGYRLAAYDGVIIHNTISYNPANLESIDRQFVPALSQYEGVKIIFKQDEQYRT FT LAVAEFIGSRAFDLVFTCVDAQERAKVYPPDVVGDRVVFRQMYTGYVTPKLRARTTTGV FT ERDIDISYRGSLQPLYFGRLAYDKRRIGDEVLHAAQGTGLKTDISSRWEDRLMGEDWFR FT FLARSKSTLGVESGASIFDFDGAVEKLCGELEQRRSDFTDEHKYSEWVLQQLEPYEGNV FT YYNQISPRHFEAGAARTLQVMYEGRYSDIFQPWKHFVPLRKDLGNFQQVCEYVLDPRLR FT GEIVDRVYDEIIANPIYSMKHFIGELDQAVAEALERKPNRAAPTRRVPADGRDNVLLLC FT AHLPAADPRIGWVADFAPAGIRVHVMGMADDIAAPLVRQRAQGGLEITQPRGTGADWER FT LALMQDEQGAGLDVLCRLRMLEQMSQAQLNVLVDGGVTAERAYEFNWMCSYLRRTSQAL FT VAAAMNASGYSAIVAADFDSLIAAVVLKRLYGIPVLYDAHEFWPTSLGPATAPWEVALW FT QRLERRLLSEVDKSISVSPQLAAHMSNFYGHSFEAVPNCEPLQAATEPAPQHAPRDECV FT FLFQGNFMPGRGLALLIEAWGRTHPSAILQLRGPDRPYKRELERLAERTGLLGTRIFFP FT EAVAENALVAAAAQADVGLVPYEPTTLNSKYCSPNKLSQYMAAGLPILANRLEFVAQEI FT SLAGCGSVVDFAHGDELVRVVDHYAVDAQLRQREGECGRRYFRQHFHWEAVSAPLYTAL FT ASLSALPGKHESFSINVAGIGDGVGAGVDPRPVWKRTLSRLWGMLPTPAKSALKPMLLK FT LIARFRG" FT CDS 146606..148516 FT /transl_table=11 FT /gene="wbmI" FT /locus_tag="BPP0136" FT /product="putative asparagine synthetase" FT /note="Identical to Bordetella bronchiseptica putative FT glutamine amidotransferase Bblps1.13 SWALL:O87986 FT (EMBL:AJ007747) (636 aa) fasta scores: E(): 0, 100% id in FT 636 aa. Similar to Bacillus subtilis asparagine synthetase FT [glutamine-hydrolyzing] 1 AsnB or Asn SWALL:ASNB_BACSU FT (SWALL:P54420) (632 aa) fasta scores: E(): 2.9e-44, 32.76% FT id in 641 aa" FT /protein_id="CAE39877.1" FT /translation="MCGIFGALWHQGKSVSAIEQQLQVGIARQQHRGPDGHGTWIDPQG FT RLGLAHVRLSIIDLVSGAQPMRGNSGNVITYNGEIYNYIELRRELGEDSFETTSDTEVI FT LRAYEKWGERCVDRLEGMFAFAIWDAKRGEMFVARDRFGIKPFYYACVQGGFYFGSEVK FT ALTPFLNRVETDANALHDYFAFQFCLGEKTLFAGVRQLKPAHCGYVGRDLELKQRQYWE FT VQYDLDWDHTEKYFVEQVREKLQHSVDMHMRSDVEVGAYISGGVDSSLVAAMARHGRRS FT SRFQGFTGKFALGDAFDESRYAQALADEHDILLHQVDITEDDFVNDIAKVIYHLDQPVA FT GPGSFPQYAVSRLAKDHVKVVLGGQGSDEMFGGYARYLIAYWEQCIKGALDGTMHDGNY FT IVTYESIIPNLRTLRNYKPLIQEFMAEGIFDSRDKRYYRLINRSNTFGNVVNWGMFEGI FT ASSFDDFKQIFWGKNVGKESYFDSITHFDFKTLLPALLQVEDRMSMAHGIESRVPFLDH FT KLIELVATVPANVKFQNGELKRLLRVAFQDMLPQAIRERKDKMGFPVPLQVWMRKGGKA FT REFILDTFRSQNARSRAYLAPGFDIEKMMEQEGLFSRNIWAFLSLELWQQQFHDVHRQT FT I" FT misc_feature 146606..146623 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 146609..147055 FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II, score 2.2e-29" FT misc_feature 146624..146647 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 147257..148159 FT /note="HMMPfam hit to PF00733, Asparagine synthase, score FT 3.2e-132" FT CDS 148545..149486 FT /transl_table=11 FT /gene="wbmH" FT /locus_tag="BPP0137" FT /product="nucleotide sugar epimerase/dehydratase" FT /note="Identical to Bordetella bronchiseptica putative FT nucleotide sugar epimerase/ dehydratase Bblps1.14 FT SWALL:O87987 (EMBL:AJ007747) (313 aa) fasta scores: E(): FT 1.3e-126, 100% id in 313 aa. Weakly similar to FT Lactobacillus casei UDP-glucose 4-epimerase GalE FT SWALL:GALE_LACCA (SWALL:O84903) (331 aa) fasta scores: E(): FT 1.2e-10, 29.45% id in 309 aa" FT /protein_id="CAE39878.1" FT /translation="MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH FT PNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAA FT KKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSGLDFVT FT FRLANVVGPRNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATVRAVDGVGHGA FT YHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEF FT TPLKETVAAAVAYFREYGVSGGYTHLKINENK" FT misc_feature 148554..149441 FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 1.4e-15" FT CDS 149491..150423 FT /transl_table=11 FT /gene="wbmG" FT /locus_tag="BPP0138" FT /product="nucleotide sugar epimerase/dehydratase" FT /note="Identical to Bordetella bronchiseptica putative FT nucleotide sugar epimerase/ dehydratase Bblps1.15 FT SWALL:O87988 (EMBL:AJ007747) (310 aa) fasta scores: E(): FT 1.6e-120, 100% id in 310 aa. Weakly similar to FT Lactobacillus casei UDP-glucose 4-epimerase GalE FT SWALL:GALE_LACCA (SWALL:O84903) (331 aa) fasta scores: E(): FT 4.2e-12, 28.61% id in 325 aa" FT /protein_id="CAE39879.1" FT /translation="MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVA FT GLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAAS FT KAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLMMSDVPVVSLRL FT ANVTGPRLAIGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADLSLQEGRPTGVFN FT VSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKVD FT FKDTITGQLAWYDKYGVTDIFSHLSAPKT" FT misc_feature 149497..150381 FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 5.4e-16" FT CDS 150428..151501 FT /transl_table=11 FT /gene="wbmF" FT /locus_tag="BPP0139" FT /product="nucleotide sugar epimerase/dehydratase" FT /note="Identical to Bordetella bronchiseptica putative FT nucleotide sugar epimerase/ dehydratase Bblps1.16 FT SWALL:O87989 (EMBL:AJ007747) (357 aa) fasta scores: E(): FT 3.9e-140, 100% id in 357 aa. Similar to Lactobacillus casei FT UDP-glucose 4-epimerase GalE SWALL:GALE_LACCA FT (SWALL:O84903) (331 aa) fasta scores: E(): 5.6e-13, 28.57% FT id in 329 aa" FT /protein_id="CAE39880.1" FT /translation="MPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDN FT LLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHE FT NNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSM FT SKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKA FT LKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKIN FT EITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLAV FT IEQIMRKHDSALATYGK" FT misc_feature 150470..151441 FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 3.5e-34" FT CDS complement(151864..153045) FT /transl_table=11 FT /gene="wbmE" FT /locus_tag="BPP0140" FT /product="putative exported protein" FT /note="Almost identical to Bordetella bronchiseptica FT putative secreted protein Bblps1.17C SWALL:O87990 FT (EMBL:AJ007747) (393 aa) fasta scores: E(): 6.3e-146, FT 99.74% id in 393 aa" FT /protein_id="CAE39881.1" FT /translation="MIRKSYIIGLLLTLLLGSGLGGYALQRATSATPAATNATAKPAAE FT PATREVEKSNESPPPAGLATPSGYDGGQLPCMQKESMERYACLVRTAGEGAANVTPGGK FT GEAAGASPLTQMFMVTEAMNLIRTLASSARYSWNQSTLGAGFIKPNMAQQEICLDGGFG FT ICGNHQYLFLELMHRLGLEARSVGFWYIDPNANSRASHAAAEVLVDKKWRYVDITWGSL FT WLAQRNDLLSAMSLDEVLAGKGHRFTGTTDVWYIAQRMAKYDPFIYLKGRDLQVTRDGG FT GLLQIKLADQAEKFAHMPNYVGTVPERATMEMQISSNHKHTELQVNISGMAGCKQSRLQ FT IGDEEFDIRPGTILTNTFQQQDRISVQGSDPHCYVVLSSIEPIRSAKRASAPN" FT misc_feature complement(152926..153045) FT /note="Signal peptide predicted for BPP0140 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.394 between residues 40 and 41" FT CDS complement(153168..154190) FT /transl_table=11 FT /gene="wbmD" FT /locus_tag="BPP0141" FT /product="putative membrane protein" FT /note="Almost identical to Bordetella bronchiseptica FT putative membrane protein Bblps1.18c SWALL:O87991 FT (EMBL:AJ007747) (340 aa) fasta scores: E(): 5.8e-131, 99.7% FT id in 340 aa" FT /protein_id="CAE39882.1" FT /translation="MAALRPAHTDKAEDFAVESMHEFAERSEIGRGMKLPELTQSSRSA FT IVVATIVASGLLLLGLLTAPALEAQDNRSNQDSARASSRAIKTLAVDTAKLSCLTPALI FT QQIKSDLPNIADAYNECRAEITERTKDMQLDDLGHRVVFATIATNASAPFGSFSAYKLP FT DLLAAPSLTSDNYLLLLGNYLDALHVTPKRSQMRMLGFDGGATGNYAQGMITISGTSLL FT LDPTIGMVVKIGFDDLLSSRRAAARNFVIAYMHDDPGITAVMKRISNSVYNGLYKPSDL FT LYYFFSPEYFMAFNGIIPAGQLKNVHPPLLRFPTPGATSLARTQAQNQQAAPKPAATEN FT " FT misc_feature complement(153993..154058) FT /note="1 probable transmembrane helix predicted for BPP0141 FT by TMHMM2.0 at aa 25-47" FT CDS complement(154266..156152) FT /transl_table=11 FT /gene="wbmC" FT /locus_tag="BPP0142" FT /product="putative glutamine amidotransferase" FT /note="Almost identical to Bordetella bronchiseptica FT putative glutamine amidotransferase Bblps1.19c SWALL:O87992 FT (EMBL:AJ007747) (628 aa) fasta scores: E(): 0, 99.04% id in FT 628 aa. Similar to Bacillus subtilis asparagine synthetase FT [glutamine-hydrolyzing] 1 AsnB or Asn SWALL:ASNB_BACSU FT (SWALL:P54420) (632 aa) fasta scores: E(): 2.5e-34, 29.7% FT id in 643 aa" FT /protein_id="CAE39883.1" FT /translation="MCGVLGAWWRHHDEHEDARFAAGLRKLAHRGPDDRGSEHFAAPHG FT RLSLGHTRLAVIDLSAAGHQPMHADADRLAVVFNGEIYNYRELRSELRQIDAIFRGDSD FT TEVLLAAWQHWGVAALRRFKGMFAFALYDRRQQTLTLARDAFGIKPMYYHAAPERLLFG FT SELPAVQALLPHPPRLNWQRAYDYLAYGQYDQPPDTFIAGIRQLPAGHLLTLDLRTGRA FT GEPMAWDDPASQECRPIGFQEAAEELRARFLDNVRLHLRSDVPIGAALSGGIDSSAIVC FT AMRWLEPDLPIQTFSFISDDAHRSEERWVDLVNQHCGATGHKIHIAPHELLDDLDDLIR FT VQGEPVGSTSIYAQYRVFKLAREHGVVVTLDGQGADELLGGYGGYPTERLASLLETSRL FT GAAARLLRQQGRGAPARLLQAAALAAGGRHLANLRHATGRQHAPAWLDAQVLRDQGVTM FT REPAHAWAAATPLRGRRLVNELAHALYHRGLGALLRHGDRNSMRFSVESRVPFLTQDLA FT EFALSLPERYLVSDSGQTKHIFRKAMRGIVPDLILDRDDKIGFATPEQQWMQATAPQMR FT QWLVDAADIPFLRNAEVTAQFDAMIAGATPFSWQAWRWVNFQRWMQHATVLP" FT misc_feature complement(154482..155480) FT /note="HMMPfam hit to PF00733, Asparagine synthase, score FT 4.2e-12" FT misc_feature complement(155691..156149) FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II, score 3e-18" FT misc_feature complement(156135..156152) FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT CDS 156214..157314 FT /transl_table=11 FT /gene="wbmB" FT /locus_tag="BPP0143" FT /product="hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.20 SWALL:O87993 (EMBL:AJ007747) FT (361 aa) fasta scores: E(): 7.6e-148, 99.44% id in 361 aa. FT C-terminus is weakly similar to the the C-terminal regions FT of Xylella fastidiosa hypothetical protein XF0885 FT SWALL:Q9PEZ3 (EMBL:AE003928) (443 aa) fasta scores: E(): FT 0.21, 24.77% id in 327 aa" FT /protein_id="CAE39884.1" FT /translation="MSNAIMAGLFWLGDMRIAYLTFELPDTRTGVGKKILAQGNFWRAA FT GNQVRNFVLRAPAFPALNEVEFLCQRRPGGPMVAAMLSGARIGAALEAWRPDVIYARQM FT LWWPGALRALRAAPLIIEYNSIARNEYRSSSKLKYLLEITSSRYFPRQARGIVAVTPEL FT LATVPATQAEGIVIGNGYDFAKAVPRAAPDNARARLLLVGSLGQPWLGADKVARMAALM FT PEYDFDVVVPGLKLAGPPNLYCHGALFDADLAARYAATDVALGTLALHRKGMAQAAPLK FT TREYLAYGIPVVGGYDDPDLDGAAYWLNIGNAEDNIDRNIENIRNFVTQWRGRLPDRGD FT IESRLGFSGKECARLDFFERVRQHAG" FT CDS 157304..158521 FT /transl_table=11 FT /gene="wbmA" FT /locus_tag="BPP0144" FT /product="putative glycosyl transferase" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.21 SWALL:O87994 (EMBL:AJ007747) FT (405 aa) fasta scores: E(): 1.7e-167, 99.75% id in 405 aa. FT Poor database matches. C-terminus is weakly similar to the FT C-terminal region of Escherichia coli putative colanic acid FT biosynthesis glycosyl transferase WcaL SWALL:WCAL_ECOLI FT (SWALL:P71243) (406 aa) fasta scores: E(): 0.00051, 22.75% FT id in 334 aa" FT /protein_id="CAE39885.1" FT /translation="MPVRRIALITNGYPDIYARERSFILPELKALLAYGHQVTLVPVRE FT VTEVDPDLPDGVAVERQLAHLYRPWQLPATVLWMMFRGYFWREAWQCLGRGRLRYLGHF FT FKESVRATNTLRMQSALRDYDVLYTYWFKGESTGISLMPGTHARRLTRAHGYDLYEDRP FT NNEGYIPYREMTLPRLDRVVVLSEEARAYLEQRYPASVGRTVVSPLGVAHESDENPGPE FT ADRIVLVSCSYPTPNKRLPLIGQLAAAVACARPSVKVVWMHFGCRREEAGLPVDFAGPP FT NLSVQFAGEAPNEHIRRWYATRPVSFFVNLSQSEGQPVSIMEAMAFGIPVMATGVGGIP FT EMLRHGGGMTLPEQPDVNAVAREMLSLLDDPSRYQAMREAARETQLAYFNTSANHRTLA FT DLIGEF" FT misc_feature 157934..158455 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 3.4e-10" FT CDS complement(158539..160413) FT /transl_table=11 FT /gene="bplL" FT /gene_synonym="wlbL" FT /locus_tag="BPP0145" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0082" FT /protein_id="CAE39886.1" FT /translation="MTLPYAIRRLFVDLPRPFKQMLAIVLDAVILLGAFHLALWLRFEL FT FFLTDQYLFLSLLACAGGIAALAAFGVYLYILRYMSERVLAAILGGIVVSVMVVTAGNT FT FLQLATISRGVLVLYAALALVGLIGVRLIARKLLFPADHHMADPRTPVLIYGAGGAGSQ FT LAMALRAGPHYRPVAMLDDDKRKHRLVVNGLRVYPPEQLPKLIDRHNIRQLLIAMPSAP FT PKQIRSIVEAAEPYRLRIRLVPSMRELIDPTNGVRLRDVQVEDLLGRDPVAPIDTLLGR FT CVTDRVVMVTGAGGSIGSELCRQILALRPRKLVLFEIAEPALYAIEQDLRQRIGERNIE FT IAGVLGSVRDAAHCLAQLQEHGVQTIYHAAAYKHVPIVEHNVSEGIRTNAFGTLNMAET FT AIQAGVLDFVLISTDKAVRPTNVMGASKRLAELILQAHAQIQDKTRFSMVRFGNVLGSS FT GSVVPLFRRQILEGGPITLTHPEITRYFMTIPEAAQLVLQAGAMGESGSVFVLDMGEPV FT LIRELAERMVRLYGLTVKNSDQPDGDIEIRITGLRPGEKLYEELLIGEDSRETLHPRIM FT RATEYSLPYETLMEQLRMLDRSLQMCSPRQAAELLGQIVREYASVTYA" FT misc_feature 158539..173214 FT /note="Lipopolysaccharide biosynthesis locus" FT misc_feature complement(158563..160149) FT /note="HMMPfam hit to PF02719, Polysaccharide biosynthesis FT protein, score 0" FT misc_feature complement(158884..158919) FT /note="PS00135 Serine proteases, trypsin family, serine FT active site." FT misc_feature complement(join(159901..159957,160018..160083, FT 160096..160161,160183..160248,160294..160350)) FT /note="5 probable transmembrane helices predicted for FT BPP0145 by TMHMM2.0 at aa 21-40, 55-77, 84-106, 110-132 and FT 152-171" FT CDS complement(160462..161709) FT /transl_table=11 FT /gene="bplJ" FT /gene_synonym="bplK" FT /gene_synonym="wlbjK" FT /locus_tag="BPP0146" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0083" FT /protein_id="CAE39887.1" FT /translation="MCAVALGFSGSSIYVLDPLRPFHFGAALILALIALDRQWRRAVLD FT SALTRWLAATAAVLLIQLLWVEHTDRYLRFLAFLLTGVCYTVLADALVRRRVDFAEGLY FT PIVLYWLITAAMPIYDAWTGSGRFRMSYPLTGGVWYNINDMATALVFANLIWLLIKRKL FT SFPLYLTCWFYALAMNRRTILLAASVLGLLYLLGYARRLKHGNRALLAGALLATSAAAL FT VLHHGNFQFGTLPSLAPRAQVGAGAVLTPASTAAADETIQSAQAGEDMPPVDEIGVIAN FT NGDHSTAYRVQLLLDMYAQIRDMPWWQWAFGLGLGQLNLMWPATDAQWASPHFFWLEMF FT FHLGLLWVAFLGWLLVRSDSTGRICLITAAIAGMAPSSMIYLQPFWFLVGVCVAVLPQK FT NGAPSRPAAFPQHASQ" FT misc_feature complement(join(160552..160617,160639..160704, FT 160735..160791,161017..161082,161113..161163, FT 161233..161298,161344..161409,161431..161496, FT 161512..161568,161605..161670)) FT /note="10 probable transmembrane helices predicted for FT BPP0146 by TMHMM2.0 at aa 13-35, 47-66, 71-93, 100-122, FT 137-159, 182-199, 209-231, 306-325, 335-357 and 364-386" FT CDS complement(161759..162463) FT /transl_table=11 FT /gene="bplI" FT /gene_synonym="wlbI" FT /locus_tag="BPP0147" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0085" FT /protein_id="CAE39888.1" FT /translation="MMTLLPLLVIASYSIIHLLEYLSYYARVAGRMAGKPVTGYAIQNA FT TTTVTRFFYLALMPLLGFLVDKQVPTSLYLQMGLAAMFGAALLSLLGYWLRYSWIALLT FT NAVRKRAGQPPLRVEEIRTALEAPASLPKKRIALLAAIVFLCYCLGVLLSYFFALVFHE FT YRSTISQLSGLINGVATVLLTFVLEPRIAGIVDARPTHDVYHAIQAMLNGRLIAIGLLA FT PALFFEVCIGFV" FT misc_feature complement(join(161765..161830,161894..161959, FT 161990..162055,162164..162229,162269..162322, FT 162386..162451)) FT /note="6 probable transmembrane helices predicted for FT BPP0147 by TMHMM2.0 at aa 4-26, 47-65, 78-100, 136-158, FT 168-190 and 211-233" FT CDS complement(162460..163566) FT /transl_table=11 FT /gene="bplH" FT /gene_synonym="wlbH" FT /locus_tag="BPP0148" FT /product="putative glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0086" FT /protein_id="CAE39889.1" FT /translation="MLGPARSIHTIRWANGLALRGLQVHLLSLETPDLSLYDERIVQYR FT LPWRAPLGYFLAAPRLRALLKRIDPDLLNVHYATGYGLLARRARFSPVLLSAWGSDIYE FT FPNSSTWHKALLQRNLDHATALAATSHAMQREMRGLTRRPIFVTPFGIDEALSQPAQSV FT QAPAADGPIVIGTVKALETHYGIDTLIQAFALLRQALAASQPGMAERLVLRIYGAGSQL FT QRLRAQAQAAHIANQVEFKGRIPHAEVPEALRALDVYVALSRMDSFGVAILEACSCALP FT VVVSNADGPAEVVVDGKTGYIVAREDAHAAADRLQELVLNPELRQRLGAAGRARVLSEY FT TWSKSLDMMLDAYTETARLYRATQPASV" FT misc_feature complement(162562..163098) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 4.2e-49" FT CDS complement(163828..164421) FT /transl_table=11 FT /gene="bplG" FT /gene_synonym="wlbG" FT /locus_tag="BPP0149" FT /product="probable sugar transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0087" FT /protein_id="CAE39890.1" FT /translation="MIKRLFDVVCSGLGLLALLPLLALIAIAIKLDSPGPVFFRQERVG FT KGGVPFRIHKLRSMSVRQDPQAGQITVGADPRITRVGKWIRKWKLDELVQLIDVFTGSM FT SLVGPRPEVPRYVVLYPDALRNLILSVRPGITDPASIRFRNENEILGQSSDPERTYREI FT ILPEKLRIQAEYVQTRTFLGDLKIIAHTLLAVAR" FT misc_feature complement(163834..164415) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02397, Bacterial sugar transferase, FT score 5.3e-15" FT misc_feature complement(164335..164400) FT /note="1 probable transmembrane helix predicted for BPP0149 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(164338..164421) FT /note="Signal peptide predicted for BPP0149 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.704 between residues 28 and 29" FT CDS complement(164418..165650) FT /transl_table=11 FT /gene="bplF" FT /gene_synonym="wlbF" FT /locus_tag="BPP0150" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0088" FT /protein_id="CAE39891.1" FT /translation="MPPAARLSLLQRSSTMSDFLPFALPDIGEAEIQAVTESMRSGWLT FT TGPNAREFEREFAAYMGADVEAVAVNSATAGLHLALEAIGVGPGDEVITTTHTFTASAE FT VARYLGAEPVLVDIDPATLCISPAAIERAITPRTRAIVPVHYGGLSCDMDSILEIARKH FT GLKVIEDAAHALPASWQGRRIGSLESDLTVYSFYATKTLATGEGGMVVTRDPALAKRCR FT VMRLHGIDRDAFDRFTSKKPAWYYEIVAPGFKYNMTDTAAAMGRVQLQRVQQMRDRRAQ FT IAAAYDQAFADLPLTLPPSPGRTPGVERAAHRDDDEHSWHLYAIRIHPQAPLKRDDFIV FT RMTENGIGCSVHYVPLHLQPYWRDRYGLTPDMYPHSQAAFEGMASLPIYSRMTDADVQR FT VIASVRQLLHP" FT misc_feature complement(164436..165578) FT /note="HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 2.8e-201" FT CDS complement(165668..166927) FT /transl_table=11 FT /gene="bplE" FT /gene_synonym="wlbE" FT /locus_tag="BPP0151" FT /product="probable glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0089" FT /protein_id="CAE39892.1" FT /translation="MNILLINHYAGSPRYGMEFRPYYFGREWIGHGHQVKVAASTISHI FT RARAPQAGGRLTRENVDGIEYLWYATLPYQGNGARRLLNMLQFSARLYGLRRDLGGWRP FT DIVIASSTHPYDVLPAARLARQTGARLVFEVHDLWPLTPRLLGGFKAWHPMIASMQYAE FT DYAYRHADLTVSMLPCALPYMRERGLDPRRYAHVPNGVPVTEYSSPDFDNPDYLRVRAQ FT IRQLREQCDFVLAYAGTHGHANALDMLLQAMARLRDQPIGLLLLGDGPDKPELKRLAGQ FT LGLRHIAFADPVPRPAVQAVMADIDAAYIGLRRSPLFQFGVSPNKLFDYMLSACPVVQS FT IESGNDIVADARCGVSVPAEDPAALAAALHGLRALPAAERQAMGRRGRDYVLARHDYPV FT LAQQFLDAVQSVTPRRAASR" FT misc_feature complement(165758..166276) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 2.6e-05" FT CDS complement(166951..167937) FT /transl_table=11 FT /gene="bplD" FT /gene_synonym="wlbD" FT /locus_tag="BPP0152" FT /product="UDP-N-acetylglucosamine 2-epimerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0090" FT /protein_id="CAE39893.1" FT /translation="MVHTGQHFDANMSDVFFDELGMQTPTHQLDIHGGGHGDMTGRMLV FT ALEQVMQAEKPDVVLVYGDTNSTLAGALAAVKLHIPVAHVEAGLRSFNLRMPEEVNRIL FT TDRISRWLFTPTDSATRHLAAEGQSGEKVVQVGDVMYDVALHHGARVTAEGRALAAHGL FT KPGGYVLATIHRAENTDDAQRLTTIVRALQALAAERQVVWPLHPRTRGILARLGLLDEL FT ASTVTLLEPVGYLDMVQLEKYAALIATDSGGVQKEAFFHRIPCVTLRDETEWTELVDAG FT WNRLAPPVSSAVVAQAVQDALREQPRDVQPYGDGQAARRIVDALAAH" FT misc_feature complement(166960..167904) FT /note="HMMPfam hit to PF02350, UDP-N-acetylglucosamine FT 2-epimerase, score 1.1e-184" FT CDS complement(168047..169147) FT /transl_table=11 FT /gene="bplC" FT /gene_synonym="wlbC" FT /locus_tag="BPP0153" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0091" FT /protein_id="CAE39894.1" FT /translation="MQFIDLKTQYQALRDTINPRIQAVLDHGQFIMGPEVKELEAALCA FT YTGAKHCITVASGTEALLISLMALGVKAGDEVITTSFTFVATAEVIALLGAKPVFVDVE FT PDTCNIKVSEIEAKITPRTKAIIPVSLYGQCGDMDEVNAVAARHGLPVIEDAAQSFGAT FT YKGRKSCNLSTIGCTSFFPSKPLGCYGDGGALFTNDDELAQAMREIRVHGQSGRYYHTR FT IGVGGRMDTLQCAVVLGKLERFDWEIAQRIKIGARYQQLLADLPGGACTVTVRPDRDSV FT WAQFTVMVPNREAVIAQLKEAGIPTAVHYPRPIHAQPAYEQYAEGAGATPVSDDLAARV FT MSLPMHPDLDEATQDKIVAALRQALN" FT misc_feature complement(168062..169117) FT /note="HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 4.1e-180" FT CDS complement(169151..169726) FT /transl_table=11 FT /gene="bplB" FT /gene_synonym="wlbB" FT /locus_tag="BPP0154" FT /product="probable acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0092" FT /protein_id="CAE39895.1" FT /translation="MTTIHPTAIVDEGARIGANSRIWHWVHICGGAEIGAGCSLGQNVF FT VGNRVRIGDRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKNEYRDTLVR FT QGATLGANCTIVCGATVGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQLDL FT PLAGNGQARCPHTGDLYILENGVCRLGE" FT misc_feature complement(169166..169192) FT /note="PS00572 Glycosyl hydrolases family 1 active site." FT misc_feature complement(169358..169411) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.47" FT misc_feature complement(169529..169582) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.55" FT misc_feature complement(169583..169636) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.14" FT misc_feature complement(169637..169690) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.25" FT CDS complement(169730..170941) FT /transl_table=11 FT /gene="bplA" FT /gene_synonym="wlbA" FT /locus_tag="BPP0155" FT /product="probable oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0093" FT /protein_id="CAE39896.1" FT /translation="MRTMRIRFGINNQRDLSGKSLRDSRYYCRLFSPAAVRGGIRRISA FT IYLNPSAFMSSLPITDRKIRFGLVGCGRISKNHIGAIAQHGDRAELVEICDTNPEALQA FT AEAATGARPFSSLSDMLAQGNADALVLATPSGLHPWQAIEVAQAGRHVVSEKPMATRWE FT DGKRMVKACDEAGVRLFVVKQNRRNATLQLVKKAIEQGRFGRIYMVTVNVFWTRPQEYY FT DAARWRGKWEWDGGAFMNQASHYVDLLDWLVGPVESVYAYTATLARRIEAEDTGVAALR FT WRHGAMGSINVTMLTYPQNLEGSITILGEKGTVRVGGVAVNRIDEWKFAEPHPDDDKIR FT EANYETTSVYGFGHPLYYDNVINCLRGDCEPETDGREGLQSLALLTAIYRSARDGVRIP FT LPLD" FT misc_feature complement(170012..170359) FT /note="HMMPfam hit to PF02894, Oxidoreductase family, FT C-terminal alpha/beta domain, score 1.2e-28" FT misc_feature complement(170393..170752) FT /note="HMMPfam hit to PF01408, Oxidoreductase family, FT NAD-binding Rossmann fold, score 7.9e-46" FT CDS 170958..171920 FT /transl_table=11 FT /gene="rfaC" FT /gene_synonym="waaC" FT /locus_tag="BPP0156" FT /product="probable heptosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0094" FT /protein_id="CAE39897.1" FT /translation="MVHMLPAISDIARYVPDTQIDWVAEEAFADIPRWHPAVNEVIKVA FT HRRWRKAWWSEPVRQERRALAERLRSVSYDVVLDMQGLLKSAWLVRQTRGVRHGLDWRS FT AREPLASLFYNVRHRVEFWQPAVVRQRKLAALTFGYNYAGSPDFGLQAFGRAAQADDAP FT ADPGRRMLHLAADRGYAVIMPSASRDDKLWPEDDWRAVFRRLQDAGCALRLLAGNEQEA FT ERARVLVAGMEGVEVLPRMDLTSVAQVLAGARLMVGLDSGLTHLSAALGRPTIGIYRAS FT TPVRTPLVGPSYTASLGDRGASPSREAVLASVEQALAAA" FT misc_feature 171141..171899 FT /note="HMMPfam hit to PF01075, Glycosyltransferase family 9 FT (heptosyltransferase), score 5.9e-110" FT CDS 171922..173214 FT /transl_table=11 FT /gene="kdtA" FT /gene_synonym="waaA" FT /locus_tag="BPP0157" FT /product="3-deoxy-D-manno-octulosonic-acid transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0095" FT /protein_id="CAE39898.1" FT /translation="MGRGVYTLALRGLAPLIWLWMWRRARRAGGQWELFAPARFGRAGA FT RAPAPLAAPVWVHAVSLGETRAAQPLVQALLERGLPVLLTHTTATGRAEGERLFGAAIG FT RGQLQQAWLPYDFPGATRRFLARHAPRCGLLIEREVWPNLLAAARAQGVPMALVSARFS FT ASSLRQAGWLGQALREALAGLGRVLAQTDEDGARLCQAGANAYTVTGSLKFDVALPEAQ FT LRVGHAWAGATGRPVIALASTREGEDAMFIEAIGAVQAHRAATPRPLILLIPRHPQRFD FT EAAAQLQAAGLAYARRSAGSGEPGPHIDVLLGDTLGEMPFYYAAADVAIVGGSFARLGG FT QNLIEACAAGTPVIVGPHTFNFKDAARDAIAAGAALRAPDARTALDWALQLLAEPARRQ FT AMSEAARAWTAAHAGATRRTLDALEDWLAPR" FT CDS complement(173240..174076) FT /transl_table=11 FT /locus_tag="BPP0158" FT /product="putative exported protein" FT /note="Similar to Bordetella bronchiseptica putative FT membrane protein Bblps1.18C SWALL:O87991 (EMBL:AJ007747) FT (340 aa) fasta scores: E(): 1.9e-06, 23.59% id in 195 aa" FT /protein_id="CAE39899.1" FT /translation="MKIKQLVTQTLLVCTVSAVTSTAVIYLSKKIDARRQTAAQIVDAR FT ERALLHEFASKVTNFEEFRFGYGPGRLSSPCLDKAVEQIRDAGGDVRGAFAECKSSFAA FT KLPVARKGMSEGDLLAAFIAVVVNRLAPYGSSTASTPAEILAAKTLNCSQHSIMTAALI FT ARYVPDAEVIEKVGLDGGHIGNHALVYYQSKTARMVLDGTSAMITFASIDDILAGKLVS FT TYDIYDFFQSTDESLEIFRRNVRGAYRLGAVRPEHVIYRESVPLMAKPAPLQANPS" FT misc_feature complement(174008..174076) FT /note="Signal peptide predicted for BPP0158 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.958) with cleavage site FT probability 0.510 between residues 23 and 24" FT CDS complement(174247..175230) FT /pseudo FT /transl_table=11 FT /gene="baf" FT /locus_tag="BPP0159" FT /product="Bvg accessory factor (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0097" FT /note="Pseudogene. The stop codon of this CDS, as predicted FT in pertussis and bronchiseptica, has been replaced with TGC FT (cysteine). Hence the amino acid sequence of this CDS has FT been extended and fused to the downstream CDS. Similar to FT Bordetella pertussis bvg accessory factor Baf FT SWALL:BAF_BORPE (SWALL:Q45338) (267 aa) fasta scores: E(): FT 9e-98, 97.75% id in 267 aa" FT /db_xref="PSEUDO:CAE39900.1" FT misc_feature complement(174328..174393) FT /note="1 probable transmembrane helix predicted for BPP0159 FT by TMHMM2.0 at aa 279-301" FT variation complement(174427..174429) FT /note="TGC in parapertussis; TGA stop codon in pertussis FT and bronchiseptica" FT misc_feature complement(174622..175227) FT /note="HMMPfam hit to PF03309, Bordetella pertussis Bvg FT accessory factor family, score 3.6e-82" FT CDS complement(175227..176093) FT /transl_table=11 FT /gene="birA" FT /locus_tag="BPP0160" FT /product="putative biotin protein ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0098" FT /protein_id="CAE39901.1" FT /translation="MGAITIAPMSAEVRSLSLPEPAALARAIAARLPAFRDISWVGSTG FT STNADLLARARAGGGARPCLLGAHLQESGRGRAGRPWQNRVGAALMFSCAFDVDLPPSQ FT LPALSPLAGMAACEALRQLVGQPAGLLVKWPNDVQWHDAKLAGVLVESVRNPAGTGHAV FT VIGMGLNLHGGDALSQALQRSVADWNDVAGPGEKGPDAAADLVATVARAWQGAAHTLQQ FT EGFGAFGARFARVDALAGRPVNVIDRGEILYTGAASGVDDHGRLLVQAADGMRPVSVGE FT ISIRPQA" FT misc_feature complement(175239..175382) FT /note="HMMPfam hit to PF02237, Biotin protein ligase C FT terminal domain, score 2.8e-15" FT misc_feature complement(175545..175988) FT /note="HMMPfam hit to PF03099, Biotin/lipoate A/B protein FT ligase family, score 2e-29" FT CDS 176162..177298 FT /transl_table=11 FT /locus_tag="BPP0161" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0099" FT /protein_id="CAE39902.1" FT /translation="MPMPSLPSTAGAATLPLTLDHGVCHVSGDWSMQALAAPGEVERRR FT AALARVDPDQRWDLRGVERLDTIGAHLLWGAWGQQLPERVRWSDGQREVFQTLQRNRGE FT ALPAPAPADRWGWLRAIGDAVFDAGRNGRALIIMFGQLVLDLGAFLRRPSRGPWREISA FT QVYRTGAQALGITALVGFLIGVVLSYLSAQQLQMFGADRFIVRLLGVSIVRELGPVLAA FT ILVAGRSGSAITAQIGVMRVTQELDAMLVMGISHGQRLILPRVIALAITMPLLVVWTDA FT MALLGGMLAAQMQLGVSAQWFLTSLPDAISLTNYWIGMFKGVSFGILIALVACHFGLCI FT QPNTESLGRGTTTSVVTSITGVILVDALYAVIFSSIGI" FT misc_feature 176162..176269 FT /note="Signal peptide predicted for BPP0161 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.737) with cleavage site FT probability 0.723 between residues 36 and 37" FT misc_feature 176543..177283 FT /note="HMMPfam hit to PF02405, Domain of unknown function FT DUF140, score 3.7e-58" FT misc_feature join(176669..176737,176981..177049,177107..177175, FT 177212..177280) FT /note="4 probable transmembrane helices predicted for FT BPP0161 by TMHMM2.0 at aa 170-192, 274-296, 316-338 and FT 351-373" FT CDS 177298..178137 FT /transl_table=11 FT /locus_tag="BPP0162" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0100" FT /protein_id="CAE39903.1" FT /translation="MGSVAQQNLFSATDLAVAPVIAVRGLRTAFGDHVVHDNLDLSVYP FT GEILALVGGSGTGKTVLLRQIIGLERPAAGTIEVLGRRVQELEPAERRRLSHRWGMLFQ FT AGSLFSSLSVFDNVALPLRELRTVPEDLVCDVVMCRLAMVGLTSKDADKRPADLSGGMV FT KRVALARALSLDPELLFLDEPTAGLDPLRSDEFVDLVRSLHRQLGFTVVMVTHDLDTLL FT ALATRVAVLADKRVIVCDTVREVLKVDHPFIRSFFLGERGRRALGDLAPKETGNGKP" FT misc_feature 177433..177999 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.6e-57" FT misc_feature 177454..177477 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 177514..177567 FT /note="PS00216 Sugar transport proteins signature 1." FT CDS 178124..179071 FT /transl_table=11 FT /locus_tag="BPP0163" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101" FT /protein_id="CAE39904.1" FT /translation="MENRSHALLAGLFTLALLVAAALVAIWVGRDRAALKPYVIVSATS FT VSGLSAQSTVRYQGVPVGKVQSLGFNPDKPAQVRISIGVAPDTPITESTWAELGVQGVT FT GLGNIELRDDGTSTRRLASSAAMPATIPLRPGFFQRFEQRGGEILHNVEQVSARLERLL FT SNENVQATTATLQNIAAITTDLRQAATELRPALAQVPPLVDSLQAMSRNTGQAAQEIAG FT LAQAARQALARLDAPDGPLAMATRSMRDIAWAAARLDAQTLPAVSGMASSIDSAARSAT FT TTLRRVGDTPQSLLFGPPPTVPGPGEPGFAGFGR" FT misc_feature 178124..178198 FT /note="Signal peptide predicted for BPP0163 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.352 between residues 25 and 26" FT misc_feature 178151..178555 FT /note="HMMPfam hit to PF02470, mce related protein, score FT 0.00031" FT CDS 179072..179677 FT /transl_table=11 FT /locus_tag="BPP0164" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101A" FT /protein_id="CAE39905.1" FT /translation="MDMKKAIIVLSALLLAGCGAGRMAAPPALFDLGADVAATPALPAR FT QPIVLAFEAVPYLSDTGVIWRVGDSASPHAYARSRWASAPAELVRQRLVERLSHQGPVL FT GAGMGAGLAQVQVTLTRFEQVFAADGQASVGHVAMQAVLLQDRQVVGQVRIAREAPAAT FT QDAAGGVQALRQATDAAADELAGWLAGRVAAAGVRAGS" FT misc_feature 179072..179143 FT /note="Signal peptide predicted for BPP0164 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.988 between residues 24 and 25" FT misc_feature 179093..179125 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 179707..180360 FT /transl_table=11 FT /locus_tag="BPP0165" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101B" FT /protein_id="CAE39906.1" FT /translation="MSARTETQVFTGAAGNIDCAIDWPAHAPRGWALVLHPHSLQGGAR FT DNKVVTTVARACVQHGLAAVRPNFRGVGESAGEFDKSIGETEDMLALVAQVRERYPEFA FT ASPWVLGGFSFGTAVAAQTYAALAAAGDPSLPRALMLMGPAVNRFERSATEVPADTLLV FT HGEADDVVPLAEALEWARPRSLPVVVVPGASHFFHGKLLVLRQLVQDRLRIALD" FT CDS 180493..181749 FT /transl_table=11 FT /locus_tag="BPP0166" FT /product="putative penicillin-binding protein precursor" FT /EC_number="3.4.16.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0102" FT /protein_id="CAE39907.1" FT /translation="MKTLPDTAIAPVVLSRRVLASAVLAAMLAAAAPAGAQQQAAPATP FT VAAAAPAAGGAVGAVGDLAAVPVPTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKI FT MTAYVVFNALQEKRLTLEQQVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGND FT ASVALAEAVGGSESAFAALMNQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAVHL FT LSDYPDYYHYYKQKSYTYNKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGD FT RRILTVLVGADSEATRAEESLKLLNWSFQNFDTVKLYDQSQPGLDARVWEGKVENVKLG FT PPNPVWLAVPRGKAAEIKPVAQRTDPLVAPLTKGQQVGTLQLTLDGKTLRVEPLVVQED FT VERAGFFGRMADTVKRWFQ" FT misc_feature 180493..180600 FT /note="Signal peptide predicted for BPP0166 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.908 between residues 36 and 37" FT misc_feature 180667..181434 FT /note="HMMPfam hit to PF00768, D-alanyl-D-alanine FT carboxypeptidase, score 8.2e-110" FT CDS 181752..182696 FT /transl_table=11 FT /locus_tag="BPP0167" FT /product="probable class IV aminotransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0103" FT /protein_id="CAE39908.1" FT /translation="MKAAPQAARRHRRAAMPAPILSKELPMIPGMPGDSQVYLNGEFTR FT LDEAKISVLDRGFIFGDGIYEVVPVYDGKVFRMTEHLNRLDRSLAALRIAAPMDRAGWE FT SVIAGLIARSAQPTCIIYLQVTRGVCKRDHAFPTEPITPTVFGMAAAFSPPGAAQRTQG FT LSAIAIDDERWLHCEIKSVSLLGNVLAKQQAVDAGVDEVVQFRDGWLTEGSSTNIWMVS FT GGKLLAPPKNNLILEGIRYGLMGELAEAAGLPFEARRISREEVLAADELMLTSATKEVL FT PIVRLDGKAVGAGKPGPVYEQLRAGYDARIAAL" FT misc_feature 181869..182675 FT /note="HMMPfam hit to PF01063, Aminotransferase class IV, FT score 6e-53" FT CDS 182772..183047 FT /transl_table=11 FT /locus_tag="BPP0168" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0104" FT /protein_id="CAE39909.1" FT /translation="MHNIPPEESLIEYPSDFPIKVMGKQHPEFAQTLTEVVLQFDPAFD FT PASVEMRPSKGGNYMGLTFTVRATSREQLDSLYRALHGHPMVSIVL" FT CDS 183055..183717 FT /transl_table=11 FT /gene="lipB" FT /locus_tag="BPP0169" FT /product="lipoate-protein ligase B" FT /EC_number="6.-.-.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0105" FT /protein_id="CAE39910.1" FT /translation="MIKWLARPADYGSVWDAMKAFTAARGPGTADEIWLCEHAPVYTLG FT QAGRPEHLLNPGLIPVVHCDRGGQVTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQAT FT LATLRELGLEQACRKPGAPGIYVPQPGGELAKIAALGVKVRNGYAYHGLALNIDMDLSP FT FLGINPCGYEGLRTVDLAACGVRTSVERAGELLAAQLARAHGHAVQQRAAALAGVPG" FT misc_feature 183172..183543 FT /note="HMMPfam hit to PF03099, Biotin/lipoate A/B protein FT ligase family, score 1.5e-31" FT misc_feature 183250..183297 FT /note="PS01313 Lipoate-protein ligase B signature." FT CDS 183779..184780 FT /transl_table=11 FT /gene="lipA" FT /gene_synonym="lip" FT /locus_tag="BPP0170" FT /product="lipoic acid synthetase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0106" FT /protein_id="CAE39911.1" FT /translation="MSTLVESPVPSNDSQAAAPAAYDPTQKQKSQAKTARIPIKVVAAE FT KLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTATFMIMGD FT KCTRRCPFCDVGHGRPDPLDTQEPENLARTIAALKLSYVVITSVDRDDLRDGGAAHFVE FT CIAKVREYSPDTRIEVLVPDFRGRLDRALHILNSGPPDVMNHNLETVPRLYKQARPGSD FT YAHSLKLLVEFKKLHPEVPTKSGLMLGLGETDEEILQVMRDMREHNVDMLTIGQYLQPS FT EHHLPVLRYVHPDTFAMFEREAYAMGFTHAAVGAMVRSSYHADQQAHAAGVN" FT misc_feature 183989..184756 FT /note="HMMPfam hit to PF02546, Lipoate synthase, score FT 3e-175" FT CDS complement(184795..185343) FT /transl_table=11 FT /gene="rfbC" FT /gene_synonym="rmlC" FT /locus_tag="BPP0171" FT /product="dTDP-4-dehydrorhamnose 3,5-epimerase" FT /EC_number="5.1.3.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP0107" FT /protein_id="CAE39912.1" FT /translation="MKLTPLAIADVVLIEPQVFGDERGCFFESFNQDRLDAQLGRRIRF FT VQDNHSCSRAGVLRGLHYQILHPQAKLVRVVAGEAYDVAVDLRRGSPTFGRWTGAYLSA FT RNRHQLWIPEGFAHGFLALSDDTECLYKATDYYAPEHERCVRWDDPQLKVDWPLQGQAP FT ILSVKDRQGVALARADTYA" FT misc_feature complement(184810..185337) FT /note="HMMPfam hit to PF00908, dTDP-4-dehydrorhamnose FT 3,5-epimerase, score 2.6e-106" FT CDS complement(185401..186357) FT /transl_table=11 FT /gene="rfbD" FT /gene_synonym="rmlD" FT /locus_tag="BPP0172" FT /product="dTDP-4-dehydrorhamnose reductase" FT /EC_number="1.1.1.133" FT /note="ortholog of Bordetella pertussis (BX470248) BP0108" FT /protein_id="CAE39913.1" FT /translation="MGGGHRQRRIPPLARYALRHMNILLLGRTGQIGDALLAHPLAWAR FT LAALERRQADLRDLGRLAAVLDAYAPRILINAAAYTEVDRAEAEPELALRINAQAVAVM FT ADYARRNNALLVHYSTDYVFDGKRARAYRETDAAHPLNAYGRSKLAGEQAIAASGCPHL FT ILRTSWVYASHGANFVKTILRLARTRAELSVVADQHGAPTWAGRIAAVTWQAIDAHRRR FT RLPDGLWHLSAGGHVSWHGLACHIVARARRAGLALSLDPAHIRPVTTAQYPLPAPRPAN FT SRLDCGALRDALEPELPDWQVDLDAVVDALAARAHTL" FT CDS complement(186294..187355) FT /transl_table=11 FT /gene="rfbB" FT /gene_synonym="rmlB" FT /locus_tag="BPP0173" FT /product="dTDP-glucose 4,6-dehydratase" FT /EC_number="4.2.1.46" FT /note="ortholog of Bordetella pertussis (BX470248) BP0109" FT /protein_id="CAE39914.1" FT /translation="MSILVTGGAGFIGSNFVLGWLASGDEPVINLDLLTYAGNAANLAA FT LRDDPRHLLVHGDIADAPLVRRLLREHRPRAIVNFAAESHVDRAIRAPDAFVQTNVVGT FT FALLEAARAYCAEQDDAAAAAFRFLHVSTDEVYGSLAPQAAPFTETHPYQPNNPYSASK FT AASDHMVRSYRHTYGLPAITTHCCNNYGPRQFPEKLIPLVIHHALAGRALPLYGDGMHV FT RDWLYVADHCAALECVLRDGQPGRTYNIGAHCERTNLEVVHAVCALLDQWRARPDGQPH FT ASGIAFIPERPGHDRRYAIDAGKIQRELGWRAATSFEAGLRETVRWYLNHPQWVADIAS FT GAYRHWLDTHYDT" FT misc_feature complement(186360..187349) FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 5.3e-160" FT misc_feature complement(186834..186920) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS complement(187391..187951) FT /transl_table=11 FT /locus_tag="BPP0174" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3090" FT /protein_id="CAE39915.1" FT /translation="MANRLSVIATRTGDDGSTGLGDGSRVGKDTARIAALGDVDELNSV FT LGLLRAETLPAEMDADLSTIQHDLFDMGAELCIPGHIALADEQVAHLDARLSHYNAGLA FT PLREFILPGGSRAAALCHLGRTVARRAERSVVALARAEVVNAPVRQYLNRLSDLLFVLA FT RHVNQAQGARDVYWASRHARPAD" FT misc_feature complement(187448..187930) FT /note="HMMPfam hit to PF01923, Protein of unknown function FT DUF80, score 5.5e-63" FT CDS 188374..188679 FT /transl_table=11 FT /locus_tag="BPP0175" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3088" FT /protein_id="CAE39916.1" FT /translation="MAFSRKYSSRMAVATAMAVVSLATPLAFAQQADATGEVRRVDAAA FT DKVSIKHDAISALDLPAMTLVCQIDPALLAGIKPGDKVRFTATRKDGRYVVTAISK" FT misc_feature 188374..188460 FT /note="Signal peptide predicted for BPP0175 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.982 between residues 29 and 30" FT CDS complement(188722..190056) FT /transl_table=11 FT /gene="hslU" FT /gene_synonym="htpI" FT /locus_tag="BPP0176" FT /product="ATP-dependent Hsl protease ATP-binding subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP3087" FT /protein_id="CAE39917.1" FT /translation="MSANHMTPDEIVAELDKFIIGQNRAKRAVAVALRNRWRRQQVAEP FT LRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRD FT LTEYSIKQTRELEMRRVRSHAEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKR FT LREGKIDDLEIEIEIAQPMPQMDVMTPPGMEEMAEQLRGMFAGLARDKKKSKKIKVREA FT FKLIVEEEAAKRVNEDDLRAAAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRD FT LLPLVEGTTVNTRYGMVRTDHILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAED FT FVSILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTV FT MEKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDLARYVL" FT misc_feature complement(188896..189897) FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA), score 6.1e-06" FT misc_feature complement(189859..189882) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(190078..190617) FT /transl_table=11 FT /gene="hslV" FT /gene_synonym="htpO" FT /locus_tag="BPP0177" FT /product="ATP-dependent protease heat shock protein" FT /EC_number="3.4.25.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3086" FT /protein_id="CAE39918.1" FT /translation="MEQFHATTIVCVRRGNHVALGGDGQVTLGNIVIKGTARKIRRLYH FT DKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRAAVELTRDWRTDRVLRRLEAMLIVA FT DTEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPEAIVKQSLEIAGD FT LCIYTNQNHVIETLGA" FT CDS complement(190765..191229) FT /transl_table=11 FT /gene="dksA" FT /locus_tag="BPP0178" FT /product="putative dnaK suppressor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3085" FT /protein_id="CAE39919.1" FT /translation="MATKAATKKSSKSTSDTAIDLPSEQELLAMPEADYMNDRQLAFFK FT ERLKQLEQDILANAGETTEHLRETQFVPDPADRATIEEEHALELRTRDRERKLLKKVQQ FT AIARIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD" FT misc_feature complement(190783..190995) FT /note="HMMPfam hit to PF01258, Prokaryotic dksA/traR FT C4-type zinc finger, score 5.4e-09" FT CDS complement(191373..192482) FT /transl_table=11 FT /locus_tag="BPP0179" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3084" FT /protein_id="CAE39920.1" FT /translation="MNTARSLDKMVPVTILTGFLGAGKTTLLKRILTEYHGRRVAVIEN FT EFGPESIDNDLLVQDRDEEIIELSNGCVCCTVRGDLMRTLSDLRARREAGELSFERVII FT ETTGMANPGPVCQTFFMDDDIAEYYRLDAVVTVVDAKHGMATLDAQDEAQKQVGFADRI FT LVSKKDLVNDVDYAALHQRLVRINPRAPITPVHFGEADLKSIIDISGFNLNSILDIDPA FT FLADEHPDAAHDHHDHDHGHSHEHDHDHEGECGAHCNHHHHHHHAHHDDEIGAFVFRSN FT KPFDPARLEEFLGGVVQVYGPDLLRYKGILYMKGINRRMLFQGVHMMMGAEPGKAWTAA FT EKPSTKMVFIGRKLPQEIFTRGLEQCLVG" FT misc_feature complement(191430..192359) FT /note="HMMPfam hit to PF02492, Cobalamin synthesis FT protein/P47K, score 2.2e-70" FT misc_feature complement(192408..192431) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(192759..193262) FT /transl_table=11 FT /locus_tag="BPP0180" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3083" FT /protein_id="CAE39921.1" FT /translation="MSASRPTRADTVGAQLDLAESLCTQRGRRLTPIRRKVLELLLVHG FT RSLKAYELLEAMRAEHPGAAPPTVYRALDFLMDEGLIHRLDAVNAWSACHDAAGEPHDL FT LVVCTGCGAVAEISDPDMSRQLAERVARTGFALATHETEIRALCPQCQQNRPAQAHGHT FT HSHH" FT misc_feature complement(192828..193190) FT /note="HMMPfam hit to PF01475, Ferric uptake regulator FT family, score 1.6e-11" FT CDS 193592..194314 FT /transl_table=11 FT /locus_tag="BPP0181" FT /product="putative transport protein ATP-binding" FT /note="ortholog of Bordetella pertussis (BX470248) BP3082" FT /protein_id="CAE39922.1" FT /translation="MAMTAPCIALRGAAFGWHGRPAVHGLTGEFSRGSMTAIVGPNGAG FT KSTLLKGLAGVLRPLAGALECEADLRRRLAWLPQASELERGFPITVADMVALGAWGRVG FT AWRRFDAAETARVHAALRRVGLQDLAGQSLGALSGGQMQRALFARLLLQDAPLLLLDEP FT FSAIDAATTDVLLDLLREQHAEGRTVIAVLHDLDMVRRHFPRTLLLAGRQVAWGETGQA FT LGDANLARARGLAMREAA" FT misc_feature 193688..194227 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 5.7e-46" FT misc_feature 193709..193732 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 194000..194044 FT /note="PS00211 ABC transporters family signature." FT CDS 194311..195207 FT /transl_table=11 FT /locus_tag="BPP0182" FT /product="putative ABC transporter permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3081" FT /protein_id="CAE39923.1" FT /translation="MTLAEWLAGPFADYGFMRRALAGAVALSAGAAPLGVFLVLRRMSL FT MGDAMAHAILPGVAAGYLLSGLSLGAMMIGGLVTGLAVALLAGLVARLTPLREDASFAS FT FYLISLGLGVLLVSLRGSNMDLLHVLFGTVLGLDDAALLLVTAVASATLCILALAYRLL FT VAECLDPGFLRAAGGRGAWVHMLFMGLVVLNLVAGFQVLGTLMVVGLMMLPAAAARFWA FT GSAPGQIALAAVSACAASAVGLLVSFHANVPASPAIILAAGAFYLFSVACGPHGGLLVA FT ARRARRARPWQPEGDLP" FT misc_feature 194347..195129 FT /note="HMMPfam hit to PF00950, ABC 3 transport family, FT score 5.3e-43" FT misc_feature join(194371..194430,194512..194580,194614..194673, FT 194731..194799,194833..194901,194911..194979, FT 194998..195066,195079..195147) FT /note="8 probable transmembrane helices predicted for FT BPP0182 by TMHMM2.0 at aa 21-40, 68-90, 102-121, 141-163, FT 175-197, 201-223, 230-252 and 257-279" FT CDS 195204..196133 FT /transl_table=11 FT /locus_tag="BPP0183" FT /product="putative periplasmic solute binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3080" FT /protein_id="CAE39924.1" FT /translation="MKSRILALAAAVLLAPLVAAAQPLQVVASFSILADIAAQVGGPDV FT AVQSLVGPDGDAHEYEPTPADARKLAAAQVLVVNGLDFEAWLPRLQKAAGFAGRTVVAS FT EGIEPRRLDDAHEEHGDHDHDHDHGHHHHGDLDPHAWQDLANGATYARNIARAFAEADP FT AHAQAYRQRADAYVARIEALDQRVRQLFEAIEPARRKVVSSHDAFGYFGQAYGVRFVAL FT AGVSTDAEPSAADMARIIEQVRRERVPAVFVENIANPRLAQQLVRETQARLGGTLYSDA FT LAQPGKPAGTYLGMFEWNAQQLAAALRP" FT misc_feature 195204..195266 FT /note="Signal peptide predicted for BPP0183 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.799 between residues 21 and 22" FT misc_feature 195216..196127 FT /note="HMMPfam hit to PF01297, Periplasmic solute binding FT protein family, score 2.1e-92" FT CDS 196181..196762 FT /transl_table=11 FT /locus_tag="BPP0184" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3079" FT /protein_id="CAE39925.1" FT /translation="MWIDARAVVEFDAAGRIAAVRQVWRFDDMFGAYATQGLSSKPGGG FT LPPDVLRTMAEDWMKALGEPVSHYFTRVTQGARTLPFGPPRDAAVSFEDGRLTLAFTLP FT LAAPAPARGATAVDIYDPTYFVAYAFDEAGATALHGAPAGCSQAYRPPRPLDWATMQQL FT AAIPADPEALPEELFAITKGLTHRIEVTCP" FT CDS 196753..197721 FT /transl_table=11 FT /locus_tag="BPP0185" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3078" FT /protein_id="CAE39926.1" FT /translation="MSVVRAGALVVLVLGCLAALPAAAQGGHPFGVPEATGAPGWLAGW FT FGQVAMWQAHFYRQLTGAVRAWQAEGGAAWMLIGLSFAYGVFHALGPGHGKAVIASYVL FT ANRQTARNGAWLALLSALAQALVAVALVTVLAVALGATAAAMNRATQWLETAAYAVVSL FT LGAWLVWQKALRPWWGSKGGHGHDHHAHHHAPGCACGHAHAPSARQAAGPLSARKAWAA FT ILAVGLRPCSGALIVLVFALAQGFFLAGVVATLAMGLGTGLTVAMLVALAAGARDAATR FT LGARLSTRRAAMLRQAIEALAAVAVLLLGLSLLGGQLVALR" FT misc_feature 196753..196824 FT /note="Signal peptide predicted for BPP0185 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 24 and 25" FT misc_feature join(196771..196824,196966..197034,197095..197163, FT 197206..197262,197428..197496,197509..197577, FT 197644..197712) FT /note="7 probable transmembrane helices predicted for FT BPP0185 by TMHMM2.0 at aa 7-24, 72-94, 115-137, 152-170, FT 226-248, 253-275 and 298-320" FT CDS 197770..199905 FT /transl_table=11 FT /locus_tag="BPP0186" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3077" FT /protein_id="CAE39927.1" FT /translation="MVCYIVSFNENGTSFCREGNMRFERHPLSAALALALAWQGAHAQA FT SADGTPEAATLAPITVSASPLAGDLDSMTAPAAVLEGDQLLLRRQGTLGDTLDGLPGVH FT ADTFGGGASRPVIRGQTAPRVKVLSDGSELMDASAISPDHAVTTEPLLADKIEVLRGPA FT TLLYGGGAIGGVVNVLDRKIPTAVPQQGIEAEAELRGATGTKERAGAIGITAGSGNFAV FT RVEGLKRRSSDYRVPDWPDGKLAGSYSESGQGTVGMSWITPRGYVGVAFTHLESKYGLP FT GHNHEYEGCHPHGSHLHCGGHDDHGHDEHEEGEAEHDHGHEHGAGDVPYVKLRSNRTDL FT RAEYTDPFAGFEKIRFRGGLTDYRHDEIEGGQLGTRFQNRGYDARLELTHRPLYGWHGV FT VGVQTSYSDFRATGEEAFLPRSKTRAHGLFLLEEYRWADWRVELGARQDWQRVSPQGGA FT PASRTAGTSLSAAAIWDFAPQYSLALSVSRSQRLPSAQELYADGVHLATNTYEIGDPGL FT DRETSRNVDLTLRKHSGDTTFSVSAFHNRVKNYIYANTLDRYEDFRLIEYTQRDAEFTG FT VEGEIRHRFGKVFSAAVFGDYVRGRLTGGGGNLPRIPAARLGVRADAQWQNWAGGVEYF FT HVYRQDDIAAYESSTPGYDMVNATIRYRGKLDRTAYEIYLRGNNLLNKLAFNHASFIST FT VAPLPGRSVLLGVRLTY" FT misc_feature 197770..197898 FT /note="Signal peptide predicted for BPP0186 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.668) with cleavage site FT probability 0.618 between residues 43 and 44" FT CDS complement(199918..200898) FT /transl_table=11 FT /locus_tag="BPP0187" FT /product="putative integrase/recombinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3076" FT /protein_id="CAE39928.1" FT /translation="MSAAPAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQL FT AAAAGLPLERVANGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPAT FT GVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAELVS FT LDLRYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAA FT GAGAQDAAALFVGTRGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHNFASHVLQSAQ FT DLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRADRKTSR" FT misc_feature complement(199966..200544) FT /note="HMMPfam hit to PF00589, Phage integrase family, FT score 2.4e-31" FT misc_feature complement(200605..200865) FT /note="HMMPfam hit to PF02899, Phage integrase, N-terminal FT SAM-like domain, score 4.2e-18" FT CDS complement(200913..201605) FT /transl_table=11 FT /locus_tag="BPP0188" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3075" FT /protein_id="CAE39929.1" FT /translation="MTAHTPTEPLNAHAVAEFLQHNPDFFIEHADVFATLQIPNPHGSR FT AISLGERQIQTLRERTRELEWRLSELIRNANSNETIGDHLSQWCCRMLAEADAQHVPGE FT IALGLAEQFDLNHVALRLWRLEGLPESGYGEPVSDDVRTFADSLKTPYCGTDTEFEAVS FT WLDAKPKSLALVALRPDAEAPTFGLLVLGSDDAARFAPDMGTAFLEAIGKLASAALRRL FT GTPPLAAA" FT CDS complement(201632..202543) FT /transl_table=11 FT /gene="dapF" FT /locus_tag="BPP0189" FT /product="diaminopimelate epimerase" FT /EC_number="5.1.1.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP3074" FT /protein_id="CAE39930.1" FT /translation="MGDNPCMMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRH FT FGIGADQILLVEPATQADADFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLR FT AEIVTGVIVLDEGEDEQVTVDMGSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAG FT LPRSVAISTVAISNPHAVQVVDDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQI FT RLRVYERGAGETLACGTGACAAVAAGVRRGLLDSPVRVHTRGGMLTVDWNGERLRMTGP FT AISVFSGQVDIDRLVFTSGLHR" FT misc_feature complement(201689..202033) FT /note="HMMPfam hit to PF01678, Diaminopimelate epimerase, FT score 1.9e-37" FT misc_feature complement(202148..202513) FT /note="HMMPfam hit to PF01678, Diaminopimelate epimerase, FT score 7.8e-39" FT misc_feature complement(202286..202330) FT /note="PS01326 Diaminopimelate epimerase signature." FT CDS complement(202586..203476) FT /transl_table=11 FT /locus_tag="BPP0190" FT /product="putative acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3073" FT /protein_id="CAE39931.1" FT /translation="MSQFKTRALTAMLRGFARMRPATRQRAGALVGWLSYRLARSRVRI FT VRRNLELCFPGQPEAVRERWTREHFRALGQSIVDRGVLWYGSPEAVREMVTQTGAERIN FT ALIAAGRPVILLAPHFVALDAAATRLTMEVPSGATMYTPQSDPAVDAIVRAGRARFNEV FT FLVSRKDGVRDLVRHLREPRPVYYLPDMDFGRAGSVFVPFFGVPAATLLATAQLARKWN FT AAVLPILDFWDPRTGRYHVEVLPELPDFPGDGSLEDATARLNRELESWVLRCPSQYYWV FT HRRFKTRPLGEPKLY" FT misc_feature complement(202616..203476) FT /note="HMMPfam hit to PF03279, Bacterial lipid A FT biosynthesis acyltransferase, score 2e-59" FT CDS complement(203473..204339) FT /transl_table=11 FT /locus_tag="BPP0191" FT /product="putative acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3072" FT /protein_id="CAE39932.1" FT /translation="MLVTLLRMAAALPLPFLHAAGRLLGRLAYAFPGKYRDRLRANAAQ FT AGYPQPAFARRAAGEIGAMILEMPKVWFRNEQSLGKVVSDDYAIVEAARAEGRGILFLT FT PHLGCFEITARYLARQMPMTVMFRPPRKAALAPVLETARNTSAVNAVPATMQGVREFVR FT TLRRGESVGMLPDQAPGVGDGVWAPFFGRMAYTMTLPGKLASQTGVAVILTAGERLPGG FT RDWRIHYARVPEPLPDGPQEQAALINSAMESLIRRFPEQYLWGYNRYKVPRGAPPAPDS FT ARQEPEQ" FT misc_feature complement(203527..204339) FT /note="HMMPfam hit to PF03279, Bacterial lipid A FT biosynthesis acyltransferase, score 4.7e-17" FT misc_feature complement(204283..204339) FT /note="Signal peptide predicted for BPP0191 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.922) with cleavage site FT probability 0.902 between residues 19 and 20" FT CDS 204487..205785 FT /transl_table=11 FT /gene="metK" FT /locus_tag="BPP0192" FT /product="S-adenosylmethionine synthetase" FT /EC_number="2.5.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3071" FT /protein_id="CAE39933.1" FT /translation="MALVRQVRAKSAKASRPDLPYIAIPGCSAPRNLCAGFRPVREEVS FT VANNDFLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEI FT TTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGVDRSSEDYLN FT QGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRY FT VDGRPAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFV FT IGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGL FT ARQCQVQVSYAIGVAEPINITVYTEGTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLRP FT IYTKTAAYGHFGRSEPEFSWEATDKAAALKQGA" FT misc_feature 204631..204933 FT /note="HMMPfam hit to PF00438, S-adenosylmethionine FT synthetase, N-terminal domain, score 6.5e-53" FT misc_feature 204970..205326 FT /note="HMMPfam hit to PF02772, S-adenosylmethionine FT synthetase, central domain, score 3.1e-71" FT misc_feature 204979..205011 FT /note="PS00376 S-adenosylmethionine synthetase signature FT 1." FT misc_feature 205330..205779 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02773, S-adenosylmethionine FT synthetase, C-terminal domain, score 1e-81" FT misc_feature 205408..205434 FT /note="PS00377 S-adenosylmethionine synthetase signature FT 2." FT CDS 205896..206144 FT /transl_table=11 FT /locus_tag="BPP0193" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3070" FT /protein_id="CAE39934.1" FT /translation="MTDASFPVAPRVESDETPDRPARVFTATDSPCVAVCSTLFDDICR FT GCGRTAMEVANWVFMSEEEKREVWVRIQAQGYPRRNN" FT CDS 206224..207264 FT /transl_table=11 FT /locus_tag="BPP0194" FT /product="putative glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3069" FT /protein_id="CAE39935.1" FT /translation="MRIVLVTDAWHPQVNGVVRTWTTMQGLLQDWGHELIVVSPQGSRT FT VPAPSEPDLRLCLQPGRQLRRVLGDVVPDALHIATEGPLGLAARRMALRRGWRFTTSFH FT TMFPDYLQARMGIPAGLPWRYLRWFHRPSQRVLVPTPTVRDIVARRGLGNLQVWSRGVD FT ARRFAPGPRDFLPELPRPLFLCVGRVAREKNLDAFLSLALPGSKVIVGGGPDEARLRRK FT FPAAHFAGPQADDRLVAYYNAADVFVFPSLTDTFGLVMLEAMACGTPVAAFRSEAPLAV FT VQQGATGFLDDDLAQACRAALALDRDEVRAHALTRTWDAVARDLLAAFTPLVEAPLALP FT PAAQRI" FT misc_feature 206722..207171 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 1.1e-13" FT CDS 207544..208962 FT /transl_table=11 FT /gene="acyH" FT /locus_tag="BPP0195" FT /product="adenosylhomocysteinase" FT /EC_number="3.3.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3068" FT /protein_id="CAE39936.1" FT /translation="MNAVTDKSVADYIVADMALAGWGRRELAIAETEMPGLMAIRDEYA FT ASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPV FT FAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQDISVLAKPGS FT EEERVLFAAIKETLARDPKWYSTRLAQIKGVTEETTTGVHRLYQMSQKGELAFAAINVN FT DSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKIAVVAGYGDVGKGCAQALAALRAQVW FT VTEIDPICALQAAMEGFKVVTMEEAAAHADIFVTATGNYHVITRQHMEAMKDQAIVCNI FT GHFDNEIDVAGLENCQWEEIKPQVDHVIFPDGKRIILLAKGRLVNLGCATGHPSFVMSS FT SFANQTIAQIELFTRNEAYTTGQVYVLPKHLDEKVARLHLKKLGAKLSTLSKQQADYIG FT VPVEGPFKPGHYRY" FT misc_feature 207571..208956 FT /note="HMMPfam hit to PF00670, S-adenosyl-L-homocysteine FT hydrolase, score 0" FT misc_feature 207790..207834 FT /note="PS00738 S-adenosyl-L-homocysteine hydrolase FT signature 1." FT misc_feature 208303..208353 FT /note="PS00739 S-adenosyl-L-homocysteine hydrolase FT signature 2." FT CDS 209033..209368 FT /transl_table=11 FT /locus_tag="BPP0196" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3067" FT /protein_id="CAE39937.1" FT /translation="MALILVWILNAVALLAVAYLLPGITVASFGSALVAALVLGLLNML FT VKPVLVLLTLPITIVTLGLFLIILNALLFWFAGSVLRGFQVNGFWWAVAGAILYSIIAG FT LLTKLIP" FT misc_feature 209033..209137 FT /note="Signal peptide predicted for BPP0196 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.984) with cleavage site FT probability 0.467 between residues 35 and 36" FT misc_feature join(209042..209110,209129..209197,209207..209275, FT 209294..209362) FT /note="4 probable transmembrane helices predicted for FT BPP0196 by TMHMM2.0 at aa 4-26, 33-55, 59-81 and 88-110" FT CDS 209368..210210 FT /transl_table=11 FT /locus_tag="BPP0197" FT /product="putative methylenetetrahydrofolate reductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3066" FT /protein_id="CAE39938.1" FT /translation="MTQSTAPAFSLEFFPPRDIAAQERLVRAAKQMLAIQPRYVSVTFG FT AGGSTRAGTADTVRTLRNLGCDAAPHLSCIGATRDQLRDILAAYREQGVRRLVALRGDL FT PSGMGGDAGELRYASDLVAFIRQETGDWFHIEVAAYPEMHPQAESPSADLAHFVNKVQA FT GADAAITQYFFNPDAYFDFVERAQAKGVAIPIVPGIMPITNHTQLVRFSEMCGAEIPRW FT IRLRLAEYGDDKASIRAFGLDVVSELCQTLLENGAPGVHFYTLNHAEATLGIWKALNA" FT misc_feature 209368..210204 FT /note="HMMPfam hit to PF02219, Methylenetetrahydrofolate FT reductase, score 1.4e-95" FT CDS complement(210274..211245) FT /transl_table=11 FT /locus_tag="BPP0198" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3064" FT /protein_id="CAE39939.1" FT /translation="MSASPAPKKSAAALAPERLDWNLLRTFMFVVQERGVGRAATALHL FT SQPAVSQALKRLEQAVGGVLLYRRSGEFRLTNLGEEIYRLAREMYGMVARVEEAATQDE FT DDIAGTLRLLVMSKIQSTAYDDFLAHFHRRYPKVEFYVDVMQSAAILDALAKRVPALGL FT CLCRKAIDTLERRLFLRHRYVVVCGRHHPFFSRRNVRVEDLMDQNFVCFASDQLGDTLS FT PLTIFRDQQGFTGRIVGTSPYLEEIRRMVVAGVGLSFLPEHLIRQDVLAGELRRLPPEH FT NVAEIEVFLAWHRQRKLSAAEQAFLAAFERFLHRTPLEMRAC" FT misc_feature complement(210304..210936) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2e-30" FT misc_feature complement(211006..211185) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3e-19" FT misc_feature complement(211051..211143) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS complement(211309..212328) FT /transl_table=11 FT /locus_tag="BPP0199" FT /product="putative aminohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3063" FT /protein_id="CAE39940.1" FT /translation="MKAFYHPDQKLHHPQTYFSRGKMRTPQEVPARLDALAEAARKLKF FT DVREPADAGAGAIGAVHSLDYLRFLREAHARWKQLPDDWGDEVVSNVFVREPNALRGVL FT AQAARYLADGSCPVGPHTWQSAYWAAQCAISGAQTLLDGERHAYALCRPPGHHARRDAA FT GGFCYLNNAAIAAQMLTQRYKRVAILDTDMHHGQGIQEIFYERSDVLYVSIHGDPENFY FT PVVAGFENERGAGEGYGYNVNLPMPHGSPEPVFFDRLQQAQRAIELFQPDALVLSLGFD FT MFEKDPQAMVAVSANGFERLGQAIGAFKLPTLIVQEGGYYIEGLEDNAERFFAGLAKA" FT misc_feature complement(211315..212253) FT /note="HMMPfam hit to PF00850, Histone deacetylase family, FT score 2.3e-54" FT CDS complement(212330..213703) FT /transl_table=11 FT /locus_tag="BPP0200" FT /product="putative integral membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3062" FT /protein_id="CAE39941.1" FT /translation="MPAIRQSYERNMQGNHQTATHQPVRASIAAFVGTMIEWYDFYIYA FT TAAALVFGKLFFPSVDGFYGTLAAFGTFAVGFLARPLGGAVFGHIGDRIGRKKSLVITL FT LLMGTVTVLIGLLPTYASIGIWAPILLVALRFIQGIAVGGEWGGAVLMAGEHSPDRSKR FT TFFASFAQLGSPAGLILSMLMFKLVTSLDDAAFMDWGWRVPFLFSAALLVVGFAIRLSV FT NESPDFLAEQAEKARLKDAAAKQAADKAPIVEVLRGASGLLALAVGANVLGIAGFYFTN FT TFMLAYTTQYVGLSRGVILDCLLVVSVMQFIITPLSAYIATRIGSRRFLLITSFLSIFT FT PYVMFNMVDQGTLTSLTLGVGLAVVCLGAYYAVIAGYVSDSFPTRIRYTGISMAYQLSG FT AIFGGLTPILGTILAEKFQGHWWPLALLFSGISLLSMISVIFLANHRTDAVTAPLRSA" FT misc_feature complement(212351..213631) FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 3.7e-29" FT misc_feature complement(join(212369..212434,212465..212530, FT 212570..212635,212666..212716,212744..212809, FT 212855..212920,213038..213103,213149..213205, FT 213245..213310,213341..213406,213443..213508, FT 213554..213619)) FT /note="12 probable transmembrane helices predicted for FT BPP0200 by TMHMM2.0 at aa 28-50, 65-87, 99-121, 131-153, FT 166-185, 200-222, 261-283, 298-320, 329-346, 356-378, FT 391-413 and 423-445" FT CDS complement(213980..214660) FT /transl_table=11 FT /locus_tag="BPP0201" FT /product="5-formyltetrahydrofolate cyclo-ligase family FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3061" FT /protein_id="CAE39942.1" FT /translation="MHTQNTAKNTAAALRARLRQSRAELTSSQRSRGALLMRGRLFTWL FT NLACEQAAAQGRPLSRVAAFWPMEDEPDLLPLLEQWVESGIAVCLPAVQERDAPLVFRD FT WTPDSAMRTGAYGIQEPAAGPAVVPDVVLVPTLGYTLDAARLGYGGGYYDRTLAAWQAA FT DASPTTIGIAWSEGLLPDDYQAAAHDIALDAILTPDGWVPGAPLVASGAAAGHRSAGSR FT FLLR" FT misc_feature complement(214067..214636) FT /note="HMMPfam hit to PF01812, 5-formyltetrahydrofolate FT cyclo-ligase family, score 1.6e-26" FT CDS 214673..216799 FT /transl_table=11 FT /locus_tag="BPP0202" FT /product="putative transglycosylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3060" FT /protein_id="CAE39943.1" FT /translation="MKRVLEARRYQKLALRDAADGMRGWLPVLALFTAACAPVDAQQRA FT AASTAPAAVSMQAAPDAEQARRPIAVPPAVLAGLPPAPQTPAQQAVVAAREASQRKQWS FT VLGALAPQARTDPLGMYPEYWLLRYQLWSPPGGRRPDAELQRFLAAHAGSYLEDRLRGD FT WIQAAARAGDFETVRRLGPVKQGNAQIACAGLDARHMTGQRASAAEAVAAFAPGTACWA FT LYDQLVADGVLGWDEIQPQLRDAIEAGKLSDARKLAQYIFEPKDQKSYDQMMKNPMKWL FT VRQDKSPVGRNEKELVTLALARLNKPDVSVADSYLRREWSRHLPRQNLAWVRSQYALVA FT VLNQDPRAYEWYREAGAVRMTEYSHAWKVRSALRQPRIDWKWVIEAIEGMPPSQQAEPV FT WVYWKARGQAALGRDQQASQAYASIADQFNFYGQLAAEELGRRITVPPAPAPVTDAEIA FT EARAHPGLRRAIYLFRLGWRAEAVPEWNFSLRGMSDRQLFAAAELARAEGIYDRVVNTS FT ERTAEQFDFSQRFIAPFEGRVSAKARAIDLDPAWVYGLIRQESRFIMDARSHAGASGLM FT QLMPATAKWVAGKIGMSDFRPGSVNDFDVNTELGTQYLNIVLQGLDGSQVLASAGYNAG FT PGRPRNWRASFGHPVEGAIFAETIPFNETRLYVKNVMSNAVYYAAMFSGQPQSLKERLG FT SIVPPQAALATNQR" FT misc_feature 216278..216637 FT /note="HMMPfam hit to PF01464, Transglycosylase SLT domain, FT score 1.3e-19" FT CDS 216796..217890 FT /transl_table=11 FT /gene="cca" FT /locus_tag="BPP0203" FT /product="tRNA nucleotidyltransferase" FT /EC_number="2.7.7.25" FT /note="ortholog of Bordetella pertussis (BX470248) BP3059" FT /protein_id="CAE39944.1" FT /translation="MSRTDDPGVAGLQVYIVGGAVRDGLLGLPAGDRDWVVVGATPEDM FT ARRGFIPVGGDFPVFLHPRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDL FT TVNAIARTPQGELVDPLDGVADVRARVLRHVGEAFAEDPVRILRLGRFAARFGDFSIAP FT ETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDD FT AAVRAEIDRAAAAGLPLAGRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALA FT ASASTAAQLDLIERCDALRKPERFDALLQAAAIVAPVDLSAWRARVQAVRAIDAGAIAR FT QCAGDPARIKPALRQARLQALGGA" FT misc_feature 217000..217470 FT /note="HMMPfam hit to PF01743, Poly A polymerase family, FT score 7.9e-34" FT CDS complement(217905..219164) FT /transl_table=11 FT /locus_tag="BPP0204" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3058" FT /protein_id="CAE39945.1" FT /translation="MRRGPARAAALHRAFSLHGKIAAMQRPASSSLPPLDPAASAHSAS FT VARHLRAAIAAAGGWLPFSQWMSAALYAPGLGYYTAGATKLASPADAQGPALPAGDFVT FT APELTPLFAATVARQIAQVLRATDTASVLEFGAGTGALAEGVLRALAGLDCPARYLIVE FT VSADLRQRQQSRLAPFGDRVQWLDQLPDAFAGCVLGNEVLDAMPATLFRWSETGVVQER FT GVTVDANGEFAWQDRDADAPLAQAVAQRMPPLPGYVSEINLQAEAWVRSMGLWLQRGAA FT LLLDYGFPRSEYYHPQRAGGTLMCHLRHHAHADPFAAPGLQDITSHVDFTAMADAALAG FT GLQVLGYLSQARFLVNAGLLDALSQLDPADARAYAQAVAPVQKLLSEAEMGELFKVLAV FT GRDMPEPLLGFARGDRRGTL" FT misc_feature complement(217962..218990) FT /note="HMMPfam hit to PF02636, Uncharacterized ACR, FT COG1565, score 7.7e-33" FT CDS complement(219184..220932) FT /transl_table=11 FT /locus_tag="BPP0205" FT /product="putative ATP-dependent RNA helicase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3057" FT /protein_id="CAE39946.1" FT /translation="MIRSARCSINRCPDRHLFPCSAWRMHMRRYMRQGKAMSFEDLGLA FT PTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNRIAHQPG FT NKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLKALSRRVDV FT LVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKERQTLLFS FT ATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADDAAHKMRLLDHVLRDARL FT DQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRVLVATDV FT AARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVRRIEHY FT IGQSINAEVIAGLEPQRTPRPNTGGPRRGGKPMGGKRPGGYGAPREFGDRPQRPYGDRP FT QRDFGDRPQRDASDRPQRSFGDRPQRPYGDRPQRDFGDRPQRPYGDRPQRDFGDRPQRS FT FGDRPQRDIGDRPQRDFGDRPQRSFGDRPQREGGWHGAPREGRSFDKRPGGPAKRFAKP FT AAPRRG" FT misc_feature complement(219805..220020) FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain, score 1.8e-30" FT misc_feature complement(220159..220785) FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase, FT score 1.2e-76" FT misc_feature complement(220342..220368) FT /note="PS00039 DEAD-box subfamily ATP-dependent helicases FT signature." FT CDS complement(221099..221851) FT /transl_table=11 FT /gene="ung" FT /locus_tag="BPP0206" FT /product="uracil-DNA glycosylase" FT /EC_number="3.2.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3056" FT /protein_id="CAE39947.1" FT /translation="MPNDNRLAPAALAAQAAALPAAWRHVLEQPAVARAFASVLGHVEQ FT RLAEGAVVYPATPFRALDQLAPADVRVVILGQDPYHGPGQAQGLAFSVPDDCKCPPSLR FT NIFNEIAVDYPRPTRHDLSAWTRQGVLLLNTSLTVEDGQPGSHAKRGWETVTDALIAEV FT ARDPSPKVFLLWGAHAQAKQALVPADAGHLVLAANHPSPLSARRPPVPFVGCGHFRQTN FT AWLQQRGQKPVDWSGEQNNASRQGEFAL" FT misc_feature complement(221174..221665) FT /note="HMMPfam hit to PF03167, Uracil DNA glycosylase FT superfamily, score 8.6e-60" FT misc_feature complement(221612..221641) FT /note="PS00130 Uracil-DNA glycosylase signature." FT misc_feature complement(221798..221851) FT /note="Signal peptide predicted for BPP0206 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.948) with cleavage site FT probability 0.451 between residues 18 and 19" FT CDS complement(221888..222616) FT /transl_table=11 FT /locus_tag="BPP0207" FT /product="haloacid dehalogenase-like hydrolase" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein RSC0271 SWALL:Q8Y2R4 (EMBL:AL646058) (229 aa) fasta FT scores: E(): 2.3e-35, 52.7% id in 222 aa, and to FT Streptomyces coelicolor putative hydrolase SCE68.31c FT SWALL:Q9WX01 (EMBL:AL079345) (215 aa) fasta scores: E(): FT 4.6e-21, 40% id in 220 aa" FT /protein_id="CAE39948.1" FT /translation="MDALPTLPPTAAMTDFPFDAVLFDCDGVLVDSEPITNRVLCQMLG FT ELGWELSPEETMRIFTGKAVRDELPLIEARTGTRLTDEWFREFRQRRNDALDRELVEIP FT GAPQAVRALHAALDGRVAVASGADRLKVEMQLAKVGLADCFTGRVFSGQELPRSKPFPD FT VYLTAAQALDVAPSRCAIVEDSVIGATAGVAAGATVFGYSPPGQAGHSDAQALLATGVA FT HVLTDMAELPSVLAAWRAAG" FT misc_feature complement(222002..222565) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase, score 8.9e-24" FT CDS complement(222669..223406) FT /transl_table=11 FT /locus_tag="BPP0208" FT /product="phosphorylase family protein" FT /note="Similar to Escherichia coli MTA/SAH nucleosidase FT [includes: 5'-methylthioadenosine nucleosidase; FT S-adenosylhomocysteine nucleosidase] Mtn or Pfs FT SWALL:MTN_ECOLI (SWALL:P24247) (232 aa) fasta scores: E(): FT 2.8e-07, 33.48% id in 221 aa, and to Bacillus halodurans FT 5'-methylthioadenosine/S-adenosylhomocysteine nuclosidase FT BH3238 SWALL:Q9K7X0 (EMBL:AP001518) (233 aa) fasta scores: FT E(): 1.3e-21, 38.23% id in 238 aa" FT /protein_id="CAE39949.1" FT /translation="MLGILAALTDEIRALLDEMGPGAVTRRIGMRDYHVGELRGQPCVL FT VLTRVGKVTAAATTATLLREFPVDAVVFTGLAGGLHDSVRVGDIVIGTALIQHDLDARP FT LFPQYEVPLLERSHFATDAGLTERLHRCATGFLAGHAAGRAVPPSVHRGLIATGDCFVN FT RADTLRGLKAALPDALCVEMEGAAVAQVCHEFGVPCAVMRTVSDRADGSAMVDFQGFLR FT EVASVYSAGVLRGFLDMPRGARD" FT misc_feature complement(222696..223406) FT /note="HMMPfam hit to PF01048, Phosphorylase family, score FT 1.1e-32" FT CDS 223565..224380 FT /transl_table=11 FT /locus_tag="BPP0209" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA1350 SWALL:Q9I3Z4 (EMBL:AE004564) (249 aa) fasta FT scores: E(): 1e-55, 59.59% id in 245 aa, and to Ralstonia FT solanacearum hypothetical protein RSC1113 SWALL:Q8Y0D1 FT (EMBL:AL646062) (244 aa) fasta scores: E(): 1.5e-55, 57.37% FT id in 244 aa" FT /protein_id="CAE39950.1" FT /translation="MQTSMEGHEVVSRQAWLERRRALLEREKAQTRLRDELAAQRRALP FT WVRVDKPYAFETARGRRTLADLFDGRSQLIVKHFMLGPGWGEGCVGCSFEVDHVEGALL FT HLRHHDVGYVAVSRAPLAEIEAFKRRMGWGFEWVSSYGDDFNFDYHVSFTPQDMARGRG FT QYNYAETELPIDELSGLSVFYRDAVGEVFHTYSAYGRGAEEVLGAYMLLDLTPKGRNET FT GPRHDLTDWVRHHDRYGAAGQVAATGRYEASGGQAPPDAAPGCCGAPHT" FT CDS complement(224386..225165) FT /transl_table=11 FT /locus_tag="BPP0210" FT /product="AraC family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator PA2488 SWALL:Q9I0Z4 FT (EMBL:AE004676) (254 aa) fasta scores: E(): 1e-25, 38.09% FT id in 252 aa, and to Rhizobium meliloti putative FT transcription regulator protein SMC00994 SWALL:Q92RK7 FT (EMBL:AL591785) (260 aa) fasta scores: E(): 1.2e-22, 35.06% FT id in 231 aa" FT /protein_id="CAE39951.1" FT /translation="MLEQGPPTVNPAHLLTAFSIERARQARGISVPAHSHAEGMLVLVQ FT TGLALVQGNTEMLTMAPGNIGWVPPGIMHEAHWFGHARGTFLYVRADACARLPGHTSAW FT PLRPLVDALIDRLAGPAGAALSPAYGERLFDILLTELGLCEQSAHTLPMPRERRLRELA FT VRLLASPDDGSSIEAWAERLNMSARTLMRRFRGETGITLGQWRQKVRLLRALELLAGGK FT PVTDVALAVGYDSPSAFIGSFRATYGVTPSQYFARNA" FT misc_feature complement(224398..224526) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 3.2e-09" FT misc_feature complement(224413..224538) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT misc_feature complement(224545..224679) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 3.9e-05" FT CDS 225277..225717 FT /transl_table=11 FT /gene="fur" FT /locus_tag="BPP0211" FT /product="ferric uptake regulation protein" FT /note="Similar to Bordetella pertussis ferric uptake FT regulation protein Fur SWALL:FUR_BORPE (SWALL:Q45765) (139 FT aa) fasta scores: E(): 2.8e-23, 50.76% id in 130 aa, and to FT Burkholderia cepacia ferric uptake regulator Fur FT SWALL:Q9AP02 (EMBL:AF317836) (142 aa) fasta scores: E(): FT 4.2e-21, 51.53% id in 130 aa" FT /protein_id="CAE39952.1" FT /translation="MVGKDLRSAGIKATLPRLQVLEVFNRHPDRHLSAAEVYRTLAAER FT TPLGLATVYRVLGQLAQAGVLSRLQLDPHGSLFELAGKGRHDHLVCTRCGRVVESADPA FT IARQAARVARRHGFVLETYNLGLYGRCRTCSALVSGPKGVFE" FT misc_feature 225298..225660 FT /note="HMMPfam hit to PF01475, Ferric uptake regulator FT family, score 1.6e-42" FT CDS 225714..226112 FT /transl_table=11 FT /locus_tag="BPP0212" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein RSC1812 SWALL:Q8XYE6 (EMBL:AL646066) (138 aa) fasta FT scores: E(): 1.8, 25.37% id in 134 aa, and to the FT C-terminal region of Pseudomonas aeruginosa hypothetical FT protein PA3720 SWALL:Q9HXS1 (EMBL:AE004791) (195 aa) fasta FT scores: E(): 1.6e-07, 33.08% id in 136 aa" FT /protein_id="CAE39953.1" FT /translation="MNQADFRYHDVTGFPLVVARHRAGEPGFAARWIAEMERLAGNAAQ FT FVMIVPDLDVEIAHDDRKAMVQWQTGNMARLRECCKGFIAVKPDPSGLARTQAQAEKMT FT RAFGLPFCAVATLAQAREKARQLLEPAG" FT CDS complement(226120..227316) FT /transl_table=11 FT /locus_tag="BPP0213" FT /product="putative Na+/H+ antiporter protein" FT /note="Similar to Escherichia coli Na+/H+ antiporter 1 NhaA FT or Ant SWALL:NHAA_ECOLI (SWALL:P13738) (388 aa) fasta FT scores: E(): 2.1e-68, 52.82% id in 390 aa, and to Rhizobium FT loti Na+/H+ antiporter MLR5309 SWALL:Q98C38 (EMBL:AP003006) FT (398 aa) fasta scores: E(): 3.7e-86, 61.05% id in 398 aa" FT /protein_id="CAE39954.1" FT /translation="MPTTPTRAPSLLQAFLRSEALGGYVLMIAAVLALIVANSPLAPAY FT FQLLGTKLGYASEAFTLKESVLHWINDGLMAVFFLLVGLEIKREMLDGQLRGVSRIVLP FT GVAAAGGMLMPALVYLLVNQGDPAGLRGWAIPAATDIAFALGILALLGSRVPTSLKIFL FT TALAILDDLGAIAIIAVFYTAELNTSALAAAGGLLAALCVLNRLRVLRLAPYLLVGALL FT WYFVLKSGVHATLAGVALALAIPLRRQDPRQPGAEHSPLHALEHALHRPVALLIVPVFG FT FANAGVSFDGMGIDSLTAPIPLGIALGLFLGKQLGVFGFAWLAIRTGLASMPRHASFAQ FT LYGVALLCGIGFTMSLFIGALAFDDAATIDATKIGVLTGSLVSAVLGYALLRVLPPAD" FT misc_feature complement(join(226129..226194,226234..226299, FT 226345..226410,226450..226515,226585..226650, FT 226687..226752,226765..226830,226852..226917, FT 226948..227013,227065..227121,227191..227256)) FT /note="11 probable transmembrane helices predicted for FT BPP0213 by TMHMM2.0 at aa 20-42, 65-84, 101-123, 133-155, FT 162-184, 188-210, 222-244, 267-289, 302-324, 339-361 and FT 374-396" FT CDS 227508..227858 FT /transl_table=11 FT /locus_tag="BPP0214" FT /product="hypothetical protein" FT /note="No significant database matches. Doubtful CDS" FT /protein_id="CAE39955.1" FT /translation="MAGTLAPIRALFFWPDGAAAPRLVDTGPHLRAPGRGGYQLRLLRP FT SLALRRLARGQARVSVWHGVLRIWQGDALRAAEPAHAGPRARALTAAELRYLAAWLHQQ FT GLHWNTLHDAAL" FT CDS 227842..228975 FT /transl_table=11 FT /locus_tag="BPP0215" FT /product="putative glycosyl transferase" FT /note="Similar to Xylella fastidiosa hypothetical protein FT XF1470 SWALL:Q9PDA9 (EMBL:AE003977) (376 aa) fasta scores: FT E(): 4.8e-20, 42.48% id in 379 aa, and to Streptomyces FT coelicolor putative glycosyl transferase SCH4.05c FT SWALL:Q9KYT4 (EMBL:AL355913) (391 aa) fasta scores: E(): FT 3.8e-14, 33.06% id in 372 aa" FT /protein_id="CAE39956.1" FT /translation="MTQRSEPAVPALRILHTEAATGAGGQETSIYREMLAMRARGHHLE FT AACQPGAPLARRLRAAGFPVHELAMDGVAAGVRAVWRLRELVRGRFDVVNTHSRRDTVL FT AAWAGRMAGAPLIVRTRHLAKPVGSLYTYTWLPHRVIAVSDHVRGQILRAGARAAHVEA FT IASPATLAPAPPASSLRAELGIAAAAQVIGCVAVMRADKGLDDLLDAFVALAGRHAAAH FT LVLVGEPGGIGALLRERAQRLGLGARVHLTGHRDDIPNVLAAFDVFALPTRSEALGLAM FT VEAAAAGLPVIAGNVGGVPEVVRHGATGLLVPPSDPAALAQALERLLVDPALRRAMGRA FT GSRMVRDERDFSPERQAARVEAAYCRWLAQRGRPAWR" FT misc_feature 228364..228873 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 8.5e-48" FT CDS complement(228985..229449) FT /transl_table=11 FT /locus_tag="BPP0216" FT /product="conserved hypothetical protein" FT /note="Poor database matches. Weakly similar to FT Halobacterium sp histidine triad protein VNG2186G FT SWALL:Q9HNA0 (EMBL:AE005106) (142 aa) fasta scores: E(): FT 0.33, 30.14% id in 136 aa" FT /protein_id="CAE39957.1" FT /translation="MSTRHPDCPLCQQDGGALLWRGSHLRVIEVDDPDYPGFTRVVWNA FT HIAEMTSLSTHGRELLMRAVWAVEQAQRDVLHPDKVNLAALGNVVPHLHWHVIPRWRDD FT RHFPDAIWAAPRVAPGAEPQAWRAARADTAALLPRYRNRVVEAMNALLWH" FT CDS complement(229446..229895) FT /transl_table=11 FT /locus_tag="BPP0217" FT /product="acetyltransferase (GNAT) family protein" FT /note="Similar to Pseudomonas aeruginosa probable FT acetyltransferase PA5432 SWALL:Q9HTD4 (EMBL:AE004956) (149 FT aa) fasta scores: E(): 2.4e-44, 67.34% id in 147 aa, and FT weakly similar to Enterobacter aerogenes aminoglycoside FT N(6')-acyltransferase AacA7 SWALL:AAC6_ENTAE (SWALL:P50858) FT (152 aa) fasta scores: E(): 0.023, 24.66% id in 150 aa" FT /protein_id="CAE39958.1" FT /translation="MTPTEIRPLSAADHEAWLPLWKGYQEFYKVQLADAATAQTWQRFL FT DPAEPMHAALAWRDGKAIGMVHWIFHRSCWTTGDYCYLQDLFVAPDVRSSGAGRALIEH FT VYADARAQGAARVYWLTHETNTDAMHLYDHIADRSGFLQYRKVLA" FT misc_feature complement(229482..229736) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 5.9e-15" FT CDS complement(229928..231451) FT /transl_table=11 FT /locus_tag="BPP0218" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA3455 SWALL:Q9HYF1 (EMBL:AE004766) (496 aa) fasta FT scores: E(): 6.7e-90, 49.38% id in 490 aa, and to FT Synechocystis sp hypothetical protein SLR1363 SWALL:P73537 FT (EMBL:D90907) (500 aa) fasta scores: E(): 2.1e-57, 34.83% FT id in 488 aa. Possible alternative translational start FT site" FT /protein_id="CAE39959.1" FT /translation="MRNGGISRTIGRSPSTHCAMFIEAEADPSLSKAQYKAREARLRTA FT LLKAQYERLQRAEQSLLIVVTGIDGAGKGDTINMLNEWMDPRHIHTMAFGLPDAEELAR FT PPMWRYWNELPAKGRTGIVFGSWYVPLLLEAVRKKPDTARLEAHAAQIRRFEAMLAAEG FT VQIVKLWYHLSAQAQAERTERLLANPETAWQVTPADRKVRKKYGRLRNAGQVAMAYTDA FT AHAPWRVIPSADDEMRAVRTAEAVLAAMRRRATPRSVRAFGAPSPAVHLVDRLGALDYD FT AKEDKDDYEAELGLLQGRLARAVRRDDFRERSLVLVFEGQDAAGKGGAIRRVTRALDAR FT QYDITPVAAPARHELARPYLWRFWRRIPRQGRIAIFDRSWYGRVLVERVENITAPTDWR FT RAYGEILDFERQLVGHGAIVLKFWLAITPAVQLERFREREKSPYKNFKITPDDWRNRKQ FT WQAYADAANEMLCRTDMREAPWHLVSSNDKRYARLQVLRHIVETLEDQL" FT CDS complement(231465..232334) FT /transl_table=11 FT /locus_tag="BPP0219" FT /product="metallo-beta-lactamase superfamily protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein RSC1544 SWALL:Q8XZ60 (EMBL:AL646065) (286 aa) fasta FT scores: E(): 5.6e-77, 67.24% id in 290 aa, and to FT Pseudomonas aeruginosa hypothetical protein PA2915 FT SWALL:Q9HZT2 (EMBL:AE004717) (288 aa) fasta scores: E(): FT 5.2e-70, 61.24% id in 289 aa" FT /protein_id="CAE39960.1" FT /translation="MSAHIQPFFDPATATFSYVLYEAPGGACAVIDPVLDFDPKSGRTT FT TASADRIADFVRQYALRTQWLLETHAHADHLSAAAYLQRQLGGVIGIGGHIRDVQVVFS FT KLYNLDGFACDGSQFGHLFEPDETFAIGALRVRALHVPGHTPADLAYLIDDGDSLSAFV FT GDTLFMPDVGTARCDFPGGDARTLYHSIRTLLALPPDTRLYMCHDYPPAGRAAAWQTTV FT AAQRAGNIHVRDGISESEFVAMRTARDATLDMPTLILPALQVNIRAGELPAPEANGTRY FT LRIPLDAL" FT misc_feature complement(231714..232307) FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily, score 1.2e-17" FT CDS 232438..232773 FT /transl_table=11 FT /locus_tag="BPP0220" FT /product="ArsR family regulatory protein" FT /note="Similar to Vibrio cholerae transcriptional activator FT HlyU SWALL:HLYU_VIBCH (SWALL:P52695) (108 aa) fasta scores: FT E(): 1.2e-10, 43.61% id in 94 aa, and to Ralstonia FT solanacearum probable transcription regulator protein FT RSC1543 SWALL:Q8XZ61 (EMBL:AL646065) (121 aa) fasta scores: FT E(): 1.2e-26, 72.54% id in 102 aa" FT /protein_id="CAE39961.1" FT /translation="MDDTLTDCEISALRASAAQACALLKALANEDRLLLLCQLVAAERN FT VGELETLTGIRQPTLSQQLGVLRDEGLVDTRRAGKYVYYQLASFEVGQVMKTLSSLYCG FT KASREQS" FT misc_feature 232507..232740 FT /note="HMMPfam hit to PF01022, Bacterial regulatory FT protein, arsR family, score 1e-17" FT CDS 232770..233201 FT /transl_table=11 FT /locus_tag="BPP0221" FT /product="putative membrane protein" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein RSC0438 SWALL:Q8Y298 (EMBL:AL646059) FT (144 aa) fasta scores: E(): 4.9e-25, 60.41% id in 144 aa, FT and to Rhizobium meliloti hypothetical protein SMA1053 FT SWALL:Q92ZC0 (EMBL:AE007247) (136 aa) fasta scores: E(): FT 1.8e-18, 54.41% id in 136 aa" FT /protein_id="CAE39962.1" FT /translation="MTIDWAAFTPWSSLGGGMLIGAAAAWLMLGAGRIAGISGILAGLL FT PPRAGAAWRMWFLAGLLAAPWLYRVFEPMPAVRIEAGALQLVLAGLLVGVGTRYGSGCT FT SGHGVCGLARGSRRSLVAVLAFMATGFATVFVLRHLMGA" FT misc_feature join(232812..232880,232917..232970,232998..233066, FT 233127..233195) FT /note="4 probable transmembrane helices predicted for FT BPP0221 by TMHMM2.0 at aa 15-37, 50-67, 77-99 and 120-142" FT CDS join(233203..233394,233396..233617) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0222" FT /product="putative membrane protein (Pseudogene)" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein RSC0437 SWALL:Q8Y299 (EMBL:AL646059) FT (137 aa) fasta scores: E(): 1.9e-26, 61.76% id in 136 aa, FT and to Vibrio cholerae hypothetical protein VCA0640 FT SWALL:Q9KLV1 (EMBL:AE004394) (154 aa) fasta scores: E(): FT 5.6e-20, 52% id in 125 aa. Contains a frameshift after FT codon 64" FT /db_xref="PSEUDO:CAE39963.1" FT misc_feature 233203..233271 FT /note="Signal peptide predicted for BPP0222 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.956) with cleavage site FT probability 0.882 between residues 23 and 24" FT misc_feature join(233311..233379,233449..233517,233530..233598) FT /note="4 probable transmembrane helices predicted for FT BPP0222 by TMHMM2.0 at aa 5-22, 37-59, 83-105 and 110-132" FT CDS complement(233633..234898) FT /transl_table=11 FT /locus_tag="BPP0223" FT /product="putative phenylacetate-CoA ligase" FT /note="Similar to Azoarcus evansii aerobic FT phenylacetate-CoA ligase PaaK or PacD SWALL:Q9L9C1 FT (EMBL:AF176259) (440 aa) fasta scores: E(): 8.5e-22, 29.73% FT id in 417 aa, and to Archaeoglobus fulgidus coenzyme F390 FT synthetase Af2013 SWALL:O28266 (EMBL:AE000964) (440 aa) FT fasta scores: E(): 9.3e-24, 30.04% id in 446 aa" FT /protein_id="CAE39964.1" FT /translation="MSEFFDVLETRQPAQRERDLMQALPAAIERAMARAPAIAGQLRGI FT DPRSVDNRAALAALPVLRKHELLERQQHSRDGAGPAGPAKAFGGFSTVGWGQALRVFAS FT PGPIYEPEGNRADYWRFARALYAAGFRAGELAYNCFSYHFTPAGSMMETAAHAVGCTVF FT PGGTGQTEQQVRAIHDLAPSGYTGTPSFLKLILEKADELGIRLDSLRRALVSGEAFPPS FT LRDWLAARGIEGYQAYGSADLGMIAFETPAREGLVVGEDIILEIVRPGTGEPVPDGEVG FT EVVVTTLNPDYPLVRFGTGDLSAIMPGQSPCGHTNIRIRGWLGRADQTTKVRGMFVHPS FT QVADVLRRHPEIVRARLVVSGATGADHMVLHVQARERSPELAGRIADSVREVTKLRADV FT QWADEGALPNDGKVIDDVRSYE" FT CDS complement(234967..235797) FT /transl_table=11 FT /locus_tag="BPP0224" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi high-affinity branched-chain amino acid transport FT ATP-binding protein LivF or LivG SWALL:LIVF_SALTY FT (SWALL:P30294) (237 aa) fasta scores: E(): 2.8e-26, 41.8% FT id in 244 aa, and to Rhizobium loti ABC transporter, FT ATP-binding protein MLR5224 SWALL:Q98CB2 (EMBL:AP003006) FT (268 aa) fasta scores: E(): 5.1e-45, 56.07% id in 255 aa" FT /protein_id="CAE39965.1" FT /translation="MTAANNAPADKVLLDVNGIEVIYNHVILVLKGVSLRVPEGRIVAL FT LGANGAGKTTTLRAVSNLLKGERGDVTKGYIQYRDERIERLSPAELVKRGVVQVMEGRH FT CFAHLTIEENLLTGAYTRKLGRGDIDAALERVYQYFPRLKQRRTSQAGYTSGGEQQMTA FT IGRALMASPTMILLDEPSMGLAPQIVEEIFEIVRDLNQRERVSFLLAEQNTNIALRYAD FT YGYILENGRVMMDGAAAELAQNEDVKEFYLGISSGERKSFREQKFYRRRKRWLA" FT misc_feature complement(235108..235680) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.6e-33" FT misc_feature complement(235636..235659) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(join(235859..236944,236944..237192)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0225" FT /product="putative exported protein (Pseudogene)" FT /note="Similar to Rhizobium loti hypothetical protein FT MLR5223 SWALL:Q98CB3 (EMBL:AP003006) (445 aa) fasta scores: FT E(): 1.3e-67, 43.77% id in 434 aa, and to Agrobacterium FT tumefaciens plasmid AT hypothetical protein AGR_PAT_777P FT SWALL:AAK90898 (EMBL:AE007920) (457 aa) fasta scores: E(): FT 2.3e-66, 43.37% id in 438 aa. Contains a frameshift after FT codon 83" FT /db_xref="PSEUDO:CAE39966.1" FT misc_feature complement(237103..237192) FT /note="Signal peptide predicted for BPP0225 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 30 and 31" FT CDS complement(237305..238369) FT /transl_table=11 FT /locus_tag="BPP0226" FT /product="putative branched-chain amino acid transport FT system permease" FT /note="Similar to Rhizobium loti ABC transporter, permease FT protein MLR5222 SWALL:Q98CB4 (EMBL:AP003006) (346 aa) fasta FT scores: E(): 2.1e-56, 50.62% id in 318 aa, and to FT Agrobacterium tumefaciens str. C58 ABC transporter, FT membrane spanning protein ATU5523 SWALL:AAL46209 FT (EMBL:AE008972) (364 aa) fasta scores: E(): 3.4e-55, 47.98% FT id in 323 aa" FT /protein_id="CAE39967.1" FT /translation="MFYRENGQFKTSYRADQQIFPIRQDRIFIALLMAVIFVVVPLTAS FT DYLLRAILIPFLLLALAAVGLNILVGYCGQISLGTGAFMAVGAYAAWNFGVRFPGMPLV FT AQILLGGCFATLVGVIFGIPSLRIRGLYLAVATLAAQFFVDWAFLRIPFFTNYSSSGSV FT SVPPMTFFGLPVQSALEKYLLVLGFVVVFTLLAKNLVRGAIGRQWMAIRDMDVAAAVIG FT IRPMYAKLSAFAVSSFIVGVAGALWGYVHLGSWEPLAFDLARSFQLLFMVIIGGLGSIL FT GSFFGAAFIVLVPVALTNVPHLLGLSLSVDTAAHIEHMVFGALIVFFLIAEPHGLARLW FT SIAKEKLRIWPFPH" FT misc_feature complement(join(237344..237409,237494..237559, FT 237605..237670,237758..237823,237923..237979, FT 238001..238066,238082..238138,238160..238225, FT 238238..238288)) FT /note="9 probable transmembrane helices predicted for FT BPP0226 by TMHMM2.0 at aa 27-44, 48-70, 77-96, 101-123, FT 130-149, 182-204, 233-255, 270-292 and 320-342" FT misc_feature complement(237347..238240) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 1.4e-07" FT CDS complement(238380..239309) FT /transl_table=11 FT /locus_tag="BPP0227" FT /product="putative branched-chain amino acid transport FT system permease" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi high-affinity branched-chain amino acid transport FT system permease protein LivH or LivA SWALL:LIVH_SALTY FT (SWALL:P30295) (308 aa) fasta scores: E(): 3.5e-19, 27.18% FT id in 320 aa, and to Rhizobium loti ABC transporter, FT permease protein MLR5220 SWALL:Q98CB5 (EMBL:AP003006) (299 FT aa) fasta scores: E(): 3.5e-40, 50.81% id in 307 aa" FT /protein_id="CAE39968.1" FT /translation="MGFFLETLFGGLMSGMLYALIGLGFVLIFKASGVFNFAQGAMVLV FT AALSMARFSEWIPQWLGFENMLLANVLAFIVSALVMFVLAVAVERFVLRHLVNQEATTL FT LMATLGISYFLDGLGQIAFGSSVYSINVGMPKDPAIILETMFEGGLLINLEGLTAAVVA FT ALLVAALALFFQYTSTGRALRAVADDHQAAQSIGIPLNRIWVIVWSVAGLVALVAGIIW FT GSKFGVQFTLSTAALRALPVVILGGLTSVPGAILGGLIIGVGEKMSEVYLGSLVGGGIE FT IWFAYVLALVFLLFRPQGLFGEKIIDRV" FT misc_feature complement(238395..239300) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 1.2e-10" FT misc_feature complement(join(238431..238496,238518..238583, FT 238644..238709,238788..238853,238941..239006, FT 239046..239111,239157..239207,239223..239279)) FT /note="8 probable transmembrane helices predicted for FT BPP0227 by TMHMM2.0 at aa 10-29, 34-51, 66-88, 101-123, FT 152-174, 200-222, 242-264 and 271-293" FT CDS complement(239320..240117) FT /transl_table=11 FT /locus_tag="BPP0228" FT /product="putative high-affinity branched-chain amino acid FT transport ATP-binding protein" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi high-affinity branched-chain amino acid transport FT ATP-binding protein LivG or LivF SWALL:LIVG_SALTY FT (SWALL:P30293) (255 aa) fasta scores: E(): 2.7e-29, 38.58% FT id in 254 aa, and to Rhizobium loti ABC transporter, FT ATP-binding protein MLR5219 SWALL:Q98CB6 (EMBL:AP003006) FT (272 aa) fasta scores: E(): 3.8e-43, 55.37% id in 251 aa" FT /protein_id="CAE39969.1" FT /translation="MSNQTRAQRIGDVMLDMQNISLSFGGVKALTDISFNVREHEIRAI FT IGPNGAGKSSMLNVINGVYTPQNGAIMLRGEHFSRMSPRRAAEMGIARTFQNLALFKGM FT SVLDNIMTGRNLRMKSGLLAQALRLGPAEREEIAHREYVENIIDFLEIQAYRKVPVGRL FT PYGLQKRVDLGRALAMEPRLLLLDEPMAGMNIEEKQDMSRFILDVNDEFGTTIVLIEHD FT MGVVMDISDRVVVLDYGKKIGDGSPDEVRSNEDVIRAYLGVAH" FT misc_feature complement(239401..240000) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.2e-45" FT misc_feature complement(239956..239979) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(240121..242097) FT /transl_table=11 FT /locus_tag="BPP0229" FT /product="putative AMP-binding enzyme" FT /note="Similar to Aeropyrum pernix hypothetical FT long-chain-fatty-acid--CoA ligase APE1307 SWALL:Q9YCF0 FT (EMBL:AP000061) (651 aa) fasta scores: E(): 1.4e-81, 37.95% FT id in 635 aa, and weakly similar to Homo sapiens very FT long-chain acyl-CoA synthetase BG1 SWALL:Q9HC26 FT (EMBL:AF179481) (724 aa) fasta scores: E(): 1.9e-28, 25.03% FT id in 639 aa" FT /protein_id="CAE39970.1" FT /translation="MAQSLPASATVPAAAQTFPALLLEHASVRGSRPAIREKDLGIWQT FT LTWSEVAASVRLTAHGLAALGIGPGMHVAVIGENRPRLYIAMMATQALGAIPVPLYQDA FT VAQEMVYVLQDAEVSVVVVEDQEQADKMLEVREQCPALAHVVYDDPRGMRHYSDPLLRS FT FEQLEDTGRAHAASHPGFFEQAVAAVRPHDAGAMFYTSGTTGKPKGVVLTHHALIDRAR FT AVAEMENLTDQEDVLAYLPPAWIGQNMFSYTQLLVSGFTVNHPESPETVSIDMRDIGPT FT YYFAPPRVLEGLLTHVMIRMEDAGYIKRKLFHACMNLARRVGTRILDGQPVGLWDRLRY FT RLGDALIYGPLRNALGMSRVRVAYTAGEAIGPDLFVFYRSIGINLKQLYGSTETSVFVC FT VQPDGHVRDDTVGPPVEGVDIRVADNGEILVKSPGLFKEYYRNPEATAEARDDDGWFHT FT GDAGYLDSDGQLKIIDRAKDVGKLADGSLFAPKYIENKLKFFPYIKEAVAFGNGRDDVC FT AFINIDLEAVGNWAERRGLPYAGYTDLAGKDEVYALLQDCVEKVNADLAGDARLAASQV FT GRFLILRKELDPDDDELTRTRKVRRAFIGQKYGVLVDALYGGKDTQFIETEVKFEDGRV FT GRISADLKIRAARTFPAITAKAA" FT misc_feature complement(240574..241959) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 6.3e-81" FT misc_feature complement(241474..241509) FT /note="PS00455 Putative AMP-binding domain signature." FT misc_feature complement(242053..242097) FT /note="Signal peptide predicted for BPP0229 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.809) with cleavage site FT probability 0.746 between residues 15 and 16" FT CDS 242264..242974 FT /transl_table=11 FT /locus_tag="BPP0230" FT /product="cyclic nucleotide-binding protein" FT /note="Weakly similar to Escherichia coli catabolite gene FT activator Crp or Cap or Csm SWALL:CRP_ECOLI (SWALL:P03020) FT (210 aa) fasta scores: E(): 0.00055, 24.59% id in 187 aa, FT and to Pseudomonas aeruginosa probable transcriptional FT regulator PA0275 SWALL:Q9I6L5 (EMBL:AE004465) (228 aa) FT fasta scores: E(): 5.9e-09, 29.57% id in 213 aa" FT /protein_id="CAE39971.1" FT /translation="MQLADSLYLAAAWFRVLDAAQKLRVERDIAVQQVQAGTIIERKGE FT LAQVWIGVLSGLVKVSVGNAEGKVASLTGVPAGGWIGEGSLLKREVRKYDVVALRDSVV FT ARLPAGTFDWLLDTSIPFNRYLLHQLNERVAQFIGKAEYDRLLDPDARVARCLAELFNL FT LLYPGMGMRLTITQEEVGYLARVSRQRANQALRKLEEAGLLQVEYGAVRVLDLDGLKGY FT GADTDTAGALDDAG" FT misc_feature 242345..242626 FT /note="HMMPfam hit to PF00027, Cyclic nucleotide-binding FT domain, score 5.6e-10" FT CDS complement(242981..243616) FT /transl_table=11 FT /locus_tag="BPP0231" FT /product="probable transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0564" FT /protein_id="CAE39972.1" FT /translation="MFTLSVPAYVTAWASGAATGLGLFAVVGAQSAFILRQGLMRAHLL FT SILAVCALIDAVFIFGSVWGLQTLTGWFPWLTQAILWFGVAFLAWYALQSARRALRSDG FT GLEVARQAIPSRGAALLGAIGFSLLNPHFWLDMMVVGSLAHGFADARLAFAAGALTASV FT VWLAVLGVGSRLFAPLFSSPRAWRVLDGLIAAVMALLAARLALGGLAG" FT misc_feature complement(join(242996..243061,243101..243166, FT 243212..243277,243338..243403,243419..243484, FT 243521..243586)) FT /note="6 probable transmembrane helices predicted for FT BPP0231 by TMHMM2.0 at aa 10-32, 44-66, 71-93, 113-135, FT 150-172 and 185-207" FT misc_feature complement(243077..243397) FT /note="HMMPfam hit to PF01810, LysE type translocator, FT score 8.1e-18" FT misc_feature complement(243530..243616) FT /note="Signal peptide predicted for BPP0231 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.835) with cleavage site FT probability 0.262 between residues 29 and 30" FT CDS 243746..244645 FT /transl_table=11 FT /locus_tag="BPP0232" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0563" FT /protein_id="CAE39973.1" FT /translation="MKLDHGNLRALAAVVREGSFERAAAALSVTPSAVSQRVKALEDRM FT GRLLVQRTVPARATDDGQVLVQLAEQAALLEHDALNRLGVAEDEVPHASIPVAVNHDSL FT ETWFVDAAVRFAARSRATLDLQSEDQDHTAALLRKGAVLGAVTTLADPVQGCRIHALGS FT MRYVACCTPTFHQRYFAQGVSARTLASAPVLVFNRKDALQARYAHRIIGRAAWEPPVWW FT LPSSRAFVQATLGGLGWTMNPLPLVQAELDAGQLVPLRARAWEDVPLYWQHWRVNSQAM FT EALTDAVLAAARALVRRR" FT misc_feature 243752..243934 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.1e-13" FT misc_feature 243800..243892 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 244007..244624 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 0.00064" FT CDS 244741..245232 FT /transl_table=11 FT /locus_tag="BPP0233" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0562" FT /protein_id="CAE39974.1" FT /translation="MNIRKWGVGAVLGLSVATTAWAADFKVGQVEVDDLWVRASAPGQA FT NGAGYMEIENDAKAADRLVSVSSPAAERVELHNVVTENGVAQMRQVDGVAVPADGKARL FT APGGYHVMFLKLKAPFAEGGEVPATLKFEQAGEVAVKFKVKPLGHNPGMAGHDHGHMKH FT " FT misc_feature 244741..244806 FT /note="Signal peptide predicted for BPP0233 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT CDS complement(245279..246244) FT /transl_table=11 FT /locus_tag="BPP0234" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0561" FT /protein_id="CAE39975.1" FT /translation="MHKHAKRLLALAALTFAAGAAAQNWPSQPLRWIVPYPAGGGTDVV FT ARTVAGSLEKPLGQTIVVENRPGAATIIGATAIAQADPAGYVVGTADSGTLAFNPSLYA FT KLSYDPAKFTYIGGIARFPLMLAVNVNSPYKSVEDVLQAARKEPAKLTAASAGAGSPHH FT LALELFKQRANVDVLHVPYKGAAPAIQDLLGGQVDMMFIDLAAGLPNIKAGKLRVLGTA FT TPERLAVLPDAPTMAEQGVADFTAYAWQGLVGPAGMPEAAVKKLGGELEQSLKSPAVSQ FT KLLDMGVMPMPMTPQDFKAYAEKERAAWADVIKKANIRLE" FT misc_feature complement(245291..246112) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.5e-92" FT misc_feature complement(246179..246244) FT /note="Signal peptide predicted for BPP0234 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.898 between residues 22 and 23" FT CDS complement(246402..247172) FT /transl_table=11 FT /locus_tag="BPP0235" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0560" FT /protein_id="CAE39976.1" FT /translation="MGAMGDMAAQRRGAYERYRMTEVDSMPHRLAAIQARIKAACERSA FT RPPESVALLPVSKTFPVEAIRHAAALGLRRFGENKTQEIRHKAPELADLDLQWVMIGHL FT QTNKAKDVARDVAEVQSLDRLELADALQRRLEMEARSLDVLVQVKTSPELSKYGLAPEL FT LPGFLRTLVSDFPALRVQGLMTMAVNDEDPQAVRACFRLLRELRDRARDSVPGVALDRL FT SMGMSGDFEIAIEEGSTEIRIGSALFGARPASAP" FT misc_feature complement(246417..247091) FT /note="HMMPfam hit to PF01168, Uncharacterized protein FT family UPF0001, score 4.9e-58" FT CDS 247357..248598 FT /transl_table=11 FT /locus_tag="BPP0236" FT /product="probable aminotransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0559" FT /protein_id="CAE39977.1" FT /translation="MPLAAPDYAFAAPFQHPPASPIRSLMPYAMRPGTISLAGGYPAQE FT LFDVEGLAAASRQVLERLGACLQYSNIDGQASLRHELARLSAARGLHCDADTELAITGG FT SQQALALLARVMLQPGDAAVIETPAFPNSVQALRYTGAAVHTVPSGPSGIDLDALDALA FT ARVRPKMVCVVASFSNPCGATISRERRLRLLELAVRHRFLIVEDDPYGELRFAGETVPP FT IAALAEGQARHWAVYISSMSKTMAPALRIGWVVAPAEVRRRVVGAKAADDMACSAWTQE FT MVAQYLADGRYAQHVPRIRAAYGARCDAMAAALERELGERVVFRKPEGGMFFWARLNGA FT IDATRLLPYAIEHEVVYVPGKAFYADPAQADVNALRMSFATMNEAQIAQGIVRLGRALQ FT ACEANAPVSISLAA" FT misc_feature 247603..248550 FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II, score 7.2e-08" FT CDS 248712..249728 FT /transl_table=11 FT /locus_tag="BPP0237" FT /product="amino acid-binding periplasmic protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0558" FT /protein_id="CAE39978.1" FT /translation="MKIAQGLAAAALLAGMVAGAQGATLDVVKKRGTVVCGTTTGFAGF FT SAPDKQGTWRGLDVDLCRAVAAAVFGDASKIKVVPLNSQQRFTALQSGEVDVLTRNTTV FT TQQRDTALGIIHAGINFYDGQGFMVPKSLGVKSAKELNGATICLQTGTSNENTLADWAR FT ANQVSYKPVVIETFNEVVNAFASGRCDVFSTDASGLASIRISRLEKPDDYVVLPEIISK FT EPLGPFVRQGDDAWLNIVRWSLSAMIEAEEYGVTTANVDEQLKSENPNVRRILGVTPGA FT GANLGLDEKWAYNIIKQVGNYGESFERNVGQGSPLKIQRGLNAQWIQGGLMYALPIR" FT misc_feature 248712..248777 FT /note="Signal peptide predicted for BPP0237 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.790 between residues 22 and 23" FT misc_feature 248811..249500 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 1.9e-33" FT misc_feature 248877..248918 FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT misc_feature 249225..249254 FT /note="PS00659 Glycosyl hydrolases family 5 signature." FT CDS complement(249763..250239) FT /transl_table=11 FT /locus_tag="BPP0238" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0557" FT /protein_id="CAE39979.1" FT /translation="MNNLFAAPTPEEHAALLQEIGPLPLSGQAWPDWVRILAWIVLAVI FT GVQIVTTAIGLPPGQVNPVLAGTIILCFLGLALVSWHMQISVTRIDESGLRQTWITRRE FT VAWQDIQFAKFVPLLFSKRLVVFTRHGRPIVFQGGTRDLQVAFAKISLLYRRKR" FT misc_feature complement(join(249997..250062,250075..250140)) FT /note="2 probable transmembrane helices predicted for FT BPP0238 by TMHMM2.0 at aa 73-95 and 99-121" FT CDS complement(250382..251290) FT /transl_table=11 FT /gene="hmgcL" FT /locus_tag="BPP0239" FT /product="hydroxymethylglutaryl-CoA lyase" FT /EC_number="4.1.3.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0556" FT /protein_id="CAE39980.1" FT /translation="MSQPSRVKIVEVSPRDGLQNEKEFIATDIKVELVDRLSAAGFQNV FT EAASFVSPKWVPQMADGAEVMARIARRPGTIYSVLTPNMKGLEGALAARADEIVIFGAA FT SEAFSQKNINCSIAESIARFEPVAAAARQAGVRVRGSISCALGCPYQGEVPIEAVVDVA FT RRFLALGCDEIDVADTIGVGTPRRVREVMDAVTRVVDPARVSGHFHDTYGQALANILAA FT LETGIAIFHASASGLGGCPYAKGATGNVATEDVLYMLRGLDIETGIDFDAVVDIGQWIS FT GHLQRKGSSRAGNAVAAKRAA" FT misc_feature complement(250427..251254) FT /note="HMMPfam hit to PF00682, HMGL-like, score 7.6e-75" FT CDS complement(251404..252516) FT /transl_table=11 FT /gene="smf" FT /locus_tag="BPP0240" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0555" FT /protein_id="CAE39981.1" FT /translation="MPLTHTRAELSAWLRLSQEPGVGPAAAYALLAALGMPEQIYAQGS FT ATLARHVPQDVARQLRAPLSDEAAALIEQTLQWAEQPGHHILTLADPAYPQQLLTIADP FT PILLYVNGDPACLRRPAMAVVGARNATPGGQDNARAFARHLAGQGWCIVSGLALGIDAA FT AHEGALLAGAQGAGTVAVMGTGIDRIYPAAHRDLAHRIVQHGALVSELPLGTGAQRHHF FT PRRNRLVAGLARGVLVVEAARQSGSLITARLAGENGREVFAIPGSIHSPLSRGCHALIR FT QGAKLVETAQDIADELGGAGPAASARTAPPDRPAPPHPLLDALGFDPLHLDALQARTGM FT DAASLNAQLLELELDGRVARVEGGRFQRLR" FT misc_feature complement(251653..252285) FT /note="HMMPfam hit to PF02481, SMF family, score 5.8e-96" FT CDS complement(252617..253180) FT /transl_table=11 FT /gene="lrp" FT /gene_synonym="alsB" FT /gene_synonym="livR" FT /gene_synonym="ihb" FT /gene_synonym="oppI" FT /locus_tag="BPP0241" FT /product="leucine-responsive regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0554" FT /protein_id="CAE39982.1" FT /translation="MQNHHDSEADLHEYANQFEQHEIKLPMQLDAIDRRILDILQTEGR FT LSNQDLADRVALSPSACLRRVRALEDGGVIQGYRAVLDPRCLGLDFEAIVHVSLDQSQA FT GWHEAFVARLAGLQEVRQASIVTGSSNYVLQVRTRDLAAFSAFVVDKLNGIAGVREIHS FT HIVMRKVKDCGGVLPVDPAGLAGP" FT misc_feature complement(252713..253024) FT /note="HMMPfam hit to PF01037, AsnC family, score 5.1e-30" FT misc_feature complement(252962..253042) FT /note="PS00519 Bacterial regulatory proteins, asnC family FT signature." FT CDS 253239..254489 FT /transl_table=11 FT /locus_tag="BPP0242" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0553" FT /protein_id="CAE39983.1" FT /translation="MTTRQACLEADRRDPLAAFKDEFELPAGLIYLDGNSLGALPRGAA FT ARAAQVIGQEWGQGLIRSWNTAGWFELPARLGNKLAGLIGAGQDEVVMTDSTSLNIFKA FT LAAALRLAQRAAPQRKVIVSERDNFPTDLYMIQGMIDLLRQGYELRLVDAGLSLEQALD FT DDVAVVLLSHVNYRTGAMHDMAAVSRQAHARGALIIWDLAHAAGAVPVALDADGADFAV FT GCTYKYLNGGPGSPAFIWVAPRHRDDFWQPLSGWWGHRQPFEMADTYVPAQGIRRYLCG FT TQPIVSLATAECGLDIALRADIAQVRAKSLALGDLFIALVESRCADHPLTLATPRERAR FT RGSHVSFLHPQGYAVMQALIARGVIGDYREPELLRFGLTPLYLSHADIWDAVEILREVL FT DTRAWDRPQYRERAAVT" FT misc_feature 253971..254039 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT CDS 254591..255103 FT /transl_table=11 FT /gene="def" FT /gene_synonym="fms" FT /locus_tag="BPP0243" FT /product="polypeptide deformylase" FT /EC_number="3.5.1.31" FT /note="ortholog of Bordetella pertussis (BX470248) BP0552" FT /protein_id="CAE39984.1" FT /translation="MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGV FT GLAATQVDVHERVVVIDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVER FT AARIRCKALDQQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKA FT EREAERA" FT misc_feature 254594..255064 FT /note="HMMPfam hit to PF01327, Polypeptide deformylase, FT score 1.7e-70" FT CDS 255244..256107 FT /transl_table=11 FT /gene="fmt" FT /locus_tag="BPP0244" FT /product="methionyl-tRNA formyltransferase" FT /EC_number="2.1.2.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP0551" FT /protein_id="CAE39985.1" FT /translation="MPLVLTQPDRPAGRGLKLTPSPVKQAALAAGIGVAQPRSLRLDGR FT YPDEAAAARAQLERVAPDVMVVAAYGLILPQWTLDLPRLGCLNIHASLLPRWRGAAPIQ FT RAIEAGDAETGVTIMQMDAGLDTGDMLLERAVPIGAQQTAAQLHDELALAGGQAIVDAL FT AALGQGGLAPRRQPDAGVTYAAKLDKAEAALDCSLPAAVLARRVRAFNPVPGATIRLPG FT LDDPVKVWRAQALEQAAGGPPGAVLRADAQGIDIATGQGVLRLLELQKAGGKRQPVDVF FT VRGWQP" FT misc_feature 255250..255732 FT /note="HMMPfam hit to PF00551, Formyl transferase, score FT 1e-35" FT misc_feature 255802..256101 FT /note="HMMPfam hit to PF02911, Formyl transferase, FT C-terminal domain, score 2.6e-25" FT CDS complement(256130..256756) FT /transl_table=11 FT /locus_tag="BPP0245" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0550" FT /protein_id="CAE39986.1" FT /translation="MSSDPTYRITDLDTLQARYGTPAPNSLTKEVDYLHPHYRAFVEAA FT PFVVLATSGPQGLDASPRGDGPGFVVIEDDRTLLLPDRRGNNRIDSLRNIVADPRVALL FT FLVPGVGETLRVNGQAEISVEPALLARFAVDGKPPRSVLRVRVETVFFQCSRAIVRSAL FT WNPDARVDRASLPSAGQILGALSAGTLDGERYDRELPERVRATLY" FT CDS complement(256753..257409) FT /transl_table=11 FT /locus_tag="BPP0246" FT /product="probable haloacid dehalogenase-like hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0549" FT /protein_id="CAE39987.1" FT /translation="MKYRLAAFDFDGTLADTLPWFESVMDGVADKYGFRKASAADKAQL FT RHRSTREIMAFLEVPVWKLPAIMAHVRQLMREIDPAVRMFAGVPAALAQLKAAGLRLAV FT CSSNSLDNVRRVLGPQTGALIDDYECGADLFGKPAKLARLMARHGVERTRCILIGDEMR FT DIDAARKAGVMAGSVAWGYNHVDALRARAPDEIFEQVTDLAAVLAPGFPSFPPTP" FT misc_feature complement(256867..257403) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase, score 2.3e-21" FT CDS complement(257406..258008) FT /transl_table=11 FT /locus_tag="BPP0247" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0548" FT /protein_id="CAE39988.1" FT /translation="MTHAMPTQPAAPRTTACLLRDYFRAKDENRPLYMARAFAPDAVLK FT MALRTQAIAFPPESHGLAAIADTLSRKFGQTYDNVYTFYLAHPGEHAVLPEFSCDWMVG FT MTDKASGEVRVGCGSYDWVFQAEPHLVKRLTITIESMLTLPADTAGPVFGWLTALPYPW FT TDAQRVVASAPPIESLAPIMYWLRRDVRRADPTGGMA" FT CDS complement(258015..258641) FT /transl_table=11 FT /locus_tag="BPP0248" FT /product="putative lysine decarboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0547" FT /protein_id="CAE39989.1" FT /translation="MQLVTSAWTLERVMKIQNICVYCGSNSGRQPEYIEHAQGFARELV FT KRGLGLVYGGASVGIMGAVADTVMAEGGRVIGIIPEALMKKELAHRGLTELHVVQSMHE FT RKTLMAQKADGFVALPGGAGTLEEIFEIWTWAQLGMHQKPCGLLNIAGYYDLLGQFLNH FT TVDEAFMRPQHRAMLAIDHDPAALLDHFASYVAPTVSKWIAPDEH" FT misc_feature complement(258060..258461) FT /note="HMMPfam hit to PF03641, Lysine decarboxylase family, FT score 1.5e-59" FT CDS 258783..259352 FT /transl_table=11 FT /locus_tag="BPP0249" FT /product="bacterioferritin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0546" FT /protein_id="CAE39990.1" FT /translation="MSSILGVSDMEQSATQPHRAFAVDVKAIRAKARRDIESGAVTEGY FT RADRATVLRLLNEALATEVVCWLRYKRHAFMARGLSAEPVAAEFAEHAAEEQGHADRLA FT ERIVQLGGEPDLSPVGLLERSHAEYVEGKDLKDMIKENLIAERIAIDSYRQMVDYVGEA FT DPTTRRLLEDILAMEEEHADDLSDLL" FT misc_feature 258930..259346 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01334, , score 1.6e-06" FT CDS complement(259423..260742) FT /transl_table=11 FT /locus_tag="BPP0250" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0545" FT /protein_id="CAE39991.1" FT /translation="MSSPKVGFVSLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVV FT VNTCGFIDSAKAESLEAIGEAIAENGKVIVTGCMGVEESVIRQVHPSVLAVTGPQQYEE FT VVRAVHGVAPPRQDHNPYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDL FT VSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPVKTRMTELCAA FT LSELGVWTRLHYVYPYPHVDEVIGLMADGKVLPYLDIPFQHASPRILRAMKRPAFEDKT FT LARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYSPVEGAP FT ANTLDNPVPDEVKQERWERFMEHQQAISTARLSTRVGREIDVLIDSVDEEGAVGRSSAD FT APEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA" FT misc_feature complement(260260..260322) FT /note="PS01278 Uncharacterized protein family UPF0004 FT signature." FT misc_feature complement(260449..260730) FT /note="HMMPfam hit to PF00919, Uncharacterized protein FT family UPF0004, score 7.5e-38" FT CDS complement(260849..261040) FT /transl_table=11 FT /locus_tag="BPP0251" FT /product="putative 4-oxalocrotonate tautomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0544" FT /protein_id="CAE39992.1" FT /translation="MPTVRVELSPGRSAEQKTRYMQEVTRLTVEILKCPVESVDVIFIE FT IPPTEWAHGGKFYAQPPA" FT CDS 261292..262665 FT /transl_table=11 FT /locus_tag="BPP0252" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0543" FT /protein_id="CAE39993.1" FT /translation="MDRPAHRATANPPLRRGGGGAGAMNPDRLLGEPLRLPDSLWAATA FT PAAPALPSLDGRHVADVLIIGAGFTGLSAAIRLCREGRRVIVLDAAEPGWGASGRNNGQ FT VIAGLKQDPEVIETLYPGEAGRRLVRFGSEAPGVVFRLIDEFGIDCAAGNKGWIQPAFT FT GSGLRAVERRCQAWGERGVATRLLQADELARLLGTPRYRLGWLDPRGGHVQPLAYARGL FT ARVALSLGATIFGGARAEALRREAGQWLARCQAGEARAPSVIVATGGYADRLVPGLRTS FT IVPVRTAQVTTRVLPEAMRREILPQGHVSSDTRQLLTSFRLSPDGRLVMGGAGATAGLE FT HARIVPFLHRAGAELFAHLGKLDWEYHWSGYFAVTTDHLPHVHEPAAGMHVSLGCNGRG FT IAISTALGIELAERVLGAPAESLSVPVSDLRSVRLHGFRHLGVAAATRYKRLQDRLAM" FT CDS 262736..263731 FT /transl_table=11 FT /locus_tag="BPP0253" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0542" FT /protein_id="CAE39994.1" FT /translation="MKGYARENRRRTLLAAALAGCLLAGGTVHADESGADKRPIRLIVG FT FSAGGYTDVIARILAEQLGQSLNRSVIVENRAGANGAIGATAVARSAKDGATVLLSPPG FT LITNTLISPELSYSIQDFAPVARVTSLLNVLVVSANSKYRSLAELLDGARKADGKLTYG FT SGGVGSSNHLSMALLMRQAQVQMLHVPYKGSSLAETDVMAGHVESMFSGAASAIPHVNG FT GRFHALAVSGDKRIGALPDVPTVAQAGVPGYSHGTWLGLFVAAGTPAQAVAGLNQAVNK FT VMADARVQARMTDLGADAFQANTVDEFTAFVQSDLAAQKTLIGNASLSGN" FT misc_feature 262736..262825 FT /note="Signal peptide predicted for BPP0253 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 30 and 31" FT misc_feature 262898..263719 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.8e-82" FT CDS 263816..264490 FT /transl_table=11 FT /locus_tag="BPP0254" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0541" FT /protein_id="CAE39995.1" FT /translation="MNLVAPMPETAQRKVAGTATERAYGELRKRILEGSLAEGAPIRQD FT EVAADLGISKIPVREALVRLQSEGLVVFTPNAGATVAVLTAADYVEMLDLRLAIECRAL FT ELAVPNMAPSDLAQARRLLDAYSRHENASEWSELNAQFHDCLYAPANRPRLLAMIRSVR FT DHMGKLMRLRVTEAAGHDRSHQEHLKILAACEEGNAARAVALLRKHIEHTQREVQAYFR FT KA" FT misc_feature 263882..264058 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.3e-05" FT misc_feature complement(264486..264491) FT /note="duplication due to IS1002 insertion" FT CDS complement(264487..265437) FT /transl_table=11 FT /locus_tag="BPP0255" FT /product="transposase for IS1002" FT /note="transposase for IS1002 element" FT /protein_id="CAE39996.1" FT /translation="MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKW FT LARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVA FT RYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNR FT GIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLHQATAYYASLGVRIDRVMTDNGSG FT YVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQ FT PFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDS" FT repeat_region 264492..264515 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1002 element" FT repeat_region complement(264492..265522) FT /note="IS1002 insertion sequence" FT misc_feature complement(264520..265056) FT /note="HMMPfam hit to PF00665, Integrase core domain, score FT 6.3e-30" FT repeat_region complement(265499..265522) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1002 element" FT misc_feature complement(265523..265528) FT /note="duplication due to IS1002 insertion" FT CDS complement(265560..266366) FT /transl_table=11 FT /locus_tag="BPP0256" FT /product="putative dioxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0566" FT /protein_id="CAE39997.1" FT /translation="MHDLDQTSQQYRKLGFVVPPSGKHQEWGTENLCIMFPGDYLEIRG FT IGDPNKFLAGVDKFLAKGEGLYSVAFNAASAQESYQAGLAAGLEIEPPRHLNRKLVLED FT RTLDLHFETVMLGHDLYPGLTHANLCQHLTADTLRQPGWTDHPNGVVAFGRLVGVVSDF FT DAAAAAYTRLIGAENVTRGDDHILLDFGAGADIELIGPAEAQRRGDAQPQLGDAYLASA FT TLLVKDAATTAALFEAGGVRFTRQPGGELKVDPADASGAHLYFKQA" FT CDS 266488..267318 FT /transl_table=11 FT /locus_tag="BPP0257" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0567" FT /protein_id="CAE39998.1" FT /translation="MRMGRGAAPAAIQRGESTMNTPLRVGIVGCGVLANAMAGHLARQP FT RPVEIVGCLVRDPGRARGALPCHGSWEALLAQRPEVVVECAGQAALAQYAQAILAAGVD FT LVPASVGALADDALRGALLEAAAAAGARIRIPSGAMVGIDGLAAARHVGVAEVLYRGTM FT PPVALQRYVSGPLPERGLAFAGSAREAVARFPKNANLTGTIALAGIGFDRTRVEMLIDP FT DATANVHELLARGEFGDFHARVSGLRISESSPSSRIVAGSLAQAALGSGFLALS" FT misc_feature 266554..267288 FT /note="HMMPfam hit to PF01958, Domain of unknown function FT DUF108, score 1.8e-32" FT CDS complement(267364..267993) FT /transl_table=11 FT /locus_tag="BPP0258" FT /product="putative amino acid efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0568" FT /protein_id="CAE39999.1" FT /translation="MTLATLALFVLASGLIIVTPGPTVLLALSNGSRHGVRRACWGMAG FT AVLADLVLVAAVAGGLGMLLAASEPAFQALKWIGAGYLAYLGWRLLRSDAALVLPALAA FT GGGDSGAGALFSRSFLVALTNPKALLFMSAFLPQFIDPAAALAPQYGALALVLAVLNLA FT AMLGYAALGARLVRVLRTGGLRWINRLCGGMLVLLAGTVALYRRAG" FT misc_feature complement(join(267379..267435,267475..267540, FT 267586..267651,267796..267861,267907..267972)) FT /note="5 probable transmembrane helices predicted for FT BPP0258 by TMHMM2.0 at aa 7-29, 44-66, 114-136, 151-173 and FT 186-205" FT misc_feature complement(267466..267789) FT /note="HMMPfam hit to PF01810, LysE type translocator, FT score 3.3e-11" FT misc_feature complement(267913..267993) FT /note="Signal peptide predicted for BPP0258 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.963) with cleavage site FT probability 0.729 between residues 27 and 28" FT CDS 268011..269435 FT /transl_table=11 FT /locus_tag="BPP0259" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0569" FT /protein_id="CAE40000.1" FT /translation="MAGQACSVTPAAGRVQCPATISVLPSETFHMPSPVDSSVLAPPLS FT AVLLGAAAAVQAVRKGRSLTDALAETPPALRPAVQAISFHAMRQLGWADAVAETLVRRS FT PGPLFDALLRVALSLLRAAPGAAAQPGAPQYAPHTVVDQAVTAAAGQRKLAAYKGLLNA FT SLRRFLREREALQDSVAERPAARWNHPSWWVELLERAYPEQWRGILAGANVPAPLTLRV FT NRRRATVEQVRQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAGAQLAA FT PLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGLRTPR FT VRLAAADASDLDAWWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQAR FT IADALWRTVAPGGRLLYVTCSVFPAEGREQTEAFARRHADAAPLDAPGQLLPVAIDATP FT QAQHDGFFYALFAKRT" FT misc_feature 268632..269423 FT /note="HMMPfam hit to PF01189, NOL1/NOP2/sun family, score FT 7.5e-65" FT misc_feature 269088..269123 FT /note="PS01153 NOL1/NOP2/sun family signature." FT CDS 269454..270065 FT /transl_table=11 FT /locus_tag="BPP0260" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0570" FT /protein_id="CAE40001.1" FT /translation="MLLRICRMSMILRLFVALLLVFGSFSPITSGLAHAADPHVQRIEP FT LVRDGKLELSADIHFELNDQLRDAAQRGVPLYFTADLQITRSRWWWFDHTLVDKSITWR FT IAYNALTRQWRAGAGELSLPVASLDDAMDLVRHIRNWEVADASEFDPGVRYGGQLRVRL FT DTSQLARPLQVNALNSSSWSPATPWAEFSFALAEPARDPS" FT misc_feature 269454..269558 FT /note="Signal peptide predicted for BPP0260 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 35 and 36" FT CDS 270062..272371 FT /transl_table=11 FT /locus_tag="BPP0261" FT /product="putative two-component sensor kinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0571" FT /protein_id="CAE40002.1" FT /translation="MRMFLRLALVVGGVSGLALLGLLAWSTGNASRFARYYDTLLILNG FT IFAFALFVWVVALTVRLARQIRRRQFGARLTARFALAFALIGVVPGALIYILSVQFMSR FT SIESWFNVRVDSALESGLNLGRAALDSQLADMDVRARAMAAELNNMSDNDIPLALTRLR FT EANGAQEATVFTGSGRILAFSTNTYGQLLPPSLPATLLNQLRLARGYSAAEADDPAIPG FT AEGGLHLRVVIPLSAPARFDGILGGSAEPRWLQLMHAVPDQIAHNANRVQQGFRDYQEL FT ALSRLGLRKLYGITLTLALLLAVFAAIAVALSLSKRLVRPLLRLAGGTQAVGVGDFRPL FT PEPPERDEVGQLTRSFNAMTRQLEEARQMVESNRRQLERSNVYLESVLSNLSSGVIAFD FT EGFRVTTVNQGAQTILQADLRSVIGRSLETVDGMLEFAQVVRQAFAAHAAVGSERLHWQ FT QQFEITPGLDETGGQPVTLLARGTHLRVDGRGNGYLVVFDDITEVISANRTVAWGEVAR FT RLAHEIKNPLTPIQLSAERLAMKLADRLQPADAQMLIRSTNTIVNQVGSLKQMVDDFRE FT YARMPPAVMQRIDLNALVADVLSLYGWDPGDGGGRGAARVLNLDVELAPGLPDIEGDPT FT QLRQVIHNLLSNARDAVAEQGGEGRVKVTTQIVQSEQPDGAQQRAVRFTVADTGPGFPP FT QVMQRAFEPYVTTKAHGTGLGLAIVRKIIEEHGGRIDLANRKEGGARISILLTRLALPS FT DTMDATAQEKDNAATQ" FT misc_feature 270062..270151 FT /note="Signal peptide predicted for BPP0261 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.360 between residues 30 and 31" FT misc_feature join(270080..270139,270167..270235,270296..270364, FT 270935..271003) FT /note="4 probable transmembrane helices predicted for FT BPP0261 by TMHMM2.0 at aa 7-26, 36-58, 79-101 and 292-314" FT misc_feature 270947..271156 FT /note="HMMPfam hit to PF00672, HAMP domain, score 1.3e-12" FT misc_feature 271592..271810 FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 3.4e-09" FT misc_feature 271955..272308 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 5e-35" FT CDS 272382..273071 FT /transl_table=11 FT /locus_tag="BPP0262" FT /product="putative two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0572" FT /protein_id="CAE40003.1" FT /translation="MARILVVDDEVGIRELLSEILYDEGHTVELAENAAQARAARLRMR FT PDLVLLDIWMPDTDGVSLLKEWASQGLLDMPVIMMSGHATIDTAVEATRIGAMDFLEKP FT ITLQRLLKTIEAGLARGRAPRAAPPLAHAAATPVAVALEDELDPPQPFQAPVEAPAASN FT GQLGSISLDQPLREARDEFERIYFEYHLVRENHSMTRVSERTGLERTHLYRKLKQLGIE FT SARKRGT" FT misc_feature 272385..272747 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 1.9e-34" FT CDS 273068..274447 FT /transl_table=11 FT /gene="trkA" FT /locus_tag="BPP0263" FT /product="Trk system potassium uptake protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0573" FT /protein_id="CAE40004.1" FT /translation="MKILIMGAGRVGTSVAENLVSEQNDITVIDTDVGQLRYLQDRFDL FT RVVQGDGIQVSVLESAGADDTDLFIACAASDAANLVACKIAREVFNVPRRIARIRMPEF FT ADHPELMSDEGFAIDALISPERSVTTYLHSLIEFPEALQVVEFAGGRVSVITVRVGHGS FT PMAHHPVDELREVWPDVTARIVDVLRDGRPLHAGTGTVVAPGDEVVLAVDTRHARRAVR FT QLREAEKTVHRVMIAGGGNIGLRLARQLAEEGYSVRIIEHDAKRCEYLAAELPDNVLVL FT HGNGTDEALLERENIEDMDTWLALTSDDEDNIMSSLLAKRLGARKVIALINRQAYGELM FT QGSHIDVAVSPSQATMSELLRHVRRGDVVAVHRLRQGVAEALEAVAHGDRSTSRVVGRA FT VGKIGLPKGASIGVLVRGDEIIVPDADTEIQSDDHVIVFVPSRRQMPRVEKLFQVSASF FT F" FT misc_feature 273071..273439 FT /note="HMMPfam hit to PF02254, TrkA-N domain, score 3e-22" FT misc_feature 273482..273751 FT /note="HMMPfam hit to PF02080, TrkA-C domain, score 0.0001" FT misc_feature 273764..274120 FT /note="HMMPfam hit to PF02254, TrkA-N domain, score FT 2.5e-27" FT misc_feature 274163..274435 FT /note="HMMPfam hit to PF02080, TrkA-C domain, score FT 3.9e-11" FT CDS 274496..275965 FT /transl_table=11 FT /gene="trkH" FT /locus_tag="BPP0264" FT /product="Trk system potassium uptake protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0574" FT /protein_id="CAE40005.1" FT /translation="MKRLLATFYVLGLTMVVFALTMVIPLAVAYIGQDAGFTAFLEGFL FT LALGIGAGTWLATRRGRSELHARDGFLLVSTVWAALPALAAIPLLLYYDDVGIPLSFTD FT AYFEAMSGLTTTGATVLSGLDALPASINLWRATLIWIGGMGILVLAVAILPLLGVGGHQ FT VVRAETPGPMKDERLTPRIASTAKALYAVYFGFSMVCLLAYRAVGLSWFDAWCHMATTM FT GLGGFSTYDDGFAHFDSLSVELVAIVFMTISGINFATHFNALRQRNWRAYVVCPQTIPY FT LTIMLGAGLVISVFLYIKGVYGDPWEALRYGMFNTISVATTTGYANVDYASWPLFAPLT FT MLLLSAFVTSAGSTGGGIKMIRIILLVKQARNELVTMLHPHAVSPVRIGSRVVDQRVMA FT SVLAFMLVYGLSVGVLSSLLLLSGLDLITAFSAVMAMINNTGPGLGPLGPMGNFSVLND FT FQTWVCTFAMLIGRLELLTVLVLFTPLFWRK" FT misc_feature 274496..274582 FT /note="Signal peptide predicted for BPP0264 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.611 between residues 29 and 30" FT misc_feature join(274520..274588,274598..274666,274703..274771, FT 274904..274972,275063..275131,275210..275278, FT 275336..275404,275501..275569,275690..275758, FT 275888..275956) FT /note="10 probable transmembrane helices predicted for FT BPP0264 by TMHMM2.0 at aa 9-31, 35-57, 70-92, 137-159, FT 190-212, 239-261, 281-303, 336-358, 399-421 and 465-487" FT misc_feature 274685..275956 FT /note="HMMPfam hit to PF02386, Sodium transport protein, FT score 5.5e-79" FT CDS 276045..276578 FT /transl_table=11 FT /locus_tag="BPP0265" FT /product="probable MarR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0575" FT /protein_id="CAE40006.1" FT /translation="MPEPDKQATRKKRTTSSLTDSTVFDPAKQVLWSRPGYLVRRLNQI FT HYALFYEECKTQNVTPVQYGVLTALSLSPWLDQTAIGMELGLDRTTTADVIKRLQERGL FT VERRVNPNDKRSRQAVITQEGLRIMGLLQGGMARAQQRLLEPLSPRNREIFMKLLSTLV FT DANNQYSRTALKAM" FT misc_feature 276219..276530 FT /note="HMMPfam hit to PF01047, MarR family, score 5.2e-20" FT CDS complement(276586..277581) FT /transl_table=11 FT /locus_tag="BPP0266" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0576" FT /protein_id="CAE40007.1" FT /translation="MNALDLDVLQHARDWLASGRRVHLVTVVQTWGSAPRQAGAMLAVR FT DDGQVVGSVSGGCIEDDLIARARAGTLPERAERLTYGVTRDEATRFGLPCGGTLRLVAE FT PLAPRDAWLDEVLQAIAEHRLVRRTIDLHTGAAALEAAAPAEGPDFDGRMFRAVYGPHW FT RLLIIGANQTAQVRADIAATLDFQVIVCDPREEFHAAWHAPHATLVTTMPDDTVLEIGT FT DERTAIVALTHDPKLDDMVLLEALKSRAFYVGALGSRANQEKRRERLRLFDLGDEDIAR FT LRGPVGLPIASRTPAEIAVAVAAELVWVRNTLGDREPSGAPLPAALAPAR" FT misc_feature complement(276634..277545) FT /note="HMMPfam hit to PF02625, Uncharacterized BCR, FT COG1975, score 7.8e-32" FT CDS 277664..278314 FT /transl_table=11 FT /locus_tag="BPP0267" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0577" FT /protein_id="CAE40008.1" FT /translation="MPRVDHGSPQAGPPAPCVGILLAGGQGRRFAAASGGQDKLLARLA FT DGTAVAVRAAAALREATDAVVAVVRPESAVLAALLRGQGCHVLESEQAREGMGASLAAA FT ARFLLAGQVPDMPERADVCLVALADMPWVRRDTLSAVRAAACADGITVPVHQGRRGHPV FT AFGRSLWGELAALRGDVGARELLRRHRVAAVEVDDPGVAADVDTPGDLAGDRA" FT CDS 278637..279599 FT /transl_table=11 FT /locus_tag="BPP0268" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0578" FT /protein_id="CAE40009.1" FT /translation="MTKVRKIAFEEHFTAVGFGDYSKAFVQHLDPGFAAELGARLTDFG FT AGRLAEMDAAGIDYAILSQTGPGVQGEPDAAVALRRARENNDFLAERIARHPDRFGGFA FT ALPMHDPKTAAAELTRAVRELGFKGSLVNGHTNGVYYDNPAYDAFWEQMQELDVPLYLH FT PFDAYVLPHAYKGHPELAGATWGWGVETGTHALRLLFGGVFDRFPKLKIILGHMGEGLP FT FQRWRFDSRFAAYPYGVKLQRAPSEYIGSNILITTSGVCSHPTLVGAIAEMGAEAVMFS FT IDYPYESTALAVEFIESAPLDAATRELVCYGNAARLFKL" FT CDS join(279625..279714,279718..280377) FT /pseudo FT /transl_table=11 FT /gene="maiA" FT /locus_tag="BPP0269" FT /product="maleate cis-trans isomerase (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0579" FT /db_xref="PSEUDO:CAE40010.1" FT CDS 280397..281218 FT /transl_table=11 FT /locus_tag="BPP0270" FT /product="probable hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0580" FT /protein_id="CAE40011.1" FT /translation="MSNFRYGGNVQANGIRQHYLRYGGERAGRDPVIIVPGITSPAVTW FT GFVGERFGEQFDTYILDVRGRGLSQSGPQLDYGLDAQAEDLLAFARALGLSRYSVVGHS FT MGARIGIRAARTGEAGLARLAMVDPPVSGPGRRAYPSKLPWYVDSMAQARQGMTGEQMK FT AYCPSWTAEQLQLRAEWLHTCEERAVIASFEGFHEDDVHADLPRVRAARLLMTAERGEV FT VLDADVAEIEALAPGTAHVRVAGAGHMIPWDNEEGFYAAFGDFLGARLRAG" FT misc_feature 280562..281194 FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 2e-09" FT CDS 281246..282277 FT /transl_table=11 FT /locus_tag="BPP0271" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0581" FT /protein_id="CAE40012.1" FT /translation="MPVSDYEMIRAWTQVLSLSRLQAGQTVTVLTSAATHPQTLGTALV FT AAQSLGAVVNRLDLPPVNGEKALSRDALAYLGTTPLTGNKAAIAMLKASDLVLDLMTLL FT FSPEQHEILQGGTKILLAVEPPEVLARLVPTEGDRQRVKAAAERIAGAREMTVESEAGT FT RLRCGLGEFPAISEYGYVDEPGRWDHWPSGFALTWPDEGSANGTIVIDRGDILLPQKSY FT VSEPIVLTVENGYATRIEGGLDAELLREYVATFKDPQAYAISHIGWGLQPRASWTTLGL FT YDREATIGMDARAYEGNFLFSLGPNNEAGGSRTTACHIDIPLRRCTVRLDGREVVREGK FT VLD" FT CDS 282293..282910 FT /transl_table=11 FT /locus_tag="BPP0272" FT /product="putative isochorismatase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0582" FT /protein_id="CAE40013.1" FT /translation="MGNDLGSYERQGFGAALLLKAPYGLLIVDFVNGFADPAQFGGGNI FT AAAIETTRTVLAAARERGWAVAHSRIVYADDDADGNIFSIKVPGMLTLKEHAPASAIVP FT QLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMSAGF FT RPLVLSDCVGDRALGPHEANLFDMRQKYAAVMTHDEALAKTK" FT misc_feature 282344..282898 FT /note="HMMPfam hit to PF00857, Isochorismatase family, FT score 1e-07" FT CDS complement(283025..283540) FT /transl_table=11 FT /locus_tag="BPP0273" FT /product="probable ring hydroxylating beta subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0583" FT /protein_id="CAE40014.1" FT /translation="MSQTFFPPRTIDPARAIALKLEVEEFNADYCAALDGGQVESWPDF FT FTETALYRVTARENAELNLPVGLVYAEGRDMMHDRAVAISRTQMFAPRYMLHMVSNTRV FT TSETPDGEIAASSTFLLMQTLVEGPTTLHLAGSYHDRFVRENGALKLQERQVIYDTAIL FT ANDLVYPV" FT misc_feature complement(283043..283441) FT /note="HMMPfam hit to PF00866, Ring hydroxylating beta FT subunit, score 0.00022" FT CDS complement(283555..284844) FT /transl_table=11 FT /locus_tag="BPP0274" FT /product="probable Ring hydroxylating alpha subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0584" FT /protein_id="CAE40015.1" FT /translation="MYQSQTVIGRTLAAKDAPLSECAWPQDALHFIPDWVYTNNAVYEQ FT ELEKIFHGKTWNFVALEAELPNAGDYKRSYVGATPVVVSRAEDGSINVFENRCAHRGAE FT FCRHNQGNAKEFVCPYHQWSYDLKGNLQGIPFKRGVNREGGMPKDFKNDEHGLRRLHVT FT TRNGVVFASYSSEVEPIAEYLTPEILADFDAVFPGKKLKILGYYRNELPCNWKMYHENL FT KDPYHATLLHSFLVVFGLLVAGNKSAMLVDSVHGRHGTMASAKSEDKYATVSEENKKEM FT RSFHDGLRLRDDRFLEFIKEFDSPWSVTMQTIWPNLIVQREMNTLGVRHIIPNGPDSMI FT MQWTMFGYEDDTEEMQRHRLRQGNLMGPAGFLGLEDNEAMKFVQEGVRRASTDVNVIKL FT ESGKQGTSNTLISEAAIRSMYSYYREVMGF" FT misc_feature complement(283561..284307) FT /note="HMMPfam hit to PF00848, Ring hydroxylating alpha FT subunit (catalytic domain), score 0.00016" FT misc_feature complement(284344..284682) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, FT score 1.7e-31" FT misc_feature complement(284482..284553) FT /note="PS00570 Bacterial ring hydroxylating dioxygenases FT alpha-subunit signature." FT CDS complement(284880..286142) FT /transl_table=11 FT /locus_tag="BPP0275" FT /product="putative ferredoxin reductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0585" FT /protein_id="CAE40016.1" FT /translation="MDEIQSIVIVGAGQADAVAAASLRQLGYRGGLTLIGQEAHPPYER FT PPLSKAVLQGTATHAEAAVHPAGFYAENDIALLTETAVAALDPIARTVRLADGRTLPYD FT RCLLATGGHARELPALPRGRAGVHYIRTLNDALDLRAALRPGVRAAVIGGGFLGLEVAS FT TARELGAEVTVIENGSRLLERALPAIVSDWLAERVRASGVDLRLGGAIAAIGDGPPYAI FT TLADGTQVNADLIVVSIGLAPEVTLARQAGLPLDDNGGICVDAQARTADPHVYAAGDCA FT SQPRACLGTAARFESWQNANEQARAAATAMLGLAPAAEPYPWFWTDQYGCNIQILGLPQ FT PGLRYVCRPQTDPQAAPRVLWIGLRDGVPCHGIAVNAGGDLRQLRVLFERGIPVDPHRL FT ADPAEALKPLVKAWQAAVAVA" FT misc_feature complement(285273..286127) FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, score 3.8e-74" FT CDS complement(286145..286456) FT /transl_table=11 FT /locus_tag="BPP0276" FT /product="ferredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0586" FT /protein_id="CAE40017.1" FT /translation="MNWIKIATTDQLEDDEVMPVTAGEAKLALYRSEGEYFASDNVCTH FT AYALLSDGYLEDGCIECPLHQARFDIKTGKAMCAPATADIRIYPLKIENDDIYVDLQA" FT misc_feature complement(286172..286453) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, FT score 4.7e-22" FT CDS 286926..288029 FT /transl_table=11 FT /locus_tag="BPP0277" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0589" FT /protein_id="CAE40018.1" FT /translation="MQRRRFLAQAAGAAGAGLAAVGMPAMAQANPTVRWRMSTSWPKSL FT DTIYGSADELCKRVGQLTDGKFEIRAFPGGELVPSAQNMDAVSNGTVECNHVLSTMYIG FT KNTALTFDTGLSFGLNARQHNAWIHYGGGLQQLRELYKKYNIVNHVCGNVGVQMGGWYR FT KEIKSTADLNGLNMRIGGIGGMVLSKLGVVPQQIPPGDIYPALEKGTIDAAEWIGPYDD FT EKLGFNKVAPYYYSPGWFEGSASITSMVNDKAWEALPPAYQAAFEAACGEQSMRMLSNY FT DARNPLALRKLIAGGAKVSFFPKEVMDAVYKASQQLWTELSEKNPDFKAIYPGWKKFQE FT DEAGWFRVAENALDNYTFAAVARAQAK" FT misc_feature 286926..287006 FT /note="Signal peptide predicted for BPP0277 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.666 between residues 27 and 28" FT misc_feature 287034..287900 FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 7e-65" FT CDS 288059..290437 FT /transl_table=11 FT /locus_tag="BPP0278" FT /product="oxidoreductase, large chain" FT /note="ortholog of Bordetella pertussis (BX470248) BP0590" FT /protein_id="CAE40019.1" FT /translation="MTTEHTGAEVGAGSRQGVGARVPRKEDARHLHGKGNFVADMAMPG FT LCEVAFLRSPLAHARITDVRVPESVRDKVVLRSMMGDARDIAADSTLPTYQPSVQPPLA FT SGKVRFVGEPVAMTFAPTRAEAEDHAELVEVDYDDLPVYADVASAQQATSDLVHEHWRD FT NVFVTLNADRDFDEHAARAEVVVKRKIDLARQCMVPMEGKAVLAYWDHQADQLVVISAT FT QVPHMIRSVLAQCLDLEQGRVRVVSPDVGGAFGYKCVLQQEELCVAWLAKTYKRPFRFI FT EDRREHLTAGANSREHHYEMTAYADKRGKLLALDARITIDGGAYSVWPFTIGLEPGQAV FT GNLPGPYGFRGYRCETRCVATNKPGFVPYRGVARTGVCFAIELTMDAVAREVGREPWEV FT RLENLVQPEQMPYVNVTNKHFDSGDYPASLRKALEMIDIDGVRTRQARGEADGRRIGVG FT VATYTEQAAHGTSVFAAWGTPVIPGFDQATVRVTPDGGLEVRVGVHSHGQGMETTFAQI FT AHEILGIDVARIKVLHGDTGQTPFSTGTYASRSLVMSGGAVSQACKRLLPRMRHIAAHM FT LGVADDAVTLQDGIYRAGEKSVATGDVADAWYLRPQLLPPDVDPAGLEVNVGYKPKVDT FT GCFTYASHAAVVAVDPDTGAVEILDYVVVEDCGTMINPMVVEGQTIGGIAQGIGTAFYE FT ETPYDANGQPLASTLADYMLPGPTEVPNMRLHHFETPSPHTEFGAKGMGEGGAIAPPAV FT LFNAVNDALRGLGAAELSRTPLTPIRVLQAIAQGAGEAA" FT misc_feature 288152..288484 FT /note="HMMPfam hit to PF01315, Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain, score 4e-16" FT misc_feature 288497..290221 FT /note="HMMPfam hit to PF02738, Aldehyde oxidase and FT xanthine dehydrogenase, molybdopterin binding domain, score FT 1.1e-126" FT CDS 290434..291270 FT /transl_table=11 FT /locus_tag="BPP0279" FT /product="oxidoreductase, medium chain" FT /note="ortholog of Bordetella pertussis (BX470248) BP0591" FT /protein_id="CAE40020.1" FT /translation="MKAAQFEYFRAESTQQALQWLRQHDGRAKLMAGGQSLGPMLNLRL FT ARPPVVIDISGVPALREVGERGGRVRVGAAVTHAEIEDGVHAALRGSALQQVATGIAYR FT AIRNRGTVGGSLAHADPAADWVLTMVALGADIEIAGVDGERMVPAESFMQGAYTTVVGE FT GELIAAVHVPAMTDGARWGYYKFCRKTGEFAEASCAAWFEPARRVARIAVGALDGAPCL FT LPGLADAVARQGAAVLQAERIDEAVAQAMPGKDALHRKLHATAVARCLKQALGVQE" FT misc_feature 290443..290958 FT /note="HMMPfam hit to PF00941, FAD binding domain in FT molybdopterin dehydrogenase, score 2.6e-27" FT CDS 291267..292454 FT /transl_table=11 FT /locus_tag="BPP0280" FT /product="putative iron-sulfur binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0592" FT /protein_id="CAE40021.1" FT /translation="MTMVQVTLEVNGRQVAHEAPPRMHLGDFLRDQARLTGTHLGCEHG FT VCGACTVLVDGQPVRSCITYAVACEGRQVTTIEGYDGDPVMARLRAAFTKYHALQCGYC FT TPGMLTTSRDIVLRLPDADEARVRVELSGNLCRCTGYMGIVGAVMSVLRDLREQPDAAV FT QALRAAAADGRLPAPRGEQPIAFQPFTPSAPAAAQAAPRPAAAASPASGKGNQIVDAFT FT VPFPAAEVWAFMVDLPAVAACLPGAVIEETDGQRVKGKIAIKFGPMAAAFNGAARLERD FT EEAMRAVFRGAGQDSLSQSRATGDIAYQVEAVSENETRVKVDLQYALQGPLAQFSRSGL FT VQDFVRRMIADFGKNVTARLRQPGGEALPQAQFNPVAMFFSVLWMRVKRWFGRGG" FT misc_feature 291288..291470 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain, score 6.5e-10" FT misc_feature 291390..291416 FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature 291492..291716 FT /note="HMMPfam hit to PF01799, [2Fe-2S] binding domain, FT score 2.3e-23" FT CDS join(292489..293085,293089..293517) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0281" FT /product="putative exported protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0593" FT /db_xref="PSEUDO:CAE40022.1" FT misc_feature 292489..292575 FT /note="Signal peptide predicted for BPP0281 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.754 between residues 29 and 30" FT CDS 293514..294302 FT /transl_table=11 FT /locus_tag="BPP0282" FT /product="probable ABC transporter, ATP-binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP0594" FT /protein_id="CAE40023.1" FT /translation="MSVAAVSAAGVRKKYPGERGVQALETISVDVPAGRFVSILGPSGC FT GKSTFLRCVAGLETISEGELRVAGQPVKGPPDGIGMVFQRDALLEWRNIRRNILLPVEF FT AGKPVARYRDKVDALLRLTGLAAFADNYPRELSGGMRQRAAICRALVDDPALLLMDEPF FT GALDALTRDQMNVELQRIWMETRNTVMFVTHGIAEAVFLGDEVMVFSPRPGRVLETIRI FT DLPRPRPLAVRETAEFGRYVRHIRGLFEQMGLIDEGGRAP" FT misc_feature 293613..294149 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1e-46" FT misc_feature 293634..293657 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 293919..293963 FT /note="PS00211 ABC transporters family signature." FT CDS 294299..295072 FT /transl_table=11 FT /locus_tag="BPP0283" FT /product="ABC transporter, permease component" FT /note="ortholog of Bordetella pertussis (BX470248) BP0595" FT /protein_id="CAE40024.1" FT /translation="MTATGRKCLHAAAGAVSLAVFLLLWEGLGRALEVRPIMLPLPSQI FT ALELAAEWRWYADQAWYTLMTTVAGFAVAVVGGVLIAVMLVSSRWCESFLYPLIVALNS FT VPKVAIAPLFVIWLGTGAEPKIAIAFLIAVFAVIVDTVHGLKSVPQDVLDLGRVLKGSR FT RDFFFKVRLPGALPSIVTGMKVAVSLALVGAIVGEFVSSQRGLGYVIMSAQGTFDTVRV FT FAALTVLAVMGMALFALLVWFERKATPWRTPVEGH" FT misc_feature join(294317..294385,294491..294559,294578..294646, FT 294674..294733,294818..294886,294959..295027) FT /note="6 probable transmembrane helices predicted for FT BPP0283 by TMHMM2.0 at aa 7-29, 65-87, 94-116, 126-145, FT 174-196 and 221-243" FT misc_feature 294728..294961 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.034" FT CDS 295112..295741 FT /transl_table=11 FT /locus_tag="BPP0284" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0596" FT /protein_id="CAE40025.1" FT /translation="MRALLALSRGIDALNLRVGRAVTWVTLLVVLVSAGNAVVRKVFHS FT SSNAWLELQWYMFGAMFLLTAGYTLLKNEHVRVDILSSRLPRHKQIWIEIFGVVFFLLS FT ACILIMVLSWPVFMDSYLSGEQSSNSGGLIRWPVKLLIPVGFALLVLAGLSHLIKCIGF FT LRGQCPDPTARDGSKSAEELLAEEIAREALEREASVQEQRNNHEGR" FT misc_feature join(295172..295228,295271..295324,295382..295450, FT 295508..295576) FT /note="4 probable transmembrane helices predicted for FT BPP0284 by TMHMM2.0 at aa 21-39, 54-71, 91-113 and 133-155" FT CDS 295744..297402 FT /transl_table=11 FT /locus_tag="BPP0285" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0597" FT /protein_id="CAE40026.1" FT /translation="MEFLIANLAPIMFATLVLFLLLGFPVAFALAANGILYGLVGIELD FT LLSPALFQALPQRVFGIISNDTLLAVPFFTLMGLVLERSGMAEDLLETIGQVFGPLRGG FT LAIAVVFVGAMLAATTGVVSASVISMGLISLPIMLRYGYDRRLASGVIAASGTLSQIIP FT PSLVLIILADQLGRSIGDMYRAAMVPGFVLAGLYIAYVVVVSLVKPSAAPALPEEARRF FT REPNGSRGGRSLLVLMLISSLSAYVLGQWLENDTAPVDEQVVVSLLLWGLTAFVIAIAN FT KVFRLKMLSALAERVTFVMIPPLFLIFLVLGTIFIGVATPTEGGAMGAVGAIIMALIRR FT RLTLELLKQAMDTTTKLSCFVVFILVGSTVFGLTFRGVNGDLWVEHLLIGLPGGEWGFL FT IVVSVLTFVLAFFLDFFELAFIIVPLLGPVADKMGIDLIWFGIILAVNMQTSFMHPPFG FT FALFYLRSVAPKDAYKDKITGKVIQPVTTGQIYWGSVPFIVIQLFMVAAVMLFPGMVMH FT YKGGQSTVDPASVKIEVEGGYGGSVYGGGDATPFK" FT misc_feature 295744..295836 FT /note="Signal peptide predicted for BPP0285 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.703 between residues 31 and 32" FT misc_feature join(295780..295848,295918..295986,296023..296091, FT 296104..296172,296191..296259,296287..296355, FT 296431..296499,296527..296595,296629..296697, FT 296707..296775,296812..296880,296923..296982, FT 297001..297069,297097..297150,297211..297279) FT /note="15 probable transmembrane helices predicted for FT BPP0285 by TMHMM2.0 at aa 13-35, 59-81, 94-116, 121-143, FT 150-172, 182-204, 230-252, 262-284, 296-318, 322-344, FT 357-379, 394-413, 420-442, 452-469 and 490-512" FT CDS 297753..298994 FT /transl_table=11 FT /locus_tag="BPP0286" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0598" FT /protein_id="CAE40027.1" FT /translation="MEQIPFVSSAPNTLGIELELQLVDPRSFDLAAASDELLAQLANHP FT IADRVKPEITRSMIELNSSVHEHPAGLLAEMREMRDVLCEAADAVGVGVTGGGAHPFMR FT WQDRAISDTPRFQYLAEMYGYLARQFTVFGQHIHLGVPSGDAAVRMVRGLSPYVPHFIA FT LSAASPYCEGVDTLFSCCRLNAVNSFPLAGHMPADVTDWYRFEAHLAQLRASGLAESIK FT DLYWDIRPKPEYGTVEIRVCDTPLTVERACQLAAFAQALAVQVARDPEPSQQAWLAYRS FT NHFQACRFGLHGSYVTPDGQRVRLVDHLRALFDRLAPVAEELGTGDMLQTLRDEILRNG FT NDARWLRGQFLKVRELPLVVESMAQNWRGQGVQDTPPSAVRRRIRATSEPVGGVCALST FT PQGDPLPGWAERLH" FT CDS complement(299010..300044) FT /transl_table=11 FT /locus_tag="BPP0287" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0599" FT /protein_id="CAE40028.1" FT /translation="MRNNVGHGPPGSLDAGVRPMALITSCLPAPVGGTAIQMSLPPSLP FT SLPIVAADVVRQFSRRGDLAQAQFLYGEVAQRMMGRLRYIRLQPAALLDAGCGAGASLP FT LLRDRFPNAAYTGLDAAEPLLAHARQAWTPGGVAAWLGRLAQRGKPAVSFVRADLAASG FT LPPEQLDLVWSNLALHWHPEPHAVLAEWRRILKVGGLAMFSCLGPGTLRELREALADAG FT LRTATPAFVDMHDFGDLLVENGFADPVMDQETLTLTYETPQRLLEDVRALGGNPARGRR FT AGLAGRAWLDRLHAALEARRGPQGRISLSIEVAYGHAWRAPARRTAPGETHLSVSAIGG FT RRAG" FT CDS 300141..300755 FT /transl_table=11 FT /locus_tag="BPP0288" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0600" FT /protein_id="CAE40029.1" FT /translation="MAALGPATPRCRCCAVRLAPRARHCADCLRLRPAYQRVVAALDYA FT GPYRGLISRYKTACRHELALALADLMLRAIRQADPPLRGPCLLVPVPASAASLRRRGFN FT PAAELAAALAARLGWPLARTQLRPARVPAGRQTLRGRRDRLRGATGRWRALPVPAGATV FT ALVDDVVTTGATAHCAARALLAAGAGRVIVLAAARTPASHG" FT CDS 300782..301300 FT /transl_table=11 FT /locus_tag="BPP0289" FT /product="rRNA methylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0601" FT /protein_id="CAE40030.1" FT /translation="MAVFPSCTRRPRAHPAMFHVVLVSPEIPPNTGNAIRLCANTGAQL FT HLVRPLGFELDDARLRRAGLDYHEWQPVQVHDTLPQALAATGAAAARVFALTTRAPASL FT ADMAFQAGDVFVFGRETAGLSEAHMALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAW FT RQSGCAGSI" FT misc_feature 300830..301261 FT /note="HMMPfam hit to PF00588, SpoU rRNA Methylase family, FT score 1.8e-36" FT misc_feature 300875..300904 FT /note="PS00449 ATP synthase a subunit signature." FT CDS complement(301319..302314) FT /transl_table=11 FT /locus_tag="BPP0290" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0602" FT /protein_id="CAE40031.1" FT /translation="MLERLARAGRLLRRLCAPLAVAALLPAAAHAAWPERPIHLVVPFP FT PGSSPDLLARTIAEPLSQALQQSIVIDNKPGAGGNIGTRMVAQAKPDGYTLLYTINGPL FT VTAPTLYKRTLGYDPLKDLAPVTLVATSPNVLTVPASLPVDNVQDFVKLARERAGALNY FT GSVGPGSSAHLAMEMFKHEAGIDLTQIPYPGFPQVITAIIGGDVHAGFMVPAIAMPHAR FT DGKVKTLAVTSLEPSDALPGIPTMASQGYPGFEAISWNAILAPAGTPAPIVERLNRELA FT TIIDSDAVRKQLAVQYFTPAPSSPQALTERIQAEKARWDQVIGRLNLSLD" FT misc_feature complement(301331..302158) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3.2e-91" FT misc_feature complement(302222..302314) FT /note="Signal peptide predicted for BPP0290 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 31 and 32" FT CDS complement(302369..303424) FT /transl_table=11 FT /gene="gpsA" FT /locus_tag="BPP0291" FT /product="glycerol-3-phosphate dehydrogenase [NAD(P)+]" FT /EC_number="1.1.1.94" FT /note="ortholog of Bordetella pertussis (BX470248) BP0603" FT /protein_id="CAE40032.1" FT /translation="MSQARPATLRVAVLGAGSWGTALAAAASRRHPTVLWARDGAQAQA FT MAARHENTRYLPGVALPPALQVSADLAQALAHLAHDPAHALIILGVPVAGMTPLCTELA FT ARLPALGLQAVPLVWTCKGFEEQTAHLPHETVQAALGAMPGLAAGVLSGPSFAREVAQG FT LPVALTVASESSAVRDAVTTALHGAAVRIYASTDVVGVEVGGALKNVIAVACGICDGLA FT LGTNARAALITRGLAEMARFGAALGAQQETFAGLTGLGDLVLTATGELSRNRRVGLEIG FT AGRKLADILASGMTAEGVRCARAARDRARALNIELPITEAVCAVLFEGLSPMTAVSALL FT AREARPESPTP" FT misc_feature complement(302408..303403) FT /note="HMMPfam hit to PF01210, NAD-dependent FT glycerol-3-phosphate dehydrogenase, score 3.7e-107" FT misc_feature complement(302747..302812) FT /note="PS00957 NAD-dependent glycerol-3-phosphate FT dehydrogenase signature." FT misc_feature complement(303353..303424) FT /note="Signal peptide predicted for BPP0291 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.824 between residues 24 and 25" FT CDS complement(303440..303967) FT /transl_table=11 FT /gene="secB" FT /locus_tag="BPP0292" FT /product="protein-export protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0604" FT /protein_id="CAE40033.1" FT /translation="MADQDQTNQQAGSDAPSFNLQRVYLKDLSLEMPNAPHVFLEQEAP FT QVEVSINVGGQRLAETVFESTVTVTVTTRVNDKVLYLVEGTQAGIFELANIPAEQMDPL FT LGIVCPTMLYPYLRANVADAITRTSLPALHLAEVNFQALYEQRLAEMAQQQPDAANGND FT SGIILPPGATRQ" FT misc_feature complement(303509..303967) FT /note="HMMPfam hit to PF02556, Preprotein translocase FT subunit SecB, score 7.7e-33" FT CDS complement(304021..304314) FT /transl_table=11 FT /gene="grxC" FT /locus_tag="BPP0293" FT /product="glutaredoxin 3" FT /note="ortholog of Bordetella pertussis (BX470248) BP0605" FT /protein_id="CAE40034.1" FT /translation="MPAIPSPPGATMQKVVMYSKDYCPYCARAQALLKQRGVADLEIIR FT IDQDPSQRDIMIERTGRRTVPQIFIGETHVGGSDDLQALDRSGGLLPLLNGG" FT misc_feature complement(304099..304275) FT /note="HMMPfam hit to PF00462, Glutaredoxin, score 1.4e-14" FT misc_feature complement(304216..304272) FT /note="PS00194 Thioredoxin family active site." FT CDS complement(304315..304737) FT /transl_table=11 FT /locus_tag="BPP0294" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0606" FT /protein_id="CAE40035.1" FT /translation="MDLLQFLIDKNNVFIVAVAVVSGIMLMLPALRKGRAGAAVGTSEA FT IQMVNQRQAVWVDVRPTEQFQAGHIAQARRLPAADLEKKAGALPKNKPLIVVCEQGRDA FT ARIAARLRSQGFAEVSVLEGGMRAWFAAGLPVTQKG" FT misc_feature complement(304342..304617) FT /note="HMMPfam hit to PF00581, Rhodanese-like domain, score FT 3.2e-19" FT misc_feature complement(304645..304701) FT /note="1 probable transmembrane helix predicted for BPP0294 FT by TMHMM2.0 at aa 12-31" FT CDS 304890..305642 FT /transl_table=11 FT /gene="gpmA" FT /gene_synonym="gpm" FT /locus_tag="BPP0295" FT /product="phosphoglycerate mutase 1" FT /EC_number="5.4.2.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0607" FT /protein_id="CAE40036.1" FT /translation="MYKLVLIRHGESQWNLENRFTGWTDVDLTETGREQARKAGELLKR FT EGYAFDLAYTSVLKRAIRTLWIALDALDAMYTPVGINWRLNERHYGQLQGLNKAETAAK FT YGDEQVLIWRRAYAIAPEPLDLEDPRHPRFDGRYAKIPADQLPATECLKDTVARVLPFW FT NESIAPAIRAGRRVLVAAHGNSLRALIKHLDNVSDDDIVGVNIPTGQPLVYELDEDLKP FT IRHYYLGDAAEIEAAMAAVAAQGKAKKD" FT misc_feature 304893..305567 FT /note="HMMPfam hit to PF00300, Phosphoglycerate mutase FT family, score 7.3e-128" FT misc_feature 304905..304934 FT /note="PS00175 Phosphoglycerate mutase family FT phosphohistidine signature." FT CDS 305646..307211 FT /transl_table=11 FT /locus_tag="BPP0296" FT /product="putative peptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0608" FT /protein_id="CAE40037.1" FT /translation="MRVAAGLLVWAAVAVAPPAAWAVSDLAGRQSEAERQQAALRDRID FT ALQKEIDTREAARKEAADALKESESAISRINLRLRELGETSRQAEAELAGLEKQVVAQQ FT AVLQKRRAELADQLRTQYTSGLSPWTALLSGDDPQQLGRNLGYLDYVSRARAQAVHALR FT EDIARLAALQGQADARRDDIQTLVAETSSQKAALVEQQKTRATLLAKLEGQIAAQRAEA FT GKLGRDDQRLSHLIDDLGSAIARQAEEDARRRAAEEARRKEEEARQAEAARRAEAARQQ FT EAARQAAAAREADARRQAETARQAQQARDAEARDAAAAREQAEAAARQGRGPVALADPD FT AAGLRQVEGGRLVDPQAAPPRETRPAARAEPAEPAPREAAPARTASAAPVGGGNGLRRG FT LPMPVRGTIQGRFGVDRPDGGVWRGLVLRTAEGTPVKVVAPGTVVYAEWLRGFGNLIIV FT DHGQQYLTVYAYNQSLLKRVGDRVAAGDTIATVGATGGQVESGLYFEIRHRGAPVDPAQ FT WLAQ" FT misc_feature 305646..305711 FT /note="Signal peptide predicted for BPP0296 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 22 and 23" FT misc_feature 306951..307199 FT /note="HMMPfam hit to PF01551, Peptidase family M23/M37, FT score 9.2e-25" FT CDS 307196..308683 FT /transl_table=11 FT /gene="ctpA" FT /locus_tag="BPP0297" FT /product="putative carboxy-terminal processing protease FT precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0609" FT /protein_id="CAE40038.1" FT /translation="MAGPIIRHQYREVCMSTRKFRGFGLVAIGAVAGILLSVGVSAVAQ FT RGSPLPLDELRQLSNVFAAIKNNYVEAVDDKTLIGNAISGMVSNLDPHSAYLDADAFRE FT MQTATQGEFGGLGIEVGAEDGFVKVISPIEDTPAARAGIQAGDLIIKIDDTPTKGMSLN FT DAVKLMRGAPKSPITLTIMRADRPQPIVVKIVRDIIKVRSVRSKMLDNNVAYLRIAQFQ FT EKTGPDLARHLKELGAKGAPKSLVLDLRNDPGGLLTSAIGVAGAFLPPDALVVSTDGRT FT PDSRHKYRTTPSEYARGEGNYLNDLPGWVKTVPMVVLVNVGSASASEIVAGALQDHKRA FT KVLGIRTFGKGSVQVILPLSESTAVKLTTSRYFTPSGRSIQATGIEPDYVVADTADGDL FT FRLPREADLQRHLSNQQSPDAEVKSNNDDNTEVAGKAFEFGGKDDFQLQQALNLLAGKP FT VQKGSARAQAKADIKPSEGKTQRITITPTGVEPAKSK" FT misc_feature 307196..307321 FT /note="Signal peptide predicted for BPP0297 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.876) with cleavage site FT probability 0.417 between residues 42 and 43" FT misc_feature 307505..307747 FT /note="HMMPfam hit to PF00595, PDZ domain (Also known as FT DHR or GLGF), score 2e-16" FT CDS 308680..309474 FT /transl_table=11 FT /gene="thiF" FT /locus_tag="BPP0298" FT /product="adenylyltransferase" FT /EC_number="2.7.7.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0610" FT /protein_id="CAE40039.1" FT /translation="MNDQQLLRYARHILLDELGIEGQERFLAARVLIIGAGGLGCPAAL FT YLATAGVGHITLVDDDVVELSNLQRQILHASDSVGRAKAESGRDMLARFNPETQVEARV FT ERLAGAALDTAVAQADVVLDCSDNFATRHAINRACVRHRKPLVSGAAIRFDGQVSVYDL FT RDAQAPCYHCLFPEADDVEELNCATTGVFAPLVGIIGSVQAAEALKLLAGIGQSLAGRL FT LQLDVRSMQWHSVNVPRDPDCAVCGQGGQAAEHARGDAAHCA" FT misc_feature 308755..308823 FT /note="1 probable transmembrane helix predicted for BPP0298 FT by TMHMM2.0 at aa 26-48" FT misc_feature 308758..309168 FT /note="HMMPfam hit to PF00899, ThiF family, score 2e-55" FT CDS 309611..310306 FT /transl_table=11 FT /locus_tag="BPP0299" FT /product="putative GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0209" FT /protein_id="CAE40040.1" FT /translation="MLQPTPTLTDQVAGQLARAIADGAYAVGAKLPTGRALAQQYGVSA FT AVIREATERLRAQGLVQSRQGSGCTVVARMPAGGFQVPAGGLDRAHLARVYELRMELEG FT GAAALAARRRGAADLDRMRQALQALQREPIEPEQGVVHDVGFHVAIATATANPYYLQLL FT QYLNLQLRQAVETARANTRRQGDPVHAVHEEHLAIYRAIERGEPEAARAAAQHHLLGAA FT ARLQLDMNL" FT misc_feature 309644..309823 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.5e-15" FT CDS 310323..311735 FT /transl_table=11 FT /locus_tag="BPP0300" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0208" FT /protein_id="CAE40041.1" FT /translation="MSASEFPQRLTQALGADVVATSPADIEPWLSDWRGIYRGQAQAVV FT RPRTTDEVARCLALCQQAGVPVVPRGGNTGLCGGATPDAAQANVVLSLERMNAIRALDT FT VANTMVAEAGCILGNLRRAAQDANRLLPLSLAAEDSSQIGGNVATNAGGVNVVRYGMAR FT ELVLGLEAVLPNGEVLHGLRTLRKDNTGYDLKQLLIGSEGTLGVITAVALRLFPRADTR FT TVVLAAVESPRQALQLYELLFEQCGARLQAFEYFSGDCLDLVLTHVDGLHEPFAQRYPA FT YVLVELADTIDEAALNALVEEVIGAALERELCLDAAVSASLAQLQTLWRLREEISEAQR FT ADGPHLKHDVSLPIERIPEFMETAEARVRERYPDIRPFIFGHFGDGNLHYNLSRPAGAP FT REWAAEQGDAVTDLVLDEVLRYGGSISAEHGIGQLKRDHFLHSKDPLELRLMREIKRVL FT DPAGIMNPGKLL" FT misc_feature 310443..310934 FT /note="HMMPfam hit to PF01565, FAD binding domain, score FT 9e-60" FT misc_feature 310590..310619 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT misc_feature 310974..311729 FT /note="HMMPfam hit to PF02913, FAD linked oxidases, FT C-terminal domain, score 1.8e-59" FT CDS complement(311834..313747) FT /transl_table=11 FT /gene="thiC" FT /locus_tag="BPP0301" FT /product="thiamine biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0206" FT /protein_id="CAE40042.1" FT /translation="MNANPKFLAATAEVDAAAVAPLPKSRKVYETGSRPDIRVPFREIE FT QADTPTMFGGEKNPPLTVYDTSGPYTDPQASIDIRRGLPALRRAWIEERGDTEVLDGPT FT SDYGKERLTDPKLTAMRFDLQRPPRRARAGANVTQMHYARRGIVTPEMEFIALRENLRR FT EHYLETLRASGPDGEKLAKRLLRQHPGQSFGAALPSAITPEFVREEVARGRAIIPANIN FT HPEIEPMIIGRNFLVKINANIGNSAVSSGIGEEVEKMTWAIRWGGDTVMDLSTGKHIHE FT TREWIIRNSPVPIGTVPIYQALEKVDGKAEELTWEIFRDTLIEQAEQGVDYFTIHAGVR FT LPFIPMTADRMTGIVSRGGSIMAKWCLAHHKESFLYERFEEICEIMKAYDVSFSLGDGL FT RPGSGYDANDEAQFAELKTLGELTQVAWKHDVQVMIEGPGHVPMQMIKENMELQLKHCD FT EAPFYTLGPLTTDIAPGYDHITSGIGAALIGWYGTAMLCYVTPKEHLGLPNKKDVKDGI FT ITYKIAAHAADLAKGHPGAAIRDNALSKARFEFRWDDQFNLGLDPDTAKEFHDETLPKD FT SMKVAHFCSMCGPHFCSMKITQDVRDYAAAQGVSEKDALQQGMQEKAVEFVKKGAEVYH FT RT" FT misc_feature complement(311945..313336) FT /note="HMMPfam hit to PF01964, ThiC family, score 0" FT CDS 314066..314632 FT /transl_table=11 FT /locus_tag="BPP0302" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0205" FT /protein_id="CAE40043.1" FT /translation="MQLTIRKLAYTLAFSTLVLAGCTTASKKTDGQAATPADQASSQQA FT SAASVEFYVAQAKAGDGLMEVKVPDGSLYMQRQPVLTRADLTEAAALVDRQGQNFVGLR FT FTEAGARKLNDISSKNIGNMLALVIDRELVAAPRIAEPLNRGVLAFGVPSAKAASEIAA FT KIRGDAGAPAAGAPAAPAPKPASKP" FT misc_feature 314066..314146 FT /note="Signal peptide predicted for BPP0302 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.482 between residues 27 and 28" FT misc_feature 314099..314131 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 314678..315712 FT /transl_table=11 FT /locus_tag="BPP0303" FT /product="putative restriction endonuclease" FT /note="ortholog of Bordetella pertussis (BX470248) BP0204" FT /protein_id="CAE40044.1" FT /translation="MRGCLFHGRASRGAAVPVARHGVGERVVQCPPMLTTSDPLPHPLL FT HDGVVAAVVRLCADATLDFPARCARLEAAIRACTRDQIIEHLQHGGVISECIGHDSSEE FT KLLAKYSDVLLACALGELGFQARVLAERSDAADVYAECGDQRIVGDGKIFRLSRTALNP FT KDYKVPSLKKWRQGAGYSADYSVLLAPSFQYPLSRSQLYAQAIDNNVLLLSFEQLAFLV FT RHHQPGCDYRPLWEYAGTRAGQDTAAWKEARQYWHGLNQLVARLAGQTEQALRDSYAAR FT RQLLQRQFDDEIAHWDAEAQRIRGLSREQAIAELLVSKKIQARVDLMRGAQRQLTLQLD FT DARA" FT CDS complement(315725..317920) FT /transl_table=11 FT /locus_tag="BPP0304" FT /product="putative DNA methylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0740" FT /protein_id="CAE40045.1" FT /translation="MPPPSRKPAAPRRVRRPAAAPVPRLAPVAGPGRLIDEGLSFYEAS FT LAGKAERYGRGETPHTIHVWWARRPHSAMRALVYAALRAPADKRAAARLSELGATPVPQ FT PGLLAEAAAELAGQYGGAPRVLDMFGGGGTIAFEAALLGCDAHSIDVNELAVFLQQANL FT TYGATLNHGLLKQLAHRHGQAVLQRLARRTETLYPLRGRLASQAEKPIVYLWTYRHACP FT QCGYAYTLSRRPWLSKKAGKALAMVATPGPDGDGVDMVSLPDGEPPPSRWAGRGATACP FT RCSATATPGIADSADHCVAVVTSAGVGKQFALRDDALPAAGLLREQEETLLQRTGLALP FT ATTLPAWSGIVNPALYGMRGHADLFNPRQRLVTLMLLEELLAEHRTLQAAHGADVARFV FT SASLSGLIDQMVDWNCRLSMWIPQNEQVGRAFCGPGVAMLWDYAEVDPVGTGPGNLHAK FT LERICAGIDALALLRRPVQVQRASAAALPYPDDSFDAIVTDPPYYDNIFYSVLADFFYT FT WKKPLIDAIENRPTTPPHAPTANSGHDELVASRQRAGGSARAAHDEYCARLGQALREAA FT RVLKPDGLLAFVYSHASVLGWAALVTAFRAAPFTINSVQPLSIERKARPRALASEAVNT FT CTTFVARRAQAPRPVLARAALQAQFDAILRGGLHRSLLRAGWHEHDAGVALIAQGVALL FT ANCAAVEDADTAALIVDLAGQVSALLPGFSIKQRASL" FT misc_feature complement(316415..316435) FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT CDS complement(317993..318400) FT /transl_table=11 FT /locus_tag="BPP0305" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0741" FT /protein_id="CAE40046.1" FT /translation="MKHARRLRQLSQENLAHISGLSQSAVASYENGLRQSSRSIRKLAI FT ALQVNLDWLETGAGPMELEAYPSGPAAWRPGLMEPGGERAAAPWPFRAVAHARYQALSA FT RDKLLLEQLVRTFIDTCHADYGRAPPWPRER" FT misc_feature complement(318239..318400) FT /note="HMMPfam hit to PF01381, Helix-turn-helix, score FT 9.7e-11" FT CDS complement(318540..318983) FT /transl_table=11 FT /locus_tag="BPP0306" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0744" FT /protein_id="CAE40047.1" FT /translation="MKTFSDRLKHARALRSLTQQDLARASGLSQSAVASYENGQRQSSR FT SVRKLAAALQVNLDWLETGKGSMESLADYSASPAGGAYYLMEPGSGEAPPRALPPWPFT FT TIARAQYEALAARDKRLLEQMLRSFVEACHAEYADGRGRARKH" FT misc_feature complement(318801..318962) FT /note="HMMPfam hit to PF01381, Helix-turn-helix, score FT 2.2e-13" FT CDS 319046..319840 FT /transl_table=11 FT /locus_tag="BPP0307" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0745" FT /protein_id="CAE40048.1" FT /translation="MSTYSIPDDSCAGRILLAFSSVMIEARVQLEAGWRQAGWTVDWCE FT GQHALARLLAMHPPDAVALCGVAGTLSGLVRTTRTSVSAAVVVALLSEGGLPERIAMMR FT AGVDLCWPIEMQVEEVAAMVDAFACRGTASAAAASAWYLSNAGRVLAGPGGVRLPLTVA FT EREFMARLLAAPGHRLARQQLACGFRQRGVQDGAPVSSEVLPSWTANSSHAASYDAAAG FT LSRNVDVMVSRLRAKAQRMGINLPLLSVRRWGYLFIADSDAG" FT CDS complement(320006..321142) FT /transl_table=11 FT /gene="proB" FT /locus_tag="BPP0308" FT /product="glutamate 5-kinase" FT /EC_number="2.7.2.11" FT /note="ortholog of Bordetella pertussis (BX470248) BP0746" FT /protein_id="CAE40049.1" FT /translation="MTAQTSAVSVISAANRLVAKVGSSLVTNEGRGLDRAAVDHWAAQI FT AALHQQGKQVVLVSSGAIAEGMARLGWRKRPSAMHELQAAAAVGQMGLCQAYEAAFAEF FT GLRTAQILLTHEDLADRHRYLNARSTLFALLRLGVVPIVNENDTVVTDEIRFGDNDTLG FT ALVTNLIEADALIILTDQRGLYEADPRCDPAARFVAHAQAGDAALEAMAGGAGSGVGTG FT GMLTKILAAKRAAHSGAHTVIASGRERNVLTRLAQGECIGTELRAVLPVWSARKQWLAD FT HLRLRGRVVLDDGAVHALLHEGKSLLPIGVAEVQGEFERGDVVACVDMHGRECARGLIN FT YSSADTRRILRQPSSQIARILGSMTDPELMHRDNLVVT" FT misc_feature complement(320060..320284) FT /note="HMMPfam hit to PF01472, PUA domain, score 5.6e-11" FT misc_feature complement(320228..320251) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(320408..321100) FT /note="HMMPfam hit to PF00696, Amino acid kinase family, FT score 1.5e-61" FT misc_feature complement(320429..320494) FT /note="PS00902 Glutamate 5-kinase signature." FT CDS complement(321213..322346) FT /transl_table=11 FT /locus_tag="BPP0309" FT /product="probable GTP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0747" FT /protein_id="CAE40050.1" FT /translation="MKFVDEATIEVIAGKGGNGVASFRREKFIPKGGPDGGDGGRGGSI FT YAVADRNINTLIDFRYARLHRAKNGENGRGSDQYGAAAPDITLRVPVGTVVHDADTGEV FT LFDLDRHDQKVTLAAGGAGGMGNIHFKSSTNRAPRQWTPGKEGEQRRLRMELKVLADVG FT LLGLPNAGKSTLISRISNARPKIADYPFTTLHPNLGVVRTSPSRSFVVADIPGLIEGAS FT EGAGLGHLFLRHLARTRVLLHLVDISSPDPEADPIEQAVVDANAIVEELRRYDPELAAK FT PRWLVLNKLDMVPDAQDAQQRFCAEFGWTGPVFAISGLNGEGTQDLIWALQDYLDAEKR FT KDQDAQDQADGTYVFEDPRFDASRGGAAPATPPGGDE" FT misc_feature complement(321468..322301) FT /note="HMMPfam hit to PF01018, GTP1/OBG family, score FT 1.1e-111" FT misc_feature complement(321669..321710) FT /note="PS00905 GTP1/OBG family signature." FT misc_feature complement(321828..321851) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(322496..322756) FT /transl_table=11 FT /gene="rpmA" FT /locus_tag="BPP0310" FT /product="50S ribosomal protein L27" FT /note="ortholog of Bordetella pertussis (BX470248) BP0748" FT /protein_id="CAE40051.1" FT /translation="MAQKKGGGSTRNGRDSESKRLGVKVYGGQSILAGSIIVRQRGTRF FT HPGVNVGVGKDHTLFALANGKVHFSVKGALNKPTVSVVAAE" FT misc_feature complement(322508..322753) FT /note="HMMPfam hit to PF01016, Ribosomal L27 protein, score FT 3.5e-49" FT misc_feature complement(322613..322657) FT /note="PS00831 Ribosomal protein L27 signature." FT CDS complement(322790..323101) FT /transl_table=11 FT /gene="rplU" FT /locus_tag="BPP0311" FT /product="50S ribosomal protein L21" FT /note="ortholog of Bordetella pertussis (BX470248) BP0749" FT /protein_id="CAE40052.1" FT /translation="MYAVIKTGGKQYRVATGEKLKVEQIPADIGQEITLDQVLSVGEGD FT QLKVGTPLVSGAVVKATVLAHGRHDKIKIFKMRRRKHYQKHQGHRQNYTEIRIEAITA" FT misc_feature complement(322814..323101) FT /note="HMMPfam hit to PF00829, Ribosomal prokaryotic L21 FT protein, score 4.4e-43" FT misc_feature complement(322820..322888) FT /note="PS01169 Ribosomal protein L21 signature." FT CDS 323478..324674 FT /transl_table=11 FT /locus_tag="BPP0312" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0750" FT /protein_id="CAE40053.1" FT /translation="MQRPGDAPASSWRLLAMAVPHDDLPEDLERALLVGRVWRPAPVDG FT PCVVAVRGGRLYDLTAVTPTLADLLDRGDRVALARNAAGECLGPAADWLAGRAAGAMLA FT PCDLQPVKAAGATFAASLVERIGAEQAGGDAGRAAAVRERIAGLIGTDLSQLRPGSPEA FT ARLKAVLRARGMWSPYLEVGLGPDAEVFSKAPPMASVGYGSWIGLLPESEWNNPEPEIV FT LAVDARGQAVGATLGNDVNLRDVEARSALLQNRAKDNNGSCAMGPFVRLFDAGYGLGDV FT RRADVRLRIEGQEDGFVLDATSHMREISRDPLELVRQTCGGHHQYPDGFMLFLGTMFSP FT TQDRAAAGRGFTHRPGDLVRIASPRLGALVNRVGLATAIAPWTFGVRALYANLRRRGL" FT CDS 324789..325754 FT /transl_table=11 FT /gene="ispB" FT /gene_synonym="cel" FT /locus_tag="BPP0313" FT /product="octaprenyl-diphosphate synthase" FT /EC_number="2.5.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0751" FT /protein_id="CAE40054.1" FT /translation="MNLPELIAPIADDMKAVDAVIRDRLNSDVVLIRTIGDYIIGAGGK FT RMRPAMVLMVARALGYQGTHHQLLAAVVEFIHTATLLHDDVVDESDLRRGRDTANAVFG FT NAASVLVGDYLYSRSFEMMVEADSMRIMQILSQATTVIAEGEVLQLLNVHDPDVSQERY FT LQVVRYKTAKLFEAAAQVGAVLAGASPEQETAAAAYGRRVGTAFQLVDDVLDYSGDAHA FT LGKNVGDDLREGKPTLPLIRVMETGTPEQRELIREAIKTGQADFAAVAQAIQATDALAH FT ARQAAENEAELARQALSAFPVSLYQKSLLEFCAFAVNRDR" FT misc_feature 324879..325631 FT /note="HMMPfam hit to PF00348, Polyprenyl synthetase, score FT 3.4e-94" FT misc_feature 325029..325073 FT /note="PS00723 Polyprenyl synthetases signature 1." FT misc_feature 325395..325433 FT /note="PS00444 Polyprenyl synthetases signature 2." FT tRNA 325800..325876 FT /note="tRNA Pro anticodon CGG, Cove score 84.17" FT CDS complement(326022..326894) FT /transl_table=11 FT /locus_tag="BPP0314" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0752" FT /protein_id="CAE40055.1" FT /translation="MLTRSMTQAAKDLHTTQPNVSRAIAQLEAHIGLRLFERVAGKLVP FT TREGEVFFRDVEMTFAGLRSLESSAATLRRRGTGHLRISAVPSPALVTVPEAMQLFAER FT FPDVTVSMHVADSITVCQWTAAGYSDIGVASDIFSSPGIGHHVASEALGVCIVPAGHRL FT AGMPRALAPADLAGERFLSLSPNDAMRKEIDKVFAAAGDRRILSCESHFAAAICHMVGL FT GLGVSIANPDVADGFRSLDIAIKPFAPDIRFSTYLVYPSSSPLSLLAQTFCECYEISAG FT RRRARRQAG" FT misc_feature complement(326055..326675) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.6e-36" FT misc_feature complement(326745..326894) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.4e-12" FT misc_feature complement(326790..326882) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS join(327064..327702,327706..329112) FT /pseudo FT /transl_table=11 FT /gene="hyuA" FT /locus_tag="BPP0315" FT /product="putative hydantoin utilization protein A FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0753" FT /db_xref="PSEUDO:CAE40056.1" FT misc_feature join(327073..327702,327706..328716) FT /note="HMMPfam hit to PF01968, Hydantoinase/oxoprolinase, FT score 1.8e-145" FT variation 327703..327705 FT /note="In-frame TAG stop codon in parapertussis; CAG in FT pertussis" FT CDS 329130..331127 FT /transl_table=11 FT /gene="hyuB" FT /locus_tag="BPP0316" FT /product="hydantoin utilization protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP0754" FT /protein_id="CAE40057.1" FT /translation="MNFDKTVLQIFANYCVAAAESMAHTLMRTAHSAFVKETEDFSCTI FT MTPRGQTFASPKTLGATWYPGLDFSGAIDMIDGYEPGDICMTNDAYSGYVATHTPDIMM FT WKPVYYQGEMVCFVGGHIHNTDMGGAVPASLSRTLTEVHQEGIRFPPTKIVRRGVLNEE FT LMRLMELNVRSPEQNRGDLQAQTAMLMTGERRIVEIIERFGLQAFKEGMAAMLDYSEQQ FT ARAIVRAMPDGEYFFAEYADEDSLNGKPLRVAITLRIRGDELEFDFTGSDPQLTSSLNM FT PTGGKERHVLALVGLNYVLYSLNPEILLNAGMLRVARCILPEGSVVNPLAPAAVGMRSL FT TCKVVQYATMGVFSQVVPDRLPASPARGMSIVNVKTTDRDGKTIIAAIGPVGGGAGGDP FT YSDGADASGAIVAFLRNTPVEINETEVPIRITRYGMVPDSGGPGRYRGGLGTCMEFQVY FT TPNSAVTARNRDRSRFASWGVLGGKAGTVSRFLRNPGTAHEEDLGVHDFIHCQPGDVIR FT LEGCGGGGYGSPWERDPARVLHDVRCGYVSVENARGQYGVVIEGGEVSRDATARLRAEL FT AGRDPAVAHYDHGAGRDAFEAVWTLARYERMTHHLAGVAPIWRHFLKIKIFDALEQRLG FT GNVADTRPEIVDEIFAQLLKAYPQLQAASA" FT misc_feature 329136..330749 FT /note="HMMPfam hit to PF02538, Hydantoinase B/oxoprolinase, FT score 2.5e-53" FT misc_feature 329628..329651 FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT CDS 331162..332499 FT /transl_table=11 FT /locus_tag="BPP0317" FT /product="putative amino acid deaminase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0755" FT /protein_id="CAE40058.1" FT /translation="MQQLKQALLRIDTPHTPPAEVDVAIIGAGAAGVATAHELTRLGVR FT VAVIEKGWVAAEQSSRNWGWCRTLGRDIRELELARLSVDLWRSVQADTGVDAGFRETGV FT VFVTDDPSELRTWERWQQAAAARGVPARMLSAREANATHAWGKTPWIGGIRTERDGYAE FT PARAIPLLARHAMDNGAQVIQQCAVNELLVEGGRVAGVQTERGLVRASQVVVAGGVWSS FT LFCRKHKLPLPILQVHSSASRSRQFDTGGAAPARATHFSFRHREDGGLTLAKSGRGTMH FT VVPDLLRYGMKFRSLYRARKANVRLSIGRQFFAQCWDEFRYFHLDRPPYARHRVLDPGP FT DMALVRSAYEDAGAVFPGMGPDLIDQAWGGVIDNTPDGIPVISDVARMPGLYLCTGFSG FT HGFSSSLGAGRCLAQWIARGRSDLSLDAFSYARLVDGRRLQPSILY" FT misc_feature 331222..332424 FT /note="HMMPfam hit to PF01266, FAD dependent FT oxidoreductase, score 0.0022" FT misc_feature 331582..331605 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 332496..333566 FT /transl_table=11 FT /locus_tag="BPP0318" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0756" FT /protein_id="CAE40059.1" FT /translation="MNGRHVPAVLGSHHFCKGNTNMRYNRRAFLGAMAALPAALGAARL FT ASAAPAGEAGYPDRPIKFLVPFSAGSSTDIAARAYAEVTTKAIKGASVVVENRAGAGGN FT VGAAVIARSAPDGYSLLYSAATPYAIAPFVYPDLSYNPIRDFAPIAVTISVPVFVVVAG FT DSDIHTMADLAAHMKAGQQAVSYGSNGVGTSSHIICKLIAMELGYPDVLHVPYRQGSQG FT VMADVIGKRLTYAVDPWSVVGPLVQSGRLRAIATTNGQRLSVAPDIPTLSEIFKKDFAV FT VTWNGLWAPAGTPQGIVDRLGKAFESARENQELVRQFESQGTPLMPAMSVAQTRTFMTG FT EVERWKRFVQASGIKL" FT misc_feature 332496..332639 FT /note="Signal peptide predicted for BPP0318 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.909 between residues 48 and 49" FT misc_feature 332721..333557 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3.6e-75" FT CDS 333621..335102 FT /transl_table=11 FT /gene="gabD" FT /locus_tag="BPP0319" FT /product="succinate-semialdehyde dehydrogenase [NADP+]" FT /EC_number="1.2.1.16" FT /note="ortholog of Bordetella pertussis (BX470248) BP0757" FT /protein_id="CAE40060.1" FT /translation="MSLSVGNAALLPGRNLIGSEWREAALGARFAVADPATGKVIAHVP FT DSGARDAGAAVTAAHQAFADWRRTPAKVRAQIIKRWNALLHENAEDLARLISSEQGKPL FT AEARGEVSYAASYVEWFAEEATRADGDLIPSPAQGRRMFALREPVGVVAAITPWNFPAA FT MIARKIAPALAAGCTVVCKPAEDTPLTSLALTALAQQAGVPPGVLNIVTASRGRAAEVA FT DAWLDDPRVRKITFTGSTPVGKHLARRSADTLKRVSLELGGNAPFIVFDDADLDAAVEG FT LMVSKFRNGGQTCVCPNRIFVQAGVHDAFVRKLAARVEGLVVGPASDPASQIGPMINAR FT AVEKIEHHVADALERGARLAVGGKRIHSARCAGDHYYAPTVLTGVDETMACFREETFGP FT VAPITVFASEADVVAAANATAFGLAAYFYSTDVRRIWRLADALETGIVGVNEGALAAEA FT APFGGVKDSGYGREGSRHGLAEYMQIKYVCQGQLD" FT misc_feature 333678..335093 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 6.3e-196" FT misc_feature 334395..334418 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT misc_feature 334479..334514 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS complement(335118..335732) FT /transl_table=11 FT /gene="cyaC" FT /gene_synonym="HlyC" FT /locus_tag="BPP0320" FT /product="cyclolysin-activating lysine-acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0758" FT /protein_id="CAE40061.1" FT /translation="MPRAHPTRNMPPAPPCTDVMLPSAQAPSLLNPTDDFAALGNIAWL FT WMNSPMHRDWPVHLLARNTLAPIQLGQYILLRCNDVPVAYCSWALMDADTELSYVMAPS FT SLGGNAWNCGDRLWIIDWIAPFSRDDNRALRRALAERHPDSVGRSLRVRRGGDTARVKE FT YRGRALDAAAARAQLDRYHAELIAGLRASNGGYAPRGRGTA" FT misc_feature complement(335163..335642) FT /note="HMMPfam hit to PF02794, RTX toxin acyltransferase FT family, score 1.8e-116" FT CDS 336053..341275 FT /transl_table=11 FT /gene="cyaA" FT /gene_synonym="cya" FT /locus_tag="BPP0321" FT /product="bifunctional hemolysin-adenylate cyclase FT precursor" FT /EC_number="4.6.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0760" FT /protein_id="CAE40062.1" FT /translation="MLDVWFLQKDEVLSATHRLRRCESVQSTTYRQIHMQQSHQAGYAN FT AADRESGIPAAVLDGIKAVAKEKNATLMFRLVNPHSTSLIAEGVATKGLGVHAKSSDWG FT LQAGYIPVNPNLSKLFGRAPEVIARADNDVNSSLAHGHTAVDLTLSKERLDYLRQAGLV FT TGMADGVVASNHAGYEQFEFRVKETSDGRYAVQYRRKGGDDFEAVKVIGNAAGIPLTAD FT IDMFAIMPHLSNFRDSARSSVTSGDSVTDYLARTRRAASEATGGLDRERIDLLWKIARA FT GARSAVGTEARRQFRYDGDMNIGVITDFELEVRNALNRRAHAVGAQDVVQHGTEQNNPF FT PEADEKIFVVSATGESQMLTRGQLKEYIGQQRGEGYVFYENRAYGVAGKSLFDDGLGAA FT PGVPGGRSKSSPDVLETVPASPGLRRPSLGAVERQDSGYDSLDGVGSRSFSLGEVSDMA FT AVEAAELEMTRQVLHAGARQDDAEPGVSGASAHWGQRALQGAQAVAAAQRLVHAIALMT FT QFGRAGSTNTPQEAASLSAAVFGLGEASSAVAETVSGFFRGSSRWAGGFGVAGGAMALG FT GGIAAAVGAGMSLTDDAPAGQKAAVGAEIALQLTGGTVELASSIALALAAARGVTSGLQ FT VAGASAGAAAGALAAALSPMEIYGLVQQSHYADQLDKLAQESSAYGYEGDALLAQLYRD FT KTAAEGAVAGVSAVLSTVGAAVSIAAAASVVGAPVAVVTSLLTGALNGILRGVQQPIIE FT KLANDYARKIDELGGPQAYFEKNLQARHEQLANSDGLRKMLADLQAGWNASSVIGVQTT FT EISKSALELAAITGNADNLKSADVFVDRFIQGERVAGQPVVLDVAAGGIDIASRKGERP FT ALTFITPLAAPGEEQRRRTKTGKSEFTTFVEIVGKQDRWRIRDGAADTTIDLAKVVSQL FT VDANGVLKHSIKLEVIGGDGDDVVLANASRIHYDGGAGTNTVSYAALGRQDSITVSADG FT ERFNVRKQLNNANVYREGVATQKTAYGKRTENVQYRHVELARVGQLVEVDTLEHVQHII FT GGAGNDSITGNAHDNFLAGGAGDDRLDGGAGNDTLVGGEGHNTVVGGAGDDVFLQDLGV FT WSNQLDGGAGVDTVKYNVHQPSEERLERMGDTGIHADLQKGTVEKWPALNLFSVDHVKN FT IENLHGSSLNDSIAGDDRDNELWGDDGNDTIHGRGGDDILRGGLGLDTLYGEDGNDIFL FT QDDETVSDDIDGGAGLDTVDYSAMIHAGKIVAPHEYGFGIEADLSEGWVRKAARRGMGY FT YDSVRSVENVIGTSMKDVLIGDAQANTLMGQGGDDTVRGGDGDDLLFGGDGNDMLYGDA FT GNDTLYGGLGDDTLEGGAGNDWFGQTPAREHDVLRGGAGVDTVDYSQAGAHAGVATGRI FT GLGILADLGAGRVDKLGEAGSSAYDTVSGIENVVGTELADRITGDAQANVLRGAGGADV FT LAGGEGDDVLLGGEGDDQLSGDAGRDRLYGEAGDDWFFQDAANAGNLLDGGDGNDTVDF FT SGPGRGLDAGAKGVFLSLGKGFASLMDEPETSNVLRHIENAVGSVRDDVLIGDAGANVL FT NGLAGNDVLSGGAGDDVLLGDEGSDLLSGDAGNDDLFGGQGDDTYLFGAGYGHDTIYES FT GGGHDTIRINAGADQLWFARQGNDLEIRILGTDDALTVHDWYRDADHRVEAIHAANQAI FT DPAGIEKLVEAMAQYPDPGAAAAAPPAARVPDTLMQSLAVNWR" FT misc_feature 336227..336406 FT /note="HMMPfam hit to PF03497, Anthrax toxin LF subunit, FT score 1e-37" FT misc_feature 337199..337222 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 337244..339016 FT /note="HMMPfam hit to PF02382, RTX N-terminal domain, score FT 5.8e-11" FT misc_feature 339194..339247 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.014" FT misc_feature 339248..339301 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.00066" FT misc_feature 339302..339355 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.0099" FT misc_feature 339617..339670 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.0061" FT misc_feature 339635..339691 FT /note="PS00330 Hemolysin-type calcium-binding region FT signature." FT misc_feature 339671..339724 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.0042" FT misc_feature 339989..340042 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.24" FT misc_feature 340043..340096 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.00015" FT misc_feature 340061..340117 FT /note="PS00330 Hemolysin-type calcium-binding region FT signature." FT misc_feature 340097..340150 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.00024" FT misc_feature 340157..340210 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 56" FT misc_feature 340385..340438 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 4.4" FT misc_feature 340430..340486 FT /note="PS00330 Hemolysin-type calcium-binding region FT signature." FT misc_feature 340439..340492 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.005" FT misc_feature 340493..340546 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.00069" FT misc_feature 340556..340606 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 18" FT misc_feature 340763..340816 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.096" FT misc_feature 340817..340870 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.014" FT misc_feature 340862..340918 FT /note="PS00330 Hemolysin-type calcium-binding region FT signature." FT misc_feature 340871..340924 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.034" FT misc_feature 340961..341014 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.73" FT CDS 341280..343487 FT /transl_table=11 FT /gene="cyaB" FT /locus_tag="BPP0322" FT /product="cyclolysin secretion ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0761" FT /protein_id="CAE40063.1" FT /translation="MDHGPPASRGGAVSLRFFPEVFPMTSPVAQCASVPDSGLLCLVML FT ARYHGLAADPEQLRHEFAEQAFCGETIQLAARRVGLKVRRHRPAPARLPRAPLPAIALD FT RQGGYFVLARFESGADQAVLIQRPGQAPARLGQAEFEALWAGELLLCACAASPTQALAR FT FDFSWFIPALVKHRHLIGEVLLISLVLQFIALLTPLFFQVVMDKVLVNNAMETLNVIAV FT GFLAAILFEALLTGIRTYLFAHTSSKLDVELGARLYAHLLRLPLAYFQARRVGDSVARV FT RELENIRAFLTGNAVTVLLDVVFSVVFIAVMFFYSVKLTLVVLAALPCYFLLSLVLTPV FT LRRRLDVKFNRGAENQAFLVETVSGIDTVKSLAVEPQWQRHWDRQLAGYVVAGLSVANV FT AMLANTGVTLISRLVALGVLWVGATEVVAQRMTVGELVAFNMLSGHVTQPVIRLAQLWN FT DFQQTGVSMQRLGDILNCRTEVAGDKAQLPALRGSIELDRVSFRYRPDAADALSNVSLR FT IAPGEVVGVVGRSGSGKSTLTRLIQRMFVADRGRVLIDGHDIGIVDSASLRRQLGVVLQ FT ESTLFNRSVRDNIALTRPGASMHEVVAAARLAGAHEFICQLPEGYDTMLGENGVGLSGG FT QRQRIGIARALIHRPRVLILDEATSALDYESEHIIQRNMRDICDGRTVIIIAHRLSAVR FT CADRIVVMEGGEVAECGSHETLLAAGGLYARLQALQAGEAG" FT misc_feature 341361..341747 FT /note="HMMPfam hit to PF03412, Peptidase C39 family, score FT 2.2e-26" FT misc_feature 341808..342629 FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region, score 1.1e-58" FT misc_feature join(341826..341894,341937..342005,342153..342221, FT 342234..342302,342441..342509) FT /note="5 probable transmembrane helices predicted for FT BPP0322 by TMHMM2.0 at aa 183-205, 220-242, 292-314, FT 319-341 and 388-410" FT misc_feature 342840..343394 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.7e-64" FT misc_feature 342861..342884 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 343173..343217 FT /note="PS00211 ABC transporters family signature." FT CDS 343484..344806 FT /transl_table=11 FT /gene="cyaD" FT /locus_tag="BPP0323" FT /product="cyclolysin secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0762" FT /protein_id="CAE40064.1" FT /translation="MRRALRELAVRHGRVLAASWRQRHRRPAGWFDPVETEFLPSALSL FT QERPISPTARWLARILMALAAGALVWSVVGKTEIVVHAAGKVVPVGQSKIIAASDTGRV FT ARVLVADNSRVAAGDVLLRLDAGVTDAEERKWRVQAAQARQDEARSRAMIRALDTGRAP FT VLAELPADPGMMAAQSYLDSQYADYQAQLRSIEAAIAAYRRELGLVTQIAHAHRGLRRD FT GDVSQQAYLEKEQARTTLEGRLRQSEAQRAALQTQTRRQAFETLVLARKLAAQAEQEIA FT RTSAQRSRLVLTAPVDGVVQQLVALIEGTAVAATQPLMMVVPSGAGIQVQAQLDSKDIG FT FVRAGASASVKVGAYDYTKYGTLEGTVLHVSPDTVVDDRQQHSYRVTIALAQATLEVDG FT QPQRLKEGMAVQADIRTGSRRLIEYLLSPVARHAGESLGER" FT misc_feature 343757..344713 FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein, score 1.8e-38" FT misc_feature 344693..344761 FT /note="PS00543 HlyD family secretion proteins signature." FT CDS 344808..346232 FT /transl_table=11 FT /gene="cyaE" FT /locus_tag="BPP0324" FT /product="cyclolysin secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0763" FT /protein_id="CAE40065.1" FT /translation="MAAVQVRWRGRGLILALWAGFALSVGDGARARDGLATPPAFEGQA FT APAVSWPCPPPADRLDDLALLEAVDLALCHSPALRQGWARIKARSAEVGLARAPYYPSV FT ALSAGRSAQRRSTGLGEDGVRNNVMAATLAWRLFDSGARSAALRAARAQLDEAAQAYGA FT VLQDKLAEVAGAYYEAATARQALRTAVEDTEIARRSASVAARRARAGLDSHGDVLHAQA FT ALERARLAQAQAEGAQARALAGLAQVLGVDPATPIVLAPGPLAPQRIEDRELAQWLRDA FT RQRHPAIKAAQAGLAAATAQVDVARATDMPTVDLSLGHYRNSSENVSVFAGSSRSVSAS FT LNLRIPLFDGFARRHRIQGARAEVQRQEALLDQARLATGAAVARAYADLRAARASHEAS FT LRWLKAARAAYESDLRRYEAGVGGVAELLRAQSDWLLARQRHVLYAAQLRTRALALLAA FT AGELGRSTINGDPPKE" FT misc_feature 345000..345590 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 2.8e-46" FT misc_feature 345627..346220 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 4.1e-50" FT CDS join(346323..346583,346583..347221) FT /pseudo FT /transl_table=11 FT /gene="cyaX" FT /locus_tag="BPP0325" FT /product="probable LysR-family transcriptional regulator FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0764" FT /db_xref="PSEUDO:CAE40066.1" FT misc_feature 346338..346517 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.2e-16" FT misc_feature 346380..346472 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature join(346575..346583,346583..347214) FT /note="This hit extended beyond the end of the feature by 0 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 5.4e-16" FT variation 346581..346583 FT /note="GCG in parapertussis; GCG(ACCGGGCA) in pertussis" FT CDS 347286..348200 FT /transl_table=11 FT /locus_tag="BPP0326" FT /product="probable extracellular solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0765" FT /protein_id="CAE40067.1" FT /translation="MKRLLNALTAALAIGAAAAGQAHAADLDGTLKKISDTGVITIGHR FT ETSIPFSYYDANQKPVGYSIDICTRIVDAVKTRIKRDDIQVKYLPVTSATRIPLMGNGT FT IDLECASTSNTLDRQKQVAFSVTTFVTGNRFISLKSANLKTIDDLKGKTVASTSGTANI FT RQANEINEARSLGMKVVPVKEHAEGFLMVETGRAAAFIMDDILLYGLAANAKEPDRYQV FT SGDSLSIEPYAIMLRRDDPQFKALVDDTIKSLYASGDFEALYKRWYQSPLPPKGINLNV FT AMSEVLKRVVATPTDSGDPAAYK" FT misc_feature 347286..347357 FT /note="Signal peptide predicted for BPP0326 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT misc_feature 347334..347366 FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT misc_feature 347403..348098 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 1.4e-54" FT CDS 348284..349042 FT /transl_table=11 FT /gene="gltJ" FT /locus_tag="BPP0327" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0766" FT /protein_id="CAE35911.1" FT /translation="MGYQWNWGVLFALSPDGGQTYLQTLLDGLAVTVQTAALAWALALG FT LGIAVGVARTLPYSLVKRLAAVYVEVFRNIPLIVQMFLWYFVLPELLPKALGDWIKQLP FT EGSFYTAALSIGVYMSARIGEQLRAGIEALPPGQRQAGLALGLTLPQLYRHVLLPNALR FT MVLPTMTSDCLNTIKNTSVALTIGLADLTAQAHAMQEYSFQVFEAFLTATVAYLALNLI FT VIVAMRALERWVSIPGQSPRRAQAAKGGRA" FT misc_feature join(348374..348442,348479..348547,348890..348958) FT /note="3 probable transmembrane helices predicted for FT BPP0327 by TMHMM2.0 at aa 31-53, 66-88 and 203-225" FT misc_feature 348671..348892 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 1.5e-12" FT misc_feature 348674..348760 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 349039..349722 FT /transl_table=11 FT /gene="gltK" FT /locus_tag="BPP0328" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0767" FT /protein_id="CAE35912.1" FT /translation="MSSFDYQAIIDALPYLFLTGLRFSLLLTLSSAAGGVVLGALLAIA FT RLYGRRWVAWLAAIYVNLFRSLPLVLVIFLIYFILPYLLQWITQAERPIVLGATGSAFV FT TFILFEAAYFSEIIRAGIGSVGPGQYAAGSALGLTHGQVLRKVILPQAVRNMLPVLLTQ FT VIVIFQETALVYVLSLPDFLGAATKIAQRDNRLVEMYVLVAVVFFVLSFTASRGVRALR FT ARLGA" FT misc_feature join(349105..349173,349234..349302,349315..349383, FT 349507..349575,349633..349692) FT /note="5 probable transmembrane helices predicted for FT BPP0328 by TMHMM2.0 at aa 23-45, 66-88, 93-115, 157-179 and FT 199-218" FT misc_feature 349399..349632 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.5e-14" FT CDS 349739..350482 FT /transl_table=11 FT /gene="gltL" FT /locus_tag="BPP0329" FT /product="glutamate/aspartate transport ATP-binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0768" FT /protein_id="CAE35913.1" FT /translation="MEWLSMIEIERLGKCYGDLPVLKDCSLAVARGEVVVVCGPSGSGK FT STLIKCVNRLEPFESGRIVVDGTDVGAPGTDLPALRARVGMVFQHFELFPHLSVLENVC FT LGQMSVLGRSRAQARAKADALLERVGVAAHRDKHPGQLSGGQQQRVAIARALAMDPVVM FT LFDEPTSALDPEMIGEVLDVMTGLARDGMTMMVVTHEMGFARRVADRIVFMEAGEIIDD FT VASAEFFGSAASPRSREFLSRIISH" FT misc_feature 349832..350389 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 6e-68" FT misc_feature 350162..350206 FT /note="PS00211 ABC transporters family signature." FT CDS 350512..351372 FT /transl_table=11 FT /locus_tag="BPP0330" FT /product="probable aminotransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0769" FT /protein_id="CAE35914.1" FT /translation="MSSLFYINGSFVPAEQARVPAMDRGFLFGDGVYEVMAVIDGMLLE FT FERHAARLARSLGEIGIANPLPRERLLAVCRELVSRAGLREGSVYVQVTRGADARRDFA FT FPSGVEPTVMLFTSEKDLRVNPLAQSGVQVATVPDLRWQRRDIKSVSLLAQVLAKQAAQ FT ARGAFEAVMVDAQGVVTEGSSSSVLLVNAAGAIVVRPLSQDILPGCTRAAVLELARERD FT MAMVERPFTLDECRQAREVILTSALHFVLPVIAVDGEPVADGRPGPVCAALRELYLRHT FT LATAL" FT misc_feature 350533..351345 FT /note="HMMPfam hit to PF01063, Aminotransferase class IV, FT score 1.4e-49" FT CDS complement(351380..351946) FT /transl_table=11 FT /locus_tag="BPP0331" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0770" FT /protein_id="CAE35915.1" FT /translation="MSLIVAARFDTFPDVENAAQRLFSEGFTKQDVHVFYVNSAGEHSR FT YAYGGDRRSDPDSGRADMGAILGAALFGLAFAIAGGFIVAGLNESTIAMLAAAGVGAYI FT GSLFGALWITGHLARKRGEAAPVDHPEVRPAGLLLALHTDPTRETLACQVLRAANGHDV FT EHAEGVWRDNRWQDFDPLKPPQREP" FT misc_feature complement(join(351608..351673,351686..351751)) FT /note="2 probable transmembrane helices predicted for FT BPP0331 by TMHMM2.0 at aa 65-87 and 91-113" FT CDS complement(352035..352991) FT /transl_table=11 FT /locus_tag="BPP0332" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0771" FT /protein_id="CAE35916.1" FT /translation="MKSISKYLAATLASLGLAAGAAATDFPKNEVRLVVNYGAGGNTDV FT ASRALAKGMEKPLGKPVIVENKPGALDTIGPGYVARQAPDGYTVGVVTYSTQAIMPHLM FT KLPYTMDDFDFVAGVGRYRYGITVRADSPYKTLQDLVEAAKKTNGVFFGAPSSPNNLAL FT LELGRLTGGKFEQVSYKSGSETVTALLGGQVDVIVQNPSDVLPHIRDGKLRMIASASPM FT RWPELPEVPTIKESGWPVQIDSWIGLATPRGTPADVLAKLQQAALAAVADPVTRDSFEK FT LGVDPASLKGSEYAELLKQGHEEMGRMIRDANLPRIN" FT misc_feature complement(352050..352856) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 5.8e-64" FT misc_feature complement(352923..352991) FT /note="Signal peptide predicted for BPP0332 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.867 between residues 23 and 24" FT CDS complement(353036..353788) FT /transl_table=11 FT /locus_tag="BPP0333" FT /product="putative acetoacetyl-CoA reductase" FT /EC_number="1.1.1.36" FT /note="ortholog of Bordetella pertussis (BX470248) BP0772" FT /protein_id="CAE35917.1" FT /translation="MSAPRIAVVTGAGRGIGLASARALLAAGNHVVTIDRGAIDTQALF FT GAQHDRVTAASADVQDMPALQALKTRIEAELGPVSILVNNAGVSPKRPDGRSSGILEVS FT EEEWAQVLGINLTCVMRLCQLFLPAMRDQGYGRIVNVASLAGRARSIVAGPSYMASKAG FT VIGLTRAIASEMGPYGITANCVAPGRILTEMAQQAGPEVNQRYAEQIPVRRLGTPEEVG FT ASIAFLCSPDAGFVNGAIIDINGGFYMP" FT misc_feature complement(353048..353782) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 2.1e-69" FT misc_feature complement(353711..353788) FT /note="Signal peptide predicted for BPP0333 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.671) with cleavage site FT probability 0.520 between residues 26 and 27" FT CDS complement(353785..355530) FT /transl_table=11 FT /locus_tag="BPP0334" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0773" FT /protein_id="CAE35918.1" FT /translation="MSTLPKPLSAPGFTLDGTVAHAIVRALARHGVDTLFGQSLPSLLH FT LAAEQAGMRQVAYRTENAGGYMADAYARVSGKPAIVTAQNGPAATLLVAPLAEAMKVSV FT PVIALVQDVNRDQTDRNAFQELDHIALFQPVTKWVRRVTEASRIEDYVDQAFAAACSGR FT PGPVALLLPADLLAAAAPAPALPRNNSLGHFPLDRSVAAPQAIARAASLLAQAQRPVVV FT AGGGVHISDASAAMAALQETAHLPVATTVMGKGAVDERHPLSIGVVGSNMGPNGPTRFQ FT RRLIAEADVVLLVGNRTNQNGTDSWQLYPKNAQYIHIDVDGLEVGRNYEALRLVGDARL FT TLEALTAALAGQDLAARRQARAGVEQAIALGHEKHLEDSAAVRLSDASPIRPERIMHEL FT QQQLDEQSIVVADASYSSIWITHFLTALRPGMRFLTPRGLAGLGWGFPMAMGAKLANPA FT AEVYALVGDGGFGHVWSELETAARMGVKVTLIVINNGILGFQKHAENVKFGAHTSAVAF FT APVDHTAIARACGCTGIRVEDPAQLADALAQARAASGSALIEVICDENAFPPITFFTPD FT AGVQA" FT misc_feature complement(353851..354375) FT /note="HMMPfam hit to PF02775, Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 1.1e-37" FT misc_feature complement(354124..354183) FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT misc_feature complement(354427..354927) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain, score 1e-31" FT misc_feature complement(354979..355479) FT /note="HMMPfam hit to PF02776, Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 1.6e-30" FT CDS 355546..356349 FT /transl_table=11 FT /locus_tag="BPP0335" FT /product="probable GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0774" FT /protein_id="CAE35919.1" FT /translation="MMAAPSRLFSNLYFIKYSGLPWNMATSANRPLFAPIPPSMNMPLA FT PMARENIAAVIYRQLKQLLMMGELKPGEILTLRMLTERLGVSQTPVREALLQLVSERAL FT AMSRGKSVSVPAPTREKLQELRDIRLTLEVLATERATPRISDAEIKTLERLHREMVRYK FT NSEQREGVLKTNYEFHFTLYNASGMPDLVAIIEGLWAQTGPSLTYLYQKPFAHLYDAHP FT HLPLIEALRRHDVEAAVAAIRRDVAGYGAALMERLPAEAGQPAGG" FT misc_feature 355711..355887 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.2e-06" FT CDS complement(356357..356533) FT /transl_table=11 FT /locus_tag="BPP0336" FT /product="hypothetical protein" FT /note="Similar to the C-terminal region of Escherichia coli FT putative dioxygenase beta subunit YeaX or B1803 FT SWALL:YEAX_ECOLI (SWALL:P76254) (321 aa) fasta scores: E(): FT 0.0015, 50% id in 42 aa, and to the C-terminal region of FT Yersinia pestis putative dioxygenase beta subunit Ypo2492 FT SWALL:Q8ZDR4 (EMBL:AJ414152) (321 aa) fasta scores: E(): FT 0.0036, 50% id in 42 aa" FT /protein_id="CAE35920.1" FT /translation="MTLPWREQQAAGAAWGLLDGEIDHRDVVLTRAEREANGKMVSCCS FT RAAGKGRRIVLEL" FT CDS 356683..357705 FT /transl_table=11 FT /locus_tag="BPP0337" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0775" FT /protein_id="CAE35921.1" FT /translation="MSLHPVVCLDRSRRGPGDFPLLSMTAVAMRRGVSSLLGVAGTLAL FT AAPAWAQARQDAASAAHPTWMAAAGNWQVLEGGPGVARVKQRTTGVYAGSEHALGAGLR FT LGGVLGLTRSTARVDDLHAKGHVNSYSLALYGARTVAAGAGDFNAVAGAAYTWHDMDTR FT RHFHWAGTSQPLTADTHGSTFQAFGELGYRWRASARVQIEPFAALAWRDVRTRAFVESG FT GWAAISAGPSRLTQTTTTLGVRGEAGYMLGPAPGKLRLTLGWRRAFGDVDPQATLVLDG FT GNALAATGAPIARDAVLAGLGAELALSRSAAIGLAYIGQYGGGNREHTGSLSLRWLFGA FT " FT CDS complement(357717..358439) FT /transl_table=11 FT /locus_tag="BPP0338" FT /product="probable GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0776" FT /protein_id="CAE35922.1" FT /translation="MTTTMYKTTTEPAEKGRRAFSQVLEKLREMVISYEIKPGERLNEV FT ALAERLGVSRTPVREALHFLARDGFLAEAGRGYVRRPLNLKEMIDLYETREVLEVACLQ FT LAAGRATPQRLDALEAFLAESRAKSPDLPVTELVSLDETFHHMLAEMSGNHELQRILHN FT VNERIRFIRWINMERIGRDKTQAEHAAILAALRAGDIGTAQQNLRSHISKRTEQIKECI FT AQGLARIYLDDDETSPGA" FT misc_feature complement(358203..358373) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 4.6e-09" FT misc_feature complement(358245..358319) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(358584..359591) FT /transl_table=11 FT /locus_tag="BPP0339" FT /product="probable Zinc-binding dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0777" FT /protein_id="CAE35923.1" FT /translation="MKAVVIHGHGGPEVLQYDTAFPDPKAGEGDVILRVKATSINYHDV FT FTRRGMPGIKLDFPVIMGLDVAGEIVEVGPGVQGWKAGDRVLVDPINRAEGGLMGETVH FT GGLAELCKAREHQLIRIPDGVSYEQAAALPVAFGTAYRMMNTIGQVQAGEKVLVLGASG FT GVGVGCVMLAKIAGAQVIACASSEAKMQRLRELGADHVINYADTDFAKAIYELYGKPHR FT RKFDGGVDVAVNFTGGNTWVKSMRCLRRGGRLLTCGATAGYDPQTDLRFIWTFELNIRG FT SNGWMREDLDALLGLVQSGKMQVPIDRVLSLQDAGEALRLIEDREVMGKVVVTP" FT misc_feature complement(358590..359567) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenase, FT score 3.8e-84" FT CDS complement(359632..361182) FT /transl_table=11 FT /locus_tag="BPP0340" FT /product="putative acetyl-CoA synthetase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0778" FT /protein_id="CAE35924.1" FT /translation="MTAATANLGALFSPARDPAAIALIDLGGESGPREYTYAELDAQAD FT GVARGLRARGLPAGARAAILSANRMEFLAAYLGIMRAGLIAVPVNYRLPPDSIDFILRD FT SGAALVFCDGPRRDAYTVALPSVEFGAGGAGGYARFLDPGPCEAARPADDQPALFLYTS FT GSTGRPKGVKISHAGYLWTVRQRTASTDYGGHCFLVAAPLYHMNALNTIKLALAGQGRL FT VLMPQFSPAGYLDAIERYRCTWLTAIPTMIALLARETGALAGADLASVTMVRLGSEPLT FT QRIADSARAMFPRAAFGNGYGATETGALVFGPHPQGLAQPVLSVGYPHPAVQLRLADGA FT DLDAATGVLQVRSPALMLGYHGLPEQTAAAMTHDGFYITGDVMRRNEHGFHYFIGRADD FT MFVCGGENIYPGEVEKMLERHPAIVQACIVPLADPLKGMKPVALVVSRPDATLSEQEVK FT DYALAHGPAYQHPRAVRFVDEMPISSTGKVNRKAAALLAAELIAAVPPLTQGGHALRR" FT misc_feature complement(359899..361077) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 1.1e-107" FT misc_feature complement(360673..360708) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(361179..362297) FT /transl_table=11 FT /locus_tag="BPP0341" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0779" FT /protein_id="CAE35925.1" FT /translation="MRSKENTMEFHQCYALDYHRARDKFRAAAAAAGASLTQYLHEGQT FT GPDGRPLHTDVARFGRADAPRRLLAISGTHGLEGFFGSAAQIGWMLGDGPASLDPDVAV FT IMVHAINPWGFAHLSRTTENNVDLNRNFIDHGQPHPANPDYAILHPQLLREDWSSAAVA FT AAQQAMEDFTARHGEDRLYDTLARGQYSHPDGLNYGGTAREWSNLTLERIVRDHLAGAR FT KVALIDWHTGIGGYGEPFFLCFNEEGGPLHELAARWWGRDRIVGQRPHGKARPNYQGLL FT FHGVQALLGDVPMCGAVIEFGTRGWHMRRLLRLDLWLKFKADPASERYAMLRADLLDSF FT CPYDQVWREGTLRHAQEITRQAVAGLAAWSEA" FT CDS complement(362294..363076) FT /transl_table=11 FT /locus_tag="BPP0342" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0780" FT /protein_id="CAE35926.1" FT /translation="MSKSVKSFLYPLITGVVLVILWFASIRIFSVPNYLLPTPEAVLNA FT LRIGYVEGQYWPHFLFTLQSTVYGYLIGCGMALVVGTVLAESETFEQFIYPYIIALQST FT PKVAIAPLLLVWFGFGMASKVVMVALMSFFPMFINTVVGIRQANPAMLDLMKAFKASRS FT HVFFHVKLPAASGHIFAGLQISVVLSLIGAVVSEFISSSLGLGYLIQSASVNMDVATMF FT ACLFSLVAIGLTGTNLIRFLHRKLVFWEQSTTATVQPE" FT misc_feature complement(join(362354..362419,362450..362515, FT 362645..362701,362732..362797,362834..362899, FT 362990..363055)) FT /note="6 probable transmembrane helices predicted for FT BPP0342 by TMHMM2.0 at aa 7-29, 59-81, 93-115, 125-144, FT 187-209 and 219-241" FT CDS complement(363088..363951) FT /transl_table=11 FT /locus_tag="BPP0343" FT /product="probable ABC transporter, ATP-binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP0781" FT /protein_id="CAE35927.1" FT /translation="MTSLNLSMIEGGRPASRAAAATLDAVAGAGDGAALLTASNLSVVY FT RTSKGPITAVDNLSLQLGAGEFVSVLGPSGCGKSTLIKVFSGLLKPSGGKALLNGTPID FT EPRGDVGIVFQQPTLLPWKTVLDNVLVPIRALGMNVADGRAKAMELLRLVGLEKFASNY FT PSELSGGMQQRVGIARGLIHDPALLLMDEPFSALDTMTRDRMSIELQRIWMATRKSALF FT ITHSIAEAVFLSDRIVVMSARPGRIIREVTVNLPRPRTLATLTDPEFTRLCGELRELFD FT QLVQFD" FT misc_feature complement(363223..363759) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.2e-52" FT misc_feature complement(363409..363453) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(363715..363738) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(363970..365067) FT /transl_table=11 FT /locus_tag="BPP0344" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0782" FT /protein_id="CAE35928.1" FT /translation="MIGIEHLKRHARRGILAGAAAMALAAAGGAANAAEKVTFAYGTNI FT SLSNAPTLMAIGMGYFKEAGLDVQATFFQGAAVMLPQVTQKHITFGWITPDPLVISSQP FT GRDALPVKMFYNGIYLSPFEVVVTKNSPARSLADLKGKKIGVGAMSWGNLAVTKAMMKK FT LGLELQRDYEFVPVGVGATAFRALADDKVQALNLFDTFHVQMEQMGADLRRLPMDQSYR FT ELFSSGWIAHQDTLRERPKLVVAFARAAAKGVVACNANPQACVQNFWKLYPATKPADGT FT EEKKLADAVQILKVRLATMLPEQGPQQMGYYTEQSWHDYVDVLHEGGQLSTKDVDVKPL FT YTNQFVKDINDFDAAAVVSAAKQLK" FT misc_feature complement(364969..365067) FT /note="Signal peptide predicted for BPP0344 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.992 between residues 33 and 34" FT CDS complement(365136..366062) FT /transl_table=11 FT /locus_tag="BPP0345" FT /product="putative dioxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0783" FT /protein_id="CAE35929.1" FT /translation="MTRTEPDQPMGAAPAGLDHVGLYAHDMDAAAAMYQRLGFTLTPLS FT QHSGTHAVTREVVKAGIANRCAMLGHGYIELVAVVDPALDLRGIPEGLARYAGMHIVAF FT DTPDPGQRIAALREAGFAAEPGVLQRYIDTADGPRLARFSQVRTPRQAMPEGLILTLRH FT ETPELLWQARYMGHPNGARALAAAIVAVEDVDAAAARYARYLGVPAERRGGEAWFTLRS FT GRLALVDQAALAARLPGSTAPALPFPAALAVEVDDLSRTAAVLDDNQVAYRRAGGQLTV FT AARDAGGAAVIFCANAEAAFAGAPEEP" FT CDS complement(join(366097..366912,366916..367755)) FT /pseudo FT /transl_table=11 FT /gene="ilvB" FT /locus_tag="BPP0346" FT /product="putative acetolactate synthase large subunit FT (pseudogene)" FT /EC_number="2.2.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0784" FT /db_xref="PSEUDO:CAE35930.1" FT misc_feature complement(366151..366675) FT /note="HMMPfam hit to PF02775, Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 1.3e-38" FT misc_feature complement(366424..366483) FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT misc_feature complement(join(366727..366912,366916..367215)) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain, score 3.2e-23" FT misc_feature complement(367267..367752) FT /note="HMMPfam hit to PF02776, Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 4e-36" FT CDS complement(367955..368848) FT /transl_table=11 FT /locus_tag="BPP0347" FT /product="putative mechanosensitive channel protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0785" FT /protein_id="CAE35931.1" FT /translation="MLCSLSVVVYVFHAYLFQRYLPGSNPESFRRFSAAAAFYAFAWLL FT ARMAAAALTRKAKKKRKTPRLLRELVSATLFAIATVATIGVFLGQSAGGILASSGLIIA FT ILGFAIRNVLADVLSGIAIGVEAPYRIGDWVGFDATIRGRVTEIGWRTTRILTPNDTYM FT ILPNSQISRQMLTNYSAPRKQYQGELEIVLSHDISISDGKQLLFDAALSTSPAESLAPG FT QKPRVRATAYTAEGVTYKIKYWVPQFSDSTDCRDAILVAIDDAIRSQGLALPVAAPPRP FT QAIALRQPDTPDNPGA" FT misc_feature complement(368027..368647) FT /note="HMMPfam hit to PF00924, Mechanosensitive ion FT channel, score 4.3e-29" FT misc_feature complement(join(368507..368572,368585..368650, FT 368690..368755,368786..368842)) FT /note="4 probable transmembrane helices predicted for FT BPP0347 by TMHMM2.0 at aa 2-21, 31-53, 66-88 and 92-114" FT CDS complement(368996..369907) FT /transl_table=11 FT /locus_tag="BPP0348" FT /product="LysR family regulatory protein" FT /note="Similar to Escherichia coli nitrogen assimilation FT regulatory protein Nac SWALL:NAC_ECOLI (SWALL:Q47005) (305 FT aa) fasta scores: E(): 1.1e-32, 40.46% id in 299 aa, and to FT Ralstonia solanacearum probable nitrogen assimilation FT regulatory transcription regulator protein RSP0942 FT SWALL:Q8XRB6 (EMBL:AL646081) (313 aa) fasta scores: E(): FT 5.3e-37, 43.04% id in 309 aa" FT /protein_id="CAE35932.1" FT /translation="MDIRGLRYFVAIVDCGSLTKAAEQVRVAQPALSQQLAALEAELEV FT PLLLRSSKGVAPTDAGSALYRHARAILKQLEATRDEVRTAGAMVSGTVAIGLPTTVAAL FT VAMPLLRAVRARHPDIRLQLFESMSGYIGELLANWRLDFAILFRDADSRIVELEPLAQE FT TLYLIGQCGASLAPDGQDSVALQALGSLPLALPSGAQGLRLLIERSFAQAGIALDVVAE FT LDSLPCLLGAAQEGLACTILPASVLAATGMQTPCWRITPEIRRTLSLCWPRSGPRTPAA FT QAVEAILREIVAERLGEDGTLG" FT misc_feature complement(369029..369652) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 3.4e-33" FT misc_feature complement(369722..369901) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.9e-23" FT misc_feature complement(369767..369859) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 370025..371206 FT /transl_table=11 FT /locus_tag="BPP0349" FT /product="CAIB/BAIF family protein" FT /note="Similar to Brucella melitensis alpha-methylacyl-CoA FT racemase BMEII1076 SWALL:Q8YB25 (EMBL:AE009740) (405 aa) FT fasta scores: E(): 2.5e-101, 68.71% id in 390 aa, and to FT Pseudomonas aeruginosa hypothetical protein PA0882 FT SWALL:Q9I563 (EMBL:AE004522) (400 aa) fasta scores: E(): FT 5.8e-101, 68.62% id in 392 aa" FT /protein_id="CAE35933.1" FT /translation="MAMTLPLSGLTVVSLEQAIAAPFATRQLADLGARVIKIERPGVGD FT FARAYDGRVNGLSSHFVWTNRSKESLTLDVKHPEAAPVLDALLAGADVLVQNLAPGASA FT RLGLDYATLAGRYPRLIVCDISGYGDSGPYRDRKAYDLLVQSEAGFLSVTGSADEPAKA FT GCSISDIAAGMYAYSNILAALIERGITGKGKRIDLSMLEATAEWMGFPLYYSYDGAPPP FT PRSGAAHATIYPYGPFPAGDGRTVMLGLQNEREWAAFCATVLRQPGLATDARFASNALR FT NEHREALRALIVECFAALDSATLMERLDEARIANARVNTMHDLWQHPQLRARERWRDVD FT TPAGPIPALLPPGQEAGSRMDPIPAVGQHTDSILAGLGFGADRIAALREAKAV" FT misc_feature 370025..370084 FT /note="Signal peptide predicted for BPP0349 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.720) with cleavage site FT probability 0.668 between residues 20 and 21" FT misc_feature 370235..370801 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 6.4e-50" FT CDS 371203..372033 FT /transl_table=11 FT /locus_tag="BPP0350" FT /product="conserved hypothetical protein" FT /note="Similar to Klebsiella pneumoniae citrate lyase beta FT chain CitE SWALL:CILB_KLEPN (SWALL:P17725) (289 aa) fasta FT scores: E(): 1.3e-10, 30.63% id in 284 aa, and to FT Pseudomonas aeruginosa probable acyl-CoA lyase beta chain FT PA0883 SWALL:Q9I562 (EMBL:AE004522) (275 aa) fasta scores: FT E(): 4.7e-32, 45.75% id in 271 aa" FT /protein_id="CAE35934.1" FT /translation="MSAPAQTYLFVPGSRPERIAKAIDAGPDAVIVDLEDAVAPADKPA FT ALDSLRAGWDGHAARAQAQRVTLLVRINAADTPWHAADLAACQALGVAHVVVPKAADAD FT ALARVRAAVPGALLYPLIESAEGYAHLPAVAGAEGVARLMFGSVDLMLDLGIGEDDQPL FT HYFRSRLVLASRLAGLPAPIDGVCVDLRDPEALAAQVLRARQFGFGAKLLIHPGQIAPV FT RRGFAPSEAQRAWARRVVDAAAAADGAAVAVDGKMVDRPVLMQAQAILACPPPA" FT CDS complement(372046..372837) FT /transl_table=11 FT /locus_tag="BPP0351" FT /product="GntR family regulatory protein" FT /note="Weakly similar to Escherichia coli fatty acyl FT responsive regulator FarR SWALL:FARR_ECOLI (SWALL:P13669) FT (240 aa) fasta scores: E(): 1.2e-06, 26.74% id in 243 aa, FT and to Streptomyces coelicolor putative transcriptional FT regulator SCAH10.21 SWALL:Q9RKT6 (EMBL:AL132824) (245 aa) FT fasta scores: E(): 3.2e-09, 29.41% id in 238 aa" FT /protein_id="CAE35935.1" FT /translation="MTARGGWRPRPGPPAPAFPEPALRYTELANTLVKRITEGQYEIGD FT QLPNELALAAQFQSSRSTVRAALDIVEGLGLVTRKRRSGTVVCSRTTNNQYTKSVHTIE FT DLVNYASHTERQILEVSPVVADEALAQALECKPGTTWLRVRMLRVEKDAAHTPLCWNDA FT YMLPDVGQRIVGKIPNGSGLLCRIIENEAGIAVADIKQSIGATAIEGEMASRLGVAPGT FT PGLEITRLYVDRANTPFLITVNTYSAHKFRFTFWMHRSDSH" FT misc_feature complement(372577..372756) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.1e-14" FT CDS complement(372839..373402) FT /transl_table=11 FT /locus_tag="BPP0352" FT /product="conserved hypothetical protein" FT /note="Similar to Aquifex aeolicus C-terminal fumarate FT hydratase, class I AQ_1679 SWALL:O67590 (EMBL:AE000750) FT (185 aa) fasta scores: E(): 1.6e-32, 49.16% id in 179 aa, FT and to the C-terminal region of Escherichia coli anaerobic FT fumarate hydratase class I, FumB SWALL:FUMB_ECOLI FT (SWALL:P14407) (548 aa) fasta scores: E(): 1.4e-13, 30.72% FT id in 179 aa" FT /protein_id="CAE35936.1" FT /translation="MTTHYLDTPLTDDAIRQLQAGDEVFLSGVIYMARDAAHKRFIDTL FT ARGEPLPVDLTGHVVFYGGPGPAKPGHVIGVVAPTSAYRMDPYATVLFDHGVKAAIGKG FT NRGPAIRESCRENVAVCFSAIGGISAMLFSCIKSATLVCYEDLKTEAVQRLEIENFPLL FT VTNDAHGRDMYDEEVKKYRQLLNA" FT CDS complement(373412..374254) FT /transl_table=11 FT /locus_tag="BPP0353" FT /product="putative dehydratase" FT /note="Similar to Escherichia coli L(+)-tartrate FT dehydratase TtdA SWALL:TTDA_ECOLI (SWALL:P05847) (303 aa) FT fasta scores: E(): 1.9e-24, 32.61% id in 279 aa, and to FT Aquifex aeolicus fumarate hydratase AQ_1780 SWALL:O67654 FT (EMBL:AE000756) (281 aa) fasta scores: E(): 6.9e-54, 49.11% FT id in 281 aa" FT /protein_id="CAE35937.1" FT /translation="MREIHVNEITDTVARLCIDACHLLPDDLVRSFHQAAEREVSPLGK FT SVLLKLIDNDRIARENQVSYCHDTGLTIVYADVGQDVHIVGGDYGQAVQAGVRKGYAEG FT FMRKSVVSDPLLRVNSNDNTPAVVHTEIVPGADIRFTVVPKGGGSENWSTMKFLLPGEG FT VAGVKQFVLAAIEAAGGAACPPLTVGVGIGGSFDKVTAIAKQAILRDIGQHHPEPHIAQ FT LETELLEAINKTGIGPQGYGGMTTALWVAVETYACHITALPVAVNIQCHAGRRQTAVI" FT CDS complement(374320..375294) FT /transl_table=11 FT /locus_tag="BPP0354" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 7.1e-33, 36.11% id in 324 aa, and to Comamonas FT testosteroni hypothetical protein Orf4 SWALL:Q9S155 FT (EMBL:AB024335) (325 aa) fasta scores: E(): 6.2e-34, 36.11% FT id in 324 aa" FT /protein_id="CAE35938.1" FT /translation="MFKQALAAVAVTAALCTGGAAHAAYPGSAVTIVVPFAAGQTGDII FT ARLVGKELASRLGQAFIVENKPGGGGRIGTAFVAKAKADGHTLLLTSTGPYAIAPALYP FT KTTHYDPVRDFTAVAELASTPQIIAVSNDLGVTSLAGLVQAAKAGELFYGSAGLGSTQH FT LTMELLKQKLDFPMTHAPFKGSAESKLKVMSGMLAATSDSLPAIYGNIQAGQLKALAVV FT DDQRSAYLPDVPTLAEAGFQNLSTVAFFGLVAPQGTPQEVVDTLNKELLQAVRTPEFVE FT KMRAQALTPPQARTPEQFNAYLHDQVARWKGIVEDAHVAVEGY" FT misc_feature complement(374338..375162) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.9e-88" FT misc_feature complement(375226..375294) FT /note="Signal peptide predicted for BPP0354 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 23 and 24" FT CDS complement(375549..376520) FT /transl_table=11 FT /locus_tag="BPP0355" FT /product="putative exported protein" FT /note="Similar to Alcaligenes eutrophus hypothetical FT protein SWALL:YGB7_ALCEU (SWALL:Q44018) (327 aa) fasta FT scores: E(): 1.2e-32, 37.74% id in 310 aa, and to Comamonas FT testosteroni hypothetical protein OrfJ SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 2e-32, 36.59% FT id in 317 aa" FT /protein_id="CAE35939.1" FT /translation="MMKRLAHTLAALAATLAVASPAAAAQWPENPLQMIVQFPPGSTTD FT AVARDIAMRLEKQIGQSVVVVNKPGAGGIVGVSNIARAKPDGYTLGTVNYPTLTIIPHQ FT QAVPYDPLKDFSHLAVVGPYDYGIFVRADAPWKTFKELVDYGKANPGKLSFGTLGAGTT FT NELVMNRLGRDLGMQWQFIPYKGDNESVTALIGGQIDVVNASANATLPQVRAGKLRMLV FT SSGPGRWSALPDVPALRETGLVDYAQESYFSLAAPAGIPAVAQEKLAQALKTVLTDPEV FT IESFQQKYGQAVRYEDGASYAKTVARDYQRWSAGSPANVAKH" FT misc_feature complement(375573..376382) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 4.6e-70" FT misc_feature complement(376449..376520) FT /note="Signal peptide predicted for BPP0355 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.750 between residues 24 and 25" FT CDS complement(376571..378475) FT /transl_table=11 FT /locus_tag="BPP0356" FT /product="hypothetical protein" FT /note="No significant database matches to the full length FT CDS. N-terminal region is weakly similar to Rhizobium loti FT hypothetical protein MLL1717 SWALL:Q98JZ0 (EMBL:AP002998) FT (292 aa) fasta scores: E(): 3.4e-11, 29.8% id in 255 aa, FT and to Homo sapiens tartrate-resistant acid phosphatase FT type 5 precursor ACP5 SWALL:PPA5_HUMAN (SWALL:P13686) (323 FT aa) fasta scores: E(): 1.3, 24.43% id in 311 aa" FT /protein_id="CAE35940.1" FT /translation="MNLINMSNFTSGRRLLRFAVVADSHLNPVNAGNTSPWQTNHLANP FT RNEVVVAAINRIAPAFTVHVGDVVHPLPHSTDYDGAADFATTLYRGLQAPFYIAPGNHD FT IGDKHLPGNPAACISADSCGKYEQHFGAQWQAFTEGNVCFIIINACLLGSGLPQEDAQW FT QFLQSRLAEEKAAGRRLFLFTHYPPFVTAPDEENHYDNIDHGPRRRLLELTASAGVEAL FT FAGHVHTFFLNRHAGMWSYALPSSTNFRQDYAELFRVEPGEELGRNDLGKFGFFVVDIH FT EHGHIARFVRTYGSTDPAQGEEIALQVEGDVREHAAGTVAADFRHDWARVEALPYNPPL FT DAFVRKRVRNDYYILNLWDAGMRGVRLPIHDIADEQAFERVRLLGELGHRCLVFGTAVP FT DAHLLERLASLGPALEGYEWIGPDSAIAAHAAGQFARRGIRLFVAPVMQPPSSHSQGQY FT DHNMTSGIALGELDHLARFRPQRADASAPGVVVRIAGDEPVLESVRQAVEQAASHGVAI FT ALHINLANRKSALVNDDDQAQAARVAEAAIAKAAYPDVPMTLDTFMDIDRGYFARHGLV FT DRRNNPRPAATVLRRLSERLRGHAVRIGAITREPAQSTVRIALGDQTLDVRIGRDISF" FT misc_feature complement(377786..378430) FT /note="HMMPfam hit to PF00149, Calcineurin-like FT phosphoesterase, score 4.8e-13" FT CDS 378544..379353 FT /transl_table=11 FT /locus_tag="BPP0357" FT /product="transcriptional regulator" FT /note="Similar to Pectobacterium carotovorum subsp. FT carotovorum repressor of pathogenesis KdgR SWALL:Q9RB25 FT (EMBL:AF135395) (263 aa) fasta scores: E(): 2.8e-08, 24.12% FT id in 257 aa, and to Bordetella pertussis hypothetical FT protein SWALL:O30445 (EMBL:AF006000) (260 aa) fasta scores: FT E(): 1e-28, 38% id in 250 aa" FT /protein_id="CAE35941.1" FT /translation="MANLPFDLVPRAELEHEPRFASTLANGLDILRCFSAAQPTLGNKE FT ISEALGLSRPTVARLTFTLVTLGYLRRDDASKRYSLAPGVLSLIYPLLLQLTVRRVAEH FT DLAALSEKAGGPVSIGTRDRLQVVYVDTIHDRGNNGAKPDIGSSRPLLHTAMGRALLYT FT FDAAERELLMPLLLEQEPQQGDAARAALEEAFAQIARTGFCTSYGSWRPELAGLAAPLR FT YRAGDLPFAINLTLPIDAVKDGRAEQEFGPYLARLAQSIDRRLGVDV" FT misc_feature 378778..379335 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 5e-09" FT CDS complement(379391..380029) FT /transl_table=11 FT /gene="scoB" FT /locus_tag="BPP0358" FT /product="putative succinyl-CoA:3-ketoacid-coenzyme A FT transferase subunit B protein" FT /EC_number="2.8.3.5" FT /note="Similar to Helicobacter pylori FT succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B FT ScoB SWALL:SCOB_HELPY (SWALL:P56007) (207 aa) fasta scores: FT E(): 4.7e-43, 61.3% id in 199 aa, and to Ralstonia FT solanacearum probable succinyl-CoA:3-ketoacid-coenzyme A FT transferase subunit B protein RSC1571 SWALL:Q8XZ35 FT (EMBL:AL646065) (212 aa) fasta scores: E(): 2.3e-53, 70.53% FT id in 207 aa" FT /protein_id="CAE35942.1" FT /translation="MAWTHEQMAARAARELHDGDYVNLGIGLPTKVVQYVPQGMQVWLQ FT SENGLIGIGPPPYEDEIDADLIDAAKQTITTVPGASICSSSMSFAMIRGGHMDLTILGA FT MQVSACGDLANWMIPGKMVKGMGGAMDLVGGVRRVIVLMEHNTRDGGLKILEQCSLPLT FT GKRVVHQIITDLAVMDVTADGLVVTELAPGVSAEMVQEKTEPRLAFACH" FT misc_feature complement(379421..380020) FT /note="HMMPfam hit to PF01144, Coenzyme A transferase, FT score 8.8e-58" FT misc_feature complement(379874..379900) FT /note="PS01274 CoA transferases signature 2." FT CDS complement(380043..380747) FT /transl_table=11 FT /gene="scoA" FT /locus_tag="BPP0359" FT /product="putative succinyl-CoA:3-ketoacid-coenzyme A FT transferase subunit A" FT /EC_number="2.8.3.5" FT /note="Similar to Helicobacter pylori FT succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A FT ScoA SWALL:SCOA_HELPY (SWALL:P56006) (232 aa) fasta scores: FT E(): 3.4e-48, 56.71% id in 231 aa, and to Ralstonia FT solanacearum probable fesuccinyl-CoA:3-ketoacid-coenzyme A FT transferase subunit A protein RSC1570 SWALL:Q8XZ36 FT (EMBL:AL646065) (232 aa) fasta scores: E(): 1.8e-62, 71.12% FT id in 232 aa" FT /protein_id="CAE35943.1" FT /translation="MTKIFEDAAAALSGVIKDGQTIAVGGFGLCGIPSTLIEGLRDSGV FT ANLTCISNNAGVDDFGLGLLLQTRQIKRMIASYVGENKEFERQYLNGELELEFNPQGTL FT VERLRAGGAGIAAFFTRTGVGTVVEENKETRDFGGDTYVMEQALKADVSLVKAQRADTS FT GNLVFSRTARNFNPEDAMAGGVTIAEVEELVEAGEMDPDAVHLPGIFVDRIIVVPNPEK FT RIERKSFRTRGQ" FT misc_feature complement(380085..380738) FT /note="HMMPfam hit to PF01144, Coenzyme A transferase, FT score 2.6e-109" FT misc_feature complement(380649..380696) FT /note="PS01273 CoA transferases signature 1." FT CDS complement(380894..381838) FT /transl_table=11 FT /locus_tag="BPP0360" FT /product="LysR family regulatory protein" FT /note="Similar to Pseudomonas aeruginosa transcriptional FT regulator PtxR SWALL:PTXR_PSEAE (SWALL:P72131) (312 aa) FT fasta scores: E(): 1.6e-12, 25.76% id in 295 aa, and to FT Brucella melitensis LysR family transcriptional regulatory FT protein BMEI0218 SWALL:Q8YJ68 (EMBL:AE009464) (308 aa) FT fasta scores: E(): 1.7e-31, 36.17% id in 293 aa" FT /protein_id="CAE35944.1" FT /translation="MHPYCALMHNWRMDKYPEWNDLKVFLTVARLGTISLAGERLGIEH FT STVSRRIDRLEAKLKVVLFDRRRSGYSLTDAGNALIPHAEKMESVLLAAVEESLGLADF FT IEGTVRVGTPEAFGINVLAPSLARLRQTHPGLNVELMAQPQFPSLVTREVEILVTLEPP FT AMGRYKVAKLAQIHYFLYCSAGYKKSHPPIRQLSDVAQHEFVDYIHDGSVSERYRVLEE FT LVPQPRRSFTTTSVLAQRAAAVAGMGLVLLTPYVANAGQADLVEVFPGRPLITRSLWIA FT APEDLLRIKRYQSVWNFIRQLMAQHPDLFHPPS" FT misc_feature complement(380927..381535) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 5e-29" FT misc_feature complement(381605..381784) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 5.2e-16" FT misc_feature complement(381650..381742) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 381992..382807 FT /transl_table=11 FT /locus_tag="BPP0361" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydratase Crt SWALL:CRT_CLOAB FT (SWALL:P52046) (261 aa) fasta scores: E(): 1e-17, 32.38% id FT in 247 aa, and to Ralstonia solanacearum probable enoyl-CoA FT hydratase protein RSC0304 SWALL:Q8Y2N1 (EMBL:AL646058) (272 FT aa) fasta scores: E(): 2.6e-65, 60.75% id in 265 aa" FT /protein_id="CAE35945.1" FT /translation="MTGTERYQNYQVIEFDRPAPRVLRLTLNRPERMNALDSRGHAELA FT DVWRDIDADPDVSAVVLRGAGRAFSAGGDFSMLEEMNEDFKVRARVWREARDLVYNIVN FT CSKPIVSAIRGPAVGAGLVAALLADISVAAKSARIVDGHTKLGVAAGDHAAIVWPLLCG FT MAKAKYHLMLCEPLNGEQAEALGLVSLCVEDDALEDKALEIAQRLAAGAPAALRWTKYA FT LNNWLRQAGPIFDTSLALEFMGFGSPEAKEGVSALMEKRAPAFDQDIAI" FT misc_feature 382058..382570 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 3.6e-35" FT misc_feature 382319..382381 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 382822..383712 FT /transl_table=11 FT /locus_tag="BPP0362" FT /product="conserved hypothetical protein" FT /note="Similar to Rattus norvegicus 3-hydroxyisobutyrate FT dehydrogenase, mitochondrial precursor HIBADH FT SWALL:D3HI_RAT (SWALL:P29266) (335 aa) fasta scores: E(): FT 9.8e-21, 33.45% id in 278 aa, and to Rhizobium meliloti FT putative oxidoreductase protein SMC00274 SWALL:Q92PN5 FT (EMBL:AL591788) (295 aa) fasta scores: E(): 1.3e-23, 34.01% FT id in 294 aa" FT /protein_id="CAE35946.1" FT /translation="MTPIKTVAFIGVGNMGAPMARCARRAGFELIVCDRNPDVLAAFAQ FT EGVRVTASISDCAAADAVVVLLANDAQIMETMLGGQGLAQAVPAGHRPIVCMMSTTLPD FT TLRALEAPLAAVGARLVDAPVSGGIVGAEAGTLTIMMGGETADVEAVRPLMQAMGERLF FT HCGALGSAEIAKVINNMLCVANMFLTAEAIELAESHGVAFESLTPILSVSTGLNFLTAD FT APTARAQYGAWARSEQAYAAIHQIVGKDLHLALKLAQLASLDLGLLKSVSQYVDADDPQ FT AMARWMRGGRAASAA" FT misc_feature 382831..383331 FT /note="HMMPfam hit to PF03446, NAD binding domain of FT 6-phosphogluconate dehydrogenase, score 0.0035" FT CDS 383802..385010 FT /transl_table=11 FT /locus_tag="BPP0363" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa leucine-, FT isoleucine-, valine-, threonine-, and alanine-binding FT protein precursor BraC SWALL:BRAC_PSEAE (SWALL:P21175) (373 FT aa) fasta scores: E(): 1.5e-12, 23.63% id in 347 aa, and to FT Ralstonia solanacearum probable leucine-specific binding FT precursor transmembrane protein RS02149 SWALL:Q8XPP6 FT (EMBL:AL646085) (380 aa) fasta scores: E(): 6.6e-14, 25.39% FT id in 378 aa" FT /protein_id="CAE35947.1" FT /translation="MKQLKHALAAASLSALVMAAGSAHAQESKTLILGVSAPMSGAAAT FT WGLGQEWTAKQAAKEINDAGGVKIGGTTYKFEVRAYDNKYNAAEGTKVAQNIVNRDKSR FT YVVGSIGTAPILALQSLTERNGVILFTSAWGKTVKGPQKPYTLTQSNTPFEILAPLYDY FT VKAKHPAIKTVAMLNPNDATGKETEPVAQKAWEKLGVKVVSVNWYERGTTQFQPIAQKL FT AAVKPDAIDLGVTPPADAGVVFRELSVLGWNGVKVQPVGTGAAQLVEIGGKAADGVYMG FT FSGDYEGAQATAKQRELNEGMKKAIGESLNPLQLAPYDSVYALKAGMEAANSIEPADIV FT KALPTIVFETSYGKTAFGGAQTYGSPQQMLIPIMITQIQDGKLVEVERVVPQELQQRLA FT KSN" FT misc_feature 383802..383876 FT /note="Signal peptide predicted for BPP0363 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.994 between residues 25 and 26" FT misc_feature 384603..384626 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT CDS 385046..385921 FT /transl_table=11 FT /locus_tag="BPP0364" FT /product="branched-chain amino acid transport system FT permease" FT /note="Similar to Pseudomonas aeruginosa high-affinity FT branched-chain amino acid transport system permease protein FT BraD SWALL:BRAD_PSEAE (SWALL:P21627) (307 aa) fasta scores: FT E(): 3.6e-22, 34.12% id in 296 aa, and to Rhizobium FT meliloti probable high-affinity branched-chain amino acid FT transport permease ABC transporter protein SMC01951 FT SWALL:Q92MX1 (EMBL:AL591790) (300 aa) fasta scores: E(): FT 3.4e-21, 30.43% id in 299 aa" FT /protein_id="CAE35948.1" FT /translation="MDVYMQLTMNSLQIAAAYILFSLGLTLIFGVMRIVNFAHGEFFTL FT PLLVMGVLVPLLVGAQLPLIVSYALSGVLGIAATLLLGGLIYKFALKRFLRDMTGSFVV FT SVGLSLLLQGVFLETFGGVPTKLPTLVEGTVNILGAFVTVQRLIITGCALLVAVFMCWT FT IVSSRLGKALRAVAEDHEAAMLQGIPYRRIALAGFLIATVLAAIAAVLLSPVTVSSPII FT GNDYLIRGFIAIVIGGLGSIPGAILGSVLIAVIESLGGYYFDPTWATITMFALTMFVLL FT VRPKGILGNG" FT misc_feature 385058..385915 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 4.8e-34" FT misc_feature join(385085..385138,385157..385225,385238..385306, FT 385343..385411,385469..385537,385622..385690, FT 385733..385801,385820..385888) FT /note="8 probable transmembrane helices predicted for FT BPP0364 by TMHMM2.0 at aa 10-27, 34-56, 61-83, 96-118, FT 138-160, 189-211, 226-248 and 255-277" FT CDS 385914..386858 FT /transl_table=11 FT /locus_tag="BPP0365" FT /product="branched-chain amino acid transport system FT permease" FT /note="Similar to Brucella melitensis high-affinity FT branched-chain amino acid transport system permease protein FT BMEII0101 SWALL:Q8YDS4 (EMBL:AE009648) (315 aa) fasta FT scores: E(): 3.1e-18, 30.59% id in 304 aa, and to Rhizobium FT loti ABC transporter, permease protein MLR9036 SWALL:Q982J5 FT (EMBL:AP003015) (311 aa) fasta scores: E(): 1.2e-18, 30.03% FT id in 303 aa. Possible alternative translational start FT site" FT /protein_id="CAE35949.1" FT /translation="MAKPFFTPAAAAIVLVALAGGLLQGGGLAASLVLWLAINVLITAS FT FRFVTLIGELNFAVAGFVGLGAYMAGVAAVQLEWPFLLTLAASAVFAGLVSLVFGYITL FT RAKGAYFMLISFAFTEVIRMIYTKTEAVGGSSGMIGIFAPAYLEAYYPAFVIAVVLALL FT WVLWRLEKSDFGKVLVAIRNNDAIVETVGINVHLTKVLCLGVSSFVAGIAGALLAYANN FT VIGPGDFGFLLAVYALAYLKVGGESHILGAVVGAIVLTLLGQFALSFGPYEHIFYGAAI FT VISVLLMPGGLIGLGRYFNRRPPKLGAAAKSQA" FT misc_feature join(385971..386039,386076..386144,386154..386222, FT 386235..386288,386346..386414,386511..386570, FT 386583..386636,386655..386723,386733..386801) FT /note="9 probable transmembrane helices predicted for FT BPP0365 by TMHMM2.0 at aa 20-42, 55-77, 81-103, 108-125, FT 145-167, 200-219, 224-241, 248-270 and 274-296" FT misc_feature 385986..386804 FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 4.7e-06" FT CDS 386867..387601 FT /transl_table=11 FT /locus_tag="BPP0366" FT /product="ABC transport system ATP-binding protein" FT /note="Similar to Aeropyrum pernix hypothetical FT high-affinity branched-chain amino acid transport FT ATP-binding protein APE2524 SWALL:Q9Y8W0 (EMBL:AP000064) FT (242 aa) fasta scores: E(): 5e-28, 42.5% id in 240 aa, and FT to Rhizobium loti branched-chain amino acid ABC FT transporter, ATP-binding protein MLL4886 SWALL:Q98D29 FT (EMBL:AP003005) (241 aa) fasta scores: E(): 1.1e-25, 41.59% FT id in 238 aa" FT /protein_id="CAE35950.1" FT /translation="MDAQVLLKVEGMTRRFGGLVAVKDLSFEVREGEILGLIGPNGAGK FT STTFNVVSGYYKPTSGRLAFKGRDITGLGPARIARQGLVRTFQHDSLLREMTVYDNIVV FT GTFAMLRQRHERDARVRETAALMGLTEVLDEVAGNLPHGLQRLVSIAIAFAARPSLLCL FT DEPLTGLNQTEAMAVLAIFRRMREEHGISILLVEHNMKAVMDICDRIVVLDYGVFLATG FT TPQEIQTNPDVISAYLGKRHEK" FT misc_feature 386960..387514 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 5.6e-50" FT misc_feature 386981..387004 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 387591..388313 FT /transl_table=11 FT /locus_tag="BPP0367" FT /product="ABC transport system ATP-binding protein" FT /note="Similar to Pseudomonas aeruginosa high-affinity FT branched-chain amino acid transport ATP-binding protein FT BraG SWALL:BRAG_PSEAE (SWALL:P21630) (233 aa) fasta scores: FT E(): 1.6e-29, 46.35% id in 233 aa, and to Thermotoga FT maritima branched chain amino acid ABC transporter, FT ATP-binding protein TM1139 SWALL:Q9X0M3 (EMBL:AE001771) FT (239 aa) fasta scores: E(): 4.1e-34, 48.73% id in 238 aa" FT /protein_id="CAE35951.1" FT /translation="MKNNDHALDVDGLSVKYGIVPAVNAASFAVRKGSIATIVGSNGAG FT KSTIMKALTGLVAPAAGRVRLYGEDITGLAPDALVERGLVLVPEGRRLFKGMTVGENLE FT LGAYREKDKRAIRHGIEGVLARFPALKSRLGSLAGSLSGGQQQMVAVGRALMAKPRLLL FT LDEPTIGLAPAIVDTIAQIIQDIAAEGVDVMLVEQNAEMALEIATHAFILERGEIQLEG FT PAAELASSEAVRKAYLGI" FT misc_feature 387687..388238 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.5e-46" FT misc_feature 387708..387731 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 388011..388055 FT /note="PS00211 ABC transporters family signature." FT CDS 388362..389123 FT /transl_table=11 FT /locus_tag="BPP0368" FT /product="putative short chain dehydrogenase" FT /note="Similar to Pseudomonas paucimobilis FT 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinC FT SWALL:LINC_PSEPA (SWALL:P50197) (250 aa) fasta scores: E(): FT 2.5e-22, 35.96% id in 253 aa, and to Rhizobium meliloti FT putative hypothetical protein SMA0339 SWALL:Q930L3 FT (EMBL:AE007211) (257 aa) fasta scores: E(): 3.3e-27, 42.8% FT id in 250 aa" FT /protein_id="CAE35952.1" FT /translation="MNRLEGKVVFITGGGAGIGRASALLFAREGARVVIAERDADAGRQ FT TVELIAGQGGPRALFVPTDVTEADSVEQAVARTVAEYGRFDVLYNNAGGSTVRDSRVTD FT TPVEEFWAKMKLDLFGTWLGCRYGIQAMIDAGHGGAVINSTSIFALIGTHGKDAYTAAK FT GAVSALTRSMAVEYAQHRIRVNAVAPGATATERVLKLLQEDGVTSKSLDGQLFGLVQPE FT DIAHAALYLASDESKSTTGHILAVDGGLTIS" FT misc_feature 388374..389111 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 9.8e-67" FT misc_feature 388797..388883 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 389141..389431 FT /transl_table=11 FT /locus_tag="BPP0369" FT /product="conserved hypothetical protein" FT /note="Similar to Agrobacterium tumefaciens str. C58 FT conserved hypothetical protein ATU0777 SWALL:AAL41793 FT (EMBL:AE009045) (102 aa) fasta scores: E(): 0.0033, 26.26% FT id in 99 aa, and to Rhizobium loti hypothetical protein FT MLR3059 SWALL:Q98H26 (EMBL:AP003001) (105 aa) fasta scores: FT E(): 0.13, 31.25% id in 80 aa" FT /protein_id="CAE35953.1" FT /translation="MFRHIVMLGFKQPLTTQDHDYMVQACAAIRRELPGVIDLRFVANE FT ADRGLAYTHAFVGDFVDAAAHEHYQRAAIHVPLKQRVMELSSHLVVLDCRL" FT CDS 389466..390248 FT /transl_table=11 FT /locus_tag="BPP0370" FT /product="putative short chain dehydrogenase" FT /note="Similar to Escherichia coli oxidoreductase UcpA FT SWALL:UCPA_ECOLI (SWALL:P37440) (263 aa) fasta scores: E(): FT 7e-15, 32.31% id in 263 aa, and to Bacillus halodurans FT 3-oxoacyl-(acyl-carrier protein) reductase BH0932 FT SWALL:Q9KEC1 (EMBL:AP001510) (252 aa) fasta scores: E(): FT 6.3e-19, 32.15% id in 255 aa" FT /protein_id="CAE35954.1" FT /translation="MDMRLAGKSVLITGASQGIGAGLAHAFAGEGCALVLVARSHEKLQ FT ALRAELLARHDVGIEVQAMDLTRLDSVEQLAASYGAVDILVNNAGGIPGGDLWSVDAQR FT WRAGWELKVMGYVDVTRAFYRRMRERGHGVILNNIGSGGENYDFDYIAGTAGNAALMAF FT TRALGGKSLRDGIRVVGVNPGPVATARIETLMRGRARELYGDAERYTELLARLPLGRAA FT SVQEVADLFVFLASPRSAYTSGVIVTIDGGMTSNKSIA" FT misc_feature 389481..390224 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 1.6e-42" FT CDS 390264..391415 FT /transl_table=11 FT /locus_tag="BPP0371" FT /product="NADH:flavin oxidoreductase / NADH oxidase family FT protein" FT /note="Similar to Enterobacter cloacae pentaerythritol FT tetranitrate reductase Onr SWALL:P71278 (EMBL:U68759) (365 FT aa) fasta scores: E(): 1e-20, 31.51% id in 349 aa, and to FT Pseudomonas aeruginosa probable FMN oxidoreductase PA3723 FT SWALL:Q9HXR8 (EMBL:AE004791) (368 aa) fasta scores: E(): FT 9.6e-60, 49.72% id in 358 aa" FT /protein_id="CAE35955.1" FT /translation="MNQEAENTKLFAPLSLRGVVLPNRVLISPMSQYSAVDGVVQDWHG FT YHVAGMARGYPGSVMLEVAAVTRDGRGTPGDLGIWSDEQIAGLAELARIIEAHGVVPAI FT QIGHAGRKASMQRPWEGGRPLALDSSDEAWQAVGASALPIQDGWPAPRQLAQRELAGLV FT DSFRAAAARAVQAGYRFVEVHAAHGYLLHSFLSPISNQREDLYGGSLENRMRFPLEVVA FT AVRAALPDEVPLSVRISAVDGVEHGWQLADSIVFARELKALGVDLVDCSSGGIQGSATA FT GKGPQAVKRGPGFQVPFAHAVRQEAGIATIAVGLIVEPAQAEAILRQEQADLIAIGREA FT LQNPNWPLHARQALGADRDYSAWPAQYGWWLQRRPKVAWEEGR" FT misc_feature 390288..391334 FT /note="HMMPfam hit to PF00724, NADH:flavin oxidoreductase / FT NADH oxidase family, score 1.4e-72" FT misc_feature 391656..392375 FT /note="HMMPfam hit to PF02698, Uncharacterized ACR, FT COG1434, score 1.7e-06" FT CDS 391665..392420 FT /transl_table=11 FT /locus_tag="BPP0372" FT /product="putative exported protein" FT /note="Similar to Ralstonia solanacearum probable FT lipoprotein transmembrane RSC0146 SWALL:Q8Y335 FT (EMBL:AL646057) (251 aa) fasta scores: E(): 1.4e-59, 58.56% FT id in 251 aa, and to Brucella melitensis putative membrane FT protein BMEI1842 SWALL:Q8YEN6 (EMBL:AE009618) (263 aa) FT fasta scores: E(): 3.4e-22, 32.4% id in 250 aa" FT /protein_id="CAE35956.1" FT /translation="MTVLLLIVLVLLAAGLAWRQWRRASRMLYGLSLVLFLALGCGPIA FT AWLLDGLQSDYQAKPPIAWGQRNAIVLLGAGTEQAAGRIEPGIFSYARIVEAARRYHDC FT RKAAAQCKLIASGGDAAYHGDAEANVYRDPLVALGVDAADVLPEPGSMNTWQNAQFTSA FT VLRRYDADRVVLVSSGIHLKRSALYFAYFGVAATPVRADYLHARRSVVPLSYNFAVADF FT ALHEYLGIVRYHVYNLLGWNPARTQPGQA" FT misc_feature 391665..391802 FT /note="Signal peptide predicted for BPP0373 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.858) with cleavage site FT probability 0.698 between residues 31 and 32" FT CDS 392755..393204 FT /transl_table=11 FT /locus_tag="BPP0373" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMB20026 SWALL:Q92XD3 (EMBL:AL603642) (153 aa) fasta FT scores: E(): 3.4e-08, 30.82% id in 146 aa, and to FT Agrobacterium tumefaciens hypothetical protein AGR_PAT_474P FT SWALL:AAK90705 (EMBL:AE007902) (154 aa) fasta scores: E(): FT 2.7e-07, 32.87% id in 146 aa" FT /protein_id="CAE35957.1" FT /translation="MRRVDYRDLIGGGLVTLAGAAAMYHSLTAFSVGTAARMGPGYFPA FT LVGGLLMLCGVMILIPALLRAGPMPVLEIRPLFWVSLSVLAFALLVLSFGLVPAIIAQS FT VLAGISDCKLSLRNSLLLAGGLSVGATLIFKVGLGVILPAFAWPW" FT misc_feature join(392782..392850,392875..392943,392986..393054, FT 393112..393180) FT /note="4 probable transmembrane helices predicted for FT BPP0373 by TMHMM2.0 at aa 10-32, 41-63, 78-100 and 120-142" FT CDS 393217..394734 FT /transl_table=11 FT /locus_tag="BPP0374" FT /product="putative membrane protein" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein RSC0793 SWALL:Q8Y197 (EMBL:AL646061) FT (500 aa) fasta scores: E(): 1.7e-96, 51.91% id in 497 aa, FT and to Rhizobium meliloti hypothetical protein SMB20027 FT SWALL:Q92XD2 (EMBL:AL603642) (501 aa) fasta scores: E(): FT 1.1e-95, 52.13% id in 493 aa" FT /protein_id="CAE35958.1" FT /translation="MELFDNIMLGLSTALAWNNLLWCIIGVSLGTLIGVIPGVGTLATM FT SLLFPITYVLEPTAALIMLAGIWYGSTYGGSTASILLNLPGTPANAVTCLDGFPMAKQG FT RGGVALLMTTVASFFGASVGIVMMMLFSPLVAEVAFKFGPAEYFSIMALGLVAASVVSS FT GSAIKGITMVVGGVMLGLVGTDVNSGVARFDFGFPELQDGVQIVALAMGLFGVTEIIAS FT INHVKAADRKIDVSMKAMLPTRDEMKRSWGPMARGSGLGSFFGVLPGVGPTVAAFMAYA FT LEKRTSKTPERFGRGAIEGIMAPESANNASDQASFIPTMTLGIPGSVTMALIIGALMIH FT GIQPGPQMLTEQPEMFWGLVMSFWIGNIVLVILNVPMIGLWVRVLTIPYHVLYPAIVMF FT ICIGTYAVNNNVFDVYAVLVFGIAGYILRVLGFEPAPLLLGYVLGPMLEENFRRAMLLS FT RGSLQTFIERPISMWVLLLTVFLLAWGMWSSLRQRPAARMAPASGST" FT misc_feature 393271..394533 FT /note="HMMPfam hit to PF01970, Integral membrane protein FT DUF112, score 2.3e-75" FT misc_feature join(393274..393342,393355..393423,393538..393606, FT 393649..393717,393721..393789,393832..393900, FT 393985..394053,394162..394230,394291..394359, FT 394369..394437,394456..394512,394621..394680) FT /note="12 probable transmembrane helices predicted for FT BPP0374 by TMHMM2.0 at aa 20-42, 47-69, 108-130, 145-167, FT 169-191, 206-228, 257-279, 316-338, 359-381, 385-407, FT 414-432 and 469-488" FT CDS complement(394815..396188) FT /transl_table=11 FT /locus_tag="BPP0375" FT /product="sensor kinase protein" FT /note="Two-component regulatory system family, sensor FT kinase protein. Similar to Escherichia coli sensor kinase FT CusS SWALL:CUSS_ECOLI (SWALL:P77485) (480 aa) fasta scores: FT E(): 1e-16, 27.5% id in 480 aa, and to Rhizobium loti FT two-component sensor MLL5777 SWALL:Q98B08 (EMBL:AP003007) FT (460 aa) fasta scores: E(): 2.4e-33, 31.79% id in 456 aa" FT /protein_id="CAE35959.1" FT /translation="MICFLRRLWNSISFRLTLNYGLLAILTTLILSAFIYTQFIGALRT FT EYTRQITSTAQRLEVAYEEGGRNALAAAIELTLSDRIDADREIYLLLDEHGRKIAGNLD FT ASLPLNSTRPDVYEADVIHDGMPTRGHLKVLPLADGETLVVGHDSSEIGDITSLIGQAT FT ATAILLAVLLVLLGTYIFRRELAHRVSHIRQTTQLIGAGQLSKRISAPTGEDEFTLLNR FT DVNAMLDRIELLMKSARHISDTIAHNLRTPLTRIIGALRAAQRPGVSMTDVLEANQHAI FT ESIERLNVLLEKLLQIAELEAGIQRRSFRPCELDVIVADVLEMYGTLAEEKGVSLLRAK FT LDNVTLHGDANLLASALANLIDNAVKFAASRVVVDVTRQNRTALVTITDDGAGLPPAEY FT EHLGKHFYRSDPSSEGHGLGLTSVKSIVGLHVGTLGFSDARPGLRVTVSLPLDPKSKP" FT misc_feature complement(394833..395147) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 3.6e-29" FT misc_feature complement(395280..395480) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 3.5e-07" FT misc_feature complement(395490..395702) FT /note="HMMPfam hit to PF00672, HAMP domain, score 2.4e-06" FT misc_feature complement(join(395646..395711,396063..396128)) FT /note="2 probable transmembrane helices predicted for FT BPP0375 by TMHMM2.0 at aa 20-42 and 159-181" FT CDS complement(396185..396898) FT /transl_table=11 FT /locus_tag="BPP0376" FT /product="transcriptional regulatory protein" FT /note="Two-component regulatory system family, response FT regulator protein. Similar to Escherichia coli FT transcriptional regulatory protein PcoR SWALL:PCOR_ECOLI FT (SWALL:Q47456) (226 aa) fasta scores: E(): 1.1e-32, 44.84% FT id in 223 aa, and to Brucella melitensis two component FT response regulator BMEI1329 SWALL:Q8YG33 (EMBL:AE009571) FT (235 aa) fasta scores: E(): 7.2e-45, 53.3% id in 227 aa" FT /protein_id="CAE35960.1" FT /translation="MWQCLLIEDDQANARYLANGLTELGHMVTVSGDGASGLENAMKDQ FT WDIIILDRMLPNNVDGLSILSTLRALGKKTPVLVLSALSAVDDRVDGLRAGGDDYLVKP FT FSFSELVARLDALVRRTRPDPDVKELRIADLSVNVATQKVQRAGRPISLQPQEFRLLVY FT LMLHAHRIVTRTMLLETIWGYSFDPQSNVIDVQVSRLRRKIDASCATPLIHTIRGAGYT FT LSDKQGSDNMELGKE" FT misc_feature complement(396239..396454) FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal, score 1.9e-21" FT misc_feature complement(396533..396895) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 5.9e-32" FT CDS 397477..398073 FT /transl_table=11 FT /locus_tag="BPP0377" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA0431 SWALL:Q930G9 (EMBL:AE007216) (197 aa) fasta scores: FT E(): 4.4e-36, 54.35% id in 195 aa, and to Agrobacterium FT tumefaciens str. C58 conserved hypothetical protein ATU6081 FT SWALL:AAL46317 (EMBL:AE009427) (197 aa) fasta scores: E(): FT 5.9e-19, 40.33% id in 181 aa" FT /protein_id="CAE35961.1" FT /translation="MNTLPETILRQAQSLPEGGVLSPKEFLHLGSRPAVDQAFSRLAKA FT GKLLRVARGTYTAPVASRFGARAPAPEKVVQALAEQSGETVVPHGASAANTLGLTQQVP FT LREVYLTSGRTRKLKLGRSEVLVKHAPRWMLALGARPAGAAVRALAWIGPAHAGESLVL FT LRRTLPHAEWQALASARATLPGWMAQAIGKEAARE" FT CDS 398066..399082 FT /transl_table=11 FT /locus_tag="BPP0378" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA0429 SWALL:Q930H0 (EMBL:AE007216) (338 aa) fasta scores: FT E(): 1.9e-64, 51.32% id in 339 aa, and to Agrobacterium FT tumefaciens str. C58 conserved hypothetical protein ATU5044 FT SWALL:AAL45736 (EMBL:AE008929) (375 aa) fasta scores: E(): FT 6.1e-05, 30.64% id in 372 aa" FT /protein_id="CAE35962.1" FT /translation="MNEYFFDLSKTDQRDVLEYGRAETGRPAHLFEKDIWVVWTLRALF FT ASPLAADLTFKGGTSLSKVYKVIDRFSEDIDLTYDIRKLIPDLIGAGGELPASRSQASK FT WTQAVRHRLPGWITRAVLPVIQAALAHERLDAQLELGGQGRDKLFLRYPALTQGTGYVA FT PVVTLEFGGRATGEPHQVCPVVCDIAESLTEVSFPIASPLVMSVARTFWEKATAAHVFC FT AQGRIRSERYARHWHDLAAIARSPHFAALVTDRAVAEAVARHKSCFFMEKDAVGQVIDY FT MAAATGHLKIVPEGEARAALAKDYAAMLADELMVGDAMSFDALMAACAALEAELNKV" FT CDS 399399..399680 FT /transl_table=11 FT /locus_tag="BPP0379" FT /product="conserved hypothetical protein" FT /note="Similar to enteropathogenic Escherichia coli FT adherence factor plasmid hypothetical protein Orf80 FT SWALL:Q9S0Y9 (EMBL:AB024946) (95 aa) fasta scores: E(): FT 1.4e-07, 33.33% id in 84 aa, and to Salmonella typhimurium FT putative ABC-type transport system STM2904 SWALL:Q8ZMH5 FT (EMBL:AE008832) (96 aa) fasta scores: E(): 7.5e-06, 36.78% FT id in 87 aa" FT /protein_id="CAE35963.1" FT /translation="MSGTAEVKDERLQVRLNAEAKTVLQRAASYRHKTVSQFVLTTALA FT EAEKVIRENEAVSLSAADWKMFYDALSAPPAPNAALRKAFAKYQKAAG" FT CDS 399677..400198 FT /transl_table=11 FT /locus_tag="BPP0380" FT /product="acetyltransferase (GNAT) family protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein RS02184 SWALL:Q8XPL3 (EMBL:AL646086) (163 aa) fasta FT scores: E(): 7.3e-21, 45.09% id in 153 aa, and to Rhizobium FT meliloti hypothetical protein SMC04221 SWALL:Q92P92 FT (EMBL:AL591788) (174 aa) fasta scores: E(): 2.4e-17, 42.3% FT id in 156 aa" FT /protein_id="CAE35964.1" FT /translation="MMAVPLAWLVSAFDGKAHDRTAFSCGSPELDRYLREHASQDIKRD FT IARVFVAVRPATTTVCGYCSLSATSFQRDELPAEQARKLPRHPVPAVLLGRLAVDCDAQ FT GSGLGEFLLMDAMHRTLLATQVMAVYAMVVDAKDASAAKFYRKYGFIALPNNAQRLFLP FT METIRQLQES" FT misc_feature 399830..400129 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 0.011" FT tRNA complement(400377..400452) FT /note="tRNA Phe anticodon GAA, Cove score 86.41" FT CDS 400707..401981 FT /transl_table=11 FT /gene="hemA" FT /locus_tag="BPP0381" FT /product="glutamyl-tRNA reductase" FT /EC_number="1.2.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0677" FT /protein_id="CAE35965.1" FT /translation="MSVAVLAFGLNHTSAPVSVRERVSMPVDLVKPALEGLRATFGGAV FT REAAILSTCNRTELYCAAEGQVAEHLPAWLAEHNRLEAAALRPHLYRHQHDDAVRHAFR FT VASGLDSMVLGEPQILGQMKDAVRAANEAGALGTLLHQLFQRTFSVAKEVRSQTAIGAH FT SVSMAAAAVRLAERVFGQLEDARTLFIGAGEMIELCATHFAAQRPRSMVVANRTIERAE FT TLAGRFSAQTMKLADLTERLAEFDVIVSCTASSLPILGLGMVERATRQRRHRPMVMIDL FT AVPRDIEPEVGRLDDVYLYSVDDLGRLVQSGTDARRAAVVQAEAIIETRVQGFMHWMQS FT REVVPVIRDLHQAADDVRAAELERARRMLARGESPEAVLEQLAHGLTQKYLHGPLAALN FT RSEGDERRQLLAWVPRLFPGRDSRR" FT misc_feature 400713..401966 FT /note="HMMPfam hit to PF00745, Glutamyl-tRNAGlu reductase, FT score 9.1e-180" FT misc_feature 401181..401228 FT /note="PS00012 Phosphopantetheine attachment site." FT CDS 402068..403150 FT /transl_table=11 FT /gene="prfA" FT /gene_synonym="sueB" FT /gene_synonym="uar" FT /locus_tag="BPP0382" FT /product="peptide chain release factor 1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0678" FT /protein_id="CAE35966.1" FT /translation="MKPSMRSRLEQLAHRLIEVDALLAEPETAADMDRFRKLSRERAEL FT EPVVEAFNAFLGVEADVATAQEMLSDPDMKAMAEDEIKTGRARIEEMEAALQLLLLPRD FT PDDGRSLFLEIRAGTGGDESALFSGDLLRMYTRYAETRGWRVEIMSESESELGGYKEVI FT VRIDGDGAYGRLKFESGAHRVQRVPATEAQGRIHTSACTVAVMPEADAMSDIVINPSDL FT RIDTFRASGAGGQHINKTDSAVRITHVPTGLVVECQDDRSQHRNKDKAMQVLAARLKDK FT EMRERQSKEAAERKSLIGSGDRSERIRTYNYPQGRVTDHRINLTLYKLQQIMEGDLDEL FT TGALLAEHQAEQLAALGHDL" FT misc_feature 402254..402601 FT /note="HMMPfam hit to PF03462, PCRF domain, score 9.9e-65" FT misc_feature 402689..403030 FT /note="HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase FT domain, score 6.5e-71" FT CDS 403161..403973 FT /transl_table=11 FT /gene="hemK" FT /locus_tag="BPP0383" FT /product="heme biosynthesis protein" FT /EC_number="2.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0679" FT /protein_id="CAE35967.1" FT /translation="MTLLKDLLADPGLPRLEARMLAEHVLGRSRAWLLAHDTDPVEPAH FT EAAWRQLAARRLAGEPMAYLLGGREFMGHWFALTPDVLIPRPDTELLVETALHWLQGRV FT APRVLDLGTGSGAIAVSVALGCPQAQVTATDLSAAALAVAEGNAQRLGARVRCLAGDWY FT EALPAQDRYDLIVSNPPYIAREDAHLAQGDLRFEPRGALTDENDGLAALARIAGGAPGR FT LLPGGAIWMEHGWDQAEAARALLRQAGLREVHSRRDLAGIERISGGYL" FT misc_feature 403359..403394 FT /note="PS00213 Lipocalin signature." FT misc_feature 403683..403703 FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT CDS 404011..404337 FT /transl_table=11 FT /locus_tag="BPP0384" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0680" FT /protein_id="CAE35968.1" FT /translation="MSDVQEFIRETVTQHPVVLFMKGTAQFPQCGFSGRAIQILKGCGV FT KKLVTVNVLEDDEVRQAIKTFSNWPTIPQLYVGGEFIGGSDIMSEMNESGELKQLLDDS FT GATA" FT CDS 404342..404902 FT /transl_table=11 FT /locus_tag="BPP0385" FT /product="probable flavoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0681" FT /protein_id="CAE35969.1" FT /translation="MRRLVVGITGATGAIYAVRLLQALRGVSDVESHLIVSASGVLNIK FT HELDVGRHDVQALADHVHSVRDVGATLASGAFQTAGMVIVPCSMRTLAAVAHGLSDNLI FT TRAADVTLKERRRLVMMVRETPFNLAHLRNMTAVTEMGGIIFPPLPAFYHRPASIEEMV FT DHTVARVLELFDIEVPGPHWAGM" FT misc_feature 404345..404710 FT /note="HMMPfam hit to PF02441, Flavoprotein, score 1.7e-41" FT CDS 405144..406136 FT /transl_table=11 FT /locus_tag="BPP0386" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0682" FT /protein_id="CAE35970.1" FT /translation="MQRRCFLAKVARIAAAVGVSACAANGSFAATGDFPNKPLDIIVTF FT PPGGGTDMLARLIGNYLTESLGQTAVVENRPGASGNVGARLVADRAPDGYSLLMVNSSF FT AVNPGVFRNLPFDPKKDFAAVINVAYVPSVFVVPAGSKYKTLGELMAAAKQTNTQVTYG FT SCGNGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFIKA FT GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAK FT VMQRDDVQKKLADLGYSTASDGPEVFQKMVETDIDRFSALTKQIGLKVD" FT misc_feature 405144..405230 FT /note="Signal peptide predicted for BPP0386 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.984 between residues 29 and 30" FT misc_feature 405303..406124 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 4.3e-97" FT CDS 406155..407150 FT /transl_table=11 FT /locus_tag="BPP0387" FT /product="4,5-dihydroxyphthalate decarboxylase" FT /EC_number="4.1.1.55" FT /note="ortholog of Bordetella pertussis (BX470248) BP0683" FT /protein_id="CAE35971.1" FT /translation="MSSKLKISRSCGDYDRTRALFDGRAPIEGCEVTAVPLEPEEAFHR FT AFRYHEYDVTEISMSSHMMTTARGDNEYIAIPAFLSRVFRHSGIYVRTDRGIDKPQDLR FT GKTIGVPEYQITANVWIRGILEDAYGVKPQDIKWRRGGIEEPGRGERAPIELPDGIDLQ FT QIPDDKTLSDMLEAGEIDGYIGARAPSCFLRGAPNVGRLFNDYLKTEQDYFRETRIFPI FT MHMVGIRRSLVEQNPWLPVSVYKAFLKAKMLAVKELNEICHLAVTLPWMVHHYNAAREL FT MGDDYWPYGLDANRHVIETFARYHYGQGLSRRLVKPEELFAASSLDLSKI" FT CDS 407166..408035 FT /transl_table=11 FT /locus_tag="BPP0388" FT /product="molybdopterin dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0684" FT /protein_id="CAE35972.1" FT /translation="MKAPALQYHAPASLPQALQLLSEHDNARVLAGGQSLVAMLNMRFA FT FPDCLIDINRVPELAYIRHEQGEVCIGAMTRQREIEFSPLVAQHLPLWREAVLQVGHRQ FT TRNRGTVGGSLCQLDPSAEIPTVALAMDATLSVASVRGTRTLAMADFPAGYMTPALEPD FT EMLVGLAVTPWPAGHGHAFVEFARRHGDFAIVSVAVLLLLDDAGCVARASITLGGVAAT FT PVRMAQAEAALLGQPAEPATLARAAALCAAIDAKADSYVPSWYRQRLARVLTERALTQA FT VARAKESE" FT misc_feature 407175..407687 FT /note="HMMPfam hit to PF00941, FAD binding domain in FT molybdopterin dehydrogenase, score 9.4e-24" FT misc_feature 407700..408023 FT /note="HMMPfam hit to PF03450, CO dehydrogenase FT flavoprotein C-terminal domain, score 1.9e-05" FT CDS 408032..408541 FT /transl_table=11 FT /locus_tag="BPP0389" FT /product="probable 2Fe-2S ferredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0684A" FT /protein_id="CAE35973.1" FT /translation="MSDITESTAQHVSLTVNGRACGGCAEPRMHLADFLRGELGLTGTH FT IGCEHGVCGACTVLVDGYSTRSCLMLAVQAQDSRVDTIEGLAGEDDALHPIQQAFHELH FT ALQCGYCTPGILMSVAELLAANPDPDEVQVRDVLSGHLCRCTGYQNIVAAVLRAAQLMR FT AEAGHD" FT misc_feature 408071..408253 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain, score 0.021" FT misc_feature 408173..408199 FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature 408275..408502 FT /note="HMMPfam hit to PF01799, [2Fe-2S] binding domain, FT score 7.8e-43" FT CDS join(408534..409826,409830..410915) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0390" FT /product="probable dehydrogenase/oxidase (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0685" FT /db_xref="PSEUDO:CAE35974.1" FT misc_feature 408600..408956 FT /note="HMMPfam hit to PF01315, Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain, score FT 2.4e-36" FT misc_feature join(408960..409826,409830..410663) FT /note="HMMPfam hit to PF02738, Aldehyde oxidase and FT xanthine dehydrogenase, molybdopterin binding domain, score FT 5.4e-141" FT variation 409827..409829 FT /note="In-frame TAG stop codon in parapertussis; CAG in FT pertussis" FT CDS 410959..411684 FT /transl_table=11 FT /locus_tag="BPP0391" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0686" FT /protein_id="CAE35975.1" FT /translation="MLDVPRIMPCLPGARLTEVLGPDKYRGSVTVRLGPIKLGFEGQAE FT LVRKDEATHTAWLQGSGMDPKGRGSAKSEFSFALTPAAHGGTDVTVNTQLALSGAVAQY FT GRGSGMIAEVAAQILGQFEQNLARSLSGEAQQGPVQPAGAMPARPGSAAPVAAAAPAPA FT GSAVSPDAQAVLLQAQAVLSQAQAVLAMAQASLARPARGAPSRAAAPSAELNMLGIGMR FT AMWARVRYTVGGWFGRRES" FT CDS complement(411860..412954) FT /transl_table=11 FT /locus_tag="BPP0392" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3435" FT /protein_id="CAE35976.1" FT /translation="MPCAVPVMSSPADLHPHARALLADHYAAIDADLPALLELLFARSA FT GEDWHKAGTFKHHLLGVYRTLALWNQPREVRLLGLFHSVYGNEYVDLTLFDRERERATL FT RQYLGEEAEQWVHLFCAMPRTQFVQRILAGEGRGATGLALQGADGQPLTLTPRQVAAFI FT VVSAADVGEQWHSWQDEIFAGYPHQERRDTSTHWAASLWPGPLKPPARILGMLSRLLQP FT LSTLPAGTGIPTPPAFGHCTAVLDAGDEAAAAALYWQVITRMHPMTEMDSAHHLLQAAI FT AHNPWVAEPRLLLAQLALTAQDYDTALEQAAAGLAALQAWGTSWDKRIEWSGWMAWARI FT LLQNARDRQWPATLGGLNGLGLVG" FT CDS join(413101..413637,413641..413895) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0393" FT /product="putative exported protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3434" FT /db_xref="PSEUDO:CAE35977.1" FT misc_feature 413101..413169 FT /note="Signal peptide predicted for BPP0393 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 23 and 24" FT misc_feature join(413179..413637,413641..413892) FT /note="HMMPfam hit to PF03180, NLPA lipoprotein, score FT 2.3e-101" FT variation 413638..413640 FT /note="In-frame TAA stop codon; CAA in pertussis" FT CDS complement(413935..414459) FT /transl_table=11 FT /locus_tag="BPP0394" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3433" FT /protein_id="CAE35978.1" FT /translation="MPEASHPDHLIRAGRLQADDARLFTPEADGPADQTPPDEPGWLVT FT LATWKAAAATLRARRHPVGVQLPPDARLDELTGPDGELDRAALSFIAIEFPVYTDGRGY FT SLAQLLRRRYGWDGELRAVGDVMIDTIHYQARVGFDSFLVKPGHDPQRALAAFRTFSVH FT YQHTYPAPLAA" FT CDS complement(414452..416194) FT /transl_table=11 FT /gene="cysI" FT /locus_tag="BPP0395" FT /product="putative sulfite reductase" FT /EC_number="1.8.7.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3432" FT /protein_id="CAE35979.1" FT /translation="MYVYDPVDQQLVEERVEQFSDQTRRFLDGQLTEDEFRTLRLQNGL FT YIQRHAPMLRIAIPYGMLAARQLRKLAHIARTWDRGYGHFSTRQNMQFNWPRLEDVPAI FT LAELASVQMHSIQTSGNCIRNTTSDHFAGVAPDELVNPLVWCEIIRQWSTLHPEFAFLP FT RKFKIAVSGAVEDRAAVGVHDIGLQAVERDGQLGFRFWVGGGLGRTPIVGHLINPFVPW FT QHLLTYLQAALRVYNLHGRRDNKFKARIKILVKDLTPEVYAREVEQEWQSLKDGPDTIT FT EDQLNTIAGRFVWPDYDSAAASEPDPTDARAQADPRFARWLRTNVRAHKVAGYAAVTVS FT LKATGVPPGDITADQMDAVADLSERYGFGELRVSHEQNLVLADVRRARLHDLWQELQQL FT NLATPNIGLLTNIIACPGGDFCALANAVSIPVAESIQRRFDDLDYLFEIGELDLNISGC FT INSCGHHHVGHIGILGVDKAGEEWYQVTLGGRQNGAAKPLPDLESPRGGGAAIGRIIGP FT SFARTQIPDVIDRLIRTYLELRDSDAERFIDVVDRVGIDPFKRDVYADPAVAKPASQQE FT PAHA" FT misc_feature complement(414764..414967) FT /note="HMMPfam hit to PF01077, Nitrite and sulphite FT reductase 4Fe-4S domain, score 1.2e-14" FT misc_feature complement(414998..415222) FT /note="HMMPfam hit to PF03460, Nitrite/Sulfite reductase FT ferredoxin-like half domain, score 3.1e-15" FT misc_feature complement(415862..416065) FT /note="HMMPfam hit to PF03460, Nitrite/Sulfite reductase FT ferredoxin-like half domain, score 2e-20" FT CDS 416535..417080 FT /transl_table=11 FT /locus_tag="BPP0396" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT Mll6832 SWALL:Q988A1 (EMBL:AP003010) (220 aa) fasta scores: FT E(): 2.7e-18, 38.15% id in 173 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa1154 SWALL:Q9I4I3 FT (EMBL:AE004545) (177 aa) fasta scores: E(): 2.2e-06, 26.87% FT id in 160 aa" FT /protein_id="CAE35980.1" FT /translation="MPRRARIVLQGHPHHVVQRAHRRQQIFTDEADCLPYLNDLQRERR FT RLQVAVYAWCLMPNHVHLLLAPLHDCRALSQIMGKLAGGAGRRFNHRHGLSGTLWESRY FT YSSVIGTEEYFRECCRYIELNPVRAGIVDRPEQYPWSSYRARMLGQGGVDAPPGYDATS FT PHGRLDLAAYARFVQEGM" FT CDS complement(417145..417903) FT /transl_table=11 FT /locus_tag="BPP0397" FT /product="putative branched-chain amino acid transport FT ATP-binding ABC transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP3431" FT /protein_id="CAE35981.1" FT /translation="MPTSAAATEPVFALDNVTVAYHGDITILNGVSVQARAGQVTGIIG FT PNGAGKSTVLKTLFGFLPLRGGRIMLRGQDISRQPSHERAASGVAFVPQHRSLFGELSV FT EDNLVLGCWPFRRDKDKVRRRIDSVYQRFPILAQKRHDPVSSMSGGQQRFVEFGRALLI FT EPSVILLDEPTAMLAPKISKEIYALVRGFADEGMTVILVDQNVRRCAEISDYMYILELG FT RNKAEGAHEQFGHDGGLRDMVASWMDYKID" FT misc_feature complement(417238..417792) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.1e-49" FT misc_feature complement(417748..417771) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(417906..418613) FT /transl_table=11 FT /locus_tag="BPP0398" FT /product="putative branched-chain amino acid transport FT ATP-binding ABC transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP3430" FT /protein_id="CAE35982.1" FT /translation="MLKVSNLQKRFGGLVALRGVDLHVPRAAILGIIGMNGSGKTTMLN FT CINGLYVPDAGSIELDGAEIAGKQVHEVARLGVGRTFQVPRVFQHLSLLDNLDVAQQQT FT GRSADERYAQSEYWLHKVELHRLRHNHAEELSGGQQKLLELARIMVAQPKVILLDEPFA FT GVNPALAQLLIAIIRDVPTEHGCSVVLVSHDLTSIYQLSHHIIVMNEGAILCEGDADRV FT RTDPRVIEAYLGA" FT misc_feature complement(417981..418535) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2e-52" FT misc_feature complement(418167..418211) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(418491..418514) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(418630..419511) FT /transl_table=11 FT /locus_tag="BPP0399" FT /product="putative branched-chain amino acid transport FT permease" FT /note="ortholog of Bordetella pertussis (BX470248) BP3429" FT /protein_id="CAE35983.1" FT /translation="MSGLIIQGLVNGLILGAIYGLIGVGLNVIFGVLRVVNFAHGEFLV FT LGAYFAYYLLEYAGIGPLLALPLAFGAFFLAGYVLYFVLIPRLSKADDPEISSLLLMFG FT VSIMLGAIMLLAFEADARSLPYEIEPVFFKIGPVLIPTVRLIALAIALAVVAVLAWFLY FT RTQMGKALRAIIMNRDAVRIVGINAERLSAVAFGLGIGLAAVTGVLVAMVFPAFSPFMG FT NDYTLIGFIVIVLGGLGHPVGALVGAMLFGVTEQVSVVFFNPSIATICGFVLMVAMIFV FT RPTGLFGHRALR" FT misc_feature complement(418639..419499) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 2.1e-26" FT misc_feature complement(join(418669..418734,418756..418821, FT 418867..418932,419026..419091,419161..419217, FT 419257..419322,419353..419418,419434..419499)) FT /note="8 probable transmembrane helices predicted for FT BPP0399 by TMHMM2.0 at aa 4-26, 31-53, 63-85, 98-117, FT 140-162, 193-215, 230-252 and 259-281" FT CDS complement(419522..420511) FT /transl_table=11 FT /locus_tag="BPP0400" FT /product="putative branched-chain amino acid transport FT permease" FT /note="ortholog of Bordetella pertussis (BX470248) BP3428" FT /protein_id="CAE35984.1" FT /translation="MSSSLAASAHASHRLQDQQTQRTRTRIATGIFAVLTLSLAVVPMA FT TSNISFAFYLMLWVTIASAMNICVGFTGYLPFGFVVFYGVGAYTTGICYKVLGWPILPS FT LAAASVVGLLIALLFAPTLRLRGVYFGIVSLALATIMRLLISNLPDGFTGGSMGLILSS FT ANSPTHSYYAMLAVMAATLATVAWLSVSRLGKALKAIRDDDAAAACVGIHVPRTRLKAW FT LLAALFPALAGGIEAWYTNVVDPEYAFHVLITAKSIIYAMAGGFGTIIGPVVGTLALLG FT IDHLIWQKFPVLNLLLLGLVIVLLMLFLPRGIVGSLLKRYPQLRQYIA" FT misc_feature complement(419558..420376) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 2.3e-06" FT misc_feature complement(join(419570..419635,419672..419737, FT 419783..419848,419939..420004,420065..420130, FT 420152..420217,420248..420313,420353..420418)) FT /note="8 probable transmembrane helices predicted for FT BPP0400 by TMHMM2.0 at aa 31-53, 66-88, 98-120, 127-149, FT 169-191, 221-243, 258-280 and 292-314" FT CDS complement(420614..421531) FT /transl_table=11 FT /locus_tag="BPP0401" FT /product="putative LysR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative FT transcriptional regulator, LysR family protein Rb1494 or FT Smb20582 SWALL:Q92TL7 (EMBL:AL603647) (306 aa) fasta FT scores: E(): 1.1e-28, 32.89% id in 301 aa, and to Ralstonia FT solanacearum probable transcription regulator protein FT Rsc2497 or Rs01099 SWALL:Q8XWH7 (EMBL:AL646070) (321 aa) FT fasta scores: E(): 1.2e-23, 31.57% id in 285 aa" FT /protein_id="CAE35985.1" FT /translation="MHALNKLSYRQTEMLWAIVTAGSISAAARLLNISQPAVSRMLAQT FT EKQLGLNLFERVRGRLQPTPEVRILFEEIEKTQRMMQRVNDLADALAGHGAGVLRLTSI FT PSLAQYLVPRAVARFQRTHADILLRLNATALPHLINDVLHGEAELGLVVMQADHPFLTS FT LPLHTGRMVAAIPRSHPLAERGQVTLADLSPHPHIVVGTRMPYGMLVQSAFEQAGLPCR FT MCADVPWSQLACALVNAGAGIAIVDEFTVMKNIWPEIAIVPLAEDIPLHISAVHANNRP FT LSRIAAEFIPHLRDVLAESFSKAD" FT misc_feature complement(420638..421258) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.6e-37" FT misc_feature complement(421328..421507) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.1e-16" FT CDS 421653..422885 FT /transl_table=11 FT /locus_tag="BPP0402" FT /product="putative branched-chain amino acid binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3427" FT /protein_id="CAE35986.1" FT /translation="MSRKSWLFRLPALAIAAAALAPATGAAQASDKIRIGMTVSSTGSF FT VLASQSGVRGVEVWVDDVNRRGGIEIKGKKYPVELVKLDDRSDKQMVTRVYERLIVDEK FT VDLVFAPFGSTLTAAAGTVTERLGKYMMVWSAASDDLYKQGFKYMVSGTQMPVSAMLRA FT PMALAGKLGVKKAAILYSDEPFPAGLADGGRAQAAKNGIDVVLYEKYPKGQKDFSTLLQ FT KAKAAGADALVPTSYEGDLISMTRQMKQLDINFPYTFMVYASTPQFQAIGADSNYIFSH FT TNYHPAINWKVNAGLTREQFGKAYDTLFPKAEFPPDFQTALAYGAGALTEEIIKKAGAT FT DAAALKQASMDLSDKVTVMAGPYAIDETGKQLQMPFPVVQLLPGKGMVPVYPEDVAVEK FT AVYPAPAWNKR" FT misc_feature 421653..421739 FT /note="Signal peptide predicted for BPP0402 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.912 between residues 29 and 30" FT misc_feature 421665..421733 FT /note="1 probable transmembrane helix predicted for BPP0402 FT by TMHMM2.0 at aa 5-27" FT CDS 422900..424372 FT /transl_table=11 FT /locus_tag="BPP0403" FT /product="putative amidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3426" FT /protein_id="CAE35987.1" FT /translation="MAGARPGARRFRSYSEEIMSELAFSSLAELARGLEAGRYSAVELA FT RHYLARIARANEALHAYVSVDEAGALRLAQAADARRAAGYALGPLDGLPIAIKDLCEIE FT GQVTTAGSAAWRERRSKVTGTAVRRLLAAGMVVLGKTHMVEFAFGGWGTNPVMGTPRNP FT WDLSHPRIPGGSSSGSGVAVAAGLAPAALGSDTGGSVRIPAALNGITGLKTSAGLISLH FT GAVPLSQTLDSIGPMTRDAYDAMLLVQALAGPDAADPATLGVPAFVYAPPREGGRPLAG FT RRIAVMAEENYPLAVSADASLAVRQAADTLRALGAEVATVATPFDFTRLMHANGRIIAA FT EAYALHRGYIDDAALPLGEFVRARVQSGRAIGAADYIAAMREHAQARAQWRAWMQDYDA FT LLTPSLPFAACRLDEVDEQGTPLAAFSRAGNFLGASGLALPAGFSADGLPVGVQLMGKP FT FDDGLLCGLGVAFQQATDWHLRTPDLRAAGLA" FT misc_feature 423026..424294 FT /note="HMMPfam hit to PF01425, Amidase, score 1.3e-117" FT misc_feature 423299..423322 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 423416..423511 FT /note="PS00571 Amidases signature." FT CDS complement(424394..425044) FT /transl_table=11 FT /locus_tag="BPP0404" FT /product="putative carbonic anhydrase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3425" FT /protein_id="CAE35988.1" FT /translation="MFPKRLTDGYHAFLQGRFHSERSRYEALAEKGQKPEILLIGCCDS FT RVSPEVIFDAGPGEIFVVRNVANLVPPCEPDAESSFHGTSAAIEFAVNGLNVKHIVVLG FT HASCGGIRSFYDDGEPLSKMDFIGKWMSQISPVADRLGPSTGDRATDIKRLELAVVEES FT LRNLMTFPSISSRVERGELELHGTYFGVATGLLYVLDRATGQFAPWLEEDAAA" FT misc_feature complement(424463..425008) FT /note="HMMPfam hit to PF00484, Carbonic anhydrase, score FT 1.2e-39" FT CDS complement(425178..425522) FT /transl_table=11 FT /locus_tag="BPP0405" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3424" FT /protein_id="CAE35989.1" FT /translation="MMKTRLASLAAALLLAATGALAQSLPYGVTLGNLQATRDAAAGVS FT TITGSLSNQGAKRIGRAWVVFALYDSQGREIGRVKEQSIGPIAPGEIWQIRSTTPQPFE FT RFSAIEIKAE" FT misc_feature complement(425457..425522) FT /note="Signal peptide predicted for BPP0405 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 22 and 23" FT CDS 425762..426085 FT /transl_table=11 FT /gene="psiF" FT /locus_tag="BPP0406" FT /product="phosphate starvation-inducible protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0227" FT /protein_id="CAE35990.1" FT /translation="MISRVSKFAACTLVSLFCSTAAWAQASASKELTPQQKRMAECNKS FT ATGKTGDERKAYMSSCLKGEESANKLTPQQQRMKDCNSRASEQALTGEKRKAYMSTCLS FT GKS" FT misc_feature 425762..425833 FT /note="Signal peptide predicted for BPP0406 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.992 between residues 24 and 25" FT CDS complement(426243..427292) FT /transl_table=11 FT /locus_tag="BPP0407" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0226" FT /protein_id="CAE35991.1" FT /translation="MNGMQRWKQRPPGSNWGDFGPDDQLGRLNLITPAEVLKAAQEIRA FT GRSFCLSLPLDLPGGNVLNPRRHPPQLSPTRLQDTPYVNFPLRNLNPDAVDVLSDDQVL FT LSMQYSTQWDSLAHVGALFDADGDGRAELCYYNGYRAGIDIVGPADADHAGCGCNTGGP FT SAALKLGIENLAQHSVQGRGVLLDLARHYGAGRTLVGYKELTQALAADGIEIESGDMLV FT LRTGYAEAVVGMNGKPDADVLHQYGAALDGTDAELLQWITDSGIAAICADNYAVEAYPA FT RERQGPRAMLPLHHHCLFKLGLPLAELWYLKDLAEWLHANGRHRFMLTAPPLRLPHAIG FT SPVTPVATA" FT CDS complement(427289..428113) FT /transl_table=11 FT /gene="catD2" FT /locus_tag="BPP0408" FT /product="3-oxoadipate enol-lactone hydrolase" FT /EC_number="3.1.1.24" FT /note="ortholog of Bordetella pertussis (BX470248) BP0225" FT /protein_id="CAE35992.1" FT /translation="MSACPGRAGPASGITMSYADLSQARLYYVIDGPADAPVLVLSNSL FT GTCADMWARQIPELSRRFRVLRYDTRGHGKSSVPDGEYSFAQLGGDVAELLEHLRIERA FT HFCGLSMGGPTGMWLALERPELIDRLILCNTAARIGSAEGWSARIAAVRQDGLETMAPG FT LVERWLTPQYRAAEPGLVQLLIDMLRRIPDAGYMANCAALRDADLRERVAAIRARTLVI FT SSTHDLAATPQDGKALAAAIPGARYVELDTSHISNWEQPEAFTRALTGFLTE" FT misc_feature complement(427298..427927) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 8.9e-25" FT CDS complement(428114..428410) FT /transl_table=11 FT /locus_tag="BPP0409" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0224" FT /protein_id="CAE35993.1" FT /translation="MPYIIETFDKPGSLAVRQQHRNAHLQFLDQHKHLLLACGAKLDDD FT GKDLGGGLYVVDVDTRAAAEQFIQADPFHLAGLFERVAITRWRKAYVDGTSYL" FT CDS complement(428436..428711) FT /transl_table=11 FT /gene="catC2" FT /gene_synonym="mmlJ" FT /locus_tag="BPP0410" FT /product="methylmuconolactone isomerase" FT /EC_number="5.3.3.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0223" FT /protein_id="CAE35994.1" FT /translation="MLFMVQMQVNLPPDMPAERADKLKADEKALAQQMQRDGKWRHLWR FT VAGRYANVSIFDAADNDELHQMLSALPLFPYMDIQVTALARHPSAI" FT misc_feature complement(428442..428711) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02426, Muconolactone FT delta-isomerase, score 1.6e-60" FT CDS complement(428768..429412) FT /transl_table=11 FT /gene="catJ" FT /gene_synonym="pcaJ" FT /locus_tag="BPP0411" FT /product="3-oxoadipate CoA-transferase subunit B" FT /EC_number="2.8.3.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0222" FT /protein_id="CAE35995.1" FT /translation="MSSKLTRDEIAARVAQDIPEGAYVNLGIGLPTLVANHLPADREVI FT LHTENGMLGMGPAPAKGQEDYDLINAGKQPVTELPGCSFFHHADSFAMMRGGHLDICVL FT GAFQVSQQGDLANWHTGAPDAIPAVGGAMDLAIGAKDVFVMMELQTRDGQSKLVQACTY FT PLTGVRCVSRVYTDMAVFDLRAGQITVTDLFGGTTREQLLALTGLPLKFAD" FT misc_feature complement(428795..429397) FT /note="HMMPfam hit to PF01144, Coenzyme A transferase, FT score 1.1e-50" FT CDS complement(429412..430098) FT /transl_table=11 FT /gene="catI" FT /gene_synonym="pcaI" FT /locus_tag="BPP0412" FT /product="3-oxoadipate CoA-transferase subunit A" FT /EC_number="2.8.3.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0221" FT /protein_id="CAE35996.1" FT /translation="MISKLVATAADALADVPDGATVMIGGFGTAGQPMELIDALLEQGA FT KDLVIINNNAGNGTTGLAALLGAGRVRKIICSFPRQVDSQIFDGLYRAGKLELELVPQG FT NLAERIRAAGAGIGAFFTPTGYGTPLADGKETREINGRQYVLEYPLHANYALIQAERGD FT RWGNLVYRKTARNFGPIMASAARVAVAQVRQVVELGQLDPEAVVTPGIFVKRVVQIDAP FT RGAKEQ" FT misc_feature complement(429439..430086) FT /note="HMMPfam hit to PF01144, Coenzyme A transferase, FT score 7e-95" FT misc_feature complement(430000..430047) FT /note="PS01273 CoA transferases signature 1." FT CDS 430228..431079 FT /transl_table=11 FT /locus_tag="BPP0413" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0220" FT /protein_id="CAE35997.1" FT /translation="MASRLYNGARSERLHFHLLHTGPMVEQVPQQPGDSYVQSFARGLS FT VIRAFGPQRPQMTLSEVAAATGLTRAGARRILLTLASLGYVAQEDRRFTLTPRILELGY FT AYLSATPLWDLALPYMEEVAETTRESCSVSVLDGVDIVYILRLSTHKVMTINLAVGSRL FT PAWVTSMGRVLLAGLPEAEQDRLLDESQIQPYTPATVVDRAELKRILAGVRADGYACVV FT QELEPGLQSVAVPIVDRGGRVIGAMNVSGHANRYSREEMLQAFLPPLRSAAEHINQALR FT RR" FT misc_feature 430504..431064 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 1.2e-64" FT CDS complement(431130..431855) FT /transl_table=11 FT /locus_tag="BPP0414" FT /product="probable short-chain dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0219" FT /protein_id="CAE35998.1" FT /translation="MKPTAYLVTGASSGIGAAIARALLDAGHRVVNIDYRLPADAPQGL FT ASYQADLTDEAQTLAVAREVTEAYDIVGLVNNAGATRPGTADTATLADLDYVVALHLRT FT AMILVQAALPAMRAAGYGRIVNMSSRAALGKPERVVYSATKAGLIGLTRTLAMELGGDG FT ITVNAIGPGPIATELFRNSNPEGAPRTQRIIDSIVVKRLGTPEDVARAAMFFLSPDNGF FT VTGQVLYVCGGTTLGVAPV" FT misc_feature complement(431154..431852) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 1.3e-59" FT misc_feature complement(431388..431474) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT misc_feature complement(431796..431855) FT /note="Signal peptide predicted for BPP0414 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.899) with cleavage site FT probability 0.649 between residues 20 and 21" FT CDS complement(431888..433321) FT /transl_table=11 FT /locus_tag="BPP0415" FT /product="short-chain fatty acids transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0218" FT /protein_id="CAE35999.1" FT /translation="MPPVFRGLSPRGQAPHTTQTQRLTKKYVGSTMNKLTSFFTELMRK FT YLPDPFVFAIALTLLTVLMAFGIEGQPLDQITREWGKGFWSLLAFTTQMAVILAMGYVL FT ATAPLTDRLLDRIVSHVHQPRNAIIVATLVGGVGSYLNWGFGLVIGGVVAKKLALKVKG FT VHYPLIIAAAYSGFTMYGLGLSASIPVLVATPGHPTADQMGVIPLSETIFSLPMLITSL FT VIIVTLPLLNAWLHPKQGEKVVEVDPAIDQGSAPAKAADELTAEDTLASRLNNSRILSL FT LIGLLGIAYVVFYFMDGKSLDLNLINFIILFLGIILLGTPAAYVAKLNEGIKTISGIIL FT QYPFYAGIMAIMAGSGLVATISKVFVDVASPGSLPFWGLISSFVINFFAPSAGGHWVIQ FT GPFMIDAAKEIGSALNQTTMAVMLGNAWNDLVQPFWILPALALSKLKLRDVMGYTVIMM FT LWVGVIHIAAVLAWGYLTH" FT misc_feature complement(join(431897..431962,432128..432193, FT 432239..432304,432344..432406,432437..432487, FT 432620..432685,432746..432811,432875..432940, FT 433007..433072,433112..433168)) FT /note="10 probable transmembrane helices predicted for FT BPP0415 by TMHMM2.0 at aa 51-70, 83-105, 127-149, 170-192, FT 212-234, 278-295, 305-326, 339-361, 376-398 and 453-475" FT misc_feature complement(431906..433231) FT /note="HMMPfam hit to PF02667, Short chain fatty acid FT transporter, score 2.2e-130" FT CDS complement(433341..434405) FT /transl_table=11 FT /locus_tag="BPP0416" FT /product="3-hydroxybutyryl-CoA dehydrogenase" FT /EC_number="1.1.1.157" FT /note="ortholog of Bordetella pertussis (BX470248) BP0217" FT /protein_id="CAE36000.1" FT /translation="MFAYRKQRFFWLRHRKAPYGRDARPAGRRRAARDTPRLHPSEHAM FT DNPIQNLAVVGAGAMGSGIAALFASKGFDVVLIDPMAGALTRAAQVIERQLGVYAPDAI FT APAMQRIRMDAGLEAACSAQLVIEAVPEKLALKRDIFARLDTLCDPQAIFATNTSGLSI FT NDIAQAVTRRDRFVGTHFFTPADVIPLVEVVRNDDTSEQTVARVMGMLRAGGKRPVLVR FT KDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALSGPLEQRDMNGI FT DVHYAIASYLYQDLENRTTPSELLENKVQAGELGAKSGQGFYAWPPERRERVLRDKSAA FT LAELAAWLESRKPV" FT misc_feature complement(433431..433727) FT /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain, score 3.9e-19" FT misc_feature complement(433731..434270) FT /note="HMMPfam hit to PF02737, 3-hydroxyacyl-CoA FT dehydrogenase, NAD binding domain, score 1.8e-60" FT CDS complement(434671..437466) FT /transl_table=11 FT /gene="sphB1" FT /locus_tag="BPP0417" FT /product="autotransporter subtilisin-like protease" FT /note="ortholog of Bordetella pertussis (BX470248) BP0216" FT /protein_id="CAE36001.1" FT /translation="MPPPAVPPQLPEVPAADLPRVRAPLSTYRRPQRTDFVTPAGGPFI FT AKQDKALNTIDLKMAHDQKLRGYRVKVAVVDEGVRSDHPLLNVEKKYGGDYMADGTRTY FT PDPKRQGRHGTSVALVLAGQNTDTYRGGVAPNADLYSANIGTRAGHVSYEAAFHAWSDL FT LGHGIKIFNNSFATEGPEGEQRVKEDRNEYQRAANKQNTYIGRLDRLVRDGALLIFAAG FT NGRPSGRAYSEVGSVGRTPRVEPHLQRGLIVVTAVDENGRLETWANRCGQAQQWCLAAP FT STAYLPGLDKNNPDSIHVEQGTSLSAPLVTGAAVLVQDRFRWMDNDNLRTTLLTTAQDK FT GPYGVDPQYGWGVLDVGRAVQGPAQFAFGDFVARVTDTSTFGNDISGAGGLVVDGPGAL FT VLAGANTYAGRTTIKRGTLDVFGSVTSAVTVEPGGTLTGIGTVGTVTNQGTVVNKEAGL FT HVKGDYSQTAQGLLVTDIGSLLDVSGRASLAGRLHVDDIRPGYVGGDGKSVPVIKAGAV FT SGVFATLTRSPGLLLNARLDYQPQAVYLTMRRAERVHAVAQRAADDGRRASVLAVAERL FT DAAMRELDALPESQRDAAAPAAAIGRIQRVQSRKVLQDNLYSLAGATYANAAAVNTLEQ FT NRWMDRLENHLAQTGGERVAAIAEYRHGQLRWRPDGLQGRQRGNGIMLGLAREVSAGLS FT LAAALTHSRTHWDESSGAPARDNAAMTTPGVLLGARRAWDDGWFVQGALGYSRYRNQAT FT RHISLGDAGHTVGATARGHVWQADAGLGRQWTLAPGHTLAPRAGLQLTHLHQQGFSESG FT AQGLGLRARALTRTVPTLWAQLQSRHAFMLGATPMTAQLQLGVWHDLRARRYAASGGFA FT GLAQDQGASGYWPVPRTRVQGALGLRAEFAPGLALGLGYTGQLATHWVDHQLSASLTYR FT Y" FT misc_feature complement(435388..435444) FT /note="PS00095 C-5 cytosine-specific DNA methylases FT C-terminal signature." FT misc_feature complement(436384..437337) FT /note="HMMPfam hit to PF00082, Subtilase family, score FT 1.9e-10" FT misc_feature complement(436531..436563) FT /note="PS00138 Serine proteases, subtilase family, serine FT active site." FT CDS complement(438072..441020) FT /transl_table=11 FT /gene="ppc" FT /locus_tag="BPP0418" FT /product="phosphoenolpyruvate carboxylase" FT /EC_number="4.1.1.31" FT /note="ortholog of Bordetella pertussis (BX470248) BP0215" FT /protein_id="CAE36002.1" FT /translation="MAAYNAPVSNCQFRLTHILPIPQRQGAPTDPFQMNAIRQQSDSAE FT PLRHDIRLLGRCLGEVIQACEGKRVYDTIETLRRTAVRFRRAGDPADDKLLQARVKQLR FT GNDPNSVARAFSYFLHLSNIAEDRDQNRRQRDRALAGAGPERGSLRQAIESLKAQGVNN FT ARIRRLLSEACVMPVLTAHPTEVQRKSTLDVHREISSLLVQRERELTADELSELDLALI FT GQVATLWQTRMLRYTRLTVADEIENALSYYRSTFLNVIPRVYGDLARLLNREPVKPFTP FT PPPPLEPFLRMGSWIGGDRDGNPNVDAATLERALLRQATVLFEHYLQEVHALGAELSAS FT TLLIEADPALLALADAGGDDSPHRRDEPYRRALIGIYARLAATARHLTGQELARRATVP FT AAPYDTPDALAADLAVIAASLSAHHGAPIARLRLSGLQQAVTVFGFHLATVDLRQSSDV FT HERVLAELFARAGDGIDGQAVDYLALDEAARVAVLRRELAHARPLASPWIAYSEETASE FT LAVLRAAAAGRARYGRQAVLQSIVSHTETLSDLLEVLVLQKEAGLIAPPGETIAPGDGL FT MVVPLFETIPDLQRGPEIMAAWLDLPEVRQRVRLAQGDTQEVMLGYSDSNKDGGFLTSN FT WSLYQAERALVDVFSARSVRLRMFHGRGGSVGRGGGSSYDAILAQPPGTVAGQLRLTEQ FT GEVIQSKYKDAEVGRWHLELLVAATLESSLAPQAAATSAEDAHMQQHAPAMSFMSELAQ FT RTYRGLVYDTPGFADYFFAATPISEIAGLNIGSRPASRKKGQHIEDLRAIPWGFSWAQC FT RLMLTGWYGMGSAIEAYLETGAQGAPRSRRARLAQLREMASDWPAFRTLLSNMEMVLAK FT SDLAIAAGYAQLVPRRGLRERVFGAITAEHGRTLAMLRLLTRRELLADNPGLMASLRER FT FAYIDPLNYLQIELIKRHRAAQRRAGDDADIRVPRAIHLTINGIAAGLRNSD" FT misc_feature complement(438078..440924) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00311, Phosphoenolpyruvate FT carboxylase, score 7.6e-62" FT misc_feature complement(439131..439169) FT /note="PS00393 Phosphoenolpyruvate carboxylase active site FT 2." FT misc_feature complement(440454..440489) FT /note="PS00781 Phosphoenolpyruvate carboxylase active site FT 1." FT CDS 441077..441811 FT /transl_table=11 FT /locus_tag="BPP0419" FT /product="Conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0214" FT /protein_id="CAE36003.1" FT /translation="MFRCLMQNHQRRALVLFSGGQDSTTCLAWALERYAHVETLGFDYG FT QRHRVELDARQVVLRELRANFPDWAQRLGDDHLLDLGILAQVGDTAMTSDREIEMQANG FT LPNTFVPGRNLLFLTLAAALGYRRQLDVLVGGMCETDFSGYPDCRDDTIKSQQVTLGLG FT LGTRVTIETPLMWLDKAQTWELADRLGGQALVDMVIEHSHTCYLGERGQRHDWGYGCGH FT CPACALRKNGWERWVAGAAYAD" FT CDS complement(441850..442398) FT /transl_table=11 FT /locus_tag="BPP0420" FT /product="putative acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0213" FT /protein_id="CAE36004.1" FT /translation="MTASMPTAILIRDSRDADLPAIAAIYAHHVLHGTASFELEPPGLE FT ALRERRAAVLAHGLPYLAAECGGEIVGYAYATPYRPRPAYRHTVEDSVYVRAGHAGQGI FT GGKLLAALIERCAAGGWRQMLAVVGDSANTASVALHARHGFDTIGTFRSVGYKHGQWRD FT TVLMQRALGEGDATPPGRP" FT misc_feature complement(441961..442215) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 7.1e-15" FT CDS 442553..443452 FT /transl_table=11 FT /locus_tag="BPP0421" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0212" FT /protein_id="CAE36005.1" FT /translation="MNQVEMTEFPVGKPQEALYGVASTPDGALWFTLAKGNAIGRLSPD FT GAVSRFPLPHTDGQPTTITCGPDGRPWFTLSSANAIGRLAPDGALRMFELPRPASRPFG FT IAGGHDGCLWFAEMAGDRIGRITIDGDIEEYDLPVKGGYPSCMAAGRDGLMWFTLNQAG FT AVGSISATAAPRIFPLGAADAAPVGIASDAQGALWIAQAGNGAIVRFDAGGRITEFPLH FT SRAARPHAIAADAAGNLWFTEWGANRIGRISEAGDLAGYELAAPGSEPHGIAIDPHGCV FT WAALETGRLVRLQASPRD" FT CDS complement(443477..444103) FT /transl_table=11 FT /locus_tag="BPP0422" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0282" FT /protein_id="CAE36006.1" FT /translation="MYTPPAYEERDRHKLHAWMRDWSFATLVTHGDQGLQATHLPFLLD FT PLRGPHGTLISHLARRNPQAADIQAGAQAMVVFQGPHAFISPSWYRNRQTFPTWNYAAI FT HAHGQAAAIEDAQRIRAILTRTVQTYDTPLGGEWTFEAMPEDLIVPRLSAIIALEIPIA FT RLEGKVKLNQDKSPEDRAGVLAALENRRDPGSRGVARMMREALLA" FT CDS complement(444126..445052) FT /transl_table=11 FT /locus_tag="BPP0423" FT /product="putative 2-hydroxyacid dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0283" FT /protein_id="CAE36007.1" FT /translation="MTLIAIASQAPDLLRLPPALRALDPSIDVVVWPDPRCAAAEVAVC FT WAPPPGALAAMPALRLLHTVSAGVDNVLAAPGLPDVPLCRVVDAELNLDMAQYILWGAL FT YFSRGFDQARASQAAGQWRRPDRYGQPPLRVGLMGLGAIGMAALPLLRAAGLPVTGWSR FT TAKRIDGVATHHGPDGLAPFLAASDILVNLLPLTESTRGLLCAATFAGLPPGAALIHCG FT RGAHLVEADLQAALADGRLRGALVDVYAQEPLPPQHPLWRCPSLVITPHMASVAPFERV FT AGQILENLRRLNAGEALMNLVDPRRGY" FT misc_feature complement(444240..444767) FT /note="HMMPfam hit to PF02826, D-isomer specific FT 2-hydroxyacid dehydrogenase, NAD binding domain, score FT 2e-11" FT CDS complement(445061..446647) FT /transl_table=11 FT /locus_tag="BPP0424" FT /product="probable extracellular solute-binding protein, FT family 5" FT /note="ortholog of Bordetella pertussis (BX470248) BP0284" FT /protein_id="CAE36008.1" FT /translation="MNYRHIRGTLRALLLASAAIATLAGAPAQAQTRGGTLRAIVHPEP FT PILITAINSQSPTQFVGGKIFQGLLTYDADLKPQPSLARAWRISPDGLVYTFELQPDVK FT WHDGKPFTADDVVFSIDKLVREVHPRTKLILNAYVESVRAVDPATVEIRLKEPFAPFIS FT MFETGTMPMMPKHLYEGTDYRNNPANQHPVGTGPFKFKEWVRGSHIALVRNDEYWKPGL FT PYLDGIRFQVIPDSASRAVAFEQANVDLVYGDDVDSVDIKRLRALPGVQYTTKGWEMFG FT PMGLMVLNQREAPFDNVLVRRAVMHALNRDFIVKNIFFGMGRVPTGPFSSATLFHDKDL FT PVYDYNIKKARALIKESGVDVGQRTLRLLAFPYGANWERVGEYTRQTLEQLGFKVDIQA FT TDAGGWASRMSQWDFDISFNHPYQYGDPVLGVQRLYLSSNRVKGTPFGNNQGYHNPKAD FT ALWQQAARSVDPAERQKLYSELQRILVDDAALGWLLEIDYPTLYRGNVHNLVTSAIGVK FT ESFDTVYLDAR" FT misc_feature complement(445073..446617) FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5, score 1.1e-61" FT misc_feature complement(446558..446647) FT /note="Signal peptide predicted for BPP0424 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 30 and 31" FT CDS complement(446644..447648) FT /transl_table=11 FT /locus_tag="BPP0425" FT /product="putative acetyl esterase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0285" FT /protein_id="CAE36009.1" FT /translation="MTTAALPYPLDPQIQRFVERMQADSAAHPRRDLVPVEQARAISEA FT VRRPWAEGGPQMARTREIHAPTPHGPVRLRVYTPRAARPGPAMLYVHGGGWVLFSLDTH FT DRLMREYAERAGLTVIGVDYTRAPEARYPRAIEEIVGVIDWLDANGAELEVDRARLCIG FT GDSAGANLSVAACLTLRERGAAPLAGMVLNYGVYDANLFRDSTVKYGGGEYLLSTQQMV FT WFYWNYLRAGDDPRDPRISPVHADLRGLPPAFMAITELDLLHDANQDMAARLREAGVDV FT QAKVYPGTVHSFLEAVSLAQVSVAAFDDTAAWLRAVLRPAAAAAAIHTGEHQP" FT CDS 447848..448708 FT /transl_table=11 FT /locus_tag="BPP0426" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0286" FT /protein_id="CAE36010.1" FT /translation="MPAIAKDPSPRRAPAFPAPRQLSYLDLLTRQVQSAPGEMAALATD FT YPAGTVSSLHRHDRGQLLYAMSGVVTVITDLGSWVVAPGQALWIAPGVLHQTRGFESVA FT IRSLYIDPAHADGLPAACQTIQVSPLLQALILEAVKLPPQDAGSERAGHIRALILDEMR FT HVCAAPLYVPMPRDARLARICQALLRDPANAGSLDAWAAYGGLSRRNLTRLFRAQTGAS FT FNAWRQKVLLMEALARLSRGEQITAVALDLGCGSPGAFTAMFRRALGVSPREYFRWTEA FT PQRAD" FT misc_feature 448394..448531 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.041" FT misc_feature 448550..448678 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.00024" FT CDS complement(448740..449741) FT /transl_table=11 FT /gene="leuA" FT /locus_tag="BPP0427" FT /product="2-isopropylmalate synthase" FT /EC_number="2.3.3.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP0287" FT /protein_id="CAE36011.1" FT /translation="MLAHPATKYRPFAPFAADHAERAWPARRPAAAPIWMSTDLRDGNQ FT ALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSVSQTDFDFVRKLIDERRIPDDVTIEAL FT TQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRAL FT ADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTAN FT VYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGERTG FT NVDLVALALNLERQGIASGLDFRDMAALRACVSECNQLPIDVFHPYAWLDQD" FT misc_feature complement(448773..449627) FT /note="HMMPfam hit to PF00682, HMGL-like, score 2.1e-82" FT misc_feature complement(448974..449015) FT /note="PS00816 Alpha-isopropylmalate and homocitrate FT synthases signature 2." FT misc_feature complement(449574..449624) FT /note="PS00815 Alpha-isopropylmalate and homocitrate FT synthases signature 1." FT CDS 449812..450576 FT /transl_table=11 FT /locus_tag="BPP0428" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0288" FT /protein_id="CAE36012.1" FT /translation="MNPLEKDIAESKPQLAPHEHASAPVTALAVDYRDGQHVPRHRHRR FT AQLLYAIEGVMTVQAEAGIWVAPPTRGIWLPAGMAHSIRMHGQPRVRTVFVAPRAAGHL FT PDRCCVLAVGPLLRELIVAATRVPPDWRPGGRDARLMALLLDEIRLEPALPLHLPQPDE FT PRVARVCRGILSEPGAARGLAEWAAELGVTAKTVQRLFVRHTGMTFGRWRQQAGLLWAM FT QRLAEGVRVLDVALELGYDSPSAFAARREPPA" FT CDS 450654..452513 FT /transl_table=11 FT /gene="ilvD" FT /locus_tag="BPP0429" FT /product="dihydroxy-acid dehydratase" FT /EC_number="4.2.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP0289" FT /protein_id="CAE36013.1" FT /translation="MPHYRSRTSTHGRNMAGARALWRATGMKDGDFGKPIIAVVNSFTQ FT FVPGHVHLRDLGALVASEIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSV FT EYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPVVFVSGGPMEAGKITSPVDGKVIA FT KLDLVDAMIKAADPNVSDAEAEEVERSACPTCGSCSGMFTANSMNCLTEAIGLALPGNG FT TIVATHAWRKGLFEQAGRLVVELCRRYYEQDDASVLPRSIATKSAFENAMTLDVAMGGS FT TNTVLHLLAAAQEAGVDFTMSDIDRISRRVPCLCKAAPATDKYHIEDVHRAGGILGILG FT ELGRADLLDLSCGNVHSGTLGEAINQWDINGGAGEAAQKFFRAAPGGIPTTVAFSQDAT FT FLTLDMDRQTGCIRDKAHAYSQDGGLAVLYGNLAEKGCIVKTAGVDESQWVFTGRARVF FT ESQEDAVEGILGDRVQAGDVVIIRYEGPKGGPGMQEMLYPTSYLKSKGLGKTCALFTDG FT RFSGGSSGLVIGHASPEAAEGGTIGLVEEGDTIEIDIPNRRIHLAVGDTVLAERRAAMQ FT ARGEQAWQPVDRERVVSQALRAYAALATSADRGAVRDLSQLKR" FT misc_feature 450753..452492 FT /note="HMMPfam hit to PF00920, Dehydratase family, score 0" FT misc_feature 451017..451049 FT /note="PS00886 Dihydroxy-acid and 6-phosphogluconate FT dehydratases signature 1." FT CDS complement(452572..453909) FT /transl_table=11 FT /locus_tag="BPP0430" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0292" FT /protein_id="CAE36014.1" FT /translation="MNLYRLLKQREADQKPLRVALIGAGKFGSMFLSQVQRTPGMRLVA FT VADLAPDRARAALTRVGWPAAALNADTIHHAVKTGKVYFSDDVRSVSVDPEVEIVIDAT FT GQAAAGIEHVLTCCEYGKHIIMVNVEADALAGPLLARRAREAGIVYSLAYGDQPALICE FT MVDWARASGFEVVAAGKGTKYLPEFHTSTPDTVWPYYGFTDEMVAAGDFNAQMFNSFLD FT GTKSAIEMAAVSNATGLLPSPTGLHFPPCGVDDLARVLRPREEGGMLHHRGQVEVVSSL FT ERDGRPVFRDLRWGVYVTLAGDSDYVRRCFKEYGLVTDPSGNYSAMYKPYHLIGLELGI FT SVASVGLRREPTGSPAGWHGDVVATAKRDMAAGQELDGKGGYTVYGRLMPARDSVADGC FT LPLGLAHNVRLKHPVRQSQPIRWSDVEYDERSPAVQFRRLMEQTFA" FT CDS complement(454039..454599) FT /transl_table=11 FT /locus_tag="BPP0431" FT /product="putative 5'(3')-deoxyribonucleotidase" FT /EC_number="3.1.3.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP0294" FT /protein_id="CAE36015.1" FT /translation="MLILLDQNGVLADFEHAFIDAWRKRHPDIEPVAFEDRKSFHIRED FT YAPELRGLAEAIYTAPGFIRDLPPVPGAIEAFRELLALGMDVRICSSPLMQFENYVAEK FT YLWVERHLGREATQRLILTRDKTLVQGDLLIDDRPVITGAARPRWRHIIYDAPYNRDQT FT DRPRLDWRNWRNVLAGELYRSDA" FT CDS complement(454659..455246) FT /transl_table=11 FT /locus_tag="BPP0432" FT /product="putative 2'-5' RNA ligase" FT /note="Similar to Escherichia coli 2'-5' RNA ligase LigT FT SWALL:LIGT_ECOLI (SWALL:P37025) (175 aa) fasta scores: E(): FT 5.4e-10, 34.3% id in 172 aa, and to Pseudomonas aeruginosa FT 2'-5' RNA ligase PA2861 SWALL:Q9HZY3 (EMBL:AE004712) (182 FT aa) fasta scores: E(): 1.4e-10, 38.69% id in 168 aa. FT Possible alternative translational start site" FT /protein_id="CAE36016.1" FT /translation="MLRSSRASNDNARMAHPPTEAAIAPPRLFFALWPDPATAARLADW FT AAHAQLAYGGRVMRTDTLHLTLAFLGAATPAQAAELCAATAARRIAPATLALARYGLFA FT RQRIVWAGPQQADAALAALHDDLWTWLRALGWPAPQQGFQPHVTLLRNVDAHAAAPAPP FT PPVAWRYDHYALVQSQPQHGRASYRVLARTAA" FT CDS complement(455434..456945) FT /transl_table=11 FT /locus_tag="BPP0433" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa outer membrane FT protein precursor involved in siderophore transport and FT resistance to antimicrobial agents, OprM or OprK FT SWALL:OPRM_PSEAE (SWALL:Q51487) (485 aa) fasta scores: E(): FT 8.6e-40, 37.6% id in 476 aa, and to Ralstonia solanacearum FT putative outer membrane drug efflux lipoprotein RS02156 FT SWALL:Q8XPN9 (EMBL:AL646086) (483 aa) fasta scores: E(): FT 2.4e-56, 41.71% id in 489 aa" FT /protein_id="CAE36017.1" FT /translation="MKHILPRGSALLAMLLVLAGCAVGPQYDKPAVAVPAAYKEAAALP FT AGQAGAWQAAQPAEDALRGQWWKIFGDPALDALEDEAQRANHSLQAAAARLAQARALQR FT DARSARFPRVDAGFGPTRQRPSPASQGLEPEASTQASTLWRGQLSVAYEADLFGRVSAT FT VDAATADSQQSEALYRSVLLALQADVAQGYFLIRELDAELRIYRQTVELRGETLKLIQR FT RYDAGDISELDLARARAELESARAEALGVERRRAAAEHALAVLLGKTPAEFAMPAQPLA FT RVAVNVPAGLPSSLLERRPDIAAAERAMAAANARIGAARAAFFPRLDITGAAGFESAEL FT GQLFEWSSRTFLLGPLVGAALSLPIFDGGRRQASLDRARAVYEEDVANYRQTVLDAFRE FT VEDNLANLRILADQTQAQDAALDASARAARLSHTQYREGSISYLDVIEADRTVLLQQRV FT AVQLDGERARSAVQLVRALGGGWDTPIPPPSQESVSAGKRAAANS" FT misc_feature complement(455479..456084) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 3.9e-46" FT misc_feature complement(456112..456723) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 1.2e-41" FT misc_feature complement(456880..456945) FT /note="Signal peptide predicted for BPP0433 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.956) with cleavage site FT probability 0.386 between residues 22 and 23" FT CDS complement(456960..460121) FT /transl_table=11 FT /locus_tag="BPP0434" FT /product="putative multidrug-efflux system protein" FT /note="Similar to Escherichia coli probable aminoglycoside FT efflux pump AcrD SWALL:ACRD_ECOLI (SWALL:P24177) (1037 aa) FT fasta scores: E(): 8e-155, 42.39% id in 1052 aa, and to FT Ralstonia solanacearum probable transmembrane FT multidrug-efflux system lipoprotein transmembrane RS02621 FT SWALL:Q8XQV5 (EMBL:AL646082) (1069 aa) fasta scores: E(): FT 0, 77.45% id in 1051 aa" FT /protein_id="CAE36018.1" FT /translation="MNISRFFIDRPIFAGVLSVVVLLAGLLAMFQLPIAEYPEVVPPSV FT VVRAQYPGANPKVIAETVASPLEEAINGVEDMLYMQSQANSDGNLTLTVNFKLGVDPDQ FT AQQLVQNRVSQALPRLGVTTIKSSPTLTLVVHLISPNDRYDITYLRNYAIINVKDRLAR FT LNGVGEVAVWGSGNYAMRVWLDPQKVAQRGMTASEVIAAIREQNVQVAAGVIGASPTQG FT DVPLQLNVNTRGRLQTEQEFRDIILKTSPDGGVTYLADVARVELDAQEYGLRSLLDNRQ FT AIGMGIMQAPGANALDVADQVRATMQELAQDFPPGVEYRIEYDPTQFVRASIKAVVHTL FT LEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFALLLMFGYSINALSLFGMVLAIG FT IVVDDAIVVVENVERNISAGLTPREATYRAMREVSGPIIAIALTLCAVFVPLAFMTGLS FT GQFYKQFAMTIAISTVISAFNSLTLSPALSALLLKGHHDKPDWLTRGMNRWLGGFFNGF FT NRVFGRASESYATGVSGVIRRKASAMGVYALLLALTVGVSYLVPGGFVPAQDKQYLIGF FT TQLPNGASLDRTDAVIRRMSDIALAEPGVQSAIAFPGLSINGFTNSSSAGIVFVTLKPF FT DERKPAALSGDAIAASLNQKFGAIKDAYIAVFPPPVMGLGTLGGFKLQLEDRAALGYAE FT LDKAAQAFLAKAAQTPELGPSFSSYQINVPQLDVDLDRVKAKQLGVPVTDVFDTMQIYL FT GSVYVNDFNRFGRVFQVRAQADAPFRAHPDDILQLKTRNDAGDMVPLSSLVQVRQSFGP FT EMVVRYNGYTAADINGGPAPGYSSDQAQAAAERVAAETLPRGVKFEWTDLTYQQILAGN FT AGLWVFPISVLLVFLVLAALYESLTLPLAVILIVPMSILAALTGVWLTGGDNNIFTQIG FT LMVLVGLSAKNAILIVEFARELELQGMAPREAAIEASRLRLRPILMTSIAFIMGVVPLV FT LSSGAGAEMRQAMGVAVFFGMLGVTLFGLFLTPVFYVLLRALGARRLHAAAPHPAPVTA FT PHPEH" FT misc_feature complement(457035..460115) FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score FT 0" FT misc_feature complement(join(457038..457103,457149..457214, FT 457278..457343,457359..457424,457446..457502, FT 458421..458486,458649..458714,458760..458825, FT 458889..458954,458970..459035,459057..459113, FT 460020..460085)) FT /note="12 probable transmembrane helices predicted for FT BPP0434 by TMHMM2.0 at aa 12-34, 336-355, 362-384, 389-411, FT 432-454, 469-491, 545-567, 873-892, 899-921, 926-948, FT 969-991 and 1006-1028" FT CDS complement(460138..461319) FT /transl_table=11 FT /locus_tag="BPP0435" FT /product="HlyD family secretion protein" FT /note="Similar to Escherichia coli acriflavine resistance FT protein A precursor AcrA or MtcA or Lir SWALL:ACRA_ECOLI FT (SWALL:P31223) (397 aa) fasta scores: E(): 3.6e-28, 30.64% FT id in 385 aa, and to Ralstonia solanacearum probable FT transmembrane multidrug efflux system transmembrane protein FT RS02620 SWALL:Q8XQV6 (EMBL:AL646082) (438 aa) fasta scores: FT E(): 6.4e-81, 62.46% id in 381 aa" FT /protein_id="CAE36019.1" FT /translation="MIVSRHRIALLAVVATLLAAGGAYSLLRSPGGPAQAQAVPAAAPV FT DVAPALGRTIVDWQRYSGRLEAIDRIDIRPLVSGTLTEVHFQDGSLVKKGDVLFTIDPR FT PYVAEVDRARAALAAARARVSYTAADLARGQRLLAENAIARRDFEEKQNAAREAAANLQ FT GAQAALESAELNLGYTRIAAPVDGRVSRAEVTVGNVVAAGAASVPLTTLVSVARMYASF FT DVDEQTFLKYVNPARNGTVPVQLGLANEDGYSREGRVQSVDNRMDPTSGTIRMRAVFDN FT ADGSLVPGLYARIRLGGGAPRDAVLVDERAIGTDQNKRFVLVLEEGNRTAYREVLLGAN FT VGPLRVIENGLHAGERIVVNGLQRVRPGDVVAPSQVSMDTAPGAVKTAAAALR" FT misc_feature complement(460243..461115) FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein, score 9.9e-41" FT misc_feature complement(461212..461319) FT /note="Signal peptide predicted for BPP0433 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 36 and 37" FT CDS 461563..462585 FT /transl_table=11 FT /locus_tag="BPP0436" FT /product="LysR family regulatory protein" FT /note="Similar to Burkholderia cepacia putative FT transcriptional regulator CeoR SWALL:Q8VL17 (EMBL:AY008288) FT (334 aa) fasta scores: E(): 8.4e-77, 60.24% id in 322 aa, FT and to Ralstonia solanacearum probable transcription FT regulator protein RS02618 SWALL:Q8XQV8 (EMBL:AL646082) (315 FT aa) fasta scores: E(): 8.9e-67, 57.42% id in 303 aa" FT /protein_id="CAE36020.1" FT /translation="MDRFQAMQVFVRVVEANSFTRAADALVLPRTTVTTVIQGLERHLG FT VRLLNRTTRRISLTPDGAAYYKHATRILAEVEETEACFQDAAARPQGRLRVDVPPCIGR FT LVLIPALCEFHTRYPDIELVIGMGDRRVDLVQEAVDCVIRSGELEDSSLVARRIGTFQT FT LTCAAPSYLARKGMPHTLQALAEHQAVHYFSATGRNCSWDFVVDGKETLVDVPGVVSVN FT DLSAHLTCGLQGFGLIQTARYIALPHLQSGDLIEVLPQWKPKPVPMSLLYLQSRQLSPK FT VRVFSDWVAELFARCPLLSGRTEREGEMEQCQVEKAELTPAAAAAARQRMPSEAPEFVM FT " FT misc_feature 461572..461751 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.2e-18" FT misc_feature 461614..461706 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 461821..462444 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.3e-43" FT CDS 462794..463897 FT /transl_table=11 FT /locus_tag="BPP0437" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3604" FT /protein_id="CAE36021.1" FT /translation="MHQPVLPAFLIARWLLLLVLLAGIYFLSGFLVPALAALIIGLATW FT PLFQRLVRAFGGRTTLAATLALVAVIVILVVPLSLALSYAIKEAGNFFAWALAANKHGV FT DVPAWIMSLPMVGERLAEYWRTYLGEPHALGALVEIVSGEHLGNIYRMVLSATGNAFQL FT LLTVLFMLITLFFVYKDGTRMVGQLDILGERVLPARWQRFSRVVPATVSSTVTGMCLIA FT LGEGVVLGLAYWVAGVPSPVLLGVITGFMALVPGGAPLSFTLVSLYLVGSGHLVAGIGL FT FVWGTVELFIVDKTLRPRLVGGPVKLPFLPTFFGLVGGVKTMGIVGLFVGPVLMALLVA FT IWREWVRNVERERDQSILNPEGEEPAA" FT misc_feature 462794..462901 FT /note="Signal peptide predicted for BPP0437 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.993) with cleavage site FT probability 0.983 between residues 36 and 37" FT misc_feature join(462806..462874,462884..462937,462974..463042, FT 463259..463327,463424..463492,463520..463588, FT 463601..463669,463760..463819) FT /note="8 probable transmembrane helices predicted for FT BPP0437 by TMHMM2.0 at aa 5-27, 31-48, 61-83, 156-178, FT 211-233, 243-265, 270-292 and 323-342" FT misc_feature 462824..463831 FT /note="HMMPfam hit to PF01594, Domain of unknown function FT DUF20, score 1.7e-28" FT CDS 463984..464748 FT /transl_table=11 FT /locus_tag="BPP0438" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3605" FT /protein_id="CAE36022.1" FT /translation="MSAALVAQQVATLREQGFVVVRNFASPPVRQALRELALQHLAQTV FT DPVEYEADLKYPGAPSSRLAAGGQTVRRLLDAYGRDQRFRDWATQAAIGAFLRAYFQDT FT PVLSTVHHNCIMTKHPAFGSLTGWHQDIRYWSFSDDDLVSCWLALGDERVDNGGLYFVP FT GSHTASFMPEQYDARKFFRDDLPQNQEWIGRAVCPELQAGDVVFFHCRTLHAARQNATD FT TVKLSLVHTYHPASCHPLPGTRSAGSPGVPLP" FT CDS 464870..466060 FT /transl_table=11 FT /locus_tag="BPP0439" FT /product="putative potassium channel protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3606" FT /protein_id="CAE36023.1" FT /translation="MIRLRNFLRRIGRYFPPNWWLAALVAIDGYLFVRPVLGRAVDYPM FT DYWLSFDSWRDAMDAVGLLQIPRVILGAGLLLMAAGLVLKARIAWAFSLVLLGAIGVVA FT GWDGGHGLLLAYTGVLIAALVCFWRRFDRASLAAGSLFAVISITSLLIYAVFGTLYLGA FT EFSPKVESLATAFYFSIVSMSTVGYGDITPQTTAARLFAASIIILGITVFATSISAIAG FT PVIGGNLKRLVRGRISHAMRKHHIIIAGATPLAQSVYAGMRERGNNVTVVVAPGIAHNY FT PEDADLVTGDPSNTAVLAEAGAAHARYVLALRDDDADNAFIVLAAKEVAGPDTKTVAVA FT NTAMHLAKIRRVQPDMAFSLQLLGAELLARTLSGETIDNALITDLFFTKATPSSAA" FT misc_feature 464924..465529 FT /note="HMMPfam hit to PF00520, Ion transport protein, score FT 2.8e-07" FT misc_feature join(464924..464992,465050..465118,465131..465187, FT 465200..465253,465272..465340,465383..465442, FT 465479..465547) FT /note="7 probable transmembrane helices predicted for FT BPP0439 by TMHMM2.0 at aa 19-41, 61-83, 88-106, 111-128, FT 135-157, 172-191 and 204-226" FT misc_feature 465602..465949 FT /note="HMMPfam hit to PF02254, TrkA-N domain, score FT 3.3e-09" FT CDS complement(466068..466463) FT /transl_table=11 FT /locus_tag="BPP0440" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0518" FT /protein_id="CAE36024.1" FT /translation="MPASTAPARYLAPDTLARPGGHYSHACVANGMVYVSGQLPIGPDG FT TKLADAPFEAQARQVLDNVAAALAAAGSGIDRLVQVRVYVDSVENWPAFDAIYAEWAGA FT ARPARAVVPTGPLHYGFKVEVEAVALA" FT misc_feature complement(466074..466421) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01042, YjgF family, score 6.3e-33" FT CDS 466633..467334 FT /transl_table=11 FT /locus_tag="BPP0441" FT /product="probable glutathione S-transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0519" FT /protein_id="CAE36025.1" FT /translation="MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLDDMR FT RRRDTPPFAPPYLVADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTA FT EAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWS FT YADLSLYHVVEGLLHAFPRRMRTLVHRYPRLMALHARVAELPELRGYLASDRRLPFGDG FT IFRHYPELDGA" FT CDS 467598..468458 FT /transl_table=11 FT /locus_tag="BPP0443" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0520" FT /protein_id="CAE36026.1" FT /translation="MIPRNAKLAAGAGVLFVLILMLAFSSWFQVDQGERGVVLRNGKLV FT RVSEPGLDFKTPFIDSVSTVSVRDHTFIFENLEAYSYDQQPATLRVSVTYRVPAEHVAE FT LYAEYGTISNLQMRVLERKTPDAVKNVFGRYTAVRAIQERQKLGVDVNAAVLSAMDGAP FT VQIVGVQVEEVGFSKAYEHSIEQRMLAQVQIETTRQQKETAMITAEIQVVKAKAEADAR FT RQQFTAEADGIRLRGEAEAASIRAKAEALAANTNLVSLNAVEKWDGVLPATQVPGAALP FT FIGIK" FT misc_feature 467598..467672 FT /note="Signal peptide predicted for BPP0443 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.781 between residues 25 and 26" FT misc_feature 467673..468266 FT /note="HMMPfam hit to PF01145, SPFH domain / Band 7 family, FT score 3.3e-20" FT CDS complement(468534..468884) FT /transl_table=11 FT /locus_tag="BPP0444" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0521" FT /protein_id="CAE36027.1" FT /translation="MRRISMSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQD FT GIASVQKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSN FT APGAPTKDQTQA" FT CDS complement(469010..470095) FT /transl_table=11 FT /locus_tag="BPP0445" FT /product="putative metal-activated pyridoxal enzyme" FT /note="ortholog of Bordetella pertussis (BX470248) BP0522" FT /protein_id="CAE36028.1" FT /translation="MARMQHNIARMQDRMNGLGVSLRPHVKTSKCTPVALAQLAAGARG FT VTVSTLKEAEQFFAAGIADILYAVGMAEHRLPAALALRRRGCDLKIITDNAESARTIAD FT FGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALHEGGMRLGGVMTHAGSSYDLD FT TPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTPTALSAAQLQGVTEVRAGVYV FT FFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDAGWMAMSRDRGTQKQKQDFGY FT GQVCTADGAPLAGYTLIGANQEHGIMAGGPAGEDVTTRFPVGMRLRILPNHACATGAQF FT PQYHALEADGGLQAWERAHGW" FT CDS complement(470185..470844) FT /transl_table=11 FT /locus_tag="BPP0446" FT /product="probable haloacid dehalogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0523" FT /protein_id="CAE36029.1" FT /translation="MSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEY FT LRLAYGCGRYVPYGQLVRDAARATGLPDGAPAALEANWHELPVWDDARSLLRALRPHCK FT LAVVTNCSRDLGHQAAGLLGVDWDAVVTAEEAGFYKPDPRPYRMALQALQVPAGDAAFV FT AGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAAALPWLQAFRPAVR" FT misc_feature complement(470287..470817) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase, score 9.6e-12" FT CDS 470936..471844 FT /transl_table=11 FT /locus_tag="BPP0447" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0524" FT /protein_id="CAE36030.1" FT /translation="MLRIEDLQLAAALAQAPSLSAAARALNVTPPALSMRLRKLEAGLG FT LALAVRSARRLSLTPEGERLAREAAALLAQLQALPESLRRDDSRLTGTLRVAAPFGYGR FT RHIAPVLARLAQRHPELRVQLDLRETPWPDHQDADAVVHIGAVRDSSWVTRRLADNERW FT LCASPQYLQDHGMPREPRDLLHHRCICIRENDEDASLWRFRRADAGAAGRKAAETVRIA FT PAYVSNDGNVARAWAEQGLGLVVRSQWDAEGAVARGALVRVMPQWQLDSAPVMLLVPGR FT KGRSARVKALLECFDEQAGHA" FT misc_feature 470936..471004 FT /note="Signal peptide predicted for BPP0447 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.932) with cleavage site FT probability 0.277 between residues 23 and 24" FT misc_feature 470945..471124 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.4e-16" FT misc_feature 470987..471079 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 471194..471835 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 8.3e-34" FT CDS 471841..472035 FT /transl_table=11 FT /locus_tag="BPP0448" FT /product="putative integrase (Remnant)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0525" FT /protein_id="CAE36031.1" FT /translation="MSGKFEGVRPASESSIEISFVYQGKTCVRRLRMKPTAANLKRAAE FT QRAAIVEAIALGEHGGEQA" FT CDS 472347..477197 FT /transl_table=11 FT /locus_tag="BPP0449" FT /product="autotransporter" FT /note="Similar to the C-terminal region of Brucella FT melitensis extracellular serine protease BMEII0148 FT SWALL:Q8YDM7 (EMBL:AE009653) (2554 aa) fasta scores: E(): FT 4.4e-51, 28.75% id in 1833 aa. C-terminal region is similar FT to Escherichia coli adhesin precursor AIDA-I FT SWALL:AIDA_ECOLI (SWALL:Q03155) (1286 aa) fasta scores: FT E(): 3.4e-19, 24.02% id in 1382 aa. CDS contains an FT internal imperfect repeat region" FT /protein_id="CAE36032.1" FT /translation="MPQRSQPFNSYTGHSGVRGHGVAPTVLVLALGFHGTAAWADCQTV FT GSAVTCDASSPNPYTGTVGSGASSGNLTITVGPGARIESGNAHAISVGTGNTISLDGNA FT QVSNSVTTGGPGNYNAGLNTIEFEHTNTLMIGADVRVAAEGTDPAAHAIAFTGRTNVVT FT NYGTVSSASGAAIWNQLEDNFVSNTIYNYGVIETTANGGDAVVIGSATGNGATDRGMTL FT YNYAGGRITGNVVLGEGDDTVRLEAGSTLTGSLDGGAAGTDVLYLEGTSGSGELTQDIS FT NFDEINKIESGATWTLSGSLGANSSGKATVVNAYNGELIVTGDNSAAAAGSAMTVWGGA FT RLQVNTTSAMAAIQSNGSGVAAFSQQTDGTYAGVLSGGGNFAKEGAGSLTLTGVNTYTG FT ALQLKEGKVIVSAAENLGAANSRLEFDGGTLNTTSDMTSARRTTIDAGGGTFEVASGTT FT LNWTGRMLGNGTLVKEGAGTLALSGFNAHGGTVVNAGTVQISNDYGLGNGALTLNNSRL FT ASTADIYAEAAATVNGNGTFDTANGTTLQWMGDIGGAGALVKTGAGTLLLGGDSLYAGG FT TVVNAGTVQVFKDASLGGGALTLNNASLASLGSFSTARAATLTGNGTFDTTVGTTLGWT FT GDIGGAGALVKTGQGTLVLGGDNQYAGGTTVNAGTVQVARDANLGGVAGTVALNGGTLA FT ASASFSSARGVTIGAGNGAMSVASGASLDWQGLIDGTGALAKEGAGTLVLGNDNQYAGG FT TVVNAGTVQVARDANLGAAAGAVALNGGTLAASAGFSSARGVTIGAGNGAMSVASGASL FT DWQGLIGGTGALIKEGAGTLVLGNDNQYAAGTVVNAGTVQVSRDANLGAAAGTVALNDA FT RLASTGTFSTARAATLTGNGTFDTADGTTLGWAGDIGGAGALVKTGQGTLVLDGDNQYG FT GGTTVNAGTVQVSRDANLGAGAGAVALNDARLASTGTFSTARAATLTGNGTFDTADGTA FT LGWTGDIGGAGALVKEGLGTLVLDGDNQYGGGTTVNAGTVQVARDANLGAAGGAVRLQG FT ATLASTGSFASARALTLGAAGGTFATLGATTLGWDAAIDGAGGLTKTGAGDLVLSQANT FT YAGPTLIKEGRLAVNGSIASPVTIDPGGVLGGTGRVLGAVANSGTVAPGNSIGTLTIVG FT NYAGTGGQLEMEAQLGGDASPADRLVIDGGAATGRTDVVVINQGGLGGQTDQGIPLVVA FT RNGATTTADAFSLASPVAAGAYEYKLLRGTPDGAAANAQNWYLRSGLLVPPAEVPGGGP FT GGAPEPEFIPFYRPEVALYAGAPMLMRAVGLQALGTYHERTGEQGLMTRDDPDPVRRGA FT WTRAFGRTFERSGSGDVDPRFDGHVAGLQAGVDLYARRSDQGHADLAGVFGGYANARGH FT MDGFARGETGAYAGKPDLNAYYIGGYWTHIGPSGWYVDAVLAGTRYEQKAKSSNDLRTE FT AKGWGVTASVEAGYPVPIGEKWHIEPQAQLVYQRLTVSNGEDDVSSVSYRTPDSVTARL FT GARLSGQYAYNTTQLRPFMEVSLLRDFAGTDTVTFSGIDRIDSRYQATAVDLTAGLVAQ FT VRKDVGLWGQVGYGKSIGGGDGSDRGWAASLGLRIEY" FT misc_feature 474039..474074 FT /note="PS01098 Lipolytic enzymes G-D-S-L family, serine FT active site." FT misc_feature 475803..477191 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03212, Pertactin, score 1.1e-07" FT misc_feature 477108..477131 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 477282..477443 FT /transl_table=11 FT /locus_tag="BPP0450" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0526" FT /protein_id="CAE36033.1" FT /translation="MGAQADRLHGKRYECAFLPTEEDNMKTCIHVLAAVSGDARDQHET FT DAEMRDGK" FT CDS 477475..477606 FT /transl_table=11 FT /gene="ecnA1" FT /locus_tag="BPP0451" FT /product="entericidin A anti-toxin precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0527" FT /protein_id="CAE36034.1" FT /translation="MNNRIRAALLAAITLVALAGCNTMSGAGKDIERGGEKIQEKAQ" FT CDS 478053..483362 FT /transl_table=11 FT /locus_tag="BPP0452" FT /product="autotransporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0529" FT /protein_id="CAE36035.1" FT /translation="MRRLKAQAFEGSRSRPAGHGVAPTLLALALGFQGAAAWANCTTSG FT SNTTCTAAGGAHRAKVGGGSTGNNQHVTVQAGARIEAGDSGAISVGNNSRVQIQDGAVV FT QSTVNTAASGQYAKTLEAASNNNISIQVGAQLLAKGSASQSSALGLSGAGNTVTNHGTI FT RADNAAAIWITANTANAANTIDNYGTIETVLNGGYANAIGSTRNNSATGAGVTVRNHAN FT GRIVGNVKFEAGDDSVILDGGSTITGSLNGGSGNNSLTLKAGDGTLGRAIRNFGTITKQ FT EAGTWTLNGQVGRNDNNFKSTVKVEGGTLVLRGDNSGATQGGVLQVSAGATADVTAASA FT MQSISNAGTVQFTQDSNAAYAGVLSGTGSIVKRGGGDLTLTGNNTHTGKVVVEAGSLSV FT SAANNLGGAGSSVQLKGGALALKKTIAVNRGLTLDSGAQTLIIEPGTTTTWQGQVSGAG FT KLVTQGGTLVLEHASNTYSGGTEINNGTLRAAHDASLGSGTLALKNSQLAATDSFTATR FT ALTLAGNESIDVAATKILSWNGEISGAGTLVKEGQGTLLLRGTNQQNGGTTVNAGTLQI FT SRDANLGRGALALNDGTLQSTGSFATSRAATLRGQATMEVDASHTVTWNGELSGGGMLR FT KSGQGTLALAGANTYSGGTVVEAGALRAGHEDNLGRGAITLQGGDLLAGGSFSSNRDLT FT LVRGSLDVARDATLTWNGAISGAGDLVKTGDGTLALTGVNEYAGQTVLRQGKLRVAREE FT SLGGAALVLENNTVFESAGSYAIGRRVTLKGAPKVATPAGDTLEWRGTVDGDGKLYKQG FT GGTLVLSGNNTYAKGVEVWGGVVQVSRDQNLGAANGAVTLNGGGLAANGDFTSNRQLEL FT TAGAKAIDVAAGKDVTWRGVVNGAGALTKAGDGTLRLESVNTYTGGTRLQGGTVQVSRD FT NNLGQAAGAVTFDGGRLASTGSFATARAATLNNAGQIDTAQGTTLTWNGAIGGKGELRK FT QGAGTLVLGGANTYQGDTRVEAGTLQVSADANLGQGAVHLHDSRLATTGTFATSRRLEL FT TGRGTVQAAAAATLDWRGTVAGAGTLVKEGAGTLVLAGDNQHAGGTLVHGGTLRIARDA FT NLGAAGTAVTLDGGTLATTASLALDRALRVGARNGVLLPDAGTTLDWRGVVAGAGKLTK FT AGPGMLVLSADNRHGGGTAVTGGTLQVSRDANLGAAAGALTLDGGTLLSTASFASARAA FT TLDAAGGTFVTRDGTRLDWDGAIGGAGGLVKEGAGELRLGNANTYQGPTRIAAGRLAVN FT GSIASPVTVEQAGVLGGTGRIVGDVANRGVVAPGNSIGALTVAGNYAGTGGSLEVEAVL FT GGDAAPADRLVLDGGAASGVTPVVVKPQGGVGGLTLRGIPVVVAQGGATTAPGAFRLAQ FT PLVAGAYEYQLLRGAGDGAAAQAQDWYLRTSRVERDKAGRIVKVVPFYRPEVALYAGTP FT MLMRMTGTEMLGSYRERAGQTGAVSPEAGATAARGGWARTFGRRFERSAGGEAAPSFDG FT HLAGAQLGADLYARSSGTRHTDAFGVFGGYATVRGDVHGLARGEIQAVGTSTLRATQLG FT AYWTHTGPGGWYIDTVLAGTRYRQQTKSSAQVGAVSRGWGMTASVEAGYPWQLNPRWRI FT EPQAQVVYQQLGIANGADRVSTVSYKTPDALTARLGTRLSGQYAYGKAQLRPFMGVSLL FT HDFTGADTVTFAGAHGVRASRQNTAVDLKAGVDTQLGKSVGLWGQVGYGKSVGSGDGSD FT RGWSANLGLRVAY" FT misc_feature 481998..483356 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03212, Pertactin, score 1.3e-06" FT misc_feature 483273..483296 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 483396..483995 FT /transl_table=11 FT /locus_tag="BPP0453" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0530" FT /protein_id="CAE36036.1" FT /translation="MRLYWRMPTTTPALRPQVLTEAAFAPYGWMLGKPLPAGDDVPRFS FT NPATDFWQEHVFDTGVGAGRETEVLWVNYRVSQPGFDTLEKHLLTQQAIVPLTGAIVQI FT VARSAFDGSPDLASLAAFVVPPGQGICMRPGCWHATRISGGEVTCLMLTRRSTTLDLVR FT HLHGEPARESEIVAIVPHGLDLPARPTTEGPSPHGR" FT CDS 484307..485284 FT /transl_table=11 FT /locus_tag="BPP0454" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0531" FT /protein_id="CAE36037.1" FT /translation="MYRIVSALAVSVTCLAGMGAAQADQGAAAYPDKPIKIVIPYSAGG FT GTDQFMRIVSERASRVLGQPITILNKPGGSTVIGVNAVIGAAPDGYTLLVSTNTSYTLI FT PYVMSPPPYAPEKSLDYVATLGQTSMVLTANKTMPSDLKTVLDSARQSPGRYTYATYGV FT GSSTHLAGEVFMNDTGVEFRHIPYKGVEAVTALAGNQVDLMIDGINAAGTMLDAGKTQA FT LVVLQRTRSQFLPDTPTLVEAGYPEAAENVISYVMAAPKGTPAAVIDKLQKSFAEALRD FT PGVLAQAKAMRTEAAFKGPAQTQAFVDSQSALFKDIVAKKNIKF" FT misc_feature 484307..484375 FT /note="Signal peptide predicted for BPP0454 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 23 and 24" FT misc_feature 484454..485275 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.7e-56" FT CDS 485298..486872 FT /transl_table=11 FT /locus_tag="BPP0455" FT /product="putative substrate-CoA ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0532" FT /protein_id="CAE36038.1" FT /translation="MSSLEQQMQPPGQIWWDIIEAHARRFPERDALAHGDGAITYGELV FT ARVRRCAAGLSARGIGAGDCVALLAPPTPDAMVCLLAAARLGALWVGLNPRYQAREMAY FT VIGHAQPKLVLSVREFEARRYADDLEAALATLAPQARRPELLYYDSQASCDEAMLHALC FT DAPDAACPAPFDDAAQPCMLVYTSGTTGNPKGVLLSQTALIYRSTVQARTFATRSHPVV FT INFAPINHIGGMHFRGLSQILAGGTIIYQERYRPAEVMGLIEKHRVNMLMLGSTMLQML FT IREPSFDMSIMRGMEWFIFSGAAIPMPILQRVKEHCPRIGSTYGLTESCGSVSYIVASD FT SLEAAAYTVGRAIPEGQLRVADEQGQPLPAGTQGELQVRGQYCMNGYLRDAAATAGAFT FT RDGWLKTGDMAQREDDGNFRLVGRIKEMYKSGGYNVYPREIEVVLEQHPNVLMSAVIAV FT DDELYQQVGHAHLILRPDTEVSEPELVQWCRERMANYKVPKRIFVRNSLPMLSIGKVDK FT IALRQQH" FT misc_feature 485415..486662 FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 3.1e-108" FT misc_feature 485844..485879 FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 486850..487620 FT /transl_table=11 FT /locus_tag="BPP0456" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0533" FT /protein_id="CAE36039.1" FT /translation="MPCGSSTRPSMSNPLNRYHHILHAIAGRPGGLSLADLAAATGLPR FT STTHRMATTLREIDYLGQDDASGNFVLGDGLIGLMRSSLAQDSKLALFDPALNFVVGRL FT EETAFCARLWNDEVDLVQAVTPTRKDQLYIYPGVGGRPLDKCSSSKAILAYLDPARIQA FT LLEPLASSTPGLRVDTLMQELDQVHRQGFAICDGEIDEGVLSVACPVMSGPARGLYSIG FT VVGPAARLKSHDLQEIVEVLHSAADLAAAELLNS" FT misc_feature 487057..487605 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 8.8e-11" FT CDS 487644..488408 FT /transl_table=11 FT /locus_tag="BPP0457" FT /product="probable enoyl-CoA hydratase/isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0534" FT /protein_id="CAE36040.1" FT /translation="MKEIISLEKTGAVATVTIDRGGKRNALSQEMVLRLTDIALQLQQD FT TSVACIVLSGNQNEFSAGIDLGDATRWSLDDKTQLERRAIALRGTRLCKAWEDLPQITI FT VAVEGMNVGGGIALTLACDWRVMGKSAFLFVPEVQIGIPLGWQTIPRLVNLVGPARAKQ FT IVLLGEKMSADTALEWGVADFVVADGAACAHAQDLAARIGKMPELAVRMSKQSINAYAN FT ALNHLGSHMDVDQAMLCGQTQDAVAVRDRYAR" FT misc_feature 487683..488204 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 7.3e-26" FT CDS 488453..488788 FT /transl_table=11 FT /locus_tag="BPP0458" FT /product="probable carboxymuconolactone decarboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0535" FT /protein_id="CAE36041.1" FT /translation="MLDWNQYRSELMTRIGEIAKASPETVKGYQQLSAAGKQTNQLDAK FT TRELIALAVAVTTRCDGCIAVHAKAATDNGATKGEIAEALGVAVALNAGAALVYSARVM FT DAVDAAQ" FT misc_feature 488483..488770 FT /note="HMMPfam hit to PF02627, Carboxymuconolactone FT decarboxylase, score 6.2e-20" FT CDS 488842..489822 FT /transl_table=11 FT /locus_tag="BPP0459" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0536" FT /protein_id="CAE36042.1" FT /translation="MSRLARLLLAGCCALGAAAPAGAGNWPAGPVTFIVPFPAGGSMDT FT FSWPIAGQLSKELGVPVVVSNRSGAGGGVGIAAIARAAPDGYTIGMSSVGNMAINPHIY FT PDLPYSPLKDFTPIGLAGRFVNVLVVNSKIPARNVQELIELDRKKPGSITFASAGNGST FT NHLSGELLKQLTHTSFLHVPYRGSGPALADVVAGNVAFMFDTLNTSMPLIESGALRALA FT VTSAERSPFLPDVPTMNEAGVAGYAKSGEDLWWAIIAPQGVPADVRDKLNAALNKALGS FT PALQAQVRAQRVETLTSTPDALQTILRDDYNRWGGIVRDAGVKLD" FT misc_feature 488842..488910 FT /note="Signal peptide predicted for BPP0459 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.958 between residues 23 and 24" FT misc_feature 488989..489810 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.3e-96" FT misc_feature 489487..489537 FT /note="PS00237 G-protein coupled receptors signature." FT CDS 489923..490945 FT /transl_table=11 FT /locus_tag="BPP0460" FT /product="zinc-binding dehydrogenase" FT /note="Similar to Ralstonia solanacearum putative FT oxidoreductase protein RS00208 SWALL:Q8XVE0 (EMBL:AL646072) FT (338 aa) fasta scores: E(): 1.7e-73, 65.1% id in 321 aa, FT and to Pichia stipitis alcohol dehydrogenase I ADH1 FT SWALL:ADH1_PICST (SWALL:O00097) (348 aa) fasta scores: E(): FT 2e-08, 27.55% id in 323 aa" FT /protein_id="CAE36043.1" FT /translation="MPCLARFEEASMFDALLLTQNDDRAIVAQRARLDEAQLPDGDVLV FT DIAWSTVNYKDALAITGRIPIVRQFPMVPGIDFAGTVLESHDSRYRAGDAVLLNGWGLG FT EAHWGGLARKARVKADWLVPMPGGMDARRAMAIGTAGYTAMLCVMALQRAGVSPEAGPV FT LVTGANGGVGTIAISLLARLGFEVHASTGRLNEVDYLKQLGATELIDRATLNQPGKPLQ FT KERWAAAVDSVGSHTLANVCASIRYGGTVAACGLAQGMDFPATVAPFILRGVTLAGIDS FT VYAPFARRAEAWGRLASELPAEITDANTRAITLDEVVDLAPRLLAGQVRGRVVVDVGAG FT " FT misc_feature 489980..490933 FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenase, FT score 1.6e-26" FT CDS 491037..492290 FT /transl_table=11 FT /locus_tag="BPP0461" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0438" FT /protein_id="CAE36044.1" FT /translation="MQSFYQEPAVAADLKEAPHPPKALSGLRVLDIATFLAAPFCGTIM FT ADFGADVIKIEQPKGGDSLRKFGTPSPCGDTYMWMSEARNKRFVTLDLRTPEGAALFKE FT LVRESDVVLENFRPGTLEKWGLGYDVLSELNPGLILLRVSAYGQDGPKREEPGFARIAH FT AFGGLAHLAGEPDRPPVVPGSTSLADYISGLWGAIGVLTALQARNHTGLGQVVDIGLYE FT SVFRLLDEIAPVYAATGFVRRRLGADVPNVAPHSHYQTRCGQWVAIACSNDRMFERLAS FT AMGKPELAGDARFATAAARAESRPAINAQVAAWSARFDLQALLDLCRDEGVPCSKVYSI FT EDIFQDEQYRARGNLMEVDDPRIGKTVLPAPVPRLSGTPARFLRAGGALGQDNAGVFEE FT LLGVCGERLAALRQAGVV" FT misc_feature 491301..491873 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 2.9e-64" FT CDS complement(492268..493230) FT /transl_table=11 FT /locus_tag="BPP0462" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0437" FT /protein_id="CAE36045.1" FT /translation="MGKEKSRPLPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTG FT QIKQLEAQLGVDLFHRTTRQVRLTAEGAQLLESARRAVHEMENGLRQIQETVDLKRGRI FT FLSCSTTVSSTRLAPILAAFERDYPGVEVFVRELTSGDMFETVRREEADFGIGPIMELP FT EFDFEPILTENLYAVVPRNLFPDTAEQITLARLASMPLLLLNPGTALRALIDDTARSRG FT LTINTKFQFSQAQTLISMATAGLGAAVLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVR FT LRHRKLTPAAARLAQLVRDLIHGPSGRRTARATTRRPPA" FT misc_feature complement(492322..492942) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 9.3e-40" FT misc_feature complement(493012..493191) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.4e-22" FT misc_feature complement(493057..493149) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 493383..493859 FT /transl_table=11 FT /locus_tag="BPP0463" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0436" FT /protein_id="CAE36046.1" FT /translation="MLLARGRLLEDFKTGDQYAHWPGRTITEADNIQFSLLTMNRHPAH FT CDHHYASQTEFGKPLVNSGLTLAIVLGMSVDDISANAVANLGWQEIELLAPVHPGDTVY FT ARSQVLSVRESKSRPGQGVVTVRTEGVRADGVVFMRFVRSCLVPSRASLAGARQ" FT misc_feature 493413..493778 FT /note="HMMPfam hit to PF01575, MaoC like domain, score FT 3.9e-18" FT CDS 493856..495088 FT /transl_table=11 FT /locus_tag="BPP0464" FT /product="putative dehydratase/racemase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0435" FT /protein_id="CAE36047.1" FT /translation="MNLDFLKGVRVIESSAFIAAPLAGLTLAQFGAEVIRLDMTGGGID FT YERMPRMPDGTSLYWTGLNKQKRSVALDLRKPEGRDLARKLVCAPGPDAGILLTNIGVP FT WLSHAALAEGRPDVITCTIEGNADGSSAVDYTVNCATGYPHATGDGREPVNSPLPAWDA FT CCGYQAAMAVVSAVLRRRQTGQGAELRLALSDVAFALMSHLGTLAQAELLGEDREPLGN FT HLYGAFGRDFVTRDGNRVMVAAISKGQWQSLVRTCGLAEAVAAIEARTGAKLAEEAQRF FT AHRDAIAAACEPWFRARTLAQAKTALDDGGVCWGLYQTATQMLARDGRAGSANPLFEWI FT ATAGAGEHWALGTPVREPRATRQPTQGASRLGQHTDQVLGELLGLSARQLSDLHAAGVV FT AGPSGDPRGAH" FT misc_feature 494063..494614 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 6.8e-09" FT CDS 495152..496117 FT /transl_table=11 FT /locus_tag="BPP0465" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0434" FT /protein_id="CAE36048.1" FT /translation="MTLRFASLAAALCILAPQAHATQAYPDKPVRIIVPWTPGQATDVA FT ARAAGEKLAAALGQPFIVENRAGAGGTIGATVVAKSEADGYTLLAGSSGSVTVNPLLMK FT SGFSPSDLEPAGLVAKVPYVLVTSSDFPAKTAQELIDLLRKSPEKYTFASSGNGSIGHL FT TAEVFMDSAGIKAQHIPYKGSAAALTDVLSGQVSFMWDSVASVAPHVKSGRARAYAVSS FT AQRSASMPDVPVLAEVSEIKGFDMVAWVGLMAPKGTPEDRLERINQALLESLRASDVAK FT QFVTLGIDPYPASRQEARKVLAAENQRVSEMIQRLGITPQ" FT misc_feature 495152..495214 FT /note="Signal peptide predicted for BPP0465 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.957 between residues 21 and 22" FT misc_feature 495284..496105 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 4e-101" FT CDS complement(496104..497093) FT /transl_table=11 FT /locus_tag="BPP0466" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0433" FT /protein_id="CAE36049.1" FT /translation="MDRFDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLR FT VRLLNRTTRKVNATADGAAYYERVRQLLADLEDAETSLSGASATPGGRLRVDVPSPFAS FT TILVPALPAFQARYPDILLHLGVSDREVDLIDENVDCVIRGGQIGNLSLAARHVGDLQL FT GVYASPGYLARAGVPAHPRELQDAQHRIIGFSWSRARRLFPCAMRRRADERIEVAGRHA FT LLLDEGNAYLAAGLAAMGVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRH FT VSAKLRVFIDWIVELMARHAPVTDAPPPHRSARMPGGPAAIPTDITGA" FT misc_feature complement(496200..496835) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 4.5e-40" FT misc_feature complement(496905..497084) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.8e-17" FT misc_feature complement(496950..497042) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 497237..497641 FT /transl_table=11 FT /locus_tag="BPP0467" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0432" FT /protein_id="CAE36050.1" FT /translation="MSARNVVFPAGRQALYDRNRYSPAIRSNGFLFVSGQVGSQEDGSP FT KQGLQDQVRQAFDNLNAILAAAGCGFDDVVDVTVFMVDPQSRFEQIWEVVPEYWGPAPH FT PTLTAVGVTWLYGFDFEIKVIAKLPRASQD" FT misc_feature 497261..497620 FT /note="HMMPfam hit to PF01042, YjgF family, score 6.4e-30" FT CDS join(497806..498720,498724..501192) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0468" FT /product="putative molybdopterin oxidoreductase FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0431" FT /db_xref="PSEUDO:CAE36051.1" FT misc_feature join(497821..498720,498724..499725) FT /note="HMMPfam hit to PF00384, Molybdopterin FT oxidoreductase, score 1.9e-17" FT variation 498721..498723 FT /note="In-frame TGA stop codon in parapertussis; TGG in FT pertussis" FT misc_feature 499771..500139 FT /note="HMMPfam hit to PF01568, Molydopterin dinucleotide FT binding domain, score 5.1e-14" FT misc_feature 500194..500496 FT /note="HMMPfam hit to PF00970, Oxidoreductase FAD-binding FT domain, score 1.4e-16" FT misc_feature 500512..500865 FT /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding FT domain, score 4.1e-08" FT misc_feature 500965..501171 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain, score 0.002" FT CDS 501223..502686 FT /transl_table=11 FT /locus_tag="BPP0469" FT /product="short-chain fatty acids transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0430" FT /protein_id="CAE36052.1" FT /translation="MPNNHLTAAAPAQGREAIASPMERFSQAMVAWAEKWFPDAYVFVV FT VACAVVALGAILHGGDPLAVSKAFGEGFWSIIPLTMQMAMVAITGYVLALSPPVARLLR FT ALARVPSTPRGAVVFIGTLSILLSLVNWGLSLIFSGLLVREMARRNDLRLDYRAAGAAG FT YLGLGCGFTLGMSSSAAQLQATPASIPASLMPITGVIGFSETILTWQNLVVVILVTVVS FT GLVCYFTAPSPERSLTAQDLGVDLTEPEAQAAQRQRPGDYLEFSPWLTVAVVGLASGWL FT YLTFRSGNPFITMSQLNTYNFVFLLLGLLLHWRPRSFLESFGRAMPSIGGVMLQFPFYG FT GIGYVLTKVANVQGHTLSDAIAHWFVSLAHDSSVFSILVSIYSAFLGFFIPSAGGKWVI FT EAPYIMDAANQIQAHLGWTVMVYNIAETLPNFINPFWMLPLLGILRLKSKDLVGYTAMQ FT FLVHFPIVVAAGAILMHTFSYVPPVIPGQ" FT misc_feature 501283..502644 FT /note="HMMPfam hit to PF02667, Short chain fatty acid FT transporter, score 2.2e-49" FT misc_feature join(501343..501402,501439..501507,501565..501633, FT 501694..501762,501838..501906,502006..502074, FT 502102..502161,502195..502263,502339..502407, FT 502573..502641) FT /note="10 probable transmembrane helices predicted for FT BPP0469 by TMHMM2.0 at aa 41-60, 73-95, 115-137, 158-180, FT 206-228, 262-284, 294-313, 325-347, 373-395 and 451-473" FT CDS 502834..503478 FT /transl_table=11 FT /locus_tag="BPP0470" FT /product="putative GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0428" FT /protein_id="CAE36053.1" FT /translation="MARMAPPANLRESVIAQLRSRIVSGAAAPGMIYSVPSLANELGIS FT TTPVREALLELSRSGLVEPLRNRGFRVQAITVQDLENHFDVRVMLESGALATLARQGLT FT DTAPLVALADEVAQAVKDQDVGQYIESDRRFHEALVARAGNPLLTRMIMHLRADMRLYG FT INSEEGRVRQRASVDEHYEMIDLAVKQQPEAIVALITRHIESWKPLFAAAL" FT misc_feature 502834..502950 FT /note="Signal peptide predicted for BPP0470 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.705) with cleavage site FT probability 0.704 between residues 39 and 40" FT misc_feature 502873..503049 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 2e-08" FT CDS complement(503508..503945) FT /transl_table=11 FT /locus_tag="BPP0471" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0427" FT /protein_id="CAE36054.1" FT /translation="MKRLKKALARVANACLGVLPPATGGTRPDGHSRHQPGTHAAILSP FT WRVYRIYARPGRLVLRNDQGRIHDLGVMTGVEPHLAYRLFARGLKGQGFASRTLLLDDI FT ARRIEDGEISDELLALAECTVEPGVDLDRGTHTDVSMKLAR" FT misc_feature complement(503874..503945) FT /note="Signal peptide predicted for BPP0471 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.966) with cleavage site FT probability 0.931 between residues 24 and 25" FT CDS 505453..505656 FT /transl_table=11 FT /gene="cspA" FT /locus_tag="BPP0472" FT /product="cold shock protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0426" FT /protein_id="CAE36055.1" FT /translation="MQTGIVKWFNDEKGFGFIMPENGGPDLFAHYSEIQGEGHKALVEQ FT QRVSYVQGHGPKGPMATKITPL" FT misc_feature 505453..505650 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00313, 'Cold-shock' DNA-binding FT domain, score 5.2e-30" FT misc_feature 505495..505554 FT /note="PS00352 'Cold-shock' DNA-binding domain signature." FT CDS 505833..506738 FT /transl_table=11 FT /locus_tag="BPP0473" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0425" FT /protein_id="CAE36056.1" FT /translation="MELRQLRYFVETAHRRSITKAASALHIVQPALTAQIKALEDELGI FT QLLERSARGVSLTVEGEAVLRDAVSVLRAVDDLKRRHGVAARPGRAVKIGIPNGMTRTF FT AGQLIERARQQCSFDIELIEGMSGHLLEWLKSGRLDIAVLFASQPLRQLEVRRLTADSI FT DLVGPPGALDAQRPVAFRDLPQYPLILPNAKHGLTRHIQAQARALGVELRHHTTLDSIA FT EIKHLVSQGVGYTLLAPMVYRPEMEQGLLSATPVRDPALTRELVTATRRLHEAGDDIAQ FT VRALVHEICGARQDPVATPG" FT misc_feature 505839..506018 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.2e-26" FT misc_feature 505881..505973 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 506085..506705 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 8.7e-32" FT CDS complement(506764..507738) FT /transl_table=11 FT /locus_tag="BPP0474" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus 2,4-diphenoxyacetic FT acid gene cluster hypothetical protein SWALL:Q9RHQ7 FT (EMBL:AB028643) (337 aa) fasta scores: E(): 3.1e-37, 39.04% FT id in 315 aa, and to Comamonas testosteroni hypothetical FT protein Orf4 SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta FT scores: E(): 7.4e-35, 36% id in 325 aa" FT /protein_id="CAE36057.1" FT /translation="MHRRTLLQGMLAGAAGIGLGLPARAAQYPDRALQWIVPYPPGGAT FT DSVARAIATSMGEQLGQPVVIVNRPGGATNIGTEAAIRAAPDGYTLLLAVPPLVVNPAL FT YPQLSYQPLRDTQAVGLVALNPNVLVVPADSPWRTPQQLFEAAQAKPDTITIGSPGIGT FT VPHLVSLLIGQELNVRVVPVPYKGSAALMPDLVSGRVNAAMDNLFAQVASVRSGRVRAL FT ATLGDKRSPLLPDVPSMTELGLSKLSGMGWIGMVAHSGTEPARIARLEQAVLRAAREPD FT IASRLEAMGLMVVPEGREAFQQRLSTEAELWQGTVRRAGVTAA" FT misc_feature complement(506776..507597) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1e-82" FT misc_feature complement(507664..507738) FT /note="Signal peptide predicted for BPP0474 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.990 between residues 25 and 26" FT CDS complement(507749..509338) FT /transl_table=11 FT /locus_tag="BPP0475" FT /product="putative sulfatase" FT /note="Similar to Rhizobium loti choline sulfatase MLL7612 FT SWALL:Q985M3 (EMBL:AP003012) (509 aa) fasta scores: E(): FT 4.6e-77, 44.15% id in 496 aa, and to Pseudomonas aeruginosa FT choline sulfatase BetC or PA0031 SWALL:Q9I799 FT (EMBL:AE004442) (503 aa) fasta scores: E(): 2.7e-81, 46.24% FT id in 493 aa" FT /protein_id="CAE36058.1" FT /translation="MPQTKQPNFLFLMADQLTAFALRMYGNGVCRTPNLDRLAARSTRF FT ANMYCNFPLCAPSRVAMLTGRLPSSVGVYDNASEFSAEVPTFLHHLALAGYSTILSGKM FT HFVGPEQHHGFQERLTTDIYPSDFGWTPDWREEIPIAPTGMNMRSVIEAGEYRRSMQID FT YDDDVVYRGVQKIYDLGRLHRDRPFFLAVSMTHPHNPYVSTREFLDLYRPEDIDMPAVP FT PIPFAQQDPHSQRLWYMFRQDEYDVSDAHVRAARHAYYAMVSYVDAQVGRMLDALQAMD FT LDESTVVVFTADHGDMLGERGLWYKWVHFDPAVRIPLLISAPGRTRPAVRHELASLVDI FT FPTMLELAGVSVPDDGASPPPDGRSLAEGLGVSQDEPTGVVYGEMNGEGAHAPCLAVRQ FT GWWKLVVAEGDPPLLFNLQDDPHELRNLAGQPAARDIERQLTALVQARWDARRLHQDIL FT HSQARRRLVQQSRLQGDFPAWDYQPFTDASRQYVRAGAQSSPALVKGKLRYPPVAPVAP FT QHPRPARSNLPE" FT misc_feature complement(508076..509320) FT /note="HMMPfam hit to PF00884, Sulfatase, score 5.6e-46" FT misc_feature complement(509144..509182) FT /note="PS00523 Sulfatases signature 1." FT CDS complement(509346..510386) FT /transl_table=11 FT /locus_tag="BPP0476" FT /product="conserved hypothetical protein" FT /note="Similar to Alcaligenes eutrophus hypothetical FT protein MacB SWALL:Q9RBG2 (EMBL:AF130250) (340 aa) fasta FT scores: E(): 1.8e-34, 39.26% id in 326 aa, and to Rhizobium FT meliloti hypothetical protein Ra1058 or Sma1927 FT SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): FT 1.8e-31, 32.92% id in 325 aa" FT /protein_id="CAE36059.1" FT /translation="MEAAMEKKPSGETPVLRADAPDAARRRWLHGAAALLGTLPLAGLA FT RADALTQRQLNLVVPFVPGGPVDIAGRVVGQELGQQLGTPVVVSNKGGAGGNIGAEEVS FT RSQPDGGTLLLALDSILTVNPYFYGKGATQGVQTLAPVGMVGELSSVLVVNARSPIKSV FT ADFLEHGRRNNLTAGSGGNATAGHLYAEQLKRDFGVQLTHVPYKGLSPAVQDLLAGNID FT CIVALIPGVLPHIRAGSLRALGLTSARPQVLLPELKPLSELGLPGFTGASWLALMAPEG FT VPPGVADKLSAGLSQALRNPAVVERLHSAGIDPLYADAPTVRARIAREGAQWSTLLASI FT QPAPQR" FT misc_feature complement(509361..510179) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3.5e-76" FT CDS 510662..511669 FT /transl_table=11 FT /locus_tag="BPP0477" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia sp. U2 hypothetical protein FT NagM SWALL:Q9Z3X3 (EMBL:AF036940) (341 aa) fasta scores: FT E(): 5.7e-36, 36.52% id in 334 aa, and to Rhizobium FT meliloti hypothetical protein RA1058 or Sma1927 FT SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): FT 4e-30, 33.43% id in 323 aa" FT /protein_id="CAE36060.1" FT /translation="MMPNPTGRQMLRRIFSKAAAAAALLGMAMAPVAGHANGQPTRIVV FT GFAAGGAADILARTFAEWMHAHLGDTYIVENRPGASARIAVDYVKRAAPDGKTILISSP FT SPITIFPLTYKKLNYDPDTDLIPIAHLVDAPQALTVSASGPIHSMQDYLAGIKKDPRAA FT SVGMVTLGSPTHFSLLSLGKSIDVPLTPVAYKGVGPMLSDVIGGALPACINPLGGQMEL FT YRAGKIRFLGVTGTRRSAMLPDVPTMKEAGADGFEMASGWFAAFVPAGTPKETVEKLEK FT AMMAAAKDPVIREKLQELGLETTGWSGDELKQYIHAQRDYWRGIVAESGFSADS" FT misc_feature 510662..510769 FT /note="Signal peptide predicted for BPP0477 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.833 between residues 36 and 37" FT misc_feature 510827..511654 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 8e-63" FT CDS 511727..513376 FT /transl_table=11 FT /locus_tag="BPP0478" FT /product="conserved hypothetical protein" FT /note="Similar to Methanosarcina acetivorans str C2A FT exoenzymes regulatory protein AepA SWALL:AAM04201 FT (EMBL:AE010738) (553 aa) fasta scores: E(): 2.7e-36, 29.89% FT id in 572 aa, and to Mycobacterium tuberculosis FT hypothetical protein RV0552 or MT0578 or Mtcy25d10.31 FT SWALL:O06418 (EMBL:Z95558) (572 aa) fasta scores: E(): FT 5.2e-26, 29.29% id in 553 aa" FT /protein_id="CAE36061.1" FT /translation="MTLSPTTIFPARRIHTMNATQPRATHVAVREGRILDVGDASLREA FT WPDAVVDSRFSDKVLLPGLIEGHSHLLEGGMWRFVYLGYYDRRGPDGRVWPGLKSYEAV FT IERLREAEALMPDAQAPLLAWGFDPIHFGGQRMTTCHLDQVSKTRRIVVLHASVHLLNV FT NTAMLRQADIHAGLRIDGIVRAADGTPTGELQEFAAMFMVFKHIGNVFFDAGQSEEGIR FT NFAKIAQQAGVTTATDLSHALADDMVDNLVRVTGEDDFPLSLVAAYSPMRDMNGRSVDR FT VLGAMQRNTAKLHFGLVKLVIDGSIQGYTARVRWPGYHNGAPNGMWIIAPQQLRELLME FT YHKAGLTIHIHTNGDEATEAAMDALESVLAEYPRWDHRHTLQHCQMADAAQFRRMARLG FT MCANLFANHLYFWGDAHYTDTLGPARAFRMNAAKTALQAGVPISLHSDAPITPIGPLFT FT AWCAVNRVTAGGRILGSQERIPVMDALHAMTLGAAYTLKLDHLIGSIEVGKLADFAVLE FT ADPLEIAPQDLAGIGIWGTVLGGRSFPAPQLS" FT CDS 513373..514383 FT /transl_table=11 FT /locus_tag="BPP0479" FT /product="hypothetical protein" FT /note="Similar to Pseudomonas denitrificans protein CobW FT SWALL:COBW_PSEDE (SWALL:P29937) (353 aa) fasta scores: E(): FT 4.7e-12, 29.85% id in 335 aa, and to Anabaena sp FT hypothetical protein All1751 all1751 SWALL:Q8YW65 FT (EMBL:AP003587) (323 aa) fasta scores: E(): 3.1e-21, 30.12% FT id in 332 aa" FT /protein_id="CAE36062.1" FT /translation="MTAPGSVPLTVIGGFWGAGKTTLLNYLLKVQHSERVLVMVNDFGS FT INIDAELLDQGRHDRPGVVRLQNGCVCCSIGGDLMQAFLQVMSMPDRPDRIIVEASGVA FT DPTRIAQIGRVSGGLSDEGVITLVDASAVRALAADKYVGDIVRQQILSADIVLLNKLDL FT SSDAEIVETRAWLRDLAPRTRVVSCIHGEVDAVSVLGIGAGKVAPDTAGGPVDVPVPDL FT RRASTRHADTFHSSTLATEHRFDRRRIEYALDALPQTVLRGKGFVELEGEATPALLQLC FT GSRWTLDPVSTPAPPAGTHLVFIATGGRGVPRFDAPSHFEQALASRDAASADTSN" FT misc_feature 513412..513435 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 513484..514287 FT /note="HMMPfam hit to PF02492, Cobalamin synthesis FT protein/P47K, score 1.7e-29" FT CDS complement(514514..515665) FT /transl_table=11 FT /locus_tag="BPP0480" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces fradiae FT deoxyallosyl-transferase TylN SWALL:O70023 (EMBL:AJ005397) FT (422 aa) fasta scores: E(): 5e-25, 31.04% id in 393 aa, and FT to Calothrix viguieri hypothetical protein SWALL:O52939 FT (EMBL:Y09899) (305 aa) fasta scores: E(): 1.3e-27, 37.5% id FT in 296 aa" FT /protein_id="CAE36063.1" FT /translation="MMDAGHEVLLLADGNTLASARRLAVPHAALSGNIQESLADLVSQG FT KGVNATVAALSGIANAQAESWMRQAAEAAAGCDGMIVAGLAAFVGLSIADRLGIPAIGA FT GMIPISPTSAFASPFLPAGKLPSALNKASHHLVNGLLWLSFRRSVNRARRQVLDQGPRH FT RLWTGHPMLYGVSPALLPPPADWPANARLCGQWLEPADGAWSPPAELEDFLKAGEPPVY FT VGFGSMMGFDREALLRAVFAGLEGERILFHPGWSGLPDVRLPQDCLVIGNTPHGWLLPR FT TSLAMHHGGSGTAHSACRAGVPSVVLPFAGDQFFWARQLARLGVADAPISTRQLDAGAI FT KAAVRFARLPATRSSAAALAQAMSREDGTATAVREIESALASN" FT CDS complement(515731..516354) FT /transl_table=11 FT /locus_tag="BPP0481" FT /product="putative TetR-family transcriptional regulator" FT /note="Similar to Deinococcus radiodurans transcriptional FT repressor, TetR family Dr1402 SWALL:Q9RUI4 (EMBL:AE001985) FT (208 aa) fasta scores: E(): 2.9e-09, 29.46% id in 207 aa, FT and to Streptomyces coelicolor putative TetR-family FT regulatory protein Scc53.10 SWALL:Q9KXK1 (EMBL:AL357591) FT (250 aa) fasta scores: E(): 2.8e-07, 30.28% id in 208 aa" FT /protein_id="CAE36064.1" FT /translation="MPPPPGLRARKRQSVRDTITTVAGQLFQQDGYEAVTMERVAQAAN FT VARGTLYNHFPTKDHVLAAWVHQELARDLGSLPLAGLASQEFAAGAAQLLGLSARWCAA FT HRDLLPAYLRFCFLDMQSPEAAHGGDGLLALYARMIGNSQASGGIRADMPAPYLATMFH FT HLYLGALMRWFADPALSLDTAFSCALGLFLQGCAARSAAKGDGS" FT misc_feature complement(516160..516300) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 7.1e-15" FT misc_feature complement(516172..516264) FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT misc_feature 516456..529124 FT /note="Low % GC region. Contains several putative phage and FT plasmid related genes. Unique relative to pertussis. In FT bronchiseptica it is replaced by another plasmid-related FT region" FT CDS 516506..516709 FT /transl_table=11 FT /locus_tag="BPP0482" FT /product="hypothetical protein" FT /note="No significant database matches. Doubtful CDS" FT /protein_id="CAE36065.1" FT /translation="MRVQAGGGGGGEDVAPGDLWGLMGIMGQVLFWVHDFLGGLARRGC FT ALGQLLVYCDRSWIGASCGGGF" FT CDS 517060..517650 FT /transl_table=11 FT /locus_tag="BPP0483" FT /product="putative phage-related protein" FT /note="Poor database matches. Similar to the N-terminal FT region of Bacteriophage P4 nonessential protein cII FT SWALL:RCII_BPP4 (SWALL:P13059) (264 aa) fasta scores: E(): FT 0.00065, 25.13% id in 183 aa" FT /protein_id="CAE36066.1" FT /translation="MAFLNDASIREALIQRLRSMSKAPRVILEELRVHNGNAIADVVAI FT NDFAHCYEIKGDNDSILRAVKQSHYYDLVFRRTTLVTTEKHIQRALLLVPPHWGMICAR FT LRNEDVTLSYVRPARQNLGFDKKLAVMTLWKSEMVEVATPLNLKNANKLNREQLCEAIA FT SNFSTSDLVKTIGNSLTLRAGLNPEVSQHVSYM" FT CDS complement(517612..518643) FT /transl_table=11 FT /locus_tag="BPP0484" FT /product="putative phage-related protein" FT /note="Poor database matches. N-terminal region is similar FT to an internal region of Streptococcus salivarius FT glucosyltransferase precursor GtfM SWALL:Q55265 FT (EMBL:L35928) (1577 aa) fasta scores: E(): 0.42, 20.97% id FT in 286 aa" FT /protein_id="CAE36067.1" FT /translation="MVALSELKPEIKSMTYPFLDLPKRQFSTEEEFLDVLAKYRKSVGK FT HTNGCPTIFLDDFDNEDSLTINGENSYGAVIDIFSDLNEFVPVIGLDREDARNEIVFQR FT KEAGVLRSNTIVIRLQVDDFENFALVEPDISRLMARGQGLFHRWSIILDNRLCLNVNVG FT DRSQKIVNFINSAVARFDLFSFIISGSSIPASIRDILEVEKEHHHPRIELDIYRNIAPQ FT LHGHNIHLGDYTVVSPYYSDVDIPKEAMQNVTAPKIIYSYGNNHYIARGGAIRTHRRGF FT LQYNDIAAHIVRQHFYRTPAYSYGDNFIYSKSMGEGKRVTPGSILKPTINLHITYMLRD FT FRI" FT CDS complement(518678..519541) FT /transl_table=11 FT /locus_tag="BPP0485" FT /product="plasmid-related protein" FT /note="Poor database matches. C-terminal region is similar FT to C-terminus of Xylella fastidiosa hypothetical protein FT XF1708 SWALL:Q9PCS0 (EMBL:AE003994) (371 aa) fasta scores: FT E(): 8.4e-18, 33.8% id in 213 aa" FT /protein_id="CAE36068.1" FT /translation="MSPANNNEDDFPLTYSEEGLSPQELYESFLECQSGINHIPKGNRD FT QDYYESLHRAFKENLRYKKNGQPLFRRRSDAEDSIAKYWLSRVREAAWFYSAWNDLPQF FT SGIEVEYLESLARLSTNPGNIPNLAEQLAKAGIILIHERAIPGMKVDGACFLLETGHPV FT VALSLRYARLDIYWFTLLHELAHIALHHEQLTTPILDDVDDENTSLIEAQANKLSSDSL FT ISRSSWRSSSVKYDMSEKSLLDFAEKVQVHPAIVAGRLQRDLNRHDIFTKIIHSENTRK FT IIFGDE" FT CDS complement(519858..520166) FT /transl_table=11 FT /locus_tag="BPP0486" FT /product="hypothetical protein" FT /note="No significant database matches" FT /protein_id="CAE36069.1" FT /translation="MSDQVAEGVLKSTDGRSVVYSFHSGWDIVKAHLCNRRWGAFNMEL FT LSFVHENYKNDIERRTIMDGLQLEDNHWDWLKKSAILKTDEYKWSLSSLKGFLKLLV" FT CDS complement(520357..520581) FT /transl_table=11 FT /locus_tag="BPP0486a" FT /product="putative plasmid-related protein" FT /note="Similar to Bacillus subtilis hypothetical protein FT Orf13 SWALL:Q9X3Z9 (EMBL:AF091592) (55 aa) fasta scores: FT E(): 0.22, 41.66% id in 36 aa, and to the C-terminal region FT of Rhizobium meliloti hypothetical protein SWALL:Q91UM4 FT (EMBL:AJ304453) (110 aa) fasta scores: E(): 1.3e-11, 58.9% FT id in 73 aa" FT /protein_id="CAE36070.1" FT /translation="MAEMDSRETELTKTISGAERDRRVVAVNYARASVGLEGFSLSAAD FT EEHAQRFINGDIDLEEFVQPRSALASPKA" FT CDS complement(520700..520996) FT /transl_table=11 FT /locus_tag="BPP0487" FT /note="Poor database matches. Similar to the C-terminal FT region of Streptomyces coelicolor hypothetical protein FT SC1A9.25c SWALL:Q9ZBS7 (EMBL:AL034446) (129 aa) fasta FT scores: E(): 0.52, 30.43% id in 92 aa" FT /protein_id="CAE36071.1" FT /translation="MTPLPVRITTRMPNCAIDSADDGSRGWCGPQPYGRGHGPLTRQEC FT PHATPGGRCSGPSARNPCPRGRRGWRVQRGKASLGSTLTNGGRPVSWSIGKTY" FT CDS complement(521064..521819) FT /transl_table=11 FT /locus_tag="BPP0488" FT /product="plasmid-related protein" FT /note="Poor database matches. Internal region is similar to FT the C-terminal region of Escherichia coli plasmid FT hypothetical protein VirB6 SWALL:Q91UX1 (EMBL:AJ297913) FT (360 aa) fasta scores: E(): 2.7e-12, 48.18% id in 110 aa" FT /protein_id="CAE36072.1" FT /translation="MIDIRNRISLRPSPRHQIVISIRSRETTDAPAISAHRPIQGLGPQ FT GPPRKTSGPFLAKILRQSARLQAEQTTDNPINSFVQIIVLALIIFFAQRRTSGLGARLA FT GGIAFDADIQEYGAGYCGHVVNPKTTRRDMQSGMMVTAGRTNHMIAGNTMWNPAYRQHV FT LQNMGKNWDRQRAAPSTVSDVHVASASASPSARPFHSWAHISPHYAWATPSVASRVRSC FT RTGRGGRPSGFALFLPPADRLHGFQRHQG" FT CDS 521841..522215 FT /transl_table=11 FT /locus_tag="BPP0489" FT /product="hypothetical protein" FT /note="No significant database matches to the full length FT CDS. Similar to the C-terminal regions of Escherichia coli FT serine/threonine protein phosphatase 1 PphA or PrpA FT SWALL:PRP1_ECOLI (SWALL:P55798) (218 aa) fasta scores: E(): FT 0.00078, 33.33% id in 102 aa, and Bacteriophage lambda FT serine/threonine protein phosphatase SWALL:PP_LAMBD FT (SWALL:P03772) (221 aa) fasta scores: E(): 0.016, 27.45% id FT in 102 aa" FT /protein_id="CAE36073.1" FT /translation="MDACVGDVRERIAACLSALPLAIEVETPSGVVSVVHADFPYDDWQ FT AIHGATFSSEDEDACLWSIDRYRMQYSQPVRNVRAVVHGHMTLRKPAQLGNVYYIDTDG FT WQDSGRFTLLDLHTLKSWPR" FT CDS 522859..523929 FT /transl_table=11 FT /locus_tag="BPP0490" FT /product="putative DNA primase" FT /note="Poor database matches. Similar to the N-terminal FT regions of Bacillus stearothermophilus DNA primase DnaG FT SWALL:PRIM_BACST (SWALL:Q9X4D0) (597 aa) fasta scores: E(): FT 7.9e-08, 26.62% id in 353 aa, and to Neisseria meningitidis FT DNA primase NMA1736 SWALL:PRIM_NEIMA (SWALL:P57028) (590 FT aa) fasta scores: E(): 5.9e-08, 25.41% id in 362 aa" FT /protein_id="CAE36074.1" FT /translation="MVLRRPSLSTAKPKLLSDQALARLRELPIADVASAVGITLRGNKA FT MCFNGHDTATPSFTVSKARNTWRCFGCGEYGDAITLVQKIHGLRFMDACNWLCHHFGII FT GGDVPYGLRAHSLSRVTSPKPVNPLPSAPSTSPDFELYTWLVARCGPVKASLGTTYLQT FT HGITPDLALRFGVVELIDPVRAYRELERHWGPDRIRSAGLSGSRRALSWSGYALIFPFK FT FDAITQYLQVRCLQISRKFLGLSGIPKPMFNSQRLSQLRPGSLLHICEGVPDAISMEGS FT GLAAVAVLGATSFRSEWVEELLPFDLVGVPDGDAAGEKFMKCLANEFRARSKSIRFVVP FT PEGMDASDVIARGKNA" FT misc_feature 522904..523197 FT /note="HMMPfam hit to PF01807, CHC2 zinc finger, score FT 8.1e-08" FT CDS 523892..525238 FT /transl_table=11 FT /locus_tag="BPP0491" FT /product="phage-related protein" FT /note="Poor database matches. N-terminus is similar to the FT N-terminal region of Bacillus halodurans transposase BH0224 FT SWALL:Q9KG88 (EMBL:AP001507) (418 aa) fasta scores: E(): 2, FT 25.42% id in 118 aa" FT /protein_id="CAE36075.1" FT /translation="MQVTLLREERMRSFLSQVCDQLNMRWAWEKVKRASVPGDIWIDEA FT DLAHFEVHLGHELRGLGDDLLSGRFRMSPIRPMVFPKNPDGDGNPRVRQYFHFTVRDQA FT WVAVVNVLGRYIDEQMPVWSYGNRLFRSAWIEEDIHGNKIRKIGPYRHSSGRIYRLFQQ FT SWPLFRRHIALAVSAAAHGYSKVDSLDDDEREELGFQRRMHRANQCPFVLADYWTNLPT FT GPNESDVYWASVDLEKFYPSIPLTACVDAISQFVPAELRPEVQRLLKTLTQLPLNLDGW FT TDAELKHIELDESRKTFHKIPTGLMVSGFLANAALLPVDQEVQKTLPRGRVAHFRYVDD FT HVILTKTFDDLITWIDHYKDVIDNLGSGASINPAKTEPKALGELLGTSDTSKRFAGSDL FT WNRAQKECRLDPEFPTPLMTKTIALVSAIGKTDFTALEDNELSILPQQL" FT CDS 525245..527143 FT /transl_table=11 FT /locus_tag="BPP0492" FT /product="phage-related protein" FT /note="No significant database matches" FT /protein_id="CAE36076.1" FT /translation="MLVDLPEAEIPARTRLAFAATRLARVAEARLASPETLDIRHGGSG FT QSRTTRTQATSRYSGGLSLDPIAGLTGISDSQIHARLNSIADRVFGLIRKVLRERPDRV FT RLWTHALTIARRLGATGLELLFDDIDRYASDPVNRLAASYILGNSYAVLAAETVRAAQL FT LVDTNAAGWRRAAALRSLRDIAKFTNQCQPKTGRWFVQKSLNQFFVGVYCATVLLEQYS FT GSLQLLGKPLNQTFVDKGRELLAGHEVLPDLRVALAWWGCKFDLRKPVRRASELIVHLG FT TLVEALPESDDLWTFFPADAPITPLVRIASATKSGQMKQEGWWFDAMMGRLDYRDMEQV FT ATLSPEASRVWKSFEESEAGKFLPLPVWATMIWKSCDPRITTEWRLGEWTCLEIVRQAA FT LLLSSTTQTLDQDYLERASRKDIDTRSHCAHPLNFALPRHLIDTTAVSWQEWKQKLREP FT GTGVLRQVPQRRQIYDRRYAPLVVSEIGSAQNPIRGLGLCLFALLSRSFLLPAQWNGLG FT HESMLRHLPQLLRDEISYSSATLGILEACLQPRTAENVFANLYQAWSPGSDDDTEHDPV FT SLIDTADLARVISIAQNELEANQISTFNQQSRQVTPVNLMHLTDVDWKRYFEKGPA" FT CDS 527161..528087 FT /transl_table=11 FT /locus_tag="BPP0493" FT /product="hypothetical protein" FT /note="Poor database matches. Similar to Bacillus FT halodurans hypothetical protein BH1047 SWALL:Q9KE11 FT (EMBL:AP001510) (271 aa) fasta scores: E(): 0.18, 22.17% id FT in 257 aa" FT /protein_id="CAE36077.1" FT /translation="MVEVLTLGVIQTTLDSTAAWNTDSGEPKISASEDSRAWYEIRRAM FT RALADHEDQPRIILLPELALPRTRLDDFERLVCSMNALAIVGVDYRLNHRTKSAKNEGL FT VLVPRNFWKRTPSRYAARVWFGKRDPAPAEASGFKEYMPPWAFHSDPNVYVFDAGPYGR FT IGVSICYDFMDIERALLYRGRVHHLFVIAYNRDVKLFESLAVSLSRTAFCNVVVCNTGY FT FGGSLVVSPYYEAFKRIGYSVDGGKVFTAQCVPLPVRDLDAAIHGFDTKPNATYKHLPP FT GFTTSMDHTAALPEGPSAVAIPLFTSD" FT CDS complement(528255..528695) FT /transl_table=11 FT /locus_tag="BPP0494" FT /product="hypothetical protein" FT /note="No significant database matches" FT /protein_id="CAE36078.1" FT /translation="MLGGQSKKRADALVEAGLLTKRDTEVKAMFGNKMEPATEYQVTDT FT GKKFLVANGANTMAGQDAFCSGKYTVVEVSNFTEPSDMMGVKLSQVNYRYKVEGADDWA FT KSESMRANYKNFAERTQGDIQGKAAVILTNDGWMHERLFKRG" FT CDS complement(528774..529124) FT /transl_table=11 FT /locus_tag="BPP0495" FT /product="putative integrase" FT /note="No significant database matches to the full length FT CDS. Similar to the C-terminal region of Ralstonia FT solanacearum putative integrase/recombinase protein RS05241 FT SWALL:Q8XZ52 (EMBL:AL646065) (354 aa) fasta scores: E(): FT 0.026, 42.3% id in 78 aa" FT /protein_id="CAE36079.1" FT /translation="MGARRAHDRRSGLGPRLAGHLDKNGKLRPHGKVFFGEPGRDRIRR FT PYLFYEAWTDAKRAAGLEDFRFHDLRHEAVSRFVKARLSDREVSAISSLALTLAACGSA FT KDANKSNFSKTI" FT tRNA complement(529388..529472) FT /note="tRNA Leu anticodon CAA, Cove score 75.82" FT CDS 529634..531541 FT /transl_table=11 FT /gene="htpG" FT /locus_tag="BPP0496" FT /product="heat shock protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0074" FT /protein_id="CAE36080.1" FT /translation="MSQTTTNSASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNA FT SDACDKLRFEAIDQPGLLDGDGELAIRVDYDKAARTITISDNGIGLSRDEAVANLGTIA FT RSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADKVTVLSRRAGLAANEAIRWESD FT GQGEFSIAPAEKAGRGTDVVLHLRADEDELLNGWKLREILRRYSDHISLPIRMAKEDWD FT AEKGEQVKGDELETVNQANALWTRNKSDITDEQYREFYKTVSHDYDDPLAWTHNRVEGR FT SEYTQLLYVPRHAPFDLWDRDARRGVKLYVKRVFIMDDAEQLLPSYLRFVRGVIDSADL FT PLNVSREILQESRDVRAIREGSAKRVLSLLEDMAENKAEDYATFWTEFGQVLKEGTGED FT AANRERIARLLCFASTHDGEQAQTVSFADYVGRMKDGQDKIYYVTADTFTAAANSPHLE FT IFRKKGIEVLLLSDRVDEWMLSYLREFDGKSLVSVAKGGLDLAELADEEEKKRQSEVAE FT TFKPLVERLQQALAEQVKEVRVTQRLVDSPACVVVGQNELSPHLLRMLKAAGQEAPEVK FT PVLEINPDHALIARIRDASDAEFGDWAALLLDQALLAEGAQIADPAAFVKRLNGLLLKA FT " FT misc_feature 529724..529753 FT /note="PS00298 Heat shock hsp90 proteins family signature." FT misc_feature 529730..530200 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 5.8e-12" FT misc_feature 530207..531535 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00183, Hsp90 protein, score FT 3.3e-177" FT CDS complement(531831..532451) FT /transl_table=11 FT /locus_tag="BPP0497" FT /product="probable glutathione S-transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0075" FT /protein_id="CAE36081.1" FT /translation="MLKIWGRLSSVNVQKVMWAVRELALPHTFIEAGGPFGGLDTPEYR FT RMNPNRKVPLINDGGFILWESNAIVRYLGARYGEGAISPADPCVRADADRWMDWQTTEW FT QPSMLPAFMGLVRTAPEQRDAAAIEASARQAGKIALMLENALAGRDFIAGPQFSMGDIA FT LGCAAHRWLGLPIERPATPHISAWYRRLMMRPATQGILTLPLA" FT misc_feature complement(531867..532202) FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain, score 1e-09" FT misc_feature complement(532227..532448) FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal domain, score 6.3e-06" FT CDS complement(532483..533064) FT /transl_table=11 FT /gene="ampD" FT /locus_tag="BPP0498" FT /product="N-acetylmuramoyl-L-alanine amidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0076" FT /protein_id="CAE36082.1" FT /translation="MQRLLLDRHGWLIPGPAVTRAPSPNVNARPAGTQISLLVIHNISL FT PPSQFGGPYVADLFLNRLDYSADPWLERLRGLHVSAHFFIRRDGAIIQFAATEARAWHA FT GVSRFRGRDNCNDFSIGIELEGTDILPYADAQYATLARLAQVLRARYPLADARGHEHIA FT PGRKTDPGRAFNWVRFGRESGFPRRNLPPV" FT misc_feature complement(532531..532902) FT /note="HMMPfam hit to PF01510, N-acetylmuramoyl-L-alanine FT amidase, score 0.0031" FT CDS complement(533150..533401) FT /transl_table=11 FT /locus_tag="BPP0499" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0077" FT /protein_id="CAE36083.1" FT /translation="MGKLIFWFVVILAVLFIARLAGARAASKRAPRAEPPRPAQDAASQ FT PMVRCAHCGVHLPHSEAVLLGGQTWCSSDHARRGADRG" FT misc_feature complement(533333..533389) FT /note="1 probable transmembrane helix predicted for BPP0499 FT by TMHMM2.0 at aa 4-23" FT misc_feature complement(533333..533401) FT /note="Signal peptide predicted for BPP0499 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.486 between residues 23 and 24" FT CDS complement(533403..534326) FT /transl_table=11 FT /locus_tag="BPP0500" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0078" FT /protein_id="CAE36084.1" FT /translation="MIERGRLGAASRRRATSAHGPIQTTVFMSSGIVFHAVAALAYAVL FT AGSLWRRLQGRGSVDQASKLTRTGLLGALALHGVALQQAMLGTQHLYIGWALALSAAVW FT LGLVVFWLESLLIRIDGLQLLLLPAAAIVTAIAALFPQAQLVPHANNPWLRAHLLIALA FT AYGLITIAALHAMLIALLDRHLHRPLDAPAERSIVGRVLDAQPPLLVQERLLFRVIWIG FT FVVLTLAVGSGSVASITLTGKFLPFDHKTIFTLLSWATFGVLLLGRHIRGWRGRVALRW FT TLTGFAFLILAYTGSRFVLEVILHRG" FT misc_feature complement(join(533430..533495,533517..533573, FT 533604..533669,533793..533858,533889..533954, FT 533991..534056,534069..534119,534183..534248)) FT /note="8 probable transmembrane helices predicted for FT BPP0500 by TMHMM2.0 at aa 26-48, 69-86, 90-112, 124-146, FT 156-178, 219-241, 251-270 and 277-299" FT CDS 534351..535760 FT /transl_table=11 FT /gene="ffh" FT /locus_tag="BPP0501" FT /product="signal recognition particle protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0079" FT /protein_id="CAE36085.1" FT /translation="MLDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVAL FT PVVRDFVARVKEKALGEEVAGSLSPGQALVGVVHKELTSLMGGDLGEHAGELSLATQPP FT AVILMAGLQGAGKTTTTGKLARWLSEGQHVQGGRKTGKKKVLVVSADVYRPAAIEQLKT FT VAAQVGVDFLPSDVSQKPEDIARNAIDHARRHHYDVLIVDTAGRLGIDEAMMREIRALH FT DLVKPIETLFVVDAMQGQDAVNTARAFGDALPLTGVVLTKLDGDARGGAALSVRHVTGK FT PLKFVGVSEKLDGLEPFHPERMAQRVLGMGDIVSLVEQAQKNIDIAEAQKLASKIKSGN FT KFDLNDFRDQLGQVKKLGDMGSLLEKLPAQFQQAAGQLQGGQAEKQLRRTEGILNSMTP FT GERAKPELIKASRKRRIAAGAGVPVQEVNRLLSQFEQMQGMMKQMKKGGMAKMMRAMGG FT MKGLGRFGGMR" FT misc_feature 534351..534611 FT /note="HMMPfam hit to PF02881, SRP54-type protein, helical FT bundle domain, score 1.4e-27" FT misc_feature 534654..535280 FT /note="HMMPfam hit to PF00448, SRP54-type protein, GTPase FT domain, score 7.2e-109" FT misc_feature 534681..534704 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 535194..535235 FT /note="PS00300 SRP54-type proteins GTP-binding domain FT signature." FT misc_feature 535371..535673 FT /note="HMMPfam hit to PF02978, Signal peptide binding FT domain, score 4.4e-40" FT CDS complement(535893..536444) FT /transl_table=11 FT /locus_tag="BPP0502" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3689" FT /protein_id="CAE36086.1" FT /translation="MKLQDVTSCCITHAAAAPIIVFAINAFFNAQGRKMGLLNFIKEVG FT EKLFGASEAKAATADELKKELDKHGLSAEGLDISVDGDKVTVKGSAASTEAAEKIVLAL FT GNTVGVAQVDNQLQTAQAAPAAVMYTVQKGDTLWKIAEANYGKGKGAKYPTIFEANKPM FT LSDPDKIYPGQVLRIPPLAE" FT misc_feature complement(535908..536060) FT /note="HMMPfam hit to PF01476, LysM domain, score 2.2e-14" FT misc_feature complement(536358..536423) FT /note="1 probable transmembrane helix predicted for BPP0502 FT by TMHMM2.0 at aa 7-29" FT CDS complement(536484..536684) FT /transl_table=11 FT /locus_tag="BPP0503" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3690" FT /protein_id="CAE36087.1" FT /translation="MHITLNGEAREFPLQTTVVELLETLGYQGKRVAVERNGEIVPKSK FT HGDTLLDDGDQIEIVVAVGGG" FT misc_feature complement(536490..536681) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02597, ThiS family, score 3.6e-16" FT CDS complement(536695..537642) FT /transl_table=11 FT /locus_tag="BPP0504" FT /product="prolyl iminopeptidase" FT /EC_number="3.4.11.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3691" FT /protein_id="CAE36088.1" FT /translation="MLYPPIEPYRQGTLDTGDGHQVYWELCGNPQGKPAVFLHGGPGSG FT CSPVHRQLFDPRRYNVLLFDQRGCGRSLPHASLKNNTTWHLVADIERLRAEVMGAERWL FT VFGGSWGSTLALAYAQTHPQRASELVVRGIFGLRRAEVQWFYQEGASWLFPDRWEEYVA FT PIPPEERGDLIAAYHRRLTGDDPAEQLRAAKAWSRWEDHTITLLPSPRHQQSHAADRAA FT LAFARIENHYFVHAGFMEEGQLIRDAHKLHGIPGTIVQGRYDVCTPARTAWDLHRAWPQ FT AQFHLIPDAGHAFDEPGILARLIQATDTYAANPA" FT misc_feature complement(536701..537468) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 7.1e-20" FT misc_feature complement(537031..537057) FT /note="PS00037 Myb DNA-binding domain repeat signature 1." FT CDS complement(537643..538473) FT /transl_table=11 FT /locus_tag="BPP0505" FT /product="putative methyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3692" FT /protein_id="CAE36089.1" FT /translation="MMNYTCSQRPAGRGRGPTTIQPMNTNTPAHPPEGAPLSEATQAAL FT ASAEHAPDSPGATHIRSFVHRRGHITQRQRDALEQLMGKWSVPYAPRPLDMAATFGRQA FT PTILEIGFGMGETTEKIALARPGDNFLGVEVFNAGVGSLLHRIEESAIANLRIVQHDAV FT EVVRDMIAPDSLAGVHVYFPDPWPKKRHHKRRLLQPPFVALLASRLAPGGYLHCATDWE FT DYAVQMLEVLGGEPLLRNTADGYAPRPDFRPQTKFETRGLRLGHGVWDLMFKRA" FT misc_feature complement(537649..538221) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02390, Putative methyltransferase, FT score 1.3e-74" FT CDS 538500..539399 FT /transl_table=11 FT /locus_tag="BPP0506" FT /product="LysR family regulatoy protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3693" FT /protein_id="CAE36090.1" FT /translation="MNPARFDLVTLALFVAVARQGSISAGARQSHLAVGVASKRISDLE FT NALGTPLLYRTAAGVELTDAGQACLAHALRVLQEVEHMAGVLSDFAQGVGGQVRIAANT FT SSITQFLPEDLAGFMQRHPAVRIHLEEQNSSDIVTAVAENRADVGIFADRTPAAGLTTV FT PYRLDELVLITPPRHPLAARAQVAFADTLDCDYVGLPPATSLATRLADESARLDKSIRL FT RIQVRSFDAICRMVVATGGVGILPRIAAEPHARSMQVRLIPLADDWAQRWLLLGVRDLD FT SLPVAARLLVRSLAEGAA" FT misc_feature 538500..538574 FT /note="Signal peptide predicted for BPP0506 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.653) with cleavage site FT probability 0.190 between residues 25 and 26" FT misc_feature 538521..538700 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.9e-15" FT misc_feature 538563..538655 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 538683..538718 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT misc_feature 538770..539393 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.1e-36" FT CDS 539443..540708 FT /transl_table=11 FT /locus_tag="BPP0507" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3694" FT /protein_id="CAE36091.1" FT /translation="MPIPAARRLPAHCFSISSHKYGDDMAGQILAGIRVLELGQLIAGP FT FAAKTLADFGAQVVKIEPPGQGDPLRKWRLLHEGTSVWWEAQSRNKQSVCVDLRQPEGQ FT DLVRQLAAQADVLIENFRPGTMEKWGLSWEALHALNPRLIMLRISGYGQTGPKAQEPGF FT AAIGEAMAGLRYLNGEPGRAPVRAGLSLGDTIAGLHGAMGVLLALYQRDARGGQGQVID FT AALYESIFNLSESLLPEYSVFGAVREPAGAALPGIAPSNAYPCRDGYVLIAGNGDAIFQ FT RLMQRIGRADLGDDPELAHNDGRARRAHELDAAIGAWTAQRDIGSVLEAMRAAGVPAGR FT IYSVADIAQDPHYQARGAIARLRAASGIDVDMPAVFPCLSDNPGAIRERAPLLGEHTDA FT VLEEAGLDDAARAGLRARGVIA" FT misc_feature 539722..540291 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.9e-61" FT CDS 540705..541652 FT /transl_table=11 FT /locus_tag="BPP0508" FT /product="putative hydroxymethylglutaryl-CoA lyase" FT /EC_number="4.1.3.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3695" FT /protein_id="CAE36092.1" FT /translation="MNGPQRIEINEVGPRDGLQIERALVATDDKVAFVDALSACGFARI FT EVTSFTSPKAIPALADAQDVMRRIARRPGVVYTALIPNIRGLERALQAGTDEMNLVMSC FT SETHNRANLRMTRDQSFDELAAILRRAGEAGVPCNVSLSTAFGCPFDGDVPADDVMRLA FT RRLADAGAQGITLCDTTGMAYPTQVARLCETFQRALPGAALTVHLHNTRGMALANAVAA FT WQTGVTRFDAAAGGLGGCPYAPGASGNVNTEELVHMFACMGVATGVALAPLLDIVRGLP FT GLVRRALTNPLLAAGPRLATHQPPAWLAERFPAA" FT misc_feature 540747..541574 FT /note="HMMPfam hit to PF00682, HMGL-like, score 3.7e-48" FT CDS 541700..542695 FT /transl_table=11 FT /locus_tag="BPP0509" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3696" FT /protein_id="CAE36093.1" FT /translation="MHIAKLRLLRGAALAATLAAGATAAHAGDYPERPVSLIVSAAPGG FT TTDIAARLIAQPLGQALGQALGQTVVVDNKPGASGGIAGQMVARAQPDGYTLLLQYSGF FT QAITPHVSTNLGWDPIKDFAPVANVLSAPQVVVVRPDLPVKTLKDLVDYAKANPGKLNY FT ASSGNGSLQQVATELLNQMAGIQITHIPYKGTGPALNDLLGGAVDLTITTPPPLLGYIA FT AGKLRALAVTGDKRLPSLPDVPTAAEAGYPDLIVSSWFAMYAPAGTPPAIVEKLSGEIR FT KIMATDAFRQKAAEQGAEARYMDPKQLGAYTQEELDRWGKVVKAAHISAN" FT misc_feature 541700..541780 FT /note="Signal peptide predicted for BPP0509 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 27 and 28" FT misc_feature 541859..542683 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 5.8e-116" FT tRNA 542793..542866 FT /note="tRNA Gly anticodon CCC, Cove score 77.64" FT CDS complement(543029..543370) FT /transl_table=11 FT /locus_tag="BPP0510" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3697" FT /protein_id="CAE36094.1" FT /translation="MKQSTFTQARMAFDTTAPLEEVCRKMGMFEAAFYAWLHEGNRIAV FT RYAYEWRDDAGNWFRSYGNEDWEFEVDGLMRRRHACINDMPIQESERKFHWPLGRRPDG FT HPGLSDLGL" FT CDS 543562..544359 FT /transl_table=11 FT /locus_tag="BPP0511" FT /product="putative transcriptional regulator" FT /note="Similar to Escherichia coli acetate operon repressor FT IclR SWALL:ICLR_ECOLI (SWALL:P16528) (274 aa) fasta scores: FT E(): 1.4e-07, 26.86% id in 201 aa, and to Streptomyces FT coelicolor putative transcriptional regulator SCAH10.11c FT SWALL:Q9RKU6 (EMBL:AL132824) (270 aa) fasta scores: E(): FT 1.8e-11, 31.86% id in 204 aa" FT /protein_id="CAE36095.1" FT /translation="MSEQNEKEGAVGSLERGLLIIRVLLDAPGPMSLAELAQELALGPS FT TVHRLLGTLTKLGQVVREPRGKRYLAAPQVLASLSFQHPITLVRLACRSAIEELRERTG FT ETSAFVLFIGYERLVQDFVIGQRLLSPNYQTWLRSPMHGSASGKLLLSTVPENNWVDLI FT GHEPYQAHTPSTITTYEEMVAEIQAIRRQHYCVSKNEGYEGVSAFGYPVVVLGKTVGCI FT TLTVESASLNESREAFLIQEMLRCVKSIQAVSGSLKLLHDWLF" FT misc_feature 543562..553889 FT /note="low %GC region" FT misc_feature 543802..544320 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 1.7e-07" FT CDS 544400..545581 FT /transl_table=11 FT /locus_tag="BPP0512" FT /product="putative dioxygenase subunit" FT /note="Similar to Burkholderia sp. TH2. 2-halobenzoate FT dioxygenase large subunit CbdA SWALL:Q9AJR2 (EMBL:AB035324) FT (465 aa) fasta scores: E(): 5.9e-19, 25.58% id in 383 aa, FT and to Methylosulfonomonas methylovora hydroxylase alpha FT subunit MsmA SWALL:Q9X404 (EMBL:AF091716) (414 aa) fasta FT scores: E(): 2.2e-48, 42.04% id in 402 aa" FT /protein_id="CAE36096.1" FT /translation="MSRSSQQWLARPDLPDDHYVDVDIYTSQQIFDDELKNIFAKTWKF FT AYHESEIPNLGDYRALNHAGIPVFVIRGEDGSVRAFVNACPHRGSKLVTDVRGNAKNLT FT CFFHLWTFDDKGRCIEITREDGYAQSGVCKGKQGLRRIRCHNKFGMFFINLDDDADDFD FT QHIGNVMDCLEEVMTTKPLEVFHHHQVRMNANWKQWHETNMELYHEWGHIVNRSTAIAA FT DGYHNRTWRIHENGHGTLDPMEVSYDNYKGWETRSGHLLPGLGPGELRMVDLFPNTTIL FT VRATAIRIDTSTPIAPGITLLEQRGLGILGEPEQDRKVRVKHHNEIWGPLGRNLAEDVI FT FVETVSETHRREASKWGLFARHEGLKAQDDEIMRAYYRVWGRMMGKSASNPLG" FT misc_feature 544523..544846 FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, FT score 4.9e-22" FT misc_feature 544652..544723 FT /note="PS00570 Bacterial ring hydroxylating dioxygenases FT alpha-subunit signature." FT CDS 545639..546097 FT /transl_table=11 FT /locus_tag="BPP0513" FT /product="putative hydroxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0070" FT /note="Weakly similar to Marinosulfonomonas methylotropha FT hydroxylase beta subunit SWALL:Q93NZ6 (EMBL:AF354805) (181 FT aa) fasta scores: E(): 8.7e-05, 26.25% id in 160 aa, and to FT Pseudomonas aeruginosa ortho-halobenzoate 1,2-dioxygenase FT beta-ISP protein OhbA SWALL:Q9Z5W2 (EMBL:AF121970) (176 aa) FT fasta scores: E(): 0.0079, 22.06% id in 145 aa" FT /protein_id="CAE36097.1" FT /translation="MSDYREKIGGFLYLLSEKLDEELYEDFLSLCDADFHYQVSAFSPE FT LGKEIVWLDHDYKEIRNLMLLIHQHVRMKGNFTRNISMVRIRTAEENCYEVRSQIMVMH FT TDQYGTTKLFAIGNYTDKVTRKQDQLRLLERKVYLNTRDLGSGIHVPI" FT CDS 546118..547299 FT /transl_table=11 FT /locus_tag="BPP0514" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0069" FT /protein_id="CAE36098.1" FT /translation="MTHSNHNSMRRSTLRKLTGLGMGTILTAGAGAAAVIAPFNSFAKS FT ESKAAYRFRFGTIYTPAAAEYTAPGIYDFVERVQRKSDGEIAIQLIDKAQACSEDQCAQ FT RVMNGILHMGSSTFQNTGATMPYSVALEWPFLWKSRVAYHNFLLSKESNRLYRGVLRNK FT YGVVPLYASGGMRNIMMGKKYSEAADITSPDALNGAKIRITNSEMISNFAKSMGMAPIP FT LAWGELLEGLKSGLVDATETYPSAAAGFGMYSVLSQDIDVQFCPGYSMIFMAAKTFDKL FT PERLQELIYESAYESMVEAYQTAIIAESTLVGIGPNPSPDSAYQRGKIRQIKLSPEQHA FT AFKERGSVENNLQLYANLRKQLDDIARIDVYGALSEYAKNTSSTELMAEKWWT" FT misc_feature 546118..546246 FT /note="Signal peptide predicted for BPP0514 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.800 between residues 43 and 44" FT misc_feature 546166..546234 FT /note="1 probable transmembrane helix predicted for BPP0514 FT by TMHMM2.0 at aa 17-39" FT misc_feature 546280..547203 FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 4e-11" FT CDS 547360..547896 FT /transl_table=11 FT /locus_tag="BPP0515" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0068" FT /protein_id="CAE36099.1" FT /translation="MTLKKICTNANLDRVLLKIENSVMIVTYLILICLVGGETIRRAIF FT QEQATWGPEIAMYSFIWLSWFAMARHCRYGTNLGFTKIRNSLPAPVRRVLEVIDAILWL FT AIGSVVFWSTAELISSNFVTEQMVMGTPIPAWIINLGVPLGWAFSMLRIVQRLWLVLFQ FT WDFLENERANNYLSA" FT misc_feature join(547420..547479,547507..547566,547627..547695, FT 547738..547806) FT /note="4 probable transmembrane helices predicted for FT BPP0515 by TMHMM2.0 at aa 21-40, 50-69, 90-112 and 127-149" FT CDS join(547927..548484,548486..549199) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0516" FT /product="integral membrane protein (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0067" FT /db_xref="PSEUDO:CAE36100.1" FT misc_feature 547927..548007 FT /note="Signal peptide predicted for BPP0516 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.431 between residues 27 and 28" FT misc_feature join(547945..548013,548083..548151,548212..548280, FT 548338..548406,548425..548493,548563..548631, FT 548644..548697,548725..548784,548896..548964, FT 549007..549075,549112..549180) FT /note="11 probable transmembrane helices predicted for FT BPP0516 by TMHMM2.0 at aa 7-29, 53-75, 96-118, 138-160, FT 167-189, 213-235, 240-257, 267-286, 324-346, 361-383 and FT 396-418" FT variation 548479..548485 FT /note="(T)7 in parapertussis; (T)5 in pertussis" FT CDS 549234..550292 FT /transl_table=11 FT /locus_tag="BPP0517" FT /product="oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0066" FT /protein_id="CAE36101.1" FT /translation="MQQEQRILFKNDAGDYAAVAAGEESVLQAGLRQSVPLNYHCASGS FT CGSCKARLIQGALKVHTGTDFIQVSHAADQVCEYPEVHLCQSHAVSDCVFEALYDKNVP FT PDLVTPKHYAASLSDVRPLGSGLYRLLADFDDSIRFLPGQYVMLATEAGGRARAYSVAN FT FAQNSRQLEFILSCNPNGAMSPQLCDINNIGMQLQGYGPLGKAYIRPSKDKEIVMLVGG FT SGVSVALSTLEWAISSHYIDDRHLTIFWGVRDTSPIDLIGVLNRYAAVHSNLQVAVCSD FT ISPSVQDRARFPHVEFFKGYPADHIVNDASIRWEDKEVYISGPPPMVDHTVRQLMINTE FT IDAQDIKCDSFV" FT misc_feature 549255..549506 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain, score 0.16" FT misc_feature 549354..549380 FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature 549573..549854 FT /note="HMMPfam hit to PF00970, Oxidoreductase FAD-binding FT domain, score 0.00016" FT misc_feature 549870..550235 FT /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding FT domain, score 0.00034" FT CDS 550393..550710 FT /transl_table=11 FT /locus_tag="BPP0518" FT /product="putative ferredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0065" FT /protein_id="CAE36102.1" FT /translation="MTSANLVKACEENEISEGDIVEIKINGLDIILMRNGEQFFAAQAI FT CPHMDEKLCNGLFKKTKLICTKYLWQWDLETGKPLGAAEKPIQIYKTTVKEGVVYVSVD FT N" FT misc_feature 550405..550683 FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain, FT score 1.4e-08" FT CDS 550723..551304 FT /transl_table=11 FT /locus_tag="BPP0519" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0064" FT /protein_id="CAE36103.1" FT /translation="MAKKLLMLVGDYVEDYEAMVPFQAFQALGYQVDAVCPDKAAGDYV FT MTAVHDFEGAQTYSEKPGHRFTLNASFDQIEMEKYDGLVVPGGRAPEYLRLNSKLLALV FT RYFFEAKKPVACICHGIQILSTAGVLEGYKCACYNTCAPEVTAAGGTYVDIPMDEAITD FT RNLVTAFAWPSHPAWIAQFATLLGTKITHN" FT misc_feature 550729..551283 FT /note="HMMPfam hit to PF01965, ThiJ/PfpI family, score FT 4.6e-50" FT CDS 551361..552335 FT /transl_table=11 FT /locus_tag="BPP0520" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0063" FT /protein_id="CAE36104.1" FT /translation="MNWITRTVVGAALGILGALGGANAATYPDKPITLVVPFPPGGGTD FT IMGRALAEQLGRELKQPVIVVNRSGAAGNIGAASVARANNDGYTLLMTSAPFAIAPAIF FT PDLSFHPIKDFTAITQISMVPLLVVTRANSPLNSISDLVAAAKQNKESISFATFGVASP FT PHLTGQKIQELAGIKMLHIPYKGGSEAITELLSGQVSIGILDVISMMPMVKDGQLKALA FT ITGPVRAQALPDVPTLVEAGISYDDVGWFGLFAPAGLSPAITQILNVAVNKILARPEMQ FT KLIVASGTVPITPSTSPGEWQTLFNENVRAWGASATEALKEDE" FT misc_feature 551361..551432 FT /note="Signal peptide predicted for BPP0520 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 24 and 25" FT misc_feature 551379..551438 FT /note="1 probable transmembrane helix predicted for BPP0520 FT by TMHMM2.0 at aa 7-26" FT misc_feature 551499..552323 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.1e-77" FT CDS complement(552366..>552719) FT /transl_table=11 FT /locus_tag="BPP0521" FT /product="putative transposase (partial)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0063A" FT /protein_id="CAE36105.1" FT /translation="KGIAIRYIQPSKPNQNAFIERFNRTYRTEVLDAHLFANLELVQAI FT TDQCLVDYNQYPYAQIAGWPPAEAIHASVNPRSGRLSDNVYLTGGGLRQQTLMAHCLCL FT DQGPFERPSWSLF" FT CDS 552759..553700 FT /transl_table=11 FT /locus_tag="BPP0522" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0062" FT /note="No significant database matches to the full length FT CDS. N-terminus is similar to the C-terminal region of FT Rhizobium loti putative aminotransferase MLR6024 FT SWALL:Q98AF4 (EMBL:AP003008) (429 aa) fasta scores: E(): FT 5.4, 27.51% id in 149 aa" FT /protein_id="CAE36106.1" FT /translation="MDTELPSLEHADGGAVIGGAVPELTRAFRMSEVEFRCDFLWDSRL FT VSRPRLLGAFRIRQMAALMLDWLSSEAEVLKRIVANRQALASTMHFALDSAFPYPEHAF FT AQSVYVGINIPRAKLQLSPDQRPGDVDCLIVPFSDNEILLERTIAIEAKIVRPSISNPG FT RNANTMGRAQVRGLLCDGFPFVGLVHISVPESMPSHMHWEVPEISDIAGSNGELIETGE FT YFIFDPFPLASARRQEGRVLALGLPVEVGYRVIAMTLSNNGERFCGFTIGEARAGARNP FT VVSHRVLEAVRMLLTTEPRLFEVVHWFNEVGT" FT CDS 553890..554303 FT /transl_table=11 FT /locus_tag="BPP0523" FT /product="putative DNA-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0061" FT /protein_id="CAE36107.1" FT /translation="MPTSEQRNSSLRVAMPRPVERALQRLGQDISTARRVRRLSQEDLA FT QRVGTSLSTVRRMEDGHPGTALHTFLRALHVLGRLDDVLRVMATENDVLGMELVREQLP FT QRVHTVRGSKPRVGRSAAAKEGASDDADELEGF" FT misc_feature 553977..554141 FT /note="HMMPfam hit to PF01381, Helix-turn-helix, score FT 0.0019" FT CDS 554339..555529 FT /transl_table=11 FT /locus_tag="BPP0524" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0060" FT /protein_id="CAE36108.1" FT /translation="MHLGSAGQVVGRLYLGSGKRSAFSYDERWLRDARFFTLSPDLLPV FT LSVQHPQEVFFRALEDTAPDSWGERVIRRAHARLRQQDGETPPLEPVDFLMWVDDEARV FT GALRLFDPHAKVYLRSGATPGHVPPLVELDKVVQAARALEAGTETARDLQYLLGQGTSL FT GGARPKSSVRDTDGRLALGKFPSQADRRDVIRGEVLAMHLAAKAGIKVAAARVELIGGT FT AVAIIRRFDRTDDGGRIPYVSAATMLQSDGRDTVHAYTELVDVLLREGADPIADIHQLW FT RRLVLNFLICNTDDHLRNTGFLYDARNHGWRLSPAFDLNPMPGDRRESKTWLTEDSGPI FT ESRDMLMEGAPYFRLAAEEAAAIWTEVAQAVGSWRVVARGLGMQGTDLVDFEPAFA" FT CDS complement(555673..556602) FT /transl_table=11 FT /locus_tag="BPP0525" FT /product="regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0059" FT /protein_id="CAE36109.1" FT /translation="MDLLDPDLNRLASRLRFRHFQLLLTLAREGSLRAAAQEMHVTQPA FT LSRMLEEIEGVLGVQLFVRTSRGLSPTGHGIAATRSARQILEELGRVPQEINLGPQVAA FT LIRVGAPHFVAHSVMSRVISRLAALRPRVHVQLIERPVPELFAALQEGDADALVTTYAP FT QHIEAAKMPLHQEKLYESNYQLVAPPDHRFAKSRRPVPLAKLVNEDWILPAQDSMLRKE FT IDWVFRRAGLLPPVPVVEANNSTTSIQLVVAGIGLGFAHGETLQNVPPGTVAPIRISPS FT PASAQVALVYRAKRMNEKIQALRAALGL" FT misc_feature complement(555679..556308) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.4e-32" FT misc_feature complement(556375..556554) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 7e-22" FT misc_feature complement(556420..556512) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 556722..557705 FT /transl_table=11 FT /locus_tag="BPP0526" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 4.9e-34, 35.47% id in 327 aa, and to Comamonas FT testosteroni hypothetical protein OrfJ SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 1.4e-32, 38.39% FT id in 323 aa" FT /protein_id="CAE36110.1" FT /translation="MFPARRAFVVGMAALMLCAGAGADAREDWPARPIRVVTPFPAGGI FT NDTVIRIVCEKVAAALGQPIIVEVKAGAAGAIGTDFVAKSAPDGYTWLASSGPVFTAAP FT ALFQALPFDPLKDFRAAAMLATAPNILVVPPQLPVSNLRELVAYARQAPGGISYATPGA FT GSSAHLGTEAFMRDAGFSATQVAYRGAPPALLDLIGGRVQFMMVSASLAAAQIGAGKLK FT GLAVMDTRRFPGAADIPTVAEAGFNVEPVVPWFAIHVPARTSDAIVARINREVVAALAD FT PQVRASLGKAGAAAAEPAAPRQIDAAMQAETARFQALAREQNLAKQ" FT misc_feature 556722..556790 FT /note="Signal peptide predicted for BPP0526 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.447 between residues 23 and 24" FT misc_feature 556866..557693 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.1e-81" FT CDS 557702..559834 FT /transl_table=11 FT /locus_tag="BPP0527" FT /product="putative acyl-CoA synthetase" FT /note="Similar to Pseudomonas mendocina pimeloyl-CoA FT synthetase SWALL:Q9ZER2 (EMBL:AJ012480) (711 aa) fasta FT scores: E(): 5.1e-67, 34.83% id in 709 aa, and to FT Pseudomonas aeruginosa pimeloyl-CoA synthetase PA1017 FT SWALL:Q9I4V6 (EMBL:AE004534) (715 aa) fasta scores: E(): FT 2.9e-68, 35% id in 720 aa" FT /protein_id="CAE36111.1" FT /translation="MMGGSAVMTLIEEQAGRSASVVELMNPACVAVVGASEDRRKFGGR FT ILHLLNNQGFRGRILPVNPVRAEILGHQAYRCIMDLPQAPDLVILAIPRDLVVQAVSDC FT GDIGAKGVIVVASGFSESGDEGARLEQQLLAVAREKAVRIIGPNCVGVVSPAHGFSLAT FT TVSLVDRAPLPGHIGLISQSGAVMGTMIDRGISQNVGFSHCISVGNQADVDFCDFVDFM FT IDDPGTHVICTYVEGIKRPDLFLRAAGRAQAASKPWLLMKSGRTEAGAASAFSHTASLA FT SNQAILDGVCRQFGILQVDDVEGMLVAASGWNKYRDMRVRSVAVLSPSGGGCTIAADRL FT SDIGVPLARFSDRATAALAPLFDGPVRNPVDIGAANDGAAMGYVETIHRAALQDEQADL FT VLSVVTNAPVLTEVGKMIGDAARAVDQPLLAVVIPGGYAEGAREQLAAAGVLCTDSLDA FT AMRAIGAWHAWARRPAASSAVRPQGLPVPEPVGAGRLDEAGVKRLLGRYGIRVNEGRVA FT ATPDEVAAAAQALRAPYVVKVISEDISHKTEVGGVRLGLADGPAVRAAAVEMAAQVRQK FT RPDARVDGFLVQEFVRGELELLLGLKQDAQFGVTLAVGAGGTLAEILRDVLFAPCPVSR FT ESAGRLLERLKLAPLFGGVRGGPPLDVAAVVDTMVRLSWLGHDLRDSLQELDINPVLVL FT ADGAGCVAVDGRALSG" FT misc_feature 557771..558100 FT /note="HMMPfam hit to PF02629, CoA binding domain, score FT 5.9e-07" FT CDS 559831..560616 FT /transl_table=11 FT /locus_tag="BPP0528" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /note="Similar to Rhodococcus fascians enoyl CoA hydratase FT EchA1 SWALL:Q9ZHG2 (EMBL:AF063588) (275 aa) fasta scores: FT E(): 3.4e-26, 39.25% id in 242 aa, and to Mycobacterium FT tuberculosis hypothetical protein Rv0222 SWALL:P96404 FT (EMBL:Z92669) (262 aa) fasta scores: E(): 1.4e-26, 40.63% FT id in 251 aa" FT /protein_id="CAE36112.1" FT /translation="MRRSAPKTLFKFDRGKHMEVTYQSLDRVALVTINRPQRGNSMNPA FT VVRELAQAWERFSGGDDLVAVITGAGNDAFCTGADLKELPGEVWRALPNFAVPTDKPVI FT AAVSGRAVGGGCTLALYADMIVASESAQFIYPEAKIGIFQGIMGGFPRKLPYAAGLEWI FT TTGDPMSAQRAYELGFVNKVCKTGEQVEAALEMARKIAASAPLVVQAMKHLALKTLPAN FT PMETFYPQKGMLEAIARSQDAEEGLQALRDKRDPVFKGC" FT misc_feature 559915..560385 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 3.4e-35" FT misc_feature 560140..560202 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 560692..561669 FT /transl_table=11 FT /locus_tag="BPP0529" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni hypothetical FT protein Orf4 SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta FT scores: E(): 1.3e-37, 39.14% id in 304 aa, and to Comamonas FT acidovorans hypothetical protein SWALL:AAL86583 FT (EMBL:AY078159) (336 aa) fasta scores: E(): 5.5e-33, 37.86% FT id in 309 aa" FT /protein_id="CAE36113.1" FT /translation="MMPSLGRLSACLVMLGCLMGFSAAGAAAGFPAQPITLVVPYPPGG FT TADSLARVLAKSMGARLGVNMIVLNKGGAGTVVGTQFVANSAADGYTLLFTATPFAINP FT SLFEKLPYDTLKDFTVVSDIAETPLVVAAGSGTSINTLGELVDRLKTGKDNSYGSAGPG FT SSPHLVSELLLHEVNGEATHIPYQGSMPAVMDLVANRTTFMFDTPLLMLPLAKEGRLKL FT LAQTSTQRSPLLPTVPTLQESGYPNLSVTSWFVVAARSGAPRDVLEKLNSAINAALADP FT VVAGAYEAQGMIKTGGTLDKAQAKLQQEVKNWALAVQVSGAKVR" FT misc_feature 560692..560772 FT /note="Signal peptide predicted for BPP0529 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.453 between residues 27 and 28" FT misc_feature 560839..561657 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.4e-80" FT CDS 562130..562678 FT /transl_table=11 FT /locus_tag="BPP0530" FT /product="hypothetical protein" FT /note="No significant database matches" FT /protein_id="CAE36114.1" FT /translation="MREPTPELVARRRELVEATMTRVRAIEKQHGPTREALEAIKNELL FT ALARERDVFLTTEFKPAKRGTFKDFVAYRLNEEDGTGRAMYLSLALPGKSSPPHNHKNW FT AVLVGLVGAEENRLYEVDESGSFRQRDAIMVGQGVGDEPVWQLRFYERPLEDQVDREQF FT DPGTGKREMFPPNPNVKPS" FT CDS 562747..563739 FT /transl_table=11 FT /locus_tag="BPP0531" FT /product="conserved hypothetical protein" FT /note="Similar to Comamonas testosteroni hypothetical FT protein Orf4 SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta FT scores: E(): 3.8e-32, 36.85% id in 331 aa, and to Rhizobium FT meliloti hypothetical protein SMA1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 1.2e-30, 35.31% FT id in 320 aa" FT /protein_id="CAE36115.1" FT /translation="MAMKRREMLSLCGKSVIALGCGGLPAILRAQGRFPSKALTYVVAY FT TPGSANDILVRILAPELGTQLGQSIIVDNKPGAGGSIGMAAVAQSKADGYTLGLGSTAT FT MAINRALYKNLPYDPLRDFESVVKFASTANVLVVPAGGPAKTLADLKPRDGKSLMFSSP FT GNGTTQHLAGVLFSSTTKLPTEHVPYRGPAESVMAVASGEVDFSLASLPSALAQIRAGR FT LRVLGCTSLKPPSSLPQTVSLAEQGLPGFERTEVWFGLVVPSGTPDQARLALEQASVQV FT LGKQDVREKLEQAGYQPANPQSEGKFDPFVREQVAFWADLVKQAGASID" FT misc_feature 562906..563727 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.3e-82" FT CDS 563789..565378 FT /transl_table=11 FT /locus_tag="BPP0532" FT /product="putative sulfurtransferase" FT /note="Poor database matches to the full length CDS. FT Similar to Pseudomonas aeruginosa probable thiosulfate FT sulfurtransferase PA2603 SWALL:Q9I0N4 (EMBL:AE004689) (527 FT aa) fasta scores: E(): 9.6e-68, 44.46% id in 515 aa. FT N-terminus is similar to the N-terminal region of FT Agrobacterium tumefaciens hypothetical protein FT AGR_PTI_BX104 SWALL:AAL46325 (EMBL:AE009427) (395 aa) fasta FT scores: E(): 1.7e-39, 44.95% id in 307 aa" FT /protein_id="CAE36116.1" FT /translation="MSEVVSAQWLRQRLESGAECAVVDPREEGAHSVSPHLFHAVNLPL FT SQLELRVERLFPRRDVPIVVAGAGDALDERARRRLQELGYAGAVRLEGGSPAWAGLGLP FT LFTGFNTASKAFGEYVEHGCATPSISADELREMVASGRPLVIVDSRTPAEHRRATIPGS FT VSAPGAELVLRYAELAPDPHTTLVVNCAGRTRSIIGAQSLINAGVPNPVFALRNGTMGW FT ALAGHKVETQSARQAPEPGAATLALAQQRAAAVRRRFGIGEIGAAELQRLRAGGERTVY FT LFDVRTQQEYERGHVPGAVHAPGGQLVQATDSYVAVRNARIVLYDHHGVRDVMTGSWLR FT QMGHEDVVTLRADAVSAAQLAAGPQAVRVAGLDGARARRLAPAEAAGSLAQYTVVDVGA FT YRDYQAGHLPQAYWVTRARLAEALDGLPADRPLLLVSPDALLAQLACADVAASAARPVY FT VLEGGMARWRAEGRPVEEGDGRPLHEPDDAFVKPFEARDRELSMQAYLDWEVGLLDAVQ FT RHPAIRFDLYKE" FT misc_feature 563804..564091 FT /note="HMMPfam hit to PF00581, Rhodanese-like domain, score FT 3.1e-09" FT misc_feature 564176..564463 FT /note="HMMPfam hit to PF00581, Rhodanese-like domain, score FT 0.00028" FT CDS 565419..566309 FT /transl_table=11 FT /locus_tag="BPP0533" FT /product="LysR family regulatory protein" FT /note="Similar to Agrobacterium tumefaciens, octopine FT catabolism/uptake operon regulatory protein OccR FT SWALL:OCCR_AGRTU (SWALL:Q00679) (298 aa) fasta scores: E(): FT 1.1e-22, 34.44% id in 299 aa, and to Agrobacterium FT tumefaciens nopaline catabolism/uptake operon regulatory FT protein NocR SWALL:NOCR_AGRT5 (SWALL:Q00678) (300 aa) fasta FT scores: E(): 6.1e-21, 30.61% id in 294 aa" FT /protein_id="CAE36117.1" FT /translation="MNLRQIEAFLAVVDLGTVTRAAETMYVTQSAVSRLISRLEREVGF FT TLFDRRQGLMAPTAEAKALHAEAMRSYIGLKEIQFAAQRIAQIGSGMLKVCVMSSLQQG FT ALPRLVTEFMRKHPGISVMFDVQRHYDVVYAVSRGSAEIGFATLPVDHPNIESLPIART FT PVVCLLPTGHPLAELEAIRSMDLHGVDFLSVPRMRFNDRITRILEAHGARPRTRIEAGT FT MLAAMALVEAGAGAFVVDAFTLGAVRDAQVVLRPFHPEVIVEVGALYSNSQPLSILASR FT FLEHCRAFQHEMETT" FT misc_feature 565425..565604 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 8.8e-21" FT misc_feature 565467..565559 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 565674..566291 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 6.1e-34" FT CDS 566306..568012 FT /transl_table=11 FT /locus_tag="BPP0534" FT /product="thiamine pyrophosphate enzyme" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme III large subunit IlvI SWALL:ILVI_ECOLI FT (SWALL:P00893) (574 aa) fasta scores: E(): 1e-34, 28.54% id FT in 557 aa, and to Archaeoglobus fulgidus acetolactate FT synthase, large subunit AF2100 SWALL:O28180 (EMBL:AE000958) FT (575 aa) fasta scores: E(): 2.7e-42, 31.5% id in 565 aa. FT Possible alternative translational start site" FT /protein_id="CAE36118.1" FT /translation="MNACLPAEAPLADPDPLDPDRKAVDEVARILKAEHTELLFCFPIN FT SLIDAATAAGIRPVVARTERAVVGMADGYARASLGERVGVCAVQYGPGCENAFGAMAQA FT YSDSSPVLMLPGGVNESCTDVRPNFETAKHYGNITKWVARVNRPDRVGEMMRRAYTGLR FT NGRRGPVALELPMDVMEQPVGRSASRHAPSQAIRTLCDPDTVRAACRLLLAAERPVLHA FT GAGVLQSGATPELVELAELLSIPTMTTLSGKSGFPERHPLALGSGGMAWPATVAHGLRT FT ADLLFGVGASLTKSVFAAPLPAGRRAMQLAVDDSDLNKDYPLDHALLGDARLVLRQMID FT MLKNEFGVQPDPARTARTGGELEAIRQAWLRQWHDKLTSASRPINPYRVVHDLQIAWAD FT RDVIITHDAGSPRDQLSPFYRCRRPGEYLGWGRSTHLGYSLPLALGAKMARPDALVAHL FT LGDAAFGECAMDLETAVRNRIGTVTVLMNNGCMGGYDKHMPLSSTTHRTRFLSGDYEMI FT ARGLGAWTERVEDPARLVEALREAARVADTGRPAVLEIMTAEEKALSQEAP" FT misc_feature 566360..566866 FT /note="HMMPfam hit to PF02776, Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 3.4e-15" FT misc_feature 566906..567343 FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain, score 3e-20" FT misc_feature 567443..567970 FT /note="HMMPfam hit to PF02775, Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 5.2e-18" FT CDS join(568117..569256,569258..569359) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0535" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA3592 SWALL:Q9HY34 (EMBL:AE004779) (395 aa) fasta FT scores: E(): 4e-73, 50.51% id in 388 aa, and to FT Thermoplasma volcanium L-carnitine dehydratase TVG1215416 FT SWALL:Q979H5 (EMBL:AP000995) (399 aa) fasta scores: E(): FT 2.9e-54, 38.87% id in 391 aa. Contains a frameshift after FT codon 380" FT /db_xref="PSEUDO:CAE36119.1" FT misc_feature 568372..568941 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 5.3e-46" FT CDS 569356..570126 FT /transl_table=11 FT /locus_tag="BPP0536" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydratase Crt SWALL:CRT_CLOAB FT (SWALL:P52046) (261 aa) fasta scores: E(): 2.9e-16, 28.57% FT id in 238 aa, and to Bacillus subtilis FT hydroxybutyryl-dehydratase FenO SWALL:Q9L7W1 FT (EMBL:AF218939) (260 aa) fasta scores: E(): 3.2e-17, 31.96% FT id in 244 aa" FT /protein_id="CAE36120.1" FT /translation="MNHISIRYEDSVAVVTYDRGEKKNAMSMQIIRDLTATAEALKDRH FT DITCVVLGGSRAAFSAGVDLTDPERFDLAGKSLSEQRQILTLGTRMCRAWEELPQITVA FT AIEGMNVGGGVALTLACDWRVMADDAYLFVPEAQIGINLSWNAIPRLVNMVGASMAKQI FT VLLGEKMPSAQARELGLVDWVVPGGSAEARAIEVAGRVSQCPAHVVRMSKQSINAHANA FT LNHLGTYMDVDQAMVCGASPEAARARGQFNKARA" FT misc_feature 569392..569913 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 3.3e-29" FT CDS 570175..571161 FT /transl_table=11 FT /locus_tag="BPP0537" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 3e-35, 35.73% id in 319 aa, and to Variovorax FT paradoxus and Burkholderia cepacia 2,4-diphenoxyacetic acid FT gene cluster hypothetical protein SWALL:Q9RHQ7 FT (EMBL:AB028643) (337 aa) fasta scores: E(): 1.4e-32, 33.43% FT id in 326 aa" FT /protein_id="CAE36121.1" FT /translation="MNTNLAKWLGRLVVAGVAFGSGAPAATAADQPSSWPRKSVTIVVP FT FSPGGSTDQIARLFSAKLAEKLGQPFVVVNRPGAGTIVGMQEVVRARPDGYTLLLAVST FT VSTQPALYPNLPYDIKRDLVPVSLLGKIPLLIYTNPAFPAHTLGELVEQARKPGADITY FT ASPGAASTAGLTGELFNEKVKTEIRHIPYNSGSPAMTDVMGGNVDLLWGTAAQGLEQYR FT AKRLNAVAISSERRSPSFPEVPTFREQGVDLVAEEWFGLMAPKGTPPEIVARVSQAASE FT IVKGNSFGDDYNYFEFIGSDPASFGAYMDAQAALWTGLVHRLGLQVK" FT misc_feature 570175..570258 FT /note="Signal peptide predicted for BPP0537 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.984 between residues 28 and 29" FT misc_feature 570337..571149 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3.1e-75" FT CDS 571119..571970 FT /transl_table=11 FT /locus_tag="BPP0538" FT /product="putative transcriptional regulator" FT /note="Similar to Salmonella typhimurium acetate operon FT repressor IclR SWALL:ICLR_SALTY (SWALL:P17430) (274 aa) FT fasta scores: E(): 5.4e-06, 26.77% id in 254 aa, and to FT Rhizobium meliloti putative transcription regulator protein FT SMC00263 SWALL:Q92PP5 (EMBL:AL591788) (282 aa) fasta FT scores: E(): 7.1e-18, 31.49% id in 254 aa" FT /protein_id="CAE36122.1" FT /translation="MDRAGPPAGVASEVKALKARDIDTSDEEQGKGPQALRRGLAIVEF FT LEGAATPAVSVTEIAQRTGLQRPTVHRLLDALEQFGWVARRDDGRRFLARERGADASFL FT DAGLDARAPRSLILQSIPAMRRLAQRFGDTVYLVWRDGGDSVSIHREFGSYPIQVVGSY FT PGNRYPLGVGSAGMAILAAMPAPAAESLVMRNADRIRAFDGLAPEVLLRLRACAVESGY FT AVMQNYVAKQALGVGCAMKRRQGVPVLVMSVSSVAERMSKARQREIATAIDAELVLLAQ FT ME" FT misc_feature 571416..571961 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 0.00022" FT CDS complement(571995..572957) FT /transl_table=11 FT /locus_tag="BPP0539" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) FT fasta scores: E(): 6.8e-46, 44.58% id in 323 aa, and to FT Rhizobium meliloti hypothetical protein SMA1927 FT SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): FT 4.8e-44, 42.33% id in 326 aa" FT /protein_id="CAE36123.1" FT /translation="MHRRSFLTATLLSLLATRAWAQKTAYPGQRPVRLVVPAAAGGATD FT LVARLIAQHLSPSWPEPIVVENRPGGGGVIGTQAVARAPADGYTLLMGAINHTINASLV FT KNLPYDTLGDFTFIAGVVSIPNVLVVNPKVPVNSVEEFIRYSQTHDLTFASSGNGTSQH FT LSAEKFRMDTGAKYQHVPYKGSAPAVTDLLGGHVDLMFDNLPSAAPNIRTGRLRALGVT FT SAQRNPAFPDIPAIAETAPGFDVRSWFGLMGPAGLPRDVVERLHAEMAHVFAQKDVLQW FT LDKMGAQAEVTDPAAFDAYVRQEIKRWAEVVQASGATVQ" FT misc_feature complement(572007..572819) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 7.2e-110" FT misc_feature complement(572895..572957) FT /note="Signal peptide predicted for BPP0539 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 21 and 22" FT CDS complement(join(573039..573245,573244..573390)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0540" FT /product="hypothetical protein (Pseudogene)" FT /note="Poor database matches. Similar to Methanosarcina FT acetivorans str. C2A. conserved hypothetical protein MA4043 FT SWALL:AAM07391 (EMBL:AE011116) (132 aa) fasta scores: E(): FT 0.049, 28.81% id in 118 aa, and to Methanopyrus kandleri FT AV19 predicted nucleic-acid-binding protein containing a FT Zn-ribbon MK1377 SWALL:AAM02590 (EMBL:AE010431) (134 aa) FT fasta scores: E(): 0.3, 27.27% id in 110 aa. Contains a FT frameshift after codon 48" FT /db_xref="PSEUDO:CAE36124.1" FT CDS complement(573387..574559) FT /transl_table=11 FT /locus_tag="BPP0541" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA1016 SWALL:Q9I4V7 (EMBL:AE004534) (383 aa) fasta FT scores: E(): 1.7e-40, 40.81% id in 370 aa, and to FT Methanosarcina acetivorans str. C2A. acetyl-CoA FT C-acyltransferase MA4042 SWALL:AAM07390 (EMBL:AE011116) FT (390 aa) fasta scores: E(): 3.3e-28, 33.24% id in 379 aa" FT /protein_id="CAE36125.1" FT /translation="MAFQHPAFVAGAFEHPTRHAPDKSTAQLHAECARGALADAGLSLE FT DVDGYFCAADAPGGIPALMADYLNLRKLRHVDGTESGGCSYIAHVGHAADAIARGKCSV FT ALITLAGKPRSSGQTTGTEIRQIPPERPAAAFEQPYAWTVAGMYGLLARRHMHEYGTTM FT EQLAWVKVAASHHAQHNPHALLRKRYTTEDVLGSPLVADPLRRMDCCVITDGGGALVLV FT APHIAASLARPRVGVRGYAETIRTNEAGRLDLLQTGAAVTGPRAFEMAGLAPADVKYAS FT VYDNFTIMVALQLEDLGFCAKGEGGRFVADGNLISGVGRLPWNTDGGGMCNNHPQNRGG FT ITKVIEAVRQLRGEAHPAVQVPSCDIALATGPGLVMGAGHAHATVLLERV" FT CDS complement(574603..576303) FT /transl_table=11 FT /locus_tag="BPP0542" FT /product="putative ligase" FT /note="C-terminal region is similar to Solanum tuberosum FT 4-coumarate--CoA ligase 2 4CL2 or 4CL-2 SWALL:4CL2_SOLTU FT (SWALL:P31685) (545 aa) fasta scores: E(): 1.2e-36, 29.63% FT id in 513 aa, and to Streptomyces coelicolor putative FT ligase SC5G9.20 SWALL:Q9RL07 (EMBL:AL117385) (518 aa) fasta FT scores: E(): 1.2e-60, 38.72% id in 501 aa" FT /protein_id="CAE36126.1" FT /translation="MSLSISDRHRSIIDRETFSYCRGRREEQRPGAGKHRARTASNRAP FT ETTMQLIDTFDRGAGYGLAEPCFIEPGGRTLSYGQIQDMSHRIANGLRAAGLDRDSKVG FT TLSANHLLTFPATLGIVRSGYMWLPVNARNAAEENANILARGGCEFLFIHSQFAAQLPG FT LLQALPGLKGVVCIDGALPQAPSLQDWMARQSAAPARSDARIDDVVAIRGTGGTTGLPK FT GVLVTHRNYLALLANWYAAMPVLERPVHLVVAPLSHAAGSATFAACAYGGCNVILPTAD FT PAAIIDAIGRYKVTQLFLPPTAIYKLLAHPEIRRGDYASLRYFLYSAAPMSVDKLREAL FT DIFGPVMVQAYGQAEAPFMCTVLSAGEHAGILRDPALRHRLASCGRASPFVRLGIMDPH FT GNLLPAGERGEIVVQGDLVAQGYYQDPAKTAETFKQGWLHTGDVGYQDGDGYLYIVDRM FT KDLIVSGGFNISPSEVEQVLWAHPAVGDCAVVGVPDDHWGEAIKAVVELKAGAQWDAEQ FT VLAYCRERLGSMKTPKTIEVWEQLPRSSVGKVLKRDIRERYWSGQARRV" FT misc_feature complement(574837..576075) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 7.1e-110" FT misc_feature complement(575638..575673) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 576328..577344 FT /transl_table=11 FT /locus_tag="BPP0543" FT /product="LacI family regulatory protein" FT /note="Similar to Bacillus subtilis degradation activator FT DegA SWALL:DEGA_BACSU (SWALL:P37947) (337 aa) fasta scores: FT E(): 1.8e-24, 29.08% id in 337 aa, and to Streptomyces FT coelicolor probable LacI-family transcriptional regulator FT SCC57A.16 SWALL:Q9RDI2 (EMBL:AL136519) (347 aa) fasta FT scores: E(): 1.9e-30, 32.73% id in 336 aa" FT /protein_id="CAE36127.1" FT /translation="MTKRVSVREVAHAAGVAISTVSRVLNGSGYASPDVRLRVQQAVAR FT LGYEPDYTARHLRTGHSRTIGCLLPSIANPFVAQLLSEVERLAQAAGYSLLVGSSEQRS FT RDKELVAFFENRRLEGIIALPAHEYDPIAASPFAATKLPTVIMDRDMGPGFDAVLIDHE FT PGMRQVMDYLLSLGHQRIALFAIGSQVRPGRLKLRSYRAALEAAGLPFDDRLVYLTDSS FT LESARQPMQRMLGLDAPPTAIVAVGTQLLSGAVHVVREAGMDIPRDMSVVAIGTMQTLE FT LMYPPVTALRYNFQDSARAVVQLILERIERTAPPQARTVVIPSDLILGSSCGPAPAR" FT misc_feature 576334..576417 FT /note="HMMPfam hit to PF00356, Bacterial regulatory FT proteins, lacI family, score 1.2e-07" FT misc_feature 576511..577317 FT /note="HMMPfam hit to PF00532, Periplasmic binding proteins FT and sugar binding domain of the LacI family, score 2e-07" FT CDS 577512..577850 FT /transl_table=11 FT /locus_tag="BPP0544" FT /product="putative membrane protein" FT /note="N-terminal region is similar to Yersinia pestis FT osmotically inducible lipoprotein B Osmb SWALL:Q8ZEE4 FT (EMBL:AJ414151) (71 aa) fasta scores: E(): 3.4e-06, 55.07% FT id in 69 aa. Full length CDS is similar to Agrobacterium FT tumefaciens AGR_PAT_235P SWALL:AAK90545 (EMBL:AE007888) FT (102 aa) fasta scores: E(): 0.051, 36.89% id in 103 aa" FT /protein_id="CAE36128.1" FT /translation="MTINKRLIQAILAGALALGLSTAALADKQGRNTVIGAGLGGVAGA FT LLSDGDPWVTLGGAAAGGVLGHVITDDDRRGRRHHWDRDRGRDYKRASYRGHDKYRGNK FT HRYKHRRH" FT misc_feature 577512..577589 FT /note="Signal peptide predicted for BPP0544 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 26 and 27" FT misc_feature 577665..577718 FT /note="2 probable transmembrane helices predicted for FT BPP0544 by TMHMM2.0 at aa 7-26 and 52-69" FT CDS complement(join(577893..577946,577948..578100)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0544A" FT /product="hypothetical protein (pseudogene)" FT /note="No significant database matches" FT /db_xref="PSEUDO:CAE36129.1" FT CDS complement(578107..579528) FT /transl_table=11 FT /locus_tag="BPP0545" FT /product="conserved hypothetical protein" FT /note="Poor database matches. Weakly similar to Salmonella FT typhimurium 2-methylcitrate dehydratase PrpD FT SWALL:PRPD_SALTY (SWALL:P74840) (483 aa) fasta scores: E(): FT 0.047, 24.4% id in 459 aa, and to Mycobacterium smegmatis FT hypothetical protein SWALL:Q938D1 (EMBL:AY054120) (477 aa) FT fasta scores: E(): 8.1e-14, 24.52% id in 469 aa" FT /protein_id="CAE36130.1" FT /translation="MAAVACDTLIGRLADFAAAVRYDALPAQVVAECKRILLDSLGCAY FT AALGADKGRLAMQAGRDMGGPAEASVFGGQERLSAASAAFVNGELINALDFDACTIPPG FT HVAPYALPPLLAAGEAARAGGKRIIEAIAVAHEVCARVGSAMSHYRDLTPGQRLGFPPV FT TGYSSTIIGSTLACALARGMPRDLTAHAVGLAARMAPAQSMTKWIQTLPATDDKYLMAG FT WMAQAALQAVLLASNGYRGDVAALEGEYGFWRYMGVRKWNPRALTDGLGTDWRFPDLTI FT YKPYPTCRISHTVLDCLGAILADHALKPHEIENVAAYCDPHAATLPMFVNTFIASAGDA FT AMNVAYAVSMIVHGVRSGPAWHDDATLNNDRLLAFMRKVTVLPHPRFEEMLAAEPQSRI FT GRVEIRARGRTFESELHYRKGSPATPRTRMADTELLEKFTHCASRAKAGSAERIAAMIF FT RLEQLDDIGELARIW" FT CDS complement(579528..580610) FT /transl_table=11 FT /locus_tag="BPP0546" FT /product="putative Zinc-binding dehydrogenase" FT /note="Similar to Bacillus subtilis sorbitol dehydrogenase FT GutB SWALL:DHSO_BACSU (SWALL:Q06004) (352 aa) fasta scores: FT E(): 5.1e-15, 32.17% id in 345 aa, and to Mycobacterium FT tuberculosis alcohol dehydrogenase Adh MTV045.04 FT SWALL:O53904 (EMBL:AL022000) (367 aa) fasta scores: E(): FT 1.2e-41, 39.61% id in 361 aa" FT /protein_id="CAE36131.1" FT /translation="MKTHAIVQRGPRRLEYVQLPLPEVLAPDEALVRVEGCGICGTDYE FT RYEGSLGHVPELIPGHEPVGRIERIGDSAAQRMQLKEGDRVAVQPHYGCGVCSYCVEGM FT FQLCARKINLGLSPLSEGCGLWGGFAEHMMLKGNAIVHKMPDSLPIEDAVMFNPLGAGF FT EWAITSAGTRVGDDVLIFGPGQRGLACVIAAVIAGANRIVVTGLQKDAYKLELARSLGA FT TEVVAIDPADPASLARALEGQKFDRVIDVTPVATQPILDAIALVRPGGTIVLAGLKGNT FT RTVALRPDDLVMDGIEIKGVRGISTRSYGLAVRAICSGAYDFSAWHTHTMALKDAELAI FT RILAGEVRQGPEPLHITIVP" FT misc_feature complement(579534..580589) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenase, FT score 4.3e-49" FT misc_feature complement(580389..580433) FT /note="PS00059 Zinc-containing alcohol dehydrogenases FT signature." FT CDS 580842..581744 FT /transl_table=11 FT /locus_tag="BPP0547" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium smegmatis putative FT carboxy-phosphonoenolpyruvate mutase SWALL:Q938D0 FT (EMBL:AY054120) (296 aa) fasta scores: E(): 2.7e-16, 32.76% FT id in 293 aa. N-terminus is similar to the N-terminal FT region of Streptomyces hygroscopicus FT carboxyvinyl-carboxyphosphonate phosphorylmutase BcpA FT SWALL:CPPM_STRHY (SWALL:P11435) (294 aa) fasta scores: E(): FT 2.6e-13, 32.15% id in 227 aa" FT /protein_id="CAE36132.1" FT /translation="MTKARHAFRRQLEAGSGSILAAGVGDAGQARLVERVGYPAVYISG FT SYVNHTRGYPDGTLTLSEIAQRISEVADRVNIPVIADADEGFGSVLKIARTVHEFERAG FT AAALHLEDFAIKKHGLPLPVQDMVTHLKVALDTRTDPDMLIIARTDAMSPWRDGIHAWR FT AACEEEAFERALRYCDAGADAIMPLFATNSWLERYGPRIPKPLVVLGGAPKNWGAEAAG FT VAEPEKTASELLAWNVRMVIYATNMLSRAHRFMTQEYGRWLQDGKFDVRPEDEADRADA FT NVLVGLPEKERILQKYPVG" FT CDS 581769..582134 FT /transl_table=11 FT /locus_tag="BPP0548" FT /product="putative carboxymuconolactone decarboxylase" FT /note="C-terminus is similar to the C-terminal region of FT Yersinia pestis putative decarboxylase YPO1999 SWALL:Q8ZEZ7 FT (EMBL:AJ414151) (140 aa) fasta scores: E(): 2.3e-18, 56.84% FT id in 95 aa, and Ralstonia solanacearum probable FT 4-carboxymuconolactone decarboxylase protein RSP1472 FT SWALL:Q8XQ14 (EMBL:AL646085) (108 aa) fasta scores: E(): FT 4.9e-17, 50.96% id in 104 aa" FT /protein_id="CAE36133.1" FT /translation="MTDTRNSDPGRDARGLEAARQLYRQRLDEIAPALAQMTDDVLFGG FT LWERPQLSKRDRSLITCTALVALGATEQMATHFPRALENGVTREELVEMITHMAYYSGW FT PSAVSAAMRAWEILARE" FT misc_feature 581826..582128 FT /note="HMMPfam hit to PF02627, Carboxymuconolactone FT decarboxylase, score 8.2e-12" FT CDS complement(582182..582952) FT /transl_table=11 FT /locus_tag="BPP0549" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /note="Similar to Escherichia coli probable enoyl-CoA FT hydratase PaaF SWALL:PAAF_ECOLI (SWALL:P76082) (255 aa) FT fasta scores: E(): 2.8e-19, 35.27% id in 241 aa, and to FT Caulobacter crescentus enoyl-CoA hydratase/isomerase family FT protein cc0006 SWALL:Q9AC55 (EMBL:AE005675) (262 aa) fasta FT scores: E(): 1.5e-23, 36.61% id in 254 aa" FT /protein_id="CAE36134.1" FT /translation="MDDTLLIDDPAPGVRVITLNRPQRLNALDGPTLARLNAAVRDSTA FT PERSLRVLVIRGAGRAFCSGVDLKWAASGVLDDRAAHQRNQDLMQETYEAFEAAPQIVI FT ASVNGFAVAGGLELALACDIIVASDEAQLGDEHIRRNLFPSGGSTQRLPRKIGLARAMY FT YLVTGRRMSGREAERIGLASLAVPPLELDAVSLGLAEEIARADALALASMKLMARRSLE FT LPLKDGLAMERWMQFRYRTASPSLDAGVRKFAEG" FT misc_feature complement(582392..582910) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 3.5e-39" FT misc_feature complement(582581..582643) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(582999..584186) FT /transl_table=11 FT /locus_tag="BPP0550" FT /product="iron-containing alcohol dehydrogenase" FT /note="Similar to Bacillus subtilis alcohol dehydrogenase FT GbsB SWALL:GBSB_BACSU (SWALL:P71017) (402 aa) fasta scores: FT E(): 8.9e-18, 27.57% id in 388 aa, and to Brucella FT melitensis alcohol dehydrogenase BMEII0553 SWALL:Q8YCH6 FT (EMBL:AE009691) (389 aa) fasta scores: E(): 1.4e-19, 26.91% FT id in 379 aa" FT /protein_id="CAE36135.1" FT /translation="MIHTGKIDSPRIGSVLFGPGALQRLGQCVPQLHARRVLLVTTTSL FT ARQPDVLDEVRGALGGASVAIYGGARQHVPWEQVVEGARAARQHEADLLVSLGGSSATD FT VTKGINLALAEAGAEGCAPFLARHAALGADAAKRRFSRPKLMHVAIPTTLSGAEFSSSV FT GMTDARTRRKFAMVDAALTPGLIVLDPAATRQTSAALWTSTALKVLADCFEEICSPRHV FT PMVDALALQSVRIIDRYLLASAAAPMDQQARAMLQHATWMCESVKACTGLGIVTALRHQ FT IGGMFDVPHGMASSVVFPAGVRFNRPGVDERLALIADAMGLQARDTAAAAGAALQRAQE FT LIAAASLPTRLRDVGVPRDGLDRLAEAVMLDRQTLNNPRPVESVAQVRELLGQIW" FT misc_feature complement(583026..584147) FT /note="HMMPfam hit to PF00465, Iron-containing alcohol FT dehydrogenase, score 1.6e-25" FT CDS complement(584236..585504) FT /transl_table=11 FT /locus_tag="BPP0551" FT /product="CaiB/BaiF family protein" FT /note="C-terminal region is similar to Agrobacterium FT tumefaciens L-carnitine dehydratase CaiB SWALL:AAL43117 FT (EMBL:AE009163) (397 aa) fasta scores: E(): 4.7e-49, 39.48% FT id in 385 aa, and to the C-terminal region of Brucella FT melitensis formyl-coenzyme A transferase BMEII0224 FT SWALL:Q8YDF2 (EMBL:AE009661) (454 aa) fasta scores: E(): FT 1.1e-54, 44.41% id in 376 aa" FT /protein_id="CAE36136.1" FT /translation="MFQPPPHRAMPHTPFPCHTRADDMTSPSTPQRPRFPLRELDGRQP FT AILDGIKVLDLTRLLAGPVATQMLGDLGAEVVKVEHPKDGDDTRVWSPKLEGHSGTFLS FT ANRNKASITLDLKSADDLETMKTLIRRADVLVENFSAGVMARLGLAYDACVELNPALIY FT CSISGYGQAGIFRGRGGYDAVFQAESGHMSVTGSPEGEPMRMGAPVTDFTSGVVASNAI FT LAALFHRQRTGEGQFIEIAMQDVAFNMPINFGMNYLASEIVPHREGNSSPLAAPTGVFQ FT AGDGDLLLSCANDRLWQKFALLVEREDLLADERFQDNGARVRHRAALAQALAPVMAGRT FT VDQWLALLIPAGIPAAAVRNLDGAYAQPYVQERQLVTEILDSKGRSVPTVANPIRFAKT FT PVVIRRAPPELGEDNAAIGRLFT" FT misc_feature complement(584605..585171) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.4e-71" FT CDS 585717..586928 FT /transl_table=11 FT /locus_tag="BPP0552" FT /product="putative racemase" FT /note="Similar to Mus musculus alpha-methylacyl-CoA FT racemase AMACR or MACR1 SWALL:AMAC_MOUSE (SWALL:O09174) FT (380 aa) fasta scores: E(): 2.7e-61, 47.38% id in 382 aa, FT and to Streptomyces coelicolor putative racemase SC5f2A.13 FT SWALL:Q9X7N6 (EMBL:AL049587) (398 aa) fasta scores: E(): FT 6.1e-75, 53.88% id in 386 aa" FT /protein_id="CAE36137.1" FT /translation="MGVPEMNTDATRPGSPAEPAVGSLHGLRVIEVAAMGPVPFCGMLL FT ADLGAEVLRVDRTADAGLGIALDPRFELRGRGKQSVAMDLKHPDGLAAFLRLVARADVL FT LEGFRPGVAERLGIGPRACLSLRPSLVYGRATGWGQSGPMSQAAGHDINYLALTGALDM FT IGPAGGAPVPPLNLVGDYAGGALYLALGVVSAGLEAARSGVGQVVDAAMIDGVSSLLTV FT FHGFRQAGMLNPERGANVLDGGAPYYTTYATLDGRHMAVGAIEPKFFAVLLSELGLDQR FT ELPAQQDRARWPQLRQAIAARFAQHTRDDWAAHFQDKDACVSPVLALHEAPQHAHNQAR FT AQMVDVDGIEHPAPAPRFSRTPASIRGNAAAPGAHTVQALESWGFDAAEIERGLSAGFF FT RSDP" FT misc_feature 585957..586532 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.6e-73" FT CDS 587134..588099 FT /transl_table=11 FT /locus_tag="BPP0553" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 2.4e-31, 34.3% id in 309 aa, and to Comamonas FT testosteroni hypothetical protein OrfJ SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 1.7e-28, 35.58% FT id in 326 aa" FT /protein_id="CAE36138.1" FT /translation="MLRFFRYAAVMLALGCHIPAHAQNYPSRPVRFIVPYTTGGTLDLQ FT ARVIAEAIAKIWQVPVVVENKPGANGVIGTAEVARAAPDGYTVGLVSGQHSTLPSLSAH FT LPFAMTDLKAVAILTKVPMALLARPNLPAGNVAELVAYAKANAGNVTAGTAGPATMNNI FT WLKSFEQETGTRFLAVPFRGSGPAHIDIMADRVDVMFDAAGAVLRNIQAGRLKVLAVGG FT TGRSQLLPDVPTLEEQGFPMGKYMFSPSAAVVPAGTPPEVVQKLGQDLLAVLAQPAIRQ FT RLIEAGLEVVGMGPDQADGFIASEIDRLSKIVRANNIVAE" FT misc_feature 587134..587199 FT /note="Signal peptide predicted for BPP0553 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT misc_feature 587266..588087 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 7.5e-75" FT CDS complement(588153..589040) FT /transl_table=11 FT /locus_tag="BPP0554" FT /product="LysR family regulatory protein" FT /note="Similar to Escherichia coli cyn operon FT transcriptional activator CynR SWALL:CYNR_ECOLI FT (SWALL:P27111) (311 aa) fasta scores: E(): 5e-16, 26.95% id FT in 282 aa, and to Rhizobium meliloti putative FT transcriptional regulator protein SMB20123 SWALL:Q92X39 FT (EMBL:AL603642) (298 aa) fasta scores: E(): 3.3e-19, 30.71% FT id in 293 aa" FT /protein_id="CAE36139.1" FT /translation="MAHNIKYRQLKAFKIVAETGSFKVAANRLAITQPSMSIMIKELEE FT DVGVPLINRTTRSTELTDAGRDFYEQVKGSLDQLEKAYAYAKAAGKAEHGRIRIATLPT FT LAGSLLSTVIAEYRKQYPKVAIELVERTYLGFIRALRQQEVDFGIGILRSEEPDFEFTQ FT LCTDRLVVVAPKGHPITQKRIGVKTISQYDIVMISVGPQAEALRQLGLEASAKVLVEQP FT STAIEIVRKGASLTVTSSSALVGIDKRGLASVPVPGALSYRNIGLLVGKDKKLNPAATK FT FIEYVQAHIQAGPP" FT misc_feature complement(588168..588773) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.4e-38" FT misc_feature complement(588843..589022) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.2e-21" FT misc_feature complement(588888..588980) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS complement(589149..589859) FT /transl_table=11 FT /locus_tag="BPP0555" FT /product="conserved hypothetical protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein AGR_L_563 SWALL:AAL45388 (EMBL:AE009387) (228 aa) FT fasta scores: E(): 1.9e-13, 35.89% id in 195 aa" FT /protein_id="CAE36140.1" FT /translation="MSLHEPNSLPLAPRIPSTAVLAIWNDIDPEIASEYELWYQYDHIR FT DRAGTPGFRSARRYQRVAGAGREYFTFSDLESIEASRSPAYLERLRNPTEWTRRMMPHF FT RRLIRTASHVSIDCGEGTGGIAGTAVFDTVAGDRLAAIRTLIQAEAERAVRQAGVTRLR FT LFEGDAQATGVPNPEAALRPDPPRTAGLALVLEGTSGKAVADQLRNLCAMPLLAALPEV FT MPASIYQLIYSSQS" FT CDS complement(589912..590892) FT /transl_table=11 FT /locus_tag="BPP0556" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 5.4e-41, 40.55% id in 323 aa, and to Agrobacterium FT tumefaciens hypothetical protein AGR_L_312 SWALL:AAL45521 FT (EMBL:AE009401) (329 aa) fasta scores: E(): 4.9e-37, 38.43% FT id in 320 aa" FT /protein_id="CAE36141.1" FT /translation="MNPTRRAMLACAGALAVAGAAPRTWARDAFPSRPMRIIVPVSPGG FT SNDLAARLLAPSLSQALGQPVVVENKAGAGGAIGSTLVARADPDGYTALLYSNSILTLP FT ALMKNPGFQVQRDLIPVSMLVKSGAVLVVGNSVPANTFPELLKYIRENGSAINYGSGGI FT GGSTHLMGEMFNKMAGTNMTHVPFKSAGEYNQAIIANQVQLAFDVLSSAKPLADSGRLK FT ILAVTSKERDPALPQVPTLDEGGLPGYEYLVWQGLFLPAHTPRDIVMKWAAACKQAVDT FT PEVRQKFASSGVETVGSTPEEFARVVQRDAPLLTKLVEAAGIAPQ" FT misc_feature complement(589924..590745) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.6e-91" FT misc_feature complement(590815..590892) FT /note="Signal peptide predicted for BPP0556 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.430 between residues 26 and 27" FT CDS 591219..592385 FT /transl_table=11 FT /locus_tag="BPP0557" FT /product="acyl-CoA dehydrogenase" FT /EC_number="1.3.99.-" FT /note="Similar to Homo sapiens mitochondrial, short-chain FT specific, acyl-CoA dehydrogenase ACADS SWALL:ACDS_HUMAN FT (SWALL:P16219) (412 aa) fasta scores: E(): 2.5e-39, 34.03% FT id in 382 aa, and to Bacillus halodurans acyl-CoA FT dehydrogenase BH3798 SWALL:Q9K6D1 (EMBL:AP001520) (380 aa) FT fasta scores: E(): 4.3e-42, 34.1% id in 387 aa. CDS is FT shorter at the N-terminus in comparison to the human FT protein" FT /protein_id="CAE36142.1" FT /translation="MDFTYTDEQQAVRDMVRAFARNEIAPIADECDRSESFSYDTWRRL FT AELGVINMNFPQDCGGSEAGMLAMCLAVEEVCYHDSSYGPVFTAQQTCCRHILRYANEP FT QRSQWIEEYVLPISRGVAFGATALTEPNSSSSDAASMSTFARRDGDEWVINGNKMYSTA FT AGLEGAKFVIVWAIVDKQTRKSGLFLVPYGTPGFTVGSKLHKMGMRAADTRELFFTDCR FT IPAAHILNGGAAGQASPFKSDTQYHSKLFLASNAIGLQRYCLDQAIDFAKQRKTWGVPL FT SERQRIQGWIAEMVADIQISTLLRDRAAVLYEAGTLSAADSAILKYVSAENAVKASHYA FT SEIFGGMGYMDGVGVSRRYRDAKGLTIIQGGSTLFKWIIAQETLREAG" FT misc_feature 591231..591566 FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal domain, score 8.9e-18" FT misc_feature 591597..591905 FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 3.5e-31" FT misc_feature 591909..592370 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 2.8e-28" FT CDS 592504..593484 FT /transl_table=11 FT /locus_tag="BPP0558" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni hypothetical FT protein OrfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta FT scores: E(): 2.9e-36, 38.78% id in 330 aa, and to FT Pseudomonas chlororaphis hypothetical protein SWALL:Q9L3W5 FT (EMBL:AJ271325) (336 aa) fasta scores: E(): 3.5e-33, 37.5% FT id in 320 aa" FT /protein_id="CAE36143.1" FT /translation="MIDRRTFLSTLAALAASGIARGADGPASGYPDKPVHLIVMNAPGT FT ATDNLARFVASHMARQWGSPVVVENKLGGGGTIGTNYVAKAPADGATVLFTNAAHYIFP FT SLYRNLPYDAAADFTPVAKVGHTPSLLLLPADSPYATVRDVIAAAKAHPGKLSFSSSGT FT GASPHLAGALFNSMAGVDIQYVPYKSAAQAILDVASKQVDMGFNGVTGPLPLIRDGRIR FT ALAVTSPKRSRLLPDVPTIAEAALPGYAIETAVFALVRAGTPEPVVRKLADAMTAAARS FT AEFNELCAANGIDIDIVGPAGMKAAMPGEFAKYQKLVALAGIKAE" FT misc_feature 592504..592569 FT /note="Signal peptide predicted for BPP0558 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT misc_feature 592651..593472 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3.1e-89" FT misc_feature 593377..593418 FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT CDS complement(593579..594115) FT /transl_table=11 FT /locus_tag="BPP0559" FT /product="conserved hypothetical protein" FT /note="Similar to Archaeoglobus fulgidus putative FT 3-isopropylmalate dehydratase small subunit AF1761 FT SWALL:LE24_ARCFU (SWALL:O28513) (165 aa) fasta scores: E(): FT 4.8e-17, 34.96% id in 163 aa, and to Pyrococcus furiosus FT DSM 3638 putative 3-isopropylmalate dehydratase small FT subunit PF0939 SWALL:AAL81063 (EMBL:AE010207) (164 aa) FT fasta scores: E(): 1.8e-16, 32.72% id in 165 aa" FT /protein_id="CAE36144.1" FT /translation="MILSGRVWKFGDQLHSSHFLSGRHDALGRAGKFEQLSRHILEDAN FT PAFVDQVRPGDLLVVGAAFGTGKHLDGLIHAFRTLGIAAILGKGFSAAWERDSINLGLP FT ALVYPELYEHVQTGEELQLDLRGTLARNLTRGTTIAVHATDAGLLALLEAGGIAAYTAR FT RLGIVDRPKAGAHTA" FT CDS complement(594112..595422) FT /transl_table=11 FT /locus_tag="BPP0560" FT /product="aconitase family protein" FT /note="Similar to and internal region of Emericella FT nidulans mitochondrial homoaconitase LysF SWALL:LYS4_EMENI FT (SWALL:Q92412) (775 aa) fasta scores: E(): 3.1e-18, 30.71% FT id in 459 aa, and to the full length Methanosarcina FT acetivorans str. C2A. 3-isopropylmalate dehydratase, large FT subunit LeuC SWALL:AAM06458 (EMBL:AE011011) (424 aa) fasta FT scores: E(): 8.2e-51, 38.62% id in 422 aa" FT /protein_id="CAE36145.1" FT /translation="MAGMGKTMTEKILSAAAGRNVSRGDFGWAKVHVVSMIDALHFCDW FT DFFDRNQVKVWDPSRVVFSFDHLAYPGFGLGVQGLGRIRDWARRHGVPNENIFDIGRNG FT ISHQVPAEHGWVLPGTVYIGADTQAATLGAFNCFAIPALAETPFIMATGDTWFKVPPCV FT RIRLSGRLPKGVLGKDIYLRLLQDLRGKLEGCAIEFDGPGVATMPLDVRMAVANGASHI FT GATTMIFPSDDILLDYLRPRAREAFAPVAADGDAAYDQAYEYDLASFEPLIAGPDDPGR FT ISPLRAMAATRIHAAYIGSCSSGRLEDLTQAAEVLRGRKISPDVRMVVTPISTEVMLQA FT VEAGLVAAFVEAGATVTAPGCGACFYGNASPLHLEDGENCITGSVENWPGRMGSNKASI FT YLANAAVVAASALAGHIADPDMVRPSNAGAASAREQP" FT misc_feature complement(594181..595404) FT /note="HMMPfam hit to PF00330, Aconitase family (aconitate FT hydratase), score 5.8e-14" FT CDS 595609..596475 FT /transl_table=11 FT /locus_tag="BPP0561" FT /product="LysR family regulatory protein" FT /note="Similar to Escherichia coli cyn operon FT transcriptional activator CynR SWALL:CYNR_ECOLI FT (SWALL:P27111) (311 aa) fasta scores: E(): 3.3e-12, 27.3% FT id in 293 aa, and to Rhizobium meliloti putative FT transcriptional regulator protein SMB20123 SWALL:Q92X39 FT (EMBL:AL603642) (298 aa) fasta scores: E(): 2.9e-14, 33.09% FT id in 284 aa" FT /protein_id="CAE36146.1" FT /translation="MSHNIKYRQLKAFRILAESGSFKHAADSLAVTQPSMSIMIRELES FT DLGVALIDRATRSAELTDAGRDFYQQIKGSLDQLEKAYSYANAAGKAEHGRVRIATLTS FT LAAEAVTTAIARMHAERPGIQIELMERTYFLALRRREVDLGVGILHEAHADLDFQYLFS FT DQLVVVTPKGHPLARQRQPLKHLGKYDVVVVSPGPSLEALQELDADCAPPVQVEQPSTA FT ITMVRKGLGVTVTSSSATTGLDMRGLAAVPIPGTTRDVGVITLAQARLSPVASAFLRCL FT RHVHPAG" FT misc_feature 595627..595806 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.7e-20" FT misc_feature 595669..595761 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 595876..596466 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 5.1e-34" FT CDS complement(596509..597924) FT /transl_table=11 FT /locus_tag="BPP0562" FT /product="putative exported protein" FT /note="Weakly similar to the C-terminal region of FT Shewanella frigidimarina fumarate reductase flavoprotein FT subunit precursor FccA or Fcc3 SWALL:FRDA_SHEFR FT (SWALL:Q02469) (596 aa) fasta scores: E(): 1.2e-06, 24.68% FT id in 474 aa, and to the full length Salmonella typhi FT hypothetical protein R0146 SWALL:Q9L5J6 (EMBL:AF250878) FT (467 aa) fasta scores: E(): 8.4e-12, 28.42% id in 489 aa. FT Possible alternative translational start site" FT /protein_id="CAE36147.1" FT /translation="MTRTDAGRREPMRIAVMGGGIAGMVFAARAAELGGKVVVLEQGDD FT ELYRCNTRYTGGAFHLCFHDIDKPAETLATAIKAATADFATDALTEAIAADARHAVRWL FT QGKGIRLMKAGPDAWRQHFLAPPSLMQPGLHWQGRGGDMLLRTLRQRLEADGGRLLRGA FT RVTRLLMAQGRCAGVEYERHGARHAIEADLVMLADGGFQANMDMLRQYVGPAPEKLKQR FT GAGVSQGDAIRLAQEAGAALVGMENIYGHLLCQDALHDDRLWPYPIMDMLAGAGIVVGQ FT DGRRVMDEGLGGVYMTNALARLPDPQGTILVFDRAIWDGPATEFILPANPYLPLSGGTV FT QSADTLPELAARTGVDADGLSQTVLAYNAALARGATAALAPPRSAGAARPIAHPPYHAV FT RLVPGITFTMGGIAIDGNGQVLQAGGAPVPGLYAAGCCTGGFEGGARSGYVGGLTKSAT FT ISWRAAAHALARS" FT misc_feature complement(597835..597924) FT /note="Signal peptide predicted for BPP0562 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.956) with cleavage site FT probability 0.891 between residues 30 and 31" FT CDS complement(597921..598163) FT /transl_table=11 FT /locus_tag="BPP0563" FT /product="putative membrane protein" FT /note="Poor database matches. Similar to the N-terminal FT region of Caulobacter crescentus hypothetical protein FT CC1616 SWALL:Q9A7V3 (EMBL:AE005836) (347 aa) fasta scores: FT E(): 9.2, 36.84% id in 57 aa" FT /protein_id="CAE36148.1" FT /translation="MQALPLNIPRYPMLRFVARHGRNLVLAIAIVLLAAGVAMLAQMPS FT AIPGAIAIGAAVVVFVVGRALVEMVELITDMLLPK" FT misc_feature complement(join(597963..598028,598044..598100)) FT /note="2 probable transmembrane helices predicted for FT BPP0563 by TMHMM2.0 at aa 21-40 and 45-67" FT CDS complement(598164..598988) FT /transl_table=11 FT /locus_tag="BPP0564" FT /product="putative hydrolase" FT /note="Similar to Frateuria sp. ANA-18. beta-ketoadipate FT enol-lactone hydrolase CatD SWALL:Q9Z9Y3 (EMBL:AB009343) FT (265 aa) fasta scores: E(): 2.7e-13, 30.07% id in 256 aa, FT and to Rhodococcus opacus 3-oxoadipate enol-lactone FT hydrolase/4-carboxymuconolactone decarboxylase PcaL FT SWALL:O67982 (EMBL:AF003947) (400 aa) fasta scores: E(): FT 1.6e-16, 33.19% id in 241 aa" FT /protein_id="CAE36149.1" FT /translation="MPYVQLDGPGRATPLCLHYRRFPGPAHATPLVLLHELGGTLESWE FT PFAQRLCRRYDVYAFDQRCAGRSEHTGQPFTLWDLARDTIDFVDAMKIEGRFALMGLAM FT GAVTAAHVAARHADRLHGLVLCDGTPAIDRNSSDYLLGRAAKVRTDGMRVVAEPSYRNA FT FKGLLGQAENDGWDQYLERFICNAPVSYAMHSEALAAFSLDDSDFSRIAAPTLVLTGEH FT DFIWPPATGAALAARISGARFEAVAGAAHFPPLQRPDAVAARVASFLDRDVS" FT misc_feature complement(598182..598826) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 7.4e-21" FT CDS complement(598991..599725) FT /transl_table=11 FT /locus_tag="BPP0565" FT /product="putative branched-chain amino acid transport FT ATP-binding protein" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi high-affinity branched-chain amino acid transport FT ATP-binding protein LivF or LivG SWALL:LIVF_SALTY FT (SWALL:P30294) (237 aa) fasta scores: E(): 1.5e-32, 47.43% FT id in 234 aa, and to Pyrobaculum aerophilum branched-chain FT amino acid transport ATP-binding protein PAE1388 FT SWALL:Q8ZX96 (EMBL:AE009819) (234 aa) fasta scores: E(): FT 2.5e-36, 51.93% id in 233 aa" FT /protein_id="CAE36150.1" FT /translation="MPSLLEVSGLRAGYGLFSVLHGLDFHVAEREIVSLVGSNGAGKTT FT TMRAVSGLIAPSGGTIRFDGKDTTGLSPSQMVARGLVCVPERRQLFPQMTVLDTLLVGV FT STPRARQRRDENLERVYQLFPKLKERRGQLCGTLSGGEQQMVAIGRGLMSAPRMLLLDE FT PSLGLAPTIVKQLFQAIAGIREQGVTVLIVEQNVRSVLSFVDRAYVIENGSVELSGSAA FT ELSNNPNVVNAYFGIGSKESVH" FT misc_feature complement(599087..599638) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 4e-49" FT misc_feature complement(599270..599314) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(599594..599617) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(599718..600431) FT /transl_table=11 FT /locus_tag="BPP0566" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Aeropyrum pernix 242aa long hypothetical FT high-affinity branched-chain amino acid transport FT ATP-binding protein APE2524 SWALL:Q9Y8W0 (EMBL:AP000064) FT (242 aa) fasta scores: E(): 2e-30, 46.78% id in 233 aa, and FT to Pyrobaculum aerophilum branched-chain amino acid FT transport ATP-binding protein PAE1389 SWALL:Q8ZX95 FT (EMBL:AE009819) (245 aa) fasta scores: E(): 9.8e-26, 42.37% FT id in 236 aa" FT /protein_id="CAE36151.1" FT /translation="MLNVENVSVRFGGLVAVDSISFDTDTNRILCIIGPNGAGKTTLFS FT VLSGFLRPTLGQVRFNGLDVSSMRPDQVALAGIARTFQIVRPFRDMTVLDNVMVGAYAR FT CSRYEEARERALHIIDEVGLHRKRDFLASYLTLPGLKRLEVAKALATQPSYLLLDEVMA FT GLNLPEQHEVAAMIEKIHQRGVGVLLVEHSLAIVQRLGQHVLCMDSGRKIAEGTARDVI FT QSEAVQVAYMGVSNA" FT misc_feature complement(599802..600353) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.2e-32" FT misc_feature complement(600309..600332) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(600433..601470) FT /transl_table=11 FT /locus_tag="BPP0567" FT /product="putative branched-chain amino acid transport FT system permease" FT /note="Similar to Aeropyrum pernix hypothetical FT high-affinity branched-chain amino acid transport permease FT protein APE2523 SWALL:Q9Y8W1 (EMBL:AP000064) (332 aa) fasta FT scores: E(): 1.1e-22, 32.17% id in 317 aa, and to FT Streptomyces coelicolor putative branched amino acid FT transport system permease SC8A11.12 SWALL:Q9FBZ8 FT (EMBL:AL391041) (349 aa) fasta scores: E(): 2.6e-19, 30.48% FT id in 328 aa" FT /protein_id="CAE36152.1" FT /translation="MFSKLTDSFRQQGTTLWCIAALVVVAAAVAAPWMNPYYTRVMTMG FT LMCGYLAASWNLIGGYAGQMSLGHALFFAIGSYSVALLARMPDVPLVAAFPLAILVSVG FT LAWIIATICFRYALRGIYFAVGTLLLAEIARILVINSDVLGRSQGLQIPGMQGALNFSF FT GSDLPFFYIFLGISIALALGSLALERCKLGYDLVALREQEEGAQALGVDVAAIKRLAFV FT LSAALTCVGGVIYAGLVRYVEPGYDLSLSITLFMVMGAVLGGRGTALGPFLGGVVMVIV FT QETLITVGSAFGTTSVSALAQMIYGLFFVVILLVFPRGIVGQLLHRRVDRKATRLPASA FT TPEAS" FT misc_feature complement(600496..601371) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 1.4e-10" FT misc_feature complement(join(600496..600561,600592..600657, FT 600679..600735,600748..600813,600910..600966, FT 601054..601110,601132..601197,601213..601269, FT 601291..601356,601369..601431)) FT /note="10 probable transmembrane helices predicted for FT BPP0567 by TMHMM2.0 at aa 13-34, 38-60, 67-86, 91-113, FT 120-139, 168-187, 219-241, 245-264, 271-293 and 303-325" FT CDS complement(601487..602362) FT /transl_table=11 FT /locus_tag="BPP0568" FT /product="putative branched-chain amino acid transport FT system permease protein" FT /note="Similar to Brucella melitensis high-affinity FT branched-chain amino acid transport system permease protein FT BMEII0102 SWALL:Q8YDS3 (EMBL:AE009648) (287 aa) fasta FT scores: E(): 1.4e-21, 29.22% id in 284 aa, and to Aeropyrum FT pernix hypothetical high-affinity branched-chain amino acid FT transport permease protein APE2522 SWALL:Q9Y8W2 FT (EMBL:AP000064) (265 aa) fasta scores: E(): 8.8e-23, 33.59% FT id in 259 aa" FT /protein_id="CAE36153.1" FT /translation="MMFLTLLLVGIVSGVLGGLILALLSTGFNLALGVSRVVNFQHGAV FT VLWSMYAAYVLWEATGINPYLGLLLIVPVAFAIGYFLHRWLIIRSLQTPEDSQILFSIG FT LLIAFQYLAQFVYSTDARSLTEESLQHSLIIGPVILQYTRLAAAAVSLLVLVLLHLMLT FT RTDLGRKLHACAQNPVGARVAGLNVEHLSAVALGIAAACAAVSGTALATMAPIFPERAF FT EYSLAAVVVSVLGGMGSMSGSILGGLIVGVIIAVSQVTGHGDLALAIVYALVFLIFLVH FT PTGLISAVKR" FT misc_feature complement(601493..602344) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 2e-28" FT misc_feature complement(join(601496..601561,601598..601663, FT 601724..601789,601883..601948,602009..602065, FT 602102..602167,602180..602230,602267..602332)) FT /note="8 probable transmembrane helices predicted for FT BPP0568 by TMHMM2.0 at aa 10-32, 44-61, 65-87, 99-118, FT 138-160, 191-213, 233-255 and 267-289" FT CDS complement(602386..603630) FT /transl_table=11 FT /locus_tag="BPP0569" FT /product="hypothetical protein" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi leucine-specific binding protein precursor LivK or FT LivC SWALL:LIVK_SALTY (SWALL:P17216) (369 aa) fasta scores: FT E(): 2.1e-05, 22.03% id in 363 aa, and to Aeropyrum pernix FT long hypothetical Leu/Ile/Val-binding protein APE2521 FT SWALL:Q9Y8W3 (EMBL:AP000064) (430 aa) fasta scores: E(): FT 1.2e-33, 30% id in 410 aa" FT /protein_id="CAE36154.1" FT /translation="MNQTRRRLTLGTGGLAAAMAFPAIVRAQPKRIPIAVVAGLTGRAG FT PWGIPVNDAVRLAVEQINASGGIKSKGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVL FT AVIGNVTSGATMVGSAVAEKSRTPMVSTDLGDSLTQRGMKYFFRIGAKASHLAATAVDF FT SEAMIKATGTKPRKVATMADDSTFSQDAIQGAIARIKKTDWDVQENVSFPAGKVSDFLP FT VLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMASVHIAGAPYTPEYVENLKKDA FT AFVTDAVGFVPELVANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDL FT SREALTEALRATDLQAGGNPFVLRDGVKFDQAGDNVRAKGLVMQLLDGQQRIVYPADIA FT TTKPVWPMPPWSKRT" FT misc_feature complement(603553..603630) FT /note="Signal peptide predicted for BPP0556 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.430 between residues 27 and 28" FT CDS 603886..604698 FT /transl_table=11 FT /locus_tag="BPP0570" FT /product="TetR family regulatory protein" FT /note="Internal region is similar to Bacillus halodurans FT transcriptional regulator BH3797 SWALL:Q9K6D2 FT (EMBL:AP001520) (202 aa) fasta scores: E(): 5.9e-18, 31.12% FT id in 196 aa, and to Mycobacterium tuberculosis putative FT regulatory protein MTV034.04 SWALL:O53661 (EMBL:AL021929) FT (204 aa) fasta scores: E(): 2.2e-06, 27.02% id in 185 aa. FT Possible alternative translational start site" FT /protein_id="CAE36155.1" FT /translation="MAVAPGFRVTAAPSSRLQEFHIKMQNTVDESSLVTRRRAQLVKAA FT IKLFSRMGYHAATVKDIADEAGVSAGLMYQYVSDKQDLLFLALQHIVQRNKEEMPLALK FT GVEDPIARLYRAIDAYTRVIAANQQAVLLTYRETKSLKPEYIEQMKELELETNQLITEC FT VTDCIRAGYLAQTHEELLVYRIIVAAHAWPLKHWRLRHIVTLDEYLEQAIHAPWMGLLL FT PRGTSRYEELRRAGELCPTRIASEPEVEDADQAPAPKAKKRARRSRAA" FT misc_feature 604006..604146 FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 1.6e-13" FT misc_feature 604042..604134 FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT CDS complement(604735..605172) FT /transl_table=11 FT /locus_tag="BPP0571" FT /product="hypothetical protein" FT /note="Weakly similar to Thermoplasma acidophilum FT hypothetical protein TA0352 SWALL:Q9HL78 (EMBL:AL445064) FT (164 aa) fasta scores: E(): 0.00039, 27.13% id in 129 aa, FT and to Archaeoglobus fulgidus hypothetical protein AF0203 FT SWALL:O30036 (EMBL:AE001092) (149 aa) fasta scores: E(): FT 0.00091, 31.53% id in 130 aa" FT /protein_id="CAE36156.1" FT /translation="MNETDIFEVELEDVYRYRLSYGGQSAYFHGLQNKTLIASRCSGCG FT FVWLPLRPICSKCYAPASEYPLSGKGEVITTIVLPQAPAHLAHLDAVIATALVRPDGAD FT TCIKAFMVVGENGAPPGTRVEARYLSKIRTIADFYFVPEQA" FT CDS complement(605169..606368) FT /transl_table=11 FT /locus_tag="BPP0572" FT /product="conserved hypothetical protein" FT /note="Similar to the N-terminal region of Homo sapiens FT mitochondrial nonspecific lipid-transfer protein SCP2 FT SWALL:NLTP_HUMAN (SWALL:P22307) (547 aa) fasta scores: E(): FT 1.9e-27, 30.78% id in 380 aa, and to the full length FT Archaeoglobus fulgidus 3-ketoacyl-CoA thiolase AF0438 FT SWALL:O29811 (EMBL:AE001074) (387 aa) fasta scores: E(): FT 1.6e-37, 37.65% id in 393 aa" FT /protein_id="CAE36157.1" FT /translation="MKVGIVGVGLIPWRVRYADKTYYELALDVTKAALEDARLSPGDVD FT HVVWGLSDLMVAWVRQCCPSTTMQDYIGMAGKSSVHVSAGAVTGAMSVRQGMIEIMSGM FT SDVTLVVGSGKGMDLWDPEQNKRSSAFLKAIMLDLDTNWEVPVEPLAAANFGFAVQAHI FT DRYGAPTEAQMAKVSVKNHRNALANPLAQSGMELTVDEVMNSRRIAGPIKMFDCCLYSE FT GAAALILASEDRAREICDDPIWIEGAGASNLRSYMPDFDHLGRLPCQQQSAQRAYSMAG FT ISDPLRQLDFIETHDLLSGVELMSYAELGLCEPGQGGRLIDEGFTERGGPMPVNPSGGM FT IGCGHAAGCSGISRVGEIVQQLRGRAGGTQVPINQGRAIFSAIGGPGISQSCTIVLGKS FT " FT misc_feature complement(605181..605618) FT /note="HMMPfam hit to PF02803, Thiolase, C-terminal domain, FT score 0.00018" FT CDS complement(606409..607212) FT /transl_table=11 FT /locus_tag="BPP0573" FT /product="conserved hypothetical protein" FT /note="Similar to Bordetella bronchiseptica arylmalonate FT decarboxylase SWALL:AMDA_BORBR (SWALL:Q05115) (240 aa) FT fasta scores: E(): 5.7e-16, 30.41% id in 240 aa, and to FT Pyrococcus horikoshii hypothetical arylmalonate FT decarboxylase PH0985 SWALL:O58713 (EMBL:AP000004) (238 aa) FT fasta scores: E(): 1.1e-27, 37.17% id in 234 aa. CDS is FT extented at the N-terminus in comparison to other proteins. FT Possible alternative translational start site" FT /protein_id="CAE36158.1" FT /translation="MLTAMNTPAHTLMPYDAALRSFPGLLRAPEAARTRLGVILPSVNT FT VVEPWFGQAVAADVRVHATRMLLASEVTAEALRRMDHEEGLDAARRIASCRPDAIAYCC FT TASSIVQGLDYDRRLRQSLEEATGKPCFTAVGAIIEALQACNARKIAIASPYTDAIDHA FT EKAFFEEAGFQVLNAANLNIAESFALAAPDARQMYELAQRAWHPDADALLISCLNMHAQ FT EVVGLLEQQLGRPVITSTTATLWKLLRSAGRADRIPGYGRLLAEH" FT CDS complement(607206..607973) FT /transl_table=11 FT /locus_tag="BPP0574" FT /product="short chain dehydrogenase" FT /note="Similar to Escherichia coli oxidoreductase UcpA FT SWALL:UCPA_ECOLI (SWALL:P37440) (263 aa) fasta scores: E(): FT 2.6e-19, 34.52% id in 252 aa, and to Rhodopseudomonas FT palustris putative 2-hydroxycyclohexanecarboxyl-CoA FT dehyrogenase BadH SWALL:O07457 (EMBL:U75363) (255 aa) fasta FT scores: E(): 1.6e-28, 39.68% id in 252 aa" FT /protein_id="CAE36159.1" FT /translation="MSQDFNDKVVLLGGASGGIGLAAARMMLERGARVALHYRSSADEL FT NKIAAQYGDERVLLVKGDLTRRQDVAAIVSATVERYGKIDAFMSTVGTALRILPFLETS FT EDTVDLTIAVELRSVIDSVRAVLPELIRNGGGRIVIIGSDSGKVGTSGESVSAACRGGA FT IAFAKSIAREYARHNVLANVVCPGPTDTGLWDDLVKNDEFGGKIGNAMVRAIPLRRTAR FT PQEVAAAAVFLVSDEASFITGQAISVSGGLTMC" FT misc_feature complement(607218..607958) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 3e-60" FT misc_feature complement(607890..607946) FT /note="1 probable transmembrane helix predicted for BPP0574 FT by TMHMM2.0 at aa 9-28" FT CDS complement(608036..609193) FT /transl_table=11 FT /locus_tag="BPP0575" FT /product="acyl-CoA dehydrogenase" FT /note="Similar to the C-terminal region of Rattus FT norvegicus mitochondrial, long-chain specific, acyl-CoA FT dehydrogenase ACADL SWALL:ACDL_RAT (SWALL:P15650) (430 aa) FT fasta scores: E(): 5.1e-50, 39.94% id in 373 aa, and to the FT full length Pseudomonas aeruginosa probable acyl-CoA FT dehydrogenase PA1535 SWALL:Q9I3H8 (EMBL:AE004582) (382 aa) FT fasta scores: E(): 1.8e-60, 46.25% id in 374 aa" FT /protein_id="CAE36160.1" FT /translation="MSIETSNLPGLKEEHELLRSQVWRFVEREVIPHAQAWEHDGHTPR FT PVIRRMGELGMLGMRFPESYGGADADTVASVVFAEELGRSTFGGFAITILTQTDTASPP FT IAAVGTPQQKARYLPAIVRGECLVAIAMTEPDVGSDIATLRTRAVRDGDEWVLDGAKTF FT ITNGVHADLYVVAARTDASARPSQGVSLFLVDKGTPGLRVERRLDKMGWKSSDTAQLSF FT DGCRVHAGALLGKPNRGFAALMRNVQNERLVLAAQALGGSQAAIAQTLDYTRLRKAFGA FT TLWDKQAIRHRLAMLAARVESARHFVYSVAALDARGVECVKEVSMIKALCGELVNEVMD FT DCVQFHGATGYMQGTAVERMYRDARVHAIGGGATEIMLEEVAKRM" FT misc_feature complement(608042..608485) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 3.8e-48" FT misc_feature complement(608495..608803) FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 1.3e-43" FT misc_feature complement(608807..609163) FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal domain, score 1.8e-22" FT CDS complement(609205..609957) FT /transl_table=11 FT /locus_tag="BPP0576" FT /product="short chain dehydrogenase" FT /note="Similar to Escherichia coli oxidoreductase UcpA FT SWALL:UCPA_ECOLI (SWALL:P37440) (263 aa) fasta scores: E(): FT 3e-27, 38.73% id in 253 aa, and to Rhizobium loti probable FT dehydrogenase MLR7106 SWALL:Q987C7 (EMBL:AP003011) (257 aa) FT fasta scores: E(): 8.7e-33, 43.2% id in 250 aa" FT /protein_id="CAE36161.1" FT /translation="MFDLSGKTALVTGASRGIGQNVALCLAQAGANVVLWGRDQAELEQ FT TRVRIDEYGVQSTIDAFDITEAESVRRATAQAIERFGHLDVLVVNAGVNVLRPFLDWTP FT QQWDHMIGVNLVGAMHTLQAVGRHMTERKQGSIITMSSIYSHVGAPDNSFYCLTKGGLL FT QLTKSLAMEWARHKVRVNAICPGWIETDLTAPYMQDAQVRAAGLKQIPLRRFGQPADIG FT PIAVYLASDEAQWTTGQSFVVDGGQIAR" FT misc_feature complement(609217..609945) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 7e-79" FT CDS complement(609975..611660) FT /transl_table=11 FT /locus_tag="BPP0577" FT /product="putative ligase" FT /note="Similar to Escherichia coli probable FT crotonobetaine/carnitine-CoA ligase CaiC SWALL:CAIC_ECOLI FT (SWALL:P31552) (522 aa) fasta scores: E(): 4.7e-34, 28.86% FT id in 485 aa, and to Pseudomonas diterpeniphila coenzyme A FT ligase TdtL SWALL:Q93QD6 (EMBL:AF274704) (543 aa) fasta FT scores: E(): 2.9e-58, 36.8% id in 538 aa" FT /protein_id="CAE36162.1" FT /translation="MALENYRMTDHSKNPLQFGFPLGAGLAAPSEDPLPLGERVAAKVL FT ARQAEAAPDRPFVYFNGQWLTYAEADRRANRAAHALAAAGVKPGDRVAIDLHNRLEYLD FT LWFGLSRLGAIQVPINTDYRAPQIAHTFKRSGIDAVVVQAALLPELEAALEGLESRPAL FT LLLDAAPAQVSAARGFDYAELVAAASDAPVPGCADVSGADIGAVMNTSGTTGPSKGVLL FT THAQQYILGRMMAADMHLGPDDVYYNYFPLFHNTAQAMLTIPVMLVGARMVLTERFSTS FT RFWPEVREHGCTAFYYIGEILHILLKSTTREDSKGSTLRVGWGIGGAADDLVAFRERFG FT VDLRSGYGSTEANVPCYVPHGSAKAGSAGRAAPGFEIRIADEHGQALPADSVGEILVRA FT AEPGALMAGYDGDPAATVAAWKDLWFHTGDSGKLDADGDLYFTGRIKDAIRVRGENVSA FT FEVERAISEDAAVLEVAAIAVPCELGGDDVKIVVVVRDGAQLEPQALVEHALARLPRFA FT VPRYVEFVDALPKTPTNKVMKHVLRAQPFTTNTWDRLQTPRSGT" FT misc_feature complement(610233..611465) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 3.9e-104" FT misc_feature complement(611007..611042) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(611711..612328) FT /transl_table=11 FT /locus_tag="BPP0578" FT /product="hypothetical protein" FT /note="No significant database matches" FT /protein_id="CAE36163.1" FT /translation="MVTMEPPSAMEEEFNEWYDTEHLPERAAVDGFETARRYVCLDGFP FT RYMAAYDLSSPAVLEGESYRNMAGERFSPWSQRILRKAKGLWRVTGEQVYPGQARACEA FT PRLLLLHYRGVPQAAAARLVDELRATYEPHAQVSQLRVIRYQSGAGEPPGHVALIEGKG FT SLGALRGPALEGENGRCIVVANEYARYWAYAPNPVLGKVLDD" FT CDS 612479..613285 FT /transl_table=11 FT /locus_tag="BPP0579" FT /product="enoyl-CoA hydratase/isomerase family" FT /note="Similar to Bacillus subtilis naphthoate synthase FT MenB SWALL:MENB_BACSU (SWALL:P23966) (271 aa) fasta scores: FT E(): 8.8e-16, 28% id in 275 aa, and to Ralstonia FT solanacearum probable enoyl-CoA hydratase protein RS03271 FT SWALL:Q8Y2N1 (EMBL:AL646058) (272 aa) fasta scores: E(): FT 1e-49, 54.43% id in 248 aa" FT /protein_id="CAE36164.1" FT /translation="MNYDDFKHIDFDRRPDGVLLATLNRPEVMNATNARLHWELSKLWN FT VINDDASVKVVVVTGAGDRAFSAGGDLEWIEGMIGDPEVVTAVMKEVADIVYNMLACEK FT PIISAINGTAVGAGLAVALLADVSVIAEDATFTDGHARIGVAAGDHAAIVWPLLCGMAK FT AKYYLMTADFINGREAERLGLVTFAVARDELMERAMAIAAKLARGSQTAIRGTKKALNN FT WMHMAGPIFDASLGIEMLGFLGADAREGLDAVRNKRAPDFPSARLP" FT misc_feature 612533..613048 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 3.5e-33" FT misc_feature 612797..612859 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 613473..614456 FT /transl_table=11 FT /locus_tag="BPP0580" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 3.6e-33, 37.72% id in 326 aa, and to Ralstonia FT solanacearum putative signal peptide protein RS00540 FT SWALL:Q8XUU5 (EMBL:AL646073) (317 aa) fasta scores: E(): FT 4.6e-29, 35.71% id in 308 aa" FT /protein_id="CAE36165.1" FT /translation="MGSSIFRRAVPVLAMLAFSAFCAHVGAAPFPNKDRPVRLIVPFTA FT GSSFDAGARAYAQALSEDLGANVVVENRPGADGVIGVSAAKTAAPDGYTILFTSLSTQV FT VNPHIFKKLAYDPINDFIPLIGTMKTTLVMAVGPSFPQGTAADFLEAARKNPGKHTYAS FT YTATTKMAGQMVAKAAGVDYLNIPYKSLNDAMSNMLGGLVDMIAADMPSIQPFFSKGVR FT PLAVLAPARLSAYPDIPTLAEYGLADVDIAGWFAAYVPKGTPADVTQILTDSLRKAAKS FT KYVRDFVTTFGIETFPLEGEALSTYQKAELEKWGKAVRDAGLYGTL" FT misc_feature 613473..613553 FT /note="Signal peptide predicted for BPP0580 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.983 between residues 27 and 28" FT misc_feature 613629..614441 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.3e-63" FT CDS 614459..615031 FT /transl_table=11 FT /locus_tag="BPP0581" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti gamma-BHC FT dehydrochlorinase mlr5878 SWALL:Q98AS1 (EMBL:AP003007) (179 FT aa) fasta scores: E(): 3.2e-08, 37.66% id in 154 aa, and to FT Streptomyces lavendulae LinA homolog SWALL:Q9X5P7 FT (EMBL:AF127374) (176 aa) fasta scores: E(): 0.029, 28.88% FT id in 180 aa" FT /protein_id="CAE36166.1" FT /translation="MQGDPMAGCIEEIRGRMAIQDVILKYARAIDRKDWSAVRAAFHEG FT ATDDHGEYRGGIDGMIEWIARRHAAIHQSMHFIGNLLVEWLPGRRALVETYYQAHFTLD FT GDAREARALWLDGQAGGGANLIVLGRYIDVFAARPDWRVAERTNVYESVLAPQQPPSGR FT NPANHWSTRDRHDMYFKIRRDLLPDAP" FT CDS 615049..616812 FT /transl_table=11 FT /locus_tag="BPP0582" FT /product="conserved hypothetical protein" FT /protein_id="CAE36167.1" FT /translation="MAARRQDMLGQGRSPSLAEECMTTEDKVDLLVIGSGAAGLSAAIT FT ARKLGLDVLVVEKTPVLGGTTAVSGGWAWIPCSPVARRAGVEDSTEQAATYLKHELGEA FT YSAPHVEAYLKHGPEMVAFLEDATEVRFLASPTFPDYHSEAPGAAMGRSIVAQPYDARL FT LGKHIKLLRRPLRQTTLFGLNIGSGTELGHFFNATRSVKSAYIVSKRLAAHCRDLLLYR FT RGTRLANGNALAARLINSAMDAGVRFSVSTQVERLEREGGRVTGAWVSIDGKPARRIRA FT DRGVVLACGGFSNDAALKQELFRHVAAGRPHASPVIASNVGDGLRLGMSAGGVVRNQLP FT DNAAWMPVSLVPMPGRETAAFPHVIDRAKPGMIAVLRNGKRFVNESHSYHDFGRAYIKS FT GSDGDIFLICDRRALRRYGLGFVKPFPFPVGKHVKSGYLIRGESIADLAGKAGIDAANL FT AETLARFNAGAPSGIDPEYGKGSTRYNRFQGDGGHAGNPCVAEIRSAPFYAVRLLIGDI FT GTFAGLATDEHARVLDGDGRIVAGLFAAGNDMQSIMGGNYPGAGINIGPALTFGYIAAR FT AAASSDAGRPG" FT CDS 617070..617957 FT /transl_table=11 FT /locus_tag="BPP0583" FT /product="conserved hypothetical protein" FT /note="Similar to Leuconostoc mesenteroides citrate lyase FT beta chain CitE SWALL:CILB_LEUMC (SWALL:O53078) (302 aa) FT fasta scores: E(): 5.9e-22, 30.42% id in 286 aa, and to FT Rhizobium loti citrate lyase beta chain MLR4422 FT SWALL:Q98E40 (EMBL:AP003004) (297 aa) fasta scores: E(): FT 2.5e-22, 30.39% id in 306 aa" FT /protein_id="CAE36168.1" FT /translation="MTTQVKPIRSFLFVPGNKESMLDKAALAKADALILDLEDSVPPAE FT KLAARELVARKIPALIAQGQRIWVRINRSAHIYDLDDILAVAQPGVEGVVISKPWGPED FT VYMASSMIAEAETRANLPLGSIGLIPLLETARSMQLCYEIAQMPRVVGIVGATAKNADM FT GRVLKFVWTPEGRETEYLKSRVVMAARAAGKQAIGGIWQQIKDLEGLARSSAFDRQLGM FT SGELALHPMQVETINRTYTPTAEDVAYYQGMIDALDAAQAQGRASVMYDGEHIDIAHVK FT TAHEVIALARAFDA" FT CDS 617993..618448 FT /transl_table=11 FT /locus_tag="BPP0584" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti probable monoamine oxidase FT regulatory protein MLR0905 SWALL:Q98LS1 (EMBL:AP002996) FT (150 aa) fasta scores: E(): 5.3e-29, 53.64% id in 151 aa, FT and to Deinococcus radiodurans MaoC-related protein DR1239 FT SWALL:Q9RUZ1 (EMBL:AE001972) (160 aa) fasta scores: E(): FT 2.7e-28, 51.35% id in 148 aa" FT /protein_id="CAE36169.1" FT /translation="MAGLYFEDFKTGMVVEHAIRRTVTETDNVLFSAMTYNCAPLHIDA FT EYSANSIYGQRLVNSMFLLALVAGITVYETTLGTTLGNLGFGEIAFPKPTFHGDTIRVE FT TEILETRLSRSRQDSGIVTFKHVARNQRDEIVCTAVRTGLMMLRPAA" FT misc_feature 618014..618382 FT /note="HMMPfam hit to PF01575, MaoC like domain, score FT 2.4e-14" FT CDS 618474..619640 FT /transl_table=11 FT /locus_tag="BPP0585" FT /product="acyl-CoA dehydrogenase" FT /note="Similar to Caulobacter crescentus acyl-CoA FT dehydrogenase family protein CC2328 SWALL:Q9A5W9 FT (EMBL:AE005903) (387 aa) fasta scores: E(): 2.2e-84, 55.81% FT id in 387 aa, and to Pseudomonas aeruginosa probable FT acyl-CoA dehydrogenase PA0879 SWALL:Q9I566 (EMBL:AE004522) FT (386 aa) fasta scores: E(): 1.2e-61, 44.41% id in 394 aa" FT /protein_id="CAE36170.1" FT /translation="MNYQLSEEQQAIVDAAEKICADFPHSYWREKDKKHEFPHEFFEAV FT ASGGWLGICMPEEVGGANLGVTEAALFMRVVAECGGQAAASSIHMNIFGLQPVVHFATQ FT AQKQAWLPPFGRGEHKACFAVTEPDPGLDTTKLKTVARKQPDGSYLITGKKVFISTAQV FT ADHMLILARTTPIEEVKKHSEGLSLFYTKLDRNYVDIREIDKLGRGAVDTNELFIDNLP FT VAKDALIGEEGKGLSYIFHGMNAERVLVAAEQVGMGRAVLKLATQYAKERVVFGRPIGK FT NQGIQHPLARSWAELEAANHMMLAAADLYDRGESCGSEANAAKLLASEACMQACQNSIL FT THGGYGYAKEYHVERFMREAWIGYIAPVSPQLVLSNIAERKLGLPKSY" FT misc_feature 618486..618839 FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal domain, score 3.1e-06" FT misc_feature 618843..619160 FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 1.5e-07" FT misc_feature 619170..619619 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 5.3e-53" FT CDS 619733..620971 FT /transl_table=11 FT /locus_tag="BPP0586" FT /product="CaiB/BaiF family protein" FT /note="Similar to Rhizobium meliloti putative conserved FT membrane-anchored protein SMB21182 SWALL:Q92V66 FT (EMBL:AL603645) (394 aa) fasta scores: E(): 1.2e-45, 36.69% FT id in 387 aa, and to Pseudomonas aeruginosa hypothetical FT protein PA0446 SWALL:Q9I672 (EMBL:AE004482) (407 aa) fasta FT scores: E(): 1.2e-45, 36.07% id in 413 aa" FT /protein_id="CAE36171.1" FT /translation="MAVTGPLEGIRVLDLTVALAGPLGSLLLGGLGAEVIRVESPGGGD FT IARNNPPYVGKDGIHFGVRHEDEVSLTTLNRARNKKSVTLNLKTEQGRALFMELAKECD FT VLIENASEGTTARLGVDYESVRKANPKIIYASVKAFGEPSPYPKLKGMDIIVQALSGIM FT DVTGVADGPPTRWALPIADMVAPLYAVNGILAALIHRGKTGEGQCVQVSMLDCLASLVA FT EEHFDVFMAHGYPKRSGNFHDRLVPFGVYGTSDGHVAMVAFQPDWFGSLMQAIGKPELA FT EDPRYATRGPRMKHATEINAMIEDWTRRHTSAEVIHELQEKRGVPAAPVRSPQEVLQDP FT ALRQRGAVVKLEHPGLANIDAMGMGLPIQFSGTPSSFGQPAQELGASNNEIYQGLLKLS FT DAQLDQLRGAGVI" FT misc_feature 619979..620548 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 7.4e-58" FT misc_feature 620318..620341 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 620973..622148 FT /transl_table=11 FT /locus_tag="BPP0587" FT /product="CaiB/BaiF family protein" FT /note="Similar to Homo sapiens alpha-methylacyl-CoA FT racemase AMACR SWALL:AMAC_HUMAN (SWALL:Q9UHK6) (382 aa) FT fasta scores: E(): 1.9e-47, 41.81% id in 342 aa, and to FT Caulobacter crescentus hypothetical protein CC1841 FT SWALL:Q9A785 (EMBL:AE005858) (375 aa) fasta scores: E(): FT 5.9e-75, 56.31% id in 364 aa" FT /protein_id="CAE36172.1" FT /translation="MGDAAKAGHRPGPLAGVKVVEIAGIGPGPLAGMFLADLGATVIRV FT DRKQPSGLGAPRPVQFDLGLRNRKSIRVDLKDPAAVEMVLELLGQADALIEGFRPGVME FT RLGLGPDACLARNPRLVYGRVTGWGQEGPLAKAAGHDLNYISITGALHAMGRAGQAPTP FT PLNVLGDYAGGSLYLAFGLLAGILEARGSGKGQVVDAAMVDGVASLMTVIMGMHGAGMH FT GKQRGTNLVDTGAPCYEVYECADGKYVSVAPIEDKFYRLLLEKLQLQDHPLLQEQMDRA FT AWPQAKQVLAARFRERTCDEWTELLGASDACLAPVLDFDEALAHPHIRQRGTLTDIEGV FT VHPAPGPRFSRTPAGRPEPPAPLSTGNAVAALRGWLPDEHILAYQERQTFI" FT misc_feature 621183..621758 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 8.6e-68" FT CDS 622159..623133 FT /transl_table=11 FT /locus_tag="BPP0588" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 2.1e-34, 39.43% id in 317 aa, and to Comamonas FT testosteroni hypothetical protein OrfJ SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 3.2e-33, 40.84% FT id in 284 aa" FT /protein_id="CAE36173.1" FT /translation="MTIARTLFGAAALAMLAVLASPAMGADFPDGKPVRIIVPTGVGSG FT TDLTARQIAASMGKAWSVPVVVENKAGASGMIGTEFVAKATPDGYTLLTTYAQHYTNQL FT VMNTPYDAVKDFEPVARVANSALVISVSTSSPYKTLGDVIEAARKKPGVITYGSSGNGT FT TSYLAATLFEEMAKVKLNHIPYKAPGQVALDAASGQIDLSFNGMSSVLPLIKGGRLRAL FT AVTTLQRSQSLPDVPTVAESGYPGYETASPIWLFVPRGTPQAIVDRLSAGVTAAAGTTE FT FQDLCRQQGLEVDIQDAATAKAAGPGELEKWRKLMSTAGAPKG" FT misc_feature 622159..622233 FT /note="Signal peptide predicted for BPP0588 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 25 and 26" FT misc_feature 622303..623121 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 4.8e-80" FT CDS 623144..623566 FT /transl_table=11 FT /locus_tag="BPP0589" FT /product="hypothetical protein" FT /note="Weakly similar to Streptomyces maritimus FT hypothetical protein EncO SWALL:Q9KHK0 (EMBL:AF254925) (130 FT aa) fasta scores: E(): 0.053, 26.51% id in 132 aa, and to FT Ralstonia solanacearum hypothetical protein RS03879 FT SWALL:Q8XS81 (EMBL:AL646079) (143 aa) fasta scores: E(): FT 5.7, 25.34% id in 146 aa" FT /protein_id="CAE36174.1" FT /translation="MADLCDIAQPALDAVCAEWNRAGARWDADGLAATYCEDGLLFGGR FT PGHYVGRESIRAYFATYDGVILAGGMTLSETALRTLGEDCILAQGMVCFAFTLAGQAQT FT RSTLRATLVLRRDAGRWRILQHHFSSEPAAPPLGQD" FT CDS 623586..624269 FT /transl_table=11 FT /locus_tag="BPP0590" FT /product="nitroreductase family protein" FT /note="Similar to Pseudomonas putida 4-nitrobenzoate FT reductase PnbA SWALL:Q9FD36 (EMBL:AF292094) (227 aa) fasta FT scores: E(): 2.1e-18, 34.65% id in 202 aa, and to Ralstonia FT solanacearum probable oxidoreductase protein RS03970 FT SWALL:Q8XYZ8 (EMBL:AL646065) (235 aa) fasta scores: E(): FT 1.6e-21, 39.17% id in 217 aa" FT /protein_id="CAE36175.1" FT /translation="MTAGHADIEALKRLSAGRSTCRAYLPRQVPEAVIRDIVDVARRTA FT SWCNTQPWQLVVASGASTDRFRQALMEQARRHPELDSDLPFPAEYRGVYLDRRRRSGLQ FT LYEALGIERDDKARRASQSFENFRLFGAPHVAIVTVARELGAYGAVDVGGFVGAFLLAA FT HAHGVATTPQAALAMQSGFIRRYFGLDEGRAVVCGISFGYADRAHPVNGYRTERAGLDD FT ILQMV" FT misc_feature 623613..624155 FT /note="HMMPfam hit to PF00881, Nitroreductase family, score FT 0.0028" FT CDS 624304..625077 FT /transl_table=11 FT /locus_tag="BPP0591" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /note="Similar to Rhizobium loti enoyl CoA hydratase FT MLL5584 SWALL:Q98BG7 (EMBL:AP003007) (257 aa) fasta scores: FT E(): 4.4e-22, 38.58% id in 241 aa, and to Bacillus FT halodurans enoyl-CoA hydratase BH1135 SWALL:Q9KDS6 FT (EMBL:AP001511) (260 aa) fasta scores: E(): 6.9e-22, 35.51% FT id in 245 aa" FT /protein_id="CAE36176.1" FT /translation="MTLLIDNPAPHVRRLTLNRPERMNALDGPTLQMLNDAVRECGAAA FT DVKVLVIRGQGRAFCAGNDLKWLAGGVLADRAAHMRHQDLMQDTYERLESAPQIVLASV FT NGYAMAGGFELALACDLMIADAQAQLGDEHIRRNLLPSGGSSQRLPRKLGLQRAMYYLV FT TGRRMTGQEAVELGLAAQAVPAEQLERATLELAGEIARADALALASMKEMVRKSMELPL FT SDGLRHERWMQHRYRTQSPSLEAGVARFAGGRKDG" FT misc_feature 624340..624855 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 2e-40" FT misc_feature 624604..624666 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 625233..626402 FT /transl_table=11 FT /locus_tag="BPP0592" FT /product="extracellular ligand binding protein" FT /note="Weakly similar to Pseudomonas aeruginosa leucine-, FT isoleucine-, valine-, threonine-, and alanine-binding FT protein precursor BraC SWALL:BRAC_PSEAE (SWALL:P21175) (373 FT aa) fasta scores: E(): 2.8e-13, 25.69% id in 362 aa, and to FT Ralstonia solanacearum probable leucine-specific binding FT precursor transmembrane protein RS02149 SWALL:Q8XPP6 FT (EMBL:AL646085) (380 aa) fasta scores: E(): 1.7e-11, 25.06% FT id in 379 aa" FT /protein_id="CAE36177.1" FT /translation="MKTSFHLAVTLKSGFAIAMLAAATLSHAETIKLGMSIPLSGSGAN FT WGKGSEWLCAKAAEEIKAAGGVKVQGKVYDFECVGYDNKYNAAEGAKVAQALVSRDGVK FT YVAGSIGVAPVRALQSLTERRGVLLFTAAWGNSIKGPKFPLTFTQMNSVNEISEPMIAH FT VKKLHPEIKTVVLLNPNDATGQETEKVAKAAWEKNGVKVLASDWYERGTSEFQPIAAKL FT NSLKPDLVDLASTPPADAGLVFRELKALGWNGVKVVEVGTGADGLLATGKDAVDGTYLG FT AAVAVDGLSAHQKALNDGVKKVTGENINSVQIGFYDSVYAIKAAMEKAQSVDPQQVAKV FT MPDVKFQSFFGEVDFGGKSVYGSDQQMQLPVIITQISGTALKEVGRVQK" FT misc_feature 625233..625316 FT /note="Signal peptide predicted for BPP0592 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 28 and 29" FT CDS 626419..627294 FT /transl_table=11 FT /locus_tag="BPP0593" FT /product="putative branched-chain amino acid transport FT system permease protein" FT /note="Similar to Pseudomonas aeruginosa high-affinity FT branched-chain amino acid transport system permease protein FT BraD SWALL:BRAD_PSEAE (SWALL:P21627) (307 aa) fasta scores: FT E(): 2.2e-18, 26.62% id in 293 aa, and to Archaeoglobus FT fulgidus branched-chain amino acid ABC transporter, FT permease protein AF0825 SWALL:O29433 (EMBL:AE001047) (297 FT aa) fasta scores: E(): 7.6e-26, 35.66% id in 286 aa" FT /protein_id="CAE36178.1" FT /translation="MQDNLQLLFTALQISSVYILFSLGLTIIFGVLKVVNFAHGQFFTF FT SALVLSLALSWLAPHVGNPFVVYLLAGLAGLAACLLFGLVLYQFGFKRLERDMIGSFIL FT SAGLVLFFEGLMLEIFGGAVRPVPALIDGNVDLLGLSVSKQRLVLFVFAVALTTLIITL FT LRSTKFGKALRAVAIDQEAAMLQGIAYRKIALYGFLIATGVAAIAGMLIAPVAAVTPTL FT GDSYLVKGFIAVVVGGMGSIVGAIFGSLLIALLESFIGFYFDPSAANLTIFVIVMLVLL FT IKPKGFFGND" FT misc_feature 626428..627288 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 2.9e-32" FT misc_feature join(626446..626514,626527..626595,626608..626676, FT 626713..626781,626857..626910,626998..627066, FT 627109..627177,627196..627264) FT /note="8 probable transmembrane helices predicted for FT BPP0593 by TMHMM2.0 at aa 10-32, 37-59, 64-86, 99-121, FT 147-164, 194-216, 231-253 and 260-282" FT CDS 627287..628183 FT /transl_table=11 FT /locus_tag="BPP0594" FT /product="putative branched-chain amino acid transport FT system permease protein" FT /note="Similar to Ralstonia solanacearum probable FT amino-acid transmembrane ABC transporter protein RS01987 FT SWALL:Q8XTT9 (EMBL:AL646076) (299 aa) fasta scores: E(): FT 4.8e-21, 33.33% id in 264 aa, and to Brucella melitensis FT high-affinity branched-chain amino acid transport system FT permease protein BMEII0101 SWALL:Q8YDS4 (EMBL:AE009648) FT (315 aa) fasta scores: E(): 7.8e-17, 26.35% id in 296 aa" FT /protein_id="CAE36179.1" FT /translation="MTKSKDLVFILFIAAVLVGCIALGSGYIGNLVVWMSVAAVMATSL FT RFVLLIGELNFATAAFFGIGAYCTGYIANYLDLPFFLILALSALLALAVSVVFGCITLK FT VKGPYFLLIGFAFTEALRILYTRTDVLGGNSGLVGIFPPIWLEAHYHYFATVLCFALIV FT ALLFVERSNLGKVFVAIRDNENVVRSLGIPVFMTKVLCFAVASAVAGLAGSVHAYASNV FT ISSLDFGFMLSTFALAYLKVGGEDSPLGPIIGAVLLVGIASYAQTLGGNEHILYGLAII FT VSVLFMPKGLMGLFKSR" FT misc_feature join(627305..627373,627383..627436,627455..627514, FT 627524..627592,627611..627664,627722..627790, FT 627851..627919,627947..628006,628025..628093, FT 628103..628171) FT /note="10 probable transmembrane helices predicted for FT BPP0594 by TMHMM2.0 at aa 7-29, 33-50, 57-76, 80-102, FT 109-126, 146-168, 189-211, 221-240, 247-269 and 273-295" FT misc_feature 627356..628174 FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 2.5e-06" FT CDS join(628193..628831,628835..628942) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0595" FT /product="ABC transport system ATP-binding protein FT (pseudogene)" FT /note="Similar to Rhizobium loti ABC transporter, FT ATP-binding protein MLR9038 SWALL:Q982J4 (EMBL:AP003015) FT (252 aa) fasta scores: E(): 4.8e-27, 43.72% id in 247 aa, FT and to Archaeoglobus fulgidus branched-chain amino acid ABC FT transporter, ATP-binding protein AF0823 SWALL:O29435 FT (EMBL:AE001047) (248 aa) fasta scores: E(): 8.5e-25, 38.05% FT id in 247 aa. Contains a nonsense mutation (opal) after FT codon 213" FT /db_xref="PSEUDO:CAE36180.1" FT misc_feature join(628289..628831,628835..628855) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.1e-38" FT misc_feature 628310..628333 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 628932..629651 FT /transl_table=11 FT /locus_tag="BPP0596" FT /product="ABC transport system ATP-binding protein" FT /note="Similar to Pseudomonas aeruginosa high-affinity FT branched-chain amino acid transport ATP-binding protein FT BraG SWALL:BRAG_PSEAE (SWALL:P21630) (233 aa) fasta scores: FT E(): 1e-29, 44.82% id in 232 aa, and to Thermotoga maritima FT branched chain amino acid ABC transporter, ATP-binding FT protein TM1139 SWALL:Q9X0M3 (EMBL:AE001771) (239 aa) fasta FT scores: E(): 6.5e-32, 48.1% id in 237 aa" FT /protein_id="CAE36181.1" FT /translation="MASENTLTVRKLSVSYGTVPAIIDVDLEVKGGSIVSLIGANGAGK FT STLIKAITGLVKVAGGEIHYGGKPLANREPNVILGHGVALVPEGRRLFGSMTVRENLEM FT GAYRIDDARRRAELLATCLHYFPDLEAKLPSPANALSGGQQQMVAVARALMSAPSMLLL FT DEPTIGLAPAFVNVISKVVRDINQQGVSVLLVEQNAEVALRVSDYSYVLESGTVVKHGP FT AEVFLNDPDIKKAYLGL" FT misc_feature 629025..629576 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.7e-47" FT misc_feature 629046..629069 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 629349..629393 FT /note="PS00211 ABC transporters family signature." FT CDS complement(629666..631636) FT /transl_table=11 FT /locus_tag="BPP0597" FT /product="NADH:flavin oxidoreductase / NADH oxidase family FT protein" FT /note="Similar to Thermoanaerobacter brockii NADH oxidase FT SWALL:NADO_THEBR (SWALL:P32382) (651 aa) fasta scores: E(): FT 8e-46, 33.78% id in 672 aa, and to Pseudomonas aeruginosa FT probable oxidoreductase PA4986 SWALL:Q9HUH9 (EMBL:AE004911) FT (648 aa) fasta scores: E(): 2.3e-45, 33.23% id in 668 aa" FT /protein_id="CAE36182.1" FT /translation="MSMYRRIFSPLRIGGVEIPNRIVRTAHATRLAQGYVNDDLIAYHL FT ERAKGGAGLSILESTSVHPSSTFSLSAADDGAIAPMRRLADAIAPTGMKLFTQLWHGGY FT TDPAADGGLPWAVGPLPGRYSVAPPIPMTTGQIGELVEAYGKAAARMQAAGLHGVEVLA FT GAGYLFSQFFSPVLNQRDDAYGGSFDNRIRALLETLRAIRAATSPDFALGVRIGGSTDA FT RILSTDDVNAIALRAQAEGLIDFVNITHGDYYFHVERYAGMDRPVGYQLPASDHVSQGI FT TVPRIIVGRYATLDDAEQALKEGHAEMISIVRGMIADPMLVAKARDGRGTEVRPCISCN FT QGCIGGVFTGRMRCAVNAAVGDERRLAEDLIVAAAQPRKVVVVGGGVAGMEAARVARLM FT GHRVTLIEAASDLGGLLNTARRLPKLHLIGDIAIWLESEIYRLGVDVRLATYVEADEVL FT AEQPEVVIVATGSQPVDAGEFRQTADPTAALAIAPDARVLTSFELGMESRGDFGKTALV FT FDDVGHYEAIGCCEALIEAGAEVTYVTRHQMFAPAVEGTGRTQAALQRFYKAGNFRIVT FT QSALVSIERGSAQIRSLYGERTETVAAETVVLAGYRQSQNEVWAALRERVPQLHIVGDA FT LSARDIQPAIREGHLAARSIT" FT misc_feature complement(630641..631621) FT /note="HMMPfam hit to PF00724, NADH:flavin oxidoreductase / FT NADH oxidase family, score 8.6e-47" FT CDS complement(join(631633..632007,632009..632416)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0598" FT /product="short chain dehydrogenase (pseudogene)" FT /note="Similar to Rhizobium meliloti D-beta-hydroxybutyrate FT dehydrogenase BdhA SWALL:BDHA_RHIME (SWALL:O86034) (258 aa) FT fasta scores: E(): 7.2e-13, 29.61% id in 260 aa, and to FT Bacillus halodurans 3-oxoacyl-(acyl-carrier protein) FT reductase BH0932 SWALL:Q9KEC1 (EMBL:AP001510) (252 aa) FT fasta scores: E(): 4.5e-18, 32.03% id in 256 aa. Contains a FT frameshift after codon 136" FT /db_xref="PSEUDO:CAE36183.1" FT misc_feature complement(join(631657..632007,632009..632401)) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 8.3e-37" FT CDS 632703..633668 FT /transl_table=11 FT /locus_tag="BPP0599" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni hypothetical FT protein OrfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta FT scores: E(): 3.3e-31, 37.74% id in 302 aa, and to Ralstonia FT solanacearum putative signal peptide protein RS00540 FT SWALL:Q8XUU5 (EMBL:AL646073) (317 aa) fasta scores: E(): FT 3.4e-30, 36.16% id in 318 aa" FT /protein_id="CAE36184.1" FT /translation="MINRRFFCLAIVSAALPMWAQAASYPNQPVRVIVSNAPGTGTDIT FT ARFLANQVAGKLGQPTVVENKAGAGGVLATDFVARTEPDGYTVLFSTGAHFMLPAIYSK FT LNFDAKADFIPVGVFAQSPMVVFVPADSPFRSIEDLVAAARKAPDTISYSSPGVGTSSH FT LAAVMMFNQAKVDLRHIPYKSASQAAMEVASGQAQVGINGTGVTLPLLQAGKIRILAVT FT SLKRSASLPDVPTLDESGLKGYDFVAPILALVRAGTPAPIVQTLGDAFTAAAAQPEFKE FT LCLKQGLDVAIQGPAELKVSAPKEFDKARRLSELAGVQAR" FT misc_feature 632703..632768 FT /note="Signal peptide predicted for BPP0599 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.988) with cleavage site FT probability 0.887 between residues 22 and 23" FT misc_feature 632835..633656 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3.4e-82" FT CDS 633680..634963 FT /transl_table=11 FT /locus_tag="BPP0600" FT /product="acetyl-CoA hydrolase/transferase" FT /note="C-terminus is similar to the C-terminal region of FT Neurospora crassa acetyl-CoA hydrolase Acu-8 FT SWALL:ACU8_NEUCR (SWALL:P15937) (525 aa) fasta scores: E(): FT 1.5e-08, 25.7% id in 389 aa. Full length CDS is similar to FT Clostridium kluyveri 4-hydroxybutyrate coenzyme A FT transferase Cat2 SWALL:CAT2_CLOKL (SWALL:P38942) (429 aa) FT fasta scores: E(): 5.6e-41, 35.27% id in 394 aa" FT /protein_id="CAE36185.1" FT /translation="MEKRLLIDRLQGLLRAGDALWWGQTTAEPLTLTRAVTEHRHALAH FT GGRLKVFVGIGASDTLHPGLADAIDFFGYTASGTHRKLAQAGVLDIVPSHYSQLPALIR FT AGVLPADVVLLQVSPPDEDGRYSLGLVHEYLTAALQRARVVIAEVSPEIPWTHGSVYLR FT AGDFDLLVDAEHPPLDAASAEPGPVERAIAGHIAAHVQDGATLQVGIGKLPEAVLSALY FT DRRDLGLHTGAAGDGIVALAEAGALTNARKGRDEGVGVAGVLTGGARLRKWAHRNPRLM FT LQGTDYTHDPQVLASLNQLVAINSAVEVDLTGQVNAEVAGGVYVGALGGAVDFLRGAAR FT SKGGVPIVALPATAKGSTRIVAQLSGPVSTPRCDAGLIVTEHGVADLRGLSLSRRVQRM FT LDIAAPEHRAELERQAHEALARCGAAFA" FT misc_feature 633680..634954 FT /note="HMMPfam hit to PF02550, Acetyl-CoA FT hydrolase/transferase, score 7.3e-36" FT CDS 634989..636497 FT /transl_table=11 FT /locus_tag="BPP0601" FT /product="AMP-binding enzyme" FT /note="Similar to Arabidopsis thaliana 4-coumarate--CoA FT ligase 2 4CL2 SWALL:4CL2_ARATH (SWALL:Q9S725) (556 aa) FT fasta scores: E(): 5.8e-31, 30.96% id in 507 aa, and to FT Rhizobium meliloti probable long chain fatty acid CoA FT ligase SMA0150 SWALL:Q930W4 (EMBL:AE007202) (508 aa) fasta FT scores: E(): 3.4e-42, 32.31% id in 489 aa" FT /protein_id="CAE36186.1" FT /translation="MNREMAERIHELLDRWLIEAPQRAFIHLPDRTLSYADLGGMAERL FT ERELRADGVRAGDRVLVVAENCAEHAALLVACSRVGAWSCGVNARMAQGEVEAYAAKAD FT ARVTYFTAGVSQAAAAHAVRHDVRPSCLDGLARSALRTEAVAETGSLAGEVAAIIFTSG FT TTGTPKGVMMTHRGVLHFARVSAESRALDARDKVYAYAPMTHIFGLGTVLLASLHAGAA FT LEMRPQFDPAELFDALAQRGVSQVQGPPALFARLLQYCAEHGIARPEAPRLRYLYAGAG FT LLDMALKQEVEAVFGQTLHHGYGLSEYAGSLHATRLGESRADTSSGYAFAGAQLRIVDP FT ATGRPLPAGERGEIWLRGVGLMPGYFRDAQATAEAMRDGGWYASGDLGELHADGALLVV FT GRIKEMIIRSGFNVYPAEVEQALNGFAGILRSAVVGQKEADGNEAVIAFVVQDRANPPD FT MAALRQHLRTQLAPYKRPARIIAIDELPVSANGKLQRRRLLEKL" FT misc_feature 635088..636287 FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 2.9e-96" FT misc_feature 635460..635495 FT /note="PS00455 Putative AMP-binding domain signature." FT misc_feature 635577..635645 FT /note="1 probable transmembrane helix predicted for BPP0601 FT by TMHMM2.0 at aa 197-219" FT CDS complement(636509..637318) FT /transl_table=11 FT /locus_tag="BPP0602" FT /product="IclR family regulatory protein" FT /note="Similar to Pseudomonas putida pca regulon regulatory FT protein PcaR SWALL:PCAR_PSEPU (SWALL:Q52154) (291 aa) fasta FT scores: E(): 3e-12, 26.55% id in 241 aa, and to Ralstonia FT solanacearum putative transcription regulator protein FT RS05096 SWALL:Q8Y1D3 (EMBL:AL646060) (273 aa) fasta scores: FT E(): 2.7e-21, 35.07% id in 268 aa" FT /protein_id="CAE36187.1" FT /translation="MTSLPDTVDEHDSESAALMTVERGLKVLRAFRSDRTPLSNAELVR FT RTGLPKATVSRLTSTLLQVGFLRQVPGRREFELAAGSLGIGHAYLDTNEMLQAAQPLLQ FT NLADQLDVSVALGIQDGLDLLYIGYRVSRKVATLRLGVGSVLPMSTTSIGRAYLWALPC FT DQQRQLIAEYKRHAGDEGAALERSIHASFDELASTGTCAVMGGYQRRTFGVAMPIWAGR FT QRIPISMSCGKADVELDLQAERERIAPALKQTAAALQELLADFDGQL" FT misc_feature complement(636536..637093) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 4.8e-08" FT CDS complement(637315..638124) FT /transl_table=11 FT /locus_tag="BPP0603" FT /product="IclR family regulatory protein" FT /note="Similar to Pseudomonas putida pca regulon regulatory FT protein PcaR SWALL:PCAR_PSEPU (SWALL:Q52154) (291 aa) fasta FT scores: E(): 8.9e-07, 29.7% id in 239 aa, and to Ralstonia FT solanacearum putative transcription regulator protein FT RS05096 SWALL:Q8Y1D3 (EMBL:AL646060) (273 aa) fasta scores: FT E(): 5.5e-20, 35.33% id in 266 aa" FT /protein_id="CAE36188.1" FT /translation="MLSRFPDPAPAAQSRRPTVAPFARALSVLASFSSRDQWLSNSEFV FT ARTGLPASTVTRMTSTLVTLGYLHCAPDTRRFCLSPSVLALGYGAAVDAEIHRPTNQLM FT RVFAEHHQVNVQLSCRDRLDLVVMDSCLTDALPALLQPGVGTRLGMASSAAGWALLACL FT PEAERDYLLRARPHAPAEPKSDWNPMRRHANEAILQVRKDGFCVALGESGHPMTMVAAP FT IRRPGLAPLAVSCMGPATRIGRARSTRELGPALVRMVEEIQRVWNTS" FT misc_feature complement(637330..637896) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 8.6e-08" FT CDS complement(638340..641843) FT /transl_table=11 FT /locus_tag="BPP0604" FT /product="putative pyruvate carboxylase" FT /EC_number="6.4.1.1" FT /note="Similar to Homo sapiens pyruvate carboxylase, FT mitochondrial precursor PC SWALL:PYC_HUMAN (SWALL:P11498) FT (1178 aa) fasta scores: E(): 5.3e-207, 49.91% id in 1150 FT aa, and to Rhizobium meliloti probable pyruvate carboxylase FT protein SMC03895 SWALL:Q92L13 (EMBL:AL591793) (1152 aa) FT fasta scores: E(): 0, 61.05% id in 1153 aa" FT /protein_id="CAE36189.1" FT /translation="MTTVIKSILVANRGEIAIRAMRAAAELGIRTVAIYANEDRFSLHR FT FKADESYPIGQGRRPIEAYLDIPGILDIARRAGVDAIHPGYGFLSENPDFAQACDDAGI FT AFIGPSPAVLRSLGNKVAARNLAISLGVPVVPATDALPHDDAACLRLAREVGYPLMLKA FT SWGGGGRGMRAIHDEAELLPAIASARREAGAAFGNDEVYLEKLVQRAHHVEVQVLGNQH FT GNLVHVFERDCSVQRRNQKVIERAPAPYLGDAGRQALFQAALTLTRGVGYTHAGTVEFL FT MDADTGNFYFIEVNPRIQVEHTVTEEVTGLDIVKAQIRVTEGVRIGEDDYLPAQEHIRL FT SGHALQCRITTEDPRKDFAPDYGRITAYRSAAGPGIRLDAGTAYTGAVITPYYDSLLVK FT VTARGHTPEETSQRMDRALREFRIRGVATNLAFLEKVIAHPQFSQGKCTTRFLDTTPEL FT FEIAPRKDRASRLLRFIGEVVVNGHPEMQGRTPPAAPLARPALPKADLAAPLPAGTRDR FT LLELGPAAFSAWMRTQPRTLLTDTTMRDAHQSLFATRMRTTDMLAIAPHYARLLPELFS FT LECWGGATFDVAMRFLKEDPWDRLRKLRAAAPNILFQMLLRGSNAVGYTNYADNVVRYF FT VQQAAREGIDLFRVFDSLNWVENMRVAMDAVIESGALCEGTICYTSDIFDASRPKYQLK FT YYVDMARQLERAGAHIIGIKDMAGVCRPPAARALVQALREEVGLPLHFHTHDTSGGSVA FT SVLAAAEAGADAVDGAMDAMSGLTSQPSLGVIIAGLQHTGHETGMRHESIAPFSRYWEN FT VRRYYAPFEADMRSGTSDVYRHEMPGGQYTNLREQARAMGLDARWDDIARCYADANQLF FT GDIVKVTPSSKVVGDMALFMVAGGITAADVLDPERELSLPESVVSMMRGELGYPADGFP FT PALQQRILKGEAPLEGRAGAHIPDVDLEAERGRAEKATDGPVSDADLASWLMYPKVYAD FT YAAHQRSYGDVCAIPTPVFFYGLAEGEEMAVDIDQGKTLLIRLLGRAEEKGGSEHRLFF FT ELNGQSRSVRVARAGLAGAQDQARPKAQDGNAGQLGAPMPGMVSAVSVRAGQAVRRGAP FT LVTIEAMKMENTLCAERDGVVSRIVVAVGDRIEAKDLLLEFAPQAAQPADVPRQRPRAG FT A" FT misc_feature complement(638400..638603) FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme, FT score 2.4e-15" FT misc_feature complement(638727..639353) FT /note="HMMPfam hit to PF02436, Conserved carboxylase FT domain, score 7.9e-86" FT misc_feature complement(639366..640220) FT /note="HMMPfam hit to PF00682, HMGL-like, score 6e-41" FT misc_feature complement(640485..640808) FT /note="HMMPfam hit to PF02785, Biotin carboxylase FT C-terminal domain, score 4.1e-57" FT misc_feature complement(640827..641489) FT /note="HMMPfam hit to PF02786, Carbamoyl-phosphate synthase FT L chain, ATP binding domain, score 6.6e-93" FT misc_feature complement(640950..640973) FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT misc_feature complement(641331..641375) FT /note="PS00866 Carbamoyl-phosphate synthase subdomain FT signature 1." FT misc_feature complement(641493..641834) FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain, score 3.1e-42" FT CDS complement(join(641886..642794,642794..643033)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0605" FT /product="acyl-CoA dehydrogenase (pseudogene)" FT /note="Similar to Acinetobacter sp. SE19, and Acinetobacter FT sp. NCIMB9871 acyl-CoA dehydrogenase FadE SWALL:Q9F7E6 FT (EMBL:AF282240) (384 aa) fasta scores: E(): 2.5e-106, FT 72.96% id in 381 aa, and to Pseudomonas aeruginosa probable FT acyl-CoA dehydrogenase PA1631 SWALL:Q9I391 (EMBL:AE004590) FT (384 aa) fasta scores: E(): 6.1e-109, 73.68% id in 380 aa. FT Contains a frameshift after codon 80" FT /db_xref="PSEUDO:CAE36190.1" FT misc_feature complement(641898..642347) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.5e-73" FT misc_feature complement(641967..642026) FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT misc_feature complement(642360..642668) FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 1.2e-51" FT misc_feature complement(642630..642668) FT /note="PS00072 Acyl-CoA dehydrogenases signature 1." FT misc_feature complement(join(642672..642794,642794..643030)) FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal domain, score 1.2e-11" FT CDS 643272..644147 FT /transl_table=11 FT /locus_tag="BPP0606" FT /product="putative enoyl-CoA hydratase" FT /note="Similar to Pseudomonas aeruginosa (R)-specific FT enoyl-CoA hydratase PhaJ2 SWALL:Q9LBK1 (EMBL:AB040026) (288 FT aa) fasta scores: E(): 1.2e-48, 50.69% id in 288 aa, and to FT Pseudomonas mendocina hypothetical 21.4 kDa protein FT SWALL:Q9ZER1 (EMBL:AJ012480) (198 aa) fasta scores: E(): FT 1.1e-29, 45.81% id in 203 aa" FT /protein_id="CAE36191.1" FT /translation="MSIDPRHLLARSFPVIEHAYSLRDTALYALGLGLGADPMDGGQLR FT YVYEGQDGKSLRAMPTMANILAYPGFWARESDTGITWQKLLHAEQEIHIHAPLPASGRV FT TGATRITGLWDKGPGKGAFLQQTRDITDAATGQLLASVVQLSLLRGDGGFGEGGSAGAP FT PAAHAMPEGAPDHVCELATPAQLALIYRLSADLNPLHADPAVAAAAGFARPILHGMALM FT GVAAHAVLRTVLDYDDTRFQGMRVRFTAPAWPGDTLRTEMWVNGKTVSLRTTAVERDVV FT VLNNSRVDLR" FT misc_feature 643764..644129 FT /note="HMMPfam hit to PF01575, MaoC like domain, score FT 4.6e-27" FT CDS 644173..644922 FT /transl_table=11 FT /locus_tag="BPP0607" FT /product="putative short chain dehydrogenase" FT /note="Similar to Bacillus subtilis 3-oxoacyl-[acyl-carrier FT protein] reductase FabG SWALL:FABG_BACSU (SWALL:P51831) FT (246 aa) fasta scores: E(): 3.9e-32, 42.62% id in 244 aa, FT and to Streptomyces coelicolor putative short chain FT oxidoreductase 2SCG61.28c SWALL:Q9K3Y7 (EMBL:AL359949) (253 FT aa) fasta scores: E(): 2.7e-38, 48.36% id in 244 aa" FT /protein_id="CAE36192.1" FT /translation="MDLGLTGKVAIVTGSARGLGAATARRLAEEGAKVVITDINAELAQ FT ETARRMQDDGLAAHCIIGDVTKAADVQRLVEETVAHFGGVHILVNNAGAPRDKYLVKMS FT EDDWDFVMAVMLKGAFLAAKAVMPHFIEQGWGRVINISSRAHLGNPTQANYSAAKAGLI FT GLAKALSKEEGRYGITCNCVAPGFMETEMVQALSTYETIKEQAVAAQPIKRVGKPDDIA FT DAVAFLASERAGFISGEVLHVTGGRYG" FT misc_feature 644326..644913 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 2.2e-48" FT misc_feature 644596..644682 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 645026..646231 FT /transl_table=11 FT /locus_tag="BPP0608" FT /product="putative thiolase" FT /note="Similar to Chromatium vinosum acetyl-CoA FT acetyltransferase PhbA SWALL:THIL_CHRVI (SWALL:P45369) (394 FT aa) fasta scores: E(): 4.9e-59, 44.75% id in 400 aa, and to FT Acinetobacter sp beta-ketothiolase PhaA SWALL:Q44305 FT (EMBL:L37761) (392 aa) fasta scores: E(): 5.2e-58, 43.28% FT id in 402 aa" FT /protein_id="CAE36193.1" FT /translation="MRRAAIVSPLRTPVGAFGGALKAVPVEELGAAVARAIVQRTGLDP FT ARIDDVVFAQSYASGETPCTGRWVALQAGFPIEVAGMQLDRRCGGGVQTVATAAMMVQT FT GAADVVMAGGVESMSNVEHYTTDMRWGKRAGSVTLHDRLDRGRERSQPESRFGRISGMI FT ETAETLAREYGISREQADLFAARSHQRAAAAQAAGHFDAEIVPISVAQRKGEPLLVGQD FT EGVRGETSAESLGRLRTIMKEGVVTAGNACQQNDAAAACLIVAEDRLEELGLEPMGWLV FT GWAAAGCDPARMGIGPVPAVSKVLARTGLGFDQMDLIELNEAFACQALACVKGWGSSMD FT ALEDRLNVNGSGISLGHPVGATGVRIMTTLLHEMQRRKARYGLETMCIGGGQGIAMIVE FT RA" FT misc_feature 645026..645826 FT /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain, FT score 2.6e-75" FT misc_feature 645839..646225 FT /note="HMMPfam hit to PF02803, Thiolase, C-terminal domain, FT score 9.6e-59" FT CDS 646241..648190 FT /transl_table=11 FT /locus_tag="BPP0609" FT /product="AMP-binding enzyme" FT /note="Similar to Escherichia coli acetyl-coenzyme A FT synthetase Acs SWALL:ACSA_ECOLI (SWALL:P27550) (652 aa) FT fasta scores: E(): 2.1e-57, 31.78% id in 626 aa, and to FT Bacillus halodurans acetyl-CoA synthetase BH1137 FT SWALL:Q9KDS4 (EMBL:AP001511) (648 aa) fasta scores: E(): FT 2.7e-94, 39.78% id in 641 aa" FT /protein_id="CAE36194.1" FT /translation="MMHTNDSSHVWQPGQRELQDSGIAHLIRTLGVATYDDLMRVSVEE FT PERYWNTVMRECAIAWDEPPTGYVDLARGPQFPSWFPGGRLNWVNTIYAWARNPATAGQ FT TAVIGEREDGSVGSLTYQELETRVREFAAGLARHGARPGDRIGLLMENGVDATVSLLAI FT VHLGALVVPLFSGFGVDAIVARLSAAEARMVIASTGFQRRTKRVDVQGALRDAWRQLPL FT LKNVVWKRADGESAQDQRDLDWQQIATAAQGQGQDPVSVTPDTPFMVIYTSGTTGKPKG FT VVHPHGSFPIKIAHDSLVHFDVHPGDVYCWPADMGWIAGTLVLGCALLRGATLVCYDGA FT PDYSDWSRMSRVVERHKVTHFGSAPTLIRGMASNETLALAGDRATVRVLITAGEGIAPE FT HFIWFQQRFGDGSAPLVNYTGGTEVSGALLSSVPIRPIPPSGFNTISPGVAVDVVDPDG FT HSVTGEVGELAVRAPFVGMTQSFWHDDARYLETYWQAIPGIWVHGDLALRTPEGYFFMM FT GRSDDTLKVAGKRLGPAEVEEVVLELHDVAEAAAIGVADAAKGQKLVVFVVPRPGVSVP FT DDALQAAVIGHVDKRLGRPFRPGRVHVVSQLPKTRSSKIMRRVIRSVYCGQPPGDLSSL FT DNPAALDEVRAAAA" FT misc_feature 646598..647893 FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 4.2e-100" FT misc_feature 647045..647080 FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 648174..649055 FT /transl_table=11 FT /locus_tag="BPP0610" FT /product="IclR family regulatory protein" FT /note="Similar to Pseudomonas putida pca regulon regulatory FT protein PcaR SWALL:PCAR_PSEPU (SWALL:Q52154) (291 aa) fasta FT scores: E(): 1.3e-09, 26.48% id in 287 aa, and to Brucella FT melitensis transcriptional regulator BMEII022 SWALL:Q8YB78 FT (EMBL:AE009735) (284 aa) fasta scores: E(): 7.5e-26, 34.35% FT id in 262 aa" FT /protein_id="CAE36195.1" FT /translation="MRPRPDAALAMSSGPPAARKPGVVQPALLNMSAWLRPEPGLTVVT FT PLVRALVLISAFSPQERWLGNGQLAQRTGLPPSTVSRIAQSLVHLGYLLHDGAERKYRL FT APAVLGLGYAAIAHSAIQGLAGERMAAFARQHKVHVCLAARDRLDLVVLECRRSLECPV FT ALPLHVGMRVGIAQSPMGWSMLAALPELERCYLLDNVERRMARDWSRLRRRVWEGMAQV FT GETGYCTSIGEWNPELGALATPVLLEGSSPFVLACIGTSQTMTRARVARELGPRLLAMR FT EALQTEFNVIGH" FT misc_feature 648477..649034 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 4.7e-05" FT CDS 649106..650287 FT /transl_table=11 FT /locus_tag="BPP0611" FT /product="CaiB/BaiF family protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein RS05729 SWALL:Q8Y047 (EMBL:AL646063) (405 aa) fasta FT scores: E(): 6.9e-37, 33% id in 400 aa, and to Thermoplasma FT volcanium L-carnitine dehydratase TVG1215416 SWALL:Q979H5 FT (EMBL:AP000995) (399 aa) fasta scores: E(): 1.5e-35, 30.02% FT id in 393 aa" FT /protein_id="CAE36196.1" FT /translation="MKVLEGIKVLDFGRFIAGPYCAALLADYGADVIRIDRVEGGEDRY FT IVPVTEGGEGAMFLQLNRNKRSMTLDLDSPQGREIVRKLVAGADVVIANMPPRTLKSLG FT LDYATLSGVNPGIILVASNAFGDAEAVRDRVGFDGVGQALSGAVYMAGTPDQPQKAMVP FT VVDFATSFACALGTMLALYERKRSGKGQEVSASLLCTGLNMASGALIEEALLGLDRQAT FT LNRASGYAPSDIFKARDGWFITQVIGQAMFKRRTRLVERPELFEDARFADDRLRGEHGE FT VLSAIMSDWCGDKTLDEALAQLEKARIPAGRVNSPRQALEDETVRAANLIQWMDYPGAP FT GKVPIFSTPVSLSRTPPEIHRRAPLNGEHTEAILAELGVDARAIADLRQRRVI" FT misc_feature 649307..649873 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.4e-45" FT CDS complement(650311..651240) FT /transl_table=11 FT /locus_tag="BPP0612" FT /product="LysR family regulatory protein" FT /note="Similar to Escherichia coli cyn operon FT transcriptional activator CynR SWALL:CYNR_ECOLI FT (SWALL:P27111) (311 aa) fasta scores: E(): 5.9e-17, 29.43% FT id in 299 aa, and to Rhizobium loti nitrogen assimilation FT control protein MLR6097 SWALL:Q98A96 (EMBL:AP003008) (316 FT aa) fasta scores: E(): 2.5e-22, 30.09% id in 309 aa" FT /protein_id="CAE36197.1" FT /translation="MDIKQLRAFVTVAETGNVTRASGLLNLVQPAVSRQLRLLEQDLGT FT ELFDRGRHGMRLTPNGKTMLEYARRILGEVARAKAEIQPTEGPVAGIVSIGLLASTSDL FT LATRIAAEVAQRYPQIRLRLTIGYAGHLREWLEAGDLDAALLYGKKDIPALHVKALLEE FT NLWVVAPPSARLTRTRAQSLERISRHPFILPAAPQGLRAVIEHAAAEAGVTLQIFAETN FT ALSVQKDLVTQGHGWSILPAASVAPDVESGRLSAAPLAGGGLKRTIVLGAASSRQATAP FT VRCVVGVLIDCVKATLDERRWPDARWLG" FT misc_feature complement(650368..650985) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 7.7e-40" FT misc_feature complement(651055..651234) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.8e-25" FT misc_feature complement(651100..651192) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 651353..652519 FT /transl_table=11 FT /locus_tag="BPP0613" FT /product="putative acyl-CoA dehydrogenase" FT /note="Similar to Salmonella typhimurium putative acyl-CoA FT dehydrogenase STM0857 SWALL:Q8ZQL7 (EMBL:AE008736) (387 aa) FT fasta scores: E(): 7.3e-117, 70.6% id in 381 aa, and to FT Pseudomonas aeruginosa probable acyl-CoA dehydrogenase FT PA0879 SWALL:Q9I566 (EMBL:AE004522) (386 aa) fasta scores: FT E(): 3.8e-116, 71.91% id in 381 aa" FT /protein_id="CAE36198.1" FT /translation="MSALSAPDQYQEIRDAVRSLCKQFPPEYHRQVDEKRGYPEEFVNA FT LTRAGWLAALIPQEYDGPGLSMAEASVIMEEINRSGGNSGACHGQMYVMNTIVFSGTEE FT QKRKYLPRIASGELRVQSMGVTEPTTGSDTTKLKTTAVKKDGRWVINGQKVWISRVQHS FT DLLILLARTTPVEQVQKRSDGLSCFIVELDKAIGNGLTVRPILNMVNHETNELFFDNLE FT LPEDALLGAEGKGLKVIFEGLNAERTLIAAECIGDGYWFLEKARDYANERKVFGRPIGQ FT NQGIQFPLAECFIELEAANLMRWQACSKIDARQNAGVEANMAKYLAAKASWEAANACLQ FT THGGFGFACEYDVEWKFRETRLYQVAPISTNMILGYVAEHVLQLPRSY" FT misc_feature 651368..651718 FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal domain, score 8e-08" FT misc_feature 651722..652039 FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 8.1e-18" FT misc_feature 652049..652498 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.1e-55" FT CDS join(652538..653182,653182..653250) FT /pseudo FT /transl_table=11 FT /gene="etfB" FT /gene_synonym="etfS" FT /locus_tag="BPP0614" FT /product="electron transfer flavoprotein beta-subunit FT (pseudogene)" FT /note="Similar to Bradyrhizobium japonicum electron FT transfer flavoprotein beta-subunit EtfB or EtfS FT SWALL:ETFB_BRAJA (SWALL:P53575) (249 aa) fasta scores: E(): FT 1e-49, 66.26% id in 249 aa, and to Ralstonia solanacearum FT probable electron transfer flavoprotein RSC0923 or RS04491 FT SWALL:Q8Y0X0 (EMBL:AL646061) (249 aa) fasta scores: E(): FT 2.2e-62, 79.11% id in 249 aa. CDS contains a deletion and FT frameshift after codon 215" FT /db_xref="PSEUDO:CAE36199.1" FT misc_feature 652538..653179 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01012, Electron transfer FT flavoprotein beta subunit, score 3.4e-90" FT misc_feature 653000..653062 FT /note="PS01065 Electron transfer flavoprotein beta-subunit FT signature." FT variation 653174..653176 FT /note="35 bp deletion in parapertussis relative to FT bronchiseptica" FT misc_feature 653254..654087 FT /note="HMMPfam hit to PF00766, Electron transfer FT flavoprotein alpha subunit, score 3.9e-117" FT CDS 653260..654198 FT /transl_table=11 FT /gene="etfA" FT /gene_synonym="etfL" FT /locus_tag="BPP0615" FT /product="electron transfer flavoprotein alpha-subunit" FT /note="Similar to Bradyrhizobium japonicum electron FT transfer flavoprotein alpha-subunit EftA or EtfL FT SWALL:ETFA_BRAJA (SWALL:P53573) (314 aa) fasta scores: E(): FT 2.5e-62, 67.94% id in 312 aa, and to Ralstonia solanacearum FT probable electron transfer flavoprotein EftA or Rsc0924 or FT Rs04490 SWALL:Q8Y0W9 (EMBL:AL646061) (311 aa) fasta scores: FT E(): 4.7e-72, 75.64% id in 312 aa" FT /protein_id="CAE36200.1" FT /translation="MTVLVIAEHDHASIKPATLNTVTAALACGADVHVLVAGDNAAGAA FT QAAAQIAGVAKVVHADGASLKDGLAESLAAQVLAAQADGNYSHILFPATASGKNVAPRV FT AARLDVAQISDITRVVGADTFERPIYAGNAIATVQSADAVKVVTVRTTGFDAAAPTGGS FT AAVETAAAVPDGGKSRFVGREVTKSDRPELTAAKIIVSGGRALGSAEKFADVITPLADK FT LGAAIGASRAAVDAGYAANDLQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAI FT NKDAEAPIFAVADYGLEADLFQAVPELIGAL" FT misc_feature 653770..653793 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 654025..654105 FT /note="PS00696 Electron transfer flavoprotein alpha-subunit FT signature." FT CDS 654262..655110 FT /transl_table=11 FT /locus_tag="BPP0616" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0878 SWALL:Q9I567 (EMBL:AE004522) (275 aa) fasta FT scores: E(): 9.1e-41, 45.16% id in 279 aa, and to Brucella FT melitensis hypothetical cytosolic protein Bmeii1075 FT SWALL:Q8YB26 (EMBL:AE009739) (276 aa) fasta scores: E(): FT 1.4e-40, 47.79% id in 272 aa" FT /protein_id="CAE36201.1" FT /translation="MHPDNPPSYDAWIGRTETSADQIGPTPIRLLRGTLDDEHASALPA FT HLPPLWHWLYFLPGERQSSIGPDGHPRRGGFLPPIALPRRMWAGGRLRFLRPLAVGAAV FT TRLSTIRHVQVKLGRSGQLVFVTVLHEIGDDAGVAIREEQDIVYRDAPAAGAPAPQPTP FT APADEQYSRVITPDPVLLMRFSALTFNGHRIHYDRPYAMQEEGYPGLVVHGPLIATLLM FT EELRRNHPGKTVRGFEFKAVSPLFDTAAFSVNGKVAGNTAQLWARGPQGQLAMRASAEI FT E" FT CDS complement(655222..656178) FT /transl_table=11 FT /locus_tag="BPP0617" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Burkholderia cepacia DntR SWALL:Q8VUD7 FT (EMBL:AF169302) (301 aa) fasta scores: E(): 6.9e-24, 32.42% FT id in 293 aa, and to Pseudomonas stutzeri regulatory FT protein NahR SWALL:Q9ZI62 (EMBL:AF039534) (300 aa) fasta FT scores: E(): 7.9e-24, 32.42% id in 293 aa" FT /protein_id="CAE36202.1" FT /translation="MTLMSAPRPNKPARLHRVDPNLLVSLLAIFDTGNVSRAAEALGIT FT QPAVSQNLRKLREHFGDPLFVRGGNILQPTPLMLGIRPVIARLIQDLDTLSCPAGSFDP FT ANADREFSLCMSDSAEFAVIPFVAAEFGRRAPGCRIRGMRIHHSQLLAMLEKGEADVAL FT GSLAGAAPSLRQQRLTDHGMVCLVSGQGRWADTPPTLDDYAQGRHVAVRRVSDNLAPVS FT ERLRLNGIERNIMITVSSDFVAAATVVQTDALCTVARAVARQLAAFLPVRIQPLPFDVG FT TLATRMIWHERYQHDASHIWLRKLVRTAYRNWDAGGP" FT misc_feature complement(655246..655869) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 7.9e-18" FT misc_feature complement(655942..656121) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.8e-19" FT misc_feature complement(655987..656079) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 656289..657713 FT /transl_table=11 FT /locus_tag="BPP0618" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium smegmatis hypothetical 50.9 FT kDa protein SWALL:Q938D1 (EMBL:AY054120) (477 aa) fasta FT scores: E(): 1.3e-12, 24.31% id in 473 aa, and to FT Aspergillus terreus hypothetical 52.8 kDa protein FT SWALL:Q9Y7D9 (EMBL:AF141925) (490 aa) fasta scores: E(): FT 4.9e-12, 25.4% id in 492 aa" FT /protein_id="CAE36203.1" FT /translation="MSTIIERLADFSVNTAFEDIPAHVVEESKRLILDSIGCAFAAVDH FT PKGRIGVEYSRSMAGNGGATIIGTPHQASALGAAMANGELINALDMDAVVPPGHVTPYV FT LPGALATAELANASSRDLIRAVAVSHEMSWRIGKAMDYLRDARNGQLDTPKVYGFNSTI FT FGATAAIAMLQGQSASTLAHALSIAGYISPVQSMMAFFHHAPSTTIKYQMAAALIQAAM FT MAAHMPVLGHRGNVQLLDDAENGYAKFIGTRRWDTDRIVSDLGAHWGFTTEQLYKPYPH FT CRILHGPLDCLIEIVERHDLRPEEIDGIHLFVEGFVQKPTWQTRDIQHVHDGQFSIAHG FT MAIAAHRLKPGRDWQDPKHVFSPSVLGLMEKVRYEVHPDYLQQLSAHASARPSRVEVEA FT RGQRFVAERLYPKGSPAPDPANLMSTDELIAKFHHNAEGVVPRDGAEAIVEAVMRLDDG FT RGVASWTPLLAGAPGA" FT CDS 657939..658910 FT /transl_table=11 FT /locus_tag="BPP0619" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 6.7e-33, 34.16% id in 322 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 3.6e-29, 34.75% FT id in 305 aa" FT /protein_id="CAE36204.1" FT /translation="MFTRRHFLKTWAALPVALQSQHVLARQLSDKPIRLLVAASSGTTV FT DTVARFLAPPLAGLVGAPVVVENRPGAGGALGSAAVAKAPADGHTLLMTGITHFSALYS FT GEAAATYDPVRDFKGVARACSAALALVVPANSPYRTFGDLLAAMKANPEGIDYGSGGVG FT STSHLCTAIMNDLTGTRARHIPYKGNTQAVTDTAAGIVAFTCQGAAGVLPLIQAGRLRA FT LLVTSPRRWDALPDVPTGVESGIPGFEVSSWMAAFAPAQTPDPIVVQLSDAIARIVRSS FT EFKDFCANQSMYVDLMEYREFQASIPAEDKRWQRVAELIKRS" FT misc_feature 657939..658013 FT /note="Signal peptide predicted for BPP0619 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.987) with cleavage site FT probability 0.986 between residues 25 and 26" FT misc_feature 658080..658904 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.2e-83" FT CDS 658973..659962 FT /transl_table=11 FT /locus_tag="BPP0620" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 2.2e-29, 31.86% id in 317 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 2.7e-28, 33.63% FT id in 330 aa" FT /protein_id="CAE36205.1" FT /translation="MNRNLRSRALVRCALGAMLALLPPWAAAAQDYPDQARPVRIIVPS FT GAGSIVDLLARAQAKAMSEVAGINVVVENKPGAETIIGVQALMAAPPDGYTMLVTSSSS FT QSINPVMLPNLPYNPLEDYIPLEAISTSPLYMNLGASTRFGSAGDFIAAARASPGKYTC FT ASATTATRLACAQLEGTTGIEMLNVPYRTSASALTAVASGEADVFFIDIGSARAFWQAG FT KMRPVAVTSSARAKALPQVPTLREQGAANYEFVAWFAAYFPARTPPQTVAKMREILQAA FT YATPGFVEALATYGHEPLQLAGADLLELNRKEIAKWSTLVKEGGIQVQ" FT misc_feature 658973..659059 FT /note="Signal peptide predicted for BPP0620 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.892 between residues 29 and 30" FT misc_feature 659132..659950 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 5.2e-57" FT CDS 660113..660724 FT /transl_table=11 FT /locus_tag="BPP0621" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium tuberculosis hypothetical FT 22.9 kDa protein RV3557c or Mtcy06g11.04c or Mt3661 FT SWALL:P96839 (EMBL:Z92774) (200 aa) fasta scores: E(): FT 2.3e-09, 29.38% id in 194 aa, and to Streptomyces FT coelicolor putative TetR transcriptional regulator FT Sci30a.12C SWALL:Q9S261 (EMBL:AL096811) (251 aa) fasta FT scores: E(): 4.7e-08, 25.12% id in 199 aa" FT /protein_id="CAE36206.1" FT /translation="MARRQTSSNGAGETRENLLRLAARIFSAQGYSGTTMRSIAQQAGI FT ETASIYYHFPSKEDLVDEVMEIGATAIIQHMTERIEALGDGATAEERFRAAVLGQMAGM FT VKHGEYTLASSSLIEQLPEKVRERQSKRRESYQKLWAGLLEDLRAEGRLRSDVDLHLAR FT MFILGSVQSIRYWFNPRKGSLEKVAAQLCDLFFEGVGQRG" FT misc_feature 660164..660304 FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 2e-18" FT misc_feature 660200..660292 FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT CDS complement(660777..662198) FT /transl_table=11 FT /locus_tag="BPP0622" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0030" FT /protein_id="CAE36207.1" FT /translation="MNATPSPSNPPGNCPPLEQAVVRFIQDLKYEHIDAAALAGVNRLM FT RDQLALQVGISAMPWSRQLLDYALTQQRPGASRVSASTLKMSAADAAFVNGSYGHGFEY FT DDAHGPSYSHPGSCVIPAALAIGEELGSSLQDVITAMVAGYEVYTRIGLLAAPDLLRRG FT YHPHCTLSNFGAAAVAAKLRGFDAETTLHALAIALSHTSGTTEYSSTGGSIKRIHAGLG FT TRNGMMAADMARAGITGPRAFLSGNKGFFKTFLQRLAGEAPQQRFAPGEPFQVATVWLK FT AYCACYCTHAYIDALRPYAERRGEIADIHLKITPHFNVVVGTANACAYAPTNIEHVQFS FT LPIQAALAVQGLGNGYRIHRDYLDGRVDMAPVIAMARGIRITEDPGLETRHPGKFVADV FT TVTFRDGSAEHVFVADPIGTDTNPMPEHEQDAKFMELTADALGQARARALLAALRKMDP FT AMKAADLMALCEPAP" FT CDS complement(662240..663097) FT /transl_table=11 FT /locus_tag="BPP0623" FT /product="putative enoyl-CoA hydratase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0029" FT /protein_id="CAE36208.1" FT /translation="MRRGAINTHQRYGAVSNMRYEDFEFLLCEPQDDGVMLVTLNRPDA FT MNATNDRMHWELTRIWGVVNDDPGVKAVVVTGAGERAFSAGGDLSVVEAMSNSHETTMR FT VMKEASDIVYNMLACDKPIISAINGTAVGAGLAVALLADVSVMAEDAKLTDGHARLGVS FT AGDHAAIIWPILCGMSKAKYYLMTTDFVDGKEAERIGLVTFCAPRAEVLPKSLAIAAKL FT ARGSQTAIRATKKSLNNWMRTAGPAFDNSLALEMLCFLGPDVKEGLAALRDKRAPDFPS FT ARLP" FT misc_feature complement(662477..662992) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 7.1e-32" FT misc_feature complement(662666..662728) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 663260..664021 FT /transl_table=11 FT /locus_tag="BPP0624" FT /product="nitroreductase family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3845" FT /protein_id="CAE36209.1" FT /translation="MNAETPQNLMLASLQAPPVRTVVADPQSVHAAIESRFCCREFLAD FT PVERETLERILRVASWAPSGSNNQPWKVYVVQGASRAALSQKVRAAQDALSQDPALADN FT YREPYQYYPVEWVSPYIERRCACGFGLYGVLNIARGDRVRMNEQLLRNFDFFGAPVGIF FT FTNDEILAEGALVDTAMFVQNVMLAARAEGLHTCVQAAWNRFSSVVLPHIGAQGERLVC FT ALALGHADVDAPVNTFRPDRADPASFTAWLD" FT misc_feature 663341..663901 FT /note="HMMPfam hit to PF00881, Nitroreductase family, score FT 0.00055" FT CDS complement(664101..664787) FT /transl_table=11 FT /locus_tag="BPP0625" FT /product="TetR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3846" FT /protein_id="CAE36210.1" FT /translation="MPMPDTTSSTEHIESQASEKGRSRGQRGEGKASPETRDRLLRAAA FT HVFRHKGYVAATLAEIGQLADLRPATILYHFASKEALLEEVMTVGLGAPQQEVQRRLAS FT APRDATAADRLRIAIIGHLSALLMHNDFTAAGVINFHLAPPALRKRHHEKRSAYGDVWR FT ELLRQAKDEGYLAGDVDLTVLRLFMIGGLNWSHEWYDPKGGRSIEAIGSDIARIVLGQT FT DTPLPA" FT misc_feature complement(664530..664670) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 8.5e-13" FT CDS 665084..665968 FT /transl_table=11 FT /locus_tag="BPP0626" FT /product="putative hydroxymethylglutaryl-CoA lyase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3847" FT /protein_id="CAE36211.1" FT /translation="MDALTATGLKKIQVASFVNPRMVPAMADAAELFGAIQKKSGVRHT FT ALWLNAKGIEKAAATAGVDLDGKMMLYASEAFSWSNNGCSAKDQQQRQLEWLAIYDRLN FT LPLEAVYVATAFGCQMQGEVPLQAVLDIVDFVRDLCAEQSRPLPSIFLGDTVGWGNPEE FT IKRRVNAVRERAPGMRVGLHLHDTRGMGAANFYAALQEGVDLFDSSIGGLGGCPFCNHA FT NMQAAGNICTEDMVQLCHELGIETGIDLDRLIGASRLAEEIIGRTLAGKVMHSDSLDAQ FT RAALRQAQAGEPA" FT misc_feature 665087..665893 FT /note="HMMPfam hit to PF00682, HMGL-like, score 6e-18" FT CDS 665965..666744 FT /transl_table=11 FT /locus_tag="BPP0627" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3848" FT /protein_id="CAE36212.1" FT /translation="MSDALLFSVDDGIATLTINRPAQRNAINIEVNSRLYEAWETIDSR FT PDIRVAILTSADCGTFCAGMDLKEAARVREETGEDVVRSFKDPFQARMRRVKVPIVAAM FT TGHLMAGGMMLSLNCDLRVGLAGTKAGITESKVGRGSPWGVPLVWMLPQPVLMELMLTG FT NLMPIERLRDLGFVNDLGETPDAVRAKALALARAIRDNAPLSVACAKQSILAAMSVGCD FT AGLEMAWRIHRPAYESEDAEEGPRAFAEGRKPVWLGR" FT misc_feature 666004..666510 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 3e-16" FT misc_feature 666265..666327 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 666802..668064 FT /transl_table=11 FT /locus_tag="BPP0628" FT /product="CAIB/BAIF family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3849" FT /protein_id="CAE36213.1" FT /translation="MFTHLVDFMSISSHRLLEGIRVLDMTVALAGPYASMLLGGLGAEV FT IRVEAPGGSDLGRSNPPFVGPGGVNFGQQGSDDVSLTLLNRARNKKSITLNVKDPEGRA FT LFARLLRESDVFIENLSEGASERLGVDYARVREINDRIIYASIKAFGEPSKYQNLKGMD FT ILVQALSGLMAVTGEASGPPMRCGVPVADLLAPLYMVNGILAALIYRGRTGKGQKIQVS FT MLDCLSSWVAEEHFDVLAQAGFRMRTGNNHERLVPFGTYECVDGHIAIAAVHPDWFASL FT LDAMGRADLQRDPRFADRGTRMRHAADLAALVSEWTRDKTVAFVEQALVQERGVPAARV FT RTPLEMLDDPDLHRSGAITDLQTPDGGTVRGMGLPIGFSECHAQFDVPAQALGQANASV FT YADILGLSDAEIRRLEEKGVI" FT misc_feature 667078..667647 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.3e-57" FT CDS 668163..669134 FT /transl_table=11 FT /locus_tag="BPP0629" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3850" FT /protein_id="CAE36214.1" FT /translation="MHRKVVALIAASLACLAGAASQAQTKPYPSEPFTLIVPFGAGGGT FT DLLARHIGKAITEKTGLAAIVENKAGANGIIGAQHAKKATANGYNILLTTSTTHGANPS FT LYKSLPYDPVADFDPIGLVGVGGVVMVVKADSRINNVQDFIAAAKASPRPMTFGSGNSS FT SQAGGELLKSYVGVDLMNVPYKSVPAALTDLVGGQVDVVFADSIAAQPMITGGQVKPIG FT VSTRTRIPGLENVPTIAEQGVQGYEFLEWIAAYTPKGVPEDRRKDLNAMFNDIVKEQAV FT ADFLARNGWIVQPGSMAEMDNFQKSEIAKWRKIVETTGMTVQ" FT misc_feature 668163..668231 FT /note="Signal peptide predicted for BPP0629 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.872 between residues 22 and 23" FT misc_feature 668175..668207 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 668304..669122 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.1e-63" FT CDS 669143..670315 FT /transl_table=11 FT /locus_tag="BPP0630" FT /product="iron-containing alcohol dehydrogenase" FT /note="Weakly similar to Escherichia coli lactaldehyde FT reductase FucO SWALL:FUCO_ECOLI (SWALL:P11549) (383 aa) FT fasta scores: E(): 1.6e-17, 27.9% id in 387 aa, and to FT Salmonella typhi 1,2-propanediol oxidoreductase STY3112 FT SWALL:Q8Z432 (EMBL:AL627277) (382 aa) fasta scores: E(): FT 2.9e-20, 29.84% id in 392 aa" FT /protein_id="CAE36215.1" FT /translation="MPSYARYHTPEMRAFEGEGCFEALPAELDRLGCASAVIVCGRSMA FT RDERLLALIRRPLGSRLDGICADVRPHSPLSAVQAVARYLRSSGTQCVIAVGGGSAIVT FT ARAASILRAEDGDVASLCTQWLADGSMRSPRLAADKMPQIVVPSTPTTAIPKAGSAMLD FT EASGARMALFDPKTRARSVFLHPAFTASAPLALLHSAAFNSLALAVEGLLSRTAHPLSD FT AALVHAAGGLYRSLVQGGALASPAERRDLIWYAIQAGQGSDHTGAGMCIPIGHAISSMF FT DIDNGIANAIVLPHVLRFNAPSARRGIELLASALRVDGGGTDAGVAAVARALTQLAAAT FT AYPSRLRDAGVARERLPDIAAVAMRDWYLRNNPVRLEHPGQIEAVLRDAW" FT misc_feature 669170..670288 FT /note="HMMPfam hit to PF00465, Iron-containing alcohol FT dehydrogenase, score 2.1e-12" FT CDS 670338..671096 FT /transl_table=11 FT /locus_tag="BPP0631" FT /product="enoyl-CoA hydratase/isomerase family protein" FT /note="Similar to Escherichia coli probable enoyl-CoA FT hydratase PaaG SWALL:PAAG_ECOLI (SWALL:P77467) (262 aa) FT fasta scores: E(): 2.6e-31, 39.45% id in 256 aa, and to FT Ralstonia solanacearum probable enoyl-CoA hydratase protein FT RS00229 SWALL:Q8XVF8 (EMBL:AL646072) (262 aa) fasta scores: FT E(): 5e-30, 39.34% id in 244 aa" FT /protein_id="CAE36216.1" FT /translation="MMDFDNLDVSVEDGICQVTLNRPEKFNAMSLALRKQMTACLQRIA FT GDTAIRVVVLTGAGRAFCAGGDISEFECSSEELNDLITRVSHQWFRAFANLPQPVIAAV FT NGPAAGAGCSLALGSDLIYASESAYFTQSFSAIGLAPDQGSAYHLPRRVGLARAKEMCF FT FADRVSAPQALEWGMINGVFSADALMDAVRGKARALSLKSPQALQMIKRMLNRSFESTL FT EATLDMEAAAQSFLFSTEGTRQAIGAFLKK" FT misc_feature 670383..670889 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 4.2e-49" FT misc_feature 670638..670700 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(671137..672618) FT /transl_table=11 FT /locus_tag="BPP0632" FT /product="putative amidase" FT /note="Similar to Pseudomonas sp. FT 6-aminohexanoate-cyclic-dimer hydrolase NylA FT SWALL:NYLA_PSES8 (SWALL:P13398) (492 aa) fasta scores: E(): FT 6.3e-40, 33.26% id in 481 aa, and to Flavobacterium sp. FT 6-aminohexanoate-cyclic-dimer hydrolase NylA FT SWALL:NYLA_FLASK (SWALL:P13397) (492 aa) fasta scores: E(): FT 4.8e-39, 33.05% id in 481 aa" FT /protein_id="CAE36217.1" FT /translation="MHASHIIDYLKLDAVELSEHIARGDMTAEHAMRCALELAGRYDEP FT YGVLCHAHPEAALESARQGRPGTRFAGVPFLLKDSGLPSTRLPSSVGSRLFSDTRYAQD FT STLASRLEQAGLIPFARTRVSELCMAPTSEAVRYGGPTRNPWAPERSAGGSSGGSAVAV FT ALGIVPMAHGSDGGGSVRIPAACCGVFGFKPSRGLLPVGPLKGESLGGMATDGVLSQTV FT RDSAALLDAVSGYEPGSPYASPVCAKPLSASVVPAIGRARLRVGVWREAWNGVPIAQPC FT LQAVQQAADLCRELGHEVVDLPLPNFNYDQFVDAHATMLATTIARLVDARLRQTGQSLA FT DGDLEPAIADGYTLGKRIDAITYAGAVDCFHGVGRAIERAMASCDLILSPALTTLPVKL FT STLTPVGGFLDFRRRVSEYTTFLAIINASGQPAASVPLHWTADGLPVAVQLIGHFGQDD FT LVMRLAAEFERAAPWHGRLARFRGDAYTQALERAA" FT misc_feature complement(671236..672531) FT /note="HMMPfam hit to PF01425, Amidase, score 2.1e-74" FT misc_feature complement(672067..672162) FT /note="PS00571 Amidases signature." FT CDS complement(672622..673455) FT /transl_table=11 FT /locus_tag="BPP0633" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti N-formylglutamate FT amidohydrolase MLR8322 SWALL:Q983H9 (EMBL:AP003013) (273 FT aa) fasta scores: E(): 6.4e-61, 56.82% id in 271 aa, and to FT Caulobacter crescentus formiminoglutamase CC0958 FT SWALL:Q9A9M0 (EMBL:AE005772) (271 aa) fasta scores: E(): FT 9.7e-59, 56.39% id in 266 aa" FT /protein_id="CAE36218.1" FT /translation="MAPPWLTIHEGGSPLVCSIPHAGSWIPDELRHDFVSDWDAVRDCD FT WWVDRLYDFARDLDATLVCTKVSRSVIDVNRPADGRSLYPGQATTGLCPTTNFDGAPLY FT RVGREPDDAAIARRKAQYHQPFHAALASQIARLRERHCAVVLYDCHAIRSRIPRLFDGQ FT LPARNIGTNDGASCSPELQAIVADACRASGRDYVVNGRFKGGAITRQYGQPDAGVHAIQ FT MELACRAYMHEPADAPSEENWPSPWSADASAALRATLQTLLQALRDWAVRQKPNR" FT CDS complement(673473..673955) FT /transl_table=11 FT /locus_tag="BPP0634" FT /product="hypothetical protein" FT /note="No significant database matches" FT /protein_id="CAE36219.1" FT /translation="MPSPTIRIEGEHAMAHDPIEVWKKMPMKVWPERYWLIDVPAEHGE FT AVARALAHSQSRYVAVIRDQTGFSLVVDEQTWEGHGSAQAERQKFGPLKVISTDGPLPF FT DVTGFIKAALEPVNTLGMKAAPQCGAAADHFFCAEAEVDQVAAVFERFTAGFGAAR" FT CDS complement(673955..675412) FT /transl_table=11 FT /locus_tag="BPP0635" FT /product="putative aldehyde dehydrogenase" FT /note="Similar to Bacillus stearothermophilus thermostable FT aldehyde dehydrogenase AldHT SWALL:DHAL_BACST FT (SWALL:P42329) (488 aa) fasta scores: E(): 8.9e-46, 33.19% FT id in 476 aa, and to Anabaena sp. aldehyde dehydrogenase FT ALR3771 SWALL:Q8YQP9 (EMBL:AP003594) (498 aa) fasta scores: FT E(): 8.6e-49, 36.68% id in 477 aa" FT /protein_id="CAE36220.1" FT /translation="MTSSPDIGAYAYIGGRWAQTPAARTFRTALPHDTRQSGREFGCAT FT PADAEAAVARATAAAAPWAAVPALQRAEPLRKAAALLLERLDELTRLLALEAGKPLQEA FT RGEVSAAAGFLHAYAGWPAWGGQGAVKRNGALRIVQEKFPRGVAAIITPWNYPLSNPCQ FT KIGAALIGGNPVIWRPSVSTPAVSLALIEIMHQAGFPDGVFNALIEDGDAVSRALVASE FT AVAAVSFTGSTRVGLQVAAAAAGRGAAVQCEMGGKNAAVVMPDADLDLAAERIAFGAFG FT FAGQKCTAVSRVLVHRHVADAFLKRLLDIVRDLRPGLPHQEESCLAPLISARQHDLLVD FT AIAQARERGARLIEGGAPIEQAPYAHGNYLSPALIQVHDLDDPLWTDEYFGPVLALRVC FT DDLDQAIAEVNATRYGLGAALFSHDARAIGRFTDQVQAGVVKINDVPPGLYPHVSTGGW FT KASGLGPNELSEDGVDFFLHKKSVYLA" FT misc_feature complement(673961..675367) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 3.6e-128" FT misc_feature complement(674540..674575) FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS complement(675420..676028) FT /transl_table=11 FT /locus_tag="BPP0636" FT /product="NADPH-dependent FMN reductase" FT /note="Similar to Escherichia coli NAD(P)H-dependent FMN FT reductase SsuE SWALL:SSUE_ECOLI (SWALL:P80644) (191 aa) FT fasta scores: E(): 4.4e-18, 37.36% id in 182 aa, and to FT EDTA-degrading bacterium BNC1 NADH-dependent FMN reductase FT EmoB SWALL:Q9F9T2 (EMBL:AF176664) (197 aa) fasta scores: FT E(): 2.5e-33, 52.85% id in 193 aa" FT /protein_id="CAE36221.1" FT /translation="MIDARIVAISASPSPTSKTALFVDHVLAQLGPRGQQARHIRVRDI FT DPRALLAGDFGNAALREAAALIEQADAVIVATPVFKASYSGLLKAFLDVLPQFALAGKS FT VLPLATGGSVAHVLSVDYALRPVLQSMGARHVIQGFFLAEGDVLAAPAPFRIHETADEK FT LAEVLHHFRCVLDAPVADTLLGHPRPNRSPGTAAQFGCA" FT misc_feature complement(675522..676019) FT /note="HMMPfam hit to PF03358, NADPH-dependent FMN FT reductase, score 6.8e-11" FT CDS complement(676036..676821) FT /transl_table=11 FT /locus_tag="BPP0637" FT /product="putative transport system permease protein" FT /note="Similar to Escherichia coli putative aliphatic FT sulfonates transport permease protein SsuC SWALL:SSUC_ECOLI FT (SWALL:P75851) (263 aa) fasta scores: E(): 3.5e-21, 30.99% FT id in 242 aa, and to Agrobacterium tumefaciens ABC FT transporter, membrane spanning protein AGR_L_128GM FT SWALL:AAL45391 (EMBL:AE009387) (267 aa) fasta scores: E(): FT 1.3e-29, 39.83% id in 241 aa" FT /protein_id="CAE36222.1" FT /translation="MANRFSNVLLPLVTLVLILGLWDISVRWLGMPAYLLPPPLDVFRA FT LWHGYSTGLLWPHLLTTTAETIGGFVLGCSVAVVVGGLVAEFRLLERMVYPYVVALQSM FT PKVALAPLLIVWFGFGLMSKVVLVALICFFPMFVNVVTGLRGARQELIDLYTAFSASRF FT QIFRDIKLPSALPSIFAGLQIALVLSLLGAVVGEFVASQKGLGSLIQAASLNFDLPIMF FT ACILTLAFMGAMATLVVNWAQRRLLFWHETTAGQDRKAR" FT misc_feature complement(join(676099..676164,676225..676290, FT 676381..676446,676462..676527,676567..676632, FT 676735..676800)) FT /note="6 probable transmembrane helices predicted for FT BPP0637 by TMHMM2.0 at aa 7-29, 63-85, 98-120, 125-147, FT 177-199 and 219-241" FT misc_feature complement(676180..676395) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.004" FT CDS complement(676837..677652) FT /transl_table=11 FT /locus_tag="BPP0638" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Methanococcus jannaschii hypothetical ABC FT transporter ATP-binding protein MJ0412 mj0412 FT SWALL:Y412_METJA (SWALL:Q57855) (267 aa) fasta scores: E(): FT 1.2e-37, 49.77% id in 225 aa, and to Rhizobium loti FT ATP-binding protein of ABC transporter MLL1253 SWALL:Q98KZ4 FT (EMBL:AP002997) (267 aa) fasta scores: E(): 4.6e-37, 45.94% FT id in 259 aa" FT /protein_id="CAE36223.1" FT /translation="MTEQSGGPSVPQLQIDALSVTYETRRGSLLAVDNMTMSVGRKEFV FT AVLGPSGCGKSTLLKIVSGLLRPSGGQALLDGSRIEGPRRDVGIVFQQPVLLPWKTVVE FT NVLVPIRALRLNENEHRGIALDLLKLVGLEKFADHYPRELSGGMQQRVGIARGLVHNPR FT LLLMDEPFAALDAMTREQMSEELQSIWMETDKAVLFITHSIHEAVFLADRVIVLSERPA FT KVIDDVVIDLPRPRQSNIASNPRFGELCAHLKSHFTTAANRTESPVANH" FT misc_feature complement(676993..677529) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 5.8e-59" FT misc_feature complement(677179..677223) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(677485..677508) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(677680..678756) FT /transl_table=11 FT /locus_tag="BPP0639" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein AGR_L_129GM SWALL:AAL45390 (EMBL:AE009387) (329 aa) FT fasta scores: E(): 2.1e-06, 23.32% id in 343 aa, and to FT Ralstonia solanacearum hypothetical signal peptide protein FT RS05672 SWALL:Q8XU03 (EMBL:AL646075) (328 aa) fasta scores: FT E(): 1.4e-06, 22.05% id in 340 aa" FT /protein_id="CAE36224.1" FT /translation="MKASKLFIAAGVAAALAGAAPAAASAADKFVFAWPSAINSGVAPL FT SYAKKLGYWQDERIDLTVQVLTGSGVIVPQLLAGNIQGAYSSLETLVVARQPGKPDYPI FT LFPYNYLRNSIWEFAVLKDSPIQSFADMKDATIGVLGLTSGNIFMSRAILASQGVPAGD FT VKFLAVGTGAAAFDALKTRQVQVLNLFDTAHVRVEQNGIPIRRVPLPAAYQGLSSHGIS FT VTRKLYDQNPDLIARFGRALTKGTVACQANLESCIRAYWDDYPAMKPRPDQEQATLERE FT KEVLKVRMANLNYFRDGQPRQYGAFSQEDWTMLIEALKLGNEVTKTDIPLDTLYSNKLV FT GEYNKFDADAVARQAREH" FT misc_feature complement(678679..678756) FT /note="Signal peptide predicted for BPP0639 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.621 between residues 26 and 27" FT CDS complement(678788..679894) FT /transl_table=11 FT /locus_tag="BPP0640" FT /product="luciferase-like monooxygenase" FT /note="Similar to Photorhabdus luminescens alkanal FT monooxygenase alpha chain LuxA SWALL:LXA1_PHOLU FT (SWALL:P19839) (360 aa) fasta scores: E(): 1.4e-08, 22% id FT in 359 aa, and to Rhizobium sp. hypothetical protein Y4VJ FT SWALL:Y4VJ_RHISN (SWALL:Q53218) (351 aa) fasta scores: E(): FT 1.8e-10, 24.56% id in 346 aa" FT /protein_id="CAE36225.1" FT /translation="MKVILFHEAICPAGTTWAQRMKEVVDEAVHAEACGFDGYAMSEQH FT FASGEAITSAPEIVLPYVAARTTKMRLRIASVNLLPYNHPIRIVEQMATLDLLSGGRAE FT LGGARSNNPYTLDAFGVDAKLTREYRDEFLAIIGKGFTQEKLEHQSPYYNIPPRRMSPW FT PVGRRPVPVHLSATSLESHEEAGRMGVGAMSGLSILGWEYAQACIDAYRKGAENAQCVA FT GSITKRQALFSVGVNCHADRATALKQTEENTLRFVEVIMDWMTKLAKRSEGYEYFAQIE FT RIRANMDNLQYLIDNAPYIMAGTPDDLIERCRRLHEMGIDDLIWRIDGMGHETNKKALE FT LIGKEVLPVVQSWPEHEYSTPSSTWNQS" FT misc_feature complement(678845..679894) FT /note="HMMPfam hit to PF00296, Luciferase-like FT monooxygenase, score 5.3e-15" FT CDS 680140..680967 FT /transl_table=11 FT /locus_tag="BPP0641" FT /product="IclR family transcriptional regulator" FT /note="Similar to Escherichia coli negative regulator of FT allantoin and glyoxylate utilization operons AllR or GlxA3 FT SWALL:ALLR_ECOLI (SWALL:P77734) (271 aa) fasta scores: E(): FT 3.6e-14, 25.94% id in 266 aa, and to Rhizobium meliloti FT putative acetate operon repressor IclR protein RB1389 or FT SMB20682 SWALL:Q92TV6 (EMBL:AL603646) (273 aa) fasta FT scores: E(): 8.2e-17, 26.05% id in 261 aa" FT /protein_id="CAE36226.1" FT /translation="MAADGSKTRKEEGGAESGGSQVMTKGLRVLSHVAHCGGEIGVREL FT ARDVGLPVAVVHRLVSSLSELNYLEKNPESGKYRIGYEAFEVGRTYLRSARIETCAPPV FT LRNVVDAHRLNAFLGVMRDLSVIYLITIQDYGHYDIRIAPGSEVPLATTAMGKVLLADL FT ADDEILEKLGQYAEKRFSAFDISRRDTVIEEIVQIRQQGYAVSEDGSFRGTVSVAAPVY FT NFTGRVIAAVSVGRPTQISSGPTVESMIECAVEAAGRISACLGAQIANQRRGG" FT misc_feature 680371..680928 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 8.2e-23" FT CDS 680995..681699 FT /transl_table=11 FT /locus_tag="BPP0642" FT /product="probable regulator" FT /note="Similar to Clostridium acetobutylicum Crp Cap0082 FT SWALL:Q97TL8 (EMBL:AE001438) (188 aa) fasta scores: E(): FT 9.8e-11, 27.32% id in 183 aa, and to Corynebacterium FT glutamicum probable transcription regulator SWALL:Q93PX6 FT (EMBL:AF293334) (227 aa) fasta scores: E(): 1.8e-10, 31.84% FT id in 201 aa" FT /protein_id="CAE36227.1" FT /translation="MARRPARLHAGRAVAIDVNYSSWDTSRKFGAGWLLRTDLGRVRAF FT AEGQALYRQGDVHDSFFLVRSGFLHTVVHGANGGVLLLEIFGPDAIFGEASAFVDEPRY FT VTARAVTPAVVTEYRVSELLPVLAGEPGLAVSLIQLLGIKHRILIGKLLRATSASPRER FT LEGLLGRIAAGSEQTRALRLTHEQLARMTGLSRVTVTRALKAMAEEGLVDTRGKGVEIR FT DAERLRARLGPF" FT misc_feature 681109..681390 FT /note="HMMPfam hit to PF00027, Cyclic nucleotide-binding FT domain, score 2.8e-15" FT misc_feature 681535..681630 FT /note="HMMPfam hit to PF00325, Bacterial regulatory FT proteins, crp family, score 3.7e-06" FT CDS 681796..682545 FT /transl_table=11 FT /locus_tag="BPP0643" FT /product="probable short chain dehydrogenase" FT /note="Similar to Streptomyces antibioticus Sim-nj1 or FT SimD2 or SimJ1 SWALL:Q9F5J1 (EMBL:AF321122) (273 aa) fasta FT scores: E(): 2.5e-25, 45.02% id in 251 aa, and to Rhizobium FT loti probable dehydrogenase mlr7106 SWALL:Q987C7 FT (EMBL:AP003011) (257 aa) fasta scores: E(): 2.7e-25, 41.39% FT id in 244 aa" FT /protein_id="CAE36228.1" FT /translation="MLLDNVIALVTGTAQGNGAAIARGLAAQGAAVAVCDIDLAGARRT FT AEALRAEGARAAAYELDVRDAARCAAVARQVGEDLGALGVLVNNAGVRPRHAFDGDERD FT ALWRQAMDVNVDGVRNMTLACLEGLAATRGAVVNITSIAASRASAQSIAYSTSKAAAQM FT LTKVLALELAPCGIRVNAVAPGVIETAMTQSSRDDPQRRGALMARIPMRRFGSPQDLVG FT PVTFLASPMSAYVTGAVLAVDGGFLAV" FT misc_feature 681805..682533 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 1.7e-73" FT misc_feature 682216..682302 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 682613..683590 FT /transl_table=11 FT /locus_tag="BPP0644" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein Atu4727 or Agr_l_312 SWALL:AAL45521 (EMBL:AE009401) FT (329 aa) fasta scores: E(): 1e-37, 39.62% id in 318 aa, and FT to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 2e-31, 35.2% id FT in 321 aa" FT /protein_id="CAE36229.1" FT /translation="MKSLFRSLSAATLALAVVAPQALAQDAYPTRPIRIVVPYPAGSAL FT ESVARTVSQTYNDNLGQPAVIMNKPGGSGIIGTQEVARAQPDGYTLLLGTNQTHGANSA FT LYPNLPYDALGDFTPIAGLARMQHVLVVRKNLGVDSVRGLIELASKPGANLNVGSSGNG FT SASHLVAEMFMRSADVKMAHIPYKGSGEVAQGLLGGFVDVSFATLPSVLPFIKDGSIVA FT LAVASRDRAPQLDSLPTLAQEGVRDVEADAWTALFAPAGTPPAVLAKVSAVTIDAFKDP FT GVVEKIAATGFVPEVSDGAAFKAFLAQDMQRWADVIKAANVKLD" FT misc_feature 682613..682684 FT /note="Signal peptide predicted for BPP0644 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT misc_feature 682754..683578 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.1e-83" FT CDS complement(683617..684993) FT /transl_table=11 FT /locus_tag="BPP0645" FT /product="conserved hypothetical protein" FT /note="Weakly similar to Caulobacter crescentus FT hypothetical protein Cc2770 cc2770 SWALL:Q9A4R0 FT (EMBL:AE005942) (435 aa) fasta scores: E(): 0.0018, 27.2% FT id in 430 aa, and to Erwinia amylovora hypothetical 47.8 FT kDa protein SWALL:Q9F814 (EMBL:AF264948) (427 aa) fasta FT scores: E(): 4e-05, 22.45% id in 423 aa" FT /protein_id="CAE36230.1" FT /translation="MASRTLDRVTIFAHIAEQTEPRHAFVPAGLLDRERAADGQQVLSF FT AYGLRYLKRPAAFDVDPRALSLEQARANPSMRWFPSPELGEFGGIRDAAPDAWGRRVIE FT ARLNAAPNSLDEFTYLLEAGNDRVGALDVRDRLDSPPRHPAGDLLNLPYLLQAAAAVEA FT GEPVPAKLMPYLGGAPSAGGARPKASVRDADGVLWLAKFPAANDAYDMAIVEAGAMDLA FT RAAGLTVPPLRILLAGSERILLVRRFDRYWAPPGQPPPALARGYDSHPQPGATEGRIPQ FT VSALTMMGCPEMDSTAKSYRDLAQTIRERVHPSCIAADTEELFARMVLNIFVNNDDDHL FT RNHAFSYDAQLRGWRLSPLYDVVPRPSVARERRLHLSIGAQGKLATLDNAMSEFAAFVV FT DKPAALAVIRRVWGATRNWKAVFEAHGARPALIAILEQAIRPLGEVASPALERELRRST FT " FT CDS complement(685005..685358) FT /transl_table=11 FT /locus_tag="BPP0646" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium tuberculosis hypothetical FT 11.3 kDa protein Rv2021c or Mtv018.08c or Mt2077 FT SWALL:O53467 (EMBL:AL021899) (101 aa) fasta scores: E(): FT 2.6, 30.2% id in 96 aa, and to Ralstonia solanacearum FT putative transcription regulator protein Rsc1447 or Rs03860 FT SWALL:Q8XZF4 (EMBL:AL646064) (84 aa) fasta scores: E(): FT 0.27, 37.7% id in 61 aa" FT /protein_id="CAE36231.1" FT /translation="MIAVMKRDETPLLPDKRQTETRQLGARIAQMRHGLKLRQADVAAR FT AGVSRSTAVLIEKGDPGRTLAQVLRYIHAMAPEVSLQMLLSGDVPALVALNARRRPQRV FT RATAKAELRDLDF" FT CDS complement(685490..686275) FT /transl_table=11 FT /locus_tag="BPP0647" FT /product="putative transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative transcription FT regulator protein R01691 or Smc00263 SWALL:Q92PP5 FT (EMBL:AL591788) (282 aa) fasta scores: E(): 1.4e-27, 41.29% FT id in 247 aa, and to Agrobacterium tumefaciens FT transcriptional regulator, IclR family Atu4824 or Agr_l_119 FT SWALL:AAL45618 (EMBL:AE009411) (288 aa) fasta scores: E(): FT 6.8e-25, 38.27% id in 243 aa" FT /protein_id="CAE36232.1" FT /translation="MADNGTTRAGGGDTVQSVRRALEILRILSYSSSSNGMRFSDLQAQ FT SGLSKGTLHRFLKTLSAEGFVEQAAGSRVYYLGLEFLSMGERASNRLDIQAVTRPALER FT LAQSTGDTVMLTIRSGLDAVCIDRKEGSFPVKVLTQNIGTRRPLGVGSGSLALLAAFGD FT GEVENVLRRIQPRLQPYPSLDVDKLRAQVADTRQRGYALNPGYLLKGMYGIGVAIYLAR FT QPVAALSIAAHYGRMGPDRRKTIAAALKREADRVTEELG" FT misc_feature complement(685499..686053) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 5.7e-25" FT CDS join(686462..686914,686916..687647) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0648" FT /product="probable acyl-CoA dehydrogenase (Pseudogene)" FT /note="Similar to Bacillus subtilis acyl-CoA dehydrogenase FT MmgC SWALL:ACDB_BACSU (SWALL:P45857) (379 aa) fasta scores: FT E(): 8e-38, 38.48% id in 369 aa, and to Thermoanaerobacter FT tengcongensis acyl-CoA dehydrogenases CaiA or Tte0545 FT SWALL:AAM23821 (EMBL:AE013024) (380 aa) fasta scores: E(): FT 6.9e-38, 36.45% id in 384 aa" FT /db_xref="PSEUDO:CAE36233.1" FT misc_feature 686528..686854 FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal domain, score 2.4e-05" FT misc_feature join(686858..686935,686934..687149) FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 5.5e-11" FT variation 686910..686914 FT /note="(CGCGG)1 in parapertussis; (CGCGG)2 in FT bronchiseptica" FT misc_feature 687159..687608 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 5.5e-54" FT CDS 687644..689152 FT /transl_table=11 FT /locus_tag="BPP0649" FT /product="putative acetyl-CoA synthetase" FT /note="Similar to Amycolatopsis sp. HR167 feruloyl-CoA FT synthetase Fcs SWALL:Q9EY88 (EMBL:AJ290449) (491 aa) fasta FT scores: E(): 1.8e-38, 34.77% id in 486 aa, and to FT Streptomyces maritimus putative acyl-CoA ligase EncH FT SWALL:Q9KHL1 (EMBL:AF254925) (535 aa) fasta scores: E(): FT 1.1e-38, 33.97% id in 471 aa" FT /protein_id="CAE36234.1" FT /translation="MITDRLYALAESQPDAIALVFETRQYRYRELADMVSAMAARLHRA FT GVRPGDHIALMCGNRPAFLACWFALGELGAVCVPLNTGLVGEGFCYSLAKSESRLLIVE FT PELLAPRRDTLAAMEGAPPVLEIDAAMDLPPAEPPARWAGPPCAARDLNSILFTSGTTG FT LPKGVTLPHGAYVAASDDMVQSLALTRADRILVFLPLFHANPQMYAVASVLGCGATLVL FT LRNFSASRFFDEAVAHGATGFTYVGTVLSILDKHYPEPRRDHALRWCVGGGAPARVWEA FT VESRFGISVRELYGMTETGGWVSMNTPQRARFGSVGHARAGIELAVVDEAGAPVAIRAK FT GEIVARSERPHVFFSEYWRNPEATAGTLKQGWLHTGDRGYLDEDGFLYFDGRQKELIRR FT GGEMIAPTEVEQQLLKHEQVRDCAVVGVPDDIMGEEVHAYVVLQGEPDAGALQAFLKAR FT LPAYMAPRYFSFVPAIPKTETQKIKRHLLADLPAQVVDLAVARR" FT misc_feature 687725..688915 FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 2.3e-106" FT misc_feature 688106..688141 FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 689184..690203 FT /transl_table=11 FT /locus_tag="BPP0650" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical FT protein Sco6307 or Scif3.09C SWALL:Q93RT4 (EMBL:AL590982) FT (320 aa) fasta scores: E(): 7e-12, 34.94% id in 332 aa, and FT to Aspergillus fumigatus hypothetical 35.1 kDa protein FT Afa14e5.08 SWALL:CAD27299 (EMBL:AL683874) (313 aa) fasta FT scores: E(): 1.3, 27.66% id in 329 aa" FT /protein_id="CAE36235.1" FT /translation="MTRRWKQRPPGSNWGDFGDDDQLGRLNLLTPEKVREAVAEVQEGI FT VFSLSLPLDMPGGNVLNPARHPPRLMPTRRDDKPMYLHAFEHDHNTTDVACDDMVAMSL FT QYSTQWDALSHIGSHFDADGDGVAEIVFYNGYTGKENFSHRREDRDSPSRAHRLGIEHM FT AAKGVQGRGVLLDLRRHFGDERKRVGYDDLMRVIEHDRVEVRKGDMLCLHTGFADVVLG FT MGGKPDAQRLARSCAVLDGSDSRLLDWIDDSGIAALIADNYAVEDRPYDFKGDGCHALL FT PLHERCLFKLGLHLGELWHLSPLAEWLERHERHAFLLTAPPLHLPGAVGSPLNPIATV" FT CDS 690213..690698 FT /transl_table=11 FT /locus_tag="BPP0651" FT /product="conserved hypothetical protein" FT /note="Similar to Sulfolobus tokodaii hypothetical protein FT St0068 SWALL:Q976X1 (EMBL:AP000981) (165 aa) fasta scores: FT E(): 6.1e-12, 34.16% id in 161 aa, and to Archaeoglobus FT fulgidus monoamine oxidase regulatory protein, putative FT Af0198 SWALL:O30041 (EMBL:AE001092) (146 aa) fasta scores: FT E(): 1.4e-11, 36.76% id in 136 aa" FT /protein_id="CAE36236.1" FT /translation="MALEIEDADGVPYVGLGLHFAEFPLGRRFRTVGRTITEADLVNFV FT NATGFTEVLFTDTEFVQAQSDMRGRVVPGALVFSMVEGLLMQACMQHTGFAFLEMELKV FT EGPTYVGDTLHVRCEVIEARHSKSRADRGLVRTRNHVVNQRGEVVMVYTPMRFVRRQ" FT CDS 690761..691744 FT /transl_table=11 FT /locus_tag="BPP0652" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 5.5e-44, 40.86% id in 323 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 1.8e-41, 40.49% FT id in 321 aa" FT /protein_id="CAE36237.1" FT /translation="MKKPIGILRATLLCGVAVLATGGHAFAQDNWPSKPIRLLVGFAPG FT GPTDNVARILAEKMGTELGQPVIVENKAGAAGNIAATALTQATADGYTLLYNTSSIVIA FT PWVYRSPGFDPLKDFAPAGLTAAVPLVLAANMQVPAQTPKALVDMVKAGPDKYNYASSG FT VGAIEHLTAAQLLSTLGLKATHVAYKGTAPAQVDLISGATQFTTTTLNTVIAPVQAGKL FT RALAITSRERWSGMPDVPTVAETLIPGFESLAWQGIVAPAGTPEPVLAKINKAINDALA FT SPDVRQKLDQQGTIVLGGSVDKYRAYIKSEYDRWGKVVEQAGARID" FT misc_feature 690761..690841 FT /note="Signal peptide predicted for BPP0652 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 27 and 28" FT misc_feature 690911..691732 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 8e-95" FT CDS complement(691790..692623) FT /transl_table=11 FT /locus_tag="BPP0653" FT /product="putative enoyl-CoA hydratase/isomerase family FT protein" FT /note="Similar to Caulobacter crescentus enoyl-CoA FT hydratase/isomerase family protein Cc2575 SWALL:Q9A582 FT (EMBL:AE005925) (265 aa) fasta scores: E(): 8.7e-38, 46.72% FT id in 244 aa, and to Rhizobium meliloti putative enoyl-CoA FT hydratase protein PaaG or Rb1553 or Smb21633 SWALL:Q92TG7 FT (EMBL:AL603647) (263 aa) fasta scores: E(): 1.3e-23, 36.11% FT id in 252 aa" FT /protein_id="CAE36238.1" FT /translation="MSPPMTTPAPASPCYARFSVDEAGIGLLTLDDPATQNAMSLAMMD FT ALAAIHPVICATPQLRVLIVTGAGKAFSAGGNVHDMLERRGVFAPEDPLAARDLNLERV FT HAIPRAIHGLPMPTIAAVNGHAVGGGCDVALMCDIRIASDQAVFAESFLRVGLLPGDGG FT AWFLPRAVGLSRAMEMALTCDFIDAREAERIGLVSRVVPHATLLDEAYALARRIARHPP FT RIARMTKRLMQFGAHATLHDTLEMTASMQGMVQTADEHKDAARAIADAVASRSRR" FT misc_feature complement(692003..692050) FT /note="PS00038 Myc-type, 'helix-loop-helix' dimerization FT domain signature." FT misc_feature complement(692018..692548) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 2.6e-48" FT misc_feature complement(692207..692269) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(join(692620..693342,693346..694023)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0654" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Similar to Rhizobium loti hypothetical protein FT Mlr5032 SWALL:Q98CS1 (EMBL:AP003005) (440 aa) fasta scores: FT E(): 2.8e-36, 33.02% id in 433 aa, and to Homo sapiens FT hypothetical 45.7 kDa protein SWALL:Q8WV27 (EMBL:BC018918) FT (404 aa) fasta scores: E(): 7.3e-31, 31.07% id in 399 aa" FT /db_xref="PSEUDO:CAE36239.1" FT variation complement(693343..693345) FT /note="In-frame TAG stop codon in parapertussis; TGG in FT bronchiseptica" FT CDS complement(694020..695246) FT /transl_table=11 FT /gene="gcdH" FT /locus_tag="BPP0656" FT /product="glutaryl-CoA dehydrogenase" FT /EC_number="1.3.99.7" FT /note="Similar to Mus musculus glutaryl-CoA dehydrogenase, FT mitochondrial precursor GcdH SWALL:GCDH_MOUSE FT (SWALL:Q60759) (438 aa) fasta scores: E(): 4.1e-101, 65.89% FT id in 387 aa, and to Pseudomonas aeruginosa glutaryl-CoA FT dehydrogenase GcdH or Pa0447 SWALL:Q9I671 (EMBL:AE004482) FT (393 aa) fasta scores: E(): 6.5e-104, 66.15% id in 387 aa" FT /protein_id="CAE36240.1" FT /translation="MDTQTSSPDTKQHYQPFVWEDPFLLHEQLTEDERMIQATAHAYGQ FT EQLLPRIVHAHRTETFDRKIILELGQLGFLGATLEGYGCAGVNHVSYGLIGREMERVDS FT AYRSSVSVQSSLVMYPIHTFGSEEQRQTYLPGLASGELVGCFGLTEPDHGSDPGGMATR FT ARGVAGGYRLSGAKSWITNSPIADVFLIWAKDDAGDIRGFILDRGMQGLSTERIDGKFS FT LRASITGTIAMDEVFVPQDRMLPHVKGLRGPFSCLNKARLGISWGALGAAEACLHQARD FT YVLARTQFGRPLASNQLVQKKLADMETEIAIGLQASLQVARLMDQGRVSTEAISIIKRN FT NCGKALEISRVARDMLGANGVSDEYHIIRHMINLEAVNTYEGTHDIHALIVGRAITGIQ FT AFYDSGSTQ" FT misc_feature complement(694059..694505) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 7.9e-47" FT misc_feature complement(694515..694808) FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 2.4e-13" FT misc_feature complement(694812..695162) FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal domain, score 2e-17" FT CDS complement(695293..696093) FT /transl_table=11 FT /locus_tag="BPP0657" FT /product="probable enoyl CoA hydratase" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydratase Crt or Cac2712 FT SWALL:CRT_CLOAB (SWALL:P52046) (261 aa) fasta scores: E(): FT 2.8e-28, 38.82% id in 255 aa, and to Sulfolobus FT solfataricus 3-hydroxyacyl-CoA dehydrogenase/enoyl CoA FT hydratase sso2514 SWALL:Q97VU5 (EMBL:AE006848) (663 aa) FT fasta scores: E(): 6.5e-32, 37.98% id in 258 aa" FT /protein_id="CAE36241.1" FT /translation="MSEFTPKTILVEVRDHVAWITINRPDAMNALARETVIEIDQALQL FT LEARADVHALVFTGQGRAFCAGGDLKYFKETVGSGDMNKFRAYLNLCQNMYRRVENFPH FT PTIAAVNGVAVAGGMELIISCDLVIAAESAKIGDGHANFGIIPGGGGAIRLPRKIPMAL FT AKRLLFTGNLLPARELAEYGLVNQVVPDEQLTEAVQALLAQITKNSPLGVRLIKQLIND FT GYEQPLDTALRLEVVAWESYGLSNDIKEGLQAFQDKRKPRFSGT" FT misc_feature complement(695524..696042) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 1.2e-49" FT misc_feature complement(695713..695775) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(696112..697296) FT /transl_table=11 FT /locus_tag="BPP0658" FT /product="probable thiolase" FT /note="Similar to Cucurbita cv. Kurokawa Amakuri FT 3-ketoacyl-CoA thiolase precursor SWALL:P93112 FT (EMBL:D70895) (461 aa) fasta scores: E(): 4.6e-51, 41.43% FT id in 391 aa, and to Caulobacter crescentus thiolase family FT protein Cc3462 SWALL:Q9A2U4 (EMBL:AE006005) (395 aa) fasta FT scores: E(): 7.3e-85, 56.56% id in 396 aa" FT /protein_id="CAE36242.1" FT /translation="MREAVIVSTARTPIGKAYRGAFNQTHGAELGGHSLRHAIARSKVD FT PAEIEDVIIGCGMPQGATGYNIGRQIAICGGLPIETGGTTVNRLCASGLQAIAIAAQRI FT MVDRVPVMAAGGLECISIVQDEHHNGVKKSPWIEAHKPHTYDAMLRTAEVVAQRYGVSR FT DAQDDYAFQSQMRTAAAQRDGRFDDEIVPMTTVKLSKNKETGATYEEEVTLLRDEGNRP FT DTTREGLATLQPVMEPDTSITAGNASQLSDGSSACILMEAKEAERRNLEPLGTFRGFVA FT TGCEPDEMGIGPILAVRTLFQRFGLRMEDIDLWELNEAFASQTVYCRDQLGIPNELLNV FT NGGAISVGHPYGMSGARMVGHALIEGRRRGARLVVVSMCVGGGMGAAGLFEVYR" FT misc_feature complement(696121..696495) FT /note="HMMPfam hit to PF02803, Thiolase, C-terminal domain, FT score 7e-51" FT misc_feature complement(696232..696282) FT /note="PS00737 Thiolases signature 2." FT misc_feature complement(696508..697296) FT /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain, FT score 4.6e-63" FT misc_feature complement(696985..697041) FT /note="PS00098 Thiolases acyl-enzyme intermediate FT signature." FT CDS 697563..698537 FT /transl_table=11 FT /locus_tag="BPP0659" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein Atu4727 or Agr_l_312 SWALL:AAL45521 (EMBL:AE009401) FT (329 aa) fasta scores: E(): 1.5e-37, 39.53% id in 301 aa, FT and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 8.6e-37, 36.74% FT id in 313 aa" FT /protein_id="CAE40068.1" FT /translation="MIRSLLVGLLLTLGPAAAQAAESPDRYPSKPITIIVPFSAGGPAD FT NVTRYIANQLGKTWNQQVVVENRTGAGGMIGAEAVARAAPDGYHLVLLVTGHTIMPGMQ FT ASMPYRMPQDFTGITVVNRAPKLVVVHPSVPVASFAELIEKVKQEPGKYGSYGTSGVGS FT MAHLSMELVNKLAGTKFVHIPYKGGGATQADLVAGRLPIGVLDLGSVLPHVQAGSLKVL FT AVTSDTRSPLFPDVPTIAEVIPNFQATEWFGLAGPKGVPPAIADKLQAAIKAALSTPEA FT RTRYIEGLGWELPASTPKEMDEVLASQTVKWGALVKELGLKAQ" FT misc_feature 697563..697622 FT /note="Signal peptide predicted for BPP0659 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 20 and 21" FT misc_feature 697701..698525 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.4e-80" FT CDS 698539..699981 FT /transl_table=11 FT /locus_tag="BPP0660" FT /product="putative acetyl-CoA synthetase" FT /note="Similar to Pyrococcus furiosus acetyl-CoA synthetase FT AcdA SWALL:Q9Y8L1 (EMBL:AJ240061) (462 aa) fasta scores: FT E(): 4.6e-41, 33.26% id in 457 aa, and to Pyrococcus abyssi FT succinyl-CoA synthetase alpha chain related protein pab2112 FT SWALL:Q9V1S3 (EMBL:AJ248284) (472 aa) fasta scores: E(): FT 2.2e-40, 31.71% id in 473 aa" FT /protein_id="CAE40069.1" FT /translation="MDAVAMKSVTQLTVNADHLQGAIGALFKARTVAVVGISADHAKLG FT NVILRNVVKNGFAGNIYGVCRAPVEPGVFEAGYERVRFVQAFSEIEEPVDVALFAVPAD FT MVVTALASVPLGRLRLAVILASGFTETGERGALLETALRQYCLETQLPVVGPNCQGVVV FT PGVKLQMTFSPMYNRMLEGKVAIVSQSGAMAGYMANNLMRRGVGLCCVVSSGNEAVLTA FT ADYIHALADKPECRVVLCYIEQIKNGRHFARSVQRLGPQQRIVVVKSGRSTAGVAAASS FT HTGAMASDDRVIDGVFRQLGVVRARDSATAIDVAMALANGRRMKGGAVGILSVAGGLAV FT ELSDLLEMDGFTVPRFDPDTLERLKAKVPEFGASRNPIDLSGAILTQESLFEEVLNLFA FT RARNLDGFAIISTFIRNPAFAHAIVRMYRSTDKPVVVCWTGTPEQTPESLEILTRSGIP FT IYGDTGRVALALRAIRGDTDIS" FT misc_feature 698614..698961 FT /note="HMMPfam hit to PF02629, CoA binding domain, score FT 4.3e-05" FT CDS 699997..700710 FT /transl_table=11 FT /locus_tag="BPP0661" FT /product="conserved hypothetical protein" FT /note="Similar to Archaeoglobus fulgidus hypothetical FT protein Af1211 SWALL:O29057 (EMBL:AE001020) (685 aa) fasta FT scores: E(): 9.6e-16, 37.63% id in 186 aa, and to FT Pyrococcus furiosus hypothetical protein Pf1837 FT SWALL:AAL81961 (EMBL:AE010279) (236 aa) fasta scores: E(): FT 4e-15, 33.04% id in 233 aa" FT /protein_id="CAE40070.1" FT /translation="MSTAISMAGAGTKLDEIDLLLQQWIDAGRQVVHEADSKRILAMAG FT FPVPGEARGGPAVVKLCADEALHKSELGLVALDVAPGDVERARRELQERSRRAGVAGGE FT VLVESMVGDVLMEWFVGCRTDHTFGPVVVVGAGGIYAELLGAPEIRMAPLSARDAERAL FT RHHKAFPIIDGARGREPADIGAFARLIADVSEFYYRRSHLIAELDLNPVMVRGRHLDPG FT MVVADASIILQKPTF" FT CDS complement(700685..701641) FT /transl_table=11 FT /locus_tag="BPP0662" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli and Escherichia coli FT O157:H7 glycine cleavage system transcriptional activator FT GcvA or B2808 or Z4125 or Ecs3668 SWALL:GCVA_ECOLI FT (SWALL:P32064) (305 aa) fasta scores: E(): 4e-27, 32.33% id FT in 300 aa, and to Rhizobium loti glycine cleavage system FT transcription activator Mlr1973 SWALL:Q98JE9 FT (EMBL:AP002998) (303 aa) fasta scores: E(): 2.2e-28, 36.33% FT id in 300 aa" FT /protein_id="CAE40071.1" FT /translation="MQRMPPLNALRSFESAARHESFLKAAAELHVTPGAVSRLVKSLES FT YLGVELFMRSHRGVAITPQGKAFAEDILEAFNKIGIATDRVQQHPGDRGLSICCHPTFA FT AHWLTPRWAQVQAALPSTQINVKTTLAPELESTDDYDFVVKLGPDPAAEQACSGGVAAE FT RVLDVETFPICSSAFLQRHGGELGLDDIERYPLIHAQLRPQDWNRWLQSVGQPALRQAP FT ALVFESLTLAYNAAMSGAGMAIGIHAFIADDIASGRLVAPFPQVRKSHMGFNIYFNAQR FT AARVPRIEQIRRWMVQERNKTRATDTAAALRKSAFAE" FT misc_feature complement(700742..701380) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 3.7e-16" FT misc_feature complement(701444..701623) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 6e-23" FT misc_feature complement(701489..701581) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS complement(701861..702718) FT /transl_table=11 FT /locus_tag="BPP0663" FT /product="putative hydrolase" FT /note="Similar to Ralstonia solanacearum putative hydrolase FT protein Rsp0790 or Rs01917 SWALL:Q8XRP1 (EMBL:AL646080) FT (305 aa) fasta scores: E(): 2.3e-16, 33.61% id in 238 aa, FT and to Streptomyces coelicolor putative hydrolase Sco4395 FT or Scd10.27 SWALL:Q9K3V0 (EMBL:AL359988) (352 aa) fasta FT scores: E(): 4.5e-15, 31% id in 258 aa" FT /protein_id="CAE40072.1" FT /translation="MQRRDYRLAHAGLDFHVTEWGSPQGLPVVMLHGIRGYAETFAGIA FT AALQPEYRVIAFDQRGRGRTDWDADCNYYTDTYVADLAAVADQLSLARFDLLGHSMGGI FT NAIVYAARHPGRVGRLVVEDAGPGAFEDSDGARRIRRELAETPAGFASWDAASDFMRSL FT RPSVSEQARQQRLESMLKPAPEGGYVWRYDHAGIARTRLHPDPARVVDLAAYVARIGCP FT TLLLRGGRSDYLQPAMVERMRALNPRIEAVEIADAGHYIHDDQPAAFARHVCRFLKPHA FT PAGA" FT misc_feature complement(701888..702565) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 1e-25" FT CDS complement(702744..703346) FT /transl_table=11 FT /locus_tag="BPP0664" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT Mlr6789 SWALL:Q988D2 (EMBL:AP003010) (196 aa) fasta scores: FT E(): 3e-22, 38.71% id in 186 aa, and to Agrobacterium FT tumefaciens hypothetical protein Atu4237 or Agr_l_1248 FT SWALL:AAK89202 (EMBL:AE009353) (200 aa) fasta scores: E(): FT 2.1e-14, 39.08% id in 197 aa" FT /protein_id="CAE40073.1" FT /translation="MKTPNFSVYHIRKWYLQVEDTLAGETGAPADGEPLRKIVLAACIH FT NPYAGKYVEDLTLWIDASPGLGAEFGRRVREAAQGQAIASYGKACLVGADGEYEHGNAL FT LTNPAANPVRDALGGAKSWVPSTGKRGGPGTIIDIPLAHKDALYVRSHYDTVSAQFNDG FT PNRDEVVLIWAFATRGRLNARLGGLAACDVQGHDGLN" FT misc_feature complement(702879..702908) FT /note="PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family FT signature 1." FT CDS complement(703387..704421) FT /transl_table=11 FT /locus_tag="BPP0665" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsp1343 or Rs04767 or Rsp1312 or Rs05665 FT SWALL:Q8XFV7 (EMBL:AL646084) (388 aa) fasta scores: E(): FT 1e-06, 28.44% id in 327 aa, and to Streptomyces coelicolor FT putative oxidoreductase Sco6723 or Sc5f2a.06 SWALL:Q9X7M9 FT (EMBL:AL049587) (348 aa) fasta scores: E(): 9.5e-06, 28% id FT in 300 aa" FT /protein_id="CAE40074.1" FT /translation="MQGTILVGTAGQGILRSNDNGASWHRLGLKEAIEFDGTVRSLAVD FT PANPARVLAGADAGICLSTDGGAHFSLVDSPANGQTIWSVAFSPRDPRLVFAGSGAPSR FT ARMYRSRDGGQSWEQLSPELPEFCSGVHRPRILTVCAHPEQAEEVWFGVEEGGAWRSTD FT AGDTWERIDAPGRGINNSDIHSITLLPAASGQPATQIVVTVNSVCQSVDEARSFDCQAS FT RERFDGLYYTRAVYPLDAAGQTLLLAVGDGTPGTRTRIYRSEDRGRSWAPALLHTAPNS FT TVWAFGAHPSDPALVFAGTKYGHLLRSTDGGRSWYKEWRDFSEITSVAWTPHVAPVHAH FT PQSI" FT misc_feature complement(703471..703506) FT /note="HMMPfam hit to PF02012, BNR/Asp-box repeat, score FT 3.5" FT misc_feature complement(703606..703641) FT /note="HMMPfam hit to PF02012, BNR/Asp-box repeat, score FT 15" FT misc_feature complement(703912..703947) FT /note="HMMPfam hit to PF02012, BNR/Asp-box repeat, score FT 1.2" FT misc_feature complement(704065..704100) FT /note="HMMPfam hit to PF02012, BNR/Asp-box repeat, score FT 0.45" FT misc_feature complement(704206..704241) FT /note="HMMPfam hit to PF02012, BNR/Asp-box repeat, score FT 1.5e+02" FT misc_feature complement(704344..704379) FT /note="HMMPfam hit to PF02012, BNR/Asp-box repeat, score FT 14" FT CDS 704674..705312 FT /transl_table=11 FT /gene="gst" FT /locus_tag="BPP0666" FT /product="glutathione S-transferase" FT /EC_number="2.5.1.18" FT /note="Similar to Escherichia coli and Escherichia coli FT O157:H7 glutathione S-transferase Gst or B1635 or z2647 or FT ecs2344 SWALL:GT_ECOLI (SWALL:P39100) (201 aa) fasta FT scores: E(): 5.8e-28, 41.41% id in 198 aa, and to Yersinia FT pestis glutathione S-transferase Gst or Ypo2367 FT SWALL:Q8ZE22 (EMBL:AJ414152) (201 aa) fasta scores: E(): FT 3e-31, 43.28% id in 201 aa" FT /protein_id="CAE40075.1" FT /translation="MKFYHEVRGCSLAVDIVARELGLALDLQWVDMANKRLADGSDYLK FT VNSKGTVPTLELPDGQFLSEDAVIMQYLADQRPQQGMLPAAGTLARYRVLEWMSFIAAD FT LHKGGFMPLFKAITPPEYRRIARQYLDGRLQWLNDQLAGREFLMGETFTIADAHCYTIA FT MWTRAHDIDTSAWPHLEAYLARVGARPSVRAAEQAARDEGERQRAAAAR" FT misc_feature 704680..704898 FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal domain, score 1.5e-05" FT misc_feature 704926..705243 FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain, score 1.9e-14" FT CDS 705350..706315 FT /transl_table=11 FT /locus_tag="BPP0667" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein Atu4727 or Agr_l_312 SWALL:AAK88723 (EMBL:AE009401) FT (329 aa) fasta scores: E(): 6.1e-38, 40.82% id in 316 aa, FT and to Ralstonia solanacearum putative signal peptide FT protein Rsc3088 or Rs00540 SWALL:Q8XUU5 (EMBL:AL646073) FT (317 aa) fasta scores: E(): 2.6e-37, 42.02% id in 307 aa" FT /protein_id="CAE40076.1" FT /translation="MNWTKRIAIVLAGLAAAPLALAADPAAPLKLVVGFPPGGGTDGAA FT RIVAEHLPQQLGRPVVVENRAGAAGTLGAQAVRRAPPDGNTLFFGTSAELLINPITRKT FT APYDVQKDFMPVTEVGSVAFVLVAPASSTVRSVPDLIAAAKARPGKLNFSSFGMGSTNH FT LIGELFLSTTGISASHIPYQGSAQAMTALLAGDVNFTFDTVAVAQPHIQSGKLIALATP FT SPARLAELPEVPTLRELGYADLTAEGWMGIFAPVGTPPQDIASLNAAFAKVLALPDVRA FT KLAARGVGIVGGSPEQYRDKLATESRKWRQVAQDSGISLE" FT misc_feature 705350..705415 FT /note="Signal peptide predicted for BPP0667 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 22 and 23" FT misc_feature 705479..706303 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.9e-98" FT CDS complement(706361..707347) FT /transl_table=11 FT /locus_tag="BPP0668" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein Atu4727 or Agr_l_312 SWALL:AAL45521 (EMBL:AE009401) FT (329 aa) fasta scores: E(): 3.5e-29, 37.07% id in 321 aa, FT and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 5.6e-21, 35.92% FT id in 270 aa" FT /protein_id="CAE40077.1" FT /translation="MKRRTFNIGLLGLMASGALVRTRPAMAQDAALPSLVTLVAPFAPG FT GGADQLAREFAHFAQSRAPGTTFVVENKPGANGAIAARHVARQQPDGATLLLGTSSTHA FT LGPLIAKADPALIVKEFSPVTLLATTANVLAVASTSRWKTLDDFVADARGQALTYGTFG FT TGSSAHLYGLLLAQSTGARLSHVPYKGSSQAATDLLGGHIDAVFLTSSALEGLAREGKV FT RVLGVTGKTRTRVFPDARTFEEQRVAQLDFSGWFGLFAPAGTPAPRREAIAALAASLGK FT DAAASQRMTGQGYDWVGSSPQALQDSLLDTLGIYQKVLATRPDGLGG" FT misc_feature complement(706370..707197) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 4.7e-44" FT misc_feature complement(707267..707347) FT /note="Signal peptide predicted for BPP0668 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 27 and 28" FT CDS complement(707490..708188) FT /transl_table=11 FT /locus_tag="BPP0669" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Yersinia pestis putative GntR-family FT transcriptional regulatory protein Ypo3651 SWALL:Q8ZAY1 FT (EMBL:AJ414158) (220 aa) fasta scores: E(): 5.3e-27, 45.63% FT id in 206 aa, and to Rhizobium loti transcriptional FT regulator Mll6786 SWALL:Q988D5 (EMBL:AP003010) (223 aa) FT fasta scores: E(): 5.2e-22, 43.84% id in 203 aa" FT /protein_id="CAE40078.1" FT /translation="MRMMEPDVPHDGATDDKASMPLRRQAEDALRKTILSGRFMPGERL FT KERELMELLNASRTLVREALRQVEAEGLIEIVPNRGPVVAVLSYEEAEEIYEVRGILEA FT QTCTGFALRAGSGHMKTLGAAFDALSEAARQGDIPRTLTLSDTFYHTIAAGCGNRLLGN FT MLRQLHNRIVLLRRTSLSEPSRLPETLYELTQIFEALKARDEIAAGKAALHHVRQASRT FT ALQVLRSRQS" FT misc_feature complement(707937..708113) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.6e-12" FT CDS 708402..709925 FT /transl_table=11 FT /locus_tag="BPP0670" FT /product="probable aldehyde dehydrogenase" FT /note="Similar to Escherichia coli succinate-semialdehyde FT dehydrogenase [NADP+] GabD or B2661 SWALL:GABD_ECOLI FT (SWALL:P25526) (482 aa) fasta scores: E(): 6.1e-40, 32.1% FT id in 461 aa, and to Rhizobium meliloti putative aldehyde FT dehydrogenase transmembrane protein R03290 or Smc04385 FT SWALL:Q92L07 (EMBL:AL591793) (510 aa) fasta scores: E(): FT 2e-129, 68.87% id in 498 aa" FT /protein_id="CAE40079.1" FT /translation="MTTVHSATPEETRRLLQQLGVDPARYDGGTLEVRSPIDGQAIARL FT PELTAEQARARVADARQAFLAWRKVPAPRRGELVRLLGEELRAAKAELGRLVSIETGKI FT LSEGEVQEMIDICDFATGLSRQLYGLTIATERAEHRMMETWHPAGPVAIISAFNFPVAV FT WAWNAAIALVCGDSLLWKPSEKAPLTALATQALLERALARFGDAPAHLSQVLIGGREVG FT EALVDDPRIPIVSATGSTAMGRKVGPKVAERFGRSILELGGNNAAIICPSANLDLALCG FT IAFSAMGTAGQRCTSLRRIFVHEQIADDLVARLQQVYESVAIGDPRDSGTLIGPLRDQA FT AFDAMQRSLADARAAGGRVTGGAREPVGGHDQAYYARPALVEMPAQSEVVERETFAPIL FT YVMRYRDLDEAIALQNDVPQGLSSSIFTNDLREAERFVSAEGSDCGIANVNIGPSGAEI FT GGAFGGEKETGGGREAGSDSWKAYMRRTTNTVNYGNALPLAQGVKFDVA" FT misc_feature 708483..709877 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 4.6e-128" FT misc_feature 709176..709199 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT CDS 709942..711105 FT /transl_table=11 FT /gene="metC" FT /locus_tag="BPP0671" FT /product="cystathionine beta-lyase" FT /EC_number="4.4.1.8" FT /note="Similar to Escherichia coli cystathionine beta-lyase FT MetC or B3008 SWALL:METC_ECOLI (SWALL:P06721) (395 aa) FT fasta scores: E(): 1.7e-59, 43.07% id in 390 aa, and to FT Rhizobium meliloti probable cystathionine beta-lyase FT protein MetC or R01479 or Smc02117 SWALL:Q92Q70 FT (EMBL:AL591787) (395 aa) fasta scores: E(): 7.5e-66, 47.54% FT id in 387 aa" FT /protein_id="CAE40080.1" FT /translation="MKPDTRLVHLGRDPERFEGLVNIPPCRTSTFLHASVADYQAAASR FT KQDSLYYGRFGSQTSRALEAACTELDGGHGAMLFPCGLAAITRVLGSLLEPGQYLLMAD FT TVYGPARAFCEQELARLGVETTWYAPDADLDALVRPATRVIYGEAPGSLTFEMQDLRAL FT AEVARRHGLVSVVDNTWATSWFCQPLALGIDISIQSASKYIVGHSDAMLGVAVANEAQF FT PALRRAAAQYGNAVSPDDCYMALRGLRTLGVRLERHQASALRVAQWLRTRAEVEQVLHP FT ALPDSPGHALWRRDFSGASGLFGVAFRAGDDAALARFVDDLRLFGIGVSWGGFESLALP FT SHPVRNTSAAALGGRPLVRLHIGLEDPDDLIADLARALDRHMAAARG" FT misc_feature 709951..711078 FT /note="HMMPfam hit to PF01053, Cys/Met metabolism FT PLP-dependent enzyme, score 8.1e-112" FT CDS 711136..711486 FT /transl_table=11 FT /locus_tag="BPP0672" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT R00736 or Smc00791 SWALL:Q92RV5 (EMBL:AL591784) (114 aa) FT fasta scores: E(): 2.1e-18, 54.86% id in 113 aa, and to FT Neisseria meningitidis hypothetical protein Nma1463 FT SWALL:Q9JU73 (EMBL:AL162756) (120 aa) fasta scores: E(): FT 3.9e-16, 45.61% id in 114 aa" FT /protein_id="CAE40081.1" FT /translation="MSDIQYVETSPCYSKAVIHGDTVYLAGQVADDPGGTVQDQMRQIL FT AQIDALLARCGTDKSRLLSAMVLLKDMRDLEAINPLWDAWVVPGRAPTRTPSEARLALP FT GYLVEVQVTAAR" FT misc_feature 711154..711480 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01042, YjgF family, score 4.3e-19" FT CDS 711789..712748 FT /transl_table=11 FT /locus_tag="BPP0673" FT /product="putative exported protein" FT /note="Similar to Bacillus halodurans hypothetical protein FT Bh2007 SWALL:Q9KBC1 (EMBL:AP001514) (339 aa) fasta scores: FT E(): 1.6e-26, 32.43% id in 296 aa, and to Alcaligenes FT eutrophus hypothetical 35.6 kDa protein in gbd 5'region FT precursor SWALL:YGB7_ALCEU (SWALL:Q44018) (327 aa) fasta FT scores: E(): 5.2e-22, 29.61% id in 314 aa" FT /protein_id="CAE40082.1" FT /translation="MKKLIVAALFAVLPSMVGAQQAPRGTMTIVNPFTVSGLTDLVARM FT VAEKAHAKFPDGVAVVSRPGGGGSIGIASVVNARPDGSSIGFTPTGAVVDAPQMMKGLA FT YKTPDDIDPIINVFSSYQMLAVRGDADWKTAQDFIKAVRQSPGKYSLGHTGNGTASHLN FT MAQLVQAAKLNVLEVPYKGWAQSSVALLGGYVDAIVINAGEGRALVDEGRLRILGVFQA FT QRVPYHPDVPTFKEIGYDVGVGLKFFFFGPRNMDAGVKQYIHDAFKQAMQNDDFKKFIA FT SREVEVDYMDGAQTKAMLWSEYKQHTKLLDSLGLLAKQ" FT misc_feature 711789..711845 FT /note="Signal peptide predicted for BPP0673 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.961 between residues 19 and 20" FT misc_feature 711912..712733 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3.5e-36" FT CDS 712773..713885 FT /transl_table=11 FT /locus_tag="BPP0674" FT /product="conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical protein FT Ypo1516 SWALL:Q8ZG04 (EMBL:AJ414148) (418 aa) fasta scores: FT E(): 4.1e-27, 30.97% id in 410 aa" FT /protein_id="CAE40083.1" FT /translation="MASIKGLREVAYFDCAGGGQVYVQGNYAYIAHMDAPAGTTIVDIS FT DPRHPRQVAHIPIPDGVHTHKVRVENDLMLVNWECPPPYILGENFQGGLAIYDVSDPTN FT PRQICFWKTAGTGVHRFDFDGRHTYITPEVEGYHLNIAMILDLENPAKPREVGRWWMPG FT QWVAGGETPDEGYRMTWCHQVLRRGNRLYVAYWHGGMVILDIEDMSKPKLVSKFAYSPA FT FAHPTHTVLPLPFELAGRKIAIVADEDVRKVRPSPPPFMWLFDITDETQPVPISTYQIE FT ELMDKNMPEFTGCHQPAEQVYGTEIPVAWFAKGLRVVDVKNPHAPREVAHFEPDIPGFD FT RAQTNDVFLTKEGLMYIIDRNRGMHILERI" FT CDS 713900..714922 FT /transl_table=11 FT /locus_tag="BPP0675" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT R02870 or Smc02978 SWALL:Q92LZ1 (EMBL:AL591792) (368 aa) FT fasta scores: E(): 9.2e-57, 58.51% id in 364 aa, and to FT Brucella melitensis low affinity zinc transport membrane FT protein Bmeii0308 SWALL:Q8YD69 (EMBL:AE009669) (372 aa) FT fasta scores: E(): 7e-57, 60.71% id in 364 aa" FT /protein_id="CAE40084.1" FT /translation="MSEATRKVPVTVLTGHLGAGKTTLLNRILTGQHGRKYAVIVNEFG FT EIGIDNDLIVESDEEIYEMNNGCICCTVRGDLIGILHKLLRRPGRFDAIVVETTGVADP FT APVVQTFMMDEEVREKTELDAVITMVDAKHFPLRLADSQEAEDQIVYADVVLINKVDLV FT SAGEADQVQRRVAAINPYAACHRVQRAEIDLARILSIGAFDLQRCVELEARAAPAGCGH FT EHEHDAHCQGGTDHHHHHHEISVMSVSLQAGALDGRRFFPWIHSLVEKQGPDILRMKGI FT LALDDDARRYIIQGVHMIVEGEHQRAWRDDEPRASKLVFIGRGLDAQALRAGFEACRSQ FT " FT misc_feature 713942..713965 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 714014..714865 FT /note="HMMPfam hit to PF02492, Cobalamin synthesis FT protein/P47K, score 5.4e-62" FT CDS 714919..715920 FT /transl_table=11 FT /locus_tag="BPP0676" FT /product="conserved hypothetical protein" FT /note="Similar to Brucella melitensis vegetatible FT incompatibility protein Het-e-1 bmeii0307 SWALL:Q8YD70 FT (EMBL:AE009669) (324 aa) fasta scores: E(): 2.2e-45, 39.45% FT id in 327 aa, and to Rhizobium meliloti hypothetical FT protein R02871 or Smc02979 SWALL:Q92JW5 (EMBL:AL591792) FT (329 aa) fasta scores: E(): 1.2e-40, 38.36% id in 331 aa" FT /protein_id="CAE40085.1" FT /translation="MKMLNRLDLGVPCLRAGFAGEQAFFLAMDGRLHVQQGDQRRVVAL FT HDGDVLSACAAPGQADAAAWLLSAGEDGRVMRAGAGEPDCVASVPNKWVTALAVAADGA FT LAYASGRTVWLAGGGGEAAALPQERPVQALRFSHGGRWLAVAGYDGLALYDRQAGGEPQ FT RLDWKGMPTRVAFSPDDRFVLVATRDAVLHGWRLDTLRHFRMVGYPRAVGSWSWLAGGQ FT WLATDGSAGAVLWPFEGEEGPIGSTPLALGERPDGEVSAVACHPARPWVAVGYADGLMV FT LESTDGALRRILGQAGRDRVACLAWDRAGARLAYGTPSGACGVIQADTGEEG" FT CDS 715923..716213 FT /transl_table=11 FT /locus_tag="BPP0677" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE40086.1" FT /translation="MCAEVDYEDRGTYRKVPPPSEALVERTRQVEAGMPGERVPEQAWG FT TFFAVSCGVMDMGSFQRMFEARRIALSYLAMQRARYARRHGGGTGLRCIGD" FT CDS 716303..717046 FT /transl_table=11 FT /locus_tag="BPP0678" FT /product="transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT regulator KdgR or B1827 SWALL:KDGR_ECOLI (SWALL:P76268) FT (263 aa) fasta scores: E(): 1.3e-22, 36.32% id in 245 aa, FT and to Bacillus halodurans transcriptional regulator KdgR FT or Bh3725 SWALL:Q9K6K4 (EMBL:AP001519) (251 aa) fasta FT scores: E(): 7.5e-28, 38.34% id in 253 aa" FT /protein_id="CAE40087.1" FT /translation="MGKTLVKGLHLLERLAASPEPMGITELAADLDLVQSNVHRLLQTL FT MESGYVQQDALTRRYRCTMRLWEMGTQIADRMDLSRIARPHMQALVKQSQETVHLAILD FT GADVLYIDKIDSPQPVRSYTRVGGRAPAYCTGTGKMLLAYCDDLAAALPAKLVKHTARS FT IASHAALKAELRRVREEGFSENAGEWREDVYGMGAPLFDATGKVSAAIGISGPLARMDA FT AVVARVRPMLQETARIISRELGYRG" FT misc_feature 716480..717028 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 8.3e-54" FT CDS 717439..718329 FT /transl_table=11 FT /gene="dapA" FT /locus_tag="BPP0679" FT /product="dihydrodipicolinate synthase" FT /EC_number="4.2.1.52" FT /note="Similar to Escherichia coli dihydrodipicolinate FT synthase DapA or B2478 SWALL:DAPA_ECOLI (SWALL:P05640) (292 FT aa) fasta scores: E(): 6.6e-20, 30.37% id in 270 aa, and to FT Brucella melitensis dihydrodipicolinate synthase Bmei1301 FT SWALL:Q8YG60 (EMBL:AE009568) (307 aa) fasta scores: E(): FT 9.5e-27, 34.82% id in 290 aa" FT /protein_id="CAE40088.1" FT /translation="MLISARTLRGIITATPTPFTREGGVDREVLRSHIEFLIGRGAAGL FT APLGGTGEYPALCARERADVVRWTVEAARGRVPVVAGVLATGYEDAVQAGLAAREAGAD FT ALMVVTPYYALAGDAGVRAYFERYRAAVDLPIVLYEIPRRTNVELRAETIAAMAGDGTI FT VGIKYSGSDFAKLTRLIHLAGDTLAVLSGEEPLFPAAVALGAVGGVLAMSNLDPAPWAR FT IQSLVESGEMAQALQLHHRQGALADAVYSEMNPVGLKAALQLKGFAFGEARLPLQPAGP FT QTLLRLQQAFEALES" FT misc_feature 717457..718323 FT /note="HMMPfam hit to PF00701, Dihydrodipicolinate FT synthetase family, score 1.1e-59" FT CDS 718330..719565 FT /transl_table=11 FT /gene="aatB" FT /locus_tag="BPP0680" FT /product="aspartate aminotransferase" FT /EC_number="2.6.1.1" FT /note="Similar to Rhizobium meliloti aspartate FT aminotransferase B aatB SWALL:AAB2_RHIME (SWALL:Q06191) FT (410 aa) fasta scores: E(): 1.8e-61, 46.07% id in 395 aa, FT and to Ralstonia solanacearum probable aspartate FT aminotransferase a protein AatA1 or Rsp1232 or Rs03176 FT SWALL:Q8XQJ3 (EMBL:AL646083) (404 aa) fasta scores: E(): FT 3e-62, 49.48% id in 386 aa" FT /protein_id="CAE40089.1" FT /translation="MNTISDSAAVAAGRRVAARMARVTTSKIYLAIAKVADMQAQGMQV FT ASLTAGEPDFDTPAHVIEAAVQAMRGGDTHYTPVRGSLAMREAVRQKFQRENGLAFRDE FT EVMVGTGSKQVIANALAVTLETGDEVLLPVPYWAAYTGMVYAAGGVPTFVGTRAEDGYK FT LTPQALRAALGPRTRWVILNTPSNPSGLVYGSDELRALGEVLRERPDVLILTDEIYEHL FT NYTAEPPASLRKLCPDLAERIVVVNGVSKAYAMTGWRLGFAGGPADIIEAMANLQAQTT FT LAPCSISQAAAVAALNGPRESIDAMAAAYRRRRDLVMQIAGGQSGVRLQRPDGAFYAML FT DLSEALAGGERFRGDPEPDQAFCEWLLETRHVAAVPGSVFGAPGSVRISFATDEQTIER FT GLTGLLDAAAHC" FT misc_feature 718600..719553 FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II, score 3.3e-55" FT misc_feature 719071..719112 FT /note="PS00105 Aminotransferases class-I FT pyridoxal-phosphate attachment site." FT CDS 719650..720480 FT /transl_table=11 FT /locus_tag="BPP0681" FT /product="probable solute-binding periplasmic protein" FT /note="Similar to Escherichia coli cystine-binding FT periplasmic protein precursor FliY or B1920 FT SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): FT 5.1e-23, 30.64% id in 248 aa, and to Salmonella typhi FT cystine-binding periplasmic protein FliY or Sty2162 FT SWALL:Q8Z5S8 (EMBL:AL627272) (266 aa) fasta scores: E(): FT 1.1e-23, 32.25% id in 248 aa" FT /protein_id="CAE40090.1" FT /translation="MNAVIRKMPAMLKWLMAVPLALGLAHAHAETVLEKARAKNEIRIA FT TSDSLKPWGYMDDTNKPIGFNLDVSREMGKRMGFGKVTFVTDSYKNFISGLNADRYDMV FT VAILTPTEERRKSADFSNPYMVVSKNIFVRDDNTSIRSLEDLAGKRLGVAAGTTDEAWA FT RQHVKDAQIRVYDNFFLALQDLAIGRVDARITDRVTGMTAAKEGRFPVKIAGPDLSQDI FT GAIAYKKGQDDLAAIVNKVIQEMVDDGSLNEISRKWLAGIEMGEELKKLPKDAR" FT misc_feature 719650..719736 FT /note="Signal peptide predicted for BPP0681 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.735 between residues 29 and 30" FT misc_feature 719773..720432 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 4.5e-59" FT CDS 720477..721127 FT /transl_table=11 FT /locus_tag="BPP0682" FT /product="putative permease component of ABC transporter" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi putative ABC-type amino acid transporter, permease FT component yecs or stm1952 or sty2160 SWALL:Q8XET2 FT (EMBL:AE008786) (222 aa) fasta scores: E(): 3.1e-34, 46.47% FT id in 213 aa, and to Escherichia coli O157:H7 putative FT transport system permease protein YecS or Z3006 or Ecs2656 FT SWALL:Q8XBC8 (EMBL:AE005414) (222 aa) fasta scores: E(): FT 1.8e-33, 44.34% id in 212 aa" FT /protein_id="CAE40091.1" FT /translation="MIELLHKAAPIIQGALLMTLLLGLSSAVLGTALGLVLALFRLSPV FT APLRWLAFWYVSIFRGTPLLLQLLLIYFGLPHYGIELEPVPTAILALLLCSAAYLSENF FT RSGILGVDRGQIEAAQSLGMGAARSLFRIILPQAIRIAAPTMGTRYIALMKDTSLASTI FT TVVKLTKMAEQIGSNTFRYMEMFIIAGALYWVINQMLTFIQVWVESKLGKGVA" FT misc_feature 720477..720566 FT /note="Signal peptide predicted for BPP0682 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.937) with cleavage site FT probability 0.645 between residues 30 and 31" FT misc_feature join(720519..720587,720624..720692,720735..720803, FT 721029..721097) FT /note="4 probable transmembrane helices predicted for FT BPP0682 by TMHMM2.0 at aa 15-37, 50-72, 87-109 and 185-207" FT misc_feature 720795..721019 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 1.2e-13" FT misc_feature 720798..720884 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 721127..721903 FT /transl_table=11 FT /locus_tag="BPP0683" FT /product="putative ATP-binding component of ABC FT transporter" FT /note="Similar to Agrobacterium tumefaciens octopine FT permease ATP-binding protein p occP SWALL:OCCP_AGRTU FT (SWALL:P35117) (262 aa) fasta scores: E(): 5.5e-41, 53.2% FT id in 250 aa, and to Yersinia pestis putative amino-acid FT ABC transporter Ypo1848 SWALL:Q8ZF70 (EMBL:AJ414150) (253 FT aa) fasta scores: E(): 1.6e-40, 54.87% id in 246 aa" FT /protein_id="CAE40092.1" FT /translation="MQHDQAAGAPVVQVEGLRKSFGANAVLKGVDLTIRRGEVVVMGPS FT GSGKTTFIRSLNFLEVPDEGAITICGTQVAVQAGAGLKREQRRRVREIRQKTAMVFQSF FT NLFSHMTVIKNIIEGPVQVKGAARDQAIEQARALLRQVGLAEKENEYPSRLSGGQKQRV FT AIARALAMKPEVIFFDEPTSALDPELRDEVLSVMRKLADEGMTMVVVTHEVRFARDVAD FT RVIFMEGGVVLEDAPSASFFDAPASERIRQFLRRVQ" FT misc_feature 721235..721816 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.2e-60" FT misc_feature 721253..721276 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 721589..721633 FT /note="PS00211 ABC transporters family signature." FT CDS 721900..723105 FT /transl_table=11 FT /locus_tag="BPP0684" FT /product="putative peptidase" FT /note="Similar to Ralstonia solanacearum putative hippurate FT hydrolase protein HipO or Rsc2871 or Rs00232 SWALL:Q8XVG0 FT (EMBL:AL646072) (396 aa) fasta scores: E(): 7.6e-64, 51.2% FT id in 375 aa, and to Pseudomonas aeruginosa probable FT hydrolase pa2922 SWALL:Q9HZS5 (EMBL:AE004718) (389 aa) FT fasta scores: E(): 5e-54, 46.82% id in 378 aa" FT /protein_id="CAE40093.1" FT /translation="MTAGARPGWAADPLVEAVGRETGELMRGIRHDLHAHPELSFEEHR FT TAGRVRACLQEWGIPVLDGLGETAVVGVLRADMDALPIHETNTFGHASRHAGRMHACGH FT DGHTAMLLGAARYLQRHPDFDGTIYLIFQPAEENGRGARAMIEAGLFRDHPMQAVFGLH FT NWPGLAAGKFALTAGPIMASSSRVKVTYTGKGGHAALPEQAIDPVAAVAALHQALQTVV FT TRNTAAHDSVVLSITQLGGSDNHCVIPDQAWLAGSLRTLSPAVLERTCARIRDIAQGVA FT AAFSCAARIEIEHAVPATINDAGATALCRDAIVQWLGPKWLNDGFIPTMGAEDFAFMLQ FT ALRGCYLMLGNGGGREGETATVCGLHNPGYDFNDEIAAVGAAYWVRLAGHCLPRGGAGP FT LA" FT misc_feature 721963..722880 FT /note="HMMPfam hit to PF01546, Peptidase family FT M20/M25/M40, score 2.7e-26" FT CDS 723178..723975 FT /transl_table=11 FT /locus_tag="BPP0685" FT /product="probable transcriptional regulator" FT /note="Similar to Rhodococcus opacus putative regulator of FT catechol degradative operon CatR SWALL:O33539 (EMBL:X99622) FT (256 aa) fasta scores: E(): 1.2e-19, 29.13% id in 254 aa, FT and to Alcaligenes eutrophus hypothetical 30.8 kDa protein FT SWALL:Q9L789 (EMBL:AF225972) (279 aa) fasta scores: E(): FT 2.4e-23, 37.25% id in 255 aa" FT /protein_id="CAE40094.1" FT /translation="MASKKAAGEADKDHLFVNSVAKAFRLLEAFDKSRPMSGFSQAARE FT IGMEKSAAQRAAHTLWRLGYLDKVGRDGEYRLSRRCLDIGQRYLETNRLVVCTNPYLKF FT LRRKTNASVNLAMLDGTDTVFPVRYTSQEMLNNDLGDRARIPAYCTATGIAIFSAMPDE FT AVREVLERSDLKPLMPNSIWQMDRIMERVESARRDGYVLGVEEDFASDITIACPISDPA FT TGDVAAIGVSYSSEVTAVEQVVQDWCPLVMSTAREVTARLAES" FT misc_feature 723400..723960 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 4.6e-21" FT CDS 724013..725284 FT /transl_table=11 FT /gene="amaB" FT /locus_tag="BPP0686" FT /product="N-carbamoyl-L-amino acid amidohydrolase" FT /EC_number="3.5.1.-" FT /note="Similar to Bacillus stearothermophilus FT N-carbamoyl-L-amino acid amidohydrolase AmaB FT SWALL:AMB2_BACST (SWALL:Q53389) (409 aa) fasta scores: E(): FT 1.9e-43, 40.2% id in 383 aa, and to Caulobacter crescentus FT N-carbamyl-L-amino acid amidohydrolase Cc2603 SWALL:Q9A561 FT (EMBL:AE005928) (427 aa) fasta scores: E(): 4.3e-60, 48.11% FT id in 397 aa" FT /protein_id="CAE40095.1" FT /translation="MTAAFASLGQTIVEQAARLASHSDMEGGLTCAYLTPAHRAAQAQL FT AQWMEAAGMAVRIDAIGNVIGRYAADPAVPAPRVLMTGSHFDTVRDGGRYDGRLGILLP FT VAVAGALRDAGVRLPYHLDVVAFAEEEGLRFKTSFLASGVLAGSFDPALLARQDADGVT FT LAQALAASGLPGAGDPAALRAAALDPATLLGFVEVHIEQGPVLLHHGLPLGVVTQIAGS FT SRFMARVEGMAGHAGTTPMNLRQDAGAAAAEMVLLVESRCSQVPTLVGTVGQLQVPNGS FT GNVIPGVCQFSIDIRAAEDPVREAAVADVRAGIEQIARRRGVRVSLDAVPPVGSVPCAR FT WLMDQFGAALSEAGLAVHELPSGAGHDAMVMQRIADVAMLFVRCGNGGVSHNPLETLSA FT EDAQQAAEVFAAFLRRFAPRGSGR" FT CDS complement(725281..726555) FT /transl_table=11 FT /locus_tag="BPP0687" FT /product="probable amidase" FT /note="Similar to Bradyrhizobium japonicum malonamidase E2 FT SWALL:Q9ZIV5 (EMBL:AF012735) (414 aa) fasta scores: E(): FT 2.7e-39, 37.67% id in 422 aa, and to Rhodococcus sp FT enantiomerase-selective amidase AmdA SWALL:Q53116 FT (EMBL:M74531) (462 aa) fasta scores: E(): 7.4e-21, 31.73% FT id in 438 aa" FT /protein_id="CAE40096.1" FT /translation="MQPLHLLGLDEARERLMAGACDSVDLVQACLDRIAAREEQIRAWA FT WVDATGALRKARAMTGARPDPRRPLAGLPIAVKDIIDTADMPTAYGSPIYAGHRPAWSA FT YCVAAIETAGGIILGKTATSEFAHSAPPATRNPHAPQHTPGGSSGGSAACVADFMAPAA FT LATQTGGSTIRPAAFCGVVGYKPSLGLIDRTGVKPMAESLDTVGLMARAVADIQLLAGV FT LAGVPAAPPGSAAPRIGLYRTPHWERIDARSRDALLARLRHLERHGARVAEVPDLPALH FT PLYQDQRDIMNQQASRALLHEYRQHREQLSPALRAALEAGRACSPGALRAAWQRTRRAR FT RAYAELWADYDLIVTPAALGAAPAGIASSGDSLLNRNWSLLGVPTLSLPNGADPRGLPL FT AMQLAGSHGGDAALLGWARWIEAAA" FT misc_feature complement(725314..726483) FT /note="HMMPfam hit to PF01425, Amidase, score 3.6e-83" FT misc_feature complement(725740..725784) FT /note="PS00616 Histidine acid phosphatases phosphohistidine FT signature." FT misc_feature complement(726193..726216) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(726564..727490) FT /transl_table=11 FT /locus_tag="BPP0688" FT /product="putative polysaccharide deacetylase" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1517 SWALL:Q9I3J6 (EMBL:AE004580) (308 aa) fasta FT scores: E(): 1.6e-63, 51.17% id in 297 aa, and to FT Caulobacter crescentus hypothetical protein Cc2605 FT SWALL:Q9A559 (EMBL:AE005928) (304 aa) fasta scores: E(): FT 1.7e-59, 49.15% id in 295 aa" FT /protein_id="CAE40097.1" FT /translation="MTMQTDRSLLTRRDFVGYGSTPPDPQWPGQARLALNIVVNYEEGS FT EASFEDGDGRSELGLTEVTGSSFQGRDLAAESMFEYGSRVGIWRVLRLLRERGMTATFF FT ACAQALERNPAVAQAIRAGGYDVCCHGWRWTPLQALSEAQEREEMQRAVASIERTTGQA FT PAGWYCRYAPTVNTRKLVLEQGSFLYDSDSYNDELPYWVDAGDRHHLVIPYTQAHNDAK FT FVRSGIATADDFFAFLRDSFDMLYAEGATQPKMMSVGLHMRLVGHPGRAAGLARFLDHV FT AAHERVWVCRRLDIARHWHGLHRPAAR" FT misc_feature complement(726864..727271) FT /note="HMMPfam hit to PF01522, Polysaccharide deacetylase, FT score 5.9e-05" FT CDS complement(727487..727978) FT /transl_table=11 FT /gene="allA" FT /gene_synonym="glxA2" FT /locus_tag="BPP0689" FT /product="putative ureidoglycolate hydrolase" FT /EC_number="3.5.3.19" FT /note="Similar to Escherichia coli ureidoglycolate FT hydrolase AllA or GlxA2 or B0505 SWALL:ALLA_ECOLI FT (SWALL:P77731) (160 aa) fasta scores: E(): 1.5e-08, 37.17% FT id in 156 aa, and to Pseudomonas aeruginosa hypothetical FT protein Pa1514 SWALL:Q9I3J9 (EMBL:AE004580) (169 aa) fasta FT scores: E(): 7.9e-10, 33.53% id in 167 aa" FT /protein_id="CAE40098.1" FT /translation="MSSMYLSASTLSADAFSQYGEVVENRGDTAKRPLSTPFGSARQGV FT TLGFTVNRLHRQPLDGIRVRTLERHPHSAQTFIPLVPSRHVVVVGLSGPDGALALPTLR FT AFVTNGRQGVSYRTGVWHYAFTAIDTDSQVAVILGKTGRDDDTEYTELDQDALVVFHEE FT " FT CDS complement(727995..729287) FT /transl_table=11 FT /locus_tag="BPP0690" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens putative FT transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677) FT (416 aa) fasta scores: E(): 1.1e-51, 39.33% id in 422 aa, FT and to Rhizobium meliloti hypothetical protein Ra0081 or FT Sma0151 SWALL:Q930W3 (EMBL:AE007202) (866 aa) fasta scores: FT E(): 5.4e-45, 37.62% id in 388 aa" FT /protein_id="CAE40099.1" FT /translation="MLLGALYFGGLVLFLMAGIHVASAIFMTAVVSDWMSMQVLPSMIG FT NTMWSTMNKFLLVAIPLFILLGEILTRSGVADRMYKALAAWLQWLPGGLLHTNIATCAL FT FAATSGSSVATSATVGTVALPTLQRLGYRERLVLGSIAAGGTLGILIPPSINMVVYGAL FT AEVSVGKLFAAGIVPGIIVLLLMMAVIVIMALLGKVAPDNEKLIIPLAMRLKLLIDVLP FT VVFIFGLVMGGIYLGIATPTEAAALGVVGAIAIAAANRTLSVAMLHAAFLSALRTTAMV FT VLVVTTAFVLNFSLSLAGIPQALSEYIGQLGWSPTATIWVLVAFYLILGCFLEAIAMMV FT TTVGVVVPLIVSLGFDPLWFGIFMTMMMELALITPPVGLNLFVAQNIRLSRGGISDVYI FT GVLPFAFAMMVFVTLLIYFPQIALWLPNRLF" FT misc_feature complement(join(728031..728096,728136..728201, FT 728232..728282,728289..728354,728385..728450, FT 728490..728555,728571..728636,728700..728765, FT 728811..728876,729075..729140,729201..729266)) FT /note="11 probable transmembrane helices predicted for FT BPP0690 by TMHMM2.0 at aa 7-29, 49-71, 137-159, 174-196, FT 217-239, 244-266, 279-301, 311-333, 335-352, 362-384 and FT 397-419" FT misc_feature complement(729192..729287) FT /note="Signal peptide predicted for BPP0690 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.806) with cleavage site FT probability 0.350 between residues 32 and 33" FT CDS complement(729287..729901) FT /transl_table=11 FT /locus_tag="BPP0691" FT /product="putative membrane protein" FT /note="Similar to Bacillus halodurans C4-dicarboxylate FT transport system Bh3392 SWALL:Q9K7G9 (EMBL:AP001518) (175 FT aa) fasta scores: E(): 3.6e-05, 29.63% id in 162 aa, and to FT Rhizobium meliloti putative permease protein Rb0286 or FT Smb20296 SWALL:Q92WP3 (EMBL:AL603642) (172 aa) fasta FT scores: E(): 0.081, 26.82% id in 164 aa" FT /protein_id="CAE40100.1" FT /translation="MTRLLELLCGALRAITNRACLAAGWALIALSVVIALNVLARKIFS FT FSLQGVDEYGGYCLAICASIGFSQAAYDRAHIRISVLTDLLPQRLRACSDVFALALLTS FT VALTLAVKATGVAYDSYSMQALATSALRTPLAIPQAMWAAALCWFGLVLATQLLHSLLL FT LARRDWGGINRNYGNPSVDEEVAEELRSANERMAGKLEGAH" FT misc_feature complement(join(729410..729475,729548..729613, FT 729686..729751,729782..729838)) FT /note="4 probable transmembrane helices predicted for FT BPP0691 by TMHMM2.0 at aa 21-40, 50-72, 96-118 and 142-164" FT misc_feature complement(729836..729901) FT /note="Signal peptide predicted for BPP0691 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.882) with cleavage site FT probability 0.771 between residues 22 and 23" FT CDS complement(729964..731010) FT /transl_table=11 FT /locus_tag="BPP0692" FT /product="putative extracellular solute-binding protein" FT /note="Similar to Rhodobacter capsulatus FT c4-dicarboxylate-binding periplasmic protein precursor DctP FT SWALL:DCTP_RHOCA (SWALL:P37735) (333 aa) fasta scores: E(): FT 1.7e-05, 25.17% id in 290 aa, and to Rhizobium meliloti FT hypothetical protein Ra0083 or Sma0157 SWALL:Q930W1 FT (EMBL:AE007202) (334 aa) fasta scores: E(): 4.1e-06, 25.94% FT id in 239 aa" FT /protein_id="CAE40101.1" FT /translation="MKAILQRSIALLALAAGMSSVACADEVKMRVLGWYGNQPQSQQVE FT RPFWKDLPKRSNGAFSANFRTIDELGLKGFESLRTLQSGAFDVVSFQISFVGGDAPVLM FT GADLPGAAFDFDQLQKNLDAYRPILEKELNDRFKAKLLTAWSFPFQILYCKGDIKTLDD FT LKGKKVRVSGTYTAKMMADLNAAGATLAGPEVYQGLMQGVVDCAITGSQYGNSNDWFEV FT AHSLSPIPLGGAGVVLQVARNAFWDKLSADQQAALSAEMKQLETALWDISRKGHEDGIN FT CNVGKQPCTGKPGKMQLVEPTEADVREVKQLLKTSIVPMWIEDCSKFSKTCGDDWFRTI FT GAAAGIAR" FT misc_feature complement(730039..730917) FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 2.5e-08" FT misc_feature complement(730939..731010) FT /note="Signal peptide predicted for BPP0692 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.796 between residues 24 and 25" FT misc_feature complement(730942..730974) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 731152..732057 FT /transl_table=11 FT /locus_tag="BPP0693" FT /product="putative LysR-family transcriptional regulator" FT /note="Similar to Caulobacter crescentus transcriptional FT regulator, LysR family Cc1621 SWALL:Q9A7U8 (EMBL:AE005837) FT (298 aa) fasta scores: E(): 8.1e-23, 32.65% id in 297 aa, FT and to Rhizobium meliloti putative transcriptional FT regulator, LysR family protein Rb1494 or Smb20582 FT SWALL:Q92TL7 (EMBL:AL603647) (306 aa) fasta scores: E(): FT 1.3e-22, 27.21% id in 294 aa" FT /protein_id="CAE40102.1" FT /translation="MNLRLIEIFRAVMQSHTTVGAARALQISQPAVSSAIRQLESQVGF FT TLFDRVGNRLSATEEAKILFRDSESIFLLSKALNHTVEELKNERLGQLRIVATPQLGHS FT VLPAAINDLLKQRPKVKVFFDVRRSYNVVEIIESRAADIGFAIALEPELEQKLHMLPVA FT RVQMVCLAPADHPLARRKSVTPQDISPYPLIGLELGSRLSPLVLNAFKQAGTPYRTAVE FT VRYSETACLLAQAGVGVTVVDLFSAMAQARHGGGLKIIPFKPAIEVEAFAVSAKNRVPS FT RLALLLVEETQKSIRRFQPA" FT misc_feature 731158..731337 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.2e-18" FT misc_feature 731200..731292 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 731407..732039 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.6e-39" FT CDS 732159..732545 FT /transl_table=11 FT /locus_tag="BPP0694" FT /product="putative exported protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc1215 SWALL:YC15_CAUCR (SWALL:Q9A8Y2) (153 aa) FT fasta scores: E(): 3.1, 28.69% id in 115 aa" FT /protein_id="CAE40103.1" FT /translation="MRLLPAMGALALLLHAPAAPAQDFDRHGHALVRDAQGWVYIDRAH FT RPVLRPFIYDNGPDYYEEGLARFVEHGRMGFHDEALNIVIPAEYDFVFPFQGGKARAGM FT DCRVQRHGEHGSVSCRRWTTLTRP" FT misc_feature 732159..732221 FT /note="Signal peptide predicted for BPP0694 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.807) with cleavage site FT probability 0.797 between residues 21 and 22" FT CDS complement(732542..733225) FT /transl_table=11 FT /locus_tag="BPP0695" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Brucella melitensis transcriptional FT regulator, GntR family Bmeii0281 SWALL:Q8YD96 FT (EMBL:AE009666) (238 aa) fasta scores: E(): 3.9e-13, 33.64% FT id in 214 aa, and to Rhizobium loti transcriptional FT regulator Mll6988 SWALL:Q987M8 (EMBL:AP003010) (220 aa) FT fasta scores: E(): 4.2e-13, 31.96% id in 219 aa" FT /protein_id="CAE40104.1" FT /translation="MSARSAPKSQTRSSTEISEEILRRIQSGRYLPGNSLSQYELASEF FT GTSRTPIREALRFLEARRAISLTDTGRAMVAIPSVRAIREAFEVRAELEGLAARLAVDW FT IEDKHLKLLAQHQKHYASTLRSRVRNERGSEWLQHNFDFHHLITELSHNERLLDMVSEL FT QSSSVSDVLGFASKMPPRLMEENIQQHEAIIAALTRRDGAAAREAMIEHVLRTMRLVID FT WMESR" FT misc_feature complement(733001..733177) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 2.9e-09" FT CDS 733497..733982 FT /transl_table=11 FT /locus_tag="BPP0696" FT /product="conserved hypothetical protein" FT /note="Similar to Clostridium acetobutylicum possible FT pectin degradation protein Cac3376 SWALL:Q97DU5 FT (EMBL:AE007834) (114 aa) fasta scores: E(): 0.66, 37.87% id FT in 66 aa, and to Thermoplasma volcanium hypothetical FT protein Tv0214 or Tvg0221806 SWALL:Q97C89 (EMBL:AP000991) FT (121 aa) fasta scores: E(): 1.5, 25.37% id in 67 aa" FT /protein_id="CAE40105.1" FT /translation="MSDIDPITSARILNPGGRGGPLTEAHQPMRAMHRDDIEWENLRYE FT GQFSKMMFHPVQDDRTIPNAGIVRYEKGSGHPLHNHYFAQIWYVLSGKFEIEGKVYGEG FT SMMFHPDPHYEYALNTLEDGEILYVQYMGPTTRQPAIYEGRFNMETRRPLEDESTAA" FT CDS 734082..734606 FT /transl_table=11 FT /locus_tag="BPP0697" FT /product="putative membrane protein" FT /note="Similar to Anabaena sp. hypothetical protein Alr3026 FT SWALL:Q8YSQ8 (EMBL:AP003591) (184 aa) fasta scores: E(): FT 9e-13, 31.97% id in 172 aa, and to Brucella melitensis FT tripartite transporter, small subunit Bmei1581 SWALL:Q8YFE1 FT (EMBL:AE009593) (182 aa) fasta scores: E(): 1.7e-10, 32.09% FT id in 162 aa" FT /protein_id="CAE40106.1" FT /translation="MERLIQVLDLFSDRMGRLASMVMLPVLLVTFAVVVLRYVFGIGLI FT WLQDSYVWLTSVFFICMAGNTFLHDRHVRVELFYSRMTARKRALVNALGVLLLLWPTLF FT VTVQQSWRPIARSWRFLEALPNAGGLSFAYVHKSLVYVFCLVLFLQGLSLLLKSARTLA FT GARGVAPEASP" FT misc_feature join(734154..734222,734232..734285,734346..734414, FT 734496..734549) FT /note="4 probable transmembrane helices predicted for FT BPP0697 by TMHMM2.0 at aa 5-27, 31-48, 69-91 and 119-136" FT CDS 734603..735958 FT /transl_table=11 FT /locus_tag="BPP0698" FT /product="putative membrane protein" FT /note="Similar to Synechocystis sp. hypothetical protein FT Sll1103 SWALL:P74224 (EMBL:D90913) (445 aa) fasta scores: FT E(): 6.8e-66, 44.98% id in 449 aa, and to Anabaena sp. FT hypothetical protein Alr3027 SWALL:Q8YSQ7 (EMBL:AP003591) FT (445 aa) fasta scores: E(): 2.2e-61, 45.84% id in 445 aa" FT /protein_id="CAE40107.1" FT /translation="MSLSDVLCLLMFATVMGTMMFGFPVAFTLSGVGVAFALLGSALDV FT FEWRTMGGVMGRLYGIMSNEMLVAIPLFVFMGIMLEKSKAAERLLVTTSSLFGSLSGGL FT AFTVVMVGTLLSAATGMVAATVATLALISVPAMRRAGYQPSYMAGSICASGTLSQLIPP FT STVLILIGDMLRGVTPPDRPGGPVTVSDLFAGVVLPSVLLVVLFLGYVLYRALLRPDTC FT PPLPRSAGQRVGLRQLLVDAVAPLALIIAVLGSILAGIATPTESAAVGAMGAVLIALLY FT KALSWPVLKQVCMATGHLVAMVFTIMIGAAIFSLVFKGLGGEHLARELLSSVPGDLYGA FT LLLVLLIAFVLGFFLDSFEIIFVVIPIFGPPLLSLGVDPLLFGVLLAVTLQTSYLTPPF FT GFAIFYLQGVYKDIGAETAYRGVLPYIALQVGAVAALLSFPALATWLPTVLY" FT misc_feature 734603..734713 FT /note="Signal peptide predicted for BPP0698 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.797 between residues 37 and 38" FT misc_feature join(734663..734731,734774..734842,734867..734935, FT 734945..735013,735047..735115,735173..735241, FT 735317..735385,735398..735466,735485..735553, FT 735611..735667,735680..735748,735761..735829, FT 735863..735931) FT /note="13 probable transmembrane helices predicted for FT BPP0698 by TMHMM2.0 at aa 21-43, 58-80, 89-111, 115-137, FT 149-171, 191-213, 239-261, 266-288, 295-317, 337-355, FT 360-382, 387-409 and 421-443" FT CDS 735999..737123 FT /transl_table=11 FT /locus_tag="BPP0699" FT /product="extracellular solute-binding protein" FT /note="Similar to Anabaena sp. extracellular solute-binding FT protein All3028 SWALL:Q8YSQ6 (EMBL:AP003591) (364 aa) fasta FT scores: E(): 3.4e-44, 37.32% id in 359 aa, and to FT Synechocystis sp. hypothetical protein Slr1962 SWALL:P74100 FT (EMBL:D90912) (370 aa) fasta scores: E(): 1.1e-40, 35.44% FT id in 364 aa" FT /protein_id="CAE40108.1" FT /translation="MNPNSDNKRRTLLRAATVGGLGAVLAGAAPPALAKPRVRWRMGMA FT WTRSAPGYTTPVVALADFLDKATGGAFQIEVFGAGDLVPAMQTFDAVLDGTLDCGHGYA FT SYWSGKSIAMNLVMSMPFGTTAQEKNAWLQYGGGQALADKVYERLGAKFFPLGNCGVQP FT MGWFRKEINSIDDFKGLKFRVSGLPGEVLRECGVAVVGMPLGEVLQAMQSGAVDACELT FT GPYIDTTLGIQRIAKNYYFPGWHEPEGQFDLFINLDAWNKLSPEYKELVRVGAYYANGV FT MLNELVAKNGKAFEDLRTEHGVTARLLPDDVLKRMHEITNDLLAGAYERDPLARELRDS FT LRAFLGAAAPYSEYSELLFMQARANLSGRPRLGG" FT misc_feature 735999..736100 FT /note="Signal peptide predicted for BPP0699 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.952 between residues 34 and 35" FT misc_feature 736122..736991 FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 9e-53" FT misc_feature 736308..736331 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS join(737172..738137,738139..738669) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0700" FT /product="probable GntR-family transcriptional regulator FT (Pseudogene)" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa4165 SWALL:Q9HWL6 FT (EMBL:AE004833) (496 aa) fasta scores: E(): 3.9e-94, 54.63% FT id in 496 aa, and to Salmonella typhi putative GntR-family FT regulatory protein Sty3762 SWALL:Q8Z301 (EMBL:AL627279) FT (493 aa) fasta scores: E(): 6.3e-86, 48.36% id in 490 aa" FT /db_xref="PSEUDO:CAE40109.1" FT misc_feature 737265..737444 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 8.6e-14" FT misc_feature 738601..738621 FT /note="PS00290 Immunoglobulins and major histocompatibility FT complex proteins signature." FT CDS complement(738684..739976) FT /transl_table=11 FT /gene="glyA" FT /locus_tag="BPP0701" FT /product="serine hydroxymethyltransferase" FT /EC_number="2.1.2.1" FT /note="Similar to Rhizobium loti serine FT hydroxymethyltransferase 1 GlyA1 or Mlr8400 FT SWALL:GLA1_RHILO (SWALL:Q983B6) (437 aa) fasta scores: E(): FT 1.1e-98, 63.78% id in 417 aa, and to Hyphomicrobium FT methylovorum serine hydroxymethyltransferase GlyA FT SWALL:GLYA_HYPME (SWALL:P34895) (434 aa) fasta scores: E(): FT 4.3e-98, 62.61% id in 428 aa" FT /protein_id="CAE40110.1" FT /translation="MNDLLPAAAAPAGARALPLRHADPEIWRAVDAERQRQMHSIELIA FT SENFVSQAVLDAQGSVMTNKYAEGYPGRRYYGGCRHVDVAERAAIERARRLFGCEYANV FT QPHSGSQANQAVYLALLAPGDRILGLDLKAGGHLTHGARVNLSGKWFEALSYGVDPVSH FT RIDMDEVERTARRERPRLIIAGGSAYARVPDFARFRAIADATGALFVADMAHYAGLVAG FT GAFPSPVPFAHVTTTTTHKTLRGPRGGMILTDDADIARRIDAAVFPGLQGGPLMHVIAA FT KAVALGEALQPGFRAYARAVIDNARALCARLAEGGLSIVSGGTDCHLGVVDLRPWGLAG FT NAAERALEEAGITVNKNAVPGDAASPAVTSGIRVGSAACTSRGMGPAEFRQIGDLVLAV FT LGGLRDGGQAGGRDAVPARAAELSRRFPLPY" FT misc_feature complement(738789..739922) FT /note="HMMPfam hit to PF00464, Serine FT hydroxymethyltransferase, score 1.7e-240" FT misc_feature complement(739230..739280) FT /note="PS00096 Serine hydroxymethyltransferase FT pyridoxal-phosphate attachment site." FT misc_feature complement(739518..739556) FT /note="PS00213 Lipocalin signature." FT CDS complement(739973..741208) FT /transl_table=11 FT /gene="benE" FT /locus_tag="BPP0702" FT /product="benzoate membrane transport protein" FT /note="Similar to Acinetobacter calcoaceticus benzoate FT membrane transport protein BenE SWALL:BENE_ACICA FT (SWALL:P07775) (394 aa) fasta scores: E(): 7e-57, 41.55% id FT in 385 aa, and to Pseudomonas putida BenE SWALL:Q9L7Y0 FT (EMBL:AF218267) (399 aa) fasta scores: E(): 8.5e-65, 47.1% FT id in 380 aa" FT /protein_id="CAE40111.1" FT /translation="MHTPTAVLRPADFLAPIVAALISVLVNYGGTFVLVFQAAELAGLS FT AAQTTSWVWAVSIGVGVTGIALSWRYREPIITAWSTPGVAFLATVMPFTPYGEVIGAYL FT AAALGFVVLGLSGAFEKLVRMIPAGIAAGLLAGILLQFGINAFGGASADPLLVIALLVS FT YALLKRYTSRFAVVGILVIGLGLLAAQQRVDFAALHLSLAAPVFEMPRFSLHAMLGVAL FT PLFVITLTGQYMPGMLVLRNDGFKTSANPILVATGLGSLVMAPFGAHTFNVAAITAAIC FT TGRDAHEDPRKRYIAGLACGVFYILVGLFGVTLATLFMVLPKTFITTLAGLALLGTIGG FT SLASAMADARTRETALITFLATAANVTLLGVGGAFWGLVAGLAAHGLIHFRQPEPAAAR FT PALLSPTSQDTR" FT misc_feature complement(740048..741178) FT /note="HMMPfam hit to PF03594, Benzoate membrane transport FT protein, score 3.5e-165" FT misc_feature complement(join(740075..740140,740180..740236, FT 740252..740317,740381..740446,740507..740572, FT 740642..740698,740765..740830,740852..740908, FT 740924..740980,741002..741058,741104..741169)) FT /note="11 probable transmembrane helices predicted for FT BPP0702 by TMHMM2.0 at aa 13-35, 50-69, 76-95, 100-119, FT 126-148, 170-189, 212-234, 254-276, 297-319, 324-343 and FT 356-378" FT CDS 741447..741911 FT /transl_table=11 FT /locus_tag="BPP0703" FT /product="probable oxidoreductase" FT /note="Similar to Pseudomonas aeruginosa probable FT oxidoreductase Pa2379 SWALL:Q9I1A0 (EMBL:AE004664) (156 aa) FT fasta scores: E(): 3.2e-39, 65.33% id in 150 aa, and to FT Ralstonia solanacearum probable aldehyde dehydrogenase FT Rsc0626 or Rs01528 SWALL:Q8Y1R3 (EMBL:AL646060) (152 aa) FT fasta scores: E(): 1.6e-38, 68.24% id in 148 aa" FT /protein_id="CAE40112.1" FT /translation="MATLTINGKSQDVDAPDDMPLLWVIRDRLGMTGTKFGCGMALCGA FT CTVHLDGQPVRSCITPVAAAAGKRIVTIEAVGEDEVGRAVQQAWTEIGVPQCGYCQSGQ FT IMSATALIKSNPKPSDEDIDAAMSGNICRCGTYPRIRAAIKQVAVKGVAK" FT misc_feature 741456..741638 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain, score 2.7e-08" FT misc_feature 741558..741584 FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature 741660..741884 FT /note="HMMPfam hit to PF01799, [2Fe-2S] binding domain, FT score 6.7e-31" FT CDS 741908..744259 FT /transl_table=11 FT /locus_tag="BPP0704" FT /product="putative aldehyde dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable aldehyde FT dehydrogenase Pa2378 SWALL:Q9I1A1 (EMBL:AE004664) (771 aa) FT fasta scores: E(): 6.7e-179, 60.91% id in 765 aa, and to FT Caulobacter crescentus isoquinoline 1-oxidoreductase, beta FT subunit Cc2269 SWALL:Q9A626 (EMBL:AE005897) (724 aa) fasta FT scores: E(): 1.6e-57, 39.34% id in 760 aa" FT /protein_id="CAE40113.1" FT /translation="MNAFDRFAPSHAALADEPCGLAPASPARREWLRTAAALTGLVLVV FT GAGGVVRAAGEAAKEAKKYGGDGMPHGTVDDPLVFVSIAADGLVTIVAHRAEMGTGVRT FT SLPMVVADELEADWNRVRVIQAPGDEPRYGNQDTDGSRSTRHFFLPMRRVGAAARAMLE FT AAAARQWGVPVAEVAARQHEVVHEKSGRKLGYGELATAAAALPVPAEAALRLQQPAQFR FT YIGKPGARSVDIEDIVTGKTHFGIDTRLDGMLYASVARPAVLGGKVKAYKAEAALKVPG FT VVKVVELPAGPTPPVFAPLGGVAVIASDTWAALKGRQALEIEWDDGPHASYDSEAFRKT FT LSEGAGKPAKPVRNDGDAMQALAGAARRIEAEYYLPHLAHATMEPPAATARLADGKCEV FT WACVQSPYGTRENVARHLGLDIGAVTVHQTLLGGGFGRKSKSDFVVEAALLSKAMDGKP FT VKVTWSREDDLANDYFHTVSVERLEAGVDAQGKAVAWLHRTAAPTIGSTFAAGAEGQQP FT FELGMSAINIPFDIPNFRVESVPVPAHTRIGWFRSVSNIPHAFAVQSFVAEMAHALGRD FT PRDYLLELIGPPRRIAPAAMSDGWNYGESPELYPLDTGRMRHVIEVATGAAGWGRKLAA FT GRGLGVAVSYSFVTYIATVVEVEVGQDGAIAVPRVHVAVDCGPQVHPDRVRAQVEGACI FT MGLSLATRSEISFAQGRATQTNFHQYEVARMPEAPREIVVHLVEHGFDVPLGGVGEPAV FT PPFAPALCNAIFAATGKRIRALPIRDQLKA" FT misc_feature 742622..742897 FT /note="HMMPfam hit to PF01315, Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain, score 0.03" FT misc_feature 742901..744094 FT /note="HMMPfam hit to PF02738, Aldehyde oxidase and FT xanthine dehydrogenase, molybdopterin binding domain, score FT 3.3e-07" FT CDS 744328..745278 FT /transl_table=11 FT /locus_tag="BPP0705" FT /product="putative LysR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative FT transcriptional regulator protein Rb0123 or Smb20123 FT SWALL:Q92X39 (EMBL:AL603642) (298 aa) fasta scores: E(): FT 6e-28, 34.84% id in 287 aa, and to Agrobacterium FT tumefaciens transcriptional regulator, LysR family Atu4264 FT or Agr_l_1195 SWALL:AAK89175 (EMBL:AE009355) (298 aa) fasta FT scores: E(): 1.5e-22, 30.71% id in 293 aa" FT /protein_id="CAE40114.1" FT /translation="MPSPSRSPATAYKKAPSLKGLPSIRQLRAFVAVYYTGTLSAAAEA FT LSLTQPAVTILLKELEEKLGVRLFDRTTRALRRTTAALEAIAYAERVLGELDALSASMT FT DLADVRRGRLRVAATSTVAQTLLPKVVRRFLDLHPGVKLSVDDCAPAMFAEHVLSEQVD FT LGVGTLESAVPGLEQHQFLGDHLCAVATDAAFGHGRPMTWKQLSGLPVIVVQAGYGVRR FT SIERAAQQAGVELQVAFEVSLLTTALAMAASGLGVAVVPQSILAHTHYTNLVARRLVRP FT VVLRSTSVVFKEARALSPSAQAFAELLRREFSSPA" FT misc_feature 744397..744576 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 5e-19" FT misc_feature 744439..744531 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 744646..745266 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 6.8e-45" FT CDS complement(745275..745985) FT /transl_table=11 FT /locus_tag="BPP0706" FT /product="putative transcriptional regulator" FT /note="Similar to Streptomyces coelicolor putative FT transcriptional regulator Sco6246 or Scah10.11C FT SWALL:Q9RKU6 (EMBL:AL132824) (270 aa) fasta scores: E(): FT 4.6e-09, 30.56% id in 265 aa, and to Pseudomonas aeruginosa FT probable transcriptional regulator Pa3508 SWALL:Q9HYA1 FT (EMBL:AE004771) (277 aa) fasta scores: E(): 4.7e-09, 32.28% FT id in 223 aa" FT /protein_id="CAE40115.1" FT /translation="MPRYPVRPADHAQSAEGGVTAVDRALTLLTAFRVTDQTLSLSELS FT ERASLVPSTVLRLLASLMHFGFVLRRPDGRYALGPAAARLNRVYAASFNLQDVVLPALQ FT ELVGQTRESASFHVRQGAHRLVLYRVSSPQPLSDQSHTGDLLPLDRGTGGHVLMAFSDT FT PGEFYEALRLRGYMASPVSDRSPELAGISAPVFDAQGMLAGALTLTMPVHRYKDAHIPV FT LREAAARLSAALGA" FT misc_feature complement(745287..745760) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 4.8e-09" FT CDS 746078..748471 FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0707" FT /product="hypothetical protein (pseudogene)" FT /note="Due to a large deletion event, this CDS is the FT result of a fusion of two separate CDSs. The N-terminal FT region is similar to Pseudomonas mevalonii FT hydroxymethylglutaryl-coa lyase mvaB SWALL:HMGL_PSEMV FT (SWALL:P13703) (301 aa) fasta scores: E(): 2.3e-32, 38.98% FT id in 277 aa. The C-terminal region is similar to FT Salmonella enterica subsp. enterica serovar Typhimurium FT VrgS protein SWALL:Q93IR3 (EMBL:AJ320483) (729 aa) fasta FT scores: E(): 3.2e-37, 41.97% id in 355 aa." FT /db_xref="PSEUDO:CAE40116.1" FT misc_feature 746111..746959 FT /note="HMMPfam hit to PF00682, HMGL-like, score 9.7e-42" FT CDS 748488..748901 FT /transl_table=11 FT /locus_tag="BPP0708" FT /product="putative exported protein" FT /note="Similar to Brucella melitensis hypothetical protein FT Bmeii1079 SWALL:Q8YB22 (EMBL:AE009740) (164 aa) fasta FT scores: E(): 2.8, 27.11% id in 118 aa" FT /protein_id="CAE40117.1" FT /translation="MGSTAWWIAGTLATLAAVGLVALLVRGGARPYEAERALAAQLART FT GRPAQAEVLALDRQPGGELYAAPMKLALRYADAMGRARQAELHVYIDSELLVNFMPGQA FT IHVRLDPSDAARIAVDRERSPTEIPAAWRRRHP" FT misc_feature 748488..748568 FT /note="Signal peptide predicted for BPP0708 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.732) with cleavage site FT probability 0.195 between residues 27 and 28" FT misc_feature 748500..748568 FT /note="1 probable transmembrane helix predicted for BPP0708 FT by TMHMM2.0 at aa 5-27" FT CDS 748898..751447 FT /transl_table=11 FT /locus_tag="BPP0709" FT /product="putative exported protein" FT /note="The C-terminal reggion of this CDS is similar to FT Caulobacter crescentus pentapeptide repeat family protein FT Cc0587 SWALL:Q9AAL0 (EMBL:AE005733) (371 aa) fasta scores: FT E(): 2.9e-09, 33.76% id in 311 aa, and to Methanosarcina FT acetivorans hypothetical protein Ma2354 SWALL:AAM05743 FT (EMBL:AE010924) (337 aa) fasta scores: E(): 1.8e-09, 26.31% FT id in 323 aa" FT /protein_id="CAE40118.1" FT /translation="MKIVKPLRLGLLSRPYRMRGRQRLGLAVFALATLDEQALLQPEAD FT LWSLAGEALGEDGVLDLAVPKPCAEFLVSGAAYTAHQQDRTACMARVRVGELEKTLAVF FT GERYWLDGKPTPPAPFEAMPLDWAHAFGGPEYADNPHGRGAGDERIAGVRTRRLPNVEP FT ARGRMQRPDQRPEPAGFGPVSPLWPRRFARAGQYHESWLDDGFPGFLDTLDPHFFNAAA FT PDQWWPGQPELAAGAPYALWNLHPRLACQQGALPRWRARCLLRRAGETALEDVALRLTT FT AWFFPDRERLLLIYHGATDIAQDDGADIELAMPALDAADAPRPLAHYEAVLAQRLDAQD FT GALHALRDKDLLPAQALGPWDALQAANPMEQPFAVNQRARGAAIRAQLGEQARAHGVDP FT RAYEPQPAPMPAAPQLDDLPDIARHMRQAAQEARIDALHARRRMAEALQARGAELPPAM FT GAAALAAAADGAGRGGPPSLHNHPALATLQELARAQPLGSDADRLDAGSVGARLREAQQ FT QLGRLYLHAAHHQPPAEAARPARAARLRRRVQALMAGSRDLAGLDLTGADLSGLDLRGA FT RCVGTWMEGVDLSGALLDDADLSQAVLARAHAEGGSWRRAVLAGANLGQAALDGVDLAG FT ARLSSPVLDGIVLVDCALSASRWNDCHLAGAWLERCRFDQAELDTVTFWQGTLLRETGF FT AAARLARVTWLDCELDGLDFAGARLRRCAWVQSQCGAAPNWAGAELQTCCVVETDMPHA FT VFAGATLRECSLRDTVLDHADFTGAALWRCDLSQASLAEADLPGALLQKATLTHADLRG FT ANLFRADLGLAVLDDTSDTRGAYTHLANTRPRARHGR" FT misc_feature 748898..749011 FT /note="Signal peptide predicted for BPP0709 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.690) with cleavage site FT probability 0.455 between residues 38 and 39" FT misc_feature 750545..750667 FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 2.1e-05" FT misc_feature 750683..750802 FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 0.0021" FT misc_feature 750803..750922 FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 0.43" FT misc_feature 750956..751075 FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 1.5" FT misc_feature 751139..751258 FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 9.4e-05" FT misc_feature 751259..751378 FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 1.1e-06" FT CDS join(751437..752276,752275..752496) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0710" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Similar to Caulobacter crescentus pentapeptide FT repeat family protein Cc0587 SWALL:Q9AAL0 (EMBL:AE005733) FT (371 aa) fasta scores: E(): 1.5e-15, 33.13% id in 338 aa, FT and to Synechocystis sp. hypothetical protein Slr1819 FT SWALL:YI19_SYNY3 (SWALL:P73709) (331 aa) fasta scores: E(): FT 6e-15, 28.17% id in 323 aa" FT /db_xref="PSEUDO:CAE40119.1" FT misc_feature 751506..751625 FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 1e-05" FT misc_feature 751701..751820 FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 0.67" FT misc_feature 751851..751970 FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 0.00075" FT misc_feature 752001..752120 FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 0.0039" FT misc_feature 752151..752270 FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 4.8e-06" FT variation 752269..752276 FT /note="(GC)4 in parapertussis; (GC)5 in bronchiseptica" FT misc_feature join(752283..752291,752293..752403) FT /note="HMMPfam hit to PF00805, Pentapeptide repeats (8 FT copies), score 0.24" FT CDS 752527..753432 FT /transl_table=11 FT /locus_tag="BPP0711" FT /product="hypothetical protein" FT /note="The C-terminal region of this CDS is similar to the FT C-terminal regions of Bacillus subtilis hypothetical FT protein YqcG SWALL:YQCG_BACSU (SWALL:P45942) (531 aa) fasta FT scores: E(): 1.4e-15, 54.81% id in 135 aa, and to that of FT Clostridium acetobutylicum uncharacterized protein, YqcG FT b.subtilis homolog, Cf-7 family Cac1640 SWALL:Q97IK0 FT (EMBL:AE007673) (377 aa) fasta scores: E(): 0.0018, 31.2% FT id in 125 aa" FT /protein_id="CAE40120.1" FT /translation="MFADCQLMGMDLAFPDICKTPPALLPIPYPNFALGPMGIPNVWNV FT LLMAMPAHNLLTTIALSNGDNPGIGMGLISQTVMAQARRITCVPNVLFGCIPATRLTGV FT TVQNTINTVGMRVVPSQLKVVLLGGGGGGGAAKAAKSAKAGKGPGARAGATARRGAGGK FT GGAAGKGGQGGGKAAGSGKSGGGKGAKPRKPGDDPRYRRGKFRKGVRDKAWDQEARRSK FT DGVVRDPVSGKKMKKDEPWDMGHKPGYEHRKHVRSAKERDIDRKQFLDEYNDPSHYRPE FT LPKSNRGHQGELKTDDYFGP" FT CDS 753473..754033 FT /transl_table=11 FT /locus_tag="BPP0712" FT /product="conserved hypothetical protein" FT /note="Similar to Bacillus subtilis hypothetical protein FT YqcF SWALL:YQCF_BACSU (SWALL:P45941) (192 aa) fasta scores: FT E(): 2.3e-18, 36.02% id in 186 aa, and to Ralstonia FT solanacearum hypothetical protein Rsp1132 or Rs05507 FT SWALL:Q8XQT6 (EMBL:AL646083) (192 aa) fasta scores: E(): FT 8.8e-17, 36.02% id in 186 aa" FT /protein_id="CAE40121.1" FT /translation="MARHALKVFGGTPVVHAYRHDQIDTLSIDMLAVDDSPDDGLVSYS FT TLGLFDLELRHDDGHPMATRVELCAEMPEDLQSWANVLATAAFGLMRSGQAVMPGSVLP FT DCVAEYYPDATVPHLYLCVPFSWQDGEFPRCDADGLLVNWLQAVPISETERQFIETAGP FT DAFEDELLEADPDIYDLSRPAVR" FT CDS 754606..755655 FT /transl_table=11 FT /locus_tag="BPP0713" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0082 SWALL:Q9I750 (EMBL:AE004447) (344 aa) fasta FT scores: E(): 1.4e-26, 35.89% id in 351 aa, and to FT Salmonella typhimurium and Salmonella enterica subsp. FT enterica serovar Typhimurium putative cytoplasmic protein FT Stm0266 or SciA SWALL:Q93IT5 (EMBL:AE008707) (351 aa) fasta FT scores: E(): 3.1e-14, 32.21% id in 357 aa" FT /protein_id="CAE40122.1" FT /translation="MPRMTTNMEFADLLKTLTPSLPCGEDLEYDADFLQLQQAAVGRSE FT QQFGATIIPAQAPDWRAVERLALGLLERTRDLRIIAYLTRAWTEMRGLPGYAEGVTLAA FT GTLEQYWDAVHPMLASGGEEDPMPRVNALASLGDPQGCVRGMRSACLLDDVHGRLSLRD FT AEALLDGGRSEADYPGGRTRLIENLRQARLRRDDAALAVGAAAGALRRIQQQATQRLGS FT AWCPDYAQALRALDALLRTWSDLDETAAAPAAAMPAEAHHAAPAPEPQPAPASWHDARI FT ATREDAMAMLAKVSAYFETHEPSHPAPYLIRRVQQLIPLDFHDILRNLAPQGLAQFEAW FT TAREAASQS" FT CDS 755698..756261 FT /transl_table=11 FT /locus_tag="BPP0714" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0083 SWALL:Q9I749 (EMBL:AE004447) (172 aa) fasta FT scores: E(): 4.2e-42, 72.12% id in 165 aa, and to FT Salmonella typhimurium and Salmonella enterica subsp. FT enterica serovar Typhimurium putative cytoplasmic protein FT Stm0273 or SciH SWALL:Q93IS8 (EMBL:AE008707) (180 aa) fasta FT scores: E(): 1.2e-40, 68.53% id in 178 aa" FT /protein_id="CAE40123.1" FT /translation="MATTLKGSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVL FT ADLAGKSNTPQPEVGERKFLDVDIDNFDERMKSVAPRAAFQVANTLTGAGHLNVDITFE FT SIDDFSPATVARKVGALNEMLEARTQLANLLTYMDGKTGAEELIGQVLQNPALLGALAA FT APKPADAGPADADAESAQPGPQAR" FT CDS 756283..757785 FT /transl_table=11 FT /locus_tag="BPP0715" FT /product="conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical protein FT Ypo2938 SWALL:Q8ZCP0 (EMBL:AJ414154) (500 aa) fasta scores: FT E(): 1.7e-158, 74.03% id in 493 aa, and to Salmonella FT enterica subsp. enterica serovar Typhimurium SciI protein FT SWALL:Q93IS7 (EMBL:AJ320483) (497 aa) fasta scores: E(): FT 7.9e-156, 73.62% id in 489 aa" FT /protein_id="CAE40124.1" FT /translation="MTAVARRERAQAESSLAADDLSALLKKEFKPKTEQAREAVEHAVR FT TLAHQALENSGLGLSSDAYRTIQAIIAEIDRKLSEQINLVMHHPDFQQLEGAWRGLHYL FT VTNTETDELLKIRFMCLSKNELGRTLKRYKGVGWDQSPIFKRVYEEEYGQFGGEPIGCL FT VGDYSFDHSPPDVELLGEIARISAAAHCPFIAGASPNVMQMDSWQELSNPRDLTKIFTN FT TEYVAWRSLRELEDARYVGLAMPRFLARLPYGARTNPVDEFDFEEETDGANHDRYTWAN FT SAYAMAANINRSFKLYGWCTSIRGVESGGAVENLPCHTFPTDDGGVDMKCPTEIAISDR FT REAELAKNGFMPLVHRKNSDFAAFIGAQSLQRPQEYHDADASANAKLAARLPYLFACCR FT FAHYLKCIVRDKIGSFRERSDMERWLNDWIMNYVDGDPANSSQETKARKPLAAAEVQVT FT EIEDNPGYYAAKFFLRPHYQLEGLTVSLRLVSKLPSLKQNEG" FT misc_feature 756550..756585 FT /note="PS00213 Lipocalin signature." FT CDS 757843..758328 FT /transl_table=11 FT /locus_tag="BPP0716" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0085 SWALL:Q9I747 (EMBL:AE004447) (162 aa) fasta FT scores: E(): 6.5e-21, 42.13% id in 159 aa, and to FT Salmonella typhimurium and Salmonella enterica subsp. FT enterica serovar Typhimurium putative cytoplasmic protein FT Stm0279 or SciM SWALL:Q93IS3 (EMBL:AE008707) (161 aa) fasta FT scores: E(): 4.1e-18, 36.64% id in 161 aa" FT /protein_id="CAE40125.1" FT /translation="MAVDMFMKIEGANGESKDANHKDWTDIVSFSWGATQPASLATGGG FT QGVGKASFNDLHVVARIDKAAPAVMKHCASGKHLGKIELSVCKAGGAQVEYSKVTLEDV FT LVTSVQIAADNGSEAVLVNYAFQAAKVRQQYWEQTESGGKGAESLVAWDIKQNKEIG" FT CDS 758378..759187 FT /transl_table=11 FT /locus_tag="BPP0717" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0086 SWALL:Q9I746 (EMBL:AE004447) (281 aa) fasta FT scores: E(): 2.3e-33, 45.13% id in 257 aa, and to Rhizobium FT leguminosarum ImpE SWALL:Q93EC9 (EMBL:AF361470) (276 aa) FT fasta scores: E(): 1.4e-11, 29.21% id in 267 aa" FT /protein_id="CAE40126.1" FT /translation="MQTSVLAMPPRDGGLAGQAAAVQARIRRAPADADLRAQLFQLAAV FT QGDWRRAAEQLQLCARLNPLAQPMANLYLAAIHGELRREAVLAGQAEPGFLAERPCWCE FT PLLQALRAQASDPERAAMLRAQAFDAAQASAGTLEDAAAGQAGYAWICDGDSRLGPVCE FT LILDGSYAWLPFAQVAAVHLPAPQGLCDLVWARAEIALADGAVVRGLVPARYPPSAGQD FT DGLRLGRATCWRPLGQDGYAGEGQKMWLTDAGEFALLDVRALRRQAP" FT CDS 759184..759702 FT /transl_table=11 FT /locus_tag="BPP0718" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0087 SWALL:Q9I745 (EMBL:AE004447) (169 aa) fasta FT scores: E(): 1.5e-21, 45.96% id in 161 aa, and to FT Salmonella typhimurium and Salmonella enterica subsp. FT enterica serovar Typhimurium putative cytoplasmic protein FT Stm0269 or SciD SWALL:Q93IT2 (EMBL:AE008707) (164 aa) fasta FT scores: E(): 2.1e-14, 35.33% id in 150 aa" FT /protein_id="CAE40127.1" FT /translation="MRIADERVARDRLQPSLLDRLVDDEPWRRSEAPEAALLTHAGLRA FT AVLRDLRWLLNTVNLASSQDLAPYRHVPASSVNFGVRAMAGRRMSEIDWVDVETSIRDA FT IAAFEPRILESSVEVRCVSDTRTLEHHNVLSLEIRGMLWCVPHPREFLFRTDIDLESGH FT MDLRDLGGA" FT CDS 759702..761615 FT /transl_table=11 FT /locus_tag="BPP0719" FT /product="conserved hypothetical protein" FT /note="Similar to Salmonella typhi hypothetical protein FT Sty0289 SWALL:Q8Z978 (EMBL:AL627266) (627 aa) fasta scores: FT E(): 5.5e-55, 45.69% id in 639 aa, and to Salmonella FT enterica subsp. enterica serovar Typhimurium SciC protein FT SWALL:Q93IT3 (EMBL:AJ320483) (627 aa) fasta scores: E(): FT 2.7e-54, 45.38% id in 639 aa" FT /protein_id="CAE40128.1" FT /translation="MDARLLDYYNRELVYMRELGAEFARQHPKVAGRLGMHGTEVADPY FT VERLLEGFSFLAARIHLKMDAEFPRFTQRLLEVVHPHYLAPTPAMAVAQFSPSMNEGTL FT AGGFTLPRGTVLRGGLARGEQTPCEFMTGHALRLWPLRVTAAELTGAPTDLPLARLGLG FT GREAGVASALRLRLEVCGGVSLEELDLDQLVFYLNGSDAPMQRLLELIMCHTVAVLGHD FT SERPVSWINRLPADAVRHEGFADDQALLPTDTRVFQGYRLLQEYFAFARRYLFFSLNGL FT KQGLCTRRAAPAAAAGPAGTRRFDLTLLLSAAAPELEGAISAGNLALHCAPIVNLFPRR FT ADRVAVTPRHHEYHVVVDRTRPLDFEVYSLTRVLGHMSAQRPEQEFRPFYGSFGADADD FT YGAYYSLRREPRLASDSARRHGTRTSYTGSEVYLSLVDRHEAPFADTLRHLGIDALCTN FT RDLALLLPLGGASDFSLRVSAPVGAIKVLHGPSRPAAAMADHGTAWQLISHLGLHYHSL FT TDLDETRGAQTLRELLNLYGNLADPVARKHISGVRHVRVEPMHHRLPVPGPIVYGRGVR FT IDLQVDETAFSGISPYLCGAVLEQFFARHVSINMMSALTLSTPQRGAVASWRPRMGRRP FT AV" FT CDS 761650..762309 FT /transl_table=11 FT /locus_tag="BPP0720" FT /product="conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical protein FT Ypo0511 SWALL:Q8ZII7 (EMBL:AJ414143) (205 aa) fasta scores: FT E(): 0.72, 26.81% id in 179 aa" FT /protein_id="CAE40129.1" FT /translation="MQTRNARRLYPVYDPVHLIGTVARREDDGAWTVWCDGRPWRVRRA FT ASCLLVPEEGDTALISGPDAERVYLIAVIEQADAAQATLELEGRVSLRSRTADVSLEAA FT GEVRLRGAQAVRVETEALSVKAGQAACAAARMHYVADEVEGAVGSMRLVGKVYEAVLDR FT LTQLARMAVRQTSEVEHVRAGTLDYQAEQSARVHAPYTMLTADALVKVDAKQIHMG" FT CDS 762312..763406 FT /transl_table=11 FT /locus_tag="BPP0721" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0089 SWALL:Q9I743 (EMBL:AE004447) (348 aa) fasta FT scores: E(): 8.3e-46, 43.39% id in 348 aa, and to Yersinia FT pestis hypothetical protein Ypo2948 SWALL:Q8ZCN3 FT (EMBL:AJ414154) (341 aa) fasta scores: E(): 3.8e-34, 37.98% FT id in 337 aa" FT /protein_id="CAE40130.1" FT /translation="MDAAARTDRHAAPAVLPPAFWQALAAAPHGHDLFHVLRWIDARAG FT ARAPLGRGASPRHEPVRMRQEPSLAFAPATLAAARAPGEGAAPELSIYSFGLFGPNGPL FT PLPLHLTEHARERRQHHGDHSLAAFADLFHHRLILLFYRAWADAQSTASLDRGQERFSG FT YVASLLHLGAPSLRRRDSVMDHAKYHMAGHLLRQTRNPEGLCQVLRAFFGLPVGVDEFV FT AQWIRLEAGQRLRLGAGGGLGGGAPLGVAVRDAQHKFRIRLGPLDWQDYLAFLPGSARA FT RQLLHWVRLYVGVEFAWEVRPVLRRDAVRSVRLGAAAPLGLASWLGRRPPRLGDAAELL FT LDYEGRERQAARRAQAFHEKEQAA" FT CDS 763403..763936 FT /transl_table=11 FT /locus_tag="BPP0722" FT /product="conserved hypothetical protein" FT /note="Similar to Salmonella typhimurium and Salmonella FT enterica subsp. enterica serovar Typhimurium putative FT cytoplasmic protein Stm0288 or SciV SWALL:Q93IR4 FT (EMBL:AE008708) (173 aa) fasta scores: E(): 1.6e-30, 47.9% FT id in 167 aa, and to Salmonella typhi hypothetical protein FT Sty0317 SWALL:Q8Z956 (EMBL:AL627266) (145 aa) fasta scores: FT E(): 1.7e-27, 51.07% id in 139 aa" FT /protein_id="CAE40131.1" FT /translation="MIHDMSYDGQILAWPGHGQFRATSGMRGFQHPGQACTPDSGPVPP FT GLYRVLLADRGVALDDGRGVCNLAPAWGIQQVPRGAAAGECESYWANWGENRARMEPAD FT AATRNRCAPARGGFYLHDSTKGFSHGCIEVEGRIFALLRSYARQRGRNAMILKVAYVAD FT RATNGGTAGDGHAR" FT CDS 763926..764303 FT /transl_table=11 FT /locus_tag="BPP0723" FT /product="putative exported protein" FT /note="Similar to Brucella melitensis hypothetical protein FT Bmeii1078 SWALL:Q8YB23 (EMBL:AE009740) (125 aa) fasta FT scores: E(): 9.3e-08, 40.54% id in 111 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa1149 FT SWALL:Q9I4I6 (EMBL:AE004545) (122 aa) fasta scores: E(): FT 2.1e-06, 33.33% id in 123 aa" FT /protein_id="CAE40132.1" FT /translation="MRADRHAWLLAACLAPALAAAGPLRVENRLAECVRVQPGLRSVEH FT NVVLQRFDLTVVRPIGDCGCKSALVAYQASVVREDGTRGASQSGVFGAMRSGPRTLPLA FT SDAALLGERPVALGLGCAPAD" FT misc_feature 763926..763988 FT /note="Signal peptide predicted for BPP0723 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.635 between residues 21 and 22" FT CDS 764327..766900 FT /transl_table=11 FT /locus_tag="BPP0724" FT /product="putative ATPase with chaperone activity" FT /note="Similar to Salmonella typhimurium and Salmonella FT enterica subsp. enterica serovar Typhimurium putative FT ATPase with chaperone activity, homolog of yersinia ClpB FT Stm0272 or SciG SWALL:Q93IS9 (EMBL:AE008707) (879 aa) fasta FT scores: E(): 1.8e-131, 54.25% id in 881 aa, and to FT Salmonella typhi ClpB-like protein sty0294 SWALL:Q8Z973 FT (EMBL:AL627266) (887 aa) fasta scores: E(): 2e-130, 53.68% FT id in 881 aa" FT /protein_id="CAE40133.1" FT /translation="MSDIGRAELFGKLDSLSYRALEDATALCKLRGNPYVELAHWVHAI FT AHAQDSDLHHIARAFELDLGALQQDLVRALDQLPRGAGAVSDLSEHVDHVVERAWALAS FT LRYGAARIRSGHLLLALLRDPSLRGVLAGMSGQFARVVPDLLLQGLPEMTRGSPEARAD FT AAVADAPPDGGGAAGALARYAVDLTAQARAGRLDPVTGRDDEIRQLIDVLMRRRQNNPL FT LTGEAGVGKTAVVEGLALRLARGDVPAPLREVALYLLDIGLLQAGAGVKGEFEQRLRQV FT IDAVQGSERPIVLFIDEIHTLVGAGGAAGTGDAANLLKPALARGQLRTIGATTWAEYKQ FT YIEKDPALTRRFQAIQVHEPDEAGARRMLRGLAGALQAHHGVLLLDEAVEAAVRLSHRY FT IPARQLPDKAVALLDTACARVAVSQQATPAALEDARRRIDALDLELEIAAREARLDAGP FT AERVAGLREQGQAARWEREAALAGQVFGLREQLDAADEQSAPALRAALREAADALARSQ FT GEAPLIHPAVDAAAVVADWTGIPVGRMVRDEAQAVLALADTLERRVVGQRHALELIARR FT IQTARAGLTDPGKPVGVFLLCGPSGVGKTETALALAEALYGGEQNLITINMSEFQESHT FT VSTLKGAPPGYVGYGEGGVLTEAVRRRPHSVVLLDEVEKAHADVHEIFFQVFDKGWMED FT GEGRYIDFRNTVILLTANVGADLIASLCADPELAPEPDALAAALRAPLRDVFPAALLGR FT LAAVPYLPLSDSMLAHIVALQFERVGQRLRERHGMDLEVEPAAAELVVARCVEVESGAR FT MVDAILSQRVLPQIGRELLGASLQQRTWRRVRVRAVDGEFACEYE" FT misc_feature 764984..765568 FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA), score 8.4e-07" FT misc_feature 764999..765022 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 765263..765301 FT /note="PS00870 Chaperonins clpA/B signature 1." FT misc_feature 766118..766141 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(766999..767799) FT /transl_table=11 FT /locus_tag="BPP0725" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa transcriptional FT regulatory protein AlgP or AlgR3 or Pa5253 SWALL:ALGP_PSEAE FT (SWALL:P15276) (352 aa) fasta scores: E(): 0.49, 29.77% id FT in 262 aa, and to Rhizobium loti probable esterase Mlr0240 FT SWALL:Q98N93 (EMBL:AP002994) (316 aa) fasta scores: E(): FT 0.93, 28.72% id in 275 aa" FT /protein_id="CAE40134.1" FT /translation="MMLTLIVRNPEPGASARRADFHAPGGTLGRDAENCLALPAAPGQL FT CRVQAALRADAQGWRLHNLSGMAAVHINDAALAPGAVRAIQAGDTLRVGAHTLEVSGPD FT APDARPAALPEAAADTPADAPRRGQAGAGAAEDIFSGLFGPGTLPVGGTADAATHPFDL FT DSAQARNAADPLAHLPAGDAAVSRPAGDPLALFDAPHGGADVFADATPSALPAHDPLAP FT LRADPVRDTLLPRHAAGDGPAAHDHAPAGGTFLRPAAPRADQAD" FT CDS complement(767827..768222) FT /transl_table=11 FT /locus_tag="BPP0726" FT /product="putative lipoprotein" FT /note="no significant database matches" FT /protein_id="CAE40135.1" FT /translation="MTLRFHATLLGCAILLAGCASPTSERAGEPASDQAERDLQQIRQS FT YSAGAYGDVIRQVAHADALAQAPQSMRIEAWKLQAFSYCVTDHRVLCEAGFRRILQADP FT AFTLEPNEAGHPQWGPAYERARAAPAG" FT misc_feature complement(768142..768222) FT /note="Signal peptide predicted for BPP0726 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.813 between residues 27 and 28" FT misc_feature complement(768166..768198) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 768487..769029 FT /transl_table=11 FT /locus_tag="BPP0727" FT /product="putative lipoprotein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1666 SWALL:Q9I359 (EMBL:AE004594) (168 aa) fasta FT scores: E(): 3.4e-14, 37.76% id in 143 aa, and to FT Salmonella typhi probable lipoprotein Sty0303 SWALL:Q8Z967 FT (EMBL:AL627266) (178 aa) fasta scores: E(): 1.2e-13, 31.21% FT id in 173 aa. Possible alternative translational start FT site" FT /protein_id="CAE40136.1" FT /translation="MLVAVPTRRALRAAAWIAVAVLAAGCASTASRKAAPYAIELKADP FT RINPDASGRPSPIQVTLYELRSSAEFEARDFFTLQGDAQAALGKSLIETDQVILQPGET FT RKLSYPGNTEARVVGIVAAYRDLERSPWRIVVPLPQAQNTNIYKFWQFSPNEETVRVAV FT GGQGVQIVDRERSWWPF" FT misc_feature 768487..768588 FT /note="Signal peptide predicted for BPP0727 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.607 between residues 34 and 35" FT misc_feature 768532..768564 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 768733..768756 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 769075..770409 FT /transl_table=11 FT /locus_tag="BPP0728" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium leguminosarum ImpJ SWALL:Q93EC4 FT (EMBL:AF361470) (446 aa) fasta scores: E(): 2.2e-70, 46.1% FT id in 449 aa, and to Pseudomonas aeruginosa hypothetical FT protein Pa0079 SWALL:Q9I753 (EMBL:AE004447) (444 aa) fasta FT scores: E(): 4.7e-79, 47.86% id in 445 aa" FT /protein_id="CAE40137.1" FT /translation="MALDNKVVWSEGMFLRPQHFQQFERHIEAQLRVRAAVASGCGWGY FT TALEIDRDALALGKLALARAAGVLPDGTPFEFERADEGPPALDIDPAMRDARVMLALPR FT RRAGACEVVYEDGADTLARYCVHEGEIEDSGSVGLEPALVQLGRLRLRLVPETELGDEW FT VALGAARVLERRADHRVVLDEMYIPPWLAADANPALRGYAGELSGLLQARGAALAQRLA FT QPGRGGVSEVADFLLLALVNRYAGALWHARQVPALHPERLFRDWLMLACDLATYTCATR FT LPEVLPDYRHDDLQASFGPLMAELRRSLSVVLEQHAVQIPLHDRGQGVRVAQIADAELL FT RSAGFVLAVHADMPAETVRTRFPAQVKIGPVERIRDLVHLQLPGVAVRALPVAPRQIPY FT SAGHVYFELDKNGEFWRQLERTGALALHLAGEFPGLALEFWAVRD" FT CDS 770430..771710 FT /transl_table=11 FT /locus_tag="BPP0729" FT /product="putative outer membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0078 SWALL:Q9I754 (EMBL:AE004447) (449 aa) fasta FT scores: E(): 3.1e-68, 49.16% id in 417 aa, and to FT Salmonella typhimurium and Salmonella enterica subsp. FT enterica serovar Typhimurium putative outer membrane FT protein, OmpA family Stm0282 or SciP SWALL:Q93IS0 FT (EMBL:AE008707) (434 aa) fasta scores: E(): 2.8e-44, 38.94% FT id in 398 aa" FT /protein_id="CAE40138.1" FT /translation="MHAANPPFPDFGADAAADPGAASRLRPHEYVISGSNPLVAAANPL FT LDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAA FT ALTPWGGGGVWSAHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGF FT EGRYRVIDNGRTQLETLRQRLLRILRGARGEYPRALSPHWRDTPVQQALRRLPVPLWAY FT GALAAALALALFWGLSWRLGERSDAVFAAVARLKPPTVQIAPAPRPAPAPRLAVFLQPE FT VRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGY FT TDNVPIRTARFPSNWHLSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGR FT SVNRRVEITVMVPPAPHARTPEEGATP" FT misc_feature 771078..771146 FT /note="1 probable transmembrane helix predicted for BPP0729 FT by TMHMM2.0 at aa 217-239" FT misc_feature 771342..771638 FT /note="HMMPfam hit to PF00691, OmpA family, score 6.2e-21" FT CDS 771707..775312 FT /transl_table=11 FT /locus_tag="BPP0730" FT /product="putative membrane protein" FT /note="Similar to Rhizobium leguminosarum ImpL SWALL:Q93EC2 FT (EMBL:AF361470) (1158 aa) fasta scores: E(): 2.3e-41, FT 32.42% id in 1209 aa, and to Rhizobium loti hypothetical FT protein Mlr2360 SWALL:Q98IK4 (EMBL:AP002999) (1176 aa) FT fasta scores: E(): 3.6e-108, 34.32% id in 1215 aa" FT /protein_id="CAE40139.1" FT /translation="MIPRLFGWLFSRGLWSFLGLVALALLVWIAGPLLAIGALRPLESE FT TARVLVIAALFAFALLRLLWRKWREGRLNAQLLGQLRRPARPEAEAAAEPPPSDLRELE FT GRFDEAVELLRKTRFDGGGGRGWLQRYSRQYLYQLPWYVIIGAPGSGKTTALVNSGLDF FT PLAERFGKAALRGVGGTRNCDWWFTDDAVLLDTAGRYTTHESDPTGDEESWRGFLGLLT FT RFRGRQPINGAMLTVSIEDLLAASDAERARHAAVLRRRLQELREQLGIHFPVYVLVTKA FT DLLAGFEQYFASFSREDLEQVWGFTLPYARAQEPDFDLYEAFHAEYRLLQRRLDDALPE FT VLAAEPDEARRALAYLLPQQFAGLQAVLGHFLSDVFASSRFEERLVPRGVYFTSGTQGG FT ETFDQVTGHLKRYLRIESGPAPAAAEEGRSFFLKRLLQDVIFPEAGLAGRNLRWERRYR FT RLHWAGYGLITLAFLGLAAGWLASYGNNVRYLDEVARRVPTVDKLGRDIKITRSGDVLG FT LMPFLDGLWYLPRDAAFEPDAPPLSYRFGLYQGGKMHAAMQGVYRGTLDSVLLPQVARR FT IEAALRAARADDLEYGYEALRAYLMLYEADHYDAEFMHAWLLSDMQGTLPEGYTRRQYD FT LMSLHLRQLAQGGVLASPFPRDEALVRQARDELARHTLAQRAYSRLRRMLAGADDQPPT FT TAVTLGGPQASAVFVRKSGKPLAQGIAALYTYRGYWDVFNPRVTRVAERLRSDDAWVLD FT IAPPGVLDEAARQQLIVDIKRLYLNDYVARWDGYLDDLALAPRSSLLQSIQLARTLSAP FT DSPLVRLTQGVARETTLLRDAGGDERSLADQARDRVSSTREALEQMFGPTGPGAATRAD FT AGDGKLERVVDQHFEPWRRLARADGQGGAPIAATTSLVNELYTYLTAADAALRSASPAP FT ASDVVTKLRAEAGRLPRPLRDVLDDLSTGAAGEVSGVARERLGEDLYATIGLFCRQAIA FT GRYPFAPGSPRDVAPNDLARLFAPNGMIDEFFQKNLVSQIDVSEARWRFKPGMDGTPGQ FT ASALLDSFQRAAAIRDAYFMAGSAEPAFRVSIRPVEMDPAITQFVMDVDGQTVRYAHGP FT QVATSVQWPGPRGANQVRIELTPQAGAAGLSASGPWALNRLLDQARVTRGASPEISLAS FT FDIGGRKVVLEIRAGSVRSPFHLAEMRGFSCPGRS" FT misc_feature 771707..771811 FT /note="Signal peptide predicted for BPP0730 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.941 between residues 35 and 36" FT misc_feature join(771743..771811,771842..771901,773084..773152) FT /note="3 probable transmembrane helices predicted for FT BPP0730 by TMHMM2.0 at aa 13-35, 46-65 and 460-482" FT misc_feature 772142..772165 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 775309..776043 FT /transl_table=11 FT /locus_tag="BPP0731" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0076 SWALL:Q9I756 (EMBL:AE004446) (226 aa) fasta FT scores: E(): 1.6e-10, 31.79% id in 195 aa" FT /protein_id="CAE40140.1" FT /translation="MSGGRAMPGADPDGGVGWYGKIPAAGDFMRRRLSHGLVAWWDKWL FT QYGLAALRQMPAGGAERAYAAAPLWNFAIPAGAGAGAVLLGGMAPSRDRVGRAYPLSAM FT AVVPAQAYQPGLLEDAGDYYRQLGATLLAAVRRGGAAEQLDRQLQAMPLPVAMPPARPA FT PAGQDILDILNAGQAGNAPLAGARGLAAWPELPFCFNPGSHTSYWWTNQADGAALQTYV FT HGGALNATLFLRLFAAPPAWRV" FT CDS 776068..777270 FT /transl_table=11 FT /locus_tag="BPP0732" FT /product="hypothetical protein" FT /note="Weakly similar to Micrococcus sp. 28 proline-rich FT extensin-like protein SWALL:Q8VPM8 (EMBL:AY034092) (406 aa) FT fasta scores: E(): 0.00013, 32.58% id in 267 aa" FT /protein_id="CAE40141.1" FT /translation="MRPSSATDTASVLEAAAPRPLGVDAAAPMPPARVRRVLADLLEQL FT APLHERWRVHGRIAPRTVGLDGDGRARLLVDAAQPAADAEALAHAAGFAAFEQYSDDPG FT QPCGPWTDIYGLSALAYALATGAAPPSALRRCVRDDCAPLARRLDEKRWQALAQAIDAG FT LALDYRDRPASLAAFARLLDAADRQAEPPPIAPVASATSATVAVAQAPAPAALPSRAPA FT RRPARTSALAVLAVLAVLAVVLYAALGGRAGDEPAASLAAAPMPAPTSAPTSAPMPAPE FT PAPEPPAPAPEPSPASEPAPLPEPTPTPESVSAPAPQPAPAPAAPPPAAPQPVSVRVDI FT RPWGEVWIDGRSRGVSPPLKQLSLPPGRYAVTVRNPAGPDHRLDLHVAAGQGAAIAHAF FT E" FT misc_feature 776749..776817 FT /note="1 probable transmembrane helix predicted for BPP0732 FT by TMHMM2.0 at aa 228-250" FT CDS join(777368..778456,778460..778534) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0733" FT /product="putative calcium/proton antiporter (Pseudogene)" FT /note="Similar to Escherichia coli calcium/proton FT antiporter ChaA or B1216 SWALL:CHAA_ECOLI (SWALL:P31801) FT (366 aa) fasta scores: E(): 9.6e-14, 33.14% id in 347 aa, FT and to Mycobacterium leprae putative antiporter Ml1267 or FT Mlcb1610.29 SWALL:Q9X7C4 (EMBL:AL049913) (364 aa) fasta FT scores: E(): 5.3e-32, 36.38% id in 371 aa" FT /db_xref="PSEUDO:CAE40142.1" FT misc_feature join(777428..777496,777506..777574,777611..777679, FT 777722..777781,777815..777883,777911..777970, FT 778091..778159,778169..778237,778298..778366, FT 778379..778447,778466..778525) FT /note="11 probable transmembrane helices predicted for FT BPP0733 by TMHMM2.0 at aa 21-43, 47-69, 82-104, 119-138, FT 150-172, 182-201, 242-264, 268-290, 311-333, 338-360 and FT 367-386" FT CDS 778708..780120 FT /transl_table=11 FT /locus_tag="BPP0734" FT /product="putative lipoprotein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra0574 or Sma1060 SWALL:Q92ZB6 (EMBL:AE007247) (465 aa) FT fasta scores: E(): 8.6e-54, 39.65% id in 459 aa, and to FT Listeria monocytogenes hypothetical protein Lmo0525 FT SWALL:Q8Y9K2 (EMBL:AL591975) (443 aa) fasta scores: E(): FT 5.1e-31, 32.23% id in 456 aa" FT /protein_id="CAE40143.1" FT /translation="MGKATWRQVWERARALAGAAALAVLAGCAAPGAQDPGQARNTARE FT AYIYAYPMLYHYRSMYEQAIDTASPAYLGGFGVFQHRAEPYTPQSVDVATSNVDTLYSR FT AWLDLRAEPWVLSLPAVPKSRYNAFQLVDMYTYNLAYLGTRATGFGSGHYLIAGPGWTG FT PVPKGITQVVRADTDFVAVLGRTALNGPADIKAVHALQARYGLRPLSAYTGTAAPAGAP FT PVDWLPWNEQRASSIGFIAYLNQLLAHTQPQPESEADMMARFARIGIAPGRDFEPARLD FT AATRRAMDAGIVDAQQAIEQGARHAAAPATPASLYGSREQLGGDYLKRAVAAAVGIYGN FT TADEAIYLTIGEDAQGRPLDGARAYELRFAPGRQPPVRFFWSISVYALPARGLAENPID FT RYAIGSRTKGIKRGRDGSLTVYLQHDAPARAHAPNWLPTPAGPFVVVARFYGPQPALRD FT GAWVMPALVPAR" FT misc_feature 778708..778806 FT /note="Signal peptide predicted for BPP0734 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.663 between residues 33 and 34" FT misc_feature 778759..778791 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(780128..783082) FT /transl_table=11 FT /locus_tag="BPP0735" FT /product="autotransporter" FT /note="Similar to Agrobacterium tumefaciens autotransporter FT protein YapE or Atu5364 or Agr_pat_528 SWALL:AAL46052 FT (EMBL:AE008958) (868 aa) fasta scores: E(): 8.8e-38, 30.3% FT id in 881 aa, and to Bordetella pertussis BapA protein bapA FT SWALL:Q9F4B4 (EMBL:AJ277632) (903 aa) fasta scores: E(): FT 4.7e-21, 26.14% id in 895 aa" FT /protein_id="CAE40144.1" FT /translation="MLRHLGWLAACCAASAYAADYPGLTLNPGDDFTLQGNDTVNGATA FT VRMSSATLNFGAGPITVNATGTGIFATNGAGALINFLPSSVVTLNVTSPTAGVGILTSS FT SSNTAIDLQADSSLTINAYQGINLAHTPRAAPNRLSIGDGATLRVNASGTGMAPKGLLI FT NNNNSVVVASGGTLGLGTSGGRYARALESSISLTYPDAAADKFTAAPGSNLNLSTTGQD FT SDAFYMLGVGEALMQGNTDIHTTGANSTGFYLYRYGAPTSHLLVAPHAGGHATILTEGQ FT GSHGLWAINGSQAEFANASLQTRGDEAAGLYALTTIGETTTQVRAADTAIATAGAQSYG FT VLAQGYGTDVALTRGTVATSGAQAHAVVVAGESRFSADGTAIQAQGDGAMALLMSSDRD FT AQTATVSGGSLRGSAIGIEGGTARVELDGTAVDGATNWLHVADSGALAVLRDVTVPGRD FT PSQTDAPAFPAILHGTRAAGIAATATVVARNADLTGAAITEPGNTSHVTLIDTTWHMTG FT SSTITNLVNDPSLIDFAAPQGGAYKTLTVGNYSGDGTIALNTYLGADDSPSDKLVIDGG FT TASGSSKLRIKNTGGPGAATQAQGILVVDTRNGGTTTATAFSLSEPVVVGAYDYQLYRG FT AQTPEQEQNWYLRSAILPPVDPTNPDQPGEPIPTYRPETPGAVMAPEVARQVGARMLDT FT FHDRMGDQYALLNSAQRKAGWGRVIGQRLTQRWDGDVEPRFKGNIWIAQAGADMLERDR FT DDGLSDRLGLFSAYGQADGRVDGFVQGEHGKQAGKLRVEAYGLGLYWTRLKHTNWYWDN FT VLMGNYYTGRSRSDRGVAASLEGWGFTASSEAGYSFFPRHDIMLQPQAQLVYQYTSLDN FT THDAYSTIRYHGGGALTGRIGLLLQGNADQPERIRPYARINLWHRFSHGESVSFGPSDS FT IRTEYGSTSMDLRIGLAAPLNRQTELYASAGYGFDLDGNQRQAYYGNIGVRYSW" FT misc_feature complement(780134..781477) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03212, Pertactin, score 1.8e-08" FT misc_feature complement(783029..783082) FT /note="Signal peptide predicted for BPP0735 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 18 and 19" FT CDS join(783532..784002,784006..785010) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0736" FT /product="putative phospholipase D protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3092" FT /db_xref="PSEUDO:CAE40145.1" FT misc_feature join(783961..784002,784006..784044) FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif, score 0.26" FT variation 784003..784005 FT /note="In-frame TAG stop codon in parapertussis; CAG in FT pertussis" FT misc_feature 784678..784761 FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif, score 4.6e-05" FT CDS complement(785017..786126) FT /transl_table=11 FT /gene="modD" FT /locus_tag="BPP0737" FT /product="molybdenum transport ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3093" FT /protein_id="CAE40146.1" FT /translation="MPSDFPPGQAGIHARFRVDYPEFSLDVDLRLPGRGVTALFGQSGS FT GKTTCLRCMAGLAPVSDGYLDINGEVWLDSAARRAVPTHKRALGYVFQEASLFEHLDVL FT ANLRYGMKRVPPALRRVDLEQATGLLGIGHLLARMPAGLSGGERQRVGIARALLTSPRL FT LLMDEPLAALDVQRKREILPYLERLHDELDIPVIYVSHSPDEVARLADHLVLLEQGRAV FT ASGPLDALLTRLDLPMAMTDDASVVVTGEAAGFDPGYALLTLQLPGGRARLRFVHQAAP FT AGQRLRVVVHARDVSLALQQPREGSILNVLAVRVLEMAPAANPAHVMVRLDADGTPLLA FT RITRYSRDRLALAPGMQAWAQIKAVSLLA" FT misc_feature complement(785023..785214) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03459, TOBE domain, score 2.2e-11" FT misc_feature complement(785470..786027) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3e-48" FT misc_feature complement(785656..785700) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(785983..786006) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(786138..786818) FT /transl_table=11 FT /gene="modC" FT /locus_tag="BPP0738" FT /product="molybdenum transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3094" FT /protein_id="CAE40147.1" FT /translation="MSLTSADWAAIWLTIELASLTTLLLLVIGTPIAWWLARTRSRLKG FT PVGAIVALPLVLPPTVIGFYLLVAMGPNGYVGQLTQSLGLGTLPFTFAGLVVGSVFYSM FT PFVVQPLHNAFEAIGRRPLEAAATLRAGPWDRFVSVALPLARPGFVTAGILDFAHTVGE FT FGVVLMIGGNIPGKTRVVSVQIFDHVEALEYAQAHWLAGGMVVFSFIILLLLYSRRQRA FT TAAL" FT misc_feature complement(join(786168..786233,786342..786407, FT 786495..786560,786606..786671,786708..786773)) FT /note="5 probable transmembrane helices predicted for FT BPP0738 by TMHMM2.0 at aa 15-37, 49-71, 86-108, 137-159 and FT 195-217" FT misc_feature complement(786249..786479) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 6.6e-14" FT misc_feature complement(786285..786308) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(786840..787595) FT /transl_table=11 FT /gene="modB" FT /locus_tag="BPP0739" FT /product="molybdate-binding periplasmic protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3095" FT /protein_id="CAE40148.1" FT /translation="MKIRAIPTLWALAATLLAAPALAGEVQVAVAANFTAPMQAIAKAF FT EEDTGNRAVASFGATGQFYAQIKNGAPFEVFLAADDSTPAKLDAEQETVPGSRFTYATG FT ALALWSARAGYVDDQGAVLKQGDFKHLSIANPKTAPYGLAATQVLAKLGLADKLAPRIV FT EGQSISQAYQFVASSNAELGFVALSQIYKDGKLTGGSAWIVPASMHEPIRQDAVILKKG FT QDNATARAFVEYLKSPRSAAIIKSFGYQL" FT misc_feature complement(787527..787595) FT /note="Signal peptide predicted for BPP0739 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.974 between residues 23 and 24" FT CDS complement(787731..788615) FT /transl_table=11 FT /locus_tag="BPP0740" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3096" FT /protein_id="CAE40149.1" FT /translation="MMPGNAAPRPVHYRHEQVGDVKIFYREAGDPASPAVLLLHGFAAS FT SYMYRDVIAALADGYRVVAPDLPSFGFTESPARDAYAYTFDNITRTMDRFTEQLKLDRY FT ALMVHDYGAPVGWRLASAHPDRVTALVSQNGNAYEEGLAQGWDAIRRYWASPTAENRAA FT LHGFPTPASIKWQYLEGVPDPSLVAPDGYTLEGLQVSRPGNAEIQLDLLLDYASNVQRY FT PQFQAYFRDRQPPLLAVWGRNDPYFLPAGAEAWKRDIPAAEVRFYDTGHFALETHGAEI FT IPAIRAFLDAKVR" FT misc_feature complement(787749..788438) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 4.5e-24" FT CDS 788640..789284 FT /transl_table=11 FT /locus_tag="BPP0741" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3097" FT /protein_id="CAE40150.1" FT /translation="MNLKVAWIRCNLSISNSLVTNMATPATHPPHFIANNLALDFINSA FT FGVGPASHDCLGDDESVLAWLEAAGHVPAGLARPPAGLAELARALREAAARMVRAAQAG FT QGGDAALVNQVLEAGRPARKLAWDDGQGGYTLAECPRDHSAASLLEPVAAALADLLAGD FT ALRHVRRCEAHDCTLVFLDVTKSHRRRWCSMALCGNRMKVAAFRSRRQGAG" FT CDS complement(789386..789508) FT /transl_table=11 FT /locus_tag="BPP0742" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3098" FT /protein_id="CAE40151.1" FT /translation="MKQFAVTLLALFGVDAQASVAGPQRLLPILPGEPTRTERR" FT misc_feature complement(789446..789508) FT /note="Signal peptide predicted for BPP0742 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.890 between residues 21 and 22" FT CDS complement(789554..789853) FT /transl_table=11 FT /locus_tag="BPP0743" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3099" FT /protein_id="CAE40152.1" FT /translation="MRTFTSAALLAAALFGFNAFAGSGELDYPPAGAQGGSLTRSQVQH FT ELAIARAAGQLVFGESQEPAPQLAGSAATRAQVQAELAQARNASAASEYVETGA" FT misc_feature complement(789791..789853) FT /note="Signal peptide predicted for BPP0743 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 21 and 22" FT CDS complement(790005..790484) FT /transl_table=11 FT /locus_tag="BPP0744" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3100" FT /protein_id="CAE40153.1" FT /translation="MDPPAWAALLEACALGAWMRGSSWAYPAANLAHLLGLVLLVGAML FT LLDLRLLGLGRRFALADVSAVLTPLAAGGLLLQLASGALLFSADAAPLSGNALMQYKAA FT GIALGVANALLFRALWGARLAGWDSRPPPWGRLQAALSLLLWLAVATLGRLIAYA" FT misc_feature complement(join(790017..790082,790122..790175, FT 790221..790286,790326..790391)) FT /note="4 probable transmembrane helices predicted for FT BPP0744 by TMHMM2.0 at aa 31-53, 66-88, 103-121 and FT 134-156" FT misc_feature complement(790410..790484) FT /note="Signal peptide predicted for BPP0744 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.612) with cleavage site FT probability 0.608 between residues 25 and 26" FT CDS complement(790500..790853) FT /transl_table=11 FT /locus_tag="BPP0745" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical signal FT peptide protein Smc00030 or R00945 SWALL:Q92RD9 FT (EMBL:AL591785) (128 aa) fasta scores: E(): 0.00011, 28.31% FT id in 113 aa" FT /protein_id="CAE40154.1" FT /translation="MTIRHLLAAGGLAAALAAPAWAHHGWSSYDADQTLTIEAPLTEVR FT YRNPHAEVKVDYQGASWEVVLAPVSRMESRGLAKDALAVGKTVTIVGYPRKDGTHEVRA FT ERITVDGKTIELR" FT misc_feature complement(790788..790853) FT /note="Signal peptide predicted for BPP0745 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.635 between residues 22 and 23" FT CDS complement(join(790921..791781,791781..793013)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0746" FT /product="probable TonB-dependent receptor (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3101" FT /db_xref="PSEUDO:CAE40155.1" FT misc_feature complement(790930..791259) FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region, score 1.7e-10" FT misc_feature complement(792948..793013) FT /note="Signal peptide predicted for BPP0746 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.977 between residues 22 and 23" FT CDS complement(793010..793513) FT /transl_table=11 FT /locus_tag="BPP0747" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3102" FT /protein_id="CAE40156.1" FT /translation="MAILRQYGADRQLRLAICPNGLETAMDHALDALDRRLLALLRADA FT RLPTATLARQLHVSRGTVQNRMARLERSGIVAGYTVRLRNEDEHGIRAITLIEVRGAAT FT DAVVAALRRIPEALQVHSTNGRWDLVVELRAADLLAFDRVLRDLRSIDGVANSESNLLL FT TAHR" FT misc_feature complement(793055..793354) FT /note="HMMPfam hit to PF01037, AsnC family, score 8.9e-07" FT CDS 793550..794833 FT /transl_table=11 FT /locus_tag="BPP0748" FT /product="ornithine aminotransferase" FT /EC_number="2.6.1.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP0539" FT /protein_id="CAE40157.1" FT /translation="MVCRPGRTIPQETAMNMPAPAATRRDRIEDELGAHNYQPLDVVLA FT RGSGVWLYDTAGRRYLDCLSAYSAVNQGHCHPRILAAMVEQAQRLTLTSRAFRHDQLAP FT LYEDLARLTGAHKVLPMNSGAEAVETALKAVRKWGYEARGVPAGQAEIIVCANNFHGRT FT LGIVGFSTDPDARGGYGPFAPGFTVVPFGDFAALQAAVTPRTVAFLVEPIQGEAGVILP FT PPGYFRQVRKLCSERDIVLILDEIQTGLGRTGAFLAEAHEGIEADVTLIGKALSGGFYP FT VSAVLSNQAVLGIFQPGQHGSTFGGNPLACAVARAALRVLHDEGMIDNAREQGAYFMQR FT LRALPGPVREVRGRGLMLALELEPDAGPARAYCERLMARGMLVKDTHGQTLRLSPPLIV FT TREQIDWACAQLAHVLAHSAPGSSGGPS" FT misc_feature 793640..794806 FT /note="HMMPfam hit to PF00202, Aminotransferase class-III, FT score 6.9e-161" FT misc_feature 794270..794383 FT /note="PS00600 Aminotransferases class-III FT pyridoxal-phosphate attachment site." FT CDS 794830..795774 FT /transl_table=11 FT /locus_tag="BPP0749" FT /product="arginase" FT /EC_number="3.5.3.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0538" FT /protein_id="CAE40158.1" FT /translation="MIAASFPHGVSLIGAPTDIGAGQRGASMGPEALRVAGLVRLLERR FT GLQVTDRGNLQGAPNPWRPPANGYRHLNEVIGWNQLVHDAVSAELRQERLPILLGGDHS FT LAIGSISAVARHCRASGRKLRVLWLDAHADFNTNRLTPTGNVHGMPVACLCGNGPAALT FT GMAGRTPAIEPGWVRQIGIRSVDEGERNLVYDAGLEVYDMRYLDEVGMRAVMEAALAGL FT DPQTHLHVSFDVDFLDPELAPGVGTTVPGGPTYREAQLCMEMIADTGLMRSLDIVELNP FT ALDVHNKTAQVAVDLVESLFGKSTLMRRRPGSA" FT misc_feature 794845..795744 FT /note="HMMPfam hit to PF00491, Arginase family, score FT 5.4e-92" FT misc_feature 795124..795165 FT /note="PS00147 Arginase family signature 1." FT misc_feature 795205..795231 FT /note="PS00148 Arginase family signature 2." FT misc_feature 795520..795585 FT /note="PS01053 Arginase family signature 3." FT misc_feature 795790..795795 FT /note="Duplication due to IS1002 insertion" FT repeat_region 795796..795819 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1002 element" FT repeat_region 795796..796826 FT /note="IS1002 insertion sequence" FT CDS 795881..796831 FT /transl_table=11 FT /locus_tag="BPP0750" FT /product="transposase for IS1002" FT /note="transposase for IS1002 element" FT /protein_id="CAE40159.1" FT /translation="MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKW FT LARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVA FT RYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNR FT GIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSG FT YVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQ FT PFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDS" FT misc_feature 796262..796798 FT /note="HMMPfam hit to PF00665, Integrase core domain, score FT 6.8e-30" FT repeat_region complement(796803..796826) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1002 element" FT misc_feature 796827..796832 FT /note="Duplication due to IS1002 insertion" FT CDS complement(796828..797721) FT /transl_table=11 FT /locus_tag="BPP0751" FT /product="two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0176" FT /protein_id="CAE40160.1" FT /translation="MRACGLTAPPVRHAFPRARPSVDSEAPLMNSTLDVIFLVRDDAAH FT QKQLEHLAYLGFKIRACTELIEVYDNCAAHACPLVILSAPLADIHIAAARLRAIDRRVG FT IIAMEAFADSESRIRTLLCGADACLPTDVSGLELAAVLQALLRRIVALAPLPETAELAR FT GSEPGIDLGMEALALEPAMAPPDSKWHLTNQGWTLVSPGGSTLGLTTGEREFLSRLMRA FT PERKISREALIADDLSAPGAADQGAQRSRFVDVMISRLRRKAAHHQMPLPIRALHGWGY FT MFAAEVADEAGARGRH" FT misc_feature complement(796882..797112) FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal, score 0.00086" FT misc_feature complement(797272..797616) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 0.022" FT CDS 797950..798477 FT /transl_table=11 FT /locus_tag="BPP0752" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0177" FT /protein_id="CAE40161.1" FT /translation="MPIRPFTRACLVAALGAVLAGCASNTGQAQAEGAAAANAATSADS FT FAQTTWELVRWTKADGGYRVIPHGDNGEPIFLTFFAQGKQYRVSGFAGCNRYTGAYRLR FT DGKLQITAPASTRMACPQPERARLEADYLRALAQIRSFTLDSGGAPRHLTFNVQGGDVL FT DFMRRQDPPTPE" FT misc_feature 797950..798042 FT /note="Signal peptide predicted for BPP0752 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.807 between residues 31 and 32" FT misc_feature 797983..798015 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 798055..798420 FT /note="HMMPfam hit to PF03724, Domain of unknown function FT (306), score 5.8e-13" FT CDS 798569..799384 FT /transl_table=11 FT /locus_tag="BPP0753" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0178" FT /protein_id="CAE40162.1" FT /translation="MSAISPGRVALSFSLLLALAACAADPAGGGASRAQAPERHSDMLA FT QTNWELARWTRPGGALRPVPHGGAGKTAPITLSFTHQRGAARLAGFAGCNNYSGQYTIA FT NGLLIVTAPPVSTRMACANADLARLEQDYLAGLTAVTASRLDHDTRPQRLTLALRSGDV FT LDFARRADPLAGGQPGAAKLVYVASSKAPCSAGAGRAQCYQVRDSASQPWQLWYGDITG FT FAFQPGIEYRLRVVEVRDPNPPADASGVRWVLDHVVEQRVAAPRPAPAP" FT misc_feature 798569..798637 FT /note="Signal peptide predicted for BPP0753 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.771 between residues 23 and 24" FT misc_feature 798602..798634 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 798683..799042 FT /note="HMMPfam hit to PF03724, Domain of unknown function FT (306), score 2e-14" FT CDS 799445..800164 FT /transl_table=11 FT /locus_tag="BPP0754" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0179" FT /protein_id="CAE40163.1" FT /translation="MTAVVNIAAYKFVSIANPADLREPMLEQAGQRQLKGTVLLAPEGI FT NLFLAGAADAIEGFLRWLRADARFADLQAKYSESARMPFRKLLVKVKREIIRMDHPAIR FT PEAGRAPAVDAATLRRWLAQGRELVMLDTRNAFEVEVGTFRGALDWRIERFTQFPQAVR FT DNQAALAGKTVVSFCMGGIRCEKAAIYMAEAGIEHVYQLEGGILKYFEETDGAGFDGAC FT FVFDERVALDAALAPQA" FT CDS complement(800202..802280) FT /transl_table=11 FT /gene="metG" FT /locus_tag="BPP0755" FT /product="methionyl-tRNA synthetase" FT /EC_number="6.1.1.10" FT /note="ortholog of Bordetella pertussis (BX470248) BP0180" FT /protein_id="CAE40164.1" FT /translation="MSRTLFVTTALPYANGSFHIGHIMEYIQADIWVRSMRMAGHTVHF FT VGADDAHGAPIMLKAEKEGITPQALVARYAAERPRYLDGFHIRFDHWHSTDTPENVALS FT QEIYRALKSEGLIETRSIEQFYDPVKGMFLADRYIKGECPRCHAKDQYGDSCEVCGAVY FT APTELINPYSALTGAAPVLKSSDHFFFKLSDPRCVEFLQQWTTGANRQGVKHLQAEVQA FT KTREWLGGDDGEAKLGDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKSYCAA FT KGLDFDALLDPAGPTEQVHFIGKDIIYFHALFWPAMLKFAGRKTPDQLNVHGFITVSGE FT KMSKSRGTGISPLRYLEIGMDAEWLRYYMAAKLNARVEDMDFNPEDFVARVNSDLVGKY FT VNIASRAAAFITRHFDGELAYDGDTDALAAEFAQQAESIRAAFEAREYNRAVREIMAHA FT DRINQAFDAAQPWVMAKGIGAADAATRARLQDICSRALAGFKALSVMLAPVLPALASRV FT ARELFGANADFAWGDAQQLPQRVAPFKHLMQRVDPKLLDDLFEPPAAEASAPAALPGGE FT ALADTITIDDFAKIDLRIARIVNCEEVEGSTKLLRLTLDVGEGRHRNVFSGIKSAYQPQ FT DLVGKLTVLVANLAPRKMKFGVSEGMVLAASHADEKAEPGIYVLEPWPGAQPGMRVR" FT misc_feature complement(800211..800507) FT /note="HMMPfam hit to PF01588, Putative tRNA binding FT domain, score 4.4e-31" FT misc_feature complement(801126..802277) FT /note="HMMPfam hit to PF00133, tRNA synthetases class I (I, FT L, M and V), score 6.3e-06" FT misc_feature complement(802212..802247) FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS complement(802530..802802) FT /transl_table=11 FT /locus_tag="BPP0756" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0181" FT /protein_id="CAE40165.1" FT /translation="MVNTLFRFFSAALFALLGLIGMMMALVFMASTAIAVGVLYLVAKV FT RGKPFGVRAYWSQRQAARPGPFQAASAPFGQPRGDVIDVEAREMR" FT misc_feature complement(802677..802742) FT /note="1 probable transmembrane helix predicted for BPP0756 FT by TMHMM2.0 at aa 20-42" FT misc_feature complement(802698..802802) FT /note="Signal peptide predicted for BPP0756 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.867 between residues 35 and 36" FT CDS 802901..803983 FT /transl_table=11 FT /locus_tag="BPP0757" FT /product="putative iron sulfur binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0182" FT /protein_id="CAE40166.1" FT /translation="MMSITIEQIRGALAGVADPQTGLELNVCVKDRDIHLAADPAALTI FT ELGYPAGGVADSVRALAGAALAAAGLGAVRVAVTWNVIAHAVQPGLKPLPQVRNIIAVA FT SGKGGVGKSTTAVNLALAAEGARAGLLDADIYGPSVPAMLGLAGRPESRDNKTMEPLVG FT HGLQANSIGLLIDADAPAIWRGPMVTQALEQLLRQTNWRDLDYLVVDMPPGTGDIALTL FT AQKVPVAGAVIVTTPQDIALLDARKGLRMFQKVHVPILGVVENMAVHICPQCGHAEHIF FT GAGGGRRVAEQYEVPWLGSLPLQRAIREQTDAGNPTVAAEPDGEVAGIYRDIARRVAAR FT IAALPRDMAGKLPAVVVRPA" FT misc_feature 803216..803239 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 803501..803551 FT /note="PS01215 Mrp family signature." FT CDS 803987..805891 FT /transl_table=11 FT /locus_tag="BPP0758" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0183" FT /protein_id="CAE40167.1" FT /translation="MHRILRVCPALLFALAAGQVHAKLPEVIVDPGGVPPAALQAINSA FT VDAIARLSEDQDGGEIDRLRRRARDATLAALATQGYFTPTVTLTPGTDVGGETWDIAIE FT PGPRARVASVDLKFTGRVARPEYAARIQKWRDDWALKAGQPFINGDWNKAKSGLLDAVS FT TRDFLLAHMTHSLAEVDAETAQVRLSVEIDSGPAVRMGALQTDGLQRVPESLVRRYVKY FT SEGAAYDQDKLDQWQQELQSTAFFRGAFVTLDQGARGGQDDVKVTAPGAGARAPGSSGL FT ASVAPAGDAEVAGGPTAAAPVLDSQGEITLPVDVRVVEAPPKRLAVSLGVDDEAGVRFE FT TIYRQNVVFGQPVTMETGLGVDRLRQRAYLDFNLPPDERGRKDSFGLLFDHSDVQGLDV FT TRYALGVTRLQERKGAGDSRVEYETRWGGLLAHDHVKIDGGDEYDLPTATLTAEWLRRD FT VNSKYDPREGNLIAVGGGVGATLDDGQPYMRLRLRGQKWWPIGKLDVLTLRGEVGRLWS FT NGRTRVPDDFGFRTGGARSIRGYRYQSIGVEQDDAIVGAPTLAVASVEYDHYFNERWGI FT GVFVDAGDAAESFGDMDIAVGYGVGARVRTPAGPLFLDVAYGQRERDLRLHFSLGIAF" FT misc_feature 803987..804052 FT /note="Signal peptide predicted for BPP0758 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT CDS 805888..809526 FT /transl_table=11 FT /locus_tag="BPP0759" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0184" FT /protein_id="CAE40168.1" FT /translation="MSKIWGVVRHILVWWVPGVAMLAALACGFVFWTVASQNGTRLLLD FT TVARQLDGEIAGVRGSVLRGLRVDRIRLSVADVDVAVDDLRLDVAWRALGQRLLHVREL FT AATRVEVGLHTPATPPPDSDEPFALRLPVELALDRLSLGEFVLRQDGEPLPVSAGELQA FT SLAAGRHGARLTLDSLRVTHAVGTLRAQGRLDVASLAQPWPLTASLDLQAQGSGPESPL FT CLAPLLDARDKTAKDKAAKDKGKDKGKDKGKDKGKDDAGEKPDEPADPCGLALQVQAQG FT TLEQLEAELTGAGQGLALEARAGLLPQAPFPLRTASLKLTREDKSSLAATLDWQPQPGQ FT PGRDRVVATFEAERLDLQRLAGEAIPPAMLSARGGLDAEVDDLSRLHRATLTLDVTKGS FT SWNRHPLAGKVAASVSALGDPPGAFATAAPAQPHALPGRLRVDQLDVDLQLGPNRVRAQ FT GKLDERAGALKLDAQAPRLDAFWPGIPGAASVKAALDGALARHRGRIEAAYTPADARAR FT VLGRARAQAQLEFSGGWGAGPAAEGAAAGWRGSVSRLTADSAGFALALERPVTLAYVPE FT ALAPQWQWQVGATTLALTFPDKQRVALAHAASRGGAGRWETAGRADALVITAAMVRQIL FT VALDPEAVARAERDSGSPVNAPVPAAQRRISLDASWDLKFAGALAGKVRVARRDGDLRI FT PGDPPIPLGLRTLVLEANATPTGGQASRLDARLDMATARMGAINGTASATLGGLALDPR FT QPIRVALDADVTDLAWLGLFVGDTLEVGGMLKANVRAQGSLDGKWNASGTVNGDKLRVV FT RIDDGVRLIDGTLRARLQDDRVILDSLRFPASLRVMPAEWRTREWVSTNPDAKGGYLEA FT TGQWELSAARGQVRLQLHRFPALQRSDRYGMVSGVVTLDAALPRISINGDITADAGWVS FT LEILQGVLTLDDDVKVVRAGQKNAQGDGPPLQIDMNLKVDMGPRFYITGMGLDAGLLGS FT IQIRLQEGRLTGYGALRTRGGGIEAYGQKLRLRRGTLTFQGRLDNPLLDIEALRTGEQV FT EAGVRVAGTAQRPRIDLVSYPDVSDVEKLSWLVLGRGPDASGGDTALLLSVGTALLGGG FT QPFYKQFGLDDVSVRSGAIGSSGSLLPDRTVAAGVNRDSDADLATQFLVASKRFANGIT FT LSVEQALAGSETVGRASYRLARGLSLDLKAGSVNGIALVYRILLDD" FT misc_feature 805888..805965 FT /note="Signal peptide predicted for BPP0759 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.928) with cleavage site FT probability 0.359 between residues 26 and 27" FT misc_feature 805921..805989 FT /note="1 probable transmembrane helix predicted for BPP0759 FT by TMHMM2.0 at aa 12-34" FT misc_feature 805936..805968 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 809587..810150 FT /transl_table=11 FT /gene="dcd" FT /gene_synonym="dus" FT /gene_synonym="paxA" FT /locus_tag="BPP0760" FT /product="deoxycytidine triphosphate deaminase" FT /EC_number="3.5.4.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP0185" FT /protein_id="CAE40169.1" FT /translation="MSIKSDRWIRRAAEAGMIEPFEPGQVRTAGGNRIVSYGTSSYGYD FT VRCADEFKIFTNINSTIVDPKQFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVL FT TICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKIYAGEGCAQMLFLESDE FT VCETSYRDRGGKYQGQRGVTLPRT" FT misc_feature 809758..810144 FT /note="HMMPfam hit to PF00692, dUTPase, score 0.0031" FT CDS complement(810158..810580) FT /transl_table=11 FT /locus_tag="BPP0761" FT /product="conseved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0186" FT /protein_id="CAE40170.1" FT /translation="MPAPATVASPVVTCLRYRNASAAIEWLVHAFGFEAQRIVPGPADT FT IVHAQLTLGSGMIMLASVTDTPFSRYMKQPDEVGGVETQSVYLVVADPDQAYRDAQAAG FT AEILIDIADADYGGRGFSCRDPEGHIWSVGSYDPWQ" FT CDS complement(810608..811027) FT /transl_table=11 FT /locus_tag="BPP0762" FT /product="putative lyase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0187" FT /protein_id="CAE40171.1" FT /translation="MQAQVLINIDVPDAARAALFYERAFGLRPQRRLGPQAIEMAGAAV FT PFYLLEKATGSQAATGTSQGRDYARHWTPVHLDFVVDDCDRAVATAVAAGAMLEDPPHS FT HAWGRIAHLSDPYGNGVCILQFLGEGYDALAAAAP" FT CDS complement(811056..811574) FT /transl_table=11 FT /locus_tag="BPP0763" FT /product="putative acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0188" FT /protein_id="CAE40172.1" FT /translation="MNLSTIRPLTPEDAAEFQRVRLAALREAPEAFGSSYEEESVDTIA FT QWRARLAPREGYVLLGAFVDGALAGVGGVARGHTMKQRHKAEIWGIYVVPAQRRGGLAR FT QLTEALLARAARMTGVRHVLLSVGADNGAAHALYASLGFAEYGREPDAMLVGGRLLANI FT LMIRPLAAR" FT misc_feature complement(811143..811397) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 3.5e-14" FT CDS join(811627..811842,811846..812124) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0764" FT /product="hypothetical protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0189" FT /db_xref="PSEUDO:CAE40173.1" FT variation 811843..811845 FT /note="In-frame TAG stop codon in parapertussis; CAG in FT pertussis" FT CDS 812279..814549 FT /transl_table=11 FT /locus_tag="BPP0765" FT /product="probable orn/arg/lys decarboxylase" FT /EC_number="4.1.1.19" FT /note="ortholog of Bordetella pertussis (BX470248) BP0190" FT /protein_id="CAE40174.1" FT /translation="MKFRFPIFIIDEDYRSENASGLGIRALASAIEAEGVEVIGVTSYG FT DLSSFAQQQSRASAFILSIDDEEFDVDSPEDVAGAIKNLRTFIGELRFRNADIPIYLYG FT ETRTSEHIPNDILRELHGFIHMFEDTPEFVARHIIREARSYVDGLLPPFFRELVKYAQD FT GSYSWHCPGHSGGVAFLKSPVGQMFHQFFGENMLRADVCNAVDELGQLLDHTGPVAESE FT LNAARIFHADHCFFVTNGTSTSNKVVWHANVAAGDVVVVDRNCHKSILHAITMTGAIPV FT FLRPTRNHLGIIGPIPLDEFDPENIRRKIEANPFAREALNKKPRILTLTQSTYDGVIYN FT VEMIKEKLGTYVDTLHFDEAWLPHAAFHEYYRDMHAIGPDRPRSQDAMVFATHSTHKLL FT AGISQASQIIVQESESRKLDRNLFNEAYLMHTSTSPQYAIIASCDVAAAMMEPPGGTAL FT VEESIREAMDFRRAMRKVASEFGKDDWWFKVWGPNRLAPEGIGHRDDWVLESGDHWHGF FT GDLAPGFNMLDPIKATIITPGLDMSGSFGESGIPAALVSKYLAEHGVVVEKTGLYSFFI FT LFTIGITKGRWNTLLTALQQFKDDYDRNQPLWRILPEFCRGHRRYERMGLRDLCQQIHE FT AYRERDVARLTTEMYLSDMVPALKPSDAFARMAHREVERVEIDQLEGRVTGVLLTPYPP FT GIPLLIPGERFNRTIVQYLQFAREFNERFPGFETYIHGLADEEGPDGAKRYYVDCLKDA FT GEQ" FT misc_feature 812729..814087 FT /note="HMMPfam hit to PF01276, Orn/Lys/Arg decarboxylase, FT major domain, score 3e-185" FT misc_feature 813452..813496 FT /note="PS00703 Orn/Lys/Arg decarboxylases family 1 FT pyridoxal-P attachment site." FT misc_feature 814109..814501 FT /note="HMMPfam hit to PF03711, Orn/Lys/Arg decarboxylase, FT C-terminal domain, score 4.3e-30" FT CDS 814598..815830 FT /transl_table=11 FT /locus_tag="BPP0766" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0191" FT /protein_id="CAE40175.1" FT /translation="MSSREYPVSMFDVAVIGAGAAGMMCAAVAGQRGLRVVLIDHAAKL FT AEKIRISGGGRCNFTNLGAGPANFLSDNPHFCRSALAGYTPQDFLGLLRRHRVHWHEKH FT RGQLFCDDSSETIIEVLRAECGQGGVAWRMPCRVDEIARREGGGFTLRTSTGAIDARAV FT VVATGGMAIPQLGATDYALKVARQFGLKVVEPRPALVPLTFDPAQWQPFAALSGVALEV FT TLSTGQGKGRAAFLEDLLFTHRGLSGPAILQISSYWKPGEAIVLDLAPGRDLAAELIGA FT KPGNRQQLHTVLAGLWPRRLADTWLDVAGRAVGADLAAARLADVPDRTLRALAALIHDW FT RLVPSGTAGYKKAEVMRGGVDTRALDQKSMQARGVPGLYFIGEAVDVTGWLGGYNFQWA FT WASGYACGNAL" FT misc_feature 814598..814684 FT /note="Signal peptide predicted for BPP0766 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.778) with cleavage site FT probability 0.687 between residues 29 and 30" FT misc_feature 814634..814687 FT /note="1 probable transmembrane helix predicted for BPP0766 FT by TMHMM2.0 at aa 13-30" FT misc_feature 814760..815809 FT /note="HMMPfam hit to PF03486, HI0933-like protein, score FT 1.7e-130" FT CDS 815876..816568 FT /transl_table=11 FT /gene="sodA" FT /locus_tag="BPP0767" FT /product="superoxide dismutase [Mn]" FT /EC_number="1.15.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0193" FT /protein_id="CAE40176.1" FT /translation="MVNGNDYHLSLPNANAGDRMPYVLPALSYAYDALEPHIDARTMEI FT HHTRHHQTYVNGLNAALEGAGLDSEEPVEQLLRRIPALPPGIHGAVRNHGGGHANHSLF FT WTVMSPSGGGRPDGRLAADIQAQLGGHDAFQAAFTQAALGRFGSGWAWLTVTPAGRLRV FT DSSANQDSPLMEGNTPILGLDVWEHAYYLQYQNRRPEYIEAFYRVVDWAEVARRYEIAL FT AELGREAA" FT misc_feature 815933..816202 FT /note="HMMPfam hit to PF00081, Iron/manganese superoxide FT dismutases, alpha-hairpin domain, score 7.1e-44" FT misc_feature 816212..816544 FT /note="HMMPfam hit to PF02777, Iron/manganese superoxide FT dismutases, C-terminal domain, score 4.7e-61" FT misc_feature 816425..816448 FT /note="PS00088 Manganese and iron superoxide dismutases FT signature." FT CDS join(816565..817125,817131..817463) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0768" FT /product="probable metal transporter (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0194" FT /db_xref="PSEUDO:CAE40177.1" FT misc_feature 816565..816651 FT /note="Signal peptide predicted for BPP0768 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.671 between residues 29 and 30" FT misc_feature join(816601..816669,816697..816765,816802..816870, FT 816883..816951,817030..817098,817126..817194, FT 817213..817281,817294..817362,817381..817440) FT /note="9 probable transmembrane helices predicted for FT BPP0768 by TMHMM2.0 at aa 13-35, 45-67, 80-102, 107-129, FT 156-178, 188-210, 217-239, 244-266 and 273-292" FT misc_feature join(817012..817125,817131..817448) FT /note="HMMPfam hit to PF02535, ZIP Zinc transporter, score FT 4e-25" FT variation 817114..817128 FT /note="(CGCGG)3 in parapertussis; (CGCGG2) in pertussis" FT CDS 817858..818958 FT /transl_table=11 FT /gene="gcvT" FT /locus_tag="BPP0769" FT /product="glycine cleavage system T protein" FT /EC_number="2.1.2.10" FT /note="ortholog of Bordetella pertussis (BX470248) BP0195" FT /protein_id="CAE40178.1" FT /translation="MSAPLKRTPLAEEHLAAGARMVDFGGWDMPLAYGSQLEEHHAVRQ FT DAGMFDVSHMLNVDVGGADATAFLRRLVANDVARLATPGRALYSCMLNPQGGIIDDLII FT YYFAPDQWRVVVNAGTADKDIAWMQRVAAADGFDVAIAPRRDLAMVAVQGPNARAKVWA FT ARPAWQAASEPLAPFSAAAVEAGTLVARTGYTGEDGFEIVLPADAVVQLWRDLLAQGVR FT PCGLGARDTLRLEAGMNLYGQDMDELVHPDQAGLSWTVALKDEARRFVGRDAIEQFAVP FT RAFVGLKLQERGVMRAHMPVRCAQGMGELTSGTMSPTLGVSVGFARVPVGVQPGDAVEV FT EIRGKWVPALVCKLPFVRHGKAVEHS" FT misc_feature 818002..818934 FT /note="HMMPfam hit to PF01571, Glycine cleavage T-protein FT (aminomethyl transferase), score 1.3e-117" FT CDS 819103..819414 FT /transl_table=11 FT /gene="gcvH" FT /locus_tag="BPP0770" FT /product="glycine cleavage system H protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0196" FT /protein_id="CAE40179.1" FT /translation="MFVVGITDNAQEQLGDLVFVGDVKVGATLKAGETAGVVESVKAAS FT DIYAPVDGEIVAFNDELEANPSLINESAYTAWIFKIKPANAADLDKLLDAAGYQAVAG" FT misc_feature 819103..819408 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01597, Glycine cleavage H-protein, FT score 2.8e-27" FT CDS 819474..822338 FT /transl_table=11 FT /gene="gcvP" FT /locus_tag="BPP0771" FT /product="glycine cleavage system P protein" FT /EC_number="1.4.4.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP0197" FT /protein_id="CAE40180.1" FT /translation="MSRAPDTHSDFIPRHIGPSDEDQATMLAAIGAASLDALIDEVVPP FT RIRSRAPLALPAARSETDVLQDLKRMAARNQIYRNYIGQGYYGTHTPNVVLRNVLENPA FT WYTAYTPYQPEISQGRLEALLNYQTMVADLTGLDISNASLLDEGTAAAEAMTLARRGSR FT SSSPVFFVSQHCHPQTLEVVRTRAEGLGIELVIGDESRGLPECFGVLLQYPHSLGGVAD FT YRELAQAAHAQGAVVACVTDLLALALIEPPGQWGADIAVGSAQRFGVPFGFGGPHAGFM FT ACRDAYKRNMPGRLVGVSKDAQGNPALRLALQTREQHIRREKATSNICTAQVLLAVMAG FT LYAVWHGPRGVRRIAERVQSLTGALRAALAGLGVKVANDTWFDTLLLETGVATPAILAA FT ADCARTNLRQVDGARLAVSLDETVTLADLQALVNVFAAGLGKDEVALPAPQASLDGIPA FT AVRRQGPILSHPVFSSVQSETDMLRYLRKLADKDLALDRTMIPLGSCTMKLNATAEMIP FT ITWPEFALIHPFAPASQTPGYRELIDGLSAQLCEITGYDGISLQPNSGAQGEYAGLLAI FT RAYHQANGQPQRNVCLIPASAHGTNPASAQLAGMDVVVVASDANGNVDLADLRARIAQV FT GERLAALMITYPSTHGVFEEAVTEICDAVHEAGGQVYLDGANMNAMVGVAQPGKFGSDV FT SHLNLHKTFCIPHGGGGPGVGPVAVRAHLAPYLPGVLDAQGRLDPEAKVGPVSAAPYGS FT AGILPIPYVYIALMGAEGLRRATEVAILNANYIAARLRDHYPVLYAGRNGRVAHECILD FT VRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIA FT IRAEIAQIESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPP FT VARVDNAYGDRNLVCACLPVEAYA" FT misc_feature 819510..820778 FT /note="HMMPfam hit to PF02347, Glycine cleavage system FT P-protein, score 1.8e-247" FT CDS complement(822798..823583) FT /transl_table=11 FT /locus_tag="BPP0772" FT /product="putative GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0198" FT /protein_id="CAE40181.1" FT /translation="MTIIWITKRCTMAAAMKTVETNPNPLGPIKAVRSRDLLADALREQ FT ILSGARPSGVALPSERELTEETGLSRAAVRDALRVLESEGLIETRQGRYGGSVVKLPAN FT DALARPVALFARARGISLQEMIEARVAIEPTIAELAALRRTPEDLQALIQATDLLQEAL FT PRVEQFLDLNVRWYFALADACHNDLLRAFIVSIAGLILAATSREGQTPEPTRRLILQSH FT RRVVDAVIAGDAPAARRRMERHVAGYQEHYERLGLTPSA" FT misc_feature complement(823287..823472) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.2e-11" FT CDS 823608..824819 FT /transl_table=11 FT /locus_tag="BPP0773" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0199" FT /protein_id="CAE40182.1" FT /translation="MAAVSSSVPPTPLGGVRVLDLSKVLAGPLCTQYMADMGADVIKVE FT AAGQGDDTRGWPPFQDGQAAVFLSCNRNKRSIALDLKSAHGRAVVQRLAAWADVVVHSF FT GPGVAQKLGVDWEALSEINPRLVYCAISGFGPVGSLSHGKGFDVVLQAFCGMISITGET FT EGGAVRSPFSPVDQATGLHALIGILAALRQRDASGRGVTVDASLFDTALGFMGYFMQGY FT WARGTEPARAGAGHESLCPYQDFATADKPIILGIANDALWRAFCTLAGRPELVSDPRFA FT TNAQRVANRAQTLAATRELLAARTRGEWLPALEQAGIPCSPIHTLAEVDAHPHTRESGM FT VFDYPETGADTGPLKGVAQPVRFDGMRLTTPKRPPSLNQDWASVLADAGYSDPEVRDLL FT QQMA" FT misc_feature 823836..824402 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 6.3e-63" FT CDS 824848..825816 FT /transl_table=11 FT /locus_tag="BPP0774" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0200" FT /protein_id="CAE40183.1" FT /translation="MMNVLIRRALCAAIASLAAAAAHAAYPEQPVRIVVAFAPGSGTDN FT VARYYATRLSEELKQPFVVENKPGANGSIAATQVARTQPDGYTLFLGSNSTLSAAPFLF FT KKLPYEPLKDFTAVARLSDIPSMLVVGADSPIRDFDQFIGKARAEPGRVTWANANTAHL FT AAGMALTKQAQLDMISVPYKSSPQALTDVIGGQVTAMVVDTSAGTAFVQQGKVRALAVT FT TARPVAAMPGVPSMSERFPGIDVYSWLGIVGPAGMPDEVVSVVNQAILKINASEDTVRF FT LRENAGAEPPPSSSPAEFTQFMHAQLEVWRKLLRDANVEPM" FT misc_feature 824848..824919 FT /note="Signal peptide predicted for BPP0774 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 24 and 25" FT misc_feature 824983..825804 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.2e-72" FT CDS 825813..826646 FT /transl_table=11 FT /locus_tag="BPP0775" FT /product="probable enoyl-CoA hydratase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0201" FT /protein_id="CAE40184.1" FT /translation="MSQQESRMSAPACVSEFVRYDVDAGVARITLDRPDRRNAIDVPMR FT AALLAAVQAATADPAVRAVVLTGAGGHFCSGGDVSTMRGASMSAEQGRDRMAPIGACAR FT ALLEMPKPVIAAVDGIAFGGGFGLCLCADLVLATPAARFCLSFMRIGLVPDFAAAFTLP FT RLVGLQRARQLIYTAAEIDGRQALEYGLVSELVDAGRLAPRAAEVATAMAGMPATAFAL FT TKQALLRSSSSELAAMVEMEMTSQGVAFNTGYHQQAVERLLEKKPPLYSFPAPTA" FT misc_feature 825891..826403 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 6.8e-45" FT misc_feature 826152..826214 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(826697..828721) FT /transl_table=11 FT /locus_tag="BPP0776" FT /product="putative exported protein" FT /note="Similar to Yersinia pestis putative exported protein FT Ypo2262 SWALL:Q8ZEB8 (EMBL:AJ414151) (514 aa) fasta scores: FT E(): 5.1e-35, 26.56% id in 527 aa, and to Escherichia coli FT O157:H7 hypothetical protein YdgA or Z2617 or Ecs2320 FT SWALL:Q8X676 (EMBL:AE005385) (502 aa) fasta scores: E(): FT 2.5e-33, 26.78% id in 489 aa" FT /protein_id="CAE40185.1" FT /translation="MKKSIGITAGVIVVLAGGWLGGTWYTGKRIETETQQRLGVLNEKL FT AAVVPGYTLRVDQLKYERGFFTTQARYGLSLSQDIKEESGTVTPLPLGSTEFDARFEHG FT PFPRSALASGQFLPQMAFVHAELARTELVKPLFELTKNAAPLWSDTIVSYSGNASTRSG FT LAPIDFTEDDVTLSFSGATLTSTFQRATRSGTARLDAEYVRFTADGDQDTQMSATGWSV FT DMRSHQGKHGFTLGESTMAIKRIAMIDKRESLDISLDDLSYRALATEDGDYIDIEAAYK FT TGPLTVNKIPFGSGELNVKVSRLDGQALKALSDGYNQLLRGYFATGETDEGLKDEQLTM FT LIENGGRLLAGGPSLSLGPVAWRTEKGESSLMSSIVLVKPATTSGELTPREYLEEAVKA FT IDVKMVVSKPMVRDLAIHYETSQGKTPEEAAKEADETIDAFAGMAEILNIGRNDGDKLV FT GTFTYAAGVAKLNGRDVPVNELFDNLYDSASASLDDDEHNHEDDAAMSAEAASEAVEAA FT AEAAAAEAAQEAADAAAWATEGDSLRSVNAGLLTSILAEGGYDSTTEEGASGPVIVIDA FT NGLPLRDLRAELYCIDDDECMDVSMKASFGKRKTSLKALNAWNQKYRWTRAYLDDDNQA FT VLRMDLSAEGGVGRENLSIMVNTFMQMVGNFEDEVYAAR" FT misc_feature complement(828641..828706) FT /note="1 probable transmembrane helix predicted for BPP0776 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(828674..828721) FT /note="Signal peptide predicted for BPP0776 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.721) with cleavage site FT probability 0.681 between residues 16 and 17" FT CDS complement(828849..830297) FT /transl_table=11 FT /locus_tag="BPP0777" FT /product="conserved hypothetical protein" FT /note="Similar to Yersinia pestis putative exported protein FT Ypo2262 SWALL:Q8ZEB8 (EMBL:AJ414151) (514 aa) fasta scores: FT E(): 8.7e-44, 32.04% id in 490 aa, and to Escherichia coli FT O157:H7 orf, hypothetical protein YdgA or Z2617 or Ecs2320 FT SWALL:Q8X676 (EMBL:AE005385) (502 aa) fasta scores: E(): FT 9.9e-35, 29.26% id in 492 aa" FT /protein_id="CAE40186.1" FT /translation="MKKSVAVTTGVIIVAVGGWLAGTWYTGQRIETESQTRLNEINAQL FT AAAFPEFPVRINQLKLERGFFTSQARYGVEVGKSEETGKPEATVEVDARIEHGPFAPGA FT LARGKLMPQLAFVHAEVANTEDLKKVFEVTKGATPLWSDTVVAYNGDSTSTGGLAAIDY FT SGDEGKFAFSGATFDGSYQRATQAAIGSLKADSLALDASADDDGGPLLFTLDGLAVTVD FT SRMGKSGLSIGDSALSVKRLEVKQPEGDAHLTVADMAYAARIGEQDEFINGEISYGAGE FT ITYNGIALGNGRAVFKAERLNAAAIKVVADEYNKAIKLQAEGKDPVPDNAEMRKLLMAQ FT ADTLLAGKPVLTLDPVQWKTAQGESVFNARVALSKPASSDLMAVDYFSQAIESIDASAT FT LSKPMIKALMVGYLQSQEGMDAQQAAAAADQQVSSLAGMAEMMNLGKNEGDNIVSKFHY FT AAGTVDLNGRKMPADQLLGSILGG" FT misc_feature complement(830217..830282) FT /note="1 probable transmembrane helix predicted for BPP0777 FT by TMHMM2.0 at aa 5-27" FT CDS complement(830473..831948) FT /transl_table=11 FT /locus_tag="BPP0778" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3163" FT /protein_id="CAE40187.1" FT /translation="MRWLLAMIKHETNTVSPVPTPLERFFRGSPEILAGERAIRAYENT FT DSGLGGYIEVARREGAEIVVPVAAESWPSAPTDRATYERLCGLVLDEARRGGFDAILLD FT LHGAMVAEGVEDAEGDLLRRLRDIAPAIPVGVTLDMHANIYDDIVRHATVISGFHTYPH FT VDIRAAGLRAANAIARTLRGEIKPVMSWANKPMLPHIMRQGTHAEPNKSLQARCKALES FT EGVIAASVFVGFPHADIREAGLSAVVCTDANLAQAEQYRDELLETAWRGRADWVFHAEP FT LAPTIARAKAIENGPVVLLDHYDNTGSGGTMDTTAVLAEILDQGLENVAFYAICDPQAA FT QQAAAAGVGATVTLPLGGKVAMPALRQASPPLHLTARVKLLFDGVYLNRGPMYRGVRND FT TGLTVVLDTGKVEIVVVSRHQEPFDINCLLSAGIDPLQKRYVALKSRVHWRAGFADMAT FT HVIECTGVGVTTSDYGQVEFRHVRRPVYPLDAI" FT misc_feature complement(830725..830745) FT /note="PS00307 Legume lectins beta-chain signature." FT CDS complement(831992..833650) FT /transl_table=11 FT /locus_tag="BPP0779" FT /product="putative ABC transpoter ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3162" FT /protein_id="CAE40188.1" FT /translation="MPYAPYPPAGDTSAAVLAIRNLSVSVCGAGNRVVRNLSLDVHAGE FT TVCVVGESGSGKSVTSLAVMGLLPEGILEVSGGSARVLGEDIVTASARRRRELRATRMA FT MVFQEPMTALNPVHRVGSQVDEVLRLHRRMPRAQRRAKVLEMFRSVHLPDVERIYDAYP FT HQLSGGQRQRIVIAMALILEPKLLIADEPTTALDVTTQKQILALIRELQDRHQTAVLFI FT THDFGVVAEIADRIVVMNRSDLTEAGTRDEILARPSQNYTRRLVSSVPSLVPTQREAPG FT GEPVLRITGLGRTYAERRSLFGATRTVVAASEVDLTLRRGEILGIVGESGSGKSTVARC FT IVRLIEPSAGRMLLGETDIARLSGAGLRPLRRKVQIVFQDPYRSLNPRRAVGESIIEGL FT LNFGMPRAQALVRAARTLGVVGLGPDVMRRYPHQFSGGQRQRLCIARALVMDPEVLVAD FT EAVSALDVSVQAQVLELIEQVRERTGVSVLFITHDLRVAAQVCDTIAVMQHGKVVETGA FT AQTVLTRPGHAYTRALIDAAPGRGWDFRNFRPLPA" FT misc_feature complement(832121..832690) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.9e-65" FT misc_feature complement(832307..832351) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(832646..832669) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(832925..833521) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.9e-58" FT misc_feature complement(833111..833155) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(833477..833500) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(833654..834553) FT /transl_table=11 FT /locus_tag="BPP0780" FT /product="putative peptide ABC transporter permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3161" FT /protein_id="CAE40189.1" FT /translation="MPTHSDAVADGALPENEPPQAGAWRRVRREFSGAPVLAALAVLAL FT VVGAALLAPWLGTVDPTAIDPGARLKPPFGDYLFGTDAFGRDIWSRVVYGARVSLVAGL FT GAALVSVTLGLVIGVIAGWFRTLDGLIMRTMDAVMAIPGILLAIALVSVTGASLATVLV FT AITIPEIPRVVRLVRGQILSVRGEPYVEAALALGTPLPLLLWRHLVPSTVAPLTVQGTY FT VFASAMLTEAILSFLGAGIPPEIASWGNIMSEGRMYFRMLPGLILFPGLFLSLTVLSVN FT ILGDALRDALDPKMTRRT" FT misc_feature complement(join(833705..833770,833831..833887, FT 833927..833992,834053..834118,834182..834247, FT 834386..834451)) FT /note="6 probable transmembrane helices predicted for FT BPP0780 by TMHMM2.0 at aa 34-56, 102-124, 145-167, 187-209, FT 222-241 and 261-283" FT misc_feature complement(833783..834013) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.0033" FT misc_feature complement(833924..834010) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS complement(834556..835497) FT /transl_table=11 FT /locus_tag="BPP0781" FT /product="putative ABC transporter permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3160" FT /protein_id="CAE40190.1" FT /translation="MLAFIARRLLATIPVLIMVAVVVFAILRASPGDPAIIMAGDAATP FT ERIAQIRHVMGLDQPLVKQFFIWTGRLVRGDMGTSLMSGVPVTQLIGQRLEPSLSLAVI FT TLAFTLAVAIPLGILAAWRRGRLLGRAVMGFSVLGFSVPVFVTGYVLIWAFAIKLGWFN FT VQGYTPLAQGFWPYLHRLVLPSLALSTVYVALIARITRTSIIEVMGEDFIRTARAKGLG FT ETGVLLGHALRNAAVPIATVIGVGVALLISGVVVTESVFNIPGLGRLVVEAVMARDYPV FT IQGLTLFFAFVYVFINLVVDCAYTVFDPRIRY" FT misc_feature complement(join(834577..834642,834727..834792, FT 834901..834966,835027..835092,835132..835197, FT 835405..835470)) FT /note="6 probable transmembrane helices predicted for FT BPP0781 by TMHMM2.0 at aa 9-31, 100-122, 135-157, 177-199, FT 235-257 and 285-307" FT misc_feature complement(834673..834888) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.031" FT misc_feature complement(834799..834885) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature complement(835369..835428) FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT misc_feature complement(835423..835497) FT /note="Signal peptide predicted for BPP0781 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.916) with cleavage site FT probability 0.462 between residues 25 and 26" FT CDS complement(835543..837108) FT /transl_table=11 FT /locus_tag="BPP0782" FT /product="putative extracellular solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3159" FT /protein_id="CAE40191.1" FT /translation="MLKSVRIAALAGAMLLAAQGAGAETVIKAVMHSPLRLTDPHATTA FT YITTWHGYMIYDTLLATDADNKIQPQMLEKWEVSPDGKTYTMTLRPGQKWHDGKPVTAE FT DCVASIKRWAGGDGMGRTLMKFTDRIEAVDDQTLRIVMKEPTDLALRALSKPTGTAAFM FT MPKRIADIPIGQPITDMTGSGPFKVAEFKPGVKTVYVRNADYVPRQEPASGLAGGKAVH FT IDRVEWNVMPDALTTANALLGGEIDFVEQFPYDLLPMVEGNPALKEEALSPVGYFTMYR FT FNFKYPSFDNKKIRQAAMYAIGQEDVMKALVGNPKYWQTCASLWGCGTPFETDIGKDMV FT VPSNIEKARALLKEAGYDNTPILVMHATDVGTLSAQPVVMAQALRKAGFNVNLAAMDWQ FT SVATRRASKAAPAQGGWNIHNTNWYATDIMDPVRSAPAAANGDNAWFGWPDIPEIETLR FT TRFALSSDPAEQKKLAEEAQRIGIDEGLYVPLGQMSVPTVYTTKLSGLVHAPVFAFWNV FT KKAP" FT misc_feature complement(835552..837108) FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5, score 2.4e-18" FT misc_feature complement(837040..837108) FT /note="Signal peptide predicted for BPP0782 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.917 between residues 23 and 24" FT CDS complement(837394..838887) FT /transl_table=11 FT /gene="mmsA" FT /locus_tag="BPP0783" FT /product="putative methylmalonate-semialdehyde FT dehydrogenase [acylating]" FT /EC_number="1.2.1.27" FT /note="ortholog of Bordetella pertussis (BX470248) BP3158" FT /protein_id="CAE40192.1" FT /translation="MKTIPHFINGQPYEGRNGRYTQGFNPATGEVSSSIPLASAQDVDT FT AVAAAAAAFPAWSETPPLKRARILFKFKALLDEHQDELAALITAEHGKVFSDAKGEVTR FT GIEVVEFACGIPHLLKGQYTDQIGGGIDNWSMRQPLGVVAGITPFNFPMMVPCWMFPVA FT LACGNTFVLKPSERDPSAALRLAELLKEAGLPDGVFNVVQGDKQAVDALIAHPQVEALS FT FVGSTPIAEYIYAEGTRRGKRVQALGGAKNHMVVMPDADLDQVTDALMGAAYGSAGERC FT MAISVAVAVGEVADEVVARLAPRVRALVVKDGMQADAEMGPQVTAQHRAKVTGYIEDGQ FT ACGATLVVDGRGLQVPGNEGGFFLGGTLFDHVTPAMNIYREEIFGPVLCIVRVPDFAAA FT VELINAHEFGNGVSCFTSDGGIARAFARQIKVGMVGINVPIPVPMAWHSFGGWKRSLFG FT DHHAYGEEGVRFYSRYKSVMQRWPDSIGKGAEFTMPVAK" FT misc_feature complement(837445..838857) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 6.4e-167" FT misc_feature complement(838033..838068) FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS complement(838919..840202) FT /transl_table=11 FT /locus_tag="BPP0784" FT /product="omega-amino acid--pyruvate aminotransferase" FT /EC_number="2.6.1.18" FT /note="ortholog of Bordetella pertussis (BX470248) BP3157" FT /protein_id="CAE40193.1" FT /translation="MPFTANRQFKSQPRLLARAEGMYYTSTDGRQILDGTAGLWCVNAG FT HCRPEIVQAIASQAGEMDYAPGFQLGHPLAFEAATAVASFMPAGIDRVFFTNSGSESVN FT TALKIALAYHRARGDAQRTRLVGRERGYHGVGFGGISVGGISANRKTFSGALLPAEDHL FT PHTHSLEHNAFSKGQPAWGEHLADELERIVALHDASTIAAVIVEPMAGSTGVLVPPKGY FT LQRLREITARHGILLIFDEVITAYGRLGSPTAAEHFGVTPDIITMAKGVSNAAVPAGAV FT AVKREVHDAIVNGVQGGIEFFHGYTYSAHPLAAAAILATLGIYRRDDLFGRARDLSPAF FT EKAAHALQGAPHVIDVRNIGLVAGIELASRPDAPGARAAEAFRKCFDSGLMVRYTGDIL FT AVSPPLIIDEAQIGELFEGIGKVLKEIA" FT misc_feature complement(838925..840196) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00202, Aminotransferase class-III, FT score 6.2e-123" FT misc_feature complement(839378..839407) FT /note="PS00599 Aminotransferases class-II FT pyridoxal-phosphate attachment site." FT CDS join(840428..840634,840634..841881) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0785" FT /product="probable GntR-family transcriptional regulator FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3156" FT /db_xref="PSEUDO:CAE40194.1" FT misc_feature join(840485..840634,840634..840660) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.2e-07" FT variation 840632..840634 FT /note="CTG in parapertussis; CTG(GTTG) in pertussis" FT CDS complement(841845..842348) FT /transl_table=11 FT /gene="folA" FT /gene_synonym="tmrA" FT /locus_tag="BPP0786" FT /product="dihydrofolate reductase" FT /EC_number="1.5.1.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3155" FT /protein_id="CAE40195.1" FT /translation="MPMPATPLLSLVVAYSTNGVIGRDNALPWKLPGDLAHFKRTTLGH FT PIIMGRNTWESLGRPLPGRTNIVITRNPAYGAAGAVVVGSLDAAIQACGDAAVACVIGG FT AQIYAQALPLAQRVVATEVHAEIEGDAFFPPLPAGQWRETQRAAQPAENGLRYDFVEYE FT RVAG" FT misc_feature complement(841857..842327) FT /note="HMMPfam hit to PF00186, Dihydrofolate reductase, FT score 8.5e-65" FT misc_feature complement(842223..842291) FT /note="PS00075 Dihydrofolate reductase signature." FT CDS complement(842373..843344) FT /transl_table=11 FT /locus_tag="BPP0787" FT /product="putative thymidylate synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3154" FT /protein_id="CAE40196.1" FT /translation="MKQYLDLVQSILDQGAWQENRTGVRTLSLPGAALRFDLQQGFPAV FT TTKKLAFKSAIGEMVGFLRATRSAAQFRALGCKVWDQNANENEQWLANPYREGPDDLGP FT VYGVQWRHWPAYKLLPRSAGGQVADALARGYRQVAEVAENGAPHVLLYKAVDQLRQCLD FT TIHQSPGDRRILFHGWNWAQIEEMALPPCHLLYQFLPNAGTREISLCLYIRSNDVGLGT FT PFNLTEGAALLHLVGRLTGYKPRWFSYFIGDAHVYENHLPMLREQLTREPYPAPQLVLS FT DRIPDFAVTGKYEPQWLEQVEPGDFTLSGYQHHAPLTAPMAV" FT misc_feature complement(842379..843344) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00303, Thymidylate synthase, score FT 3.3e-93" FT CDS complement(843411..843848) FT /transl_table=11 FT /locus_tag="BPP0788" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3153" FT /protein_id="CAE40197.1" FT /translation="MQMECTIDWGGPAGMLFTASTGSGHVAVMDGAVDGGGHDLAPRPM FT EMLLAGTGGCTAYDVVLILKRGRHAVTGCSVKLQAERADADPKVFTRIHFAFTVTGSKL FT PRAAVERAVQLSHEKYCSASAMLEKTAELSFSVDIVDTQAA" FT CDS 843861..844640 FT /transl_table=11 FT /locus_tag="BPP0789" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3152" FT /protein_id="CAE40198.1" FT /translation="MGAALRAIKKRSYPLRTMVGGEPRPPTGRRDFPGSIHMSTSSSAS FT ALGRRAGPLDGLIGEIDRALRVLSGAATAARPYPAQAPEAPDALSERERRHAAGLMRVN FT HVGEVCAQALYRGQAAACREPAARELLRQAAAEEVDHLAWCNERLRELGSRPSLLNPFW FT YTGSFALGVLASYAGVPRNLGFMAETERQVEAHLDGHLRTLPVQDRRSRDIVQKMKEDE FT AQHRASAERAGGVPLPAPVRGAMRAMSKVMTSTAYWL" FT misc_feature 845305..856807 FT /note="Region possibly encoding a lipopolysaccharide FT O-antigen" FT CDS 845368..846471 FT /transl_table=11 FT /locus_tag="BPP0790" FT /product="probable glycosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3151" FT /protein_id="CAE40199.1" FT /translation="MTWLYICVVAFMVGGLIVASERWHGAFTGDSDLNKPQASHTRATP FT RVGGLAVLAGSLAGLLVLGPSNMTLTWLWPALFVAALPVFVAGLLEDITKDIGASKRLL FT AAFASAAIAWWLLGGVSRVGIAPVDWVLSFWPVSLIFTMFAVGGCTHALNIVDGMNGLA FT GMIATLMAVSISLVALQVGDMPIFMIAAALASATLGFLVWNFPFGRVFLGDGGAYFLGF FT MLAELAVLLVVRNPSVSPFYALAVLFYPVFETGFSIWRRRFKRGVPVDQPDALHLHQLV FT FRRLVRVTFSRGRRHAVPALCNALASPYMWVLALIGLVPATIWWDNAWFLCASLVVFAA FT VYTWLYMRLVSWRRPGWLLLPSVIRTH" FT misc_feature join(845377..845445,845506..845559,845569..845637, FT 845674..845742,845758..845826,845845..845913, FT 845923..845991,846010..846066,846076..846144, FT 846256..846324,846334..846402) FT /note="11 probable transmembrane helices predicted for FT BPP0790 by TMHMM2.0 at aa 4-26, 47-64, 68-90, 103-125, FT 131-153, 160-182, 186-208, 215-233, 237-259, 297-319 and FT 323-345" FT misc_feature 845584..846078 FT /note="HMMPfam hit to PF00953, Glycosyl transferase, score FT 6.1e-13" FT CDS 846478..847851 FT /transl_table=11 FT /gene="wbpO" FT /locus_tag="BPP0791" FT /product="polysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3150" FT /protein_id="CAE40200.1" FT /translation="MAPVPARGVLQRYKHVQTTYNSVAVTRLIGRFILRIDDVKLAVVG FT LGYVGLPLAVEFGKKRPVIGFDINERRIAALKAGHDHTLEVEDDELAQAGQLSYTAERE FT ELGKANVFIVTVPTPIDEYKQPDLTPLVKASETIGAVLKRGDIVIYESTVYPGATEEDC FT VPVLERVSGLKFNQDFYAGYSPERINPGDKAHRVNTIKKVTSGSTPEVAELVDQLYNEI FT ITAGTHKASSIRVAEAAKVIENTQRDVNIALINELALIFNKMGIDTEAVLQAAGTKWNF FT LPFRPGLVGGHCIGVDPYYLTHKAQSIGYHPEIILAGRRLNDSMGGYVVSQLVKAMAKR FT RIHVEGARVLLMGLTFKENCPDLRNTRVVDIVRELGEYHVDVDVYDPWVDPAEAEHEYG FT ITPVAKPAAGAYDAVILAVSHHQFVEMGAEAIRKFGKAEHILYDLKYVLAPDQADLRL" FT misc_feature 846592..847149 FT /note="HMMPfam hit to PF03721, UDP-glucose/GDP-mannose FT dehydrogenase family, NAD binding domain, score 8.7e-73" FT misc_feature 847174..847458 FT /note="HMMPfam hit to PF00984, UDP-glucose/GDP-mannose FT dehydrogenase family, central domain, score 4.3e-44" FT misc_feature 847525..847809 FT /note="HMMPfam hit to PF03720, UDP-glucose/GDP-mannose FT dehydrogenase family, UDP binding domain, score 2.8e-31" FT CDS 847863..848888 FT /transl_table=11 FT /locus_tag="BPP0792" FT /product="UDP-N-acetylglucosamine C4 epimerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3149" FT /protein_id="CAE40201.1" FT /translation="MTNRFETTCAQLRAQPQKWLVTGCAGFIGSNLLETLLGLDQAVVG FT LDNFATGHQHNLDEVRAAVTPEQWARFTFIEGDIRDLAACQRAVQGVDRVLHQAALGSV FT PRSLKDPITTNEVNIGGFLNMLVAARDAQVQAFVYAASSSTYGDHPDLPKVEERIGNPL FT SPYAVTKYVNELYADVFARSYGFSSVGLRYFNVFGKRQDPDGAYAAVIPKWTAAMIKGE FT DVVINGDGQTSRDFCFVENAVQANLLAAMAAPEGANQVYNVAYNARTTLTELFEHLRRA FT LAGQGVSYEKAPVYAEFRAGDVRHSQADIGKAGKLLGYEPAYDILRGLEAAMPWYTQFL FT R" FT misc_feature 847917..848882 FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 2e-115" FT CDS 848890..850260 FT /transl_table=11 FT /locus_tag="BPP0793" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3148" FT /protein_id="CAE40202.1" FT /translation="MKAIRRKLDAIHPDHQRIFKGAFRVAVFLILGKAAGAIKEMAVAY FT RYGVSDAVDAYQFTMTMATWLPVTIVGALSVVLIPVLVRLRRAGGHERDRFVRELQGWS FT LAAGLALALLTWMAWPHVLDWLGGGLSGTVDGMTHELLLAFAPVAALLLMAGISAARLR FT SHERHVNTLLDSVPAVTTLAWVMLAASADSVGPLLWGTLVGYAIQAAWLAWLAARADGG FT FWGWPAFTLRSPHWPELAAAAGVMLVGQVAMSFVGPLDQYAAANLGSNANATLGYASRL FT LSLVLGIGAVSVGRAALPVLADVQSRGDGARARAMALKWSALMVGAGAAAVVVGWLLAP FT WGVALLFERGAFTAENTQAVAQVLRWGLLQLPFYFGVLILVQLLASQNRYRIMALIAVA FT NFLLKAVLNTVLAPRMGTAGIMLATSLMYLLSFACYTVVALRPAPGADGGDDDREKR" FT misc_feature join(848950..849003,849070..849138,849199..849258, FT 849301..849369,849472..849540,849598..849666, FT 849727..849795,849853..849921,849976..850044, FT 850057..850125,850144..850212) FT /note="11 probable transmembrane helices predicted for FT BPP0793 by TMHMM2.0 at aa 21-38, 61-83, 104-123, 138-160, FT 195-217, 237-259, 280-302, 322-344, 363-385, 390-412 and FT 419-441" FT misc_feature 849016..850254 FT /note="HMMPfam hit to PF03023, Virulence factor MVIN, score FT 4.9e-07" FT CDS 850261..851397 FT /transl_table=11 FT /locus_tag="BPP0794" FT /product="putative glycosyltranferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3147" FT /protein_id="CAE40203.1" FT /translation="MPGPAERPLRVLIFIHSLHGGGAERVAADLSAHWARDGRAVMLVT FT QADASGDVYPLHPQVLRRTLDTAGEGGGWRGVLANLRRIRALRALIKDFQPDIVLGMMT FT TASVLAVLAARGLGCRVVATEHTHPPSQALSGMWLRLRRWTYPRAARVVALTRGTADWL FT RTHVPGSRLAVIPNPVHWPLPRTEPVLVPPADGRPRLLAVGRLHPDKGFDVLIDAYARI FT APRYPDWDLVILGEGDERAALQRRVDEAGLAQRVALPGRAGNVGDWYACAALYVLTSRF FT EGLSNTLLESMASGLMPVSFDCDTGPREIVRPGVDGVLVRPAGDAGAMAQALAAAIDDE FT PGRRAMAARAIDVRERFSARHVLDLWQQLFDDALSQAK" FT misc_feature 850810..851319 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 1.4e-39" FT CDS 851444..853369 FT /transl_table=11 FT /locus_tag="BPP0795" FT /product="putative asparagine synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3146" FT /protein_id="CAE40204.1" FT /translation="MCGIVGIWGPLRDKANVLAESCRRIRHRGPDSNGYWEDAEADLAL FT AHVRLAILDLTEAGHQPMVSACGRYVIVLNGEIYNHMELRERLQQDGLAPAWRGHSDTE FT TVLACFAGWGLEQTLQAAVGMFAIALWDRAERKLALMRDRMGEKPLYYGYSQANLLFGS FT ELKAFMPVPGFGRELDRNALASFMRHNYIPAPQSIYAGIRKLPPGAWVEIDAAQMRRGE FT LPEPQVYWSARRAADQGLGDRRRFESDAQAIDALEQVVSQAVRGQMLSDVSLGAFLSGG FT IDSSTVVALMQAQSAQPVRTFAIGFHEKGYNEAEHAKAVAAHLGTEHTELYVTAEDGLA FT VVPSLADMYDEPFADSSQIPTSLVTRMARQHVTVALSGDGGDELFGGYSRYFRVDNWWR FT KCAAMPGPLRHLAGAALRGSAALPGAGAWRGKVGKLGELLGADTRGEFYRLFVSYWADP FT GRVVIGGTEPLSPFEQPMEGSTFDAMMKLDTVTYLPDDILVKVDRAAMAVSLETRVPLI FT DHRVYEFAWQLPFEYKVRGGTGKWLLRQLLYRHVPQAMVDRPKRGFAVPLAAWLRGPLR FT DWAEALLDPARLRQEGWFEPEPILRKWREHLSGHRNWDSHLWGVLMMQAWLDRYRAGAG FT DEAGRR" FT misc_feature 851444..851461 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 851447..851902 FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II, score 8.9e-17" FT misc_feature 852170..853126 FT /note="HMMPfam hit to PF00733, Asparagine synthase, score FT 2.3e-53" FT CDS 853366..854499 FT /transl_table=11 FT /locus_tag="BPP0796" FT /product="putative glycosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3145" FT /protein_id="CAE40205.1" FT /translation="MKILLLVSSMHAGGAERVAATLANGWAARGDQITLMPTYSSKGTC FT FYPLSDDVELLWLADRAGTRSGGAVAAWQRLRALRAVVRERAPDVVVSFLTNVNVAAIL FT ATRGLKTPLIVCERTNPVVDTSIGRVWRVLRRVLYPLADMVTVQADATVEPFARQVPGL FT KQLCVIPNPLPPELFDATPAAGSGAAPAARKRLMAMGRMVPDKRFDLLIDAYAGLADEF FT PDWDLWIWGEGPRRDDLQAQVAARGLATRIHMPGRTAAPWDELAKADAFVLSSAVEGFP FT NVLLEAMSLGLPCAAFDCPSGPAEMTRGGRDALLVPAGQRDALRDALRDALGRLMRDPE FT LRRDLGRRAAQSVRQRYALPAVLAQWDALFERVRGGA" FT misc_feature 853900..854421 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 8.6e-35" FT CDS 854496..855650 FT /transl_table=11 FT /locus_tag="BPP0797" FT /product="putative glycosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3144" FT /protein_id="CAE40206.1" FT /translation="MTRILRVMHVITGLGQGGAESVLFRLATWPDQRVRHSVISLTDEG FT VYGTRLRAAGVPVHALGMPRGRVTLGGLLALRALLRRERPDAVQTWMYHADLIGGVAAR FT LAGIRAVAWGIRNSGEHLDRSSRSARLVLKLCARLSARLPAAIVCAAQDAATRHRRHGY FT DGARMVVIPNGYDLSRYAPDAQARERMRSLWGVAPETPLVGCVARWDPLKDHANLLAAL FT GGLVREGRDRGLQCALVGRGMSPGNAGLAALIDAEGLRGRVLLAGPSDDVPAVMNALDL FT HVLSSCAEGFPNVVAEAMACGTPCVATDVGDAAYIVGDTGGVAPAQQPAALAAAIEAAL FT AGIAARGRDAAGAAGRQRVLAEFDLRRMVESYEAVWRRISGERA" FT misc_feature 855051..855569 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 2.4e-25" FT CDS 855647..856777 FT /transl_table=11 FT /locus_tag="BPP0798" FT /product="putative glycosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3143" FT /protein_id="CAE40207.1" FT /translation="MTSPRRLLFVVNNPAFFLSHRLPLAEAARADGYEVHVATMDGPSV FT PDIVARGFAHHAIPMTRSGKQPLQELRSVWALVRLFRRLRPGLVHLVTIKPVLYGGIAA FT RLAGVPAMVAAISGLGFVFVAGGLKARLLRAAVGRLYRLALGHRNSRIVFQNTADRDVL FT ARLGAVRAAQVVMIRGSGVDLGQYRVVPEPAAPVTALMAARLLRDKGVREFVEAARLLR FT GRGLSVRMQLAGGVDPGNPASITPEQAAQWQDEGCVEVLGERKDIAALYGAAHMAVLPS FT YREGLPKSLLEAAACGRAVVTTDVPGCRDAIDPDVTGLLVPPRDAPALADAIARLAEDA FT SLRQRMGAAGRALAEREFGIEDVCRRHLAIYRALAR" FT misc_feature 855962..856030 FT /note="1 probable transmembrane helix predicted for BPP0798 FT by TMHMM2.0 at aa 106-128" FT misc_feature 856193..856705 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 3.3e-32" FT CDS complement(856785..858350) FT /transl_table=11 FT /gene="pgi" FT /locus_tag="BPP0799" FT /product="glucose-6-phosphate isomerase" FT /EC_number="5.3.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP3142" FT /protein_id="CAE40208.1" FT /translation="MPTPLPSSSAWLAFADAARHSSRRGARLRVIEAAGLRVDLTAQAH FT SDDLDSAAEDLLAQQDFDNARAQLFDGGPANWTEHRPAWHTALRAARPPTPVAGAILGE FT RDRLRRFVQDADMRGAYRHVLHLGIGGSDWGPRMVTRALRHNGLKREVRFASNVDSHAV FT ADALHHLDPHDTLIIVASKSFTTTEPLANAEVAMNWLRNAGVADPVRQVVAITANVDAA FT LDFGISPQHIFRFWDWVGGRYSLWSAIGLPVALALGCDALDELLAGAAAMDQHFLHTPM FT RRNAPLQMALAGVANRSVLGYGSLAITPYDSRLTHLVPWAQQLEMESLGKVAGHDGSPA FT GVPTGPVVWGMTGTDCQHTFFQWLHQDTAGAPVDFIVCEQADHPYDHFHKLLIANCLAQ FT RAALLRGKPFDEALKEARLVESDPQQAEILAHHRVHPGGRPSTLIMLPRLSAHALGALL FT AMYEHKVFAQGVLWGINPFDQWGVEYGKALARNIIRELENPSSEVNQQDPSTRYWIDAL FT RKQP" FT misc_feature complement(856809..858236) FT /note="HMMPfam hit to PF00342, Phosphoglucose isomerase, FT score 1.2e-158" FT misc_feature complement(856893..856946) FT /note="PS00174 Phosphoglucose isomerase signature 2." FT misc_feature complement(857574..857606) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(857601..857642) FT /note="PS00765 Phosphoglucose isomerase signature 1." FT CDS complement(858357..859739) FT /transl_table=11 FT /gene="pgm" FT /locus_tag="BPP0800" FT /product="phosphoglucomutase" FT /EC_number="5.4.2.8" FT /note="ortholog of Bordetella pertussis (BX470248) BP3141" FT /protein_id="CAE40209.1" FT /translation="MAHPFPASVYKAYDIRGSVPDQLDPVFARALGRALAASARAQGIG FT ALVVGRDGRLSSPDLAGALQEGIMEGGVDTLDIGQVPTPLVYFAAHTQGTGSGVAVTGS FT HNPPQYNGFKMMMGGQALYGPAVQALRPAMLAPAAAPGTWGERRQLDVVPAYIERIVSD FT VKLARPMKIAVDCGNGVAGALAPQLFRALGCEVDELYCEVDGTFPNHHPDPAEPRNLQD FT LIAHVTSTDCELGLAFDGDGDRLGVVTKSGQIIWPDRQLILFARDVLARCPGATIIYDV FT KCSRHVGVAIEQSGGVPLMWQTGHSLVKAKLAETGAPLAGEMSGHIFFKERWYGFDDGL FT YTGARLLEIVSRETDASRPLEALPQALSTPELKLEMAEGEPHALIVALQQQGEFASASR FT LVTIDGVRAEYPDGFGLARASNTTPVVVLRFEAETQPGLARIQQEFRQQLLRLAPQAKL FT PF" FT misc_feature complement(858378..858629) FT /note="HMMPfam hit to PF00408, FT Phosphoglucomutase/phosphomannomutase, C-terminal domain, FT score 1.6e-09" FT misc_feature complement(858630..858974) FT /note="HMMPfam hit to PF02880, FT Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha FT domain III, score 5e-35" FT misc_feature complement(858978..859280) FT /note="HMMPfam hit to PF02879, FT Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha FT domain II, score 5.3e-48" FT misc_feature complement(859305..859730) FT /note="HMMPfam hit to PF02878, FT Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha FT domain I, score 1.8e-35" FT misc_feature complement(859404..859448) FT /note="PS00710 Phosphoglucomutase and phosphomannomutase FT phosphoserine signature." FT CDS 859973..860629 FT /transl_table=11 FT /locus_tag="BPP0801" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3140" FT /protein_id="CAE40210.1" FT /translation="MIRLSLLTNLNGRWPMSADISFVSTRRRMAPGRVDLTAGGERRLD FT IPVHAGIDGSVEAGRAWERCVWRAARVLIAECPAPRLSARLEATLRGVAVRIARDRGWR FT GIGTVVFSLDVGTGMFRMIEARLCGLQQGGPAADAASGGHALEVRISACADSGRRGAHL FT LTYGATRGEALRRAYQALAKLPGLAQADRAFLMDRIASPAFCSGLTGSQLDRIAS" FT CDS 860721..862136 FT /transl_table=11 FT /locus_tag="BPP0802" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3139" FT /protein_id="CAE40211.1" FT /translation="MTLPSELRALLGPSHVLTGDDAEPFLLDWRRRYRGRALAVARPGS FT AEEVAAVVRLCQAHGAPLVPQGGNTGLCGGATPDDSGSAVVLSTTRLNRVRAIDTDNDT FT ITVEAGCVLQAVQQAAEQAGRLFPLSLAAEGSCTIGGNLATNAGGTQVLRYGNARELTL FT GLEVVTAEGEIWNGLRGLRKDNTGYDLRDLYVGSEGTLGIITAATLKLFPLPVATCTAL FT LALDSIDAAVEVLSRARGGFGASLTGFELMAADCLQAVTRLFPQQRLPFDGASADSPWF FT ALLELSDSESEAHARARFEAVVGAAIEDGLVADAAIAENLAQSQALWHLRESIPLAEAE FT LGKSIKHDVSIPISAIAAFVHQTNGLLQGRFPGVRNVIFGHLGDGNLHYNVARGPGQTE FT ADLLGLQSQVYDAVHGSVQAFAGSISAEHGVGQLKRDELPRYKSAVELALMKRLKAALD FT PRGLLNPGKVLQA" FT misc_feature 860829..861320 FT /note="HMMPfam hit to PF01565, FAD binding domain, score FT 7.4e-64" FT misc_feature 861360..862124 FT /note="HMMPfam hit to PF02913, FAD linked oxidases, FT C-terminal domain, score 3.5e-72" FT misc_feature 861729..861752 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 862151..862861 FT /transl_table=11 FT /locus_tag="BPP0803" FT /product="putative two-component system response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3138" FT /protein_id="CAE40212.1" FT /translation="MTAAPANRHFRVLIVEDDLTIAANLYDYLQVRGFVPDAAYDGRSA FT LALLDEHAFDAMVLDVGLPGMDGHAVLHALRVERRAALPVLMLTARDGLDDKLAGFAHG FT ADDYLTKPFALAEVEARLLALIQRSRGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTR FT KCGMIVEVLLRDPGRVVSREQLENALWGDDPPSSDALRSQVHLLRRALADAGFDGIETV FT HGTGWRLALPAGGA" FT misc_feature 862178..862540 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 2.2e-29" FT misc_feature 862619..862828 FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal, score 8.8e-13" FT CDS 862858..864180 FT /transl_table=11 FT /locus_tag="BPP0804" FT /product="putative two-component system sensor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3137" FT /protein_id="CAE40213.1" FT /translation="MSARPVSGNGSGSLTQRVVWALTGSVALFVTALVLLSYLTFDKME FT DDLVNDILSTETDRLIQHVAADDHFLPDRGARELGGAMRAWLVRAGAAQSDLPQPLHGL FT GVGMHLLEPGAETWHVMVADVEDARIYVLYDATDNEARVHDFGLFVLGVGAICIVAAYG FT ISRRVAGVAVGPLVELTRRLANWAPGAPDLAVTRDDEAGRLIEAFNRVQNQVDRSIARE FT REFSVNVSHEVRTPLAAIRSDSEMMLLAAGLDEGLRTRLVRIVANVDNVSTALESARAM FT ARDEPRAPERVDLAACMDDAWRGLEVNAEAAGLAFANRIPAGSAHVLDRYAMLTVLRNL FT VRNAIEHAAPATLTAALRPDGALELRDDGRGIAAEELPFVFQRFYSGRLRDSADNGSNE FT LPRGLGLAIAKRVCDMQGWQLSVDSERDGPARGTRFVLRFT" FT misc_feature join(862909..862977,863293..863352) FT /note="2 probable transmembrane helices predicted for FT BPP0804 by TMHMM2.0 at aa 18-40 and 146-165" FT misc_feature 863305..863508 FT /note="HMMPfam hit to PF00672, HAMP domain, score 0.023" FT misc_feature 863518..863718 FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 0.0003" FT misc_feature 863839..864174 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 2.9e-19" FT CDS 864260..866221 FT /transl_table=11 FT /locus_tag="BPP0805" FT /product="putative sulfatase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3136" FT /protein_id="CAE40214.1" FT /translation="MRVFFCNEADEALALPPPTRNPVRRLTIRFAIAILVLLTLSRLGL FT SAWQWDRVQAAGGLGPIMLGGLRMDLRLLALVLALPAVLAPCFGHRAWAASATAWWYRV FT WWMLFVLLEVSTPQFIAEYDTRPNRLYFEYLVHPREVASMLWEGYKGVLLASFVVLVLA FT AWLAVRLFPTGRQDGFMKWWKRPFVTLAVLAVVVLAARGTLQHRPINASMVAFSSDAMV FT NTLPLNSLGNVLDAAYRLQDERSSAALYPPMKTEEMNRIVRAAAGLEDPPLDARYPSLH FT KQTATVRRDKPLNLVIILQESLGAQYVGSLGGRDLTPQLDRLAKDGWMFNRAYATGTRS FT VRGLEAVTAGFLPTVAEAVLKLPRSQTGFFTLADLLGRHGFHSRFIYGGEAHFDNMRGF FT FLGNGFNEVIDRQSFVDPVFVGSWGASDEDMFNQLDRLLRADDGKSTFTLAFSVSNHSP FT WEYPAGRIEPVGDPASVDNTVRYADWAMGQFFDKARKAPYWDNTVFLVIADHDSRVYGA FT NLVPVRHFQIPALILGGTVPPRSDDRIVSQIDMGPTLLSLIGLDNVNPMLGADLTQRDP FT NRAIMQYGDNFGYLKGDSLLVIEPGKDPREYRYTAAASMRDEKYIPIDIDPALRDEALA FT FALWPSWAYREERYKLPK" FT misc_feature join(864341..864409,864467..864535,864554..864622, FT 864710..864778,864815..864874) FT /note="5 probable transmembrane helices predicted for FT BPP0805 by TMHMM2.0 at aa 28-50, 70-92, 99-121, 151-173 and FT 186-205" FT misc_feature 865136..866209 FT /note="HMMPfam hit to PF00884, Sulfatase, score 4.3e-06" FT CDS complement(866410..867768) FT /transl_table=11 FT /gene="fahA" FT /gene_synonym="fah" FT /locus_tag="BPP0806" FT /product="fumarylacetoacetase" FT /EC_number="3.7.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3135" FT /protein_id="CAE40215.1" FT /translation="MRPGHFPIQKQRQAAMSKLNETHDPALQSWVASANAADTSFPIQN FT LPFAAFRRKGTQDPFRPGVAIGDAIVDLAALAAQAPFDGTAAAALAACQGERLNALMAL FT DQAHWSALRLALSRALRTGSALQGRIEPLLVAQAEAEYTTPAHIGDYTDFYISVHHATA FT VGKQFRPDNPLLPNYKWVPIGYHGRASSIGVDQRFARPVGQTRPAAEGEAPQFGPCQRL FT DYELELGIFVGRGNAQGERIALGEAESHVFGLCILNDWSARDIQAWEYQPLGPFLAKNF FT ASTISPWIVTLEALEPFRAAWTRDAADPQPLPYLESAENRAHGAFDVQMEVLISTEQSR FT AKHAQPALLSRSNFRDAYWNIAQLVAHHTVNGCNLQPGDMMGTGTLSGPQASEAGSLLE FT LTNGGKQPLDLPWGEQRTFLQDGDQIIMRAECSKPGYPRIGFGDCVGTVLAAK" FT misc_feature complement(866587..867258) FT /note="HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) FT hydrolase family, score 5.9e-55" FT CDS complement(867832..869130) FT /transl_table=11 FT /gene="hmgA" FT /locus_tag="BPP0807" FT /product="homogentisate 1,2-dioxygenase" FT /EC_number="1.13.11.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3134" FT /protein_id="CAE40216.1" FT /translation="MSLQYQTGFGNACATEALPGALPAGRNSPQICPYGLYAEQLSGTA FT FTAPRAENRRSWLYRIRPGVQHLPFAPFAGAQRWLSDFGRQPVTPNQLRWSPLPMPDAP FT TDFIDGMHTWGGNGGPEEQSGVGIHLYAANRSMQGRFFYNADGEMLIVPQQGRLRLATE FT LGLIDIEPYEIAVVPRGVRLRVELLDDVARGYMLENFGTAMRLPELGPIGSNCLANARD FT FQIPVAWYEDVEGDFELIAKFTGGFWRAPIAHSPLNVVAWHGTHAPYKYDLRNFNTVGS FT ISYDHPDPSIFTVLTSPSDTPGTANMDFAIFPPRILAMENTFRPPWFHRNIASEFMGLI FT HGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQAHYIRDTMAFMFETRRV FT IRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA" FT misc_feature 869180..869186 FT /note="Duplication due to IS1001 insertion" FT repeat_region 869187..869199 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT repeat_region 869187..870493 FT CDS 869270..870490 FT /transl_table=11 FT /locus_tag="BPP0808" FT /product="transposase" FT /note="transposase for IS1001 element" FT /protein_id="CAE40217.1" FT /translation="MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCE FT QCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVT FT DRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFA FT LHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYEL FT EIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNR FT DNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGI FT AALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRA FT AFPGNAR" FT misc_feature 869360..870349 FT /note="HMMPfam hit to PF01610, Transposase, score 7.9e-128" FT repeat_region complement(870481..870493) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT misc_feature 870494..870501 FT /note="Duplication due to IS1001 insertion" FT CDS join(870627..870713,870717..871535) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0809" FT /product="putative LysR-family transcriptional regulator FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3133" FT /db_xref="PSEUDO:CAE40218.1" FT variation 870714..870716 FT /note="In-frame TAG stop codon in B. parapertussis; CAG in FT pertussis and bronchiseptica" FT misc_feature 870903..871523 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.4e-17" FT CDS complement(871545..871754) FT /transl_table=11 FT /locus_tag="BPP0810" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3132" FT /protein_id="CAE40219.1" FT /translation="MPLITTPNLAGPDNFYEALIDTHRDLSDEQSRELNAALILLLANH FT IGDMAVLRAALEHARQSVVAPPAP" FT CDS complement(871766..873445) FT /transl_table=11 FT /locus_tag="BPP0811" FT /product="putative oxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3131" FT /protein_id="CAE40220.1" FT /translation="MGDIDYQAIEFAYTKCADQQRDTPARHCVIVVGAGPVGLTTALDL FT ARQGLRVVVLDDDYRLSTGSRAICFAKRTLEIWDRLGVGQRMVDKGVSWNVGKVFFRDQ FT EVWRFDLLPEPGHRRPAFINLQQYYAEGYLHELASAQPGIELRWKSKVVGVAQQADGVQ FT VTVDTPDGAYALHVDWLVACDGARSPVRKLLDLETHGRVFKDRFLIADVKMAADYPAER FT WFWFDPPFHPNQSVLLHMQPDNVWRIDFQLGWNADPVEAVKPENVLPRIRALLGPDADF FT ELEWVSVYTFACERMDHFRHGRVVFAGDSAHRVSPFGARGANSGVQDAENLAWKLKLVL FT AGHAPESLIDSYAAEREYAADENILNSSRSTDFITPKSEVSRTFRNAVLNLARQHPFAR FT TLVNSGRLSVPAAYADSPLNTPDSDPYAGTMRPGAVALDAPVRADAQPGWWLSQLDGGF FT ALALFCGAETPRADMLDALRALQQDEVPVQPILVCDAGAAPAAAPAGVRVVEDSEGWLA FT RRYDARPGTCYLIRPDQHIAARFRAFDAQAVRRALARAIGRA" FT misc_feature complement(872342..872920) FT /note="HMMPfam hit to PF01360, Monooxygenase, score FT 2.3e-35" FT misc_feature complement(872942..873361) FT /note="HMMPfam hit to PF01494, FAD binding domain, score FT 7.5e-11" FT CDS complement(873547..874566) FT /transl_table=11 FT /locus_tag="BPP0812" FT /product="putative cyclase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3130" FT /protein_id="CAE40221.1" FT /translation="MHKNKRRAIFPSTHSYKWKEPTVSKQFASHADLEDKVVSFEKLSD FT NAYAYTAEGDPNTGIIVGDDAVMVVDTQATPVMAQDVIRRVREVTDKPIKYILLSHYHA FT VRVFGASAYGAQEILASRDTYDLIAERGEQDKASEIGRFPRLFRNVESIPPGLVWPTMT FT FKGEMTVDLGNLEVKLLQVGRGHTKGDTIAWLPEQKILFAGDLVEYQSTPYCGDCYFRE FT WPATLDALAGFEAEKMVPGRGPALKSATEVRQGLAGTRAFLTDLYAAVNRGVADGKDLK FT TIYREVYDFMKPRYSQWVIFDHCMPFNVSRAYDEATGHYDPRIWTDKRDIEMWQQLES" FT misc_feature complement(873841..874416) FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily, score 5.5e-11" FT CDS complement(874590..875417) FT /transl_table=11 FT /gene="mutM" FT /gene_synonym="fpg" FT /locus_tag="BPP0813" FT /product="formamidopyrimidine-DNA glycosylase" FT /EC_number="3.2.2.23" FT /note="ortholog of Bordetella pertussis (BX470248) BP3129" FT /protein_id="CAE40222.1" FT /translation="MPELPEVETTRRGIDTVITGRTLRRLVVREARMRWPIPPALPDLL FT AGRTVLECGRRGKYLLLRFDHGVQIVHLGMSGSLRRVPEQEAPRKHGHVDWVFDHAVLR FT LHDPRRFGAVLWHPDEAGPIAAHPLLARLGIEPFDPRFDGRWLHAYFRGRRVAIKQALL FT AGDAVVGVGNIYASESLFRAGIDPRTAAQRVSAARCDRLAAAIRATLSDALDSGGSTLR FT DYVGASGEPGAYFAIHAAVYERAGLPCRVCGAPIRRLVQGQRATYFCPSCQKR" FT misc_feature complement(874599..874673) FT /note="PS01242 Formamidopyrimidine-DNA glycosylase FT signature." FT misc_feature complement(874599..875417) FT /note="HMMPfam hit to PF01149, Formamidopyrimidine-DNA FT glycosylase, score 6.8e-102" FT CDS 875416..877296 FT /transl_table=11 FT /locus_tag="BPP0814" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3128" FT /protein_id="CAE40223.1" FT /translation="MSQCKIINCVYEDCAINRTGRVKLSLKHINFGVAALALAGLQSLP FT AQAAEVRPRDATGPRLIQPSKQPETEVIRLRPGQLPYVSLTADIFYRIVGAELAAQRGM FT YGTAAATLVTLARETGDPRLARRGLEFQLAGGNLPGALDAARAWSSLAPNDIEASSTEL FT ALAAANGETSGLATALRKRIDTARDKPAAIVQAMGVLSRLNDRRLALRILDESLSDSAR FT KLPAAHLALADVAQAAGDYPRAANEAYAALAADPKSEAAAQRVLEYGAKVDATRAQHQA FT RAFINRNPDARKLRLMLAGQIADGGDYDGALAELQAMARRSPEDFDLMFMQAQLAYKAG FT RLDQARGYLQQYLDVQNQRQMATAPGATDAGAAAADAHVLLSRIAEDQGRYDEAIRELG FT RIDDPAMRYSAHMRQATLRARQGRIDDALAMVDRADPQDDEERTLGVLTKAQILRDADQ FT VDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNAL FT GYTLADRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALR FT PEADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNRALLDTMRRLEVRP" FT misc_feature 875416..875559 FT /note="Signal peptide predicted for BPP0814 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.992 between residues 48 and 49" FT misc_feature 875923..875946 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT misc_feature 876088..876189 FT /note="HMMPfam hit to PF00515, TPR Domain, score 10" FT misc_feature 876391..876492 FT /note="HMMPfam hit to PF00515, TPR Domain, score 25" FT misc_feature 876844..876945 FT /note="HMMPfam hit to PF00515, TPR Domain, score 0.7" FT misc_feature 876946..877050 FT /note="HMMPfam hit to PF00515, TPR Domain, score 1.6" FT misc_feature 877051..877152 FT /note="HMMPfam hit to PF00515, TPR Domain, score 0.32" FT CDS 877293..877892 FT /transl_table=11 FT /locus_tag="BPP0815" FT /product="putative outer membrane lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3127" FT /protein_id="CAE40224.1" FT /translation="MSVCPAPRSPVRWLHAFTLCLLLAVLAGCVSVPKPMAGAGEDVFS FT RVGRFAITVTESDGKQQAVQGGFAWRDDGGSYLLDLTNPLGSTEARVEGRPGMAVLTRA FT NGERLAAEHPDALAEDALGSPVPVTGLRDWLRGRLMAGAAPDGLERDAQGRPTAFEQDG FT WNARLSRYDAQGPQLLVLQRQEPGRRILVRLVITQP" FT misc_feature 877293..877403 FT /note="Signal peptide predicted for BPP0815 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.649) with cleavage site FT probability 0.427 between residues 37 and 38" FT misc_feature 877329..877388 FT /note="1 probable transmembrane helix predicted for BPP0815 FT by TMHMM2.0 at aa 13-32" FT misc_feature 877332..877847 FT /note="HMMPfam hit to PF03550, Outer membrane lipoprotein FT LolB, score 9.3e-09" FT misc_feature 877347..877379 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 877941..878840 FT /transl_table=11 FT /gene="ispE" FT /gene_synonym="ipk" FT /locus_tag="BPP0816" FT /product="4-diphosphocytidyl-2-C-methyl-D-erythritol FT kinase" FT /EC_number="2.7.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3126" FT /protein_id="CAE40225.1" FT /translation="MTLYDVPAPAKLNLFLHVVGRRADGYHLLQTAFRFIDLADTLHFE FT ARADGAIGRAYELPGVAESDDLVVRAARSLQRATGTRQGAQIGLHKRIPQGGGLGGGSS FT DAATTLIALNRLWGTGLSRSQLMQLALPLGADVPVFVFGQSAFAQGVGEDLTAVALPPA FT AYLVVQPDAGVPTAAIFSDPDLTRDCASVTIADFLALLTSCFGRNDLEPVVLRRYPEVS FT GAVRWLFEHGLRVRMSGSGACLFAEFPTLPEAVLAQEEITATMRVAGKTTSHTHPGFRL FT VQASTGLTEHPLRNWIAS" FT misc_feature 877947..878786 FT /note="HMMPfam hit to PF00288, GHMP kinases putative FT ATP-binding protein, score 1.9e-21" FT tRNA 878842..878918 FT /note="tRNA Gln anticodon TTG, Cove score 77.70" FT CDS 879067..879999 FT /transl_table=11 FT /gene="prsA" FT /gene_synonym="prs" FT /locus_tag="BPP0817" FT /product="ribose-phosphate pyrophosphokinase" FT /EC_number="2.7.6.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3125" FT /protein_id="CAE40226.1" FT /translation="MIFTGTANTRLAVDVVNHLDMSLGKMTVGRFSDGEVMVEINENVR FT GKDVFVLQPTCAPTNDNLMEIMVMVDALRRASAGRITAAIPYFGYARQDRRPRSARVAI FT SAKVVANMLQVAGVDRVLTMDLHADQIQGFFDIPVDNIYAGPILLGDIWRRNFSNLVVV FT SPDIGGVVRARALAKQLEADLAIIDKRRPRANVSEVMNIIGEVDGRTCIIMDDMVDTAG FT TLCKAAQALKDRGAGAVYAYCTHPVLSGGAIERIETSSLDELVVTDTIPLSEQGQACGK FT IRQLSCAALLGETILRISNAESVSSLFAD" FT misc_feature 879409..879438 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT misc_feature 879439..879486 FT /note="PS00114 Phosphoribosyl pyrophosphate synthetase FT signature." FT misc_feature 879460..879870 FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain, score 2.9e-36" FT misc_feature 879697..879735 FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT CDS 880122..880736 FT /transl_table=11 FT /gene="rplY" FT /locus_tag="BPP0818" FT /product="50S ribosomal protein L25" FT /note="ortholog of Bordetella pertussis (BX470248) BP3124" FT /protein_id="CAE40227.1" FT /translation="MKFNATARSVQGSSASRRLRRAGRVPAIVYGGTAAPLNIELDHNE FT IYHALRKEEFHASILNMVIEGGKTEEVLLRSVQWHAYKPQVMHVDFQRVDANQALHTKV FT PLHFINAEVSPAVKLSGAIISHVLTELDITCLPALLPQFIEVNLGDLLGGGSIHLADIK FT LPKGVTFNAHGGDTNPLIAAAVVKGGGAADEGDAAAEQPAA" FT misc_feature 880128..880394 FT /note="HMMPfam hit to PF01386, Ribosomal L25p family, score FT 2.4e-27" FT misc_feature 880575..880607 FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT CDS 880814..881461 FT /transl_table=11 FT /gene="pth" FT /locus_tag="BPP0819" FT /product="peptidyl-tRNA hydrolase" FT /EC_number="3.1.1.29" FT /note="ortholog of Bordetella pertussis (BX470248) BP3123" FT /protein_id="CAE40228.1" FT /translation="MRRVLYFTNTRPDAYATMSDPIRLIVGLGNPGPDYETTRHNAGFW FT LADHLADDLRTAFALEKGFFGMLAKARHAGENVVLLKPITYMNRSGQSVGAVARFYKLA FT PEQVLVLHDELDLLPGQVKIKQGGGHAGHNGLKDIQAALGSPNFWRLRIGIGHPRSLGL FT AQQVADFVLHPPRREEQQQIDTVIDRCRAVVPAMLAGDFALATRELHGANGA" FT misc_feature 880874..881443 FT /note="HMMPfam hit to PF01195, Peptidyl-tRNA hydrolase, FT score 6.1e-71" FT misc_feature 880916..880957 FT /note="PS01195 Peptidyl-tRNA hydrolase signature 1." FT misc_feature 881198..881230 FT /note="PS01196 Peptidyl-tRNA hydrolase signature 2." FT CDS 881458..882240 FT /transl_table=11 FT /locus_tag="BPP0820" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3122" FT /protein_id="CAE40229.1" FT /translation="MSDVTTARQGAARATTFRQDLADCWRFLRRPTLSGRLPGRRADSG FT WASDWRPGVGASRLLAWAAVLWALNLFALGPIAVTVAGAGGAMHRLDLANIPWLTAILW FT APLVEELLFRYGLRRPAQALWFCPMVLPAILWGAQGWTLALVAVAVWLAWLSLRRGRAS FT LAGWDTSWRRYYSYRFGLVFHLVALTFAAVHLNNFSLSQTPIWLLPLLVLPQWATGLVL FT GWMRVRRGIGAAIALHALFNGGSVLMIWLLMTLMPAGA" FT misc_feature join(881632..881700,881854..881922,881983..882042, FT 882070..882129,882148..882216) FT /note="5 probable transmembrane helices predicted for FT BPP0820 by TMHMM2.0 at aa 59-81, 133-155, 176-195, 205-224 FT and 231-253" FT misc_feature 881743..882204 FT /note="HMMPfam hit to PF02517, CAAX amino terminal protease FT family, score 0.02" FT CDS 882313..883404 FT /transl_table=11 FT /locus_tag="BPP0821" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3121" FT /protein_id="CAE40230.1" FT /translation="MALQCGIVGLPNVGKSTLFNALTGAGIAAENYPFCTIEPNVGVVE FT VPDPRLDKLAEIVKPERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETNAIVNVV FT RCFEDPNVVHVAGKVDPIADIEVIETELALADLQTAEKALHRHSKTARSGDKDAQRLVT FT VLEKCIAQLNQAKPVRGLDLSDEEQALIAQLCFITAKPAMYVGNVSDDGFTDNPLLERL FT AEFAKSRNAPMVAICAAIESEIVDLPEEDRQAFLSDMGMEEPGLNRLIRGAFTLLGLQT FT YFTAGVKEVRAWTIPIGATASQAAGVIHTDFERGFIRAQTIAYEDFIACKGEQGAKEAG FT KMRAEGKEYVVKDGDVMNFLFNV" FT misc_feature 882313..882339 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 882337..882360 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(883503..887405) FT /transl_table=11 FT /locus_tag="BPP0822" FT /product="autotransporter" FT /note="Similar to Serratia marcescens extracellular serine FT protease precursor SWALL:PRTS_SERMA (SWALL:P09489) (1045 FT aa) fasta scores: E(): 1.4e-26, 32.9% id in 626 aa, and to FT Rhizobium loti serine proteinase Mlr1935 SWALL:Q98JH8 FT (EMBL:AP002998) (1213 aa) fasta scores: E(): 5.2e-81, FT 33.51% id in 1262 aa" FT /protein_id="CAE40231.1" FT /translation="MEISNAPGTLDSPYVWATPDDNVTGQLIFNHSAGDYEFAPAILQN FT VAVVHAGVGATTLVGGNTYTGGTTLDAGVLGISANANLGNPNGALVFNGGTLRTTGFIT FT MNRATALGAGNGAFDVASGASLTQQGIVSGSGALTKTGPGSLTLSGVNTYAGGTVIEAG FT TLRIAQSGNLGTGPLTLNGGTLEATAPLTLYADTWIDGSGTISTTSSLTLEGSINGRAG FT VKISSGPTGTVILNGAHNALPTAFVTGQSTLQVNGTLEAIIDIGGASRLSGSGTVGNTS FT IQHGSTLSPGQSSIGTLTVNGDLTLHDGSILDYQLGGPGTSSDPASGIGSRVNVTGNLT FT LNGALNLRSSSDTAQDGVPGLGYYRLMTYGGTLSGTGLSIGSTPVFSDPAHFEIQAGGG FT NVDLFIAALGHDTLQHWQGGDGAWNSANAQWLNRNGEVAAGWAGNQAVFKNQPGGFGGG FT TITVAGMQQFKGLQFVDDGYRLEGSGQLVIDGSERGDGNAEIRVLANSAEISTEITGSG FT GITKTDAGTLVLSGNNSYQGSTHILGGAVSIASDRNLGATGAGILLSGGTLATTADMAI FT GRNITLAGNGGFDVAAGTTLAATGPIGGTGALVKTGTGTLRLAGANLYAGGTRVRQGVL FT IGDTASIRGNIANDGEVAFQQATGGVFAGDISGSGLMRKLGAGSLALAGRNAQDWAVDT FT GPLRSAGSRFAGDVAIGANGIFVLDDAQAAAYAGALSGTGRFHKQGAGSLLLTGDSASF FT TGHATVSAGTLRVGDRHGGGVLGGSLDVQAGATLGGSGTVGSGAGSQVTVASGGTLAPG FT NSVGTLTVNGDLVLDKGSRFEVEVDPQGTRSDQVAVTGNTTIQGGAVAHVGATGQYQLR FT STYTLLTTGGALSGRFDTVSSDFAFLTPELRYDYGAGTVGLALARNDRSFASMALTDNQ FT YATAQGIDSIGVAAGHAVYDAVAQLPDDAPLVRASLDALSGEIHASAKTALIEDSRFVR FT DAAKDRVRAAFAAPGASTAAVSARAADGAPTAVAATHDGPAAWSQAFGSWGSTDSDGNA FT ARLERNVGGVLIGADRLMGNWRVGALAGYSQTDAKARDRASSGRSDNYHLGLYGGTQSG FT ALGVRTGLAYSWHDIRTRRSVDIPGLSDSLRADYGGGTFQAFGELGYGIELNDTTRLEP FT FASLAYVRLHTDGYRESGGAAALTTGSANTETTFSTLGLRAEHALGSGAAQGTVRATAG FT WRHAMGDTTPQARHAFSAGDAFTVAGAPIAQDSAVIELGVDLAVARNTRFGLSYAGQIA FT GSAQDHGVRADLSIRF" FT misc_feature complement(883509..884582) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02385, , score 0.0016" FT CDS 888296..889867 FT /transl_table=11 FT /locus_tag="BPP0823" FT /product="putative regulatory protein" FT /note="Its internal region is similar to many FT transcriptional regulators such as Rhizobium meliloti FT putative response regulator protein Rb0212 or Smb20219 FT SWALL:Q92WW5 (EMBL:AL603642) (245 aa) fasta scores: E(): FT 2.1e-05, 33.01% id in 103 aa, and to Rhodobacter FT sphaeroides DmsR SWALL:O32479 (EMBL:D89075) (232 aa) fasta FT scores: E(): 0.00018, 32% id in 100 aa" FT /protein_id="CAE40232.1" FT /translation="MSIPSVRYADLVFQPDLRAATRDDGAKLSLTRQERALILQLTERP FT HQLITRQQLLEGLGDLAGELSERNIDYLVNRLRKRLGDNARTPRFIATQYGEGYIWVAD FT PIAVAPVSAFLLIGPVYGLGENEQAAAVVKRLGGHIGQALHGSRKVLCLPQWRFEPETA FT SHIAHSLEISLWPEDGQLHMALVLKDGRSNTPIRPFRLTVPLAGENAELAAFAQSLADA FT IWAHAALPGGEPPNPTDRPLLLRLHDAAVLVTGDIESWRHNAQRLRAAQADNPDDPALA FT VLLALNRYTELIQGPLSPDTPPLTDVQWRGIEDDIEQLALGALAKARSEPMLLLGIAKV FT LCFIDRGYLKLAATLTEEAFEASTAFAAAFTMKALTLACQGEIDRAVDLYDRAIELAET FT GSQFHIYLLILKGSALLAADRRGEVAQMVAELSALDPASRGWVGLIFLSPKSKRTPPAL FT AMIPKEAGRRMLTYLHRTTARQFERRHHQKNVLHGLAIHLARVHGADVIPSPLREYFPK FT RFADAS" FT misc_feature 888371..888589 FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal, score 1.5e-09" FT misc_feature 889394..889495 FT /note="HMMPfam hit to PF00515, TPR Domain, score 0.027" FT CDS complement(889918..890922) FT /transl_table=11 FT /locus_tag="BPP0824" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 4.2e-28, 34.41% id in 340 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 ra1058 or sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 6.8e-26, 33.53% FT id in 331 aa" FT /protein_id="CAE40233.1" FT /translation="MYRRILAAAAAAISALLPLHASADSYPSKPISLVVGFAAGGGSDV FT LTRAFAKYLNAEIGVPIVVENRPGADSLLASQAIKNAKPDGYTIYLATSTHAVNPSLFS FT EAKFKVRDDVTPISMIGEAPVAIAIAPMLPTRTLQEFIDYAKAHGGQLNYGTSASNTYL FT ETAYMLRAAGLDMQRIPYKGAAPASVALMSGEIQLLLSTVGHLAPLVQSGKVRALAVTS FT AGRSTLMPDLPTTREAGMPDFMPNLSTANDAGLPNVTSSIWYALLAPPGVPADVVKRLN FT QSTQAVLRNPEFMSQMVTMGVELRPSSPEGLGQFLEAEEAKWQKIVDDIGARQ" FT misc_feature complement(889927..890787) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 4.6e-62" FT misc_feature complement(890854..890922) FT /note="Signal peptide predicted for BPP0824 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.955 between residues 23 and 24" FT CDS complement(891295..892035) FT /transl_table=11 FT /locus_tag="BPP0825" FT /product="putative TetR-family transcriptional regulator" FT /note="Similar to Bacillus halodurans transcriptional FT regulator Bh3797 SWALL:Q9K6D2 (EMBL:AP001520) (202 aa) FT fasta scores: E(): 7.8e-19, 31.63% id in 196 aa, and to FT Streptomyces coelicolor putative TetR-family FT transcriptional regulator Sco5170 or Scp8.33C SWALL:Q9FBI8 FT (EMBL:AL390975) (213 aa) fasta scores: E(): 3.5e-06, 36.92% FT id in 130 aa" FT /protein_id="CAE40234.1" FT /translation="MPHSVDDSSLVTRRRAQLVKAAIKLFSRMGYHAATVKDIAQEAGV FT SAGLMYQYVPDKQDLLFLALQHIVQRNKEEVPSALLGVEDPIARLYRAIDAYTRVMAAN FT QQAVLLTYRETKSLKPEYIEQMKQLELDTNRLIEACATDCIRAGYLAPTNVELLVYRII FT IAAHAWPLKHWRLRRIVTLDEYLDQAIHAAWKDLLLPRGSSRYEELRRAGELRPVHLAG FT ESDDGASRAAGTEPKKRARRGRAA" FT misc_feature complement(891844..891984) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 7.9e-14" FT misc_feature complement(891856..891948) FT /note="PS01081 Bacterial regulatory proteins, tetR family FT signature." FT CDS complement(892262..893209) FT /transl_table=11 FT /locus_tag="BPP0826" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE40235.1" FT /translation="MQMDLSKIQFGVDVATSLAILASAITFLINQRLKTRETKRRQLDE FT SVRAVTVDEFQSALGNLSTAYVKEIVRHTVPLQASVSRGLERLEKSLELDPKRANVLMD FT AMANTTQAISDYINAICAYNYQIYPLLDSIEGGESQIQEFRRNLQRLMDSYNNIGRGHE FT SLFKEVRALCDFCAAHPLEQADHEALQRMAMSIVADKDYRQWVDSFVPSGKEEAYWTCV FT DKGDFEGEKDLLMRVVSNVIGGFYKAPARMQAQVIYLAYSAIIDARQQCKEFLVGMAAI FT NYWLIRKGGGSESLPDVIQRYRSQAVFAVDSEIR" FT misc_feature complement(893123..893179) FT /note="1 probable transmembrane helix predicted for BPP0826 FT by TMHMM2.0 at aa 10-29" FT CDS 893426..894601 FT /transl_table=11 FT /locus_tag="BPP0827" FT /product="putative membrane protein" FT /note="Similar to Ralstonia solanacearum putative drug FT transport transmembrane protein Rsc2316 or Rs01233 FT SWALL:Q8XX02 (EMBL:AL646069) (399 aa) fasta scores: E(): FT 3.4e-43, 39.17% id in 388 aa, and to Rhizobium loti FT hypothetical protein Mlr8412 mlr8412 SWALL:Q983A8 FT (EMBL:AP003014) (405 aa) fasta scores: E(): 1.6e-41, 36.73% FT id in 392 aa" FT /protein_id="CAE40236.1" FT /translation="MNRNLWLLSVLQGLFLTNNVTFIAINGLVGFALAPYGWMATLPVM FT GYVVGGALCTGPVAWTQKRYGRKGSFMLGLLVAAGSALLCAFAAYIGNFWLLCAATAIA FT GYYSANGQLYRFASAELAAPGAREKAVSLVMAGGLLGAVVGPNLASFTKELFVTPFLGA FT YLALAVVALLAMAVLARIEFPEVAQRASANGGRPLSVIARQPAFIVATGAGALGYGVMN FT LLMAATPLAMQHHGLPFADAAFVLEWHVIGMFAPGFFTGHLIKRFGVLPIMGWGAALNL FT VCIGVALSGVELHHFTVSLFLLGVGWNFLFTGSTTLSLSTYTAEEKDRAQAAMNFCVFA FT VMAVTSLTSGMLVTTRGWTVLNVGSLVPMLMICVGLAWLAWRKAPSRAAVG" FT misc_feature join(893444..893512,893525..893593,893630..893698, FT 893708..893776,893813..893881,893909..893977, FT 894038..894106,894134..894202,894221..894289, FT 894317..894385,894419..894487,894497..894565) FT /note="12 probable transmembrane helices predicted for FT BPP0827 by TMHMM2.0 at aa 7-29, 34-56, 69-91, 95-117, FT 130-152, 162-184, 205-227, 237-259, 266-288, 298-320, FT 332-354 and 358-380" FT CDS complement(894648..895433) FT /transl_table=11 FT /locus_tag="BPP0828" FT /product="GntR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3452" FT /protein_id="CAE40237.1" FT /translation="MRHPRMGAGYTIRSPSWPFLPDRTSMTRQPQSADIEELPLGRTSK FT SLPEQVADRLMQSIQTGVLQPGERLKEETLSDRFAVSRTTVREAISTLERRGVIERVPR FT FGARVRDIRADEIEEIFCIRAQLLGLAARRVAEHGDDEILAQLRQQVERLRQLADKPST FT SPASYAKVSIETQQLLIQAVGWKQLGTMYEGLSNQMLWKTSVRGKSLSFQSQQRRRESV FT GDWQRLLEAVCTRDAAAAEESAKLLLGASYRAVRGQLAS" FT misc_feature complement(895107..895283) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 4.8e-16" FT misc_feature complement(895155..895229) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(895430..897127) FT /transl_table=11 FT /locus_tag="BPP0829" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3453" FT /protein_id="CAE40238.1" FT /translation="MPIIARLPIQKIMNPTLAARTGGRILVDALKVHGVGQAFCVPGES FT YLPVLDALRDDAQAIRLTVCRQEGGAAFMAEAYGKLTGKPGICFVTRGPGATNASIGVH FT TAFQDSTPMILFVGQVGADVAEREAFQEIDYRRMYGQMAKWVASIDDAQRIPEFVHRAH FT QVALSGRPGPVVLALPEDVLRATAHAADRVPHRIARACATSADMKRLHELLAAARRPLL FT IVGGGGWNEAASAAITRYAERAGLPVATAFRRQDRFDNRHPCYAGHIGLGIAPSLARHV FT RQADLLLVVGARLADATTDSYALITPEHPGQTLIHVHHDPQELGRVYPADLPIATDVQA FT FAAQLDACDNPPARCDAWLRELADDYRTDLAVAPSRRDTDLAQVMHWLNQHLPQNAIVT FT NGAGNYAGWVHRYFQYSPQRRQLAPTNGAMGYGVPAAIAAKLAAPARTVVCFAGDGCFM FT MNGQELATAIQHDAAVVFIVVNNGMFGTIRMHQEMHYPGRVSGTSLRNPDFVALASAYG FT AHAERVAHHDDFPAAFERACASGRAALIEIRTDPAAISARRDLPTLAA" FT misc_feature complement(895487..896008) FT /note="HMMPfam hit to PF02775, Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 2.8e-51" FT misc_feature complement(895760..895819) FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT misc_feature complement(896042..896521) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain, score 8.3e-16" FT misc_feature complement(896555..897076) FT /note="HMMPfam hit to PF02776, Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 2.8e-44" FT CDS complement(897145..898110) FT /transl_table=11 FT /locus_tag="BPP0830" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3454" FT /protein_id="CAE40239.1" FT /translation="MQRIFEKAALALALVAMPLWAGVACAQQPLRMMVGFPPGGTTDVI FT ARLVAQRLGGELSRSVVVENRAGASGNLAAATVAKADPDGSTLLFAPSSHATNASLYTN FT QSFDTVKSFRAVGMVAVTPYVLVVNPGMQATNLRDFVDYLKRNPGKVEFASASPGTGQH FT LAAELFKDEAGVDIMHVPYKGSAAALPDLIAGRVPMMFDNIAVMLPHIQQGTVRPLAIT FT SKTRSRFLPDTPTMAESGYPDFEVLGWFTLLAPAKTPDATVQAYNDALKKISADPDFVA FT QLAKLGGEAVARTPAQADAYIAEEVDKWGKVIRTAHINLN" FT misc_feature complement(897157..897978) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.2e-107" FT misc_feature complement(898033..898110) FT /note="Signal peptide predicted for BPP0830 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.798 between residues 26 and 27" FT misc_feature complement(898036..898068) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(898165..898947) FT /transl_table=11 FT /locus_tag="BPP0831" FT /product="putative taurine dioxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3455" FT /protein_id="CAE40240.1" FT /translation="MLVFPGQDLNAPQLIDFTRHFGDVERNDSVPYYRDPDYPEVLLVT FT NKPRDGKPLQTRNTGRNWHSDLSYTDRPAKGSVLMCKEKPPVGGDTMFANMYQAYESLS FT APFKRFVDGLHAVHDISLIKGFDRRDPEQTAALKRRNPPIAHPVVRIHPETGRKCLFVS FT DRVRTFVGMTEEESRPILDFLNRHATSPEFVYRHRWSVNDIVMWDNRCTLHIALPDFDQ FT SKPRHMMRCSMLGEPSGYVIEDAPLDEQAARSAIAAVS" FT misc_feature complement(898219..898947) FT /note="HMMPfam hit to PF02668, Taurine catabolism FT dioxygenase TauD, TfdA family, score 2.4e-31" FT CDS complement(899380..901668) FT /transl_table=11 FT /gene="maeB" FT /locus_tag="BPP0832" FT /product="NADP-dependent malic enzyme" FT /EC_number="1.1.1.40" FT /note="ortholog of Bordetella pertussis (BX470248) BP3456" FT /protein_id="CAE40241.1" FT /translation="MKDTDRQAALDYHAYPHPGKISVTATKPLVTQRDLSLAYSPGVAA FT ACEEIVEDPANVFRYTGRGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGL FT DVFDIEINETDPDKLVEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQ FT HGTAITVCAAVVNGLAVAGKRIEDVKLVTSGAGAAALACLDLLVDLGLPLEHIWVTDIE FT GAVYQGRTALMDPDKARYAQPTEARTLAEVIEGADVFLGLSAGNVLKPEMVATMAANPL FT ILALANPNPEILPEAAHAVRDDIIMATGRSDYPNQVNNVLCFPYIFRGALDVGATTITR FT EMEKAAVLAIASLAREEQNEVVAAAYGTYDISFGRDYLIPKPFDPRLIVRIAPAVAKAA FT MEGGVATRPIADLDAYAEQLQQFVYHSGAFMKPLFSQAKQIVRDGGRARIVFTEGEDER FT VLRAVQVIVDEKVAKPILVGRPQVLLSRIEKFGLRLRLGQDVEVCNPEYDERFHQYWTT FT YWELMCRNGITKEMARVEMRRRLTLIGAMMVHLGDADGMICGAVSGFHDHLRFIDQVIG FT RKPGATTYAAMNILLLDERTVALVDTHVNEDPSAEQIAEYTVAAAEEMQRLGLAPKVAL FT LSRSNFGSGSSASGAKMRHALELVNRQAPGLEIDGEMHGDCALDESLRLRLLPDSPLKG FT SANLLVCPNVDSGNIAYNLLKTVAGKNVAVGPILLGANAPVHIVTSSATVRRIINMAAL FT CVLDANRPQ" FT misc_feature complement(899404..900387) FT /note="HMMPfam hit to PF01515, Phosphate acetyl/butaryl FT transferase, score 1e-105" FT misc_feature complement(900442..901557) FT /note="HMMPfam hit to PF00390, Malic enzyme, score FT 2.1e-194" FT CDS 901786..902781 FT /transl_table=11 FT /locus_tag="BPP0833" FT /product="LysR family regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3457" FT /protein_id="CAE40242.1" FT /translation="MILLRSVPMTGSPSVDAAEIVRRLTSRLKMRHLQLLLHVRQLGSL FT TRVAQQLSTSQPAVTNALAELEDMFGAPLFQRTARGMTPTPLGLVVLARAEAIIHDLRH FT LVDDMGASASGYTARLHLGVTPFVSSRLIAAAIGRAQRADHRLAASVHDGISGKLLAGL FT RDHSLDVVVARAGPALDVEGIVFEPLYVQQPRLIASRRLAARLARRALDWSALAELDWI FT LGVPQTAMRDQVASLFMQAGIRPPATTTECHSAKLIGELIAASDRALSIVPADIADELV FT SVAGVAIVPFSFTWHLPPIAVFMRHESQGSAPHRLFAEALREECRHARAG" FT misc_feature 901873..902052 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.9e-20" FT misc_feature 901915..902007 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 902122..902763 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.2e-19" FT CDS 903034..903975 FT /transl_table=11 FT /locus_tag="BPP0834" FT /product="binding-protein-dependent transport systems inner FT membrane component" FT /note="ortholog of Bordetella pertussis (BX470248) BP3458" FT /protein_id="CAE40243.1" FT /translation="MLSYTLRRLLMTLPVMLFVALFVFGLLDLAPGDPAALLAGEDATP FT QDIARIRATLGLDQPFLQRFAEWGWNVLHGDLGTSLFTGLPVSHMIGQRLVPTFSLMLM FT TLLVSVVIAIPIGALAAWKHNRLQDRGIMVLAVFSFSVPSFAVGYLLAWIFGLQLRWFP FT VQGYVPLATGFWASVHTLVLPALALGSVYVALITRITRATLLETLSQDYIRTARAKGVG FT NRGLLFRHALKNAAVPIITVIGSGVALLISGTVVTETVFSIPGLGRLVVDAILRRDYPV FT IQGVILLFSFMYVLVNLLVDLLYRAFDPRIKY" FT misc_feature 903034..903150 FT /note="Signal peptide predicted for BPP0834 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.977) with cleavage site FT probability 0.590 between residues 39 and 40" FT misc_feature join(903058..903126,903328..903396,903433..903501, FT 903544..903612,903748..903816,903874..903942) FT /note="6 probable transmembrane helices predicted for FT BPP0834 by TMHMM2.0 at aa 9-31, 99-121, 134-156, 171-193, FT 239-261 and 281-303" FT misc_feature 903643..903858 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 1.2e-06" FT misc_feature 903646..903732 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 903975..904808 FT /transl_table=11 FT /locus_tag="BPP0835" FT /product="binding-protein-dependent transport systems inner FT membrane component" FT /note="ortholog of Bordetella pertussis (BX470248) BP3459" FT /protein_id="CAE40244.1" FT /translation="MSNIAGFLKRHPTTAVGGGLLLLLFLMAVCAPWLGTVDPTALSPI FT HRTRAPSEQFWFGTDLLGRDVYSRVIYGARVSLIVGFTVAALSTVIGVVIGLAAGFVRW FT VDAVVMRIMDGFMSIPTILLAIALIALTRASLQNVIIAITIAEVPRVVRLVRGLVLSLR FT EQPYVEAAVAAGASRLRIVARHIFPNTLAALMVQATYICGVAILAEASLSFIGAGVPPS FT VPSWGNIMAEGRALWQIKPHLIAFPAVFLSITILAINMLGDGLRDAVDPRMAKRI" FT misc_feature 903975..904067 FT /note="Signal peptide predicted for BPP0835 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.747) with cleavage site FT probability 0.319 between residues 31 and 32" FT misc_feature join(904017..904085,904203..904271,904299..904367, FT 904530..904598,904701..904769) FT /note="5 probable transmembrane helices predicted for FT BPP0835 by TMHMM2.0 at aa 15-37, 77-99, 109-131, 186-208 FT and 243-265" FT misc_feature 904449..904679 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.3e-08" FT misc_feature 904452..904538 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 904812..906662 FT /transl_table=11 FT /locus_tag="BPP0836" FT /product="ABC transporter ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3460" FT /protein_id="CAE40245.1" FT /translation="MTTTTTQSRRVLELENLSIAFGRGAHTFHAVKSLSLHVDRGETLA FT IVGESGSGKSVTSLAVMRLVEFGGGRIESGRMTFYRGAGEAVDLAAASEDSMRAMRGND FT LGMIFQEPMTSLNPVFTVGAQIVEAIRLHQACDARAAQAAAKRILDQVRIPDSASILGR FT YPHELSGGMRQRVMIAMALSCKPALLIADEPTTALDVTIQAQILQLIRELQREMDMGVI FT FITHDMGVVAEVADRVLVMRKGDVVENNDVHGLFNAPSHPYTKALMAAVPRLGAMQGTT FT APARFALLSDAQARHEAEPPAVAPSDKVVLRVRDLVTRFDVRGGIFARVKKRVHAVEQV FT SFDLHAGETLSLVGESGCGKTSTGRSLLRLAKTTRGQIEFDGKPVRQEDPASLRALRRN FT MQFVFQDPFASLNPRMRVGDCVKEPMLIHNLYSGAQADRRAAELFERVGLDAAMMQRWP FT HEFSGGQRQRICIARALSVDPKVLIADESVSALDVSIQAQIVNLLIDLQRDLGVSYLFI FT SHDMAVVERISHRVAVMYLGQIVEIGPRQAIFENPQHPYTKKLMQAVPIADPGARRSIT FT LELSELPSPARPVGDEPVVKPLEQVGPGHFVARHRIGGAY" FT misc_feature 904932..905543 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.3e-52" FT misc_feature 904953..904976 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 905313..905357 FT /note="PS00211 ABC transporters family signature." FT misc_feature 905850..906422 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 7e-58" FT misc_feature 905871..905894 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 906192..906236 FT /note="PS00211 ABC transporters family signature." FT CDS join(906731..908146,908146..908322) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0837" FT /product="bacterial extracellular solute-binding protein FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3461" FT /db_xref="PSEUDO:CAE40246.1" FT misc_feature 906731..906805 FT /note="Signal peptide predicted for BPP0837 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 25 and 26" FT misc_feature join(906740..908146,908146..908315) FT /note="This hit extended beyond the end of the feature by 0 FT aa and was clipped." FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5, score 4e-15" FT variation 908147 FT /note="(T)1 in parapertussis; (T)2 in pertussis" FT CDS join(908341..909483,909485..909877) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0838" FT /product="conserved hypothetical protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3462" FT /db_xref="PSEUDO:CAE40247.1" FT variation 909476..909485 FT /note="(CG)5 in parapertussis; (CG)6 in pertussis" FT CDS complement(909971..910912) FT /transl_table=11 FT /locus_tag="BPP0839" FT /product="LysR family regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3463" FT /protein_id="CAE40248.1" FT /translation="MLNTALRYFLEVVDAGSLTLAAQKLHVAPSAVSRMVRKLEDEHQA FT QLFERHARGMVLTEAGQLLKAYARRASLDAERARAEIRELSQIGQKLIRVSANQAFGRE FT LLPRVIGEFREIEPTVRFELNILQSSEINRRVREGEDDIGLSYNLAPPQDVHVQYARRM FT PLFAVMAPQHPLAGRDMLSMQDIGDYPVVLMGPGSTNRFFIDLCCMHEKIELNIAMTCN FT NQGAIQTCCQQWGAISFSGDLTVMTPTERGELVSIPMANSELHQRIMHIQTMAGRQLPA FT SVGRFVQALASRIDASYADPAWLAAGRGSGAL" FT misc_feature complement(910028..910657) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.2e-31" FT misc_feature complement(910727..910906) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.3e-23" FT CDS 910982..911821 FT /transl_table=11 FT /locus_tag="BPP0840" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3464" FT /protein_id="CAE40249.1" FT /translation="MIAPPLARHARVCRWPRRAISIYIRMIKKRYLATAVVALAVAVAA FT ALYARQDEPEHFDEVVLQCLDDQAMSTVRRTGSVDGILPACQPELAEVLGEDFGAVDEP FT TLRAVLATVAAANFAEYGSSSAVAYEAIEKSQHLNCGNLVFLMGYLYGGLKEKGIRPIG FT VDGGAVGNHAQIMYKSGNNRLLLDPTTGVVAAITFNKLMSGQPVPEEQVRVFRVKAKTI FT DSFRDRVYRAVVGGGYLPSDLMYMHESLWELKTKGSSSVYFTPGGITVRKKLAQAAG" FT misc_feature 910982..911128 FT /note="Signal peptide predicted for BPP0840 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.495 between residues 49 and 50" FT misc_feature 911072..911125 FT /note="1 probable transmembrane helix predicted for BPP0840 FT by TMHMM2.0 at aa 31-48" FT CDS complement(join(911882..912079,912079..912384)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0841" FT /product="conserved hypothetical protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3465" FT /db_xref="PSEUDO:CAE40250.1" FT variation complement(912081..912088) FT /note="(CCGG)2 in parapertussis; (CCGG)3 in pertussis" FT CDS complement(912381..912719) FT /transl_table=11 FT /locus_tag="BPP0842" FT /product="putative ArsR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3466" FT /protein_id="CAE40251.1" FT /translation="MPNQAAQLSQVFQALSDPTRRAVLERLCQGSAAMSELARPFNMAL FT PSFSQHLDVLERCGLVRSRKSGRVRIYTLAPQPLGMAEHWMTRQRAIWERRLDQLDLYL FT QDLKEQKR" FT misc_feature complement(912441..912686) FT /note="HMMPfam hit to PF01022, Bacterial regulatory FT protein, arsR family, score 1.1e-11" FT CDS 913148..915667 FT /transl_table=11 FT /locus_tag="BPP0843" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3467" FT /protein_id="CAE40252.1" FT /translation="MKTWFKRIVIGLVVLVVVAVVGLAIFLLTFDPNAYKYKLEEAVQA FT RYERTLNIEGEIELSLFPRIGLAVQGVSLSEPNSPDVFASIDSMRLAVAVWPLLSNSLV FT VDHVTINGFKARVIRGKDGHFNFENLVGGSVQSTDVPGNAAEATAGAITGTAQAIVNGT FT VSTPKSMQIDIAGLDLKDGEIQLQDAMSGMAVAITKLNAATGRVTYNQPFDVSLSARVE FT GGNPRVDAGLTGQAQLTLDPLAKRYAAQRLDLRMEGRLPGAQAKSLAARGNVAFNGMTS FT SLDVAGLEILFQGDIVDTATKLTNVEASVAMPKLAVDPHKTELQIDKLAVRAKGAMPGG FT PFELAVDAPALNISPTNASGDALSGRVRTQELDASFGLNGISGNAGELDIKEAKLDSTL FT KQGERVVKSAFASPVTLNLLQRSIGLSALKGDVNITDPGLPKGSLQIPVIGSVNANLLK FT DQANARINAVLEGGKFDLSADIVALSAVPRVTFALAVDTLDLDKLAPPAGASAPPKPAG FT DGKQDESKPPAKPQPAPAPAAADDSINLSGLVGPTASGTIKIGQLVMRGLKAEQVAANI FT KLEKGKLDISTLTAALYGGKLGGVMSVDAVNGNQLVAKMSLAGIAIQPLLSDLAGKDTL FT SGTGSLAFDLKTAGANTYAMKSGLAGTMQVRLRDGAIKGINVAQTLRELKAMFRGEAHD FT PTVQDDQTRQTDFTSLESDLVFNKGVATVKRLDMAAPLLRVNQGNPANIDFVRSELDFV FT ARVRVVNTSTGQDGKDLAELRNLTIPLLITGPFDKPVYTLQWREVAGEALKRGLEKQLK FT EALTGGEGASGSPAKNIDKALKGILGK" FT misc_feature 913148..913204 FT /note="Signal peptide predicted for BPP0843 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.261 between residues 19 and 20" FT misc_feature 915209..915280 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT CDS 915664..916050 FT /transl_table=11 FT /locus_tag="BPP0844" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3468" FT /protein_id="CAE40253.1" FT /translation="MSTTAYQPIAECGATTQSEAAAYQKRWLVANDAGQWLNRDLCPRL FT AEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWI FT SNHVGVPCRILKVHPDMAEVRWPS" FT CDS complement(916058..917275) FT /transl_table=11 FT /locus_tag="BPP0845" FT /product="putative transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3469" FT /protein_id="CAE40254.1" FT /translation="MNGADSASSPLAARRPVTGALSLSAIVAGLVAVLVSFGGTAVLMV FT QAGHAAGLDAARIGSWLGSICLALGVGGALISLRSRMPVVFAWSTPGAALLVTGLVGVP FT FDQAVGAFVLAAALTLACGVFGWIDPIVRRIPAELAAAMLAGVLLNFGMGIFGSIAAQP FT VLVLSMCAAYLLGRRWAPRFAVLAVLVVGLAAASSLDLLRLGHVQWAWTEFVWTTPSFT FT WQAAISLGIPLFVVAMASQNLPGLAILQAAGYRPPASRLVGLTGLAGLLAAPFGAHSVT FT LGAIIAALCAGPEAHADPGRRYVAAATYGLTYVLLSVAAGAVAVFFQALPGALIAALAG FT LALLGAIMGGMTTAMADPQRREAALVTLLATASGISFWGIGSAFWGLAAGLATHGALAW FT RRARSA" FT misc_feature complement(916088..917221) FT /note="HMMPfam hit to PF03594, Benzoate membrane transport FT protein, score 5.2e-157" FT misc_feature complement(join(916118..916183,916223..916288, FT 916301..916366,916406..916471,916532..916597, FT 916661..916726,916793..916858,916895..916951, FT 916967..917023,917045..917101,917147..917212)) FT /note="11 probable transmembrane helices predicted for FT BPP0845 by TMHMM2.0 at aa 21-43, 58-77, 84-103, 108-127, FT 139-161, 183-205, 226-248, 268-290, 303-325, 329-351 and FT 364-386" FT misc_feature complement(917126..917275) FT /note="Signal peptide predicted for BPP0845 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.678) with cleavage site FT probability 0.546 between residues 50 and 51" FT CDS complement(917272..917523) FT /transl_table=11 FT /gene="fdx" FT /locus_tag="BPP0846" FT /product="ferredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP3470" FT /protein_id="CAE40255.1" FT /translation="MALKITEECINCDVCEPQCPNEAISMGADYYVIDPDRCTECVGHH FT DEPQCKVVCPVECIELHPQWQEGQEQLMAKYRRLTGAA" FT misc_feature complement(917344..917433) FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain, score FT 0.13" FT misc_feature complement(917449..917520) FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain, score FT 0.00024" FT misc_feature complement(917464..917499) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT CDS complement(917578..918087) FT /transl_table=11 FT /gene="coaD" FT /gene_synonym="kdtB" FT /locus_tag="BPP0847" FT /product="phosphopantetheine adenylyltransferase" FT /EC_number="2.7.7.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3471" FT /protein_id="CAE40256.1" FT /translation="MIIAVYPGTFDPLTRGHEDLVRRAATLFDKVVVGIAHSRNKKPFF FT TIEERVDIAREVLGHYPNVEVHSFGGLLKDFVRDQNGRVIIRGLRAVSDFEYEFQMAGM FT NRHLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVERWLQAKAKERREQ FT SAQGGA" FT misc_feature complement(917689..918087) FT /note="HMMPfam hit to PF01467, Cytidylyltransferase, score FT 1.4e-38" FT CDS complement(918108..918728) FT /transl_table=11 FT /locus_tag="BPP0848" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3472" FT /protein_id="CAE40257.1" FT /translation="MKPSRPGSKPIRIVGGLYRRTLIPVADAPGLRPTPDRVRETLFNW FT LNHLWGGEFADKRVLDLFAGSGALGFEAASRGAGQVQMVERDRGAAAALRTLRDKLQAG FT AVRIHAGDAMQVIERMDASRFDLVLLDPPFGQGWLERLWPLLPAVLAEDGLVYVESETA FT PAPPAGFELLREGKAGAVHYRLFQFAAMRKSMNNPALEDGASH" FT misc_feature complement(918168..918698) FT /note="HMMPfam hit to PF03602, Conserved hypothetical FT protein 95, score 1.4e-56" FT misc_feature complement(918327..918347) FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT CDS 918936..920003 FT /transl_table=11 FT /gene="ftsY" FT /locus_tag="BPP0849" FT /product="cell division protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3473" FT /protein_id="CAE40258.1" FT /translation="MPAPQPEPQPEPQPQQPPEPAPPAMASPPVAESQPPVAEPQPPVA FT AAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEK FT LLAALRARVKKERIDDPAQVKTALRQLLADHLWPLERSFDLGRAQPLVVMIAGVNGAGK FT TTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFD FT SVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQ FT NALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDL FT QPFVADEFAAALLAD" FT misc_feature 919101..919346 FT /note="HMMPfam hit to PF02881, SRP54-type protein, helical FT bundle domain, score 1.2e-12" FT misc_feature 919377..919997 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00448, SRP54-type protein, GTPase FT domain, score 7.5e-97" FT misc_feature 919404..919427 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(920050..921648) FT /transl_table=11 FT /locus_tag="BPP0850" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3474" FT /protein_id="CAE40259.1" FT /translation="MSEQELKLHVPAAARAAVQQQIQQRQAARIRLHAMYFDTPGRELA FT RARIAIRLRQEGRDWVQTLKMPGANAISRVEINHPRPGPVLDLSVYAGTEAQAALTAIK FT GELGLRYETDVQRLFCKVRGRHGTVELAYDTGVLRAGALELPISELEFELVSGRPAAIF FT AMARSWLQRHGLVLDARSKSERGDALAQLAHDLAAAPGEADDAARATRDQQAVAGFWAP FT RNAGAVKLDESMTPMQAMAAVAAECVDHIARNAAVLAEVDTLGVYRAGTPEHVHQLRVG FT VRRLRSAWRLFDGWIADPSETLAQGARTHFSAFGMARDQDVLADTIMPLLARAGMPALP FT AEAAPSNDNAQSLAADRAFQGWLLELLAWSLDVPPPPAPAATAEAAPASPTIIPLAPPA FT EAAPPALRKRLTGRLRRWHLKVIDEGLRFGALELEARHELRKRVKRLRYGLSFAESLLP FT AARLRTYRKQLARVQDLLGEINDLAVARDYYQAALQAHPQAWFAVGWIGARLDGLTPQA FT QEAFDQLAHAKPFWK" FT CDS complement(921887..922708) FT /transl_table=11 FT /locus_tag="BPP0851" FT /product="binding-protein-dependent transport system FT permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3476" FT /protein_id="CAE40260.1" FT /translation="MNTSVTSLEPGHPRTWQRYSGGQKALRFMLYLLLVAAIVQAVRSV FT EVIPEFLYDAPEQMADLLRRMWPIDWSYYPEGVHAALVETLHIATLGTILSVGMAVPVG FT LLAANNLTPSRTINMLARLILVSSRSVNSLVWALLFIAIFGPGALAGTLAIAFRSIGFV FT GKLVGEAIEEAQRGPIEALTATGASKAAVLWYGYWPQIRPSFWSIVLLRWDINVRESAV FT LGLVGAGGIGMALDTALNLFQWDRVALVLAAIFIVVVAAEIVITQARKRIL" FT misc_feature complement(join(921911..921967,921983..922048, FT 922241..922306,922370..922435,922583..922633)) FT /note="5 probable transmembrane helices predicted for FT BPP0851 by TMHMM2.0 at aa 25-42, 91-113, 134-156, 220-242 FT and 247-266" FT misc_feature complement(921971..922201) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.00032" FT CDS complement(922705..923604) FT /transl_table=11 FT /locus_tag="BPP0852" FT /product="binding-protein-dependent transport systems inner FT membrane component" FT /note="ortholog of Bordetella pertussis (BX470248) BP3477" FT /protein_id="CAE40261.1" FT /translation="MAGVTVRTANMARRPFSLSWRAKTGVLLVVLYTFYAAAQLDFSWA FT RFETGLGHAATFLARMFPPNFEKPDTLWKGIAESLEIAVLASVLGILLSLPIGLLGARN FT LMPAWASWPARALVALCRALHPVIVAILFVKAVGFGALAGILALTVASIGFIGKLFTEA FT IEEISLKQVKAVRASGASFGNVIIFGVLPQVFARFVGFATYQFDSNLRNSTMVGIVGAG FT GIGGTLFSAFQRFDYDFVAAILLTLIAIIMLGEILAGFVRKVFLDNMGFERILQRRFTA FT ARGLGSTTPLARKGEVDE" FT misc_feature complement(join(922822..922887,922909..922965, FT 922996..923061,923125..923190,923203..923259, FT 923299..923364,923488..923553)) FT /note="7 probable transmembrane helices predicted for FT BPP0852 by TMHMM2.0 at aa 17-39, 80-102, 115-134, 138-160, FT 181-203, 213-232 and 239-261" FT misc_feature complement(922906..923118) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.0023" FT CDS complement(923592..924362) FT /transl_table=11 FT /locus_tag="BPP0853" FT /product="putative transport system ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3479" FT /protein_id="CAE40262.1" FT /translation="MATSLRITGLVKEYRAGKPVLNGIDLDIAGQGLTAIIGPSGTGKS FT TLLRCINRLIEPTSGEIVLKDAEGTVDLARVRGQSLRRARRRIGMVFQEYNLVERLTVM FT ENLLTGRLGYTSALNAWMRRFDPADIERAFQLLDTVGLAGFADQRADALSGGQRQRVGI FT ARALMQRPQLLLADEPTSSLDPKTSVEIMKLLTEQGSVNGIPVLVNIHDVELARRYANR FT IVGMSGGHVVYDGDGKGLDATMLKTIYGGESWLE" FT misc_feature complement(923676..924272) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 6.1e-55" FT misc_feature complement(923862..923906) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(924228..924251) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(924365..925372) FT /transl_table=11 FT /locus_tag="BPP0854" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3481" FT /protein_id="CAE40263.1" FT /translation="MRAKRLLQAAAVTALIFGSYAAQAADAACSNRGDLDNMYCDANKD FT LVADTPTDKSKLKTPSTLVFTYTPVEDPAVYEDIFKPFTKHLSECTGKRVVFYQVQSNA FT AEIEAMRSGRLHVGGFSTGPTAFAVNIAGAVPFAVKGYADEFQGYNLIVIVKKDSPYQK FT LTDLKGKKLAHTAPSSNSGHMAPVALFPKEGLTPDKDYKVIFSGKHDQSVMGVNSGDYD FT AAAVASDVFKRMAERGQVKEEDFRVIYRSEKFPTSSFAYAHDLEPAFRDKMLKCFYDYR FT FPDEMKKAFDGADRFYPVTYQKDWAIVREVAESGGEKFNRAAYDRETAKSKGKQ" FT misc_feature complement(925301..925372) FT /note="Signal peptide predicted for BPP0854 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.923 between residues 24 and 25" FT CDS complement(925521..926348) FT /transl_table=11 FT /locus_tag="BPP0855" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3482" FT /protein_id="CAE40264.1" FT /translation="MSAAKSTAKPAAAPGNDGRRSIQSVEVGFPLLAALVDAGRPLTLR FT DLAGAAGMTSAKAHPYLVSFTRVGLVQQDTVTGQYELGPFALQMGLVSLQRLDPVRVAL FT PEVDKLQSEIGHTLGIAVLGSHGPTMIHITEASYPVHVNMRKGTVMSMLHTATGQVFAA FT WLPPKMAEHYIAREDGDAAVIASLTPRKTTRANLDAMLADIRVHGMARALGSPLPGVDA FT LSVPVFDHTGGIVLALTSLGPTGLFDASFTGAIARPLLACAQEISRKLGYRGN" FT misc_feature complement(925542..926111) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 8.1e-11" FT CDS complement(926354..927151) FT /transl_table=11 FT /locus_tag="BPP0856" FT /product="haloacid dehalogenase-like hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3483" FT /protein_id="CAE40265.1" FT /translation="MQALAAMPAPVAASVRIVLTDIDDTLTTEGRLPAGAYAALERLEQ FT AGIVVVPITGRPAGWCDHIARMWPVRAVVGENGAFYYAYDRSARRMNAHYWADAATRAA FT NRQALQAIRERVLREVPGTAVASDQDYRVADLAIDFCEDVPALPDGAVGRIVEIFHEAG FT AQAKVSSIHVNGWFGDYDKLTMTRTLFEREFGLNIDSALQHTLFIGDSPNDEPMFKFFP FT ISVGVANIQSQLHRIQHRPAFVAAARGGDGFVEMAERLLANRG" FT misc_feature complement(926459..927109) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase, score 0.011" FT CDS 927150..928472 FT /transl_table=11 FT /gene="ribB" FT /locus_tag="BPP0857" FT /product="putative 3,4-dihydroxy-2-butanone 4-phosphate FT synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3484" FT /protein_id="CAE40266.1" FT /translation="MGLLEGICRYRGAILKREVYRARAARRRAGRDRAKGAKIAAFQPG FT RARFMSAQISSLNAGAAPESFGIASVPEIIAELRAGRIVILVDEEDRENEGDLVMAAEF FT VTPEAINFMVTHGRGLVCLTLTEERCRQLDLPLMASRNGTRYGTNFTQSIEAAEGVETG FT ISAADRARTIQVAVARDAQPSDLVQPGHIFPVRAVPGGVLVRAGHTEAGCDLTAMGGLT FT PAAVICEILKPDGTMARLPDLVEFAREHKLKIGTIADLIQYRSEHESIIARMGERMMQT FT PWGDFRCIAYRDDATRSPHLALVHGNIDPERETLVRVHEPASLLDVLDTGASPHSWSVG FT QALHAIAASPAGVLVLMNCQSSTEHLFGQIANWAGPAERAAAQEGDRFGLRTYGIGAQI FT LRDLNVGRMKLLARPRKMPSMAGFALTITGYDCAPPNLRND" FT misc_feature 927360..927947 FT /note="HMMPfam hit to PF00926, 3,4-dihydroxy-2-butanone FT 4-phosphate synthase, score 4e-111" FT misc_feature 927954..928448 FT /note="HMMPfam hit to PF00925, GTP cyclohydrolase II, score FT 9.2e-08" FT CDS 928486..929013 FT /transl_table=11 FT /gene="ribH" FT /locus_tag="BPP0858" FT /product="putative 6,7-dimethyl-8-ribityllumazine synthase" FT /EC_number="2.5.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP3485" FT /protein_id="CAE40267.1" FT /translation="MNPYILTPDLNGEGLHIGIVRARFNEEIGQAQLQACLEELGKLGV FT DERDVMVVSVPGALELGVALARMAESYEFDALIALGAVIRGETYHFEVVSNESAAAISR FT IALETGIPVANGVLTVDTDEQAQARAAGKGADCAQVAVEMANLAAALEPEEDDEDEDDE FT DEDFDDEEDDGR" FT misc_feature 928519..928938 FT /note="HMMPfam hit to PF00885, FT 6,7-dimethyl-8-ribityllumazine synthase, score 1e-43" FT CDS 929021..929485 FT /transl_table=11 FT /gene="nusB" FT /gene_synonym="ssyB" FT /locus_tag="BPP0859" FT /product="N utilization substance protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP3486" FT /protein_id="CAE40268.1" FT /translation="MQARANARSARRRAREFALQGVYAWLLRGGEGTQDAGEIDAHLRD FT AEDFSEADAQWFKTLLHGVLREAPVLRERFLPYIDRPLAELSPVEHGILLIGSFELMHH FT VEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKLAADVRTAEVQAAPRR" FT misc_feature 929054..929449 FT /note="HMMPfam hit to PF01029, NusB family, score 7.1e-21" FT CDS 929525..930541 FT /transl_table=11 FT /gene="thiL" FT /locus_tag="BPP0860" FT /product="putative thiamine-monophosphate kinase" FT /EC_number="2.7.4.16" FT /note="ortholog of Bordetella pertussis (BX470248) BP3487" FT /protein_id="CAE40269.1" FT /translation="MLAGVALASEFDLIARYFTRPAPDGVLGVGDDCALFPVPPGQQVA FT TSTDLLIEGRHFFPDVDPQALGHKALAVNLSDLAAMGARPVGCLLGLALPGVDEAWLAA FT FARGFQALADTHACPLIGGDTTRAPQRLLAISVTVFGAVAPGHALRRAAAQPGDDVWVS FT GELGAADIAYRLLDRQLPADPLRLAATRAALEWPRPRVELGMALAGLARAGIDISDGLL FT QDLGHILAASGVAAELRYDALPVAAALAGLPAETVRRAALGGGDVYELCFTADPAHRQA FT IGQAAHGAGAPVSRIGRILAGQGLRVLDADGAPLGELPGGFDHFSDATDQPAPGRRP" FT misc_feature 929984..930454 FT /note="HMMPfam hit to PF02769, AIR synthase related FT protein, C-terminal domain, score 0.003" FT CDS 930538..931080 FT /transl_table=11 FT /locus_tag="BPP0861" FT /product="putative phosphatidylglycerophosphatase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3488" FT /protein_id="CAE40270.1" FT /translation="MNPPDANPDPTSMQARTRVSYPSWSWVRARPARLLAFGLGSGLLR FT PASGTWGTLLAWLSWFVFAPLAPDWALGMGIAAAFAYGCLACGQAGRELGVSDHVGMVW FT DEIVAFWLVLWLVPQTVAAQALAFVLFRVFDIAKPPPIKYFDARIKGGFGVMWDDIVAA FT AYTLLVMAILVRMGVFT" FT misc_feature join(930658..930726,930745..930813,930856..930924, FT 930991..931059) FT /note="4 probable transmembrane helices predicted for FT BPP0861 by TMHMM2.0 at aa 41-63, 70-92, 107-129 and FT 152-174" FT CDS 931077..931643 FT /transl_table=11 FT /locus_tag="BPP0862" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3489" FT /protein_id="CAE40271.1" FT /translation="MSLHDTQGRAGLAPTPLTAAAIQGLAEMVGEALLRRDWMMGTAES FT CTGGLLAGAVTSVAGSSDWFERGFVTYSNAAKVAELGVSGETLDHYGAVSEPVALEMAN FT GVLLATPSAQVGVSTTGIAGPGGATPGKPVGMVCFGFAMRAHGGITSRAITHVFPGDRA FT QVRNASVEFALRGILEFLGEPVNRG" FT misc_feature 931140..931619 FT /note="HMMPfam hit to PF02464, Competence-damaged protein, FT score 2.9e-62" FT CDS complement(931782..932603) FT /transl_table=11 FT /gene="pyrF" FT /locus_tag="BPP0863" FT /product="putative orotidine 5'-phosphate decarboxylase" FT /EC_number="4.1.1.23" FT /note="ortholog of Bordetella pertussis (BX470248) BP3490" FT /protein_id="CAE40272.1" FT /translation="MTFLKKLEHAWSASQSLLQVGLDPDPKRFPRELEGKPDAIFQFCR FT DIVDATAPYACSFKPQIAYFAAHRAEDQLEALCQHIRAQHPDLPIVLDAKRGDIGSTAE FT NYAREAFERYQAHALTVSPYMGLDSVEPYLAWGDRGVIVLCRTSNPGGSDLQFLKMADG FT QPLYLHVAGLVADKWNANGQCGLVVGATFPNELAAVRQRIGDAVPLLVPGIGAQGGDIN FT ATVQAGANSAGAGMMINSSRAILYASTGEDWRQAAGEAARGLRDAINAVRT" FT misc_feature complement(931836..932558) FT /note="HMMPfam hit to PF00215, Orotidine 5'-phosphate FT decarboxylase / HUMPS family, score 1.5e-36" FT misc_feature complement(932295..932336) FT /note="PS00156 Orotidine 5'-phosphate decarboxylase active FT site." FT CDS complement(932611..933930) FT /transl_table=11 FT /gene="ndh" FT /locus_tag="BPP0864" FT /product="putative NADH dehydrogenase" FT /EC_number="1.6.99.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3491" FT /protein_id="CAE40273.1" FT /translation="MTQTPNTGSPHRVVIVGGGAGGLELAAKLGRAHGRERVTLVDSRP FT FHIWKPSLHEAAAGTLDIHQEGLSYLMLANMCNFTFAQGELQGIERERRQIQVGPVADP FT SGQQVLPPRELSYDTLVLAMGSTSNFFNTPGAAEHAVTLDTTENAEQFRLTMLKAMVQV FT DLRKVHDPSARLDLVIVGGGATGVELAVELIEASHVVSAYGLPNFRADRDLVITLVEGA FT PRILSALPEKISRAAHARLTELGVRVETDCRVAEVGADHVVTADGRRFEATMCLWAAGI FT EGPPLFRQLGLPLNRLGQLEVNERLESPDPHILALGDCCAAPWKDGRTVPARAQAAHQQ FT ADYLARKLTARLRNAAEPTEAYAYHDHGSLVSLGQGSGVGSLMGKLAGRGLFVSGTLAR FT LMYMSLHLMHHRAVLGISRTATLALARLLMRRTRPRVKLH" FT misc_feature complement(932935..933897) FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, score 1.3e-38" FT CDS complement(933981..934379) FT /transl_table=11 FT /gene="dgkA" FT /locus_tag="BPP0865" FT /product="putative diacylglycerol kinase" FT /EC_number="2.7.1.107" FT /note="ortholog of Bordetella pertussis (BX470248) BP3492" FT /protein_id="CAE40274.1" FT /translation="MAHTPHPSPFKSTGGLRRILNALRYSLQGLKAAIKYEAAFRQELV FT LAILLVPAAFFLGRTTDEVFILIASVILVLVAELLNSAIEALADALSVETHPLLGRAKD FT LGSAAVMLMLLFTLAVWVAVLISRFVLD" FT misc_feature complement(join(933987..934052,934119..934184, FT 934206..934262)) FT /note="3 probable transmembrane helices predicted for FT BPP0865 by TMHMM2.0 at aa 39-58, 65-87 and 109-131" FT misc_feature complement(933999..934334) FT /note="HMMPfam hit to PF01219, Prokaryotic diacylglycerol FT kinase, score 2.1e-33" FT CDS complement(934470..935360) FT /transl_table=11 FT /gene="brkB" FT /locus_tag="BPP0866" FT /product="serum resistance protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3493" FT /protein_id="CAE40275.1" FT /translation="MRLPRQIRLPHLRDIGALLTDSAREWSRHRASSKGAALSLYMVFS FT LAPMLILVIAVAGAFFGEEAVRSELFSQVRDLTGERGAEVIQTVLASAHESGSGWLAAL FT LSICVLVFSATTAFAELKASLDELWDVKEDKSGLQGLVRSRMLSFGLVLVLALFLLLSL FT TLNAALGAAKGYYGDLWSTSAFAMAADWLSNLFSFAVVTALFAVVYKLLPSKRIPWLDV FT IPGAIVTAALFLAGKWGIGLYLERGTAVSAYGAAGSLIALLLWIYYSAQIFFFGAVFTR FT QFAERFGNLRRAAPA" FT misc_feature complement(934500..935282) FT /note="HMMPfam hit to PF03631, Ribonuclease BN-like family, FT score 1.2e-79" FT misc_feature complement(join(934533..934598,934629..934694, FT 934734..934799,934845..934910,934998..935063, FT 935181..935246)) FT /note="6 probable transmembrane helices predicted for FT BPP0866 by TMHMM2.0 at aa 38-60, 99-121, 150-172, 187-209, FT 222-244 and 254-276" FT CDS join(935662..935958,935960..938704) FT /pseudo FT /transl_table=11 FT /gene="brkA" FT /locus_tag="BPP0867" FT /product="serum resistance protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3494" FT /db_xref="PSEUDO:CAE40276.1" FT misc_feature 935662..935787 FT /note="Signal peptide predicted for BPP0867 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.649 between residues 42 and 43" FT variation 935953..935959 FT /note="(C)7 in parapertussis; (C)6 in pertussis" FT misc_feature 937469..938699 FT /note="This hit extended beyond the end of the feature by 0 FT aa and was clipped." FT /note="HMMPfam hit to PF03212, Pertactin, score 2.1e-240" FT CDS complement(938806..940449) FT /transl_table=11 FT /gene="cpn60" FT /gene_synonym="groEL" FT /gene_synonym="mopA" FT /gene_synonym="groL" FT /locus_tag="BPP0868" FT /product="60 kDa chaperonin" FT /note="ortholog of Bordetella pertussis (BX470248) BP3495" FT /protein_id="CAE40277.1" FT /translation="MAAKQVLFADEARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFG FT APTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAVVQEGL FT KYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPVTTSKEIAQVGSISANSDASIGQIIA FT DAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINSPEKQVAALDDPYVLI FT YDKKVSNIRDLLPVLEQVAKSSRPLLIIAEDVEGEALATLVVNNIRGILKTTAVKAPGF FT GDRRKAMLEDIAILTGGTVISEETGMSLEKATLQDLGQAKRIEVAKENTTIIDGAGDGK FT SIEARVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVEDA FT LHATRAAVEEGVVPGGGVALLRAKQAITGLKGDTADQNAGIKLILRAVEEPLRTIVTNA FT GDEASVVVNTVLNGKGNYGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTA FT EAAVVELMEDKPAAAPAMPGGMGGMGGMDF" FT misc_feature complement(938875..940383) FT /note="HMMPfam hit to PF00118, TCP-1/cpn60 chaperonin FT family, score 4.2e-243" FT misc_feature complement(939202..939237) FT /note="PS00296 Chaperonins cpn60 signature." FT CDS complement(940482..940769) FT /transl_table=11 FT /gene="cpn10" FT /gene_synonym="groES" FT /locus_tag="BPP0869" FT /product="10 kDa chaperonin" FT /note="ortholog of Bordetella pertussis (BX470248) BP3496" FT /protein_id="CAE40278.1" FT /translation="MALRPLHDRVIVKRLDNERKTASGIVIPDSAAEKPDQGEVVAVGP FT GKKTEDGKILPVDLKAGDKVLFGKYAGQTVKVDGEELLVIREDEILAVIQ" FT misc_feature complement(940488..940769) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00166, Chaperonin 10 Kd subunit, FT score 2.5e-59" FT misc_feature complement(940689..940763) FT /note="PS00681 Chaperonins cpn10 signature." FT CDS complement(941161..941790) FT /transl_table=11 FT /locus_tag="BPP0870" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3497" FT /protein_id="CAE40279.1" FT /translation="MTHSKALLLVSMEPPAGMEAEFNDWYDTEHLPERAGLPGFETALR FT YVCVAGWPRYLALYDLSNIEVLDDKPYQDVSGERFSPWSKRVLNRVRGQSRMAAQQVYP FT RQAITQRAPRLLLLRFVGLTLQHEADLVSTLRSAFSNRAGVQQLRVYREPADNGPRFLA FT LVEAHESFSHQEKTSGLGPYARHLDMINEYTPYWTRGALHGVYPES" FT CDS complement(941787..942488) FT /transl_table=11 FT /locus_tag="BPP0871" FT /product="conserved hypothetical protein" FT /EC_number="4.1.1.76" FT /note="ortholog of Bordetella pertussis (BX470248) BP3498" FT /protein_id="CAE40280.1" FT /translation="MHKSHYQRFIMPTAIRIGVLIPENNTRVAEELPLWLPGCRLEVVK FT IPRDKGLLNAAALPAYKENALALAREKLGTGDIDVVAYGCTAAGFLLGPVGDQELARQL FT RENTGKPVATIASSMTSVLTQDGIRKVAVVTPYSDAVNAQLKGFISNAGIEIAAFDSLY FT AKDVDELGRISAQAVSHIARQTMNDDCEAMFIACAQLPTFNVLHQLETEFGRPVYSSIQ FT AMATQIQAIAS" FT misc_feature complement(942213..942263) FT /note="PS00606 Beta-ketoacyl synthases active site." FT CDS complement(942537..943172) FT /transl_table=11 FT /locus_tag="BPP0872" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3499" FT /protein_id="CAE40281.1" FT /translation="MTKALLLAMMTPPGDLEEEFNEWYDTEHFPRLSTVPGFDRSSRYV FT AVKGWPKYVALYDLASVNALEHPQYTRAPGARFSPWAQRILTKLHGQYRFSGDQIYPGP FT ALMGDRGRPLQVAVMRFREMPGAHEAALIEGLQAIVDSSEDLLQARVFRGSGPLQGDYI FT ALVECRAHDPRIPVTASALGPAADHLDLMTFYIPYWRRGYVPSVFEAQ" FT CDS complement(943216..944925) FT /transl_table=11 FT /locus_tag="BPP0873" FT /product="putative dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3500" FT /protein_id="CAE40282.1" FT /translation="MSPVVSEASPERWDDETDVLVIGSGAGGLSAALFAAQAGLRVLIC FT EKLAYVGGTTATSGGGIWVPGTKAGLAAGDTLEAARTYLKALLGDFYQEEVIDTYLATG FT GKVIDFLNENTEVKFDLSSWPDYRSSLPGGATRGRSLFPQPFDGKKLGRNFSLLHPPLH FT RLMVLGGLMLGPEEVHDFLRPFSSPRALMRVLRKLLRYGMDRIRYARGTDLRSGNALAA FT RLLYSVDKLGCRILTQADLESLAIDHDRVIGATVVVGGVPKRIRASKAVLLATGGFAHN FT QEMLRRYGPATPHRFSLCNPACTGAGIQAALDAGASVDRELSSVGFWTPASASREKNGA FT DTPVIYSYLDRGRPGVIAVNEQGERFVNEANSYHDIVTAIFANGGADGKPFYFITDREF FT VRRHGLGLIRPWPWNRSLRPWIRRGYITVASTLDKLGPKIGIDPGALAAAVQRHNQSAR FT TGQDPDFHKGASAYNRMFGHNMIWPNPNLAPIETPPFVALRIHPATIGTAMGLKTSASG FT QALNAAGQPISGLYACGNDQASPFRGFYPGGGSTLGPAIVGAYLAVQSLSKQ" FT misc_feature complement(943687..943719) FT /note="PS00133 Zinc carboxypeptidases, zinc-binding region FT 2 signature." FT CDS complement(944987..945937) FT /transl_table=11 FT /locus_tag="BPP0874" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3501" FT /protein_id="CAE40283.1" FT /translation="MIKLMLAGLAALMPMLSMASDYPSKPVTLIAGFAAGGPTDVMARA FT FAQQLAAELGVPIVVENRPGADSLLASQAVRNAKPDGYTIYLASSAHAINPSLFKDAKF FT KVRDDFTPISTIGEVPNVVAIPTDLPARTLKEFIDYAKARDGQLNYATTASITYLQTAL FT MLKSAGLNLQRIPYKGAAPAAVALMSGDVQFMMSGIGPMVPQIQSQKIRALAVTSAKRS FT ALLPDLPTAIEAGLPGFTSTVWYALLAPANVPPDIVKRLNESTRAALQNPDLIAKLTAQ FT GVEQRGSSPEELSQFLAAEEAKWMATVDELGARQQ" FT misc_feature complement(944999..945814) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.7e-84" FT misc_feature complement(945881..945937) FT /note="Signal peptide predicted for BPP0874 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.990 between residues 19 and 20" FT CDS complement(946544..947557) FT /transl_table=11 FT /locus_tag="BPP0876" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3503" FT /protein_id="CAE40284.1" FT /translation="MPNTIHQDEGRPIVNSNDHDSPAESRASGVLNLTHLRTLVAVVQE FT GHLTRAAERLRISQPAASHHLRSLEQQFGLPLFTRTPRGVVPTAAGLQLSEQAARLLAS FT SLELLSTASELRGSASGKIAIGTIEDPSVHAALPSLVKWFHEHYPLIELSIESRNSSSV FT RQGILTGEINAGFYVSCTNEANLREYEIGQRELVVVAPQSWRERVATATWPELAKLPWV FT MTTTGSAHSEITAQLFRSHNITIRPALEVNTERLLRAMVSQGVGLGFTRREFAEAERAR FT GAFFIVPISVHRTTMHFAYARSAETDPLIQILSRGLATVLPVAERLIPPTAKPAEK" FT misc_feature complement(946592..947212) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 3.3e-25" FT misc_feature complement(947282..947461) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.5e-26" FT misc_feature complement(947327..947419) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 947605..949350 FT /transl_table=11 FT /locus_tag="BPP0877" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3504" FT /protein_id="CAE40285.1" FT /translation="MKDVTPALADYPWDGERDVIVIGSGCAGLSAALLAAKKSLDVVLC FT EKSSQVGGTTASAGGVMWIPNSREARAAGVDDSSEQVRVYLRALMGAYYRADLVDPYLK FT SAPLAAQAIQEDTQVRLKLMPAMSDYHASLPGGKAGGRSLEPERFDGRRLGADFELVRA FT PIKRLMLLGGLYIDKRRIDEFLNPFGSFRNFIGVIRTLARYAIDRTRFSRGTDIGAGNA FT FVASALLSLRERGVPIWLNSPMVSLVRNPQGGVAGVAICRDGKLQRIRARKGVILAAGG FT FPRNAALLEELAGGFPHDQSVGYEGNVGDTLQAARQAGAAIDADLASPCWWTPTSRNKE FT ADGSMSTVLYGYLDRSRPGMIAVNAAGKRFVNDSDSYHDIVYAMFKDGVTPDSRFYLIC FT DRRFVWKRGLGNLIKPYCLSLGRYVRSGYISTGRSIRELAAAIGIDPDALEVTVTRHNG FT FCETGVDLDFGKGGNPYNRMFGDPRVKPNPNLLAIRHAPFFALRIYPGTLGTILGLKAT FT ADAQVVGQDGEAIPGLYACGNDMSSVFRGFYPGAGATLGPGLVFAYRAIEHLARSSGGS FT AAQSA" FT CDS 949461..950426 FT /transl_table=11 FT /locus_tag="BPP0878" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni Orf4 protein FT SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): FT 1.4e-35, 37.06% id in 313 aa, and to Comamonas testosteroni FT OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta FT scores: E(): 1e-30, 34.06% id in 320 aa" FT /protein_id="CAE40286.1" FT /translation="MSFFGRLGMACAMLTLAVPLAVRSAYPEKQVRIIVPFASGSLTDV FT VFRSLAMELERELGQPVIIDNKPGASGIIGTRAALSAAPDGYTLVSVGVTNGASNKSLF FT KDLPYDPSKDFTPIGKVADSPFVLVVRADSPINSLADLYKQARAEPDSVRYGYASGSAQ FT VSGAMLANAADARFALIPYKSSQQILTDIVGQVVDVTLSDFAGGMALVRGDKLKALGVT FT SRTRFPLAPELPTLIEGGAQDYEITVWFGLVGPAQLPQDVQRRLSDALVNALKRPQLIE FT RFTTQGLTATPSSSQEFKTFLDKEILVWGQMIKSAGLTPQ" FT misc_feature 949461..949532 FT /note="Signal peptide predicted for BPP0878 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.462 between residues 24 and 25" FT misc_feature 949596..950414 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 6.4e-81" FT CDS complement(950463..951215) FT /transl_table=11 FT /locus_tag="BPP0879" FT /product="probable transcriptional regulator" FT /note="Similar to Bacillus halodurans transcriptional FT regulator Bh2137 SWALL:Q9KAZ9 (EMBL:AP001514) (251 aa) FT fasta scores: E(): 1.3e-14, 29.52% id in 254 aa, and to FT Streptomyces coelicolor putative iclr-family FT transcriptional regulator Sco2544 or Scc77.11 SWALL:Q9RDE7 FT (EMBL:AL136503) (265 aa) fasta scores: E(): 2e-13, 30.95% FT id in 252 aa" FT /protein_id="CAE40287.1" FT /translation="MEVKLVVRTLDVFELFSKEGKPLSLTDMARALDVPMSSTLALVRT FT LVAKGYLYETRKRGGYFPTRKMLLVCQSIDAADQVLELVRPFLEELRNISQETAVLGKR FT QDGQVIYLDVALSHQPIRYHVQVGESRAAHTNSIGKAIFPMLDEKEQKALLAKANWRAL FT TSRTIATREAFLRDMAQTKARGWSSNVGESVEDLAAVALPFQLASEWYAVSIVGPYERM FT ERNWDAHVETLLQTGARLRQAIAVHEGQ" FT misc_feature complement(950487..951035) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 2.4e-19" FT CDS complement(951330..951713) FT /transl_table=11 FT /locus_tag="BPP0880" FT /product="probable carboxymuconolactone decarboxylase" FT /EC_number="4.1.1.44" FT /note="Similar to Agrobacterium tumefaciens gamma FT carboxymuconolactone decarboxylase PcaC or Atu4541 or FT agr_l_653 SWALL:Q9KX42 (EMBL:U32867) (144 aa) fasta scores: FT E(): 3.3e-10, 35.34% id in 116 aa, and to Yersinia pestis FT putative gamma carboxymuconolactone decarboxylase Ypo3649 FT SWALL:Q8ZAY3 (EMBL:AJ414158) (131 aa) fasta scores: E(): FT 7.9e-16, 42.14% id in 121 aa" FT /protein_id="CAE40288.1" FT /translation="MAKTRLEVGRDILKQTLGDAYYAQRVDSTNSFNGSLRRLTDEYCF FT GEVWGDETLTPKQRSMLVIALLACMGRVQELKTHVGGAVNNGCNVEEIRAVMMQVAIYC FT GIPAGVEGTRTAEGVLRERKLID" FT misc_feature complement(951360..951650) FT /note="HMMPfam hit to PF02627, Carboxymuconolactone FT decarboxylase, score 2e-14" FT CDS complement(join(951729..952418,952422..952637)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0881" FT /product="probable 6-phosphogluconate dehydrogenase FT (Pseudogene)" FT /EC_number="1.1.1.31" FT /note="Similar to Escherichia coli FT 2-hydroxy-3-oxopropionate reductase GarR or B3125 FT SWALL:GARR_ECOLI (SWALL:P23523) (294 aa) fasta scores: E(): FT 3.4e-22, 32.87% id in 289 aa, and to Ralstonia solanacearum FT probable 3-hydroxyisobutyrate dehydrogenase oxidoreductase FT protein MmsB or Rsp0649 or Rs05573 SWALL:Q8XS32 FT (EMBL:AL646080) (298 aa) fasta scores: E(): 3e-28, 40.06% FT id in 292 aa" FT /db_xref="PSEUDO:CAE40289.1" FT misc_feature complement(join(952152..952418,952422..952637)) FT /note="HMMPfam hit to PF03446, NAD binding domain of FT 6-phosphogluconate dehydrogenase, score 0.00023" FT CDS complement(952891..953577) FT /transl_table=11 FT /locus_tag="BPP0882" FT /product="probable hydrolase" FT /note="Similar to Pseudomonas aeruginosa probable hydrolase FT Pa2419 SWALL:Q9I162 (EMBL:AE004669) (226 aa) fasta scores: FT E(): 8.3e-73, 88.68% id in 221 aa, and to Salmonella FT typhimurium and Salmonella typhi SlsA or Stm3761 or Sty4025 FT SWALL:Q9Z622 (EMBL:AF106566) (226 aa) fasta scores: E(): FT 3.4e-66, 80.54% id in 221 aa" FT /protein_id="CAE40290.1" FT /translation="MSVFAQIANFNGQVPRIDPDNAVMLLIDHQSGLFQTVHDMPMPTL FT RSNATTLARIATLAKMPVITTASVPQGPNGPLIPEIHESAPHARYVARKGEINAWDNPE FT FVAAVKATGKKQLIIAGTITSVCMAFPCIAAVAEGYQVFAVVDASGTYSKMAQEITLAR FT VVQAGVVPMDTAAVCSEIQRTWNRPDAEKWAEAYSAVFPDYQLLIESYLKAQAVVTNKE FT QLDSQR" FT misc_feature complement(953041..953529) FT /note="HMMPfam hit to PF00857, Isochorismatase family, FT score 1.3e-13" FT CDS 954122..955753 FT /transl_table=11 FT /locus_tag="BPP0883" FT /product="lactate permease family protwin" FT /note="Similar to Escherichia coli glycolate permease GlcA FT or B2975 SWALL:GLCA_ECOLI (SWALL:Q46839) (560 aa) fasta FT scores: E(): 1.5e-27, 25% id in 560 aa, and to FT Campylobacter jejuni L-lactate permease LctP or Cj0076C FT SWALL:Q9PJ45 (EMBL:AL139074) (560 aa) fasta scores: E(): FT 4.2e-30, 26.48% id in 555 aa" FT /protein_id="CAE40291.1" FT /translation="MDSTPGLMHWLLAALPIVALIVLMVAMRWTAQQAGTTGIFIASAV FT AVLAFATPLDTLAVASAKGVWDALFILYVIWPALLLYHVMSHSGGYDALRRGIELMSRN FT ELFVIVALGWVFASFLQGIDGFGTPIAVVAPLLVAFGMRPVYAVAIPIIAHIWAKFYGT FT LGVGWLATLQVVDIDAATTASTALQAALLISIQAVLGGFTIVWLYGRWAAIRSGWPLVL FT VIAAIQGLGQVAAVYVDPVLAAFLPVTAALVALIPLSRWSRYREPDASIVERPAMLDHA FT SRKRVDAEPPMGLWTALAPYGLLTVLALCVSMIDPLHSRLDAVAWGLAFPEVATGLGMT FT TAAAAQYSALRPFSHPGAYILLTALLTFVVFHRRGYFRKWAEQHGEPPARIVPELLQGA FT VPASIPIIAFLVMASIMKHSGQNLTLAMGIAAVAPAYVFAFLSNAIGILGAFMTSSSTS FT SQVIFSDVQMRLAQAKGLPVSTILAAQSAGGAIGNAIAPANVVMGASTAGIAGQEGEIL FT RKTLPWTVLAFVLTGVATVLLALFMQ" FT misc_feature 954122..954274 FT /note="Signal peptide predicted for BPP0883 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.942) with cleavage site FT probability 0.346 between residues 51 and 52" FT misc_feature join(954137..954196,954233..954301,954311..954379, FT 954437..954490,954503..954571,954584..954652, FT 954680..954748,954767..954835,954995..955063, FT 955088..955156,955184..955237,955295..955363, FT 955406..955474,955583..955651,955679..955747) FT /note="15 probable transmembrane helices predicted for FT BPP0883 by TMHMM2.0 at aa 6-25, 38-60, 64-86, 106-123, FT 128-150, 155-177, 187-209, 216-238, 292-314, 323-345, FT 355-372, 392-414, 429-451, 488-510 and 520-542" FT misc_feature 954143..955735 FT /note="HMMPfam hit to PF02652, L-lactate permease, score FT 2.8e-24" FT CDS 955765..955962 FT /transl_table=11 FT /locus_tag="BPP0884" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE40292.1" FT /translation="MIKRFLQNRMSYLGLSFVLFIAALPLISIGAAGPSRGLFWLGFVS FT MGVAAAIPPVQRLLYPPKAS" FT misc_feature 955765..955914 FT /note="Signal peptide predicted for BPP0884 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.479 between residues 50 and 51" FT misc_feature join(955798..955866,955876..955944) FT /note="2 probable transmembrane helices predicted for FT BPP0884 by TMHMM2.0 at aa 17-39 and 43-65" FT CDS 956006..957667 FT /transl_table=11 FT /gene="ggt" FT /locus_tag="BPP0885" FT /product="gamma-glutamyltranspeptidase precursor" FT /EC_number="2.3.2.2" FT /note="Similar to Escherichia coli FT gamma-glutamyltranspeptidase precursor Ggt or B3447 FT SWALL:GGT_ECOLI (SWALL:P18956) (580 aa) fasta scores: E(): FT 1.6e-47, 31.47% id in 556 aa, and to Salmonella typhi FT gamma-glutamyltranspeptidase Ggt or sty4260 SWALL:Q8Z242 FT (EMBL:AL627281) (580 aa) fasta scores: E(): 1.1e-48, 32.19% FT id in 556 aa" FT /protein_id="CAE40293.1" FT /translation="MIHANGPRTGRPPALGRRGMVSSPHYLASGSGLEVLRRGGSAVDA FT AIATNATLCVVYPHMAGLGGDAFWLIAAGAAQGVQALQACGPAGALADMDFYRGKGHAE FT AIPARGALAALTVPGAVDGWRLAHERYGKLPWESLFADAIEYARHGAPVSRSLADWLAA FT DAAILAADPGMAGIYLPEGKPQREGSYLVQADLARTLETLARLGPREGFYEGEVAREIC FT RYLEAAGGPLRAADFERYRAEWVQPISGTYRGYEVFQMPPPTQGFAALQILKLLEQCDV FT AAWGAESAEYYHHVVEAIKIAFADRDEWLSDPAYVDMPLATLLSSEYCRQRHALIRSES FT ALALDRIEAGIKFGGAASRKSPDGDTVYFCVADADGLVVSTIQSIYHDFGAAVVGGNTG FT VIMQNRGSFFSLDADHPNCLQPGKHTFHTLVPAMLMKDGQPVLAYGTMGGEGQPQTQAA FT LLTRMVDFGYDVQQAIEAPRWLMGRTWGMSSRDLWLEARIADETLRELRLRGHPVKTVP FT NWDGTLGHAQAIRIDPVTRAFEGGADPRGDGAALGF" FT misc_feature 956102..957652 FT /note="HMMPfam hit to PF01019, FT Gamma-glutamyltranspeptidase, score 8.6e-163" FT CDS 957686..958147 FT /transl_table=11 FT /locus_tag="BPP0886" FT /product="putative universal stress protein" FT /note="Similar to Brucella melitensis universal stress FT protein family Bmei0102 SWALL:Q8YJI1 (EMBL:AE009453) (149 FT aa) fasta scores: E(): 5.8e-12, 43.04% id in 151 aa, and to FT Ralstonia solanacearum hypothetical protein Rsp1159 or FT Rs05426 SWALL:Q8XQR2 (EMBL:AL646083) (146 aa) fasta scores: FT E(): 6.5e-11, 37.9% id in 153 aa" FT /protein_id="CAE40294.1" FT /translation="MFKKILIPTDGSSPATQAAHAGIDFAKSIGAEVVVVSVAQPFAAA FT FAYDGLGSGYAFSEEDIDKSMLEQAEAYVQPIAERAREAGLRVDGRAVSHINVAQGIVQ FT AATDSGCDLIFIGSHGRSGLSRLLLGSVTAKVLPLASMAVLVHRAKEEQ" FT misc_feature 957686..957748 FT /note="Signal peptide predicted for BPP0886 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.614) with cleavage site FT probability 0.554 between residues 21 and 22" FT misc_feature 957686..958129 FT /note="HMMPfam hit to PF00582, Universal stress protein FT family, score 5.4e-11" FT CDS complement(958165..958638) FT /transl_table=11 FT /locus_tag="BPP0887" FT /product="putative GnaT-family acetyltransferase" FT /note="Similar to Caulobacter crescentus acetyltransferase, FT GnaT family Cc0191 SWALL:Q9ABN5 (EMBL:AE005693) (179 aa) FT fasta scores: E(): 2.2e-11, 35.82% id in 134 aa, and to FT Bacillus halodurans hypothetical protein Bh0478 FT SWALL:Q9KFK1 (EMBL:AP001508) (157 aa) fasta scores: E(): FT 4.8e-12, 31.61% id in 155 aa" FT /protein_id="CAE40295.1" FT /translation="MAIRTARQDDLEWIVAAHAQVYAAEFGFDRRFRDGIAAKMAALRR FT RPGALDRIWVGWVEDERAASIAVSDRPGGIAFLNFVLVLPRYRGRGAGRAMMETALAHA FT RAHGSREVQLETYSCLVDARALYHRLGFRATMVAPGQHAYGQTFDQEFWALAL" FT misc_feature complement(958240..958479) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 1.1e-18" FT CDS complement(958749..960596) FT /transl_table=11 FT /locus_tag="BPP0888" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable acyl-CoA FT dehydrogenase Pa3593 SWALL:Q9HY33 (EMBL:AE004779) (575 aa) FT fasta scores: E(): 8.5e-102, 48.16% id in 571 aa, and to FT Mycobacterium tuberculosis putative acyl CoA dehydrogenase FT FadE35 or Rv3797 or Mtv026.02 or Mt3904 SWALL:O53577 FT (EMBL:AL022076) (593 aa) fasta scores: E(): 4.7e-43, 33.78% FT id in 586 aa" FT /protein_id="CAE40296.1" FT /translation="MAYQPDYGSFARKRPARSTQSSEKLAPDCAGLDFFAIDPSLQQLL FT SVYVPGAELEYFRPHFERMGKLAGGRLNELAMVADKHGPVLHARSRWGEDEDWIEYHPA FT YQEMEHIAFEQFQFHAMTHRPGAMGYAGTLSPITKYVFQYLFVQSEFGQMCPISVTDTS FT IHLIRKFGSEALQARLLPRMLADNLQDLWKGTQFMTEKSGGSDVGQVETTARQIDGQWH FT LHGEKWFSSHVDADIALILARPEGAPAGTRGLALFAMPRYREDGSRNSYRIVRLKDKLG FT TRSMASGELRIDGAFAYLVGDPTQDIKQMMEQVNLSRLSHAVRAAAMMRRCLNESMQAA FT RHRQAFGRQVVDYPLMQRQLLKLLVPTEAALTMTMATADAMAKAYGGDAQCKAALRLLT FT PLLKLRACRDNVTVATGAMEVRGGNGYIEDFVNARLVRDAHIGVLWEGTSNINALDAIE FT RAVRKDQAHIALRALLLEKLRAVRAQAPVIAGPLAEAVAAACQLAEGVAGDPRHESEVR FT RAASALYHASAAVLMAWEATQEGVDGRRLLLADAMLRTRLLPRDPLAAPSAAMLARDLA FT MLQGEKLSLRQAADLLAPHDAGVAPARQARADAAAPAQA" FT misc_feature complement(959214..959687) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.8e-32" FT misc_feature complement(959283..959342) FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT misc_feature complement(959697..960005) FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 9.1e-07" FT CDS complement(960630..961856) FT /transl_table=11 FT /locus_tag="BPP0889" FT /product="conserved hypothetical protein" FT /note="Similar to Acinetobacter sp. NCIMB9871 L-carnitine FT dehydrogenase-like protein Orf17 SWALL:Q93RL7 FT (EMBL:AB026669) (405 aa) fasta scores: E(): 9.9e-83, 52.22% FT id in 404 aa, and to Brucella melitensis FT alpha-methylacyl-CoA racemase Bmeii1019 SWALL:Q8YB81 FT (EMBL:AE009734) (415 aa) fasta scores: E(): 1.5e-85, 52.85% FT id in 403 aa" FT /protein_id="CAE40297.1" FT /translation="MPNKPLQKYRVLDLTRVLAGPWCTQNLADLGAEVIKVERPGVGDE FT TRGWGPPWIPAGAASKRRDSAYFGSANRGKKSITIDFTTAQGQALVRQLAADCDVLVEN FT YKTGTLARYGLGYEDLKAVNPGLVYCSVTGFGHTDPYRHKPGYDFVFQAMSGLMSITGE FT RDDLPGGGPQKVGIAVADITTGMYSTVAVLAALLERESHGRGQHLDMALLDCAMAFNSN FT QAVNYMASGSMPRRYGNAHSNAVPYQVFDTRDGQIVVAVGNDALFAAYCRAAQRPDLCA FT DARFVTVSGRLQNRDELLSQLAVVMAGKTSAQWLAVLDAAGVPCAPINDFEQALADPQV FT KARNIETHIALEDGAVFRTIASPLRFSETPLDHLAGPPMLGQHTADVLRERLGLDEAQQ FT AGLRQAGVI" FT misc_feature complement(960927..960950) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(961044..961625) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 9.8e-75" FT CDS complement(961905..962894) FT /transl_table=11 FT /locus_tag="BPP0890" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 7.1e-38, 40.55% id in 323 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 4.2e-44, 41.12% FT id in 321 aa" FT /protein_id="CAE40298.1" FT /translation="MGLDTTKLAAVLATSLSLCAASAAASPTSADYPRQTVRLIVPYAA FT GGMTDLVARIVGQKLGEGLGQAVVVENKPGASTITGADFVAGARPDGYTLLVATNTTLT FT INPWLYKNLRYDAQKSFTPIALVAKAPSVIVVNPKVPANNIGELVELASARPGSLSYAS FT YGNGSSAHLAGEMLRSRAGIAVLHVPYRGSAPAKTATMSGEVSMTFEPAFTAAPLIKSG FT QLKPIALMGDKRSPALPDVPTVAEVGYPGMDMQAWVGFVAPANMPDGIVARLAAEIRKV FT MADPEVQAKLIGSGAEPVGYYQQDFTAYMRDESARYKTVIEQAGIRAE" FT misc_feature complement(961917..962741) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.8e-106" FT misc_feature complement(962820..962894) FT /note="Signal peptide predicted for BPP0890 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.829 between residues 25 and 26" FT CDS 963035..963928 FT /transl_table=11 FT /locus_tag="BPP0891" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa3594 SWALL:Q9HY32 FT (EMBL:AE004780) (295 aa) fasta scores: E(): 1.8e-47, 46.1% FT id in 295 aa, and to Ralstonia solanacearum probable FT transcription regulator protein Rsp1357 or Rs04822 or FT Rsp1326 or Rs05669 SWALL:Q8XFS3 (EMBL:AL646084) (306 aa) FT fasta scores: E(): 1e-38, 41.39% id in 302 aa" FT /protein_id="CAE40299.1" FT /translation="MELRQLRYFVAVAEALHFGRAARRLSISQPPLSFNIARLEESLGY FT ALLRRSTRAVELTAAGKVFYQEACRILALADQARALGQRAARGEVGSLRVGFVGASLLS FT PMARVLRQFEQDRPGLMLSVHELNSFEQIHALQREQIDFGIMHPRSIPDGILARLLHRE FT PFVCALPDSHPLAARQRIRLQALKDESFVLFPRHFSPEYHDQIIVLCMDAGFTPHIRYE FT VRANATVVALVAAGFGVAIVPRSVSRVAIDGIRFRPLAKAGVESQLLGVWRDDGHDSLI FT QPLLAAMASLLPAARR" FT misc_feature 963041..963220 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3e-25" FT misc_feature 963083..963175 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 963290..963913 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.6e-43" FT CDS 964067..964756 FT /transl_table=11 FT /locus_tag="BPP0892" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE40300.1" FT /translation="MAAPFTKWFCIMQDVDVSPDLDRGLGIFRRVSFYELMEIMTFSRL FT PFAPAARRRGAGVVDLSWRFLDGAGCVRAAPRKRGEPWICLVSTVDSLAASLFTQADMA FT VRMEAAGRAASASGDAAAAFQAGPGALAVVLSAAGEGGEAQRRGHGVNLLVDLGTLLSG FT VLVSPAAPASFVGLVGEIVQRNTGAWVSRGPLRKADAGAREPALMPARPPARGRRPAVG FT RTPTAGP" FT CDS complement(964740..965723) FT /transl_table=11 FT /locus_tag="BPP0893" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1.7e-28, 31.05% id in 322 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 ra1058 or sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 1.9e-31, 34.96% FT id in 326 aa" FT /protein_id="CAE40301.1" FT /translation="MFKLNLSRCAPMALAIVLAGGAMTARAQDHAPVRIVIGFSAGGAL FT DNMSRAIAEQLKAELGQSVIVENKPGAGTQIALQTVKRSPPDGNTILISPAPPFVLFPL FT TYDRLQYDADKDLVPVAHLADTPLVASTSSNSPYSTMHEYLAWVRKNPDSVGVGMVSLG FT GALHFGLLKLNQHSGLNLMPIAYKGAPAMLTDEIGGVLPIGMDTVAATSELARAGKIKY FT LGVTGTERSALLPDVPTLGESGAPGFEQSSGWYAAFVSAGTPKAVTDKLERALIKIVKD FT PAFSARVAQVGLVSTGKPGAELAAMIQAQRQAWQPVVKASGFKALQ" FT misc_feature complement(964755..965582) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.7e-64" FT misc_feature complement(965643..965723) FT /note="Signal peptide predicted for BPP0893 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.733 between residues 27 and 28" FT CDS complement(965804..966544) FT /transl_table=11 FT /locus_tag="BPP0894" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3775 SWALL:Q9HXM0 (EMBL:AE004796) (260 aa) fasta FT scores: E(): 2.6e-15, 36.48% id in 233 aa, and to Rhizobium FT meliloti hypothetical protein Rb0277 or Smb20287 FT SWALL:Q92WQ2 (EMBL:AL603642) (235 aa) fasta scores: E(): FT 4.4e-06, 28.93% id in 235 aa" FT /protein_id="CAE40302.1" FT /translation="MIDLLFPACAVLLGYVVLGITGFGSALVVVPLLAWRWPLPEVVAL FT TLLLDVMASLLLGGLNLRQVDFAELRRLLPGMVAGALAGLWLSRSLDASWPLLVLGLYV FT AAVGAQALRPGPARPRPPAAAPWALAAGGAIGVVEMLFGTAGPLVVAWLSRRLPDVHAL FT RASTPVVITVSACSVLLAMGWAGRLSQPELWTRWLALVGVAAGGVLLGHRWARHVSPAA FT LRKLICGLLVVSGLTLVVHTLQQG" FT misc_feature complement(join(965816..965866,965906..965962, FT 965993..966058,966098..966163,966209..966265, FT 966359..966424,966440..966505)) FT /note="7 probable transmembrane helices predicted for FT BPP0894 by TMHMM2.0 at aa 13-35, 40-62, 93-112, 127-149, FT 162-184, 194-213 and 226-243" FT CDS complement(966560..968089) FT /transl_table=11 FT /locus_tag="BPP0895" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsp1573 or Rs02129 SWALL:Q8XPR5 (EMBL:AL646085) FT (494 aa) fasta scores: E(): 1.2e-45, 34.28% id in 493 aa, FT and to Rhizobium loti hypothetical protein Mlr6294 FT SWALL:Q989S9 (EMBL:AP003008) (525 aa) fasta scores: E(): FT 9.8e-42, 33.46% id in 520 aa" FT /protein_id="CAE40303.1" FT /translation="MKFVIALIRHETNTFSPVGTELSDFRRGTSGDGPAHGEAARLACE FT GTNNAAAAYLDMAREMGAEVDFSVYASAVPSGLVSRAAFEALCDAVLDSARQGCDAILL FT DLHGAMVVDGYPDAEGELLRRLRACTPAGLPIGVALDFHANFSSELIRHATAIAGYCTY FT PHVDVYETGARVGRTIRALLEGRSQPVVLWRRLPMLTHMLRQTPALQPMKDIMARAMQA FT ERDGEVCNASVFGGFPLANIACAGLSVVIVAERARLEAAQRLLDELCGLAWSRRADFVF FT PSEPVADSISHARTLEQGPVILVDHGDNCGAGGTTDVMDVLEEVLRQGLQDVVAGPFCD FT PAAVAALFEQGVDAEVTLDVGGKTDMPALGLAGRPLRLTGVVERLTDGEYTVTGPMFTG FT VRLSLGRTAVLRVGTVRVFISERPQEPYDTGVFTHAGVDPAQSRYVLLKSRQHFRAGFE FT PFARHIVLVGGPGVCSSDYGIFPFRHLSRPIYPLDADATLEHAQSWIAGDA" FT CDS complement(968102..969100) FT /transl_table=11 FT /locus_tag="BPP0896" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein orfJ FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1.7e-25, 29.39% id in 330 aa, and to Comamonas testosteroni FT Orf4 protein SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta FT scores: E(): 5.1e-25, 32.61% id in 325 aa" FT /protein_id="CAE40304.1" FT /translation="MEMRRIRRRVVGLAIASCLAPLLGLGPALAQADWPARTMKVVVPY FT PAGGTADAMGRMVAGKLAKAFPQASVIVENISGGATVPGAMAVLRDPADGHTLFMASDN FT TLNINHWLLKDARYDGDRDFTPVTVLNTYPHWLIVNPQGPYDSFDALVQAIRANPGKIS FT ISVNTIGGAAYLALDNWRRRNGLEFEIVPYRGSPPAVADLIGGHTDTHVDVVGSSIAHA FT RGARVLPVAILQDTPLAEFPKAVAQDGKDPKALAVQSNLSVVVRAGTPPALLERLYAAL FT QTGVKDKDFAGMLDMLSLDAVMLPPAQARTFLAQETRRYGALVEQSGLEKQ" FT misc_feature complement(968114..968941) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 8e-36" FT misc_feature complement(969011..969100) FT /note="Signal peptide predicted for BPP0896 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.607 between residues 30 and 31" FT CDS 969210..970127 FT /transl_table=11 FT /locus_tag="BPP0897" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Ralstonia solanacearum probable FT transcription regulator protein Rsp1357 or Rs04822 or FT rsp1326 or rs05669 SWALL:Q8XFS3 (EMBL:AL646084) (306 aa) FT fasta scores: E(): 3.6e-23, 33.44% id in 308 aa, and to FT Clostridium acetobutylicum transcriptional regulator, LysR FT family Cac2394 SWALL:Q97GH3 (EMBL:AE007739) (286 aa) fasta FT scores: E(): 3.1e-22, 29.41% id in 289 aa" FT /protein_id="CAE40305.1" FT /translation="MDEHRLKCFVAVYEEGSVSAAAVRLHMTQPPLSILLRKLEDELRV FT GLFDRGGRRLVPTAAGELFYLRAKAMLANLQTIRRELREVEQGARGLVHIGCSTAASLF FT IVPRVMEDLAAEGLEIVLHVHEGEIGYMLQQLRERSLDLTICRSQHMAPDLESQVIMEE FT PLFVALPPGHPLAGRARVRLADLRDERFLLHRSPLGTGISDMVLRACRNAGFAPNVVYW FT GGETLPMLLMARRGLGIAFAPQSFAQLGLQGLAALVPVADAEFRTHLNMVWPRQQALSP FT IASWVRELIMKRFGPAGGEPRAAS" FT misc_feature 969261..969395 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.4e-08" FT misc_feature 969465..970094 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 7.6e-44" FT misc_feature 969471..969521 FT /note="PS00606 Beta-ketoacyl synthases active site." FT CDS complement(970124..971287) FT /transl_table=11 FT /locus_tag="BPP0898" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens Ggdef family FT protein Atu1257 or Agr_c_2322 SWALL:Q8UFY7 (EMBL:AE009087) FT (415 aa) fasta scores: E(): 2.4e-21, 31.62% id in 389 aa, FT and to Rhizobium loti hypothetical protein Mll4271 FT SWALL:Q98EF2 (EMBL:AP003003) (398 aa) fasta scores: E(): FT 6.1e-17, 28.75% id in 400 aa" FT /protein_id="CAE40306.1" FT /translation="MNVDLTTLYLLATGTLIASAGMMLWEYRANPGRGRALGLFAAGFA FT TLALGCVAALYRRDLPGVWGSALANLIMIGAYLLVLQGVGALRGSRHGAFGAAVLAVMA FT AVWALSDPAEMDATWSHVSAAPIALINAMTALSMWRNPAMRPFPARRMVIAMTGLHALI FT YAGRALVLPWLVREHGLPVQALAGKFTIYEGVLYSVILPMALLRLLREEIHGELLRESQ FT TDYLTRLGNRRWFFEEGARLLKHRPAGSSPLAVLAFDLDQFKAINDMYGHQTGDEVLQA FT FARAAQDVIGPRAVLARIGGEEFAALLRGDDALKAQALGEAVAGRFTQAVAGRLAHISL FT PVTVSIGLARIEPGDATLAASLMAADRAMYRAKSLGGNRLEVAAGAA" FT misc_feature complement(970151..970639) FT /note="HMMPfam hit to PF00990, GGDEF domain, score 3.9e-42" FT misc_feature complement(join(970661..970717,970763..970828, FT 970865..970930,970961..971011,971033..971089, FT 971120..971185,971207..971272)) FT /note="7 probable transmembrane helices predicted for FT BPP0898 by TMHMM2.0 at aa 46-68, 75-97, 107-126, 133-150, FT 160-182, 194-216 and 231-250" FT CDS complement(971429..972871) FT /transl_table=11 FT /locus_tag="BPP0899" FT /product="probable pyridine nucleotide-disulphide FT oxidoreductase" FT /note="Similar to Agrobacterium tumefaciens opine oxidase FT subunit A OoxA SWALL:OOXA_AGRT4 (SWALL:Q59160) (503 aa) FT fasta scores: E(): 1.1e-73, 49.05% id in 475 aa, and to FT Rhizobium meliloti opine oxidase subunit A OoxA FT SWALL:OOA2_RHIME (SWALL:P72300) (526 aa) fasta scores: E(): FT 2.5e-71, 46.48% id in 469 aa" FT /protein_id="CAE40307.1" FT /translation="MTRRCELLVVGAGPAGMAAATQSAALGVDTLLLDEQATPGGQIYR FT AITTTALTRPDILGPDYWHGASLLEPLRASGAAYLSGATVWAVSRGAEAGDGGAFEVAY FT SVGGQADILRARHILLATGALERPFPIPGWTLPGVVTAGAAQILLKTAAIVPGEHAVLA FT GGGPLLYLLAWQYLNAGVRIERLLETTAPGGLARALPHALDFLRSPYLAKGLKLMRAVR FT AHVPITRGVRDLRAQGRERLESLSYRAGGRTHDMPARHLMLHQGVVPNLNLSRALGVDH FT QWNPTQACWQPRVDDWGATSVAGIGIAGDGADIGGAIAAEHRGRLAALQAAVALGRIDD FT ARRDREARAPRRALARAMRGRAFFDVLYRPADAYRRPGDDTIVCRCEEITAGQIRATVR FT LGCSGPNQMKAFLRCGMGPCQGRLCGLTVSELIAHERGVPLPEVGYYRLRFPTKPVTLG FT ELASLPQTEASRQAVVRLKKTA" FT misc_feature complement(971909..972856) FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, score 5.7e-06" FT misc_feature complement(972797..972871) FT /note="Signal peptide predicted for BPP0899 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.332 between residues 25 and 26" FT CDS complement(972868..973176) FT /transl_table=11 FT /locus_tag="BPP0900" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical FT protein Sco6290 or Scbac8d1.03 SWALL:Q93RY2 (EMBL:AL591084) FT (84 aa) fasta scores: E(): 1.1e-10, 53.42% id in 73 aa, and FT to Agrobacterium tumefaciens hypothetical protein Tiorf192 FT or Atu6020 or Agr_pti_bx141 SWALL:Q9R690 (EMBL:AB016260) FT (97 aa) fasta scores: E(): 2.3e-08, 36.66% id in 90 aa" FT /protein_id="CAE40308.1" FT /translation="MFKRLEAAPGLPARPVVHIDVNGEAVSCRAGESVAAALLAAGHDA FT CRATMVGGVPRGPYCMMGVCYDCLVTIDGQANRQACMTPVRDGMRVERQQRAREVLP" FT CDS complement(973160..974314) FT /transl_table=11 FT /locus_tag="BPP0901" FT /product="probable FAD dependent oxidoreductase" FT /note="Similar to Agrobacterium tumefaciens opine oxidase FT subunit B OoxB SWALL:OOXB_AGRT4 (SWALL:Q59159) (371 aa) FT fasta scores: E(): 1.1e-54, 45.79% id in 369 aa, and to FT Rhizobium meliloti opine oxidase subunit B OoxB or Ra1199 FT or Sma2223 SWALL:OOB1_RHIME (SWALL:Q92XP5) (368 aa) fasta FT scores: E(): 4.6e-56, 46.44% id in 366 aa" FT /protein_id="CAE40309.1" FT /translation="MAISAAADAAPRFSGHDVIVVGGGLVGSALAYGLRRRLDRVAVLD FT EGDLAYRASRGNFGLIWVQSKGMGMPRYGVWTMASQRAWPDLAARLLEESGIDVHLEQQ FT GGLHVLLSDEEVQARIDFMTRLLAQPGMSDYAWKLLDRHELADLVPGIGPEVRGASWTP FT VDGIANPLKLLRALHTTFERNGVDYLPRCPAQSISRHADGMFVVDTPRGRLQAPRLVLA FT CGLGNQAMGAQVGLDIPVRPQRGQIIVLERTHRVLRTPISTLRQMDEGSWLIGDSQEEA FT GYADNEVSLPILGTLADRAVRTLPALREVNVVRSWSALRVMSPDGFPIYAQSATCPGAF FT VATCHSGVTLAGAHALLLAPMIADGALAGDMAPFSARRFHVQEA" FT misc_feature complement(973214..974269) FT /note="HMMPfam hit to PF01266, FAD dependent FT oxidoreductase, score 0.0049" FT CDS complement(974342..975391) FT /transl_table=11 FT /locus_tag="BPP0902" FT /product="putative dipeptidase" FT /note="Similar to Ralstonia solanacearum putative FT dipeptidase protein Rsp0056 or Rs02031 SWALL:Q8XTQ0 FT (EMBL:AL646076) (323 aa) fasta scores: E(): 2.2e-29, 33.33% FT id in 306 aa, and to Rhizobium loti hypothetical protein FT Mlr6286 SWALL:Q989T6 (EMBL:AP003008) (338 aa) fasta scores: FT E(): 1e-26, 30.59% id in 317 aa" FT /protein_id="CAE40310.1" FT /translation="MSKAFGLELSETEQERVARIRKEFVYWNLCDSTTRECGDETYLEQ FT VKASNVTAINHTVCYTVDFAEGVKNVAHWTRLYDARPDVGFIAKTYADIERTRKERRTA FT IFMGFQDVTALEDDMDRMEVFYNLGIRFVQPTYQDRNLFGDGCGERFQSGLSKLGIKFV FT EKLDELGIVIDTSHVGIGTTIDCANMSQRPIMATHTAARAIVDTPRNKTDDEIKAIAAK FT GGVIGIAGKSGFLKKDGLETGSTINDMIDHVVYIAGLVGIDHVGIGTDVGDLRKYSPDR FT MAEFHARHPEVAIIGPGLRTDLMHPKDVGPGTLHYVIAYLVKRDFKDDEIRKVLGENAN FT RVVKAVFRD" FT misc_feature complement(974348..975391) FT /note="HMMPfam hit to PF01244, Renal dipeptidase, score FT 0.0025" FT CDS complement(975450..976568) FT /transl_table=11 FT /locus_tag="BPP0903" FT /product="probable ABC transporter ATP-binding protein" FT /note="Similar to Rhizobium meliloti putative FT spermidineputrescine ABC transporter ATP-binding protein FT PotA or Rb0780 or Smb21276 SWALL:Q92VC8 (EMBL:AL603644) FT (342 aa) fasta scores: E(): 2.5e-47, 57.98% id in 238 aa, FT and to Agrobacterium tumefaciens ABC transporter, FT nucleotide binding/ATPase protein Atu4424 or Agr_l_887 FT SWALL:AAL45218 (EMBL:AE009371) (341 aa) fasta scores: E(): FT 6.4e-45, 55.46% id in 238 aa" FT /protein_id="CAE40311.1" FT /translation="MKARQDYSIELRDLTLAYGERDIIRGLNLDVRRGEILSLLGPSGC FT GKTTTLHAIAGLIVPRKGSVVIDGVDQTDVAINRRNVGMVFQGYALFPHMTVFDNVSYG FT LRIKSVAKAEVRERTMRALALVGMEQYAQRKPRQLSGGQQQRVAIARTMVMEPRVLLLD FT EPLSNLDAKLRHEIRGDLKRILRELSITSVFVTHDQEEAMFLSDRIVLMKDGAIAQLSS FT PREIYNNPANSFAAAFLGNTNFIAATLLSQTPDHTGCEVSATETGQVLKGRSALRFDAQ FT QPGFLSVKHDRVSYTLSHEEFLALRDRPGISTMQCRVADVHFLGHVTKVECQAGDQTMT FT VLRSSACVPPDLAAGAAIYLYWPEEESLVLSL" FT misc_feature complement(975924..976469) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.6e-63" FT misc_feature complement(976110..976154) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(976425..976448) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(976565..977338) FT /transl_table=11 FT /locus_tag="BPP0904" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Rhizobium meliloti putative ABC FT transporter, permease protein Ra0435 or Sma0802 FT SWALL:Q92ZM0 (EMBL:AE007234) (266 aa) fasta scores: E(): FT 1.2e-28, 34.81% id in 247 aa, and to Agrobacterium FT rhizogenes Riorf34 protein SWALL:Q9F5F8 (EMBL:AP002086) FT (266 aa) fasta scores: E(): 4.6e-32, 36.29% id in 248 aa" FT /protein_id="CAE40312.1" FT /translation="MKKALSALYIVFMCSPLLIVIGAAFEPQEILRFPPHGVSLTWFGR FT VLQDPAFLDAATNSLIVGVLATVLSVALGLLSAYALARGSGRYRETILGLLLSPLVIPE FT LVIGLALLQMLTLMNLATDLLTLVLAHTVICLPYTVRLLYNGVNAINESLENASLLLGA FT SRGGTIIRVTLPLMKNSIVAAALFAFLTSFDNTVISLFLVDASTMTLPITIYNYVEFSL FT DPAIAALSTILILLSCVVVSIISRVSGLDNMGPRK" FT misc_feature complement(join(976598..976663,976730..976795, FT 976907..976963,976994..977059,977096..977161, FT 977258..977323)) FT /note="6 probable transmembrane helices predicted for FT BPP0904 by TMHMM2.0 at aa 5-27, 59-81, 93-115, 125-144, FT 181-203 and 225-247" FT misc_feature complement(976682..976903) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 4.2e-11" FT misc_feature complement(977267..977338) FT /note="Signal peptide predicted for BPP0904 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.878) with cleavage site FT probability 0.324 between residues 24 and 25" FT CDS complement(977335..978201) FT /transl_table=11 FT /locus_tag="BPP0905" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Agrobacterium tumefaciens AttA2 or FT Atu5127 SWALL:AAL45817 (EMBL:U59485) (300 aa) fasta scores: FT E(): 6.5e-28, 35.07% id in 268 aa, and to Rhizobium FT meliloti AttA2-like ABC transporter, permease protein FT Ra0515 or Sma0952 SWALL:Q92ZH0 (EMBL:AE007242) (296 aa) FT fasta scores: E(): 5.6e-28, 34.63% id in 257 aa" FT /protein_id="CAE40313.1" FT /translation="MKQRVLFLSPALLFITLLLFVPFLYLLYLSFMDQDYLYGGPGLPG FT FGNYVEAFSNPIYWESILNTFRIGATVTVATLVIGFPIAYIISVSGKALATTLTVVTVL FT PLFVSVVVRGFGWIIVFGREGPLNALLLWTGLVSQPIQVLYTESAVIIALTHLLLPFMI FT LPVLASLRAIDKSIIDAAMVLGSRRRDVFLHVIIPLCAPGFVVGSLLVFLHVLATFVLP FT AMLGSINIKMIATLIYQQVMIVGNVPAGAALAVILFVFTMLIFGLIGALRNRLNFDSSP FT VEAGQAR" FT misc_feature complement(join(977389..977454,977491..977547, FT 977563..977628,977692..977757,977836..977901, FT 977941..978006,978115..978180)) FT /note="7 probable transmembrane helices predicted for FT BPP0905 by TMHMM2.0 at aa 7-29, 65-87, 100-122, 148-170, FT 191-213, 218-237 and 249-271" FT misc_feature complement(977476..977697) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 3.1e-08" FT CDS complement(978296..979357) FT /transl_table=11 FT /locus_tag="BPP0906" FT /product="putative extracellular solute-binding protein" FT /note="Similar to Agrobacterium tumefaciens ABC FT transporter, substrate binding protein Atu4421 or Agr_l_890 FT SWALL:AAL45215 (EMBL:AE009371) (340 aa) fasta scores: E(): FT 4.3e-16, 25.29% id in 344 aa, and to Rhizobium meliloti FT putative spermidineputrescine ABC transporter periplasmic FT solute-binding protein PotD or Rb0777 or Smb21273 FT SWALL:Q926H0 (EMBL:AL603644) (340 aa) fasta scores: E(): FT 3.8e-17, 26.26% id in 335 aa" FT /protein_id="CAE40314.1" FT /translation="MDTATRRTFLKRSAGIGLAAIGGSYLRIGHTADDHIYVTSSGGSF FT LENVRKHMAEPFEKQSGVKVTLVPGTNPAHALKILSSRGTPPYDVAAFGGNDMYRLIRA FT KKLAQVDEKSVPSLADVPEKFKADWEGCGSLYDYSSVGIAYRPDKIQGGVKSWKEFVER FT TVAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGSGYGDIEASIATLERMKPHIFKFFTA FT FNDPVVLLTSGEGAIGPGWDGRTFIAEDSTKGMVKWVDPTEGAVSSGPVMAVVKGGKED FT LAKAFMNYALGEEAQKAFCEAMYYGAVNRKVQYSEKLKHRLPSIDSVQLVDTALLIKNM FT SALLDLWNKRIAS" FT misc_feature complement(978323..979234) FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein, score 2.6e-08" FT CDS complement(979633..980517) FT /transl_table=11 FT /locus_tag="BPP0907" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT activator protein LysR or B2839 SWALL:LYSR_ECOLI FT (SWALL:P03030) (311 aa) fasta scores: E(): 6.6e-37, 38.56% FT id in 293 aa, and to Salmonella typhimurium and Salmonella FT typhi positive transcriptional regulator LysR or Stm3014 or FT Sty3158 SWALL:Q8XGD5 (EMBL:AE008838) (311 aa) fasta scores: FT E(): 5.9e-35, 37.19% id in 285 aa" FT /protein_id="CAE40315.1" FT /translation="MNVRALEAFRAVMRTGSMTGAARIIHTTQPNISRLVSMLEAELDL FT KLFIREGNKLHVTDEGAAFFKEVEQHYAGLRALKDAARTIKQLGGGRLHIAVAPALSHG FT FLASAVTAFTQRHPRVTLSIRTCNSYMVEQLVNSQLCDLGLAAFIGHVTEPGLETERIA FT SIRGVCLLPQAHRLASRDVIHARDLEGEPFVSIARQNGSREHVDSLFEKAKVTRKIEVE FT AENASTICHLVAQGLGVSVLNAVIAEDFRCHGLVVREFRPAIHFPITLLRSSHRPRSLL FT VAAFIDCLGAVLN" FT misc_feature complement(979639..980262) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.3e-47" FT misc_feature complement(980332..980511) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.2e-20" FT misc_feature complement(980377..980469) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(980746..980751) FT /note="Duplication due to IS1002 insertion" FT CDS complement(980747..981697) FT /transl_table=11 FT /locus_tag="BPP0908" FT /product="transposase for IS1002" FT /note="transposase for IS1002 element" FT /protein_id="CAE40316.1" FT /translation="MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKW FT LARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVA FT RYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNR FT GIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSG FT YVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQ FT PFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDT" FT repeat_region 980747..980775 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1002 element" FT repeat_region complement(980747..981787) FT /note="IS1002 insertion sequence" FT misc_feature complement(980780..981316) FT /note="HMMPfam hit to PF00665, Integrase core domain, score FT 6.8e-30" FT repeat_region complement(981759..981787) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1002 element" FT misc_feature complement(981783..981788) FT /note="Duplication due to IS1002 insertion" FT CDS complement(981784..982557) FT /transl_table=11 FT /locus_tag="BPP0909" FT /product="putative enoyl-CoA hydratase" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydratase Crt or Cac2712 FT SWALL:CRT_CLOAB (SWALL:P52046) (261 aa) fasta scores: E(): FT 3.5e-17, 33.95% id in 215 aa, and to Caulobacter crescentus FT enoyl-CoA hydratase/isomerase family protein Cc1723 FT SWALL:Q9A7K0 (EMBL:AE005846) (256 aa) fasta scores: E(): FT 3.2e-18, 36.93% id in 222 aa" FT /protein_id="CAE40317.1" FT /translation="MNQAVSIRRDGATAIVTLDRKQNRNALSQAVMAELTEVAEGLRGE FT RDISTVILAGTQEIFSAGVDLKDPARWEIDAGDIEGIRMASERGARMCRAWESIPQLTI FT AAVEGLNVGGGIALTLCCDWRIHSETARLRLPEAQIGIPLSWQTVPRLVNLVGPAKAKQ FT LILRGKELDSQTALELGLVDLVVPPGTALDAALEVARDVNRNPRLVITMTKQSINSYAN FT ALAYLSTHMDVDQAVLCGMSAVAVQARRQFSAPAA" FT misc_feature complement(981997..982518) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 5.9e-27" FT CDS complement(982602..984221) FT /transl_table=11 FT /locus_tag="BPP0910" FT /product="putative long-chain-fatty-acid-CoA ligase" FT /note="Similar to Streptomyces coelicolor putative FT long-chain-fatty-acid-CoA ligase Sco6196 or Sc2g5.17 FT SWALL:Q9Z5A6 (EMBL:AL035478) (541 aa) fasta scores: E(): FT 3.8e-39, 33.2% id in 521 aa, and to Mycobacterium FT tuberculosis hypothetical 59.7 kDa protein FadD35 or FT Rv2505c or Mtcy07a7.11c or Mt2580 SWALL:O06168 FT (EMBL:Z95556) (547 aa) fasta scores: E(): 1.4e-38, 30.92% FT id in 540 aa" FT /protein_id="CAE40318.1" FT /translation="MDIRDIKPAGPTWLDVVGRHAAATPERTALGLDGHTLSYSRLLAV FT VDEAAALLARLGVRRGDRVALLSPPRPEAIITFLACTRLGAVWLALNPKYKAPEIHYIL FT DHARPTLLMSVREFDNTEYVQTVEQVVAGIGRDSGHAIATVFFDREQPTHDSLFAALRG FT AAQERGGDAALPGPAAAQPGQACMLVYTSGSTGRPKGVLLAEFASLFRATVQKDYFATS FT RPPCILNFSPINHVGGMQFRSLVQLAAGGTIHFQERFQPGETLALIRRHRINMLMLGPT FT MLNMLMAHPDFDVDIFQQLEWYISAGAALPVPALKLLAANCPRVGSVYGSTESCSTVTY FT ASLDDSFDAVAYSIGRPIPGDEMRVADAQGEPAGPGIEGELQICRRYCMVGYLNDPAAT FT RAAFTEDGWYRTGDLATLLPDGSFKLAGRIKEMFKSGGYNVYPREVELALESHPEVKMA FT AVVAVDDPMFQQVGHAYVLVEPRTALTAGQLTAWSKERLANYKVPKRIELRTALPMLAI FT GKVDKVALQAAAARDAAVAAAG" FT misc_feature complement(982842..984110) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 1.2e-110" FT misc_feature complement(983625..983660) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(984223..985206) FT /transl_table=11 FT /locus_tag="BPP0911" FT /product="putative exported protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 35.6 FT kDa protein in gbd 5'region precursor SWALL:YGB7_ALCEU FT (SWALL:Q44018) (327 aa) fasta scores: E(): 1.4e-62, 53.53% FT id in 325 aa, and to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 5.8e-33, 38.06% id in 331 aa" FT /protein_id="CAE40319.1" FT /translation="MQRRSFIKLGGAATVAAGAAALGLPSAARAADAFPAKPIRVLVGF FT SAGGVTDIVVRALAESASNIFGQPIIVENKLGAGGVMPAYQLQTAAPDGYTVGLIAHSV FT FRLPYIANIKWNPVTDLDYVIRLTGFTWGLVVAADSPIKTFDDYVAYARQNPGKLTYGT FT VGSLTTQHLTMEQISASLGIQLSNIPYKGVAEALPALMGGHIMSVADASSWVPYVTSGK FT MRLLVVWTEKRVPRFPDVPTLREVGIDMVQTSPWGLAAPKGTPQPVIDKLYQAFSQVMG FT EQAIIEKIEQTKSMPMHMTPAQTKAYIDAEAERFRRIIVERKITFN" FT misc_feature complement(984235..985047) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3e-101" FT misc_feature complement(985117..985206) FT /note="Signal peptide predicted for BPP0911 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.936 between residues 30 and 31" FT CDS 985362..986459 FT /transl_table=11 FT /locus_tag="BPP0912" FT /product="putative two-component sensor histidine kinase" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane two component system sensor kinase FT transcription regulator protein Rsc0191 or Rs00623 FT SWALL:Q8Y2Z0 (EMBL:AL646057) (458 aa) fasta scores: E(): FT 4.5e-17, 34.51% id in 368 aa, and to Bacillus halodurans FT two-component sensor histidine kinase involved in FT degradative enzyme DegS or Bh3629 SWALL:Q9K6U6 FT (EMBL:AP001519) (377 aa) fasta scores: E(): 1.1e-13, 27.09% FT id in 358 aa" FT /protein_id="CAE40320.1" FT /translation="MHDFRWPLDQDDANYRLLFEGLIEQSVAGIYLLQNAHLVYVNEAF FT ARMCGVPREKLIGRPLARVAPPQQRESLLQQYERRLTGGDKDATFMVHVQRPDGQPVAI FT EIHGRLIDFRGQPAVIGVGIDATLRLRRQEELQQSRAALSELVSHIESVREAERQRIAM FT ELHDAVGGMLSALKFDMSRLARHIDRTLGGPGQDERRAQLEGVVGECLGLVQDTIATVR FT QISEDLHPSALPHLGLAAAIANHLRQFEARYGIACRYAGETGELGLDMEAMGHLYRIFQ FT ESMTNVAKHAQASEVQVRLGRDAATLVLSVRDNGVGLSGDDRRPGAYGLLGMRERARRL FT GGTLSVGAAPEGGTVLTVEIPAPGG" FT misc_feature 985410..985604 FT /note="HMMPfam hit to PF00989, PAS domain, score 8.1e-07" FT misc_feature 986172..986450 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 4.5e-20" FT CDS complement(986456..987244) FT /transl_table=11 FT /locus_tag="BPP0913" FT /product="putative enoyl-CoA hydratase" FT /note="Similar to Escherichia coli probable enoyl-CoA FT hydratase PaaF or B1393 SWALL:PAAF_ECOLI (SWALL:P76082) FT (255 aa) fasta scores: E(): 6.5e-20, 32.29% id in 257 aa, FT and to Pseudomonas aeruginosa probable enoyl-CoA FT hydratase/isomerase Pa2841 SWALL:Q9I002 (EMBL:AE004711) FT (263 aa) fasta scores: E(): 9.1e-38, 45.13% id in 257 aa" FT /protein_id="CAE40321.1" FT /translation="MEAIKQAGEVHLERDGPLCIITVDNAAKKNAFSPEMMDQLARHLT FT AFEEDDSLWVAVLCAAGEHTTAGLDMPKFFGPDATAKPRPDAWVDPFGLKRRTTKPVIA FT VVQGITFTIGIEIMLACDIVVAADTARFGQLESRRGIAPLGGAHFRYLTRTGWGNAMYH FT LFLCEEFGAQRALELGFVQEVVPYGQHIERALDLARRICRNAPLGIRATKQAALAYLEG FT GEQAAIACIPEIRAKVFASEDFKEGIQSFIERRDARFQGR" FT misc_feature complement(986687..987190) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 1.8e-25" FT CDS complement(987264..988061) FT /transl_table=11 FT /locus_tag="BPP0914" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="Similar to Bordetella pertussis hypothetical 29.5 FT kDa protein SWALL:O30448 (EMBL:AF006000) (270 aa) fasta FT scores: E(): 2.9e-57, 54.92% id in 264 aa, and to FT Mycobacterium tuberculosis hypothetical 35.2 kDa protein FT Echa13 or Rv1935c or Mtcy09f9.29 or Mt1985 SWALL:P95279 FT (EMBL:Z84498) (318 aa) fasta scores: E(): 5.5e-21, 42.63% FT id in 258 aa" FT /protein_id="CAE40322.1" FT /translation="MSYEFIRVEHLGPVCRIYLNRPEVRNAQSRSLLRELDDAVRAAEA FT DDAVRVLIIGAVGDHFSAGHDLKSARVERPNPTVEERWEYEEEHFLEYCLRIHDLKKPT FT IAQVQGACIAGGYMVANMCDLIVCADNAFFSDPVAHSMGTASLEVLIHPWVMGMRKAKE FT LIFTGARLPAAEALQIGMINRVVPLAELEQATLELANTIAAAPPYGLRFTKRSLNRTWD FT AQGFRAAVQAHFDVHQLSHVTEEFQAHLKRGLDSTIKRAKAVS" FT misc_feature complement(987501..988019) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 1.3e-28" FT CDS complement(988071..989948) FT /transl_table=11 FT /locus_tag="BPP0915" FT /product="putative long-chain-fatty-acid-CoA ligase" FT /note="Similar to Bacillus subtilis FT long-chain-fatty-acid--CoA ligase LcfA SWALL:LCFA_BACSU FT (SWALL:P94547) (560 aa) fasta scores: E(): 2.3e-30, 29.98% FT id in 557 aa, and to Pseudomonas aeruginosa probable FT amp-binding enzyme Pa3860 SWALL:Q9HXE6 (EMBL:AE004803) (632 FT aa) fasta scores: E(): 8.5e-59, 43.58% id in 569 aa" FT /protein_id="CAE40323.1" FT /translation="MEIPRYWVRADLSTAERIRQFEAVPLHERGLPDSTYAFLARGCRQ FT APRATAIRYLPDPAACHEREDIDFGRLLERVHQTANLIHAEGVGPREVVSLLLPNTPQG FT QYALWGGQAAAIVNPINWMLEPEAIAAIVRAADARMLMAYGGDAQLDIWDKVLRVAELC FT PQLRTIVRLGGSRAGAAPAGRRFLDYDAVIDGYRADALDFARAIGPHDLAALFPTGGTT FT GDPKLVRHSHWNEVVSAWLSAAVAGIVEGESRLSATPLYHVVGAFAGSLATLARGGTLV FT LATSVGWKHPQLLARIWEVVQACQVNYLTIVPTIMNQLVQMPIGGHDISCVKGVLSGSA FT PLSENVARRFLALTGLPVREGYGMTETTSVCMMNPRGGPVKTGSVGLLFPYHRARVARL FT EPGAAPRDCAPSETGVLALQGPTVFDGYAAGAQGGFLEPGWLDTGDVARIDADGYIWIA FT GRTKDLIIRGGHNIDPKAVEEAFYRHPQVLEAAVVARPDGYAGEVPVAYVQLVDGADLD FT AARLLAEVRPDIAERAAVPKDCYLMAALPKSPVGKILKHRLREDAMLRGFEKALRGAGI FT ETGYALALADGPAVRIRLLVPGLAPQQVRDALATFTIPYFIETADPAAV" FT misc_feature complement(988473..989747) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 1.4e-71" FT misc_feature complement(989271..989306) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(989975..991768) FT /transl_table=11 FT /locus_tag="BPP0916" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Ralstonia solanacearum putative acyl-CoA FT dehydrogenase oxidoreductase protein Rsc0473 or Rs04422 FT SWALL:Q8Y263 (EMBL:AL646059) (595 aa) fasta scores: E(): FT 8.9e-121, 55.09% id in 579 aa, and to Pseudomonas FT aeruginosa probable acyl-CoA dehydrogenase Pa0507 FT SWALL:Q9I611 (EMBL:AE004487) (598 aa) fasta scores: E(): FT 8.4e-102, 48.95% id in 574 aa" FT /protein_id="CAE40324.1" FT /translation="MKDGLYTAPQRDMQFALYDVLDIEGELARRAAPMAIDRETLDQVI FT EGADRLCHGVLAPLNASGDRAGCRLEGHEVRTPAGFVEAYRAYAEGGWSGLCASPDHGD FT QGLPTVASAIVGEMLGATNISFALYPRLSEGAYRCIRANASAALQAIYAPRLASGEWTG FT TMCLTESQAGTDLGLLRTRAEPDGDGAYRISGSKMFISSGEHDLASNIVHMVLARLPDA FT PAGTRGISLFVVPKRLPDAQGEPGERNGVYCDAIEHKLGLHANATCVLRFENARGYLVG FT EPNKGLAAMFVMMNSARLGTGAQALGLTETALQKSLAYAAERLQSRAPGHEKAITRADP FT IILQPDVRRMLLTQQAWAQGARMFLYWLALQIDTELHAADPAERDRAGGLLSLLTPVAK FT AFVSDNAVESVNLAVQVHGGSGYIVESGIEKTLRDVRILPIYEGTNGVQAHDLLARKVL FT ADQGARLSQLLAMAQAQAQAAAVSAVEGGARFGQPLRELAGQVADAVPRLAELAARDPA FT QVGASSTDFLRLVGHLVYGYFWSRAAQTALTRLPEDDPLRAEKLATARFYFEHLFPETE FT MRLRRLFVPADCLTTPCALAA" FT misc_feature complement(990170..990217) FT /note="PS00012 Phosphopantetheine attachment site." FT misc_feature complement(990395..990919) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 9.1e-45" FT misc_feature complement(990467..990526) FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT misc_feature complement(990929..991273) FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 1.5e-13" FT CDS 991886..993106 FT /transl_table=11 FT /locus_tag="BPP0917" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT Mll1909 SWALL:Q98JK0 (EMBL:AP002998) (406 aa) fasta scores: FT E(): 1.4e-77, 61.38% id in 404 aa, and to Rhizobium FT meliloti hypothetical protein R00749 or Smc00804 FT SWALL:Q92KM5 (EMBL:AL591784) (407 aa) fasta scores: E(): FT 1.8e-72, 58.37% id in 406 aa" FT /protein_id="CAE40325.1" FT /translation="MDEGIAAAARALALGDALAALNQVALRDDAPALALRGIALAQLGD FT FDRARALVRRAARAFGPGNAVARARCALAEGEIALAARDLAWPGAALRAAQRTLAAHGD FT WRNAAYAQYLEVRRLLLVGELERAAEWLERLERPFLPHDLRAIHDLLAAGLAMRQLRAG FT AARAALARAAQAARHAAIAPLAAEVARAASLLDAPVAQVRSRGGERPARLDEVEALLAG FT PVLVVDACRYVVCAGAARAVLSRRPVLFALARALAEAWPGEVAREALIDQVFRTRVPDE FT SHRARLRVEIGRLRAALSGMAAPRAIGRGYVLAPDGARQVAVLAQPVQTPHAAVLALLA FT DGQAWSSSALALALDASQRSVQRALQALAAAGRAQALGRGRTRRWVAAPAAAFATNLLL FT CTALPAF" FT CDS 993142..993780 FT /transl_table=11 FT /locus_tag="BPP0918" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT R00750 or Smc00805 SWALL:Q92KM4 (EMBL:AL591784) (214 aa) FT fasta scores: E(): 1.1e-54, 68.09% id in 210 aa" FT /protein_id="CAE40326.1" FT /translation="MKRSPAHIVREYGPFAGVEQVHGLTYDGRHVWFAVGDSLAALEPE FT SGEVARRIDVPAQAGTAFDGRHLFQIAGDVIQKIDPASGRVLGTIAAPPGGCNSGLAWA FT EGMLWVGQYQPRQILQLDPATGAILRTLQSDRYVTGVTWVDAQLWHGTWEDGTADLRRV FT DPATGEVLQVLEMPAGAGLSGLESDGAQRFFCGGGDRGVVRVVRRPAAE" FT CDS complement(993800..994393) FT /transl_table=11 FT /locus_tag="BPP0919" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsp1483 or Rs03060 SWALL:Q8XQ03 (EMBL:AL646085) FT (219 aa) fasta scores: E(): 1.4e-16, 50.9% id in 220 aa" FT /protein_id="CAE40327.1" FT /translation="MTDDAARQAQARLDAWRERGGEQADPLRFHYLQALARRAAGHEGQ FT ARQLLDERLAGLMAACPETAAAAPPAGPDPARAPGPLGQLCAQIAVAAPARPAYPELPL FT LDEFRQAWTRLSTDRQLRQSEQLVPENAGPLNSSHLAHRSLALMQGLSPGYLQQFLSYV FT DALGWLEQLTANAAPAARDTARATPRKTARARSR" FT CDS complement(994386..995033) FT /transl_table=11 FT /locus_tag="BPP0920" FT /product="probable outer membrane protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT transmembrane protein Rsp1482 or Rs03061 SWALL:Q8XQ04 FT (EMBL:AL646085) (215 aa) fasta scores: E(): 4.8e-60, 79.22% FT id in 207 aa" FT /protein_id="CAE40328.1" FT /translation="MNEHLDAGPDAAVPTWAVFGDLMSVLLGAFVLILVGVVGMQIELS FT TRLEAEVEQRQAETQRREALEQALAAPLAAGRVTLVDGRIGISGNVLFALNSDQLQPEG FT REILASLVAPLSAYLRAHDEILMVSGFTDDQQVHQGNRRYADNWELSAQRALTVTRALI FT DAGIPAASVFAAAFGAEQPVASNADETGRAQNRRVEIAPIPRQSADKVPARD" FT misc_feature complement(994446..994760) FT /note="HMMPfam hit to PF00691, OmpA family, score 2.3e-19" FT misc_feature complement(994923..994988) FT /note="1 probable transmembrane helix predicted for BPP0920 FT by TMHMM2.0 at aa 15-37" FT CDS complement(995030..997630) FT /transl_table=11 FT /locus_tag="BPP0921" FT /product="putative membrane protein" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein Rsp1481 or Rs03062 SWALL:Q8XQ05 FT (EMBL:AL646085) (698 aa) fasta scores: E(): 9.7e-75, 50.4% FT id in 863 aa" FT /protein_id="CAE40329.1" FT /translation="MIRTLINIAVFLAGLGAVCWIGAGYVGSNPLGLAITALVGIIYLA FT GALELYRYQRATATLDHALAATTEPPADLAAWLAPLHPSLRNATRLRIAGERVALPGPA FT LTPYLVGLLVLLGMLGTFLGMVATLRGTGIALESATDLQAIRASLAAPVKGLGFAFGTS FT VAGVAASAMLGLLSALCRRERIQAGQALDARIASTLRPHSLAHQREASFQLLQRQAEGM FT PALVDRLQAMLAAMAQHSQAVNDGLAQQSRQLTDALTRQSQTLADTLTRQSDTLAERLD FT RQSQTLASSLDEQSRRLGASLGEQSQTLAGSLERQSQTLAASLARQSDTLSDTVARQSS FT TLAQTLTQQGESLAATLTGQNASLATALTQQGESLASTLAGETRELAARLDQQGRTVAD FT ALGQHSQAMAERLAAGQDAFHEKAAQAYTGLAASVRQTLNDSVAASAQAAGAAIQPAVQ FT ATLAGLASETAAWRETVGQAVQQQLAELSGRFEASTAGVAGIWNDALARHQQASESLAE FT SLRSAQQHLAAHFEQRSAALLDTVAARLQGATDEVRDGWRDAVTRQEQAAAALASQQGQ FT TVAEAAGAFARHTAELLHAVEQSQTQLQAELAARDAQRESAWTHALEAMAAQLRSAWQE FT TGAQTAAQQREICATLAQTAQDISSQSREHATRTVAEIGQLLEAAAQAPRAAADVVAEL FT RQKLVDSMERDNAMLEERSRLLATVETLLGAVNHASSEQREAIDALVASSADLLERVGA FT RFADSIESGAGRLEAASAQAIASAADVASLGEAFGAAAQVFGAANDRLAEQLGRIETAL FT DKSLARSDEQLAYYVAQAREVVDLSVLSQKQILEDLQRLAQQPEPAGAEAAETP" FT misc_feature complement(join(997271..997336,997472..997537, FT 997550..997615)) FT /note="3 probable transmembrane helices predicted for FT BPP0921 by TMHMM2.0 at aa 5-27, 31-53 and 98-120" FT misc_feature complement(997547..997630) FT /note="Signal peptide predicted for BPP0921 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.979) with cleavage site FT probability 0.652 between residues 28 and 29" FT CDS complement(997641..998375) FT /transl_table=11 FT /locus_tag="BPP0922" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsp1480 or Rs03063 SWALL:Q8XQ06 (EMBL:AL646085) FT (246 aa) fasta scores: E(): 7.3e-45, 58.36% id in 245 aa" FT /protein_id="CAE40330.1" FT /translation="MVQVPQRTGFSGPTLVRLLTRLTEVDAPESRQSLADRLSHWLGWT FT DAIALSAALNGEPPAVPRGQSADGSAEAQECERVRATLIEAIAGKGRNAAARNRATARA FT PARPAPRDEDVEYTEYRQRYQALQQTMENTIAVLRGRLRAALAARAPAHTRLAVVDAIM FT ERSLGARERTLLAAVPTLLERHFERLRQAALAGPQEAGDAAPPQPGAWLATFGRDMRSV FT LLAELDIRLQPVEGLLAALRAS" FT CDS 998593..999222 FT /transl_table=11 FT /locus_tag="BPP0923" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE40331.1" FT /translation="MNPAIAAGRRLADYVLPDHTKTPRRLSALQGDDPMLLVLIRGFFC FT PKDREQLKTLTRFHPQLVVGNCRLVVITTDDWHTTNNLRQQLGAHYPFLYDGEKRVRDD FT LDILEYTDPQHEPMVPHTLLLASGLEIRRIWNGYYYWGRPSTAELHDALREVTRDIRPD FT WDLSDPELKRRWAAGDKSVFFPYGSKSMEQTLKEMAGAVDQYAGRA" FT CDS 999411..999917 FT /transl_table=11 FT /locus_tag="BPP0924" FT /product="conserved hypothetical protein" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi hypothetical 18.7 kDa protein putative YciF or FT Stm1729 or Sty1322 SWALL:Q9L435 (EMBL:AJ251362) (167 aa) FT fasta scores: E(): 2.5e-34, 67.06% id in 167 aa, and to FT Escherichia coli and Escherichia coli O157:H7 hypothetical FT 18.6 kDa protein YciF or Z2554 or Ecs1830 SWALL:Q933I0 FT (EMBL:U23497) (166 aa) fasta scores: E(): 1.8e-33, 67.28% FT id in 162 aa" FT /protein_id="CAE40332.1" FT /translation="MTRKTLQELFIHELSDIYSAEKQLTKALPKMARSASDPKLAEAFS FT AHLEETRGQVERIDQIVEGSDLRLKRMKCAAMEGLVEEGKEVMDEIEPGPVLDAALIAA FT AQKVEHYEIASYGTLCTFAKQLGETKALALLKETLAEEKATDEKLSMLALKQVNADAAA FT AGKAK" FT CDS complement(999924..1000502) FT /transl_table=11 FT /locus_tag="BPP0925" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE40333.1" FT /translation="MKRDDNATVDGACVRFTLQSPHGPTVVAVTAKALVEHCGADNSEP FT GLLQGYRAHWPRIHAVARQLAPSTLDGGVRVTASDLANARSTPMSDSKDHRAAPARKPA FT RIAGQPDINSAAPRPGRRADDSPRRPDMDHPPPARAHDRPGFDRGVAAEEAQARAGTLP FT GADAGGPPRRRDEEAAPRPAGKPAGAKRR" FT CDS complement(1000561..1001640) FT /transl_table=11 FT /locus_tag="BPP0926" FT /product="putative calcium/proton antiporter" FT /note="Similar to Escherichia coli calcium/proton FT antiporter ChaA or B1216 SWALL:CHAA_ECOLI (SWALL:P31801) FT (366 aa) fasta scores: E(): 1e-29, 28.88% id in 360 aa, and FT to Rhizobium leguminosarum CpaA protein SWALL:Q9XAT5 FT (EMBL:AJ006753) (333 aa) fasta scores: E(): 1.7e-77, 66.36% FT id in 333 aa" FT /protein_id="CAE40334.1" FT /translation="MIRLLREEKFIVLALLAALADLLPGPWRHAGAAAAMAETVVLVAA FT ILAASLSVVRHAELIARKLGDPYGSMILTLSAVLVEVIVLGIVSRGGASPELVRDTIYS FT AVMLDINGILGLAALIGGFKHGEQAYNDDSARTYGVMILTAVAVSMIIPEFIPSARWRA FT YSVFTIVVMVLLYGVFLRMQTGPHSYFFSYSYPEKNARRRQAPVPVHTPRSAGVMIAGI FT AIVGLLAELMSHSMQRGLRGVAVPAGVVPLVIAGISAAPEILTALRAALANRMQSVVNI FT AMGASLSTVILTVPAMEAMALYSGQALRMAMTPLQTVMMLVTLIAAAINLNDGQTNAIE FT GMTHFVLFAAFLMLVALGL" FT misc_feature complement(join(1000570..1000626,1000648..1000704, FT 1000750..1000806,1000846..1000911,1000942..1001007, FT 1001101..1001157,1001170..1001235,1001272..1001337, FT 1001374..1001439,1001479..1001544)) FT /note="10 probable transmembrane helices predicted for FT BPP0926 by TMHMM2.0 at aa 32-54, 67-89, 101-123, 135-157, FT 161-180, 211-233, 243-265, 278-297, 312-331 and 338-357" FT misc_feature complement(1001530..1001640) FT /note="Signal peptide predicted for BPP0926 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.989) with cleavage site FT probability 0.731 between residues 37 and 38" FT CDS 1001837..1002268 FT /transl_table=11 FT /locus_tag="BPP0927" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1354 SWALL:Q9I3Z0 (EMBL:AE004565) (141 aa) fasta FT scores: E(): 1.2e-35, 70.29% id in 138 aa, and to FT Agrobacterium tumefaciens hypothetical protein Atu0851 or FT Agr_c_1556 SWALL:AAL41865 (EMBL:AE009052) (140 aa) fasta FT scores: E(): 1.1e-29, 57.66% id in 137 aa" FT /protein_id="CAE40335.1" FT /translation="MRFMVLVKADRNSEAGVMPEERLLAEMGKFNEALVQAGVMQAGEG FT LHPSSRGARVHFSGKDRKVEHGPFDTPGLIAGFWLWQCASLEEAIDWVKRCPNPMLGDS FT EIEIRQIFEAEDFGAAFTPELREQEARLRQQIEAEARKP" FT CDS 1002327..1003073 FT /transl_table=11 FT /locus_tag="BPP0928" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Brucella melitensis transcriptional FT regulator, GntR family Bmeii0116 SWALL:Q8YDQ9 FT (EMBL:AE009650) (244 aa) fasta scores: E(): 2.1e-58, 69.26% FT id in 244 aa, and to Pseudomonas aeruginosa probable FT transcriptional regulator Pa2299 SWALL:Q9I1H6 FT (EMBL:AE004655) (249 aa) fasta scores: E(): 2.8e-26, 40.17% FT id in 234 aa" FT /protein_id="CAE40336.1" FT /translation="MMSESNHAPLYARVEAVLAEAIAAGELPPGSQLPAEDGLIARFQV FT SRTTVRKAIQNLAERGLVEIRRGKGTFVAQPRVVQELTELTGFVEDMQALGRVPSARLL FT DAEIVAAGQAVARQLAVAPGTQVMRIRRVRLADGVAMSLDETYLPREIGEQVVTHDLEA FT EPIFALLEQKYDLPLVEAEYRLEAAIATPEVARALAVPPGSPVFLIERTSYCAGPRPID FT YEKLYYRGDLIRFVTRLARRARPVPA" FT misc_feature 1002366..1002545 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.6e-22" FT misc_feature 1002423..1002497 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS 1003070..1003924 FT /transl_table=11 FT /locus_tag="BPP0929" FT /product="putative membrane protein" FT /note="Similar to Brucella melitensis hypothetical membrane FT spanning protein Bmeii0117 SWALL:Q8YDQ8 (EMBL:AE009650) FT (259 aa) fasta scores: E(): 1.1e-56, 65.11% id in 258 aa, FT and to Listeria innocua hypothetical protein Lin2503 FT SWALL:Q928M9 (EMBL:AL596172) (279 aa) fasta scores: E(): FT 2.1e-37, 43.63% id in 275 aa" FT /protein_id="CAE40337.1" FT /translation="MTVAGLWLFAMALGASALGGMLGMASGIFIVPLLVLWGIDVHAAI FT AASIVSVIACSCGSAAAFLQSGLTHVRLAVVLETATTLGALTSVFLVGAVPVAALYALF FT AVVLVVSAWQMLARRRDPARASGAPACRWAGALRLHGRYRDPAAGRHRRYRVQRLPLGM FT SLMYGAGVLSALLGIGSGVLKIPAMDSALRLPLKVSSATSNFMIGVTAAASAAVYFARG FT EIDPAVAGPVALGSVAGSVLGARILMHVSGERLRLLFVAVLALLAVQMLLMALGVQWPG FT GGR" FT misc_feature 1003070..1003207 FT /note="Signal peptide predicted for BPP0929 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.986) with cleavage site FT probability 0.285 between residues 46 and 47" FT misc_feature join(1003112..1003180,1003199..1003267,1003334..1003402, FT 1003550..1003618,1003661..1003729,1003832..1003900) FT /note="6 probable transmembrane helices predicted for FT BPP0929 by TMHMM2.0 at aa 15-37, 44-66, 89-111, 161-183, FT 198-220 and 255-277" FT misc_feature 1003316..1003882 FT /note="HMMPfam hit to PF01925, Domain of unknown function FT DUF81, score 2.8e-22" FT CDS 1003921..1004217 FT /transl_table=11 FT /locus_tag="BPP0930" FT /product="putative membrane protein" FT /note="Similar to Brucella melitensis hypothetical protein FT Bmeii0118 SWALL:Q8YDQ7 (EMBL:AE009650) (107 aa) fasta FT scores: E(): 2.9e-05, 41.23% id in 97 aa" FT /protein_id="CAE40338.1" FT /translation="MSARAGAGLEIRLAVLLRAGTWAACLIIAAGLLLGMIDAPAGARV FT VNAGIVLFIALPAARLLAMLAAFARQRDWRYALIVALVLAIMAAGLALGLRAG" FT misc_feature join(1003957..1004025,1004068..1004127,1004146..1004205) FT /note="3 probable transmembrane helices predicted for FT BPP0930 by TMHMM2.0 at aa 13-35, 50-69 and 76-95" FT CDS complement(1004218..1004880) FT /transl_table=11 FT /locus_tag="BPP0931" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative GntR-family FT transcription regulator ra0084 or sma0160 SWALL:Q930W0 FT (EMBL:AE007202) (224 aa) fasta scores: E(): 3.2e-19, 33.48% FT id in 215 aa, and to Acinetobacter calcoaceticus FT transcriptional repressor MdcY SWALL:Q9F0Q8 (EMBL:AF209728) FT (224 aa) fasta scores: E(): 5.1e-22, 35.23% id in 210 aa" FT /protein_id="CAE40339.1" FT /translation="MKVSDRIRQALEADIRNGVLLPGDAIDEQELAARHQVSRTPVREA FT LLQLKVQGILDSQPRGGAVVARMDVQELLAIWELMAEMEGVCTRMACQRMTAEERSELA FT RVHREAAPVAQADDAQAWREANHRFHEVLYHGCRNPYLREQLLALRARTGAYLRHAFIA FT VGRVRASYEQHGELVQAILDHDPERAHRMMMRHISLAQGAKGLADFLINLPRSMVKP" FT misc_feature complement(1004686..1004862) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 8.8e-18" FT CDS 1005142..1006533 FT /transl_table=11 FT /locus_tag="BPP0933" FT /product="putative amidase" FT /note="Similar to Caulobacter crescentus FT pyrazinamidase/nicotinamidase Cc2613 SWALL:Q9A551 FT (EMBL:AE005929) (464 aa) fasta scores: E(): 6.2e-23, 36.15% FT id in 390 aa, and to Anabaena sp. glu-tRNA Alr1018 FT SWALL:Q8YY34 (EMBL:AP003584) (464 aa) fasta scores: E(): FT 9.3e-23, 32.87% id in 435 aa" FT /protein_id="CAE40340.1" FT /translation="MTPAGLPDSIAGLRAQLAAGALDVAQAQALALQRQACEADGWHCV FT VALPDDAGEVPPASLPLAGVGLAHKDIFVLPGRVPECGARHPWPDAPVRAATVIRRLAA FT AGSRPLAALAMAEHASGATGENPRYSLLRNPLDADAAVGGSSSGSAVAMAAGLCYGSLG FT TDTAGSVRIPAATCGVVGLMPTRGLLPGDGVAPLAGELDTVGVLARCADDAQAVLHAAL FT DAAQAAALDASATPAMERWRIATCWIHPDPAVRLDPAVHAALEDYATECSAHGRRREAQ FT LAALPQWIRLAQTLLYAGSAAAHAQALRGQAPALGALARNLALTGAAMPPAWAHAALAQ FT RRAQVDAFVAEALADTDVLLTPALPGPVPDWSQVLTSSPGFEARRLLDLFCWLSFVNYL FT GLPAIVFPIGRDAAGRPISVQAIARPGGEAMLLALARQAGHSRFGGRGFAQQPGLPLAR FT SRERV" FT misc_feature 1005226..1006437 FT /note="HMMPfam hit to PF01425, Amidase, score 4.9e-38" FT misc_feature 1005568..1005663 FT /note="PS00571 Amidases signature." FT CDS 1006536..1007732 FT /transl_table=11 FT /locus_tag="BPP0934" FT /product="conserved hypothetical protein" FT /note="Similar to Agrobacterium tumefaciens L-carnitine FT dehydratase CaiB or Atu2127 or Agr_c_3858 SWALL:AAL43117 FT (EMBL:AE009163) (397 aa) fasta scores: E(): 1.5e-46, 39.74% FT id in 390 aa, and to Thermoplasma volcanium L-carnitine FT dehydratase Tv1186 or Tvg1215416 SWALL:Q979H5 FT (EMBL:AP000995) (399 aa) fasta scores: E(): 2e-44, 34.28% FT id in 385 aa" FT /protein_id="CAE40341.1" FT /translation="MPQLSASPALQRFRVLDLSRVRAGPTCVRMLADFGADVIRIEPPP FT GVDPNEAMFAADRWSGDFQNLNRNKRSLTLNLKKPEAMAVLRRLVAGADVVVENWRPDV FT KARLGVDYESLHAINPRIILASISGFGQSGSYAGRPGFDQIAQGMGGLMSVTGLPGQGP FT VRAGLAVADSSTGLYAAIGILTALLEREQSGQGQWVHASLLHAQIAMMDFQAARYLNDG FT DVPAQEGNDHPTSSPMGLFAASDGMFNLGASGEGNWKRFCQVLGQIGWLADPRFQTEKL FT RVRNRRDLNALIGEVFAGGTVAHWVGLLNEAGVPAGPVYTVPQMFDDAQVRHLDVARRC FT QAWQGGERVMITQPVTLARTPADIARTAPGWGEHTDEVLREAGYGEDEIDKLRAAGAV" FT misc_feature 1006752..1007318 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 8.7e-67" FT CDS 1007753..1008556 FT /transl_table=11 FT /locus_tag="BPP0935" FT /product="putative enoyl-CoA hydratase" FT /note="Similar to Brucella melitensis enoyl-CoA hydratase FT bmeii1021 SWALL:Q8YB79 (EMBL:AE009734) (261 aa) fasta FT scores: E(): 1.2e-19, 36.86% id in 255 aa, and to FT Deinococcus radiodurans 3-hydroxybutyryl-CoA dehydratase FT Dr1151 SWALL:Q9RV78 (EMBL:AE001964) (302 aa) fasta scores: FT E(): 1.4e-19, 35.29% id in 255 aa" FT /protein_id="CAE40342.1" FT /translation="MSTDTHPPGRLAIDDADGLLRVRIVNPARYNAMSLSMWEALGQAV FT RDAQGRDDLRAIVLEGEGERAFVSGADISEFASQRKDPAQIARYDRAVTQAQQALSESA FT VPTIALVRGICMGGGMGLALACDLRYCNESARFRMPAARLGLGYALDGVKRMCDMLGAA FT RAADLFLTARTFDGAEAGRIGLAHEVFADADFTQAAAERVAAVAGNAPLTLRAARLALR FT HLLGGAHAPSADSVDQAVRTCFDSEDYQEGQAAFREKRPPVFKGR" FT misc_feature 1007810..1008325 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 2.3e-34" FT misc_feature 1008074..1008136 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 1008636..1009613 FT /transl_table=11 FT /locus_tag="BPP0936" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens ABC FT transporter, substrate binding protein SsuA or Atu6059 or FT agr_pti_119 SWALL:AAL46295 (EMBL:AE009424) (320 aa) fasta FT scores: E(): 3.7e-10, 28.83% id in 267 aa, and to Rhizobium FT loti aliphatic sulfonate binding protein Mll4559 FT SWALL:Q98DT3 (EMBL:AP003004) (317 aa) fasta scores: E(): FT 5.3e-09, 27.07% id in 314 aa" FT /protein_id="CAE40343.1" FT /translation="MKTLHRTALAVLFSGYAAVAAAQSAQPPAAPQKQVLTIGYVKVGH FT LSPMIFVSEPLKACNVEVKPVEFVRYADARTALLSGSIDVSGIGPADLAIALAQGSDKI FT VGLAGVASSPKYLVTRKGVKMDDWKDLAGKRVGIAPGSAVWFQWAATLAEKGIPYNSFT FT AVNIQGGGTAFVQALQRGDVDAVALWEPFESQLVADGTAFFAKNLEYSQSKAVGAELGL FT LAATREALQTKREAVKCFLWAYQRAEKQLEQDPEAFAQAYSKYTNLPLSVTRESVKLIK FT LGGVLDLDQLRRQAKTFNELGVISKDVSGQIDKVWDPTLAREVR" FT misc_feature 1008636..1008701 FT /note="Signal peptide predicted for BPP0936 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.607 between residues 22 and 23" FT CDS 1009646..1010503 FT /transl_table=11 FT /locus_tag="BPP0937" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Enterobacter cloacae putative ABC FT transporter permease SWALL:Q9ALV4 (EMBL:AF342826) (268 aa) FT fasta scores: E(): 3.8e-32, 41.83% id in 251 aa, and to FT Methanococcus jannaschii putative ABC transporter permease FT protein Mj0413 SWALL:Y413_METJA (SWALL:Q57856) (267 aa) FT fasta scores: E(): 4.8e-30, 39.14% id in 258 aa" FT /protein_id="CAE40344.1" FT /translation="MSSSILKRPAAPAPAAPAGAPAGRALRRLGLGLAVPVLILVVWQL FT VGQSAAMAGVVPTPVQVARAWYAWIFGDPGMGLNPYQGTWVSNVQYSTMRVAQGFALAM FT ATGIPLGLAIGWSRLTSQLLDPLIQGLRPIPITAWLPFSIALFGIRDMGSIFLIFLGGF FT YAIVVNTTQGARDVDRNLVRAASMMGASSGQLMRRVVLPAAMPSIFTGLRIGLGISWTA FT VIVSEMVAVKSGLGYVLWDAYYVGRMDIVLADMVSIGMMGFLSDRLIVAIEHRVLAWRM FT LQNH" FT misc_feature join(1009733..1009801,1009844..1009912,1009931..1009999, FT 1010081..1010149,1010267..1010335,1010393..1010461) FT /note="6 probable transmembrane helices predicted for FT BPP0937 by TMHMM2.0 at aa 40-62, 77-99, 106-128, 156-178, FT 218-240 and 260-282" FT misc_feature 1010162..1010377 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 4e-16" FT CDS 1010511..1011260 FT /transl_table=11 FT /locus_tag="BPP0938" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="Similar to Pseudomonas aeruginosa probable FT ATP-binding component of ABC transporter Pa2294 FT SWALL:Q9I1I1 (EMBL:AE004655) (284 aa) fasta scores: E(): FT 2.8e-39, 53.6% id in 250 aa, and to Streptomyces coelicolor FT putative ABC-transport protein, ATP-binding component FT Sco7545 or Sc8g12.21 SWALL:Q9KYY4 (EMBL:AL355753) (270 aa) FT fasta scores: E(): 1.2e-37, 49.4% id in 251 aa" FT /protein_id="CAE40345.1" FT /translation="MSHISVTQLSKTYPGVTPVHALDQIDLQVAEGEFIALLGPSGCGK FT STLLNLIAGFEAPSGGELRVGGGAVERPGPERGVVFQEAALFPWLNVWENVVFGPKIAG FT LSRREYAARAEEMLEITGLSAFKRHLPVQLSGGMRQRVGIARVLTLGSRVLLMDEPFGA FT LDAQTRLTMQELLLSVWQTLRTTVVFVTHDIDEAILLADTIYVMSARLGRIATRIEVPI FT ERPRSLDLITGEVFNGLKREILKQMRH" FT misc_feature 1010604..1011140 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 5.4e-58" FT misc_feature 1010625..1010648 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1010910..1010954 FT /note="PS00211 ABC transporters family signature." FT CDS 1011282..1012154 FT /transl_table=11 FT /locus_tag="BPP0939" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc2605 SWALL:Q9A559 (EMBL:AE005928) (304 aa) fasta FT scores: E(): 1.3e-16, 27% id in 300 aa, and to Rhizobium FT meliloti putative enzyme, similar to uricase protein Rb0788 FT or Smb21284 SWALL:Q92VC0 (EMBL:AL603644) (471 aa) fasta FT scores: E(): 2.5e-16, 29.31% id in 307 aa" FT /protein_id="CAE40346.1" FT /translation="MANPRIAHAFPDDRAPCAPPAGGRIMVHLVVNVENWRFDQPMPRT FT LITPPHGRETVPDVPNFSWVDYGMRAGLARMLQAIGERGLPASTSCNASVIDAYPRAAE FT AMLRAGWEFIGHGMHQQSLNHGGGEAELIAQCLDKLRAFTGARPRGWLSPGLRETVDTP FT DILAAAGVEYVCDWVVDDLPNWMRVERGALIQMPYNLELNDSVIYAVEKHSSPEFLLRL FT ERTLALFERECRRWPRVLALGLHPHLMGVPHRYGYFEQMLDLLAGHPDVVFMNGGQIAD FT WFKSQYPAP" FT CDS 1012183..1012962 FT /transl_table=11 FT /locus_tag="BPP0940" FT /product="probable short chain dehydrogenase" FT /note="Similar to Ralstonia solanacearum probable FT dehydrogenase/reductase oxidoreductase protein Rsc2186 or FT Rs01413 SWALL:Q8XXC9 (EMBL:AL646068) (263 aa) fasta scores: FT E(): 2.2e-19, 37.74% id in 257 aa, and to Pseudomonas FT putida probable short-chain dehydrogenase TdnH SWALL:Q93JW4 FT (EMBL:D85415) (264 aa) fasta scores: E(): 3e-16, 31.39% id FT in 258 aa" FT /protein_id="CAE40347.1" FT /translation="MDLQLAGKRVLITGASKGIGLACALSFAREGATPVLVARDAQALA FT RAADAVREQTGQAAETHAQDLALPGAAQALAARAGEIDILVNNAGAVPGGALDQVEDER FT WRAGWELKVHGYINLARVYYPRMRAAGAGVIANVIGMAASSPRYDYVCGAAANAALVAF FT TRALGGEGPRHGVRVFGVNPSRTRTDRVLGLAQQRAQARWNDPDRWQETLGGLPFDRLM FT EPAEVADVVVFGCSPRAGYLSATVIDLDGGEQYRGAA" FT misc_feature 1012198..1012941 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 2.6e-40" FT CDS complement(1012996..1013793) FT /transl_table=11 FT /locus_tag="BPP0941" FT /product="putative transcriptional regulator" FT /note="Similar to Pseudomonas putida putative regulatory FT protein TtgV SWALL:Q93PU6 (EMBL:AF299253) (259 aa) fasta FT scores: E(): 4e-11, 28.63% id in 220 aa, and to Rhizobium FT meliloti putative calcium binding transcriptional FT regulatory protein Ra0381 or Sma0717 SWALL:Q92ZR8 FT (EMBL:AE007229) (569 aa) fasta scores: E(): 3.3e-10, 27.54% FT id in 265 aa" FT /protein_id="CAE40348.1" FT /translation="MATEKLPPLERYIRMLELLTAFPDGLALSELSAMIELPKASAHRL FT IKTLQELELAATSSPGSATYVTGPRLRKLAFMSADAQWVVAILRPFLRELTQEMGETAF FT VARLEGASVRTIAFEAPETPWRGFILPGYEMHPNAAASAKAILAFQDAATLKRALREPF FT ERLTPQTNLSKERLLEEYAAIRQSGVATCIGEIDEGLAAVAVPIEVGGAAGLYSLGLTG FT PMNRVMALGVERAAERMMAYAARMASGLSAGLSAESARAAGLS" FT misc_feature complement(1013044..1013601) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 7.3e-09" FT CDS 1014045..1015259 FT /transl_table=11 FT /locus_tag="BPP0942" FT /product="putative branched-chain amino acid-binding FT protein" FT /note="Similar to Pseudomonas aeruginosa leucine-, FT isoleucine-, valine-, threonine-, and alanine-binding FT protein precursor BraC or Pa1074 SWALL:BRAC_PSEAE FT (SWALL:P21175) (373 aa) fasta scores: E(): 1.9e-17, 28.61% FT id in 346 aa, and to Ralstonia solanacearum probable FT leu/ile/val-binding signal peptide protein Rsc2864 or FT Rs00241 SWALL:Q8XVG7 (EMBL:AL646072) (385 aa) fasta scores: FT E(): 1.4e-19, 28.68% id in 387 aa" FT /protein_id="CAE40349.1" FT /translation="MLPTSLMRRLALVALPLALSAGMAPAAAEPGVTADSLKIGILGSL FT TGPFAIFGSGNLAGATLAFEQANAAGGIHGRKLEWLSLDDESSPPKGIAAYKRLVGPEQ FT VFAVFGPSASAVGQAMVQTFKTSTTPTFISVFSTPIVTDPPLPNVFRTGPMNDREQGVA FT IANYALDHLKAKRVALIRQSDEYGKSGGESVLQRLKARGAEPVALEVFNVYDTDFNAQL FT TKIAAARPDVLVVYGYPNPSAIITRQARQLGVEGVVLGSNSAGSRKYPEIVGKAAAGTQ FT NIMTLEILPESSSTPQAQAFREAFVARFPDLARQGRPDLGDALGYGGALAFLEGIKRAG FT AQPTQQGLVKALESLQGFETGITLPTTFGPGVREGNRATRIVEVGDDLSRSILPIVVSV FT DGVKQ" FT misc_feature 1014045..1014128 FT /note="Signal peptide predicted for BPP0942 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.857 between residues 28 and 29" FT CDS 1015256..1015735 FT /transl_table=11 FT /locus_tag="BPP0943" FT /product="conserved hypothetical protein" FT /note="Similar to Archaeoglobus fulgidus maoc protein FT Af2313 SWALL:O27971 (EMBL:AE000944) (151 aa) fasta scores: FT E(): 6.5e-09, 34.55% id in 136 aa, and to Archaeoglobus FT fulgidus monoamine oxidase regulatory protein, putative FT Af1933 SWALL:O28346 (EMBL:AE000970) (161 aa) fasta scores: FT E(): 1.7e-08, 30.4% id in 148 aa" FT /protein_id="CAE40350.1" FT /translation="MNTAGQGGQSAQLYGVDLRPGLASHGSPATITRTENLGFAALTGD FT SHPIHYDEAFAARTRHGRCVVHGLLLASLGAFGATPLSRRIEDAMVAFVDSQFSFLKPV FT FIGDTVTSHFEVAQVEHKPARNLSLLRFDMWLTNDAGDTVMQGKHTYLVRMQPDT" FT misc_feature 1015304..1015675 FT /note="HMMPfam hit to PF01575, MaoC like domain, score FT 3.3e-11" FT CDS 1015752..1017383 FT /transl_table=11 FT /locus_tag="BPP0944" FT /product="acetyl-CoA synthetase" FT /note="Similar to Bacillus subtilis acetyl-coenzyme A FT synthetase AcsA SWALL:ACSA_BACSU (SWALL:P39062) (572 aa) FT fasta scores: E(): 1.9e-59, 37.11% id in 547 aa, and to FT Rhizobium loti acetyl-CoA synthetase Mlr2005 SWALL:Q98JC6 FT (EMBL:AP002998) (559 aa) fasta scores: E(): 5.3e-68, 41.54% FT id in 544 aa" FT /protein_id="CAE40351.1" FT /translation="MTPEYTAALERFDWRAVRGALGWGEAHAVDLAHAIIDRHRASGRT FT ALVFIDQQGRESRHSYAELAEQSDRAANLLARLGVRPGDRVAGLLPRGPEILVAMLAAI FT KIGAIYVPIFTGFKRDAIEYRLGHSGARVVFTHAALRGQLPAVLPGQARCVTVAAGAAD FT TAAGDIDFAAALREAEPRFAAQPREREDIAALIYTSGSTGRPKGGAIAVNFLAAVWPYL FT TYGADMRADDVVWPTGDPGWGYGFVCYLGALAMGATIVSLAANPTPEVCLDVLARQRVS FT NFATTPTLLRGVMALGMDAVRARPNAVRAISSCGEPLNGEVVEFFQQAWGRTPMDHFGA FT TEYGLPVGNFNAVAVPAKAGSMGLPFPGYEIAVLDDAGQPLAGAHASGWLAKRRSADRL FT YWSHYWDDAGATAELERGEWIVTGDLAHRDAEGYYWFDGRAGDMIKSAGYRIGPFEVES FT ALLAHGAVAEAAVVGVPDALRGELVKAYIVLLPGHAASPRLAEEIQLFVKTHCGAHLYP FT RIVEFVPDLPKTDTGKIQRFALRQRA" FT misc_feature 1015929..1017164 FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 4e-92" FT misc_feature join(1016034..1016102,1016370..1016429,1016472..1016540) FT /note="3 probable transmembrane helices predicted for FT BPP0944 by TMHMM2.0 at aa 95-117, 207-226 and 241-263" FT misc_feature 1016334..1016369 FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 1017414..1017806 FT /transl_table=11 FT /locus_tag="BPP0945" FT /product="conserved hypothetical protein" FT /note="Similar to Deinococcus radiodurans hypothetical FT protein Dr0033 SWALL:Q9RYB7 (EMBL:AE001867) (157 aa) fasta FT scores: E(): 8.1e-11, 43.33% id in 120 aa, and to Rhizobium FT meliloti hypothetical protein Ra1232 or Sma2289 FT SWALL:Q92XL2 (EMBL:AE007308) (130 aa) fasta scores: E(): FT 3.7e-10, 32% id in 125 aa" FT /protein_id="CAE40352.1" FT /translation="MSRIEAIVPYPWHPGYTYSPAVRIGNTVYLSGTTATDEQGNLVGP FT GDIEAQTRQIYRKFDLIMRSVGGSLRDIVETTDYVLSLDEYRKTARVRREVFGDPWPAA FT TGVVVAGLIRPDALIEIKAIGVLPSC" FT misc_feature 1017426..1017794 FT /note="HMMPfam hit to PF01042, YjgF family, score 5.1e-21" FT misc_feature 1017803..1018651 FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 2.3e-20" FT CDS 1017806..1018666 FT /transl_table=11 FT /locus_tag="BPP0946" FT /product="probable permease component of branched-chain FT amino acid transporter" FT /note="Similar to Ralstonia solanacearum probable FT amino-acid transmembrane lipoprotein ABC transporter FT Rsp0014 or Rs01986 SWALL:Q8XTU0 (EMBL:AL646076) (293 aa) FT fasta scores: E(): 1.4e-26, 36.67% id in 289 aa, and to FT Streptococcus pneumoniae R6 ABC transporter FT membrane-spanning permease-branched chain amino acid FT transport LivH SWALL:AAK99464 (EMBL:AE008443) (292 aa) FT fasta scores: E(): 7.1e-26, 34.02% id in 288 aa" FT /protein_id="CAE40353.1" FT /translation="MQILIGSLTAGAVYALVALGFVLIYKGTGVVHFGYGEQLTFGAYM FT ALIGQSLLGLPFGLALLFALAASALLGWLIFGLFAGPLRHATLWTRIIATLAIGITLRE FT GLRAYMGPTAWPFPFLLSQQAFEVGGIYLVPANLAIAGIAVLILAALFLFLERTLRGKA FT ILSACENRTGASLVGIRVSRVYLTIWILASLLAAVAGILIAPQLTLSPDMGIIAIKGFT FT AAVIGGFASLPGAVLGGLLLGVLEGLAGAYVSSAMKDVISYAVLILVMLLMPHGLFGKL FT IVKKV" FT misc_feature 1017806..1017850 FT /note="Signal peptide predicted for BPP0946 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.708) with cleavage site FT probability 0.375 between residues 20 and 21" FT misc_feature join(1017812..1017880,1017980..1018048,1018067..1018135, FT 1018202..1018270,1018346..1018414,1018442..1018501, FT 1018505..1018573,1018586..1018654) FT /note="8 probable transmembrane helices predicted for FT BPP0946 by TMHMM2.0 at aa 5-27, 61-83, 90-112, 135-157, FT 183-205, 215-234, 236-258 and 263-285" FT CDS 1018670..1019632 FT /transl_table=11 FT /locus_tag="BPP0947" FT /product="probable permease component of branched-chain FT amino acid transporter" FT /note="Similar to Deinococcus radiodurans branched-chain FT amino acid ABC transporter, permease protein Dr0282 FT SWALL:Q9RXM8 (EMBL:AE001889) (334 aa) fasta scores: E(): FT 1e-20, 33.21% id in 286 aa, and to Rhizobium loti ABC FT transporter, permease protein Mlr5222 SWALL:Q98CB4 FT (EMBL:AP003006) (346 aa) fasta scores: E(): 1.1e-20, 33.63% FT id in 327 aa" FT /protein_id="CAE40354.1" FT /translation="MLAKKLLAYAAAALLFGLAYRYLPEYQLYQVSLIAATAIIVLGLV FT VVCGIAGQISLGQAAFVALGGYGAAILATRLGVPLYAGIPLAAAICALLGYLLGLATLR FT VSGHYLALATMAVTAIVQLAVINLDDLTGGAAGMPMPPLEIAGHVLDNGASLYLVIVPV FT FALSYALVRNLMRSRIGRAFGAVRQGEIAAAAMGVNVLHYKASAFAASGFLGALGGGLL FT GALSSYLDPSQYGITQTVYYLAIAVVGGMASPLGALIGSAIFVFIPEVLQGLQSYLGLV FT FALLLLAFIMLRPAGLASFIVRPRPAPAALSTAPGEATK" FT misc_feature 1018670..1018732 FT /note="Signal peptide predicted for BPP0947 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.935) with cleavage site FT probability 0.742 between residues 21 and 22" FT misc_feature join(1018688..1018741,1018751..1018819,1018832..1018891, FT 1018901..1018969,1018988..1019047,1019114..1019182, FT 1019288..1019356,1019399..1019467,1019486..1019545) FT /note="9 probable transmembrane helices predicted for FT BPP0947 by TMHMM2.0 at aa 7-24, 28-50, 55-74, 78-100, FT 107-126, 149-171, 207-229, 244-266 and 273-292" FT misc_feature 1018736..1019581 FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 3.7e-15" FT CDS 1019629..1020417 FT /transl_table=11 FT /gene="livG" FT /gene_synonym="livF" FT /locus_tag="BPP0948" FT /product="high-affinity branched-chain amino acid transport FT ATP-binding protein" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi high-affinity branched-chain amino acid transport FT ATP-binding protein LivG or LivF or Stm3561 or Sty4251 FT SWALL:LIVG_SALTY (SWALL:P30293) (255 aa) fasta scores: E(): FT 3.3e-34, 45.66% id in 254 aa, and to Streptomyces FT coelicolor putative branched-chain amino acid transport FT ATP-binding protein Sco0709 or Scf42.19C SWALL:Q9L2J9 FT (EMBL:AL137165) (266 aa) fasta scores: E(): 6.5e-37, 49.22% FT id in 258 aa" FT /protein_id="CAE40355.1" FT /translation="MTHPILEVARVTMRFGGIVALNDVSLQVRQGDIHAVIGPNGAGKS FT TLLNVITGIYRPTSGAVRLQGGQLDRLPPHRICRLGVCRTFQNTELFGEMSALENVQVG FT LHLAPPYGMAGALLHGPRYARGERALRAQAMELLELVGLAQDGDTPAAALPFGKQRRLE FT VARALATGPSLLLLDEPAAGLRAAEIEGLNDILLRVRRERGLSILVIDHVMALVMKISD FT RITVLNFGQKIAEGRPEEVRRSPAVIKAYLGERGRDAVLA" FT misc_feature 1019719..1020318 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.6e-44" FT misc_feature 1019740..1019763 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1020410..1021099 FT /transl_table=11 FT /gene="livF" FT /gene_synonym="livG" FT /locus_tag="BPP0949" FT /product="high-affinity branched-chain amino acid transport FT ATP-binding protein" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi high-affinity branched-chain amino acid transport FT ATP-binding protein LivF or LivG or Stm3560 or Sty4252 FT SWALL:LIVF_SALTY (SWALL:P30294) (237 aa) fasta scores: E(): FT 3.5e-28, 47.57% id in 227 aa, and to Thermotoga maritima FT branched chain amino acid ABC transporter, ATP-binding FT protein Tm1139 SWALL:Q9X0M3 (EMBL:AE001771) (239 aa) fasta FT scores: E(): 2.9e-34, 53.6% id in 222 aa" FT /protein_id="CAE40356.1" FT /translation="MHNVDAGYGGKTVLKSVSLTVPQGAIVTLLGANGAGKSTTLKVIV FT GLVQPTAGAIELDGAPMPNRRADQALAAGVALVAEQRELFPSMSVADNLLLGGYLQRDR FT AQARRDYESLLDQFPRLRERAAQPARTLSGGEQQMLAIARALMARPRLLLLDEPSLGLA FT PQLVDDMFRIIRQINANGTTILLVEQNVALALDAASYGYVMETGAITLAGPAAELAHSE FT AIRASYL" FT misc_feature 1020479..1021030 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.7e-49" FT misc_feature 1020500..1020523 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1020803..1020847 FT /note="PS00211 ABC transporters family signature." FT CDS 1021118..1022200 FT /transl_table=11 FT /locus_tag="BPP0950" FT /product="putative NADH:flavin oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2883" FT /protein_id="CAE40357.1" FT /translation="MSALFSALQIGALELPNRIVVSPMCQYSAREGQANEWHMQHLMQL FT ALSGAGLVMVEATAVEPRGRISHGCLGLYSDATEAALARVLAAARAVAAPQARLGIQLA FT HAGRKGAADAPWLGGRPLAPQAGAWRCVAPSATPFAEGWPTPQALDEEGIAGVIEAFGA FT AARRAARLGFDVVELHAGHGYLLHQFQSPLANARTDAWGGTAAGRQRLALAVARRMREA FT LPAGCVLGARITGTDWLPGGLDIEDAVSLAGQLRQAGVDYVCVTSGFVVRGARIPFGPG FT YQAGLAEQVRRRTGMPVRAVGGIADPRQAQAIIETGQADQVALARAFLADPRWVWRAAE FT TLGAPAYYAPQYRLGAGLRA" FT misc_feature 1021124..1022152 FT /note="HMMPfam hit to PF00724, NADH:flavin oxidoreductase / FT NADH oxidase family, score 1.3e-52" FT CDS complement(1022211..1023092) FT /transl_table=11 FT /locus_tag="BPP0951" FT /product="putative lysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2882" FT /protein_id="CAE40358.1" FT /translation="MGNAMLDPVLLRSFVTVVDTGNFTRASEHLHLTQSTVSQHVIRLE FT ENLGCRLLDRGQRHVLPTEEGERLLGYARSILRLADEARESVAAAQGNAVLRLGAPEDF FT MGAALMPVLAPLLARYPLLRLEFDSGLSHQLLRRYRDGELDLLLVKQWEVDADCQAHWP FT EPLCWVAARDGPTLPAGEAVPLAVFPAGALYRQEMTRTLEASGRPWHIRYASTSLAGLV FT AAVGAGLGVSLLPAASAGGELRVLRKRDGFPAVDGLQLGLYARARLGAAGRDLRDALAA FT HCGRRAAAMNQA" FT misc_feature complement(1022241..1022828) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 3.5e-31" FT misc_feature complement(1022892..1023065) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.2e-22" FT misc_feature complement(1022937..1023029) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 1023151..1023846 FT /transl_table=11 FT /locus_tag="BPP0952" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2881" FT /protein_id="CAE40359.1" FT /translation="MFKQGGLGMPIIRFYRCWLAACLVSLGGASVAAGDAGQALLQAAA FT DGDAARVKTLLAGGAPLEARDAQGNTPLLRATQGNHAEAAGALIEAGADVNAQNGIQDS FT AYLLAGARGYRAILALTLAHGADLKSTNRYGGTALIPACERGHVEVVDMLLRAGVDPDH FT VNRLGWTGLLEAIILGDGGTRHQAIVARLIEGGADVNLADGDGVSPLRHARQRGQAAIV FT QLLEAAHAR" FT misc_feature 1023151..1023249 FT /note="Signal peptide predicted for BPP0952 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.458 between residues 33 and 34" FT misc_feature 1023352..1023450 FT /note="HMMPfam hit to PF00023, Ankyrin repeat, score FT 7.4e-07" FT misc_feature 1023550..1023648 FT /note="HMMPfam hit to PF00023, Ankyrin repeat, score 1e-05" FT misc_feature 1023649..1023762 FT /note="HMMPfam hit to PF00023, Ankyrin repeat, score 0.022" FT CDS 1023836..1024345 FT /transl_table=11 FT /locus_tag="BPP0953" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2880" FT /protein_id="CAE40360.1" FT /translation="MRANSNSNPGAATPDDDALLREAIALARANARAGGRPFGALVAKD FT GVVLARGVNRMLADHDPTAHAELLALREAGRALRSARLDGCVVYASGQPCPMCLAAMRM FT SGVARAVYAYSNEQAEPYGLSTAALAAELALPPQRQPGFAFEHRPGAAAPDADLYREWQ FT DGPQAP" FT misc_feature 1023872..1024177 FT /note="HMMPfam hit to PF00383, Cytidine and deoxycytidylate FT deaminase zinc-binding region, score 3.7e-26" FT misc_feature 1024028..1024141 FT /note="PS00903 Cytidine and deoxycytidylate deaminases FT zinc-binding region signature." FT CDS join(1024342..1024956,1024956..1025573) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0954" FT /product="putative membrane transport protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2879" FT /db_xref="PSEUDO:CAE40361.1" FT misc_feature join(1024375..1024434,1024477..1024545,1024582..1024641, FT 1024651..1024719,1024738..1024806,1024849..1024917, FT 1024978..1025046,1025089..1025151,1025170..1025229, FT 1025239..1025307,1025344..1025412,1025422..1025490) FT /note="12 probable transmembrane helices predicted for FT BPP0954 by TMHMM2.0 at aa 12-31, 46-68, 81-100, 104-126, FT 133-155, 170-192, 213-235, 250-270, 277-296, 300-322, FT 335-357 and 361-383" FT misc_feature join(1024387..1024956,1024956..1025519) FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 0.0037" FT variation 1024954 FT /note="A in parapertussis; A(C) in pertussis" FT CDS complement(1025620..1026321) FT /transl_table=11 FT /gene="ribE" FT /gene_synonym="ribC" FT /locus_tag="BPP0955" FT /product="riboflavin synthase alpha chain" FT /EC_number="2.5.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP2874" FT /protein_id="CAE40362.1" FT /translation="MFTGIVQGTATIAGIADRQGLRTFTIDFPAGFCVDLAIGASVSVD FT GVCLTVTHIVSADTATFDVMLQSLDVTTLGGYAVGARVNVERAARDGAEIGGHPLSGHI FT DFAAAVERVRNLDNNRVLRIGIPPAFRKYVFAKGYIAVNGASLTVSEVDREEGWFEVWL FT IPETRRMTVFEEKQAGDALNIEIERSTQVVVDTVREAVQESLGKLQPVLEAILKEKGLS FT LEDFVRPPALK" FT misc_feature complement(1025761..1026021) FT /note="HMMPfam hit to PF00677, Lumazine binding domain, FT score 3.4e-12" FT misc_feature complement(1026058..1026315) FT /note="HMMPfam hit to PF00677, Lumazine binding domain, FT score 1.6e-18" FT misc_feature complement(1026064..1026102) FT /note="PS00693 Riboflavin synthase alpha chain family FT signature." FT CDS 1026586..1027623 FT /transl_table=11 FT /locus_tag="BPP0956" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2873" FT /protein_id="CAE40363.1" FT /translation="MLARRSHTTPLIREFPMKSIQSRLLATWAVCAAAGMLAGPAVASG FT AAYPTKPVTMIVSFPPGGSSDFFTRLVANNLSKMWGQPVVVENRPGAGGNIGAQAGAHA FT PADGYTLYMSSINTHAINPGLYQNPGYDHIKDFAPISEIATVMNVLVVNPSVPAKSVSE FT LLAYFKADPSKAFYASPGAGTSPHLSSELFKRMTDTPITHVPYKGSNAALTDVMAGMVP FT MAIDNLPAALAHIKAGKLRALAVTSPKRSPDLPDVPTMDEAGVKGYDVTTWWALFAPAG FT TLQPIIAKINKDVNALLALPDVKQSIAKQGAEPAPSTPEELARLVEQETARWGKVIKDA FT KVTID" FT misc_feature 1026586..1026714 FT /note="Signal peptide predicted for BPP0956 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.932 between residues 43 and 44" FT misc_feature 1026655..1026723 FT /note="1 probable transmembrane helix predicted for BPP0956 FT by TMHMM2.0 at aa 24-46" FT misc_feature 1026787..1027611 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.6e-112" FT CDS 1027724..1028185 FT /transl_table=11 FT /locus_tag="BPP0957" FT /product="putative AsnC-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2872" FT /protein_id="CAE40364.1" FT /translation="MDATDRKIIAILQENAETPIQSIADQVSLSTTPCWRRVQKLKESG FT VIRRQVALCDPVALNVGVTVFISVKTNQHSQAWLDRFADHVTDIPEVVEFYRMSGDIDY FT LIRVVVPDISTYDTVYKKLIRIADLHDVSSSFAMEQLKYTTALPVDYAS" FT misc_feature 1027796..1028104 FT /note="HMMPfam hit to PF01037, AsnC family, score 5.2e-37" FT CDS complement(1028201..1028749) FT /transl_table=11 FT /locus_tag="BPP0958" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2871" FT /protein_id="CAE40365.1" FT /translation="MRFNATSVAGAAQPQRLHGLAADIDRAVASASAAQTPAAVAGVLA FT AYREPDELLTPAQQAGNAEHYARHLLYAHPLGRFSIVALAWQPGQCTPVHGHFTWCAYA FT VLRGAMQEEQYDWDAAGQCALATRVVARAPGDCVASLAGLDAIHRLRNVGAGTAISLHV FT YGVEGDRVATHVNRIARAA" FT CDS complement(1028891..1030381) FT /transl_table=11 FT /locus_tag="BPP0959" FT /product="putative acid CoA ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2870" FT /protein_id="CAE40366.1" FT /translation="MSLNLGQLTDPNKNPAAIALIDCLDHEAPRIYTHGDLDRLANACA FT RGLLRKGLKTGDAVALMGINRAEFLIAYLGIMRAGMVAVPVNYKLAPDTLSFLLQDCQA FT RLAFVDEPRAALAPAGLDTVRLDTAQWDEFLDPGPFETYAPPPRTTAMILYTSGSTGRP FT KGVQLSHDGQLWTIRSRFLNRKDFDNERFIVAAPMFHMNALANCKFALAAHASIVLLPQ FT FDTHRFIEALGRHEVTWITSVPTMMALVVKEKQALAQIDTARMRYIRMGSAPATDQLYE FT AVRRAFPNAAIAGGYGTTEAGPIVFGPTQGRALPGGGGLGWVLPDVEVRLVDAQGRDAD FT EGELWMRTPANMLGYLNLPDKTRQVLTEDGWYISGDVFRRDSDGCYYFIGRADDMFNCG FT GENIYPGEIEQVIERLPAVMQACVVPVADEIKGHKPVAFVVLQRGMSLSEQDVKSYVLA FT NAPAYQHPRRVFFVESLPLAATSKVDRRALALRAQAEA" FT misc_feature complement(1029113..1030285) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 1.3e-110" FT misc_feature complement(1029890..1029925) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 1030487..1031581 FT /transl_table=11 FT /locus_tag="BPP0960" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2869" FT /protein_id="CAE40367.1" FT /translation="MHASDPFSETYAQARAKFLEAARAAGADIHSYCHDTQRGPDGEAL FT YLDVARLGGAQASRMLVVGCGTHGIEGYSGSAAQTDWLRRLDPSRLPRDTGVLLLLHAH FT NPWGVAHALRFTEENVDLNRNFVDFSQPLPQNPRYAEVHALIARDHWDEQDVEAIFRKL FT SDFRESVGEQVYSDAFNGGQYSHPTGIFYGGTRQQWSNRALREAIATHLAGVRQAAFID FT LHTGIGPERGHVFLCFHEAGSPAYERARRWWGERAVNRDGVTHKAVARYQGLLVDAFVA FT MLPEAETTAVVVEFGTLPRPRMQRASMAARWLWEHQDADGALRATLMRDIREAFYPSAP FT DWRAGVLVQSREIFDRALAGLGQD" FT CDS complement(1031585..1032367) FT /transl_table=11 FT /locus_tag="BPP0961" FT /product="putative ABC transport proteins, inner membrane FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2868" FT /protein_id="CAE40368.1" FT /translation="MKERTKSIVYPLLLLAALLVLWFIANRYLGVPYYVLPPVEGVLAA FT LYRGYVQGDFWGDFGFTLASMAIGYVGGCTAAFIIGVLFAEYRWLERLLYPFVLALQSM FT PKVALAPLILVWFGFGLESKAIMVALVCFFPMFINTAVGLKATDPALLDLMRAFSASRW FT HILTRIKIPSAASHIFAALQISVVLGLIGAVVAEFVSSSKGLGYLINAATTTLDTSTMF FT AALISLAVLGIAGSQLIRALHRKLVFWDRGEAGRTLTE" FT misc_feature complement(join(1031642..1031707,1031768..1031833, FT 1031927..1031992,1032008..1032073,1032113..1032178, FT 1032281..1032346)) FT /note="6 probable transmembrane helices predicted for FT BPP0961 by TMHMM2.0 at aa 7-29, 63-85, 98-120, 125-147, FT 178-200 and 220-242" FT misc_feature complement(1032287..1032367) FT /note="Signal peptide predicted for BPP0961 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.965) with cleavage site FT probability 0.528 between residues 27 and 28" FT CDS complement(1032377..1033165) FT /transl_table=11 FT /locus_tag="BPP0962" FT /product="putative ABC transport proteins, ATP-binding FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2867" FT /protein_id="CAE40369.1" FT /translation="MNQAQHNGSAPVFRVQGLEVTYRSSRGPTTALEGFSTTVAEGEFL FT SILGPSGCGKSTLLKVAAGLLKPSAGVAELRGQAIDGPRRDVGIVFQHATLLPWQNVLD FT NVLLPIRTMGMDIAAGTARAHALLKTMGLEKFEQHYPHELSGGMQQRVGIARGLIHDPS FT LLLMDEPFAALDAMTREAMMVELQRIWSETRKSVMFITHSIPEAVFLSSKVVVLGPRPA FT RVLREIDIDLPFPRTEETLASPKFAQLCAELRSLFSNVAH" FT misc_feature complement(1032512..1033042) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 6.8e-49" FT misc_feature complement(1032692..1032736) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1032998..1033021) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(join(1033177..1033959,1033958..1034251)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0963" FT /product="putative exported protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2866" FT /db_xref="PSEUDO:CAE40370.1" FT variation complement(1033959..1033964) FT /note="(GC)3 in parapertussis; (GC)4 in pertussis" FT misc_feature complement(1034171..1034251) FT /note="Signal peptide predicted for BPP0963 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.990 between residues 27 and 28" FT CDS complement(1034288..1034722) FT /transl_table=11 FT /locus_tag="BPP0964" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2865" FT /protein_id="CAE40371.1" FT /translation="MSQQAARKLEKADIEAIFARSRFISAMNLEILDIDHAGSRFSVRM FT PLQDTYERGAPGTKQFHGGALAALIDVVGDFAIGMLVGGGVPTMNLRIDYLRPAVGDYV FT DGVAVVRKAGKSAAVVDIDILCPAGKLVAIGRGTYVPITG" FT misc_feature complement(1034297..1034659) FT /note="HMMPfam hit to PF02584, Uncharacterized protein FT PaaI, COG2050, score 2.6e-05" FT CDS complement(join(1034719..1035333,1035333..1035737)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0965" FT /product="putative alcohol dehydrogenase (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2864" FT /db_xref="PSEUDO:CAE40372.1" FT misc_feature complement(join(1034726..1035333,1035333..1035713)) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenase, FT score 2.1e-83" FT misc_feature complement(1035205..1035270) FT /note="PS01162 Quinone oxidoreductase / zeta-crystallin FT signature." FT variation complement(1035326..1035341) FT /note="(TGCC)4 in parapertussis; (TGCC)2 in pertussis" FT CDS complement(1035781..1036707) FT /transl_table=11 FT /locus_tag="BPP0966" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2863" FT /protein_id="CAE40373.1" FT /translation="MTSHSTDHDTIGMPNLNLSLDHTGLIVFKLEDARQAFERLGFTLT FT PRSMHAGALTPGGPVVPWGSGNHCAMFRNGYFELLGLVEPDKPSTARRMLDRYEGLHIV FT AMDCESADAMHPQLTAAGVPAPAPATLERDAAFGPANDQTRRARFRNINLDGEAYPEAR FT FIVIEHGTRDVLWQPHLLDHPNGATGLAAMYFAAADLSATLERFQRLLGTPSAHGDAYC FT FELRRGRFWVMSEAAMREHCPVLADGPVHRVAAACIEVRSLPALQEYLQARQIDYVAAP FT YLDGAAPSIWVAPAQASCAALQFIQAR" FT CDS 1036994..1037362 FT /transl_table=11 FT /locus_tag="BPP0967" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2862" FT /protein_id="CAE40374.1" FT /translation="MPQHDKSRLVRIDTGPMINPVAGKPSRPIAGDASFRTVTAFEGGQ FT GKVESGVWESTSGSFQSNTTGYIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYTG FT RWEVDRHVKKIYFVTHLA" FT misc_feature 1037504..1037698 FT /note="HMMPfam hit to PF00403, Heavy-metal-associated FT domain, score 8.9e-23" FT CDS 1037525..1039957 FT /transl_table=11 FT /locus_tag="BPP0968" FT /product="probable cation-transporting ATPase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2860" FT /protein_id="CAE40375.1" FT /translation="MTCASCVGRVERALKAVPGVSDAVVNLATERADVRFAGAPDVGAA FT VQAVEQAGYAVAASTMELAVSGMTCASCVGRVERALKAVPGVRAASVNLATERAHVEIA FT GAVAPQALVQAVAAAGYEARPLDPGGAAADAAARRQAAELQGLRRALIVAAVFALPVFV FT LEMGSHMIPAFHHAVAGSIGVQNSWYIQFVLASIVLFGPGLRFFRKGVPALLRGAPDMN FT SLVAVGTAAAYAYSVIATFAAGVLPPGTVNVYYEAAAVIVALILLGRYLEARAKGNTSE FT AIKRLMGLQAKTARVRRDGATVEVPIAQVAAGDVVEVRSGERVPVDGQVIEGTSFVDES FT MISGEPVPVEKQPGAEIVGGTVNQNGALALRATKVGGDTVLAQIIRMVEQAQGSKLPIQ FT ALVDRITMWFVPAVMAVALATFAIWFVFGPDPALTFALVNAVAVLIIACPCAMGLATPT FT SIMVGTGRAAQLGVLFRKGEALQALKDARVVAVDKTGTLTKGRPELTDLVLAEGFERAA FT VLGKVAAVEAKSEHPIARAIVDAAQVEGARPGAIEAFESITGYGVAARVDGARVEIGAD FT RYMARLELDVAVFAAEAARLGDEGKTPLYAAIDGHLAAMIAVADPIKNTTAAAIRALHG FT LGLKVAMITGDNRRTGEAIARQLGIDEVIAEVLPDGKVDAVKRLKAEHGALAYVGDGIN FT DAPALAEADVGIAIGTGTGTDVAIEAADVVLMSGDLGGVPNAIALSQATMANIRQNLFW FT AFAYNVALIPVAAGVLYPVNGSLLSPVFAAGAMALSSVFVLSNALRLRRFAAPFAAR" FT misc_feature 1037525..1037605 FT /note="PS01047 Heavy-metal-associated domain." FT misc_feature 1037705..1037899 FT /note="HMMPfam hit to PF00403, Heavy-metal-associated FT domain, score 2.3e-26" FT misc_feature 1037717..1037806 FT /note="PS01047 Heavy-metal-associated domain." FT misc_feature join(1037975..1038043,1038086..1038145,1038194..1038262, FT 1038275..1038328,1038737..1038805,1038818..1038886, FT 1039772..1039840,1039850..1039918) FT /note="8 probable transmembrane helices predicted for FT BPP0968 by TMHMM2.0 at aa 191-213, 228-247, 264-286, FT 291-308, 445-467, 472-494, 790-812 and 816-838" FT misc_feature 1038302..1038970 FT /note="HMMPfam hit to PF00122, E1-E2 ATPase, score FT 5.4e-103" FT misc_feature 1038980..1039660 FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase, score 2.3e-31" FT misc_feature 1038998..1039018 FT /note="PS00154 E1-E2 ATPases phosphorylation site." FT CDS 1040006..1040698 FT /transl_table=11 FT /locus_tag="BPP0969" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2859" FT /protein_id="CAE40376.1" FT /translation="MTNPGDGAAGAVDCATLDHWRPRLAAIAAAAGQDDAAHDLGHLRR FT VWGAARAMLQAHPEADALVVLAASYLHDLVNLPKNHPERHLASRQAAAAARERLARAGF FT PAARLDAVAHAIEAHSFSAGIAPRTIEARIVQDADRLDALGPVGLARMFHVGGSLGRAL FT AHPSDPLAAQRALDDSRYTLDHIEAKLARLPHGMQTEAGRRLGEQRLAWLRDFRAAFAA FT QWGGGQLR" FT misc_feature 1040120..1040437 FT /note="HMMPfam hit to PF01966, HD domain, score 4.4e-14" FT CDS join(1040735..1041037,1041037..1041963) FT /pseudo FT /transl_table=11 FT /gene="tyrB" FT /locus_tag="BPP0970" FT /product="aromatic-amino-acid aminotransferase FT (pseudogene)" FT /EC_number="2.6.1.57" FT /note="ortholog of Bordetella pertussis (BX470248) BP2858" FT /db_xref="PSEUDO:CAE40377.1" FT misc_feature join(1041017..1041037,1041037..1041951) FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II, score 3.7e-86" FT misc_feature 1041505..1041540 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS 1042153..1042779 FT /transl_table=11 FT /locus_tag="BPP0971" FT /product="putative isochorismatase" FT /note="Similar to Escherichia coli protein YcaC or B0897 FT SWALL:YCAC_ECOLI (SWALL:P21367) (208 aa) fasta scores: E(): FT 5.4e-69, 82.21% id in 208 aa, and to Escherichia coli FT O157:H7 hypothetical protein YcaC or Z1243 or Ecs0982 FT SWALL:Q8XEB8 (EMBL:AE005279) (208 aa) fasta scores: E(): FT 1.4e-69, 83.17% id in 208 aa" FT /protein_id="CAE40378.1" FT /translation="MGKRYAKLDKNNVAVLMVDHQVGLLSLVRDIDPDKFKNNVLAVAD FT LATYFKLPTILTTSFEDGPNGPLVQELKDQFPEAPYIARPGQINAWDNEDFVKAVKATG FT KKQLLIAGVVTEVCVAFPALSAIEEGYEVFVVTDASGTFNEVTRHSAWSRMEQAGAQLM FT TWFGVACELHRDWRNDIEGLGALFSSHIPDYRNLIAAYTTVKGGK" FT misc_feature 1042174..1042665 FT /note="HMMPfam hit to PF00857, Isochorismatase family, FT score 2.9e-46" FT CDS complement(1042828..1044804) FT /transl_table=11 FT /locus_tag="BPP0972" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1433 SWALL:Q9I3R4 (EMBL:AE004573) (650 aa) fasta FT scores: E(): 2.8e-18, 28.85% id in 662 aa" FT /protein_id="CAE40379.1" FT /translation="MSILRRLLLSLTLAIGIILLGTLVLSINAARGYLSDQLQVQSTDA FT AVSLALSLSQPANNDPVTQELLVSALFDGGHFSLVRLADPQGAVMVERGAQPAASVPAW FT FQALAPLANRAASHAVSDGWRQIGEVTLVANDAYAWETLWASSLRMAALIMGAGVLWAL FT FAFALVRWIEKRLLFQVSEQVRAIDSRASGEQAFARVAEFSGIVDALAQTRERVRATAE FT EQSSHIESLEVELNQDPVTGLANRKYFINEFRRALDEKPADSPALPAPLSSAGGHVLVF FT RQRDLTALNRHMPRQFIDQWLQSVCQRISALVTAQGLAQSLVARLNGSDFAVLLPHCAA FT PQAQVIADLVRAELRTLRIPVGEGGLCRWAMALADYAPGTQFNGVLARLDFGLTRAESA FT GDDHAVLVGPDNADPFSAAGQSAWMDALVTALDQQRFSLAFEPLHAVDGRLVRMEAMLM FT LHNDDAREPIPAMLFIPAAVRLNLSAECDLQAVRLALDWLAAQPGELAVRLSLPSLGKR FT SFLRQLELMLADRRAQVGRLYLEVDAHGLVDREGDVIALERIAAHFGAHVGLRRLAQQF FT GAMSRLHSLPLAYVKLGGGFVGGMSQSPGSRQLAGSVIDTARALNIDVYAEDVPDAATR FT DILASMGVEVMRGPGVTPPPAQE" FT misc_feature complement(1042834..1043550) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00563, EAL domain, score 2.6e-10" FT misc_feature complement(1042960..1043022) FT /note="PS00445 FGGY family of carbohydrate kinases FT signature 2." FT misc_feature complement(1043596..1044114) FT /note="HMMPfam hit to PF00990, GGDEF domain, score 1.2e-05" FT misc_feature complement(1044718..1044804) FT /note="Signal peptide predicted for BPP0972 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.571 between residues 29 and 30" FT CDS complement(1044820..1045503) FT /transl_table=11 FT /locus_tag="BPP0973" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1434 SWALL:Q9I3R3 (EMBL:AE004573) (237 aa) fasta FT scores: E(): 5.2e-31, 46.05% id in 228 aa, and to Vibrio FT cholerae hypothetical protein Vca1081 SWALL:Q9KKM2 FT (EMBL:AE004433) (220 aa) fasta scores: E(): 1.3e-28, 44.28% FT id in 210 aa" FT /protein_id="CAE40380.1" FT /translation="MPLSTRPRKAPRLALAALLSLACGWGGVHALDVDTGKLQSLAASR FT YGARGARAVDDWLQLLRNDTSASEANQLARVNAFWNQRVLSGEDTHIWGRADYWATPLE FT TLGKGAGDCEDYVIGKYFSLISLGVPTEKLRFIYVRARIGGPYSNQQIAHMVLGYYPTP FT NAVPLVLDSLISTIMPANERRDLTPVFSFNADGVYVDGKQASPVDRLSRWRDLLLRMER FT EGLRP" FT misc_feature complement(1045414..1045503) FT /note="Signal peptide predicted for BPP0973 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 30 and 31" FT misc_feature complement(1045435..1045467) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(1045584..1052231) FT /transl_table=11 FT /locus_tag="BPP0974" FT /product="putative hemolysin" FT /note="Similar to Pseudomonas putida calcium-binding outer FT membrane-like protein SWALL:Q9L948 (EMBL:AF182518) (1800 FT aa) fasta scores: E(): 4.4e-26, 25.95% id in 1969 aa, and FT to Pseudomonas aeruginosa hypothetical protein Pa1874 FT SWALL:Q9I2M3 (EMBL:AE004613) (2468 aa) fasta scores: E(): FT 4.7e-14, 22.23% id in 2447 aa" FT /protein_id="CAE36274.1" FT /translation="MANSSPAVVTAVTGRAWIRNSDGSLTELHEGSKVPQGSDIVTASG FT STVALQVDGGMPLVIGEGREVAVTPDLNGGGGDASEAAVALPTTTDSERLLAALQDGRD FT PFDELDPTAAVIGGSGDSAGSSFVRLAKILESTTPMDLAYPNPGRGEDGVRTFLGGATA FT GADDEAAPAPANQAPNALDDLGQTRQGQTLRGNLMLNDSDPDGDPLAVVSVNGRPMTSG FT GLTLPGSGGGTFTVQPDGSYTFVPGNEHQSLGEGQTTTTTITYTITDPSGATSTATLTV FT TVTGTNDAPTLTPGVTLDDQANDDGEAITPVDISGQFEDIDNGDTLTFTADGLPPGLTL FT DPATGIISGTLDNSASQGGNNGVYTVTITATDSGGKSVSQTFEWDVTNPAPTAVADTGA FT TDEDTTLTVTDPAQGVLRNDTDPDNDDLHVSAVNGQPANVGAAIAGDNGGTFTLNADGT FT YTFNPGPDFQNLAKDATAETSITYTVSDGEGGTSSATLTITVAGGNDAPILTPGVTLDD FT QANDDGEAITPVDISGQFTDPDTGDTLTFTADGLPPGLTLDPATGIISGTLDNSASQGG FT ANNDGVYTVEITATDANGASVSQTFEWDVNNPAPTAVADTGTTDEDTTLTVTDPAQGVL FT KNDTDPDNDDLHVSAVNGQPGNVGAAIAGDNGGTFTLNADGTYTFNPGPDFQNLAKDAT FT AETSITYTVSDGEGGTSSATLTVTVTGTNDAPTLTPNVTLDDQANNDGEAITPVDISGQ FT FEDVDNGDTLTFTADGLPPGLTLDPATGIISGTLDNSASQGGANNDGVYTVEITATDAN FT GASVSQTFEWDVNNPAPTAVADTGTTDEDTTLTVTDPAQGVLRNDTDPDNDDLHVSAVN FT GQPANVGVAIAGDNGGTFTLNADGTYSFNPGNAFQHLAQGDSVETSISYTVSDGEGGTS FT TTTLTVTVTGVNDTGAISVNLGADDGKVYEAGLDNAADDSETTGGTITVSASDGISSVT FT IGGQTFTVAQLSGDLSSLPAINTTEGTLTITGYTPSADGKSADITFSYTLNEAQTHSQP FT GNDTITDNIGVTVTGNGDSETSSSFNITIVDDVPTFQTVTDTVLANEAGQTQTGTLEFE FT SGADGVGSLNITGITGLPNDWTTSAMNNASVNIFSPDGTHVFTVTLNTDGTYTVDQLAT FT RPGTTESVNMGSQITNSPQASYDFGIASVTVLHSNQQVQFNGKGSNVPNVSHEFGIGNT FT WFEGGESFQMTFESPMLNFNFGIATVNNPGSVKVTLFDGVNTLTLTVPVNAGDTSLSIT FT QDQIQAAAAAAVPPISFGEFSTATLEGVGGLKVSLTTLSYTNSVPADDMDFTVHVTGTD FT GDGDPAQTEFDVTSGAEAAVVDAFNRVMEDSGDTVGGSVMLSTALAVVSVSVNGTDVTN FT ATAGNPVTFHTGKGTLIVTGYDPQSGALSYTYTEKGQAHNHGNGKNSVHDDFTVTVTDS FT DGQERSGDLVIQILDSVPTAHADLDNVTEGVTQNVSAADGVLANDTSADGWHHAGAIVG FT VAAGDTGAISHGKVGQAIDGLYGKLTLNANGSYSYKANASGQGALPGDGQDVFTYTVRD FT ADGDLTSTTLTINIDQFVAGSNDNNTITGGAGNDVMLGDQGGIKQNVTAGTSYNIALVL FT DLSDSMNDKWGSGSNKPTRLQTAKDALKALLENQLAVHDGEINVSLITFNGSSSALKKS FT ITGLTPENVDEMVDILMGLKASSATPYGAAFDRTTQWFEGQPTVDSEGKPYKNLTFFLT FT DGEPSTEWSYNRDNEFAELAAISDVHGIGIGSGVSTSTLNKYDNTGGYYTGGQETHVNF FT SGNSNANNVNTWDKDGTGTVTKNDNAMRITDTTADGQAFKVTMNPDHRMNVTSAGGASF FT SFALSMGNKNPADKFEWVLMKWDGTQWNEVERGTDASTRTGIHGPGQYGFQFIVNDNSG FT GGQFYATVDTIRSYTSGRTGNSQTVLDPSDLESALIGGSQSTELAPVGNDKLYGGDGND FT ILFGDAINTDNLPWGVAGNPAKPADLPNGSGLEALKDFLFLKNGVQPTDADLHKYISEN FT HALFDVDGDTRGGNDELHGGAGSDELHGGEGKDLLIGGQGDDILYGGDGSDTFKWELND FT QGVVGAPARDTIKDFSNADIADGGDVLDLGELLQGENSGNLTQFLKFSSDGQDTVIQVN FT TQGHVNTQGADQTIVLENIDLTAGGTKDDAAIIQDLLSRHKLQVDQ" FT misc_feature complement(1045920..1045973) FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.00069" FT misc_feature complement(1045974..1046027) FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.0064" FT misc_feature complement(1045980..1046036) FT /note="PS00330 Hemolysin-type calcium-binding region FT signature." FT misc_feature complement(1046250..1046303) FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.049" FT misc_feature complement(1047387..1047440) FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding repeat (2 copies), score 0.081" FT misc_feature complement(1051101..1051124) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1052466..1053131) FT /transl_table=11 FT /locus_tag="BPP0975" FT /product="putative LuxR-family transcriptional regulator" FT /note="Similar to Streptomyces coelicolor putative FT two-component response regulator Sci41.37 SWALL:Q9RJ54 FT (EMBL:AL132648) (223 aa) fasta scores: E(): 6e-10, 32.53% FT id in 209 aa, and to Deinococcus radiodurans DNA-binding FT response regulator Dr0987 SWALL:Q9RVP0 (EMBL:AE001951) (239 FT aa) fasta scores: E(): 3.8e-09, 30.94% id in 223 aa" FT /protein_id="CAE36275.1" FT /translation="MHATPVLLVTDDDLLWQHWRGLDAARWLPARGRGLASLQQWQGQG FT RQLVVLDASVARLPAWDAPQWQELTVGLRLVVASSRPSDAQGTQVFAAGAYGYCHSHAP FT LASLMQVLEVVSGGGIWMGRSLVTRLLKLVDERVPSAPAPWQHDRLTERENAVALRAAH FT GDSNADIAGELGITERTVKAHLSAAFEKLGVSDRLQLALCVHGISTRTPAPRTGTDGR" FT misc_feature complement(1052502..1052693) FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family, score 1.6e-13" FT misc_feature complement(1052559..1052642) FT /note="PS00622 Bacterial regulatory proteins, luxR family FT signature." FT CDS complement(1053153..1054595) FT /transl_table=11 FT /locus_tag="BPP0976" FT /product="HlyD-family secretion protein" FT /note="Similar to Vibrio cholerae secretion protein HlyD FT family Vca1080 SWALL:Q9KKM3 (EMBL:AE004433) (481 aa) fasta FT scores: E(): 1.3e-42, 42.31% id in 449 aa, and to Xylella FT fastidiosa hemolysin secretion protein D Xf2398 FT SWALL:Q9PAU7 (EMBL:AE004049) (473 aa) fasta scores: E(): FT 6.1e-29, 31.16% id in 430 aa" FT /protein_id="CAE36276.1" FT /translation="MQNTQNATLAAPPARQGSLLGALWRVPRGWIMGLFDRLLDGAERK FT DGPSPANYVGNAEWAIRQADARGSRVLLWASLLATLALLLWAGFGYIDEVVRGEGKVVP FT SRQVQIVQSLDGGIVEEILVRPGEAVETGQVLLKIDPTRFASSLGENNAEYLSLLAKAA FT RLKALATGEPFVAPEKVLQEAPAIVEMERNTWQARTSELNATVNVAREQLKQREEELRE FT TIAKRDQASASCGLTSRELQVTRPLLKSGAVSEVDLLRLQRDVARYCGEQKGAEAQIDR FT IGASIKEAQSKLQEAELNIRNQARSELSETNTKLATLREGQAALADRVKLADIRSPVRG FT TVKSLFSNTVGGVVQPGKDIIEIVPTDDTLLLEVRVLPRDIGFLHPDQKAEVKFTAYDF FT AIYGGLEGHVEQIGADTVTDEKGNSFYIVRVRTNSATLGDRKLPIIPGMVAEVHILTGK FT RTVLQYLLKPILRAKENAFTER" FT misc_feature complement(1053198..1053266) FT /note="PS00543 HlyD family secretion proteins signature." FT misc_feature complement(1053360..1054277) FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein, score 3.3e-15" FT misc_feature complement(1054320..1054385) FT /note="1 probable transmembrane helix predicted for BPP0976 FT by TMHMM2.0 at aa 70-92" FT CDS complement(1054598..1056772) FT /transl_table=11 FT /locus_tag="BPP0977" FT /product="probable ABC transporter" FT /note="Similar to Vibrio cholerae toxin secretion FT ATP-binding protein Vca1084 SWALL:Q9KKL9 (EMBL:AE004433) FT (704 aa) fasta scores: E(): 4e-108, 43.59% id in 702 aa, FT and to Pseudomonas aeruginosa probable ATP-binding/permease FT fusion ABC transporter Pa1876 SWALL:Q9I2M1 (EMBL:AE004613) FT (723 aa) fasta scores: E(): 1.3e-80, 37.48% id in 691 aa" FT /protein_id="CAE36277.1" FT /translation="MTTDKFSDPATRSWRADPHASHEDPLLDCLVELTRIHGVPATAQA FT PSSGLPLVEHRLTPALLPRAAARAQMSARTVKRTLDEISPELLPAILLLRGERACLLLG FT TAPGGKYLISHPELGASAVEMDADLLQEDYTGLACFVRPQFRFDARAPEVVKVRSRHWF FT WAAIAENRRLYRDALIAALLINVFAMAMPLFTMNVYDRVVPNNAIETLWVLALGIGLVV FT LFNLVLTTARAHVVDSASKRVDIRLSAQIMERVLDLRMEGRPVSVGSFAANLRSFESIR FT DFIASASITTLVDLPFTLLFLAALAWISPWLIAPPLVAIALILLVSLAAQARMETLTMA FT SYQASAQRNATLVEALAGFEAVKTLNGQGAIQRNWERSTEFIAQNGGKLKLISASTVGF FT VQAMQQLVSVAVVIIGVFQAQESAMSMGGIIAASMIAGRCLTPFGQVAALLMQYQNART FT SLGSIDNYMNLPVERPAGTEFLHRPVFQGGIEFRDVTFAYPGASQPALKKVSFKLAPGE FT KVGVIGRIGSGKTTLEKLALALYQPTEGAVLVDGVDVRQIDPADLRRAIGHVPQDPVLF FT YGSLRHNLAMGAPHADDASILAAANAAGVTEFANVHPNGFDMMIGERGESLSGGQRQSV FT AIARALINDPPILLLDEPSSNMDHQSESQLRKRLKAASADKTILLVTHRTALLDLVERL FT IVIDNGHIVADGPKEQVVEALRQGRVGRGS" FT misc_feature complement(1054673..1055227) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 4.4e-52" FT misc_feature complement(1055183..1055206) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1055444..1056253) FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region, score 0.0011" FT misc_feature complement(join(1055516..1055581,1055783..1055839, FT 1055855..1055920,1056065..1056130,1056176..1056241)) FT /note="5 probable transmembrane helices predicted for FT BPP0977 by TMHMM2.0 at aa 177-199, 214-236, 284-306, FT 311-330 and 397-419" FT CDS complement(1056750..1056965) FT /transl_table=11 FT /locus_tag="BPP0978" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE36278.1" FT /translation="MSASNDNGFSKLDADFVRVLEDLIDALIKNGTLRLTDLPPQAQRK FT LTERKRHRARLAEDLDLLDDDDGQVL" FT CDS complement(1056976..1058445) FT /transl_table=11 FT /locus_tag="BPP0979" FT /product="putative outer membrane protein" FT /note="Similar to Pseudomonas putida agglutination protein FT precursor AggA SWALL:Q52018 (EMBL:M64540) (452 aa) fasta FT scores: E(): 6e-35, 31.4% id in 449 aa, and to Vibrio FT cholerae agglutination protein Vc1621 SWALL:Q9KRL6 FT (EMBL:AE004240) (445 aa) fasta scores: E(): 6.8e-35, 31.6% FT id in 424 aa" FT /protein_id="CAE36279.1" FT /translation="MPTFSFKRTTAIVAVLFAPAAYAQQQAGTTLNQVVEQTLLSNPEI FT QAKYHDFRASMEGQNVARGGLRPQVNAQGFVGKEWRSNVPDRGSYNWSRPGYSVELRQL FT IFDGFRTSNDVKQAGYDKLGRFYELLATSDSTAYSAVQAYVDLQRYREMELLARQNYSL FT HEDTLKQIREHAESGVGRRVDLEQAGGRLALAQTNLMTESANLIDVQQRFQRITGMTPA FT VDLQPVPDVAGKLPQQPANFDDSLRMNPSFLAKQAYLQAANAGVASAKGAFSPKFEFVA FT ATGRDREQPEPQYRDVQSSSVQLVMSYNLYRGGADSARVRQTAEQSYAARDVRDYTCRN FT VQQDLAVAWNNIVRLREQIPFLRDHEIATAKVRNAYREQFQIGQRSLLDLLDTENELFE FT SRRALANGMADLQLAQYRWLALSHKILPALSVQPARDEMPEENAVLETTDEVLKLCNSP FT VPDVSRLAPVQVIYNSGAKPPTFVPADKARP" FT misc_feature complement(1057144..1057731) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 4.4e-19" FT misc_feature complement(1057759..1058355) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 3.6e-23" FT misc_feature complement(1058377..1058445) FT /note="Signal peptide predicted for BPP0979 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.974 between residues 23 and 24" FT CDS complement(1058797..1059987) FT /transl_table=11 FT /locus_tag="BPP0980" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3949 SWALL:Q9HX67 (EMBL:AE004813) (391 aa) fasta FT scores: E(): 1.1e-87, 62.18% id in 394 aa, and to Ralstonia FT solanacearum putative transmembrane protein Rsc3158 or FT Rs00440 SWALL:Q8XUM9 (EMBL:AL646074) (425 aa) fasta scores: FT E(): 6e-96, 65.16% id in 399 aa" FT /protein_id="CAE36280.1" FT /translation="MAAETLAGHGLRIDVYDAMPSVGRKFLLAGRGGLNLTHSEAPQAF FT GARYGARADWVAQWLAQWDAQALRAWAHGLGVETFVGTSGRVFPREMKAAPLLRAWLAR FT LRGAGVGFHMRHRWLGWPAGEPASPQALRFGTPDGALAVRADAVVLALGGASWARLGSD FT GAWTATLREHGVAVAPLRPANCGFEADWSEPMRQRATGQPAKAVAMALAPDGPWRRGEF FT VVTDSGIEGSLVYACSAGLRDAIDVRGAATAWLDLLPDWPAERVAAAVMHPRGARSMSS FT HLQSRLGIKGVKAALLRECAGAEAYADAGLLARRIKALPLRLLRTRPIDEAISSAGGVE FT RAALDARLMLAKAPDVFCAGEMLDWEAPTGGYLLTAVMASGVVAGRGVLAWLRDGL" FT misc_feature complement(1058842..1059894) FT /note="HMMPfam hit to PF03486, HI0933-like protein, score FT 3.2e-73" FT CDS 1060242..1060568 FT /transl_table=11 FT /gene="arsR" FT /locus_tag="BPP0981" FT /product="probable ArsR-family transcription regulator" FT /note="Similar to Ralstonia solanacearum putative arsenical FT resistance operon repressor transcription regulator protein FT ArsR or Rsp1129 or Rs05489 SWALL:Q8XQT9 (EMBL:AL646083) FT (107 aa) fasta scores: E(): 3.3e-14, 46.66% id in 105 aa, FT and to Caulobacter crescentus transcriptional regulator, FT ArsR family Cc1505 SWALL:Q9A859 (EMBL:AE005825) (109 aa) FT fasta scores: E(): 3.8e-14, 52.17% id in 92 aa" FT /protein_id="CAE36281.1" FT /translation="METNAAIKALVVLGHASRLTAFRLLVQAGAEGVAAGQLAQAMGIA FT PSSLSFHLKELVQAGLLEARQDGRFVIYAARYDTMAGLIAYLTDNCCQGAPCDAAPCTR FT EPRA" FT misc_feature 1060269..1060511 FT /note="HMMPfam hit to PF01022, Bacterial regulatory FT protein, arsR family, score 2.4e-06" FT CDS 1060565..1061845 FT /transl_table=11 FT /gene="arsB" FT /gene_synonym="arsF" FT /locus_tag="BPP0982" FT /product="arsenical pump membrane protein" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 arsenical pump membrane protein ArsB or ArsF or FT B3502 or Z4904 or Ecs4374 SWALL:ARSB_ECOLI (SWALL:P37310) FT (429 aa) fasta scores: E(): 3e-115, 72.06% id in 426 aa, FT and to Serratia marcescens ArsB transmembrane efflux FT channel ArsB SWALL:Q9L336 (EMBL:AJ288983) (429 aa) fasta FT scores: E(): 5.5e-118, 74.41% id in 426 aa" FT /protein_id="CAE36282.1" FT /translation="MITAAVIFLFTLTLVIWQPRGLGIGWSACLGAAISLATGVVHWSD FT IPVVWGIVWNATAAFIAIIIVSLLLDEAGFFEWAALHVARWGRGRGRMLFAWIVLLGAA FT VSALFANDGAALILTPIVMAMLAALGFGAGATLAFVMAAGFVADTASLPLIVSNLVNIV FT SADYFGIGFNRYAAVMIPVTLVSVAATLAVLLLRFGASVPARYDASQLKAPRAAIRDPR FT TFRAGWMVLALLLVGFFGLEPLGVPVSATAAAAAAVLLAVAGRGHFISTRKVMREAPWH FT IVVFSLGMYLVVFGLRNAGLTQSLADLFGWFASHGLWAATYGVGLVTALLSSVMNNLPT FT VLVGALSIDASSASGAAREAMVYANVIGSDLGPKITPIGSLATLLWLHVLARKGVRISW FT GYYFKVGIVLTLPVLLLTLGALALRLS" FT misc_feature 1060571..1061839 FT /note="HMMPfam hit to PF02040, Arsenical pump membrane FT protein, score 5.1e-282" FT misc_feature join(1060625..1060693,1060706..1060774,1060844..1060912, FT 1060925..1060993,1061012..1061080,1061090..1061158, FT 1061234..1061302,1061312..1061371,1061408..1061467, FT 1061495..1061563,1061765..1061833) FT /note="11 probable transmembrane helices predicted for FT BPP0982 by TMHMM2.0 at aa 21-43, 48-70, 94-116, 121-143, FT 150-172, 176-198, 224-246, 250-269, 282-301, 311-333 and FT 401-423" FT CDS complement(1061886..1062851) FT /transl_table=11 FT /locus_tag="BPP0983" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 3.3e-27, 33.02% id in 321 aa, and to Comamonas testosteroni FT Orf4 protein SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta FT scores: E(): 2.4e-33, 34.82% id in 313 aa" FT /protein_id="CAE36283.1" FT /translation="MHSFKSALLASAVLALAAGTAGAADTYPGDKPIKIVAAFSPGSAT FT DTSARIIAEELRKDLGANVIVENKPGAQGLIGTEYAVRQPGDGYTLTIASSSLNSINPG FT LFKKLPYDAQKDFTHISRLTTMPMLVLVRGDGDIKTLDQLVQKAKAGSLNYGYGSPGGQ FT VGAVAFNNIAGIRAEGVPYKSQPPALTDLAGGQVDYVLGDLSVATPLLRAGKIRALAVS FT TEQRLPDLPEVPTFAETDYKAFDLVVWVGLSGPAGIPPEVAQRLNDSVNKALARPEIQE FT KFKGLGMTTAPNTLAQQQQFVQSQLDTWGRRMREANIQPE" FT misc_feature complement(1061898..1062710) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.2e-76" FT misc_feature complement(1062783..1062851) FT /note="Signal peptide predicted for BPP0983 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.983 between residues 23 and 24" FT CDS complement(1062895..1064031) FT /transl_table=11 FT /locus_tag="BPP0984" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3592 SWALL:Q9HY34 (EMBL:AE004779) (395 aa) fasta FT scores: E(): 1.5e-75, 55.46% id in 366 aa, and to Rhizobium FT meliloti putative conserved membrane-anchored protein FT Rb0848 or Smb21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa) FT fasta scores: E(): 3.7e-53, 44.03% id in 377 aa" FT /protein_id="CAE36284.1" FT /translation="MQSSDSGGALAGLRVIDASRVLAGPFCGQMLGDHGAEVIKIESPE FT GDECRGFGPPFVDGASAYFRAVNRNKRSMVLDLNSEAGRETLWQLLETADVLIENFKAS FT TLRAWGIADPAEITARFPRLVHCRITGFGDDGPLGQLPGYDAAVQAIAGLLSINGEAGG FT PPVRLGVPVVDLTTGMNAAIAVLLALQARHRTGRGQMADVALYDSAVSVAHPFLTNYLA FT SGKTPGPSGNGHPNIVPYNVYRTRTCPLFIAVANDRLFAKLCAQLGVAELAADARFATN FT GQRVVNREALDAALSQAFAQVDGEPFGQQLLAQNVPAAPILDIAAVAAAPHTAHRRMVV FT QQPDYTGPGIPIKLSHTPAAIRRGPPALGEMAAPPPKR" FT misc_feature complement(1063240..1063812) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.1e-53" FT CDS complement(1064061..1065116) FT /transl_table=11 FT /locus_tag="BPP0985" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE36285.1" FT /translation="MMMQNPQQDERAWRAVAEWYHAYFTGIVLSTVTRRGTPRAAELVY FT EIFCRQRNQRFLAGLEKLGIAHLPPAVAAAQYHYLSNHIGGVAVQYMYESDRKAWIRYS FT APRWIWSGTALCGIPSEVSRAMLAGWHAQNGVTLNNPRLGFVCTKQAADGQSGLEGYYY FT EYDRDLLPHERLRFARNEDAPDFDPAAAPVLPTATWPATRLAKASRNYAMEYVRTALPT FT AVTLWGPDEATHLLRVTAHMIGMQFYHETARALGFEPDGTAAQFARFMQALGQAQGDAC FT EVVEADGEARVRQAGWTLMDDVQDAHPCVAQAWQGLLTGALDAHNHRLALQGTVRRGAA FT GHEFEWRIARA" FT CDS complement(1065131..1065745) FT /transl_table=11 FT /locus_tag="BPP0986" FT /product="putative TetR-family transcriptional regulator" FT /note="Similar to Deinococcus radiodurans transcriptional FT regulator, TetR family Dr2376 SWALL:Q9RRV9 (EMBL:AE002068) FT (197 aa) fasta scores: E(): 2e-07, 27.41% id in 197 aa, and FT to Mycobacterium tuberculosis hypothetical 24.1 kDa protein FT Rv0158 or Mtv032.01 or Mt0167 SWALL:O53641 (EMBL:AL021927) FT (214 aa) fasta scores: E(): 2.1e-06, 29.44% id in 180 aa" FT /protein_id="CAE36286.1" FT /translation="MPLRQVELLDAAARAFTEMGFSAATIDSVADLIGVTKGSVYYYYR FT SKTDLFFAVHRRAMQLNLDAVEPLAADLSVTPARRLWNMAHAHTHLMMAYLPYQRVTVQ FT GIELRLAGRTTAGQRAELEELVQLRDRYESLFRAVVEAGVAAGQFRAAPPALAVKPLLG FT ALNWTTLWYRPREGETEAERESIAHGIADAIVGSVMPLPAI" FT misc_feature complement(1065452..1065484) FT /note="PS00133 Zinc carboxypeptidases, zinc-binding region FT 2 signature." FT misc_feature complement(1065584..1065724) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 4.3e-14" FT CDS complement(1065781..1066914) FT /transl_table=11 FT /locus_tag="BPP0987" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Homo sapiens acyl-coenzyme A FT dehydrogenase, C-2 to C-3 short chain SWALL:AAH25963 FT (EMBL:BC025963) (412 aa) fasta scores: E(): 3.2e-35, 40.33% FT id in 362 aa, and to Mycobacterium leprae probable acyl-CoA FT dehydrogenase Fade25 or Acd or Ml0737 or B1308_f1_34 FT SWALL:ACDP_MYCLE (SWALL:P46703) (389 aa) fasta scores: E(): FT 2e-35, 40.75% id in 373 aa" FT /protein_id="CAE36287.1" FT /translation="MHGIWQPALTQEAAAWRDKAAVLTRERFAPLAAEIDRDQRYPEEH FT LAPLRESGISGMFVPKEYGGGGASLTSVIAVVETVAQGCASSAAILAALSLGAFPVLLG FT GLAREGRAVNFALSERGAGSDAGAVQATAEREGAGWRIRGEKCWLGNGGHSHHFIVFAR FT TGPEGQRNNISAFVVAREADGVVVDFYEDKMGIRGTTTTNLKLDTWVAEDALVGELGHG FT LKLALATLTIGRVVVAAQANGIALCAYAEACDFAVSRETFGRSIIDHQGIGFKLADAMT FT GLSSSRMMVYEAARAYDAGEDISTLGAMAKLLASEVSHTVVDDAMQVLGGRGYVKPSAA FT ERCYRDQRITEIYEGTSEIQRVVLARAIKKSVLAARG" FT misc_feature complement(1065808..1066257) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.6e-58" FT misc_feature complement(1066267..1066569) FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 1.7e-21" FT misc_feature complement(1066531..1066569) FT /note="PS00072 Acyl-CoA dehydrogenases signature 1." FT misc_feature complement(1066573..1066890) FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal domain, score 2e-09" FT CDS 1067129..1067866 FT /transl_table=11 FT /locus_tag="BPP0988" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable FT short-chain dehydrogenase Pa0182 SWALL:Q9I6V0 FT (EMBL:AE004456) (250 aa) fasta scores: E(): 2.4e-42, 59.33% FT id in 241 aa, and to Rhizobium meliloti putative FT dehydrogenasereductase protein Rb0438 or Smb20456 FT SWALL:Q92WA6 (EMBL:AL603643) (248 aa) fasta scores: E(): FT 9.5e-41, 52.65% id in 245 aa" FT /protein_id="CAE36288.1" FT /translation="MEFQGKAALVTGGTRGIGAAIVRRLAQKGAAVAFTSASSDRAAAE FT LARELGASGARILAIKADSRDPLAVRAAVAQTARELGGLDILVNSAGVFPAGPIEDATL FT EQGNDTLAIHAAAVFVASQAALAHMGEGGRIISIGSCFAQRVPYGGVTLYAMSKSALIG FT FTKGLAREVGPRGITVNIVDPGSTDTDMNPADGPTVSAELELMAVKRYAQPDEIAAAVG FT YLAGAESQFITGASLAIDGGFTA" FT misc_feature 1067138..1067857 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 1.3e-67" FT CDS 1067869..1068204 FT /transl_table=11 FT /gene="sugE" FT /locus_tag="BPP0989" FT /product="putative chaperone" FT /note="Similar to Escherichia coli SugE protein or B4148 FT SWALL:SUGE_ECOLI (SWALL:P30743) (105 aa) fasta scores: E(): FT 3.2e-15, 48.51% id in 101 aa, and to Citrobacter freundii FT SugE protein homolog SWALL:SUGE_CITFR (SWALL:O69279) (105 FT aa) fasta scores: E(): 6.6e-16, 52.47% id in 101 aa" FT /protein_id="CAE36289.1" FT /translation="MPMPPHTAWMLLALAGALEIVWALALKQADGLTRLWPSLIGISVA FT MLSLVLLALALRHLPVGTAYAIWVGIGAFGVAVFGTLVLGEPMSWAKLLFLALIGIGVA FT GLRMIEP" FT misc_feature join(1067878..1067946,1067971..1068039,1068049..1068117, FT 1068136..1068195) FT /note="4 probable transmembrane helices predicted for FT BPP0989 by TMHMM2.0 at aa 4-26, 35-57, 61-83 and 90-109" FT misc_feature 1067887..1068165 FT /note="HMMPfam hit to PF00893, Integral membrane protein FT DUF7, score 3.5e-30" FT CDS 1068201..1068743 FT /transl_table=11 FT /locus_tag="BPP0990" FT /product="putative TetR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa2931 SWALL:Q9HZR6 FT (EMBL:AE004719) (196 aa) fasta scores: E(): 4.1e-21, 47.36% FT id in 152 aa, and to Streptomyces coelicolor putative FT transcriptional regulator Scd95a.36C SWALL:Q9KXT8 FT (EMBL:AL357432) (202 aa) fasta scores: E(): 1e-19, 43.87% FT id in 155 aa" FT /protein_id="CAE36290.1" FT /translation="MSAKPRAAPTRKIGRPRAFDRDAALLAAMRTFWTQGYEGTSIQDL FT VQAMGVNKPSLYATFGCKEEIFREAVELYDRVEGRATSQSLADARTAREAVETMLRANA FT RAYTVAEGPRGCMIVLSSLLGAPENARVRAFLADNRLAGEALLQDRLAQGIAQGDLAPT FT ADKLGMIIDAAMLAWPA" FT misc_feature 1068270..1068410 FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 3.6e-11" FT misc_feature 1068782..1070339 FT /note="Low %GC region" FT CDS complement(1068816..1069577) FT /transl_table=11 FT /locus_tag="BPP0991" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE36291.1" FT /translation="MIQQPLDAHWGRTFRARYRQEAEAHADRFLMEFYRDMDYTGQHIE FT DQVDLMEAMLIRTKIIEYSSQKSSQAKMTALVQFMHEEMSTLMLRELIVCADIPCQGGR FT SQLSQKLNALHDKPAPLAVLRNCAWDLHLLRSMDRMSNTSSQAGLGEFYVANLITFDRD FT LADTLRLAELRAYALHRSSPMYFPVYNESLDSWLKARVGEKRMSQLGEFFMEDGINQRA FT RRRSHSHIRALLEEDRRTLIDLFARKKSGQT" FT CDS complement(1069574..1070101) FT /transl_table=11 FT /locus_tag="BPP0992" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE36292.1" FT /translation="MRLERHSKHHVDIEVQLAIQQVGTASNPLKALQAFQHHHALLKDW FT RIVYAAEDGHGPFKLRRQQFSSKGFVSTLFRGESLWVIDHEAATSETINIHMGTATFVD FT SNAASFIQRLAYREAPAAPLLEFCKAMSDAFTIDELSRINPFLYLWEAQRDKGPRHWPA FT CARPWRRFMRSS" FT CDS 1070162..1070335 FT /transl_table=11 FT /locus_tag="BPP0993" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE36293.1" FT /translation="MISRRPAAYRRNADDYAPKRLKAESPDAANPRQTDEYPIAFEFAS FT LDSAANPPRRSV" FT CDS 1070425..1071219 FT /transl_table=11 FT /locus_tag="BPP0994" FT /product="putative plasmid-related protein" FT /note="Similar to unidentified bacterium putative FT polypeptide SWALL:Q52339 (EMBL:Z11878) (154 aa) fasta FT scores: E(): 3.4e-33, 59.33% id in 150 aa" FT /protein_id="CAE36294.1" FT /translation="MPSKLPPLHNQFLDKIRTAVAADPRLTALLAAGSYIHGGFDEYSD FT LDFVIVCDDRSYDEVMAARLEFAQRMGGLLSAFTGEHVGEPRLLICLYGPQLLHVDFKF FT VTLGDLDRLVERPAVLFARDAQAVEARLDAAAIAWPEATPDWFERRAWIWLHYGASKLA FT RGELYEAIGILGFFREQVLGPMLHRRAGRPQRGVRRIEAVAGEAGAQLAATVPRPDRAS FT VRAALLAAAALYVELREDAPPSEAVCGMPEALYGYVGRHVGD" FT misc_feature 1070449..1070763 FT /note="HMMPfam hit to PF01909, Nucleotidyltransferase FT domain, score 0.0013" FT CDS 1071376..1072872 FT /transl_table=11 FT /locus_tag="BPP0995" FT /product="methyl-accepting chemotaxis protein" FT /note="Similar to Escherichia coli methyl-accepting FT chemotaxis protein I Tsr or Ched or B4355 SWALL:MCP1_ECOLI FT (SWALL:P02942) (551 aa) fasta scores: E(): 1.1e-34, 41.69% FT id in 355 aa, and to Ralstonia solanacearum probable FT methyl-accepting chemotaxis transducer transmembrane FT protein Rsc1460 or rs03847 SWALL:Q8XZE1 (EMBL:AL646064) FT (513 aa) fasta scores: E(): 2.1e-35, 43.07% id in 325 aa" FT /protein_id="CAE36295.1" FT /translation="MRTASRLLEDSYRRADRAMLPLLWVLVIVGLCMAPQYGRWTAAVT FT VGVLAAGLPTLLILWRPGKLSTRLAVACGLMALAGLHIHLMSGMTEIHFGIFVLLSLLL FT AYRDWRTILCAAVVIAVHHLSFNFLQQWGYGAICFTEPSLGMVFLHAAYVVVQAAALGW FT LAWRMERAAVAAEELARLSARIGREPGVFDLRFGGSEMESGLGRAFKTTMDAVHRTMSE FT VRETATALSGASRDMMQGNLELEERSRAQAESLARTVASMRDLAANVHANAAHALQAGQ FT LTDQARQSVGTGSAAVAGVATVMGEIQQEAQKISEIIGVIDSIAFQTNILALNAAVEAA FT RAGESGKGFAVVAFEVRALAERSAGAAREIRGLIEGSLEKTGKGFRQADNAAGMIREVV FT ASIDEVAGVVGQIGDAGRAQGTDIEEVNRVVARMDELTRQTADLVAQAASASTALQGQA FT AQLLQAVGVFRLQDGRRSDEPVASTGAESFRPAAPALAGS" FT misc_feature join(1071433..1071486,1071496..1071555,1071568..1071627, FT 1071637..1071690,1071709..1071777,1071805..1071873) FT /note="6 probable transmembrane helices predicted for FT BPP0995 by TMHMM2.0 at aa 20-37, 41-60, 65-84, 88-105, FT 112-134 and 144-166" FT misc_feature 1072090..1072788 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain, score 1.2e-63" FT CDS complement(1073082..1073999) FT /transl_table=11 FT /locus_tag="BPP0996" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa4174 SWALL:Q9HWK7 FT (EMBL:AE004834) (307 aa) fasta scores: E(): 2.8e-42, 39.66% FT id in 295 aa, and to Rhizobium meliloti putative FT transcription regulator protein R00429 or Smc01092 FT SWALL:Q92SG7 (EMBL:AL591783) (296 aa) fasta scores: E(): FT 2.2e-40, 39.23% id in 288 aa" FT /protein_id="CAE36296.1" FT /translation="MALDRIEAMRAFCRIVELGSFTRAADSLGVASTTLSEQIQALERL FT LDIRLLHRSTRKVHPTNEGLAYYQRARKVIEDIDDLEASVSISRAVVKGRVAVEMPTPV FT SIHLVIPALHGFTERYPHIHLDIGCSERVVGLMQEGIDCAIRGGDIADQDLIARRVGQM FT RFCLCAAPAYLDAHPAITHPAQLARHRHLGFRFPGTGKRFVATLRKQRDSHPLDHPPHV FT YFNNGTAVTAGAAAGLGIAALPRAEVRHLLEAGALREILPDWTLTSMPMSVVYPQTHQL FT SARVQVFVQWVAELFEGDGLWKDA" FT misc_feature complement(1073109..1073735) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 5.5e-44" FT misc_feature complement(1073805..1073984) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.4e-19" FT misc_feature complement(1073850..1073942) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 1074108..1074551 FT /transl_table=11 FT /locus_tag="BPP0997" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein Atu4302 or Agr_l_1124 SWALL:Q8U7Z7 (EMBL:AE009358) FT (137 aa) fasta scores: E(): 1.6e-21, 57.36% id in 129 aa, FT and to Rhizobium loti hypothetical protein Mlr0979 FT SWALL:Q98LL3 (EMBL:AP002996) (138 aa) fasta scores: E(): FT 2.2e-21, 51.88% id in 133 aa" FT /protein_id="CAE36297.1" FT /translation="MGIPINRGVIAALCAAALSLAAPAAWAHGGGERVAVNFEEAIPNI FT PGKSLVAVEVAYAPGAASAPHLHAKSAFIYAYVVSGAIESKVNDGPARVYRAGQSWSEP FT PGASHSISRNASRTEPARLLAVFVVDSGDKALTVPVADQGVKP" FT misc_feature 1074108..1074188 FT /note="Signal peptide predicted for BPP0997 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.935 between residues 27 and 28" FT CDS 1074548..1074997 FT /transl_table=11 FT /locus_tag="BPP0998" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT R00543 or Smc02239 SWALL:Q92S80 (EMBL:AL591784) (153 aa) FT fasta scores: E(): 5.7e-23, 44.13% id in 145 aa, and to FT Escherichia coli O157:H7 hypothetical protein Z3974 or FT Ecs3535 SWALL:Q8X921 (EMBL:AE005496) (143 aa) fasta scores: FT E(): 1.6e-20, 48.22% id in 141 aa" FT /protein_id="CAE36298.1" FT /translation="MTMRIDYNQVAPGAAAALAGVYGYVMKSGLAPALVELVYLRVSQI FT NNCAYCLDMHTRDLLNQGVAVEKLALLQAWREAGGLFDARERAALAWAESVTQAAQTGV FT PDQDYQDARAVFGEKELVDLTVAIGLMNAYNRMAIGFRNTPKAAV" FT misc_feature 1074584..1074652 FT /note="1 probable transmembrane helix predicted for BPP0998 FT by TMHMM2.0 at aa 13-35" FT CDS complement(1074999..1076432) FT /transl_table=11 FT /locus_tag="BPP0999" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5136 SWALL:Q9HU48 (EMBL:AE004926) (493 aa) fasta FT scores: E(): 1.9e-27, 30.28% id in 492 aa" FT /protein_id="CAE36299.1" FT /translation="MPMPRSRTVVRLAAAVLVIALAGYAGAILWAEQAWTYSTPPSRTI FT GQAPDGTAAAVTPYCTGITRAGAHTWMLGRDAPGFITRQNAGPQANWLSAQGVSGQPPE FT RDIRARDYSALWRLDTDGSFRIAAAVTDSACLAATPDGASVFLLSTLNSAALRAQRGTQ FT PGVQQTLVFRSDDGGASWQRQEQGLFAQAALVAPHQDIHWIDARRAWSVRDIQDMRADD FT RRKTPAGFPTGWYYSEDQDRTATQVYSETSLFPAPADFGPALHNARLFDPGYDSDQSHL FT AVLDADRALGWYTHWIGYQSAQGRAIAYLTTQVLLQRQGQDWRIAGITRQRGVRIAQLA FT QAPNGAIHAVLTRAGGNATLARLDPATLEWTDERPLPRVFPLGLPAYQTATALRVSNQA FT QVVSLWADHTVPRLLYPWGDAPASISATGEFWTADGGQSWRRLPQRSPDDLLGMDGARN FT VLFWPEDDGKAISGYELAK" FT misc_feature complement(1075110..1075145) FT /note="HMMPfam hit to PF02012, BNR/Asp-box repeat, score FT 21" FT misc_feature complement(1075884..1075919) FT /note="HMMPfam hit to PF02012, BNR/Asp-box repeat, score FT 0.89" FT misc_feature complement(1076352..1076432) FT /note="Signal peptide predicted for BPP0999 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.499 between residues 27 and 28" FT CDS 1076528..1076956 FT /transl_table=11 FT /locus_tag="BPP1000" FT /product="putative membrane protein" FT /note="Similar to Pyrobaculum aerophilum hypothetical FT protein Pae2513 SWALL:Q8ZV09 (EMBL:AE009881) (151 aa) fasta FT scores: E(): 6.3, 30.58% id in 85 aa" FT /protein_id="CAE36300.1" FT /translation="MARESRTNPRAAGRNALGARRFWFVSLAGIVLASGYDILQALQGS FT AAAAQRLVVPVLLLLWLYRGSDWARWILMVMLLGFGVLNMYLGTGMLRYGVQNWLHIYV FT FSAFMVATGLYLALAGKDFARYRSHVAARRARRAASQG" FT misc_feature join(1076588..1076656,1076666..1076719,1076738..1076794, FT 1076822..1076881) FT /note="4 probable transmembrane helices predicted for FT BPP1000 by TMHMM2.0 at aa 21-43, 47-64, 71-89 and 99-118" FT CDS 1077131..1078108 FT /transl_table=11 FT /locus_tag="BPP1001" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 5.1e-43, 39.75% id in 322 aa" FT /protein_id="CAE36301.1" FT /translation="MLGIKRWTRALCGLGMVFSMSAHAAGDFPSQSVRLIVPFPPGGSV FT DIVARTYAQELQGILGQTVVVENRAGANGIIGANAVANAKPDGYTLLLASSGTFTISPA FT LQKVPFDPFNSFDYLGLVVNYANVLLVNTESRYQSLGDLIAQARSQPGAVTFGSSGAGG FT SNHLGGELLAYQAKVKMLHVPYKGNAPAMTDLQGGRIDFMFDITTTAKGHIEGGKVRPL FT AITSAQRNPAFPSVPTTAEAGVAGVEFEGWFGLMAPAGLPQDVARKLVGANQKIVAGAA FT FGQKLKDWGYSVPSTDPQVMRERVKADLDSVTALVKNADIKAND" FT misc_feature 1077131..1077202 FT /note="Signal peptide predicted for BPP1001 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 24 and 25" FT misc_feature 1077272..1078093 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.4e-99" FT CDS 1078110..1079768 FT /transl_table=11 FT /locus_tag="BPP1002" FT /product="probable thiamine pyrophosphate dependent enzyme" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme I large subunit IlvB or B3671 SWALL:ILVB_ECOLI FT (SWALL:P08142) (562 aa) fasta scores: E(): 6.4e-26, 26.34% FT id in 558 aa, and to Pseudomonas aeruginosa probable FT decarboxylase Pa3506 SWALL:Q9HYA3 (EMBL:AE004771) (560 aa) FT fasta scores: E(): 3.9e-79, 45.22% id in 555 aa" FT /protein_id="CAE36302.1" FT /translation="MKYTVGALLADCLAANGVDTVFGIVSVHNMAIMDAIAARPALRMV FT MTRGETGAAHMADGHARARQGLGVVITSTGPGATNAVPGLAEAQFAGSPVLHITGQTAT FT PYLGSRRGTVHDMPSQHDMLRSVGKAVLRVTDADSALAVIQEAIRVCLQAPAGPVSLEI FT PVDLQGREVAMPDPASLKVSPAAAPPPEPAAIAELVRRIKAARRPMLWVGAGAKGAASQ FT LAALVDLGFGVVSSWSGRGVVDDHHPRNLGALNGAGSPAVLDLYRSADLMLVVGSRLRG FT QETDNQAVPLPTPLLRVDIDAARDSLGYANELFVQGDCAEVLDRLLAGLADGLDIDPAF FT DADVRAARQAAIDDYLGRLGPYRDFPAMLRRVLPDDALWVRDITKSNSTWGHRLFPLRK FT AHQNIYPVSAGIGQGLQLGIGAALASPGRKTAVLTGDGGFYFNMTELWTAAQERLDMLV FT IVMNDQGYGAIRGIQDVVCDGRHRYDALGGPAFADIAQLAGAKFWKVEAARDFERIAAE FT AYASPGLCVVEVDMVAIGALPMYYPYIKAGTPRQD" FT misc_feature 1078110..1078160 FT /note="Signal peptide predicted for BPP1002 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.855) with cleavage site FT probability 0.837 between residues 17 and 18" FT misc_feature 1078110..1078637 FT /note="HMMPfam hit to PF02776, Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 6.2e-42" FT misc_feature 1078680..1079129 FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain, score 3.5e-07" FT misc_feature 1079169..1079696 FT /note="HMMPfam hit to PF02775, Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 2.4e-08" FT CDS 1079784..1081211 FT /transl_table=11 FT /locus_tag="BPP1003" FT /product="probable aldehyde dehydrogenase" FT /note="Similar to Rhizobium loti aldehyde dehydrogenase FT Mlr5236 SWALL:Q98CA3 (EMBL:AP003006) (479 aa) fasta scores: FT E(): 7.1e-91, 50.73% id in 475 aa" FT /protein_id="CAE36303.1" FT /translation="MSTQYRSFVAGQWQDGGEPVALYNPSDLQEEAGVYMHAPVEMVNQ FT AVRAAEEALDAWRGLHAMARSRLLDGIADGLVGRRDELAMAIAREQGKPLRDALAEATR FT AADIFRYFASETIRQKGYTYASIRPGVRVEVQRNPVGVVALVTPWNFPVVIPAWKAAAA FT LAYGNTVVMKPSEIAPCGAWILADVMREAGLPAGVFNLVLGAGQAGAALVAHEAVAAVS FT FTGSVATGKRIAAAAAGKRIQLEMGGKNPLIVLDDADLDTAVACAIDGAFLYAGQRCTA FT SSRIIVTEGIHAAFVKRLLAQTASLAVGHALDEATVIGPVVNAEQFEKNRRYADLARQE FT GGTVAGGRALSRPTRGHYFEPCLVTGLDNSATVCREEVFGPFACVLTARDYEHALAIAN FT DTPFGLSSGLCTTSMKHAQHFKAHTKSGLASINTSTSGVDFHVPFGGNGASSYGPREQG FT EFAIEFFTTLRTVYIGD" FT misc_feature 1079817..1081205 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 5.8e-154" FT misc_feature 1080513..1080536 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT misc_feature 1080597..1080632 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS 1081253..1082452 FT /transl_table=11 FT /locus_tag="BPP1004" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum putative FT transmembrane protein Rsc0796 or Rs05041 SWALL:Q8Y194 FT (EMBL:AL646061) (420 aa) fasta scores: E(): 2.9e-77, 54.54% FT id in 385 aa, and to Rhizobium meliloti putative conserved FT membrane-anchored protein Rb0848 or Smb21182 SWALL:Q92V66 FT (EMBL:AL603645) (394 aa) fasta scores: E(): 1.5e-75, 53.35% FT id in 388 aa" FT /protein_id="CAE36304.1" FT /translation="MLHNALRGVKVLDLSRILAGPWCTQNLADMGAEVIKVEQPGSGDD FT TRGWGPPDQTSPDGQASMSAYFMACNRGKQSIELDFSWPDGAQTVRRLAAEADILVENF FT KAGGLAKYGLDYASLARVNPRLIYLSITGYGQSGPMAGKPGYDYVFQGMGGLMSYTGQP FT DGMPGAGPLRTGVAVVDLMTGMYATSAVLAALRQRDQTGQGLPLDICLLDVAVALNANQ FT GANYLVSGKAPQRTGNAHPNCAPYEVFACADGHLILAIGNDGQFARFCKVVGHPEWAGD FT ARYATNSARLEHMPTLRPMLAAALAGAPRQAWTDAFDAAGVPWGPIHTLDEVFAHPQVR FT HRELLQTVRHPVLGEMRLVRNPLLAGAPAHALQACPPLLGEHSAAVLGHDAAAARATEP FT " FT misc_feature 1081481..1082062 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.7e-65" FT CDS 1082469..1083260 FT /transl_table=11 FT /locus_tag="BPP1005" FT /product="probable enoyl-CoA dehydratase" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydratase Crt or Cac2712 FT SWALL:CRT_CLOAB (SWALL:P52046) (261 aa) fasta scores: E(): FT 1.4e-18, 30.12% id in 249 aa, and to Halobacterium sp FT enoyl-CoA hydratase Fad2 or Vng0428G SWALL:Q9HS32 FT (EMBL:AE004998) (256 aa) fasta scores: E(): 4.9e-22, 33.6% FT id in 247 aa" FT /protein_id="CAE36305.1" FT /translation="MTNAVYSGAHAQAVIEDNGIATLTIRDAGVLNILGTPVIESLREA FT LAWLKEQPGARVVILRGASDRAFIAGADIAEMAQLDEARARRFISGLKALCDDVRHLPV FT PVIARIPAWCLGGGLEFALACDLRVCADTAQFSMPEVKVGIPSVIHAALMPRLIGAANS FT AWMLLAGELIDARQALAWGLVTRSVPAEELDSAMRQMALGLAQLGPAVLRQQKRLLRRW FT ENMSVDQAIDDSVAEFGAAFNTGEPQKFMNEFLESKKNRSR" FT misc_feature 1082529..1083035 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 1.2e-38" FT CDS complement(1083269..1084186) FT /transl_table=11 FT /locus_tag="BPP1006" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Ralstonia solanacearum probable FT transcription regulator protein Rsp1267 or Rs05312 FT SWALL:Q8XQG0 (EMBL:AL646083) (294 aa) fasta scores: E(): FT 1.5e-30, 35.15% id in 293 aa" FT /protein_id="CAE36306.1" FT /translation="MRYELTDMRLFVAIADARSLSGGANAVHLTTSAASYRLKNLEQAL FT GVPLFKREARGMELTAEGEFVLKHVRAILAGVETMQGEVSSFARGIRDSVKLFANSSSL FT NGFIVPSLGRFLAANPQVNILLEERPSNTIEAAIAGHEADIGIFAGQSQSVGVLPTRYA FT LDELVIAAPRAHPVAAGGPVKFAEVLDIEFVCMSRASSNFVFLRDMAKLTGKSPRVRIH FT AHTFEALLTMVQAGVGVALVPRSVAAEALDKQRIAVAPLDEPWARRELTLVTASEGPLS FT PIVKQVTAHLLGDPAVSATRPAPG" FT misc_feature complement(1083299..1083925) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2e-35" FT misc_feature complement(1083995..1084174) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.6e-20" FT misc_feature complement(1084040..1084132) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 1084252..1085955 FT /transl_table=11 FT /locus_tag="BPP1007" FT /product="putative membrane protein" FT /note="No significant similarity over the entire length of FT this CDS. Its C-terminal region is similar to parts of many FT hypothetical proteins." FT /protein_id="CAE36307.1" FT /translation="MHVRWNPPILPSTPGNTTNAGKSRFGGRPARGANNVLHNQGRRAQ FT PMQRIVRHVTLGVALAWLALAAGLGWWISQRIVTAQLDRLAASAEYEARTTARVMDRLF FT TEMVSVANMVARQGQVTELAARYRTDPPGAAALTRQQRAALFTRDPLVRKVGDFMNALA FT SDLRYARIYMNNMSDDTVTASNWAEPDSIVGMVYAGRPYLIDALRTGNGYSFGIARLNK FT SPSYFVASRIEDADDTPLGSVTVKFDAPEVALYLTGRHTALIVNRQGRVITASADPFML FT RNVAALLPPGTVLPPDGEEAPGEPMDVRAAGGAGRAEQWLIDGKPYLVRRQPLSGTHYR FT LLTLASLDHLAPMRTQHVWMTTLVAAVGLVVILLSGQAARQMVMRRQDERYAANYDALT FT GLPNRRAVLAELGRLFALAKRLQQRVLVAFIDLDGFKSINDTYGHEIGDKFLVEAGRRM FT SAGLRASDTLGRWGGDEFVVVGLVPASASGGPDAAAAAMRERLAPLLVGAYRFADCGFD FT YPGASLGVVSVDPSASSVQAVLKEADRLMYADKQARRAAGVMDGEGAVPA" FT misc_feature join(1084399..1084467,1085320..1085379) FT /note="2 probable transmembrane helices predicted for FT BPP1007 by TMHMM2.0 at aa 50-72 and 357-376" FT misc_feature 1085416..1085919 FT /note="HMMPfam hit to PF00990, GGDEF domain, score 1.5e-43" FT CDS complement(1086008..1086286) FT /transl_table=11 FT /locus_tag="BPP1008" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE36308.1" FT /translation="MRGAAAGAAAGAAVAGVRGRQHEEVYDRVDDDVKQEYRQNKAKDG FT AAAGMVVGGSRQRQDRRQDRRNDAQQGTAASSAYSSCMQQRGYQVTP" FT CDS 1086663..1086914 FT /transl_table=11 FT /locus_tag="BPP1009" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE36309.1" FT /translation="MNTLCLALRPLLAAAACASMAACADNPPRHTELDYRSPPAAATQG FT ANRAPGSSGQRLTIQSGEGEKLNLPWFIQDTQDWVNSH" FT CDS 1086980..1087771 FT /transl_table=11 FT /gene="aadA4" FT /locus_tag="BPP1010" FT /product="adenyltransferase" FT /note="Similar to Escherichia coli adenyltransferase AadA4 FT SWALL:Q9XB49 (EMBL:Z50802) (262 aa) fasta scores: E(): FT 3.2e-55, 59.76% id in 256 aa, and to Acinetobacter FT genomosp.3 aminoglycoside 3'-adenylyltransferase AadA1 FT SWALL:Q93T37 (EMBL:AF369871) (263 aa) fasta scores: E(): FT 6e-54, 55.95% id in 252 aa" FT /protein_id="CAE36310.1" FT /translation="MDQDPALSIEPQLSRACAMLERHLAPHIVAIHLFGSAVDGGLRPH FT SDIDLLVTVDAPPDASALQALMRELLDVSAFPGASASLRALEVTVLALADVVPWRYPAR FT RLMQFGEWLRDDIRAGVFEAPVFDHDLAILLTKARAHSVALRGPAAQALFAPVPGADLA FT RALRDTVAQWNTPQDWAGDERNIVLALARGWYTAATGGIASKDAAAAWLLERIAPEHRP FT VLRMARASYLGQAADGLGRCADAVAAFIACARGEIERLCAD" FT misc_feature 1087004..1087318 FT /note="HMMPfam hit to PF01909, Nucleotidyltransferase FT domain, score 4.9e-12" FT CDS complement(1087777..1089222) FT /transl_table=11 FT /locus_tag="BPP1011" FT /product="probable amidase" FT /note="Similar to Streptomyces coelicolor putative amidase FT Scbac17f8.16 SWALL:Q93J72 (EMBL:AL596030) (467 aa) fasta FT scores: E(): 4.9e-64, 44.77% id in 469 aa, and to Rhizobium FT loti Glu-tRNA amidotransferase, subunit A Mlr6081 FT SWALL:Q98AB0 (EMBL:AP003008) (478 aa) fasta scores: E(): FT 1.6e-63, 43.42% id in 456 aa" FT /protein_id="CAE36311.1" FT /translation="MDLACPTPHDLAYASAAELARLYRARAVSPLDHARAVLDMVDRWN FT PVVNAYCHLDRTLTLQQAAASEARWMRDAPLGPADGVTYGIKDILLARGAPTGYGSRAA FT CVAQPATEDAPAAACLREAGGVFVGKTTTSEFGWKGTADNLLTGATRNVWDTRLTSGGS FT SGGAACAAAAGMGTLQVGTDGGGSTRIPASFCGIAGMKATFGRVPAWPAGPMLTLSNVG FT PMARNVADLACLQRIIGQPDPRDWHAVPAPRHERAPPASLQGLRIGLHLDRDACDPEVA FT AVIGQAAERLAAHGARLIDTRLPLDGCDNLIRAHWQAGAAWLAAQIPPQRQALLDPGLQ FT AAAAHGRELPLPDYYRAMIGRQKLGETMAAHLAQFDLVLTPTVPILPFAAGREAPEDAA FT SQDWLDWNPYTYPFNLTRHPAISLPAGFSAAGLPVGLQLAAGLYQDEWLLGVAALVEAC FT LGVAGGVPAGLREGTRQAVRARA" FT misc_feature complement(1087876..1089129) FT /note="HMMPfam hit to PF01425, Amidase, score 5.4e-75" FT misc_feature complement(1088830..1088853) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1089228..1090514) FT /transl_table=11 FT /locus_tag="BPP1012" FT /product="putative membrane protein" FT /note="Similar to Bacillus halodurans C4-dicarboxylate FT transport system Bh2671 SWALL:Q9K9H6 (EMBL:AP001516) (426 FT aa) fasta scores: E(): 5.2e-59, 42.31% id in 423 aa, and to FT Pasteurella multocida hypothetical protein Pm0273 FT SWALL:Q9CNZ7 (EMBL:AE006062) (427 aa) fasta scores: E(): FT 8.5e-56, 39.9% id in 421 aa" FT /protein_id="CAE36312.1" FT /translation="MQDALLLFSLMFALFLAGIPIAFSLLLCGAIFLLATGLRPLIVVP FT QRVMTGLDSFPLLAIPLFILMGNLMEKAGLSRRLIDLIDMLVGRVHGALGYVTILACAM FT FGALTGSAPATVAAIGAIMMPAMIAQKYPPQLATGVTASAGALGNIIPPSIALILYGAT FT VNVSIPKLFVANIVPGLLMALAFMATNFLLARRLRVPRQPARACTAGQAIRIVWRAVPP FT LLMPVVILGGIYGGVFTPTEAAAVGVALSLALGLCYRQFTPRNLWRVMVGSVETSSMVG FT FILGGAGIFGWILASARIPSLLATELAPVLDSQFLYLALLTVFLLLVGCIMDAGASIII FT LAPILVPIGLMLGVDPIHLGVVFCVNLVVGFFTPPFGLNLFTTVSVSRQPYEVVVRGVL FT PFVLAAIAVLFILAYVPGLSLALVRLMEN" FT misc_feature complement(join(1089270..1089335,1089372..1089437, FT 1089453..1089509,1089525..1089590,1089636..1089701, FT 1089741..1089791,1089804..1089869,1089933..1089998, FT 1090029..1090094,1090158..1090223,1090305..1090370, FT 1090410..1090475)) FT /note="12 probable transmembrane helices predicted for FT BPP1012 by TMHMM2.0 at aa 13-35, 48-70, 97-119, 140-162, FT 172-194, 215-237, 241-258, 271-293, 308-330, 335-354, FT 359-381 and 393-415" FT misc_feature complement(1089642..1090118) FT /note="HMMPfam hit to PF00597, DedA family, score 2.5e-15" FT misc_feature complement(1090428..1090514) FT /note="Signal peptide predicted for BPP1012 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.974) with cleavage site FT probability 0.306 between residues 29 and 30" FT CDS complement(1090515..1091018) FT /transl_table=11 FT /locus_tag="BPP1013" FT /product="putative membrane protein" FT /note="Similar to Salmonella typhi possible membrane FT transport protein Sty3819 SWALL:Q8Z2V8 (EMBL:AL627279) (171 FT aa) fasta scores: E(): 2.5e-09, 33.57% id in 140 aa, and to FT Bacillus halodurans C4-dicarboxylate transport system FT Bh0702 SWALL:Q9KEZ7 (EMBL:AP001509) (177 aa) fasta scores: FT E(): 3.5e-09, 31.15% id in 138 aa" FT /protein_id="CAE36313.1" FT /translation="MKRALLAGLARTSQGCDVLCKALAAAFLAIIAIAATAQVVGRYLL FT GYSPPWIEELTRYSSIWMTMLGAAVLVRANGHAVIDILVARFEGRARRAHAAFVNGAIL FT AAAAILVVQGIDIIAIVHNQLSPAMRISMGYVYAALPAGGLFIAVQSLAALARDRSAAP FT DAEI" FT misc_feature complement(join(1090554..1090619,1090665..1090730, FT 1090770..1090835,1090896..1090961)) FT /note="4 probable transmembrane helices predicted for FT BPP1013 by TMHMM2.0 at aa 19-41, 61-83, 96-118 and 133-155" FT misc_feature complement(1090908..1091018) FT /note="Signal peptide predicted for BPP1013 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.933) with cleavage site FT probability 0.350 between residues 37 and 38" FT CDS complement(1091050..1091916) FT /transl_table=11 FT /locus_tag="BPP1014" FT /product="putative extracellular solute-binding protein" FT /note="Similar to Escherichia coli putative ABC transporter FT periplasmic binding protein yiao precursor yiao or b3579 FT SWALL:YIAO_ECOLI (SWALL:P37676) (328 aa) fasta scores: E(): FT 1.8e-27, 32.82% id in 262 aa, and to Agrobacterium FT tumefaciens Agr_l_3344p agr_l_3344 SWALL:AAK90249 FT (EMBL:AE008369) (282 aa) fasta scores: E(): 6.7e-27, 32.61% FT id in 279 aa" FT /protein_id="CAE36314.1" FT /translation="MYHHLAAGFAERVARHTNGAVKVQVLGGAQLGGERDVAEGMQLGS FT IDMSVIASFALGAFEKKAMIFDLPYLFKDYPTAFQALDSSFTDGIEADLEKTGLKVLGW FT GHGGFRNLYNSKQPIRTLADLKDMKVRMPENPIYVDTWRALGVNVTSMAYPELFTGLQQ FT RTIDGAENPTALYYTSRFYEAAKYLSKTEHVYVAIPIVVSARIWTSLAPEQQAAFQQAA FT DEAIAAQRQFLLATEAATEKKLAEAGVAINADVDKAAFRQAAAPVYERYRNTIDPELVN FT RAQALAQ" FT misc_feature complement(1091092..1091916) FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 2e-83" FT CDS complement(1092103..1092723) FT /transl_table=11 FT /locus_tag="BPP1015" FT /product="2-hydroxychromene-2-carboxylate isomerase" FT /note="Similar to Pseudomonas putida FT 2-hydroxychromene-2-carboxylate isomerase NahD FT SWALL:NAHD_PSEPU (SWALL:Q51948) (203 aa) fasta scores: E(): FT 2.4e-11, 29% id in 200 aa, and to Agrobacterium tumefaciens FT StrC58 2-hydroxychromene-2-carboxylate isomerase nahD FT SWALL:AAL46112 (EMBL:AE008963) (197 aa) fasta scores: E(): FT 1.3e-24, 36.26% id in 193 aa" FT /protein_id="CAE36315.1" FT /translation="MHIDYYFSVVSDWAYFGGERLERLARRHGATIRHKPMQLSAVYAQ FT TGGILLQQRSTQRQAYRVTELERWRDHLGIPITLHPRHYPVDDIPASCAILAAQELGMA FT TGDYANAVLRAIWTQERDISDPRTLDEIARGLGLDADAILQLAQAQHIRQRLADNTREA FT IGHGVFGSPFYLCNGHLFWGQDRLPFLEDVLAGRVGAYAGAPA" FT misc_feature complement(1092136..1092720) FT /note="HMMPfam hit to PF03046, FT 2-hydroxychromene-2-carboxylate isomerase family, score FT 4.3e-27" FT CDS complement(1092774..1093193) FT /transl_table=11 FT /locus_tag="BPP1016" FT /product="putative cyclase" FT /note="Similar to Streptomyces peucetius methylaklanonic FT acid cyclase DnrD SWALL:Q54808 (EMBL:L40425) (145 aa) fasta FT scores: E(): 0.024, 25.18% id in 135 aa, and to FT Streptomyces sp DauD protein dauD SWALL:Q55215 FT (EMBL:L35154) (161 aa) fasta scores: E(): 0.03, 25.18% id FT in 135 aa" FT /protein_id="CAE36316.1" FT /translation="MTWRVDLIAQHIEVENRHLMNEMLATLADENPVRDEVAGRVYRGK FT DQVAARYAELWQAFPDFNVRPVRYTEQEGIVVMEAIYTGTHHGAYLGLPGSGKSFNVRL FT VNVFGFDDERIESETIYIDLAGQLRQLGITAIPRN" FT misc_feature complement(1092897..1092920) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1093426..1093953) FT /transl_table=11 FT /locus_tag="BPP1017" FT /product="conserved hypothetical protein" FT /note="Similar to Haemophilus influenzae hypothetical FT protein Hi0243 SWALL:Y243_HAEIN (SWALL:P43971) (172 aa) FT fasta scores: E(): 5.2e-09, 27.21% id in 169 aa, and to FT Neisseria meningitidis hypothetical protein Nma1732 FT SWALL:Q9JTK9 (EMBL:AL162757) (169 aa) fasta scores: E(): FT 6.9e-09, 28.9% id in 173 aa" FT /protein_id="CAE36317.1" FT /translation="MSSAFPAPAPDFDQPLQLLAACHGRIERQCATLERLAAHLRAQGS FT DDAARTAAASVMRYFDSAAVKHHEDEEQDLFPALIESMAGSDAVCLRQLVGSLTDEHRA FT LGSAWRRVREVLQQVADGQGAAFAPGQAEDFIAAYRAHLRREDEELLPLAERLLDDGAL FT ADMAQAMRDRRS" FT CDS complement(1093991..1094281) FT /transl_table=11 FT /locus_tag="BPP1018" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc2571 or Rs00770 SWALL:Q8XWA3 (EMBL:AL646070) (89 FT aa) fasta scores: E(): 9.2e-23, 69.31% id in 88 aa" FT /protein_id="CAE36318.1" FT /translation="MSPSARRWRLIGADGQPLLSAEPGTLGGHRRGRLYGRLDCRAAAR FT ALARGGYAAQRVFFLDEASAVAAGYRPCAVCMPQAYAAWKTARAHKRAAME" FT CDS complement(1094278..1094913) FT /transl_table=11 FT /locus_tag="BPP1019" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc2567 or Rs00763 SWALL:Q8XWA7 (EMBL:AL646070) FT (250 aa) fasta scores: E(): 3.3e-13, 38.43% id in 242 aa, FT and to Caulobacter crescentus hypothetical protein Cc0708 FT SWALL:Q9AA98 (EMBL:AE005746) (234 aa) fasta scores: E(): FT 3.8e-11, 36.48% id in 222 aa" FT /protein_id="CAE36319.1" FT /translation="MTPVLTPGILQAGAAAIAALDRAALHARLDRDGWALLPALFDAPA FT IAALLACAPPQGAGSAAGVFAPLRAALYAQLAPLANAWAQALQTGWRYPASAPAGVPPD FT IRLDLVEAGHARPLTQHEPAPDVFPLQLVVLLSDPKRDFAGGELVLTEQRPRMQSRPIV FT IPLRQGDAALIPTAHRPCRGAHGFYRASLRQAISPVRAGRRVGLALLP" FT CDS complement(1094910..1095986) FT /transl_table=11 FT /gene="ada" FT /locus_tag="BPP1020" FT /product="O6-methylguanine-DNA methyltransferase" FT /EC_number="2.1.1.63" FT /note="Similar to Escherichia coli Ada regulatory protein FT Ada or B2213 SWALL:ADA_ECOLI (SWALL:P06134) (354 aa) fasta FT scores: E(): 1e-68, 55.23% id in 344 aa, and to Pseudomonas FT aeruginosa O6-methylguanine-DNA methyltransferase Ada or FT Pa2118 SWALL:Q9I1Z7 (EMBL:AE004639) (358 aa) fasta scores: FT E(): 1.6e-103, 77.36% id in 349 aa" FT /protein_id="CAE36320.1" FT /translation="MNLPVRPAPAYATPEARWAAVQARDPAADSHFVYAVRTTGVYGRP FT SSAARLPRRENVEFFDNAEAARAAGYRPSRHNAADRTVTARQHSALVAAACRHIEQADT FT PPTLEALAAHVGLSPFHLHRLFKAETGLTPKAYASAQRARRLRAELGESASVTAAIYDA FT GFNSNSRFYEASQQLLGMAPRAYRAGGANARIRFAVAQCALGAILVAQSQLGICAILLD FT DDPDYLVRQLQDLFPRATLIGGDAGFERLVAEVVGFVEAPALGLNLPLDVRGTAFQERV FT WQALREVPPGATVSYTDIAERIGAPKAVRAVAQACAANRIAVAIPCHRVVRRDGDLSGY FT RWGVDRKRELLRREAATP" FT misc_feature complement(1094919..1095167) FT /note="HMMPfam hit to PF01035, 6-O-methylguanine DNA FT methyltransferase, DNA binding domain, score 4.2e-39" FT misc_feature complement(1094994..1095014) FT /note="PS00374 Methylated-DNA--protein-cysteine FT methyltransferase active site." FT misc_feature complement(1095423..1095560) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.31" FT misc_feature complement(1095570..1095704) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 1.1e-09" FT misc_feature complement(1095747..1095947) FT /note="HMMPfam hit to PF02805, Metal binding domain of Ada, FT score 7.1e-21" FT CDS complement(1096045..1096704) FT /transl_table=11 FT /locus_tag="BPP1021" FT /product="DNA-3-methyladenine glycosylase 1" FT /EC_number="3.2.2.21" FT /note="Similar to Schizosaccharomyces pombe FT DNA-3-methyladenine glycosylase 1 Mag1 or Spapb24d3.04C FT SWALL:MAG1_SCHPO (SWALL:Q92383) (228 aa) fasta scores: E(): FT 1.6e-30, 44.16% id in 197 aa, and to Ralstonia solanacearum FT probable DNA-3-methyladenine glycosylase protein AlkA or FT Rsc2569 or Rs00766 SWALL:Q8XWA5 (EMBL:AL646070) (212 aa) FT fasta scores: E(): 2.2e-53, 69.08% id in 207 aa" FT /protein_id="CAE36321.1" FT /translation="MTAATLSPAAYAHAERFLAGLDADWRGHVAATGPCLHRPLPAREP FT YEALVRAIAYQQLHARAGDAIVGRLLALFPGGAFPAPGQLLAADPAALRACGFSAAKTQ FT TILGIAQAARDGVVPDRRAARRMSDQALVERLTTLRGVGRWTVEMLLIYTLARADILPA FT DDFGVRDGYRRLKGAAATPTARQMRNIGQAWGPYRTLAAWYLWRVPPEARIRAQET" FT misc_feature complement(1096069..1096569) FT /note="HMMPfam hit to PF00730, HhH-GPD superfamily base FT excision DNA repair protein, score 0.015" FT CDS complement(1096761..1097264) FT /transl_table=11 FT /locus_tag="BPP1022" FT /product="putative glyxalase" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc0107 or Rs00977 SWALL:Q8Y374 (EMBL:AL646057) FT (159 aa) fasta scores: E(): 3.4e-26, 50% id in 142 aa, and FT to Mycobacterium tuberculosis hypothetical protein Rv0887c FT or Mt0910 or Mtcy31.15C SWALL:Y887_MYCTU (SWALL:Q10548) FT (170 aa) fasta scores: E(): 2.8e-21, 47.02% id in 151 aa" FT /protein_id="CAE36322.1" FT /translation="MATAVKPIPEGMHTLTPHIICAGAARAIDFYIKAFGAVEMARLAG FT PDGRLMHGAVRIGDSTLMLMDAFPEWDPPDPKALNGTPVVLHLYVEDVDAAHAQAVAAG FT ATSVMPVTDMFWGDRYGQVRDPFGHLWSIATHKQDLTPEQIAEAARNAPPCPDVAEQAG FT KARE" FT misc_feature complement(1096839..1097207) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily, score 0.00024" FT CDS complement(1097432..1098580) FT /transl_table=11 FT /locus_tag="BPP1023" FT /product="putative phosphoesterase" FT /note="Similar to Campylobacter jejuni hypothetical protein FT Cj0846 SWALL:Y846_CAMJE (SWALL:Q9PP77) (374 aa) fasta FT scores: E(): 4.6e-19, 29.65% id in 381 aa, and to FT Streptomyces coelicolor putative integral membrane protein FT Sc5g8.17 SWALL:Q9KZ97 (EMBL:AL353872) (436 aa) fasta FT scores: E(): 1.4e-34, 44.05% id in 286 aa" FT /protein_id="CAE36323.1" FT /translation="MSLRRSAFFIRFLTLGALAHVYVGARLIPDAGLPAAGVAAAILAL FT CASCVLIPLGMASHASGRQPWGDRLAAVGLVAMGYFSSLFVLTVLRDAALLLAWLAALP FT VPMDALRAASAPAVPLLALAATLLGLANARRRARVVTVDVPIDALPAALQGYTIVQISD FT LHVGPTIKRRYLQAVVDAVNAAGPDLVAVTGDVVDGPVAHLAPHTQPLAALRAPDGVYL FT VTGNHEYYSGAAAWVQEFRRLGLCVLQNEHRVVRRGDAALVVAGVTDYGAAAFDASQRS FT NPAQALAGAPAKAAVRLLLAHQPRSAAAAAPLGYTLQLSGHTHGGQFLPWNWFVRLQQP FT FTAGLHRYGPMWVYTSRGTGYWGPPKRLGAPSEITRVRLVRA" FT misc_feature complement(1097603..1098115) FT /note="HMMPfam hit to PF00149, Calcineurin-like FT phosphoesterase, score 2.3e-16" FT misc_feature complement(join(1098188..1098253,1098314..1098370, FT 1098410..1098475,1098506..1098556)) FT /note="4 probable transmembrane helices predicted for FT BPP1023 by TMHMM2.0 at aa 83-100, 110-132, 145-164 and FT 184-206" FT CDS 1098870..1100258 FT /transl_table=11 FT /gene="cioA" FT /gene_synonym="qxtA" FT /locus_tag="BPP1024" FT /product="cytochrome oxidase subunit I" FT /note="Similar to Pseudomonas aeruginosa cyanide FT insensitive terminal oxidase CioA or Pa3930 SWALL:O07440 FT (EMBL:Y10528) (488 aa) fasta scores: E(): 6.4e-124, 67.94% FT id in 468 aa, and to Rhodobacter sphaeroides quinol oxidase FT subunit I QxtA SWALL:O86080 (EMBL:AF084032) (465 aa) fasta FT scores: E(): 5e-101, 56.8% id in 463 aa" FT /protein_id="CAE36324.1" FT /translation="MMSSEALLLARIQFGFTISFHIIFPAITIGLASYLAVLEGCWLRT FT RDTVYRDLYHFWSKVFAVNFGMGVVSGLVMAYQFGTNWSAFSEFAGSITGPLLAYEVLT FT AFFLEAGFLGVMRFGWSRVGPRLHFFSTIMVALGALVSATWILASNSWMQTPAGYEIVD FT GRVVPVDWLAVIFNPSFPYRLAHMGIAAFLATALLVAASGAWHLLRGHRTPAVCRMFAM FT ALGMLAIAAPLQAVVGDMHGINTLKHQPAKIAAIEGHWENVPGEGVPLHLFGVPDMQAE FT TTRYALSVPRLGSLILTHSLDGQFPGLKSYPPADRPNATVVFWSFRVMVGLGLLAIALA FT AWAGWARLRGRLYDSRALQRFALAMGPSGLVAILAGWYTTEIGRQPWIVQGLMRTAEAA FT TPHGVPALTLTLLLFVFVYLIVFGAGIVYVLRLIARGPSGSAPAGGEPGLVQRPLAAAQ FT QGGL" FT misc_feature 1098894..1100207 FT /note="HMMPfam hit to PF01654, Bacterial Cytochrome FT Ubiquinol Oxidase, score 3.4e-212" FT misc_feature join(1098912..1098980,1099035..1099103,1099146..1099214, FT 1099248..1099316,1099425..1099493,1099512..1099580, FT 1099836..1099904,1099938..1100006,1100091..1100159) FT /note="9 probable transmembrane helices predicted for FT BPP1024 by TMHMM2.0 at aa 15-37, 56-78, 93-115, 127-149, FT 186-208, 215-237, 323-345, 357-379 and 408-430" FT CDS 1100260..1101267 FT /transl_table=11 FT /gene="cioB" FT /gene_synonym="qxtB" FT /locus_tag="BPP1025" FT /product="cytochrome oxidase subunit II" FT /note="Similar to Pseudomonas aeruginosa cyanide FT insensitive terminal oxidase CioB or Pa3929 SWALL:O07441 FT (EMBL:Y10528) (335 aa) fasta scores: E(): 7.9e-92, 68.06% FT id in 335 aa, and to Rhodobacter sphaeroides quinol oxidase FT subunit II QxtB SWALL:O86081 (EMBL:AF084032) (335 aa) fasta FT scores: E(): 1.7e-65, 54.03% id in 335 aa" FT /protein_id="CAE36325.1" FT /translation="MGVDLSLIWAIIILFGVMMYVVMDGFDLGIGVLFPLLPGKSDRDV FT MMNTVAPVWDGNETWLVLGGAGLLAAFPRAYAVVLGALYLPLVFMLLGLVFRGVAFEFR FT FKADEHHRPFWDRAFIGGSVAAAFFQGATLGAYLQGIELVGGAYQGGPWGWVTPFSLFC FT GAGLVVAYALLGCTWLIMKTEGALQRRMIVVARPLSGALLAVIAVISVWTPLIEPAIAR FT RWFSLPNFYAFAPVPVLVLAAAWGLLRALRGQPDMAPFLLTLALVFLGYSGLCISLWPH FT AIPPGVTLWEAAAPPQSQGFALVGALFIVPIILTYTAWSYYVFRGKVRAGDGYH" FT misc_feature 1100266..1101246 FT /note="HMMPfam hit to PF02322, Cytochrome oxidase subunit FT II, score 2.4e-142" FT misc_feature join(1100272..1100325,1100488..1100556,1100614..1100682, FT 1100710..1100778,1100839..1100907,1100950..1101003, FT 1101037..1101105,1101163..1101231) FT /note="8 probable transmembrane helices predicted for FT BPP1025 by TMHMM2.0 at aa 5-22, 77-99, 119-141, 151-173, FT 194-216, 231-248, 260-282 and 302-324" FT misc_feature 1100710..1100772 FT /note="PS00079 Multicopper oxidases signature 1." FT CDS 1101278..1101424 FT /transl_table=11 FT /locus_tag="BPP1025A" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3928 SWALL:Q9HX86 (EMBL:AE004810) (56 aa) fasta FT scores: E(): 0.04, 44.18% id in 43 aa" FT /protein_id="CAE36326.1" FT /translation="MTEDTLDRPASTLRRLGWLALLWAGGVAGLGLAAGGLKLIMKLAG FT LTP" FT CDS 1101441..1102862 FT /transl_table=11 FT /locus_tag="BPP1026" FT /product="putative aminotransferase" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4132 SWALL:Q9HWP9 (EMBL:AE004829) (471 aa) fasta FT scores: E(): 1.8e-105, 58.08% id in 470 aa, and to FT Salmonella typhimurium putative regulatory protein, GntR FT family YdcR or Stm1598 SWALL:Q8ZPC8 (EMBL:AE008770) (474 FT aa) fasta scores: E(): 6.7e-76, 47.1% id in 467 aa" FT /protein_id="CAE36327.1" FT /translation="MKLKRYEVLADEITASIQAGTRRAGDRLPSVRQTSASRGLSATTV FT FKAYYLLEARGLIRARDRSGYYVVGKPKALPPELEAGAPAESRRVDVDVSDRVLHVLQL FT TMRRDVVPFGSAFPHPSLFPHARLARAMASSVAALDPWSSVDDLSAGNTRLRRAIALRY FT LADGVQVRTEDIVITNGALEALNLCLGAVTRPGDSVLIESPTFYSALQSLERLGLRAIE FT VPAHPREGIELDALARAIDTHRPAACWLMTNFQNPLGSLMPEDKKRALVELLAARDVPL FT IEDDVYSELYFGAQRPLPAKAYDESGIVMSCSSFSKSLAPGWRIGWVLGGRYADRILRG FT KLALSLSTSAPSQAALATYLEHGGYDRHLRQLRQTLEQQRNQVMEAIARHFPPGTRTTH FT PDGGYFLWVALPPQVDALAVHRAALSLGVSTAPGPIFSVQDRFRHCLRLNYGHPFDARA FT QDGLATLGKLIARQC" FT misc_feature 1101465..1101644 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.4e-10" FT misc_feature 1101924..1102847 FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II, score 7e-11" FT CDS 1103014..1103346 FT /transl_table=11 FT /locus_tag="BPP1027" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE36328.1" FT /translation="MYRGHEAIKQFMQAIGLPWTPGQAESAELRASYRIGSGRPLNIDR FT TRVEFHCDDARAKVWVPEFARTSFHQWFEVAYQDFEYAPGASMLKIKAAARGNAAAYSV FT GLKPLA" FT CDS complement(1103357..1106518) FT /transl_table=11 FT /gene="ttrA" FT /locus_tag="BPP1028" FT /product="tetrathionate reductase subunit A" FT /note="Similar to Salmonella typhimurium tetrathionate FT reductase subunit A TtrA or Stm1383 SWALL:Q9Z4S6 FT (EMBL:AJ224978) (1020 aa) fasta scores: E(): 5.4e-115, FT 50.14% id in 1041 aa, and to Pasteurella multocida TtrA or FT Pm0721 SWALL:Q9CMT7 (EMBL:AE006109) (1029 aa) fasta scores: FT E(): 5e-179, 46.82% id in 1038 aa" FT /protein_id="CAE36329.1" FT /translation="MPKQHPTPDTDAPADARRRKLIARGGAVAGGMAAFAAGYGETVAR FT AVKGLAQGSAGAPTADALRGNSLTPEFRIDPVTGALSAQPGQTVSPSSCLGCWTQCGVR FT LRVDTETNRILRVAGNPYHPLATTQPAPMHAPVREVYARLGGDNGLEGRATSCARGSAM FT LEQLTSPYRVLQPLKRVGPRGAGQWRTISFEQLVEEVCEGGDLFGEGHVDGLRAIYDPV FT TPLDPDNPEYGPRSNQLLFTDSANEGRTPLIQRFAAQSFGTVNVSNHGSYCGQSFRVGT FT GAAFGDLKGMPHGKPDWMRARFGLFIGTAPAQSGNPFQRQGRQLAEARVRDDGAGFHYV FT VVSPVLPASASLAAGSGNEWLAVNPAGDLALVMGMIRWILEHDRYDAAMLSQPGPAAMD FT AAGEAAWTNATHLVIDAPGHARHGSCLRGADLGWPRAGADPQAEDVYVVQRPDGTLAPH FT THAGPAALFVERDLSAAGVAPGLGGVRASSALALLRREARRMTLDEYARHSGVPAARIA FT GLAERFTSHGKQAVADAHGGTMSGAGFYTAYAIAMLNTLVGNLNVAGGLVLDGGPFAPY FT GKGPRYDIAGFAGRVAPRGVSLSRNRFPYEKSSEYRRKAEAGQSPYPAQSPWYPATGAL FT SSEMLASALAGYPYRAKVWLNHMSNPVYAIAGLKNVIADKLRDPGLLPLSVSINAFINE FT TNALADYIVPDTITYESWGVSAPWADVQAKASTVRWPAVAPRVARTANGEPVCLESFLI FT ACAKRLDMPGFGADAIAGRDGRRHALDTASDFFLRGMANMAYAGGAPVAEASEDDLALT FT GVDRHADLLRRTLQDDEWRRVALLMSRGGRFDAAEDVWRDGRVHPPYRKPLHVWSEDLA FT RMRHAMTGEPYSGCPTWYPTRLADGRAMREQYPQADWPFLLSSFKSNLMSSMSIGVSRL FT RQVHPHNPVSISRADAARLGIGNGDAVRIVTPGGAVTGLALVRDGVQPGAIAIEHGYGH FT TELGARAHVVDGRPMPHDPALAAGVNLNDLGFGDATRALRDNVWIDWVSGAAVRQGLPA FT RLEKA" FT misc_feature complement(1103459..1103791) FT /note="HMMPfam hit to PF01568, Molydopterin dinucleotide FT binding domain, score 3.5e-08" FT misc_feature complement(1104047..1106260) FT /note="HMMPfam hit to PF00384, Molybdopterin FT oxidoreductase, score 4.2e-06" FT misc_feature complement(1106390..1106455) FT /note="1 probable transmembrane helix predicted for BPP1028 FT by TMHMM2.0 at aa 21-43" FT CDS complement(1106545..1107546) FT /transl_table=11 FT /gene="ttrC" FT /locus_tag="BPP1029" FT /product="tetrathionate reductase subunit C" FT /note="Similar to Salmonella typhimurium tetrathionate FT reductase subunit C TtrC or Stm1384 SWALL:Q9Z4S7 FT (EMBL:AJ224978) (340 aa) fasta scores: E(): 8.4e-26, 35.07% FT id in 345 aa, and to Pasteurella multocida TtrC or Pm0722 FT SWALL:Q9CMT6 (EMBL:AE006109) (349 aa) fasta scores: E(): FT 2.4e-09, 32.02% id in 356 aa" FT /protein_id="CAE36330.1" FT /translation="MRISELITPVYDAAWLPWAVQYFFLIGISAAAALTAAACAFGRPG FT SARARLLPAAIAVLAVSAVAAPVSLLADLHQPGRFWHFYTQATPWSWMWLGALLLPLYA FT TLALGLCAAWWLGWRRAMRALAVPLALSALSILVYTGSEVMVLRSRPLWHTVFLPINFA FT LTGWLGALGAMLLLGRWLPGGLAMAALAALAASAGAWAVLGLLGHEPSFDAALRLFAQF FT PAWRASLAGAIATGLCMAALLQMRPARLAGPAASLALALTLLAAAWIFRWVVFMNVQGV FT PKYGAGLYLYDMPWGSDGLLGMAGVLGLCVALVAALAWALERFPARTAAPAR" FT misc_feature complement(join(1106584..1106649,1106731..1106796, FT 1106818..1106880,1106926..1106991,1107013..1107078, FT 1107109..1107174,1107196..1107261,1107334..1107399, FT 1107421..1107486)) FT /note="9 probable transmembrane helices predicted for FT BPP1029 by TMHMM2.0 at aa 20-42, 49-71, 95-117, 124-146, FT 156-178, 185-207, 222-243, 250-272 and 299-321" FT CDS complement(1107560..1108333) FT /transl_table=11 FT /gene="ttrB" FT /locus_tag="BPP1030" FT /product="tetrathionate reductase subunit B" FT /note="Similar to Salmonella typhimurium tetrathionate FT reductase subunit B TtrB or Stm1385 or Sty1736 SWALL:Q9Z4S8 FT (EMBL:AJ224978) (250 aa) fasta scores: E(): 4.7e-60, 66.52% FT id in 236 aa, and to Pasteurella multocida TtrB or Pm0723 FT SWALL:Q9CMT5 (EMBL:AE006109) (245 aa) fasta scores: E(): FT 5.3e-60, 66.94% id in 236 aa" FT /protein_id="CAE36331.1" FT /translation="MHNAPSSDRPPAPSKRGFLKELLGLAATATVIPIAPEARAGMNAQ FT PPRRPGAAGKRYGMVVDLRQCIGCQACTVSCSMENLPPIGQFRTTVLQYEVLPDDGGPC FT SMVMLPRLCNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDARFIN FT HETQTADKCTFCEHRLEAGLLPACVESCVGGARVIGDLNDPASAVSRLLAEHRDEVKVL FT KPDMRTDPHVYYIGLPDAFVNQIDGQAGVRLAGRH" FT misc_feature complement(1107851..1107922) FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain, score FT 6.4e-08" FT misc_feature complement(1107866..1107901) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature complement(1108088..1108159) FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain, score FT 0.097" FT CDS 1108649..1109002 FT /transl_table=11 FT /locus_tag="BPP1031" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical signal FT peptide protein R02090 or Smc01489 SWALL:Q92K52 FT (EMBL:AL591789) (117 aa) fasta scores: E(): 2.5e-11, 40.86% FT id in 115 aa" FT /protein_id="CAE36332.1" FT /translation="MKKTIIASAACAALLATSGAVLAQSGASLTPDQLQHLDTDKSGGV FT SQKEYQAFMEASFAKLDANGDGSLTRQELPQEVSDAQFTAMDANKDGRVSRQEFLGQVM FT RDFATASRGGELK" FT misc_feature 1108649..1108717 FT /note="Signal peptide predicted for BPP1031 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 23 and 24" FT misc_feature 1108661..1108729 FT /note="1 probable transmembrane helix predicted for BPP1031 FT by TMHMM2.0 at aa 5-27" FT misc_feature 1108733..1108819 FT /note="HMMPfam hit to PF00036, EF hand, score 2.9" FT misc_feature 1108832..1108870 FT /note="PS00018 EF-hand calcium-binding domain." FT misc_feature 1108880..1108966 FT /note="HMMPfam hit to PF00036, EF hand, score 0.88" FT misc_feature 1108907..1108945 FT /note="PS00018 EF-hand calcium-binding domain." FT CDS complement(1109025..1109951) FT /transl_table=11 FT /locus_tag="BPP1032" FT /product="putative hydrolase" FT /note="Similar to Rhizobium meliloti hypothetical protein FT R02995 or Smc03098 SWALL:Q92LP0 (EMBL:AL591792) (291 aa) FT fasta scores: E(): 2e-80, 66.44% id in 295 aa, and to FT Saccharomyces cerevisiae hypothetical 32.8 kDa protein in FT bio3-hxt17 intergenic region Ynr064c or N3535 FT SWALL:YN93_YEAST (SWALL:P53750) (290 aa) fasta scores: E(): FT 2.6e-31, 32.36% id in 275 aa" FT /protein_id="CAE36333.1" FT /translation="MTQSSQTTSPSADARVKHRYLDLDELRIFYRETGPADAPVVLLPH FT GYPCSSFQYRDFMPALADQWRLLAPDFPGFGYSDTPDTARFACDFEHYTDFLQQFAHAL FT GLPSYALYLHDYGSQIGLRLAMREPDKVSGLIIQNGDIYEDELGPRYAPLQAYWADPTL FT EGRYKLSLAVSEEGFRDEFLNDLPEEQAECITPDMWKLAWALLREPRRREIMVGLMEGL FT EDNLAWFPRYQAYLRERQPPTLIVWGVHDGYMPEAAARAYLRDLPDAELHLLQAGHWAL FT ETHLAPIVALTRAFLQRVHATPNFPPP" FT misc_feature complement(1109064..1109759) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 2.1e-20" FT CDS complement(1110248..1112599) FT /transl_table=11 FT /gene="lon" FT /gene_synonym="lonD" FT /gene_synonym="bsgA" FT /locus_tag="BPP1033" FT /product="ATP-dependent protease La" FT /EC_number="3.4.21.53" FT /note="Similar to Azospirillum brasilense ATP-dependent FT protease La Lon SWALL:LON_AZOBR (SWALL:P77810) (810 aa) FT fasta scores: E(): 1.4e-110, 46.64% id in 776 aa, and to FT Myxococcus xanthus ATP-dependent protease La 2 LonD or BsgA FT SWALL:LON2_MYXXA (SWALL:P36774) (826 aa) fasta scores: E(): FT 2.4e-127, 51.61% id in 775 aa" FT /protein_id="CAE36334.1" FT /translation="MTDPRTLPEDARIIIPLRDAVLFPGVLSPVTVHRQSSVAAAQEAV FT KNERPLGFLLQRDPQKNDVGPDDLYWVGTEGPVARYITGQEGAHHLLVQGQARFRVLEF FT LEGWPFLVARVALVDTPAASDSQTEARFLQLKQQTIDAIALLPNVPDELADVVRGIESP FT ALLADMVTNLIDIKAGQKQDILETFDLARRLDKVIELLAARLEVLRLSKEIGERTRAQF FT DERQRETVLREQLRQIQKELGETDDGAAEAAQLKETIEQAGMPEEVLNHARKELSRLQR FT MGDGSGEYAMLRTYLEWLTELPWKHEPQQAIDLAEARRVLDEDHFGLDKIKRRILEYLA FT VRKLNPEGRSPILCFVGPPGVGKTSLGQSIARATGRAFQRVALGGVHDEAEIRGHRRTY FT LGALPGNIIQAVRRAGTGNLVLMLDEIDKLGAGGFHGDPGSALLEVLDPEQNHKFRDNY FT LAVDYDLSHVMFICTANVLDTVPGPLRDRMEIIDLPGYTEEEKIQIARRYLIKRQLEAN FT GLRPEQADITDAALAAIVGDYTREAGVRNLEREIGSVLRHAAMQVAEGKAGHVSIDTAD FT LGATLGPRRFENEVALRTSLPGVATGLAWTPVGGDILFIEASKVPGSGRLILTGQLGDV FT MKESAQAALTLAKTWSGDALEKVDIHIHVPAGATPKDGPSAGVAMFVALASLLSGRPVD FT ANVAMTGEVSLRGLVLPIGGIKEKTLAALRAGITTVMLPRRNEKDLDDVPAEARRKLRF FT VLLDRVEDALRCALGDEPQAEDEPAARATG" FT misc_feature complement(1110560..1110586) FT /note="PS01046 ATP-dependent serine proteases, lon family, FT serine active site." FT misc_feature complement(1110956..1111546) FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA), score 1.5e-45" FT misc_feature complement(1111508..1111531) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1111991..1112560) FT /note="HMMPfam hit to PF02190, ATP-dependent protease La FT (LON) domain, score 4.1e-09" FT CDS complement(1112596..1113003) FT /transl_table=11 FT /locus_tag="BPP1034" FT /product="heat shock protein" FT /note="Similar to Synechococcus vulcanus heat shock protein FT HspA SWALL:O82825 (EMBL:AB002666) (145 aa) fasta scores: FT E(): 0.0011, 30.95% id in 126 aa, and to Thermotoga FT maritima heat shock protein, class I Tm0374 SWALL:Q9WYK7 FT (EMBL:AE001717) (147 aa) fasta scores: E(): 0.00051, 30.57% FT id in 121 aa" FT /protein_id="CAE36335.1" FT /translation="MRSRDFSSWIWGDALSLLQQADRLHRQLLRTGPAQAPCWEPPVDM FT IETESAVLIYVALPGVAAGDVAVRFDPDGISISGVRPLPALRNARIHGLEIPYGRFQRR FT IRLPLHALEPEAPTLADGCLTLTLKKLREAP" FT CDS complement(1113317..1113553) FT /transl_table=11 FT /locus_tag="BPP1035" FT /product="putative exported protein (partial)" FT /note="Partial CDS. Truncated relaive to its B. FT bronchiseptica orthologue. Similar to the N-terminal region FT of Ralstonia solanacearum hypothetical signal peptide FT protein rsc2895 or Rs00203 SWALL:Q8XVD6 (EMBL:AL646072) FT (106 aa) fasta scores: E(): 6.4, 38.09% id in 63 aa" FT /protein_id="CAE36336.1" FT /translation="MHPLSRIAAALLATLPVFAAQADSPAQQYGLALEAQTAGDYPRML FT SLLQSAAGAGHAPAQQTLGLALLGAYQIVQARW" FT misc_feature complement(1113488..1113553) FT /note="Signal peptide predicted for BPP1035 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.819 between residues 22 and 23" FT CDS 1113684..1114574 FT /transl_table=11 FT /locus_tag="BPP1036" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Ralstonia solanacearum probable FT transcription regulator protein Rsp1267 or Rs05312 FT SWALL:Q8XQG0 (EMBL:AL646083) (294 aa) fasta scores: E(): FT 8.4e-64, 58.98% id in 295 aa, and to Brucella melitensis FT transcriptional regulatory protein, LysR family Bmeii1077 FT SWALL:Q8YB24 (EMBL:AE009740) (294 aa) fasta scores: E(): FT 3.6e-50, 50.69% id in 290 aa" FT /protein_id="CAE36337.1" FT /translation="MRFDLTDLRLFLNVCEAGTITAGARRSHMTLASASERVRGMEGAL FT GVALLLRERYGVQPTAAGRTLLHHARAVLLQMDRLRGELGQYGQGLKGHVRLLCNTAAL FT SEHLPAVLAGFLAAHPQVSVDLEERLSREIADALRAGTCDIGVLADSADLHGLQARTFR FT HDPLVVAVPRGHALAGRAAVSLADVAALDFVGLVEGSALQAHIGQHARRAGQVLNYRVR FT LRSFDAICDMVGHGIGVAIVPRTAALRAARAGRIRRLRLSDDWAERDLMLCVRDPDALP FT SYARQFVAHALAEAP" FT misc_feature 1113696..1113875 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.9e-10" FT misc_feature 1113738..1113830 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1113945..1114568 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 6.6e-45" FT CDS complement(1114591..1115061) FT /transl_table=11 FT /locus_tag="BPP1037" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsp0729 or Rs01699 SWALL:Q8XRV2 (EMBL:AL646080) FT (172 aa) fasta scores: E(): 6.2e-30, 60.43% id in 139 aa, FT and to Synechocystis sp hypothetical protein Sll1188 FT SWALL:P72845 (EMBL:D90901) (164 aa) fasta scores: E(): FT 2e-18, 45.86% id in 133 aa" FT /protein_id="CAE36338.1" FT /translation="MTDPAATLIRRLGLLPHPEGGHYRETYRADDAVTRADGARRAAST FT AILYLLCDGAWSTWHRIRADELWHFHAGAPLHIHVLASDGGYRRLRLGNTLEDAGAEFQ FT AVVPAGSWFAAELARPGGYALAGCTVAPGFEFSEFNWPTPPCCGACTPRRPT" FT misc_feature 1115154..1116107 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00962, Adenosine/AMP deaminase, FT score 7.8e-70" FT CDS 1115160..1116113 FT /transl_table=11 FT /gene="add" FT /locus_tag="BPP1038" FT /product="adenosine deaminase" FT /EC_number="3.5.4.4" FT /note="Similar to Escherichia coli adenosine deaminase Add FT or B1623 SWALL:ADD_ECOLI (SWALL:P22333) (333 aa) fasta FT scores: E(): 2.3e-25, 30.99% id in 313 aa, and to FT Pseudomonas aeruginosa adenosine deaminase Add or Pa0148 FT SWALL:ADD_PSEAE (SWALL:Q9I6Y4) (316 aa) fasta scores: E(): FT 1e-101, 78.66% id in 314 aa" FT /protein_id="CAE36339.1" FT /translation="MYDWLNALPKAELHLHLEGTLEPGLMFELARRNGVALPWPDVESL FT RRAYDYDNLQEFLDLYYRGAEVLRTEQDFYDLTWAYLLKCREQNVVHTEPFFDPQTHTD FT RGIAFETVLAGITQALEDGRTQLGIQGGLILSFLRHLPEEAAMRTLEQALPYRDAFIAV FT GLDSSERGFPPRLFQRVFERARAAGLPAVAHAGEEGPPEYIWEALDLLQVRRIDHGVRA FT AEDERLIERLIDTQIPLTVCPLSNTRLRVFDSMAEHNILELLERGVKVTVNSDDPAYFG FT GYITENFHALHEHLGMTQDQARRLAANSMDARLAGG" FT CDS complement(1116130..1117092) FT /transl_table=11 FT /locus_tag="BPP1039" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 4.4e-34, 37.5% id in 312 aa, and to Agrobacterium FT tumefaciens StrC58 conserved hypothetical protein atu4727 FT SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): FT 2.1e-32, 36.07% id in 316 aa" FT /protein_id="CAE36340.1" FT /translation="MSLKHTLGALALALGLLPAGPAAADYPERPVRMVIPFAAGGPADI FT VGREFAQLFGQALGQPVVVVNAGGGHGVPALNQVLGAPADGYTLLMPASGNMTIPSKAM FT QGKDVLALLAPISQLTQSPHVLVVTAGLPVDSVQSLIDYAKAHPGKVNFGSAGVGGVAH FT LGMELFKSQAKVDVVHVPYRGTSQVITDLASGQVQALFSSMPSLKPMIDKGAVKALAMS FT APSSGADTSKLPVVSATLPGMAYTTWYGLFAKAGTPPEVLEKLNQAVVETLKDPELNRK FT FESEGVEFVASTPQQLEALVRQDTKKWTALIEQAGIQVE" FT misc_feature complement(1116142..1116957) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.2e-67" FT misc_feature complement(1117021..1117092) FT /note="Signal peptide predicted for BPP1039 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.922 between residues 24 and 25" FT CDS complement(1117127..1117756) FT /transl_table=11 FT /locus_tag="BPP1040" FT /product="putative dimethylmenaquinone methyltransferase" FT /note="Similar to Agrobacterium tumefaciens StrC58 FT demethylmenaquinone methyltransferase MenG SWALL:AAL46017 FT (EMBL:AE008954) (227 aa) fasta scores: E(): 8.5e-19, 36.54% FT id in 197 aa, and to Bacillus halodurans hypothetical FT protein Bh1938 SWALL:YJ38_BACHD (SWALL:Q9KBI9) (210 aa) FT fasta scores: E(): 8e-19, 40.54% id in 185 aa" FT /protein_id="CAE36341.1" FT /translation="MSVSPARDLSTTLLADAGARVMSAGIKPLRAGWHVHGRALTVSVD FT AGDNLAIHAALAQARPGEVLVIDAQGYLDRAVMGGIMCAQAAAVGLAGVIIDGAMRDLA FT ELRAGTLPAYALGGSPAGPTKRGGGTVRRAIRCGGVDVRPGDWIMADDDGVVVYRDDEA FT EAVLAAALAKQQAEAARMAAIARGELRPAWLDDALARAPIDTGESA" FT CDS complement(1117762..1118481) FT /transl_table=11 FT /locus_tag="BPP1041" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT R01764 or Smc00503 SWALL:Q92PI9 (EMBL:AL591788) (244 aa) FT fasta scores: E(): 1.8e-38, 49.56% id in 230 aa, and to FT Yersinia pestis hypothetical protein Ypo0083 SWALL:Q8ZJL1 FT (EMBL:AJ414141) (310 aa) fasta scores: E(): 1.4e-40, 49.78% FT id in 233 aa" FT /protein_id="CAE36342.1" FT /translation="MASAILVVTAHVGDFVWRCGGAMALHAQRGVDVRLVCLSYGENGE FT SNAAWQANPDGARDEVKQVRRAEAEAAAAILGAAGVDFYDLGDYPMPESPDAVRRLSQT FT LRAVRPAAVITHPEHDPSNLDHCRAYDMVLRARMQAMAPGHGADYIVPPQVLCFEPHQS FT ELCGFKPNLLLDISAVWEQKQRAMQAMATQRNLWAYYERVALQRGAQAGRRAKTTATAY FT AEAYQSIFPAVVPAFVE" FT misc_feature complement(1117789..1118478) FT /note="HMMPfam hit to PF02585, Uncharacterized LmbE-like FT protein, COG2120, score 9.7e-06" FT CDS 1118581..1119288 FT /transl_table=11 FT /locus_tag="BPP1042" FT /product="putative transcriptional regulator" FT /note="Similar to Streptomyces griseus glycerol operon FT regulatory protein GylR SWALL:GYLR_STRGR (SWALL:P22866) FT (254 aa) fasta scores: E(): 6.3e-05, 30.12% id in 249 aa, FT and to Streptomyces coelicolor putative transcriptional FT regulator Sc1c2.33C SWALL:O86533 (EMBL:AL031124) (238 aa) FT fasta scores: E(): 7.4e-06, 31.33% id in 217 aa" FT /protein_id="CAE36343.1" FT /translation="MSNDGVVAVERALAVLDCFKPGDERLGLAEFAARLPLHKTTIFRL FT LNSLARCGYVLREPDGRYSLGPRVLYLARVYERGFNLSGVVMPVLESLSGQTGESAAYY FT VEGDQPGQRLCLFRHQPYVGLHSQVLAGSVMPPDRSSTGRVFAVWAQGQPGGDERLPFF FT SCGARDPYTSSWSVPVVGDDDRFVGALTVAGPSERLRTVDVPRFERLVLEHADDLARRL FT GASATIRAALYGD" FT CDS complement(1119302..1120393) FT /transl_table=11 FT /locus_tag="BPP1043" FT /product="putative 2-nitropropane dioxygenase" FT /EC_number="1.13.11.32" FT /note="Similar to Williopsis mrakii 2-nitropropane FT dioxygenase SWALL:2NPD_WILMR (SWALL:Q12723) (374 aa) fasta FT scores: E(): 3.9e-16, 33.04% id in 348 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa4202 FT SWALL:Q9HWH9 (EMBL:AE004836) (351 aa) fasta scores: E(): FT 3.9e-65, 56.52% id in 345 aa" FT /protein_id="CAE36344.1" FT /translation="MPAAYAATPFAQRLGLTLPVVQAPMAGVSTPALAAAVSNAGGLGS FT LGLGAMNADAARQAIALTREQTMRPFNVNLFCHAPATADAAREARWLQYLAPRFAEFDA FT QPPATLREVYTSFLADDDMFDMLLAERPEVVSLHFGLPPASRIAALRQAGIYLMATATD FT MREAARIAAAGVDAIVAQGIEAGGHRGMFDPAARDEQLGTLALTRLLARRFDAPVIAAG FT GIMDGAGVAAVLALGAQAAQLGTAFISCPESSADMPHRHALLDQAEVATTLTRAISGRP FT ARSIANRYTELGAAADCPPTPDYPIAYDAGKALHAAARARGDASYAAQWAGQATALSRG FT VPAATLMRQLQAELNDCIGRLAR" FT misc_feature complement(1119335..1120375) FT /note="HMMPfam hit to PF03060, 2-nitropropane dioxygenase, FT score 5.5e-73" FT misc_feature complement(1119680..1119742) FT /note="PS00912 Dihydroorotate dehydrogenase signature 2." FT CDS complement(1120417..1121292) FT /transl_table=11 FT /locus_tag="BPP1044" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa4203 SWALL:Q9HWH8 FT (EMBL:AE004837) (284 aa) fasta scores: E(): 4.4e-44, 53.59% FT id in 278 aa, and to Ralstonia solanacearum probable FT transcription regulator protein Rsc0804 or Rs05024 FT SWALL:Q8Y186 (EMBL:AL646061) (302 aa) fasta scores: E(): FT 9e-39, 46.02% id in 302 aa" FT /protein_id="CAE36345.1" FT /translation="MELAELEIFRAVARTESVTRAAHALARVQSNVTTRLRQLEDSLGV FT TLFLRENKRMTLTPDGRRLLAYAERLLALAEETRQAMRADTPAGRLRLGAMESAAASRL FT PQPLASLHAQWPDLAIDLHTGTTQWLAGQVAACRLDCAVIAHPAASPADTAMAPLHPSL FT RGAYLYSEELLLALPPGHPPVRTPQDIQVRTLAAFAQGCTYRLCAEQWLDMAGVRVIEM FT ASYHAMMAGVLAGSAMAILPRSVLALHPGAALARTVPVRTVPCFLIHRDGYDSAARLAL FT LRALQAPPAP" FT misc_feature complement(1120423..1121043) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 7.3e-25" FT misc_feature complement(1121107..1121286) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 6.2e-20" FT misc_feature complement(1121152..1121244) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS complement(1121356..1122288) FT /transl_table=11 FT /locus_tag="BPP1045" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti putative transmembrane FT protein R00347 or Smc00428 SWALL:Q92SM4 (EMBL:AL591783) FT (298 aa) fasta scores: E(): 1.4e-51, 60.21% id in 279 aa, FT and to Ralstonia solanacearum hypothetical transmembrane FT protein Rsp0685 or Rs01764 SWALL:Q8XRZ6 (EMBL:AL646080) FT (300 aa) fasta scores: E(): 9e-41, 51.25% id in 279 aa" FT /protein_id="CAE36346.1" FT /translation="MSRSSSPPLAPARRTRGGHACLALAMVLAGSTVPASKLIAAEVAP FT FTATAIRLGLALPVFLLLMRATGARWPRPGRRDACLLALQAAAGSVGYTALLIAGLRLT FT SAADAAVVIGTLPAVTALLAMAVLRERPPPRTLAAIALAAAGVLVLVGGRTDDAPGSLA FT GNLLVLGAVVCEGLFILLSKRLRAPIAPLPLSAALTAIGAVLAGAAALAEAPWHAAFGS FT PALAVLAYYAWLPTVAGFVLWYAGLARASASEAALFTALAPVAAVLLAALALGETVGPR FT QAAGIGCVLAAVLALRPGGDKQSQKENIK" FT misc_feature complement(join(1121389..1121454,1121467..1121523, FT 1121545..1121610,1121656..1121721,1121743..1121808, FT 1121824..1121877,1121905..1121970,1121986..1122051, FT 1122103..1122168)) FT /note="9 probable transmembrane helices predicted for FT BPP1045 by TMHMM2.0 at aa 15-37, 54-76, 81-103, 112-130, FT 135-157, 164-186, 201-223, 230-249 and 253-275" FT misc_feature complement(1121395..1121772) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 3.9e-16" FT misc_feature complement(1121833..1122210) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 2.1e-17" FT CDS complement(1122350..1123153) FT /transl_table=11 FT /locus_tag="BPP1046" FT /product="probable AraC-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative transcription FT regulator protein R00348 or Smc00429 SWALL:Q92SM3 FT (EMBL:AL591783) (269 aa) fasta scores: E(): 2.8e-43, 50% id FT in 268 aa, and to Ralstonia solanacearum probable FT transcription regulator protein Rsp0686 or Rs01763 FT SWALL:Q8XRZ5 (EMBL:AL646080) (274 aa) fasta scores: E(): FT 4.3e-43, 52.83% id in 265 aa" FT /protein_id="CAE36347.1" FT /translation="MPQGRFIALRSAEPGVSAVAAQSRHAFARHTHDQYGVGLMTRGAQ FT RSASGRGPVQARAGELITVNPGEVHDGAPLGEGERAWCMLYFEPALIAQAAAGLDGDAG FT SYEFHLPVLGHAALAAAFARLYACVTTPGAAPLARDAALLQLLAGLRRPDPGRAPARLP FT HPGIARARQRIDDDPAAALTLADLAQACGLSRYQVLRGFAHATGLPPHAYQTQRRLQLA FT RRLILQGVPLAETAAACGFADQSHLSRLFARSYGMTPGRYARAAR" FT misc_feature complement(1122362..1122490) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 2.7e-09" FT misc_feature complement(1122377..1122502) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT misc_feature complement(1122509..1122646) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.00016" FT CDS complement(1123202..1125004) FT /transl_table=11 FT /locus_tag="BPP1047" FT /product="putative lipoprotein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra0050 or Sma0101 SWALL:Q930Z4 (EMBL:AE007199) (541 aa) FT fasta scores: E(): 5.1e-38, 31.91% id in 539 aa, and to FT Methanosarcina acetivorans strC2A. exoenzymes regulatory FT protein AepA SWALL:AAM04201 (EMBL:AE010738) (553 aa) fasta FT scores: E(): 1.3e-28, 39.56% id in 551 aa" FT /protein_id="CAE36348.1" FT /translation="MIRSRLLPAAALALLTGCASQLPPADSTAMADAIWFGGPIVTIDA FT HTPSARAVAVRDGRIMAVGREHAVLRYRGPDTRMHDLRGATLLPGFVDAHSHVSTVGMQ FT ALSANLLPPPDGPNASIADLQNTLRQFRRNSDLPRQFGMLLGFGYDDSQLQERRHPNRD FT DLDAVARDLPVVAIHQSGHVGVLNSAALAAAGIGAASRAPDGGVIGRRKGSREPDGVLE FT ENAFFAALARLFPRLTPEQAVAMLDASQQLYIRNGYTTIQDGRAAPDQVRIAELAARQG FT KLVADVVAYPDILAPGTPALMQAPWFRPAGEPVRYQRRFRIGGVKLTLDGSPQAKTAWL FT SEPYFVPPPGQNRKYAGYGVVSDARAAQLYGLALANRWQILTHANGDRAIDQMIAALRQ FT AEQAHPGVDVRPVLIHGQTLRQDQIPALKSLGVLASLFPMHTYYWGDWHRDSVLGPRRA FT ENISPMRWVTDAGMPVTSHHDAPVAFPDSMRVLSATVNRITRSGHVLGPHQRLDPLTAL FT KSMTLWAAYQHFEEDDKGSITRGKLADFVVLSGNPLEVPPATLAGLKVLQTVKEGRVIF FT DRASAVGTPAPSPLGRRSAPRPPA" FT CDS 1125257..1125481 FT /transl_table=11 FT /locus_tag="BPP1048" FT /product="conserved hypothetical protein" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm1568 SWALL:Q9CKP1 (EMBL:AE006194) (70 aa) fasta FT scores: E(): 9.3e-12, 58.2% id in 67 aa, and to Neisseria FT meningitidis hypothetical protein Nma1258 or Nmb1059 FT SWALL:Q9JRB9 (EMBL:AL162755) (72 aa) fasta scores: E(): FT 2.8e-08, 49.27% id in 69 aa" FT /protein_id="CAE36349.1" FT /translation="MFPEYRHVITRLKAEDPHFTALFQRHNELDQEIQNMEAGIVPASS FT GNIENLKKEKLRLKDKLYDILRAADRDSS" FT CDS 1125607..1126638 FT /transl_table=11 FT /locus_tag="BPP1049" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0141 SWALL:Q9I6Z1 (EMBL:AE004452) (298 aa) fasta FT scores: E(): 3.1e-66, 63.91% id in 266 aa, and to Brucella FT melitensis UDP-galactose-lipid carrier transferase Bmei1625 FT SWALL:Q8YF97 (EMBL:AE009598) (319 aa) fasta scores: E(): FT 3.6e-54, 51.32% id in 265 aa" FT /protein_id="CAE36350.1" FT /translation="MPVQTAGQAERQTVQAAIEAAAVDQAASLLEVLRNTSKVEPARVR FT DTVKTLLDGLSPDETAQLRELLLTGGQVPWRARDPNHPDDELATDWREGGYPYRNRMSR FT RAYEKQKYRLQVELLKLQAWVRETRQRVVILFEGRAAAGKGGTIKRFMEHLNPRGARVV FT ALEKPSDSERGQWYFQRYVQHLPTAGEIVLFDRSWYNRAGVERVMGFCSQDEYEAFMHQ FT VPEFERHLIRSGTHLIKFWFSVSQQEQHRRFKERQVHPLKQWKLSPVDMASLDKWDAYT FT QAKEDMFAHTDTADSPWIVVRSDCKKRARLNAMRYVLHKMSYANRDFESIGPVDALLVD FT RAI" FT CDS complement(1126652..1126870) FT /transl_table=11 FT /locus_tag="BPP1050" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis SlyX protein FT homolog SlyX or Nma0371 SWALL:Q9JWH4 (EMBL:AL162753) (74 FT aa) fasta scores: E(): 0.0048, 32.43% id in 74 aa, and to FT Neisseria meningitidis SlyX protein, putative Nmb2063 FT SWALL:Q9JXG3 (EMBL:AE002556) (74 aa) fasta scores: E(): FT 0.01, 31.08% id in 74 aa" FT /protein_id="CAE36351.1" FT /translation="MEHTHDPAQRLTELEIKAGFAADLLEQLNQIVVRQQRQIDALARE FT VAELRQQVPAGGAGAPRSLRDDLPPHY" FT CDS 1126948..1127430 FT /transl_table=11 FT /locus_tag="BPP1051" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas lemoignei hypothetical 16.7 FT kDa protein in pahZ1 5'region SWALL:YPAH_PSELE FT (SWALL:P52089) (154 aa) fasta scores: E(): 1.3e-29, 59.35% FT id in 155 aa, and to Escherichia coli hypothetical protein FT YaiI or B0387 SWALL:YAII_ECOLI (SWALL:P52088) (152 aa) FT fasta scores: E(): 8.1e-28, 56.57% id in 152 aa" FT /protein_id="CAE36352.1" FT /translation="MNIWVDADACPAEVKDILWRAAQRWQVPVTLVANQLLRVPASPWM FT RAVQVPRGFDVADAHIVASAVPGDLVITADIPLAAEVVGKGVAAMSWRGEVFDAGSIGE FT RLTMRDMMEELRAGGVDIGGPAAFGQADRRAFANALDAAMQRWARTRGAGGKPGAV" FT misc_feature 1126948..1127385 FT /note="HMMPfam hit to PF02639, Uncharacterized BCR, FT YaiI/YqxD family COG1671, score 5e-56" FT CDS 1127611..1129191 FT /transl_table=11 FT /gene="ilvA" FT /locus_tag="BPP1052" FT /product="threonine dehydratase biosynthetic" FT /EC_number="4.3.1.19" FT /note="Similar to Burkholderia cepacia threonine FT dehydratase biosynthetic IlvA SWALL:THD1_BURCE FT (SWALL:P53607) (507 aa) fasta scores: E(): 2.7e-99, 54.58% FT id in 502 aa, and to Pseudomonas aeruginosa threonine FT dehydratase, biosynthetic IlvA1 or Pa0331 SWALL:Q9I6G0 FT (EMBL:AE004471) (504 aa) fasta scores: E(): 9.7e-146, FT 75.74% id in 503 aa" FT /protein_id="CAE36353.1" FT /translation="MSDTATAPTTAEPRTAPPARADLLAHYARKTLSAPVYDVALETPL FT QAAPRLSRQLDCRVLLKREDLQPVFSFKIRGAYNRVAQLSAEERRRGVIAASAGNHAQG FT LALAAARLGIPALIVMPRTAPELKIDGVLAHGAQVALHGDAFPAALAHAQALAEREGRV FT FIPPYDDPDVIAGQGTVGMEILRQHPGRLDAIFVPVGGGSLIAGVAAYVKHVRPEIRII FT GVEPVDSNCLQAALAAGRRVVLDRVGTFADGVAVAQIGHHNFEICRDHVDEVICVTNDE FT ICAAIKDIYDDTRSITEPAGALAVAGLRKYAERGEAAGRTLVAIDSGANINFDRLRHVA FT ERAALGEQREALIAVTIPERPGSFKAFCAALGPRQITEFNYRYHPGDEAQIFVGVRTHP FT EHDRRDALLAGLRGQGFAVQDLSDDELAKLHVRHMVGGRANQIDDEQVFRFEFPERPGA FT LFDFLSKLGGRWNITMFHYRNHGSADGRVVAGLQVPADERHLVPQALTRIGYPFRDETA FT NPSYRLFIR" FT misc_feature 1127716..1128597 FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme, score 1.2e-102" FT misc_feature 1127800..1127841 FT /note="PS00165 Serine/threonine dehydratases FT pyridoxal-phosphate attachment site." FT misc_feature 1128631..1128903 FT /note="HMMPfam hit to PF00585, C-terminal regulatory domain FT of Threonine dehydratase, score 2.7e-34" FT misc_feature 1128916..1129185 FT /note="HMMPfam hit to PF00585, C-terminal regulatory domain FT of Threonine dehydratase, score 1.9e-26" FT CDS 1129484..1129798 FT /transl_table=11 FT /locus_tag="BPP1053" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein Atu0477 or Agr_c_842 SWALL:AAL41496 (EMBL:AE009017) FT (107 aa) fasta scores: E(): 4.2e-09, 42.42% id in 99 aa, FT and to Brucella melitensis hypothetical protein Bmei0495 FT SWALL:Q8YIE9 (EMBL:AE009492) (96 aa) fasta scores: E(): FT 9e-08, 47.91% id in 96 aa" FT /protein_id="CAE36354.1" FT /translation="MDSATIINLVIQLVAGAAGGNGLAKAAHSLNLGTTGNTIAGAIGG FT LAGGTWLGPAIAAMAGGAASGMNVGAIVGDVVGGGIGGAVLTLIVGIIRNLFANKGSAA FT " FT misc_feature join(1129598..1129666,1129709..1129777) FT /note="2 probable transmembrane helices predicted for FT BPP1053 by TMHMM2.0 at aa 133-155 and 170-192" FT CDS complement(1129821..1130528) FT /transl_table=11 FT /locus_tag="BPP1054" FT /product="putative ArsR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2946" FT /protein_id="CAE36355.1" FT /translation="MDADHADTRLAAVAAAIADPARARMLCSLLDGCARTATELAALAD FT IGASSASAHFARLRAQGLVELAVQGKHRYYQLADADVAQALEALLVVAGVPRAPFKPAT FT PGPLCHARTCYDHMAGTVAVRLHDAMLAQRWLQPDGRDYRVTPAGAAALTSLGLDLGVI FT GRQRRRHAYACLDWSARRPHLGGALGAALLQCCLQHGWVEQQLDSRALRVTAQGARRFD FT AWCRPRGRLADAA" FT misc_feature complement(1130253..1130489) FT /note="HMMPfam hit to PF01022, Bacterial regulatory FT protein, arsR family, score 2.5e-13" FT CDS 1130732..1131898 FT /transl_table=11 FT /locus_tag="BPP1055" FT /product="putative acyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2945" FT /protein_id="CAE36356.1" FT /translation="MDSTLSPEHHEIRDAILQACRPFDADYWYRKDQDGGFPDDFHRAI FT AEAGWLGICIPQAYGGSGLGITEAAVMMQAVAESGAGMSGASALHMNIFGLNPVVKFGT FT EAQKQRVLPPLIRGEERTCFAVTEPNTGLNTTQLKTMAVRKGDRYVVHGAKTFISTASI FT AEKVLLLARTTPLEQVGRKTDGLSLFYTDFDRARIEVREIPKMGRKAVDCNQLFIDGLE FT IPADDLVGDEGKGFHYILHGMNAERVLVAAEAVGLGRCALARAARYARERVVFDRPIGQ FT NQGVQHPLAESWMELEAASLMTFHAAARFDRGESCGTEASAAKYLAAEAGFKACTAAVM FT THGGYGYAKEYHVERYLREALIPRIAPISPQMILNFVAEKVLGLPKSY" FT misc_feature 1130744..1131100 FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal domain, score 6.2e-07" FT misc_feature 1131104..1131418 FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 2.1e-06" FT misc_feature 1131428..1131877 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.7e-58" FT CDS 1131912..1132379 FT /transl_table=11 FT /locus_tag="BPP1056" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2944" FT /protein_id="CAE36357.1" FT /translation="MTLLDTEVRIYWEDLEPGTRFGTRKRTVTETDLVNFVNLTWLTEE FT LFSNGEPADRAHMGITGRVVPGGLVYVFAEGLVAPSFQAAGIAFLNAELDIKGPTFVGD FT TLHVECEVVQRRMTSRPGRGLVRTRNTVVNQHGEPVLVYTPLRMMRTRQIP" FT CDS 1132404..1133393 FT /transl_table=11 FT /locus_tag="BPP1057" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2943" FT /protein_id="CAE36358.1" FT /translation="MNSNRRRMLTAMAGMAGMTAFPFAHGSAGAWPERPIRLILPYAAS FT GPTDVVARRIAARLAERLGQQFIVENKPGAGGNIASEFVAKSAADGYTALYHSSGIAIA FT PALYSKMGYDPARDLAAVAMPASIPAIIIAGPALPASVATPAQFVQYLRDNPGKLSYGS FT GGVGNITHLAVELMLQETGTQATHAPYKGTAPAMVDLIGGRVHFMLDALSTALPAIREG FT RARAIAATSPQRAAVLPDVPTLAETVIPKFAATTWHGVFVPASTPAAVVARLNAQINLV FT AQEPELARQFAEQAVELHASTPAAFSAFLGEEIARWGTAAREAGVTPA" FT misc_feature 1132404..1132481 FT /note="Signal peptide predicted for BPP1057 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.443 between residues 26 and 27" FT misc_feature 1132428..1132496 FT /note="1 probable transmembrane helix predicted for BPP1057 FT by TMHMM2.0 at aa 9-31" FT misc_feature 1132554..1133381 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.6e-97" FT CDS complement(1133406..1134317) FT /transl_table=11 FT /locus_tag="BPP1058" FT /product="putative LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2942" FT /protein_id="CAE36359.1" FT /translation="MDLRQLQQFVVLSETLNFHRAAERLHMAQPPLSTAIRKLEDELGI FT VLFDRKPRSLSLTVAGAAMLKHARRTLSNVDELQRCAREYVSGDQGRIVVGFSNTASNA FT VLPRILHSFQARYPRVELVLHESTTHELVSELAAHTVNVALLRTPLFDACDAELIDLEQ FT DHFILAVPADHPLAQQSCARLADLDGQRFIAFSREKVPAMHAIISLAFGEAGVTPKVVQ FT QIVQVPTAIALAESGIGMALVPSAAARYLRTGARLLPVVDLPASLRIGIALGYDALTAS FT AATLRFVENTRAVHAAAPPPAA" FT misc_feature complement(1133430..1134062) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.7e-33" FT misc_feature complement(1134132..1134311) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.2e-25" FT misc_feature complement(1134177..1134269) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 1134443..1135564 FT /transl_table=11 FT /locus_tag="BPP1059" FT /product="putative racemase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2941" FT /protein_id="CAE36360.1" FT /translation="MGPLQGTRVVELAGIGPAPMACMLLADLGAEVVRIERAEPVELGV FT ARPARYNLLMRNRCLVAADLKQPAMVEQALDLVARADVLVEGFRPGVAERLGLGPQACQ FT ARNPRLVYGRMTGWGQSGPLAQAAGHDLNYVALTGIIHAIGRAGQPPSIPLALTGDMAG FT GALYLALGVLAALLERGRSGLGQVIDAAIVDGAASLATVFYGLCAAGLWQDARGTNILD FT GGAPFYDVYECADGAWISVGPIEARFYAQLLEKLELRAQDVGARDDRAAWPRARMAIAS FT RFRTRTRDAWCALLEGSDVCFAPVLSFAEAPAHAHLKARGTFVEVDGVVQPAPAPRFGR FT TPPATPRPPSESPDSTLAAVLARWAAEDEARRG" FT misc_feature 1134623..1135198 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.7e-64" FT CDS complement(1135561..1136811) FT /transl_table=11 FT /locus_tag="BPP1060" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2940" FT /protein_id="CAE36361.1" FT /translation="MPAHRNPPMSRSLASALPAAPGAAPARHGRVVALVVGAGIVSAMQ FT VGKVPAALPELRAALDASLAQASWLLSAFAAIGAALGAGVGMAVDAWGARRMAVAGMLA FT QGVASLLGAMAGAIGWLLALRVAEGIGFLAVVVSAPSLIVAATGTAPARARALAAWSTF FT MPLGVAAAMLSAPALEYLGWSGMWRLYGLALLAYACWLAWGTRGLPGRAAARRTTLAGL FT RATLAAPGPRLYAMLFGLYTAAYFSIFGFLPSILAERLHVAPWAAGPLAALVVSACVAG FT NLGGGALLARGVPRTRLMAAGFVLLALGTAVTMAPGVPGAAAYLACLAASALCGLVPTA FT LLAGAPQHAPRPELAGATMGIIMQGNNTGLLVGPAVAGAIAGAWGWTWVAAWVGLLALA FT ALGLIARLARTPRERAP" FT misc_feature complement(join(1135597..1135647,1135660..1135716, FT 1135780..1135845,1135858..1135923,1135945..1136010, FT 1136056..1136121,1136182..1136247,1136278..1136343, FT 1136359..1136424,1136440..1136505,1136545..1136610)) FT /note="11 probable transmembrane helices predicted for FT BPP1060 by TMHMM2.0 at aa 67-89, 102-124, 129-151, 156-178, FT 188-210, 230-252, 267-289, 296-318, 322-344, 365-384 and FT 388-405" FT misc_feature complement(1136725..1136811) FT /note="Signal peptide predicted for BPP1060 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.757) with cleavage site FT probability 0.368 between residues 29 and 30" FT CDS 1136912..1137784 FT /transl_table=11 FT /locus_tag="BPP1061" FT /product="putative LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2939" FT /protein_id="CAE36362.1" FT /translation="MRTFAAVAQAGSFRAGAARLHRVQSAVSHAIANLEAQLRVTLFDR FT SVYKPVLTPAGQALLADVRIILAKVDALRAHAHELGEGVELGLSLAVDTLFPPDAVAHA FT LKAMHARYPSVGVRVEYASLGGPAQALKARRCTLAVAVLERPDDQIRRRFLAPVTTWAV FT AAPGHPLARGEAGTELADHLQVVVEDLSAATRGRDYGVLSPRTWRVGDMVTKLALLRAG FT VGWGSLPAWLVQADLRAGTLVRLPLAELGPDGAVQMRAYLSHRADEPLGPAARSLCDSL FT REGAAALRG" FT misc_feature 1136912..1137082 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.8e-15" FT misc_feature 1136945..1137037 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1137152..1137769 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 6e-24" FT CDS 1137901..1138506 FT /transl_table=11 FT /locus_tag="BPP1062" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2938" FT /protein_id="CAE36363.1" FT /translation="MFQRFELAQLPVSPWRNGGGATREVARHPQGAAADGFEWRVSVAD FT IGADGPFSAYPGIDRSITLLEGAGVRMRSADGTLDHLLDVALRPFAFAGEHAIDATLLG FT GPSRDFNVMTRRGRWRAEARVLHGQAVLAPAPAGVLFAAGGDWRVQCDAGQALLRAGAG FT VVWRAAAGAIHATPLGGEGGLIAVRLLEAGATAVAPDA" FT CDS join(1138623..1139138,1139137..1139478) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1063" FT /product="conserved hypothetical protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2937" FT /db_xref="PSEUDO:CAE36364.1" FT misc_feature join(1138632..1139138,1139137..1139382) FT /note="HMMPfam hit to PF02678, Uncharacterized BCR, YhhW FT family COG1741, score 1.3e-08" FT variation 1139136..1139138 FT /note="GCG in parapertussis; GCG(GGGCCGGCGCG) in pertussis" FT CDS 1139661..1140569 FT /transl_table=11 FT /locus_tag="BPP1064" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2936" FT /protein_id="CAE36365.1" FT /translation="MSPSPLISHRAASADLAGMVRQARQRILLQGNVPGFDVARQIELL FT HGLAESELGRFLLLYRGLNAEWTHRLVTHQPGSGALAPLERVFYERLPAVLATRERHGH FT FRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH FT ALAGQITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT FT SFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFT FT DLRFEDDRARLFPTVIARKPA" FT CDS 1140764..1141975 FT /transl_table=11 FT /locus_tag="BPP1065" FT /product="putative two component system, histidine kinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2935" FT /protein_id="CAE36366.1" FT /translation="MSGSSALSFLRTLCSLRWLAIAGQAVTIVAVSSVLELDLPLRPLW FT LGVLVLVVFNLYASWRLRRLSDVSYVTAFAHLLVDIGVLAWMVGWSGGITNPFGLMFLI FT LTALAALALPSNWALATGLASLAGYTLAAIFGQPLRHEDTYTLLLGGLAFNFVISIGVV FT LYFSTRLAADMRARERELAALRERFTRNEGIVALATHAAAMAHELNTPLATMTLLADEI FT AAQASTVDLRNDVDTLQQLLTLCRERIRNLAVPTEVDLVRVVGQWRLVRPTVDLHRTGS FT LPASLRVDPAIAHLLQALLNNAADAGEAAGEPRVDLRLDYRDGVLTGEVSDHGAGFDPS FT HTLLPATSLFNSGKPGGLGVGLALSHATVEQLGGAMTMTAAEGGGARIRFTLPLGLGRA FT SAKP" FT misc_feature 1140764..1140829 FT /note="Signal peptide predicted for BPP1065 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.650) with cleavage site FT probability 0.291 between residues 22 and 23" FT misc_feature join(1140800..1140868,1140878..1140946,1140965..1141033, FT 1141043..1141102,1141115..1141168,1141196..1141264) FT /note="6 probable transmembrane helices predicted for FT BPP1065 by TMHMM2.0 at aa 13-35, 39-61, 68-90, 94-113, FT 118-135 and 145-167" FT misc_feature 1141349..1141534 FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 0.0063" FT misc_feature 1141532..1141573 FT /note="PS00213 Lipocalin signature." FT misc_feature 1141622..1141948 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 7.5e-16" FT CDS 1141972..1142526 FT /transl_table=11 FT /locus_tag="BPP1066" FT /product="putative two component system response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2934" FT /protein_id="CAE36367.1" FT /translation="MNLSEPGLLIDDDELYLRTLQRSLARQGLETRTAASIAEALRVAE FT DIRPSFALVDLRLGEEDSGLTLIRPLRALRADMRILLVTGYASVATAVEAIKRGADDYL FT PKPATAPMILRTLGLLKAESVTIESTMTPLHRLEWEHIQQALSETGGNVSAAARLLGMH FT RRSLQRKLAKKPGPEREAQLD" FT misc_feature 1141993..1142343 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 1.2e-17" FT misc_feature 1142371..1142493 FT /note="HMMPfam hit to PF02954, Bacterial regulatory FT protein, Fis family, score 1.4e-11" FT CDS 1142735..1143649 FT /transl_table=11 FT /gene="cyoA" FT /locus_tag="BPP1067" FT /product="putative ubiquinol oxidase polypeptide II" FT /note="ortholog of Bordetella pertussis (BX470248) BP2933" FT /protein_id="CAE36368.1" FT /translation="MKHPHLATIARTLGVGAVLLLGGCTLEVLSPKGDIGAQEKTLILT FT ALGLMLIVVVPVILMTLYFVWKYREGSVPAQREYAPKWSHSNAIEAVVWTVPCIIVAIL FT AVLTWKSSHALDPYRPIESDVKPVNIDVVSLDWKWLFIYPDYDIATVNEIVFPVDAPVQ FT FRITSASVMNSFFIPQLGSQIYSMAGMETKLHLIAREAGSYDGLSANYSGAGFSGMRFK FT AIATTDQGFEDWIARIRATNNPLTPQAYADLARPSERTPVTLYSTAPTGMFDFIMHNQM FT SKLAGVDPFNCTPATKNLIATAE" FT misc_feature join(1142753..1142821,1142864..1142932,1142993..1143061) FT /note="3 probable transmembrane helices predicted for FT BPP1067 by TMHMM2.0 at aa 7-29, 44-66 and 87-109" FT CDS 1143650..1145632 FT /transl_table=11 FT /gene="cyoB" FT /locus_tag="BPP1068" FT /product="ubiquinol oxidase polypeptide I" FT /note="ortholog of Bordetella pertussis (BX470248) BP2932" FT /protein_id="CAE36369.1" FT /translation="MMFGKLSLEAIPFHDPIIMGTMVVVILGGATLLGAVTYFGKWKYL FT WTEWFTSVDHKKIGIMYIIVALVMLLRGFADAIMMRTQQAVASADSAGFLPPHHYDQIF FT TAHGVIMIFFMAMPFITGLMNIVVPLQIGARDVAYPFLNSLSFWLFMVGVVLLMLSLFV FT GEFAATGWLAYPPLSGLDYSPGVGVDYYLWALQLSGLGTTLSGINFIVTIMKMRAPGMA FT LMKMPVFTWTALVTNILIVAAFPVLAATLALLTLDRYLDMHFFTNDLGGNVMMYVNLIW FT IWGHPEVYILVLPCFGVFSEIVATYSKKTLFGYKSMVYATASIGVLSFLVWLHHFFTMG FT AGANVNAFFGIMTMIISIPTGAKVFNWLFTMYRGRVEFSLPMLWTIGFMIIFVIGGMTG FT VLMAIPAVSFVLHNSLFLVAHFHNTIIGGVVFGCIAGMVYWFPKAFGFKLNERLGKYSF FT WCWFVGFFLTFTPMYLLGFKGMTRRLNTYDNPEWQPYLLVALVGATLIMLGIFFLLQQV FT FVSIRDRKENMDVTGDPWGGRTLEWSTSSPPPFYNFAHVPHIDSLDQFWEDKENGRAYQ FT RPAKYEDVHMPRNTAAGIYIGAFGLAMSFGLIWHMWWLAIVGFLGMIVSFVVRSYDRDV FT DYYVPAKEVEEIENAYFGKLQQKAA" FT misc_feature join(1143692..1143760,1143821..1143889,1143965..1144033, FT 1144070..1144138,1144217..1144285,1144346..1144414, FT 1144478..1144546,1144580..1144648,1144691..1144759, FT 1144796..1144864,1144907..1144975,1145012..1145080, FT 1145123..1145191,1145417..1145470,1145480..1145533) FT /note="15 probable transmembrane helices predicted for FT BPP1068 by TMHMM2.0 at aa 15-37, 58-80, 106-128, 141-163, FT 190-212, 233-255, 277-299, 311-333, 348-370, 383-405, FT 420-442, 455-477, 492-514, 590-607 and 611-628" FT misc_feature 1143791..1145167 FT /note="HMMPfam hit to PF00115, Cytochrome C and Quinol FT oxidase polypeptide I, score 2.3e-258" FT misc_feature 1144490..1144654 FT /note="PS00077 Heme-copper oxidase catalytic subunit, FT copper B binding region signature." FT CDS 1145636..1146247 FT /transl_table=11 FT /gene="cyoC" FT /locus_tag="BPP1069" FT /product="cytochrome O ubiquinol oxidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2931" FT /protein_id="CAE36370.1" FT /translation="MTNAVATHPHVGDHHGHHDDGSKTVLGFWIYLMSDLLIFSVLFAT FT FAVLSSATAGGPTGKDLFDLSFVLGETMLLLVSSFTFGMAMLNLHAGSKGKVIAWLWVT FT FLFGAGFIVMEVYEFHHLLSIGAGPQTSAYLSAFFTLIGTHGLHVTFGLIWILVMIHML FT SRYGIDPITTRRLSCLSLFWHFLDIVWICVFTFVYLLGAL" FT misc_feature 1145636..1146241 FT /note="HMMPfam hit to PF00510, Cytochrome c oxidase subunit FT III, score 0.0017" FT misc_feature join(1145714..1145782,1145840..1145908,1145927..1145986, FT 1146044..1146112,1146173..1146241) FT /note="5 probable transmembrane helices predicted for FT BPP1069 by TMHMM2.0 at aa 27-49, 69-91, 98-117, 137-159 and FT 180-202" FT CDS 1146247..1146594 FT /transl_table=11 FT /gene="cyoD" FT /locus_tag="BPP1070" FT /product="cytochrome 0 ubiquinol oxidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2930" FT /protein_id="CAE36371.1" FT /translation="MSHAVTSEDHGHANHGSLKSYLIGFAISLVLTFGSFGLVMAGTVP FT RSIALAGVVVLCVAQLLVQLVFFLHMGGSKKQRDNVTTFVFTILIIAIIVGGSVWVLHN FT MNANMMHPMPG" FT misc_feature 1146289..1146549 FT /note="HMMPfam hit to PF03626, Prokaryotic Cytochrome C FT oxidase subunit IV, score 5.3e-31" FT misc_feature join(1146307..1146375,1146385..1146453,1146487..1146555) FT /note="3 probable transmembrane helices predicted for FT BPP1070 by TMHMM2.0 at aa 21-43, 47-69 and 81-103" FT CDS complement(1146712..1147059) FT /transl_table=11 FT /locus_tag="BPP1071" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2929" FT /protein_id="CAE36372.1" FT /translation="MLPNHPERGQIRLENVLNALGNPLRLTVVRALAAGGECSCSAVLQ FT GIPKSTLTHHWRVLRDSGVIWQRPNGRENLLSLRRDDLDARFPGLLDTLLGAVHHDALT FT EETTARNLAPR" FT misc_feature complement(1146769..1147011) FT /note="HMMPfam hit to PF01022, Bacterial regulatory FT protein, arsR family, score 0.006" FT CDS join(1147199..1147792,1147792..1148622) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1072" FT /product="putative membrane transport protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2928" FT /db_xref="PSEUDO:CAE36373.1" FT misc_feature join(1147235..1147303,1147346..1147405,1147442..1147501, FT 1147514..1147582,1147619..1147687,1147703..1147771, FT 1147808..1147867,1147880..1147948,1147985..1148053, FT 1148096..1148164,1148201..1148269,1148282..1148350, FT 1148411..1148470,1148513..1148581) FT /note="14 probable transmembrane helices predicted for FT BPP1072 by TMHMM2.0 at aa 13-35, 50-69, 82-101, 106-128, FT 141-163, 169-191, 204-223, 228-250, 263-285, 300-322, FT 335-357, 362-384, 405-424 and 439-461" FT variation 1147793..1147794 FT /note="GC in parapertussis; GC(GCGCCGC) in pertussis" FT misc_feature 1148503..1148535 FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT CDS complement(1148654..1149151) FT /transl_table=11 FT /locus_tag="BPP1073" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2927" FT /protein_id="CAE36374.1" FT /translation="MSRFACRLHAHAIRCFERIPHCLIALLGRCSIAATFWLSGQTKVE FT GFAVNALAGEFDLGWPMLSESAISLFRDEYQVPLLPPELAALLAASVEHILPVLLILGL FT ATRWSALGLLLMTLVIQVFVYPDAYATHGVWATVLLYLVARGPGCVSLDAWLARRRARR FT QG" FT misc_feature complement(join(1148681..1148746,1148792..1148857)) FT /note="2 probable transmembrane helices predicted for FT BPP1073 by TMHMM2.0 at aa 98-120 and 135-157" FT CDS complement(1149155..1149910) FT /transl_table=11 FT /locus_tag="BPP1074" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2926" FT /protein_id="CAE36375.1" FT /translation="MHPQAAFARALLDPLAPCPPGLRRAGDADPAQRYAIYRNNVVASL FT IQALADTFPVCRELVGPDFFHAMAHAYVARRLPRSPVLARYGGAFAAFVAAHAPAAGVP FT YLADMARLEYLRVRAYCAADAVALDAAAAGARIAALSKPASARLRLHPAARALVSPYAI FT HALWAAHQGALDIAEVDPYAAQGALVLRDPAEAVLAIPLAASAAAFVRALRAGLPLSAA FT HSQAADPGLALDHLLALLIRHGAVISIEE" FT CDS complement(1149925..1150794) FT /transl_table=11 FT /locus_tag="BPP1075" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2925" FT /protein_id="CAE36376.1" FT /translation="MPARASRPAPGLPARAGLGFKPEHYATLVEQPPDLGFFEIHAENY FT MVPGGPAHAQLAWLRERYAISVHGVGLSLGGHDPLDARLLAGHRQLQRRYAPDSISEHL FT AWSRHDGRYFNDLLPIVYDDAALRRVCAHIDQFQQCLGQPILLENPATYVRFEASHIDE FT AQFLCELVARTGCGLLLDVNNVYVSAVNHGFDARAYLARLPLAAVGEIHLAGHARQRDA FT HGRAVLIDSHDAPVDEAVWDLYEYTLALTGPVATLLERDGNIPPLAALLAETGRVAACL FT ARGLALAA" FT CDS complement(1150806..1151138) FT /transl_table=11 FT /locus_tag="BPP1076" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2924" FT /protein_id="CAE36377.1" FT /translation="MLAVFFTLRSSFMKTSTTAMLTLALSSAAVLAAAPAAHATDMEKC FT YGVALKGKNDCKAGAGTTCAGTSKVDYQGNAWKQVPKGTCEQTKSPTSPTGFGQLEAFK FT EVKTGS" FT misc_feature complement(1151022..1151138) FT /note="Signal peptide predicted for BPP1076 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.861 between residues 39 and 40" FT misc_feature complement(1151028..1151093) FT /note="1 probable transmembrane helix predicted for BPP1076 FT by TMHMM2.0 at aa 15-37" FT CDS 1151414..1151851 FT /transl_table=11 FT /locus_tag="BPP1077" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2923" FT /protein_id="CAE36378.1" FT /translation="MIQTGSRSRRLLARPLAWIALLAILWAACAPLLMQMAPQRHAPLA FT LSVDYCTEQGTATVQLPLLLADAGQADEHDGHGAHHDGLGHLEHCPFCRHAQGDLALLP FT VMPRVQPLPARAISYPPLYYVARASQHAWTGAQPRAPPAAA" FT CDS 1152014..1154212 FT /transl_table=11 FT /gene="bfrG" FT /locus_tag="BPP1078" FT /product="putative TonB-dependent receptor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2922" FT /protein_id="CAE36379.1" FT /translation="MKQTSLYYAALGLAGLALAAPACAQEQQVPAQLETVVVHGAPEAN FT GPLDLDAVDSTGSRLGLTLRETPASVTVINREQIEARGALDTQEIARGIVGVDNASPPG FT SAGSVSYRGFSGSQVSQLFNGISVQYDVIAARPIDSWIYDRVEAIGGPSSFLFGAGAVG FT GAINYVTKVAQRDTFYDGQLRLGSYGARQASVGLNRQLAGEPGGRGQYLRIDANANASD FT GWVDGNRSHAEQVAASLLSDLGERVTHTLALEYQHETVHRPYWGTPLTTDGDGVVRGEG FT HIRGGTRFKNYNVDDGQYEQSVWWLRSLTEWQASDRLSFRNTLYYYRADRDFQNLETYR FT YNLGNSQVLRSGALLQRHEQRLLGNRIEALYHGSLGGLRSDWSFGADYSVNRQTRYPTS FT VAGQVDSVDPYEFDPGEFYDIPGMRRGHVPDRDNKVRTLAFMLENRTEVGGGVALVTAL FT RHDIIDLDLTNRRAASAASPGHASRRYNPTTGRVAVNWEVSPGATLYAQYATAADPPSG FT VLSTATFADVLNNDKLTTGIQVEAGGKFAFWDGRGTATVAVYEIKRKNLATPDPLNPGS FT SLPVGSQSARGLELAGGLQLTRALSLQANLALVDPRYDDFSQNVGGVAVSRNGKVPVNT FT PRRLANVWLDYAFAPDWRASLAARHVGKTYADAANTVWAPAYTVFDAALSHRIDRHFSV FT MARVRNLTDKVYAASVTGAPMYYLGAPRSVELALQARF" FT misc_feature 1152014..1152136 FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT misc_feature 1153901..1154206 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region, score 2e-16" FT misc_feature 1153982..1154005 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1154224..1155693 FT /transl_table=11 FT /locus_tag="BPP1079" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2921" FT /protein_id="CAE36380.1" FT /translation="MTTLVLRAKRWLYLLHRWMGVGLCLLFVLWFASGVVMMYVGYPKL FT TPAERLAHLPWLDAAQVRLGPAQALRAAGLEQAAEIRLAASRAGQPFYAVVPLAGGRTL FT RVDAASGQLAGRATPAQARASALAYFGARHAAREDGLVDEDAHTHTRTLDAHRPLYVFE FT MDDPARTRLYVSSSTGEVVRDAPRLERGWNYVGAWLHWLYPLRGAYWHDIVVWLSVLGV FT ALTVSGTVVGLWRWRFARPYASGSRSPYRERFMRWHHIAGLLFAATTLTWIFSGLMSMN FT PWQVFGTRATQLDRAAYRGGPLQAGNLPAGPAVAMPARELVWTRVAGQTLLQVYGAAGA FT AALRTADGAAPRTLAPATLGAALGRLLPGAAPPRIEVLDGYDSYYYARAPHTMLGHVEK FT PLPVWRVVYDDPRGTWLHVDPRNGEILGSLDRPRRVSRWLFAFLHSWDWPPLLQRRPAW FT DAVLIVLSLGGLLLSGAGVVIGWRRVGRKLR" FT misc_feature 1154224..1154337 FT /note="Signal peptide predicted for BPP1079 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.906) with cleavage site FT probability 0.734 between residues 38 and 39" FT misc_feature join(1154281..1154349,1154863..1154931,1154992..1155060, FT 1155595..1155663) FT /note="4 probable transmembrane helices predicted for FT BPP1079 by TMHMM2.0 at aa 20-42, 214-236, 257-279 and FT 458-480" FT CDS complement(1155696..1156925) FT /transl_table=11 FT /locus_tag="BPP1080" FT /product="putative chromate transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2920" FT /protein_id="CAE36381.1" FT /translation="MPASPPPPAPGTPPSQAEAGGVGEVFGAFLRLGLTSFGGPVAHLG FT YFRHEFVQRRRWLDDAAYAELVALCQFLPGPASSQTGMALGLARAGWAGMAAAWIAFTL FT PSALFMLAFVLGLGQLDGLAASGALHGLKLAAVAVVAQAVWSMGRSLCPDRARQALALG FT AAIAALLLPAAWMQVGIMLACGLAGWRLLPALAAPAGTALAVGVGRRTGLCALLLFAVL FT LAGLPLWAAASGSPAWQLADGFYRAGALVFGGGHVVLPLLQAAVVPGGEVSQAAFLAGY FT GAAQAVPGPLFSFAAFLGALLPAPLGGWPGALACTALIFLPGALLLVGALPFWNVLRGR FT PAVRAALAGVNAGVVGILLAALYDPVWTGAVASRPDFAIAAGAFGLLAWGRLPPLAIVA FT LCAAAGALAG" FT misc_feature complement(1155702..1156223) FT /note="HMMPfam hit to PF02417, Chromate transporter, score FT 0.0024" FT misc_feature complement(join(1155702..1155767,1155813..1155878, FT 1155918..1155983,1156029..1156094,1156116..1156181, FT 1156227..1156280,1156302..1156367,1156383..1156448, FT 1156488..1156553,1156584..1156649,1156785..1156850)) FT /note="11 probable transmembrane helices predicted for FT BPP1080 by TMHMM2.0 at aa 25-47, 92-114, 124-146, 159-181, FT 186-208, 215-233, 248-270, 277-299, 314-336, 349-371 and FT 386-408" FT misc_feature complement(1156344..1156868) FT /note="HMMPfam hit to PF02417, Chromate transporter, score FT 3.4e-21" FT misc_feature complement(1156524..1156556) FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT CDS 1157150..1157737 FT /transl_table=11 FT /locus_tag="BPP1081" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2919" FT /protein_id="CAE36382.1" FT /translation="MQSGDTLHSIARKHGQSVGDLVRWNKLANANRIEKGQLLRVKPPG FT TGGSASPPPRAASGKSDGQAPAKPAAPIRGITLIWPADGKVTRQFNGSSVLGITIANSA FT GTSVVAAAGGTVAYASNGLRGYGNLVIVRHDGSFLTIYAHNRKLLVKQGQRVSQGQRIA FT EMGDTDSSQVNLYFELRRDGKAVNPAGALPRR" FT misc_feature 1157150..1157275 FT /note="HMMPfam hit to PF01476, LysM domain, score 2.5e-07" FT misc_feature 1157414..1157461 FT /note="PS00012 Phosphopantetheine attachment site." FT misc_feature 1157474..1157722 FT /note="HMMPfam hit to PF01551, Peptidase family M23/M37, FT score 4.9e-33" FT CDS 1157859..1158272 FT /transl_table=11 FT /locus_tag="BPP1082" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2918" FT /protein_id="CAE36383.1" FT /translation="MATEIYVNLPVADLPRSVAFFKQLGYAFNPQFTDENATCMIVDDN FT IYVMLLVESFFQTFTPKAVCDAHTQTEVLLCLSMDSRAEVDRMVRRAVAAGGKTYNEAK FT DHGFMYQHGFQDLDGHIWELVYMDPTAAPPPGD" FT misc_feature 1158132..1158155 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1158280..1158732) FT /transl_table=11 FT /locus_tag="BPP1083" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2917" FT /protein_id="CAE36384.1" FT /translation="MLYASLKFLHLLSIILWVGGMAFAHCFLRPAVAALEPPARLRLMH FT DVLGRFLRATQYAVLIVLATGAYMMAQAMGAGLARPPVGWHVMAGLGLLMALVFVHVRY FT VLFRRLARAVAAQDWPAGGAAMAPIRGWVAVNLALAVVILAALMLA" FT misc_feature complement(join(1158286..1158351,1158412..1158477, FT 1158508..1158573,1158637..1158702)) FT /note="4 probable transmembrane helices predicted for FT BPP1083 by TMHMM2.0 at aa 10-32, 53-75, 85-107 and 127-149" FT misc_feature complement(1158634..1158732) FT /note="Signal peptide predicted for BPP1083 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.984) with cleavage site FT probability 0.860 between residues 33 and 34" FT CDS 1158863..1159345 FT /transl_table=11 FT /locus_tag="BPP1084" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2916" FT /protein_id="CAE36385.1" FT /translation="MPSFDVVSEVDKHELTNAVDQANRELSTRFDFKGTNASFELEGYV FT VTQVAPSAFQLKQMLDILRGRLSARSIDVRCMDVADPLENLGGARQKVTIKQGIEQAIA FT KKLIAAIKASKVKVESQINGEKLRITGKKRDDLQAVIALLRKTDVDLPLQFENFRD" FT CDS 1159485..1159853 FT /transl_table=11 FT /locus_tag="BPP1085" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2915" FT /protein_id="CAE36386.1" FT /translation="MSIRHTAALLLVSSLYAGAALAQAPAMEKGGMLVDAKGMTLYTFD FT KDAGGKSVCNDQCAKNWPPLMAAGDAKAQGDWSIVKRDDGSSQWAHKGKPVYLFAADAK FT PGDKTGDNKNNVWHVIKP" FT misc_feature 1159485..1159550 FT /note="Signal peptide predicted for BPP1085 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 22 and 23" FT misc_feature 1159503..1159562 FT /note="1 probable transmembrane helix predicted for BPP1085 FT by TMHMM2.0 at aa 7-26" FT misc_feature 1159548..1159691 FT /note="HMMPfam hit to PF03640, Secreted repeat of unknown FT function, score 2.1e-11" FT misc_feature 1159713..1159847 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03640, Secreted repeat of unknown FT function, score 5.8e-12" FT CDS 1159904..1160431 FT /transl_table=11 FT /locus_tag="BPP1086" FT /product="putative RNA polymerase sigma factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2914" FT /protein_id="CAE36387.1" FT /translation="MRPEDEALIVACIPSLRRYARGLTGERDRADDLVQDTLERAWSRF FT SRWQRRGELRAWMFGIMHNQFIDGLRAQKRQADYGAETEIPELPVRATQADRLEVRDLD FT RHLQRLPADLRAVLLLVAVEEFTYREAAQVLEVPIGTVMSRLSRARERLAALLQVQAEA FT PAASTVQRIRAT" FT misc_feature 1159955..1160122 FT /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF FT subfamily), score 5.6e-08" FT CDS 1160428..1161219 FT /transl_table=11 FT /locus_tag="BPP1087" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2913" FT /protein_id="CAE36388.1" FT /translation="MSEHPFHVLDVPGAPIGEADLHAYADGQLGDARRAEVAAFLAAHP FT EAHARVEGWRRQNAGLRALLDPVLEEPLPLRLPPARYRWGMLAAGLAIAVTSASAAWLV FT RGELDARQAVAQRQAAAEGMVFARRAAVAHAVYAADVRRPVEMGAEQEQALVTWLTRRL FT GAAVHAPNLAAAGYHLMGGRLLPGGQGPVAQFMYGGPGGQRLTLYVTREAQGDQTAFRF FT TQDGPVRVFYWVEGKFGYALSGELERDALLKVAQEVYRELG" FT CDS complement(1161241..1162032) FT /transl_table=11 FT /locus_tag="BPP1088" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2725" FT /protein_id="CAE36389.1" FT /translation="MSTLYTLTRGDAPLVVNIPHVGTWVPAELRPLMQAEALGVPDTDW FT HVDRLYDFVRARGVTLMAATHSRYVIDLNRDPDGGVLYPGASNTELCPTTRFDGGPVWR FT DEAAGHPLLDVAARRRQYFDPYHAQLAAELARVQARHGYAVLLDGHSIISHCARFFDGK FT LPDLNLGTADGASCPPGLQQAAAQALQADGFTTAVNGRFKGGWITRHYGRPAEGYHALQ FT LEMSLSAYMTEQAPFHWQPERAEPLRQVLETLVAALLAWRA" FT CDS complement(1162064..1162768) FT /transl_table=11 FT /locus_tag="BPP1089" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2726" FT /protein_id="CAE36390.1" FT /translation="MSTEKTAIVTAGGSGMGAAAARRLAADGFRVAILSASGKGEALAA FT ELGGLGMTGSNLEPADLQALVDATLQRWGRIDAVVNSAGHGPKGALLEIDDAGWHAGMD FT YYLLNVVRIARLVTPVMREQGGGSIVNISTYATFEPEAAFPTSGVLRAGLAAFTKLYAD FT QYAADNVRMNNVLPGFIDSLPEKEDRRARIPMGRYGRAEEVADLIAFLASSQSSYITGQ FT NIRIDGGITRSV" FT misc_feature complement(1162079..1162762) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 1.8e-42" FT misc_feature complement(1162694..1162768) FT /note="Signal peptide predicted for BPP1089 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.973) with cleavage site FT probability 0.754 between residues 25 and 26" FT CDS complement(1162843..1163643) FT /transl_table=11 FT /locus_tag="BPP1090" FT /product="exported SurF1-family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2727" FT /protein_id="CAE36391.1" FT /translation="MTHPAQQNAAGGREPAPTRRPRSAATLIILAALAAALFAGACALG FT VWQIHRLAWKRNLIAQVETRAHAPATPAPAPADWPGLSNANAEYRRVAASGTWHYAGQT FT LVQAATELGSGYWVMTPLRLDGGGTVLVNRGFVLPEWRRQQSAGDAARPDAPARVEGLL FT RMGEPAGGFLRENKPAAELWYSRDLPAIAARRGLGEVAPYFIDADAAAGAPRNPAQAPV FT GGLTVLSFPNNHLGYAITWFGLAAMVLAGAAIVARHELRARRRG" FT misc_feature complement(1162849..1163643) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02104, SURF1 family, score 9.4e-07" FT misc_feature complement(join(1162876..1162941,1163497..1163562)) FT /note="2 probable transmembrane helices predicted for FT BPP1090 by TMHMM2.0 at aa 27-49 and 234-256" FT misc_feature complement(1163521..1163643) FT /note="Signal peptide predicted for BPP1090 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.854) with cleavage site FT probability 0.634 between residues 41 and 42" FT CDS complement(1163640..1164047) FT /transl_table=11 FT /locus_tag="BPP1091" FT /product="cytochrome ubiquinol oxidase subunit IV" FT /note="ortholog of Bordetella pertussis (BX470248) BP2728" FT /protein_id="CAE36392.1" FT /translation="MSERTEHAADLPPPHGAGHHHEDDDGPHGTLASYLTGFVLAAILT FT AIPFWLVMDGVFASSRTTALVILAFAVVQIVVHLVYFLHMDAKSESGWNMLALIFTLVL FT VVITLSGSIWIMYHLNSNMMPMSVHDVRNMP" FT misc_feature complement(join(1163697..1163762,1163802..1163858, FT 1163889..1163954)) FT /note="3 probable transmembrane helices predicted for FT BPP1091 by TMHMM2.0 at aa 31-53, 63-82 and 95-117" FT misc_feature complement(1163703..1163966) FT /note="HMMPfam hit to PF03626, Prokaryotic Cytochrome C FT oxidase subunit IV, score 1.5e-42" FT CDS complement(1164044..1164565) FT /transl_table=11 FT /locus_tag="BPP1092" FT /product="cytochrome ubiquinol oxidase subunit III" FT /note="ortholog of Bordetella pertussis (BX470248) BP2729" FT /protein_id="CAE36393.1" FT /translation="MSDCLVFACLFATYGVVGRNYDGGPTGAELFDLPLVAVNTSLLLL FT LSSITYGFAMLEMRRQRIGATQAWLAVTGLLGAGFLGLELYEFAHLIHQGAGPQRSAFL FT SAFFTLVGTHGLHVTFGIVWLVTLMVQVSRHGLIPENRRCLMCLSMFWHFLDLIWVGVF FT TFVYLMGVLP" FT misc_feature complement(join(1164053..1164118,1164182..1164247, FT 1164293..1164358,1164398..1164463)) FT /note="4 probable transmembrane helices predicted for FT BPP1092 by TMHMM2.0 at aa 34-56, 69-91, 106-128 and FT 149-171" FT misc_feature complement(1164053..1164556) FT /note="HMMPfam hit to PF00510, Cytochrome c oxidase subunit FT III, score 0.00029" FT CDS complement(1164678..1166699) FT /transl_table=11 FT /locus_tag="BPP1093" FT /product="cytochrome ubiquinol oxidase subunit I" FT /note="ortholog of Bordetella pertussis (BX470248) BP2730" FT /protein_id="CAE36394.1" FT /translation="MAHAEIDMTDQPDQTLLLGRLSWEAIPYHEPILLVTFIVVALGGI FT ALLGAITYMRAWGYLWREWFTSIDHKKIGIMYVVLGIVMLLRGFADAIMMRLQQAIAFG FT DNLGYPPPHHYDQIFTAHGVIMIFFVAMPLVTGLMNYIVPLQIGARDVAFPFLNNFSFW FT MTATGAVLVMMSLFVGEFARTGWLAYPPLSGILHSPDVGVDYYIWALQIAGVGTLLSGV FT NLLVTIVKMRAPGMTLMRMPVFTWTALCTNILIVAAFPVLTAVLALLSMDRYVGTNFFT FT ADGGGNAMMYVNLVWIWGHPEVYILILPAFGIFSEVVATYCRKRLFGYASMVYATVVIT FT VLSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIHFEVPMLW FT TLGFMVTFVIGGMTGVLLAVPPADFALHNSLFLIAHFHNVIIGGVLFGLMAGITYWFPK FT AFGYRLDPFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRVNHFEDASLQIWFQAAALG FT ALLIALGIANFLIQLVVSYRRREALRDDTGDPWDGRTLEWSTSSPPPAYNFAFTPRVHD FT LDAWWQMKQCGYARPQQGFVPIHMPSNTWAGIVLAGLSGVLGFALIWHMWPLVVLAFAA FT LIGVTIAHTFNYQRDHYVPAEEVVRCEAARTALLSRHV" FT misc_feature complement(join(1164774..1164839,1164852..1164917, FT 1165110..1165175,1165215..1165280,1165344..1165409, FT 1165440..1165505,1165545..1165610,1165656..1165721, FT 1165743..1165808,1165887..1165952,1166013..1166078, FT 1166166..1166231,1166271..1166336,1166415..1166480, FT 1166541..1166606)) FT /note="15 probable transmembrane helices predicted for FT BPP1093 by TMHMM2.0 at aa 31-53, 73-95, 121-143, 156-178, FT 207-229, 249-271, 297-319, 326-348, 363-385, 398-420, FT 430-452, 473-495, 508-530, 594-616 and 620-642" FT misc_feature complement(1165137..1166513) FT /note="HMMPfam hit to PF00115, Cytochrome C and Quinol FT oxidase polypeptide I, score 1.5e-245" FT misc_feature complement(1165650..1165814) FT /note="PS00077 Heme-copper oxidase catalytic subunit, FT copper B binding region signature." FT CDS complement(1166736..1167701) FT /transl_table=11 FT /locus_tag="BPP1094" FT /product="putative ubiquinol oxidase subunit II" FT /note="ortholog of Bordetella pertussis (BX470248) BP2731" FT /protein_id="CAE36395.1" FT /translation="MPLFQRLRGLTMLGVLPLLAGCNAVLLSPSGDIALQQRNLIIIST FT GLMLLIIVPVIALTLLFAWRYRAGNTEARYEPDWNHSTVLELLIWSAPLLIIIALGALT FT WVSTHQLDPYRPLARIADGRDVPPGTKPLVVQVAALDWKWLFVYPEQGIATVNEMAAPV FT DRPIQFQITSSSVMNSFFVPALAGQIYAMPGMQTTLHAVINHPGEYEGLSANYSGGGFS FT GMRFRFHGLDQAGFDQWIARVRQAGGALDASAYQALAQPSEREPVRHYASVAPDLFQRI FT VGRCVEPGRACMDHGKPSPAKALATQLAGQICRGEQDLVL" FT misc_feature complement(join(1167384..1167449,1167510..1167575, FT 1167621..1167680)) FT /note="3 probable transmembrane helices predicted for FT BPP1094 by TMHMM2.0 at aa 7-27, 42-64 and 84-106" FT misc_feature complement(1167621..1167701) FT /note="Signal peptide predicted for BPP1094 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.908) with cleavage site FT probability 0.462 between residues 27 and 28" FT CDS 1167938..1169275 FT /transl_table=11 FT /locus_tag="BPP1095" FT /product="putative membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2732" FT /protein_id="CAE36396.1" FT /translation="MSTTTQHPGYAPATPHPGSSGGASHSHVAPGEIAVGVVIGRASEY FT FDFFVFGIACVLVFPSVFFPFESELDGMLWAFVIFSFAFIARPFGTALSMAVQRRWGRG FT AKLTAALFLLGTATCGMAFLPGYDAIGMYAILLLSLFRCLQGLALGGSWDGLPSLLALN FT APAGRRGWYAMLGQLGAPIGFMIASALFLFLFLISTLARDDFLDWGWRYPFFVAFAINV FT VALFARLRLVVTEEYTQLMEEGELEPIRTTEMLREQGYNMLIGAFAALASYALFHLVTV FT FPLSWIAAGASQMSGDVLVVQIAGAALAIVCTLASGWLADRIGRRTTLGLMALLIGVFA FT LFTPWLLGGGPLAQDAFILIGFALLGLSYGQASGTVTANFIRRFRYTGAAFTADMAWLL FT GAAFAPLVALGLSARFGLVAVSVYLLSGVACTLLALRVNRLLETRD" FT misc_feature 1168034..1169260 FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 8.4e-07" FT misc_feature join(1168079..1168132,1168160..1168228,1168265..1168333, FT 1168376..1168435,1168469..1168537,1168565..1168633, FT 1168733..1168801,1168829..1168897,1168916..1168984, FT 1169012..1169080,1169099..1169167,1169180..1169248) FT /note="12 probable transmembrane helices predicted for FT BPP1095 by TMHMM2.0 at aa 48-65, 75-97, 110-132, 147-166, FT 178-200, 210-232, 266-288, 298-320, 327-349, 359-381, FT 388-410 and 415-437" FT misc_feature 1168883..1168936 FT /note="PS00216 Sugar transport proteins signature 1." FT CDS 1169383..1169784 FT /transl_table=11 FT /locus_tag="BPP1096" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4111 SWALL:Q9HWR9 (EMBL:AE004827) (132 aa) fasta FT scores: E(): 6.5e-29, 62.4% id in 133 aa" FT /protein_id="CAE36397.1" FT /translation="MNAPPILRQPCPPGACVCERERLQADPQGDLRILKLTREEEKRLT FT SRLENLASLDDLRAMQGRMYALLGLVVRIVPSARGVRTVRGIAIELDAQPGLCRKTRAA FT IPAAIRRGFERNPEIVYALLNERDLLSGA" FT CDS complement(1169797..1170783) FT /transl_table=11 FT /locus_tag="BPP1097" FT /product="putative amino-acid dehydratase" FT /EC_number="4.2.-.-" FT /note="Similar to Ralstonia solanacearum probable FT amino-acid dehydratase protein Rsp1516 or Rs04793 FT SWALL:Q8XPX0 (EMBL:AL646085) (323 aa) fasta scores: E(): FT 3.9e-34, 37.74% id in 310 aa, and to Streptomyces FT coelicolor putative threonine dehydratase Sc5f8.02C FT SWALL:Q9K4M2 (EMBL:AL357613) (319 aa) fasta scores: E(): FT 2.1e-33, 40.43% id in 319 aa" FT /protein_id="CAE36398.1" FT /translation="MLDVTSDTSAVPDSSAIAYLHAQLQRWVRATPILEKTDFEPVAGI FT AVCFKFELLQASGTFKARGAFSHLLALDDAQRQAGATCVSAGNHAVAVAYAAMRLGLSA FT KVVMIKTASPARVALCRQYGAEVVLADDGPQAFETVRRIENEEGRYFVHPFNGYRTVLG FT TATLGHEWLQQAGELDAVIVPVGGGGLISGVATAIKLAAPQCQVIGVEPEGADAMHRSF FT AAGGPIRMGPMHSIADSLMAPHTEQYTYDLCRRHVDRLVKVDDHALRAAMRLLFDQLKL FT ATEPACAAATAALAGPLRNDLAGRRVGVLLCGTNTDPATFARHLGAD" FT misc_feature complement(1169842..1170714) FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme, score 1e-58" FT CDS complement(1170914..1171780) FT /transl_table=11 FT /locus_tag="BPP1098" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1360 SWALL:Q9I3Y4 (EMBL:AE004565) (297 aa) fasta FT scores: E(): 1.4e-67, 68.68% id in 281 aa, and to Yersinia FT pestis putative membrane protein Ypo2507 SWALL:Q8ZDP9 FT (EMBL:AJ414152) (295 aa) fasta scores: E(): 3.2e-61, 60.85% FT id in 281 aa" FT /protein_id="CAE36399.1" FT /translation="MNRPTPRAGSALLPIVLLLVAMASLQSGASLAKTLFPAVGAQGTA FT ALRLGFSALILLPLLRPWRLRLDAAGWRVVVLYGLALGGMNLLFYLSLRTIPLGIAVAL FT EFTGPLAVAVLASRRWHDFAWIGLAAGGLLLLIPHGAAAGPLDPTGVACALAAGACWAL FT YIVFGQRAGLRHGTRTVALAATVAAAAVLPFGLAHAGAALFSPAIIPLGLAVAILSSAL FT PYALEMQVLTRLPARTFGTLLSLEPVFGALSGLLFLGETLNATQWLAVAAIVAASAGIT FT VTGRRRG" FT misc_feature complement(join(1170929..1170994,1171007..1171063, FT 1171103..1171159,1171175..1171240,1171280..1171336, FT 1171352..1171408,1171430..1171495,1171508..1171573, FT 1171601..1171666,1171697..1171753)) FT /note="10 probable transmembrane helices predicted for FT BPP1098 by TMHMM2.0 at aa 9-28, 38-60, 69-91, 95-117, FT 124-143, 148-167, 180-202, 207-226, 239-258 and 262-284" FT misc_feature complement(1170935..1171306) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 5.6e-18" FT misc_feature complement(1171685..1171780) FT /note="Signal peptide predicted for BPP1098 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.915 between residues 32 and 33" FT CDS complement(1171829..1172254) FT /transl_table=11 FT /locus_tag="BPP1099" FT /product="putative universal stress protein" FT /note="Similar to Methanococcus jannaschii hypothetical FT protein Mj0531 SWALL:Y531_METJA (SWALL:Q57951) (170 aa) FT fasta scores: E(): 3e-06, 31.2% id in 141 aa, and to FT Methanosarcina acetivorans StrC2A universal stress protein FT Ma3286 SWALL:AAM06656 (EMBL:AE011032) (150 aa) fasta FT scores: E(): 1.5e-05, 30.49% id in 141 aa" FT /protein_id="CAE36400.1" FT /translation="MKQVLVPVDGSEHALAAVRAVLNAQLYPSLERVHLATAQVPLYPQ FT GVHMGLSQTEIDAYYREESEFALAGAQKLLEAAGVPYETHSELGQVAETLVDLAKRLDV FT DEIVMGSRGLGSISSVMLGSVATKVLHLAETPVTLVK" FT misc_feature complement(1171835..1172257) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00582, Universal stress protein FT family, score 5.8e-06" FT CDS 1172433..1173005 FT /transl_table=11 FT /locus_tag="BPP1100" FT /product="putative chromate transporter" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein Rsc0979 or rs04313 SWALL:Q8Y0R4 FT (EMBL:AL646062) (193 aa) fasta scores: E(): 1.7e-28, 45.21% FT id in 188 aa" FT /protein_id="CAE36401.1" FT /translation="MTAVPTDSDASFLATPPSCGALFNGFFWLGVTAFGGALPLARSMM FT VERRRWLSPDEFTDLLGLCQFLPGGNIINMSVAVGMKFRGPRGAIAALLGLILAPSIIV FT ILLGMVYQRYEQDPRVEHLFTGLAAAAAGLLVSMALKIARPLRGKWAGIAVAAACFVAI FT ALLRLPLLPTMLVLTPLSIALTWRLRR" FT misc_feature 1172481..1172990 FT /note="HMMPfam hit to PF02417, Chromate transporter, score FT 5.9e-21" FT misc_feature join(1172490..1172558,1172697..1172765,1172793..1172861, FT 1172880..1172945) FT /note="4 probable transmembrane helices predicted for FT BPP1100 by TMHMM2.0 at aa 20-42, 89-111, 121-143 and FT 150-171" FT CDS 1173002..1173523 FT /transl_table=11 FT /locus_tag="BPP1101" FT /product="putative chromate transporter" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein Rsc0980 or Rs04384 SWALL:Q8Y0R3 FT (EMBL:AL646062) (181 aa) fasta scores: E(): 5.4e-20, 39.39% FT id in 165 aa, and to Bacillus subtilis hypothetical protein FT YwrA SWALL:O05215 (EMBL:Z93767) (178 aa) fasta scores: E(): FT 5.4e-11, 28.9% id in 173 aa" FT /protein_id="CAE36402.1" FT /translation="MTDILLSLAGIFAQLSLLAFGGGNTILPEMQRQVGDVHHWMTAAD FT FSALFALGQAAPGPNLMVVTLVGWHVAGWQGVLVTTLAKFGPSSVVTVVALGLWERFKD FT QPWRAVVQAGIFPMTVGLMAASAALISHASVHGWLTAAIVAGVAAVATLTRVHPLWLLA FT AGALVGFVAL" FT misc_feature 1173002..1173064 FT /note="Signal peptide predicted for BPP1101 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.943) with cleavage site FT probability 0.835 between residues 21 and 22" FT misc_feature 1173008..1173517 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02417, Chromate transporter, score FT 1.6e-06" FT misc_feature join(1173014..1173082,1173140..1173208,1173227..1173295, FT 1173323..1173391,1173410..1173478) FT /note="5 probable transmembrane helices predicted for FT BPP1101 by TMHMM2.0 at aa 5-27, 47-69, 76-98, 108-130 and FT 137-159" FT misc_feature 1173053..1173097 FT /note="PS01036 Heat shock hsp70 proteins family signature FT 3." FT CDS complement(1173543..1174661) FT /transl_table=11 FT /locus_tag="BPP1102" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc3159 or Rs00439 SWALL:Q8XUM8 (EMBL:AL646074) FT (376 aa) fasta scores: E(): 1.7e-97, 68.08% id in 376 aa, FT and to Neisseria meningitidis hypothetical protein Nma1400 FT SWALL:Q9JUB9 (EMBL:AL162755) (331 aa) fasta scores: E(): FT 4.6e-58, 50.3% id in 328 aa" FT /protein_id="CAE36403.1" FT /translation="MNDLPTVQWAENGATRHALWRSESGAPAPRRIVAADDTLKADAAW FT RLACEGTAILWRGDFHNARQLLQAMGRRFDKRPAKPAASALEAFNQHRMRQGQRARTLG FT MLLLPVEPGHHVALRRAPDVGQACLKAYGPAAEPYLVSLRELLGLIGAAQWQQKGVPIA FT ALGARTHPRYGVFSPVRGEYVDLVANTPLPGGATAFDIGTGTGVLAAVLARRGLDVTAT FT DLDPRALACAADNLQRLGLGGRVRLLQADLFPPGRADLVVCNPPWLPARPSAPVEYAIY FT DPDSRMLTGFLAGLAAHLNPGGEGWLILSDLAEHLGLRSRDWLLAQVEQAGLRVAGRVD FT TRPVHPRASDPADPLHAARAAEVTSLWRLAAR" FT misc_feature complement(1173861..1173881) FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT CDS complement(1174797..1175045) FT /transl_table=11 FT /gene="fdsD" FT /locus_tag="BPP1103" FT /product="putative NAD-dependent formate dehydrogenase FT delta subunit" FT /EC_number="1.2.1.2" FT /note="Similar to Alcaligenes eutrophus NAD-dependent FT formate dehydrogenase delta subunit FdsD SWALL:O87817 FT (EMBL:AJ223295) (127 aa) fasta scores: E(): 7.9e-10, 54.68% FT id in 64 aa, and to Rhizobium meliloti NAD-dependent FT formate dehydrogenase delta subunit FdsD or R03007 or FT Smc03086 SWALL:Q9EZD5 (EMBL:AF298190) (77 aa) fasta scores: FT E(): 8.1e-06, 44.28% id in 70 aa" FT /protein_id="CAE36404.1" FT /translation="MEIGNLIRMANRIGDFFDAYPDRAEAQANIATHIQKFWEPRMRTQ FT LLAFVAQHPDGDDGQARLNGIVLHAVRDARARLTPKA" FT CDS complement(1175057..1175887) FT /transl_table=11 FT /gene="fdhD" FT /gene_synonym="fdsC" FT /locus_tag="BPP1104" FT /product="formate dehydrogenase associated protein" FT /note="Similar to Alcaligenes eutrophus FdhD protein or FT FdsC SWALL:FDHD_ALCEU (SWALL:O87816) (288 aa) fasta scores: FT E(): 4.9e-49, 55.26% id in 266 aa, and to Ralstonia FT solanacearum probable formate dehydrogenase associated FT protein fdhd or rsp1050 or rs02387 SWALL:Q8XR18 FT (EMBL:AL646082) (273 aa) fasta scores: E(): 5e-41, 48.36% FT id in 275 aa" FT /protein_id="CAE36405.1" FT /translation="MDRLHTSSADWPDHLATQVVRVRGGVLQAAGQSDHVAEETPVALE FT FNGISHATMLVTPTHLDDFALGFALTEGIVGGMADVRGVELETRCDGIVVQVEIATSCE FT VRLKERRRAMAGRTGCGLCGVETLPEVVRDVAPAADSDALPVHNVLRAMQSLRSRQTLH FT DATGATHAAGWADASGEVVLAREDVGRHNALDKLIGALARQGIAPLPGMAVVSSRASFE FT MVQKTASAGIPILAAVSAPTALAIRLARQTNVTLLGFVRNTDATIYSHPQRIAA" FT misc_feature complement(1175072..1175803) FT /note="HMMPfam hit to PF02634, FdhD/NarQ family, score FT 1.3e-78" FT CDS complement(1175903..1178779) FT /transl_table=11 FT /gene="fdsA" FT /locus_tag="BPP1105" FT /product="NAD-dependent formate dehydrogenase alpha FT subunit" FT /EC_number="1.2.1.2" FT /note="Similar to Alcaligenes eutrophus NAD-dependent FT formate dehydrogenase alpha subunit FdsA SWALL:O87815 FT (EMBL:AJ223295) (959 aa) fasta scores: E(): 0, 75.94% id in FT 952 aa, and to Rhizobium meliloti probable NAD-dependent FT formate dehydrogenase alpha subunit protein FdsA or R03009 FT or Smc04444 SWALL:Q92LN1 (EMBL:AL591792) (959 aa) fasta FT scores: E(): 0, 73.09% id in 944 aa" FT /protein_id="CAE36406.1" FT /translation="MLETVIKRDRDLGTPARESAQLVTLTIDGQPVSVPAGTSVMRAAA FT EAGINIPKLCATDSLEPFGSCRLCLVQIEGRRGYPASCTTPVEAGMVVQTENARLRDLR FT RGVMELYISDHPLDCLTCPANGDCELQDMAGVVGLREVRYGYDGENHLAEAKDESNPYF FT TYDPSKCIVCNRCVRACEETQGTFALTISGKGFASRVSPGQDQPFMDSECVSCGACVQA FT CPTSTLQEKSIIMLGQAEHSVITTCAYCGVGCGFKAEMKGEEVVRMVPWKDGQANRGHS FT CVKGRFAWGYTTHKERVLKPMIRQRITDPWREVSWEEAIGHAASEFRRIQAAHGRDAIG FT GITSSRCTNEETWLVQKLVRAAFGTNNVDTCARVCHSPTGYGLKQTLGESAGTQTFDSV FT MHTDVVIVMGANPSSAHPVFASRLKRRLREGALLIVIDPRRIELVSAPHVKADFHLQVR FT PGTNVALLTAMAHVIVTEGLVAESFVAERCEAPSFDMWREFVARAENSPEAMQEVTGVP FT AQLVRGAARLYATGGNGSIYYGLGVTEHSQGSTTVMAIANLAMATGNIGREGVGVNPLR FT GQNNVQGSCDMGSFPHELPGYRHISDDAVRGEFERDWGVTLQPEPGLRIPNMFEAALGG FT SFLGLYCQGEDIVQSDPNTQHVAAALSAMECIVVQDLFLNETAKYAHVFLPGSSFLEKD FT GTFTNAERRISRVRKVMRPRNGMADWEITMALSNALDYPMHYAHPSEIMDEIARLTPTF FT AGVTYEKLDRLGSIQWPCNEDAPEGTPTMHIDEFVRGRGRFMLTKYVATDERSTRRYPL FT LLTTGRILSQYNVGAQTRRTPNVMWHGEDVLEIHPHDAQERGVADGDWVGIQSRAGETV FT LRATLTDRVQPGVVYTTFHFPESGANVVTTDNSDWATNCPEYKVTAVQVTRVSQPSEWQ FT RQWSRFADVQQKLLHERARETEPALANK" FT misc_feature complement(1176029..1176346) FT /note="HMMPfam hit to PF01568, Molydopterin dinucleotide FT binding domain, score 1.9e-28" FT misc_feature complement(1176359..1178062) FT /note="HMMPfam hit to PF00384, Molybdopterin FT oxidoreductase, score 5.7e-131" FT misc_feature complement(1177991..1178047) FT /note="PS00551 Prokaryotic molybdopterin oxidoreductases FT signature 1." FT misc_feature complement(1178093..1178164) FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain, score FT 0.00036" FT misc_feature complement(1178108..1178143) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature complement(1178222..1178293) FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain, score FT 0.043" FT misc_feature complement(1178237..1178272) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature complement(1178513..1178707) FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain, score 1.8e-10" FT CDS complement(join(1178797..1179135,1179135..1180367)) FT /pseudo FT /transl_table=11 FT /gene="fdsB" FT /locus_tag="BPP1106" FT /product="NAD-dependent formate dehydrogenase beta subunit FT (pseudogene)" FT /EC_number="1.2.1.2" FT /note="Pseudogene. This CDS contains an a frameshift FT following codon 411. Similar to Alcaligenes eutrophus FT NAD-dependent formate dehydrogenase beta subunit FdsB FT SWALL:O87814 (EMBL:AJ223295) (520 aa) fasta scores: E(): FT 2.4e-144, 72.58% id in 518 aa, and to Rhizobium meliloti FT putative NAD-dependent formate dehydrogenase beta subunit FT protein FdsB or r03010 or Smc02525 SWALL:Q92LN0 FT (EMBL:AL591792) (518 aa) fasta scores: E(): 7.4e-135, FT 67.18% id in 518 aa" FT /db_xref="PSEUDO:CAE36407.1" FT misc_feature complement(1179195..1179977) FT /note="HMMPfam hit to PF01512, Respiratory-chain NADH FT dehydrogenase 51 Kd subunit, score 5.4e-116" FT misc_feature complement(1179513..1179560) FT /note="PS00644 Respiratory-chain NADH dehydrogenase 51 Kd FT subunit signature 1." FT CDS complement(1180364..1180855) FT /transl_table=11 FT /gene="fdsG" FT /locus_tag="BPP1107" FT /product="NAD-dependent formate dehydrogenase gamma FT subunit" FT /EC_number="1.2.1.2" FT /note="Similar to Alcaligenes eutrophus NAD-dependent FT formate dehydrogenase gamma subunit FdsG SWALL:O87813 FT (EMBL:AJ223295) (176 aa) fasta scores: E(): 1.8e-32, 57.41% FT id in 155 aa, and to Agrobacterium tumefaciens NADH FT dehydrogenase I chain E NuoE or Atu4706 or Agr_l_350 FT SWALL:AAL45500 (EMBL:AE009399) (159 aa) fasta scores: E(): FT 2.4e-31, 57.61% id in 151 aa" FT /protein_id="CAE36408.1" FT /translation="MENAEHSASPAIATTARLLAAMKDQPGALLPVLHAVQDELGFIPP FT EAVQTIAETLSLSRAEVHGVITFYPHFRSEPAGRHVLEICRAESCQAMGGDALAAHARQ FT RLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQPHARVTPAKLDRLLARAIEATP FT " FT misc_feature complement(1180379..1180819) FT /note="HMMPfam hit to PF01257, Respiratory-chain NADH FT dehydrogenase 24 Kd subunit, score 1.1e-25" FT CDS 1181110..1182177 FT /transl_table=11 FT /locus_tag="BPP1108" FT /product="putative molybdenum-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2705" FT /protein_id="CAE36409.1" FT /translation="MLEGGEGAAGQPLQDMLALLAAIDDSGNIAGACKTCGLSYRHAWG FT VLRRFEALFGTPLLVTRRRLGTALSPFAQRLLWANRRIDARLMPTLESLASELQEELER FT LLPESGPHLRLHASHGFAVEALMQHLDTRLPGVELHYRTAAEALASLRGNDCDLAGFQV FT PQGEFEAPILRLYAQWLDPNEHLLIHLAMRNTGLFVVAGNPKGIGGVADLARADVRFVN FT RQAGSSTYYLVNLMLQRAGVAPAAVQGYQNNEFTHMAVAAHIASGMADTGIGVETAARR FT FGLDFIPLVRERYFFAIRKTALESAAMRALLEGMRSPEYRGFVGQLPGYDASDTGAIQT FT LEQAFARDFRPRAAL" FT misc_feature 1181116..1181400 FT /note="HMMPfam hit to PF02573, N-terminal HTH domain of FT molybdenum-binding protein, score 1.8e-05" FT CDS 1182188..1183285 FT /transl_table=11 FT /gene="moaA" FT /locus_tag="BPP1109" FT /product="molybdenum cofactor biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2706" FT /protein_id="CAE36410.1" FT /translation="MSKVIFLTDRRQADLAAPSADLPPAGEPARDVRARPLRDLRISVT FT DRCNFRCTYCMPREVFDSSYAFMPHSALLSFEEIARLAAQFARLGVEKIRLTGGEPLLR FT KNIETLVGMLAELRTPAGRPLDLTLTTNGSLLARKAAALKQAGLSRVTVSLDALDAALF FT ARMSDSNFSPDDVLRGIDAAAEAGLAPVKVNMVVRRGLNDGEILSMARRFRGSGHILRF FT IEYMDVGSTNGWNLSEVVPSDEVLARIAEHHPLVPLDTPVMGRVAERWRYDDGGGEIGV FT ISSVTHAFCSGCTRARLSPEGRLFLCLFASHGHDLRAPLREGADDDSLARILTGIWGQR FT DDNYSERRGQGGGAADRIEMSYIGG" FT misc_feature 1182317..1182352 FT /note="PS01305 moaA / nifB / pqqE family signature." FT misc_feature 1182437..1183099 FT /note="HMMPfam hit to PF01444, moaA / nifB / pqqE family, FT score 1.9e-60" FT CDS complement(1183427..1184632) FT /transl_table=11 FT /gene="moeA" FT /locus_tag="BPP1110" FT /product="molybdopterin cofactor biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2707" FT /protein_id="CAE36411.1" FT /translation="MLEFDQAQQLLAQAGAPVAGTEHVALEQADGRVLATDLAATVDLP FT PADNSAMDGYAIRLADYQAGARMPVQQRAYAGDMPQALIPGQATRLFTGSLIPAGADTV FT VMQEDAREADGQVEITQAPTLGQWIRKRGDGTTAGRPLLDAGTLLHAGHVGLLGTQGLA FT SVPVRARLRIGVLTTGDELVAPGQPRAAQQIYNSNGPMLAALVRGMGAQVSHVLHARDD FT EDALRAALRTLLADSDLVLSSGGVSVGERDLVKPVLEALGGELGLWKVRMKPGKPVALA FT HIDGKPVVCLPGNPVSSYAVFALLVSPLVRRMQGRAELYPAVSRLPLRTERPRQDSREE FT FLRVQWRATEDGAGELQPFGNQDSAIITSVPWSTGLARLPAGVPVNDGERVGYYDLRHW FT LT" FT misc_feature complement(1183442..1183660) FT /note="HMMPfam hit to PF03454, MoeA C-terminal region FT (domain IV), score 5.3e-09" FT misc_feature complement(1183709..1184125) FT /note="HMMPfam hit to PF00994, Probable molybdopterin FT binding domain, score 1.5e-56" FT misc_feature complement(1183790..1183894) FT /note="PS01079 Molybdenum cofactor biosynthesis proteins FT signature 2." FT misc_feature complement(1184150..1184632) FT /note="HMMPfam hit to PF03453, MoeA N-terminal region FT (domain I and II), score 4e-50" FT CDS complement(1184639..1185160) FT /transl_table=11 FT /gene="moaB" FT /locus_tag="BPP1111" FT /product="molybdenum cofactor biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2708" FT /protein_id="CAE36412.1" FT /translation="MNDAKQVSLACAILTVSDSRSAGDDTSGNMLAESLAHAGHMCVRR FT DLVKKDLYQIRRVISEWIADPAVQVILVSGGTGFTPRDCTAQAIEPLFDKTIEGFGELF FT RQLSYEEIGSSAVQSSALAGTANDTVIFCMPGSNHACKLGWNRIIREQLDDAHKPCNFA FT MHYRAKPDAD" FT misc_feature complement(1184708..1185139) FT /note="HMMPfam hit to PF00994, Probable molybdopterin FT binding domain, score 1.3e-43" FT misc_feature complement(1185095..1185160) FT /note="Signal peptide predicted for BPP1111 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.699) with cleavage site FT probability 0.357 between residues 22 and 23" FT CDS complement(1185157..1185648) FT /transl_table=11 FT /gene="moaE" FT /locus_tag="BPP1112" FT /product="molybdopterin converting factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2709" FT /protein_id="CAE36413.1" FT /translation="MNIMVIVQEADFDGAALLAALRERVGGQAGAIVTFVGYVRDFAPE FT QATETLYLDHYPGMCERELETIAATARERWDLAGTVIAHRVGALPRGAQIVFVAAASAH FT RGDAFRGCEYIIDALKTRAPFWKRETLAAGDSFWVEQRQSDADRTQSWEDPDTPTKEHP FT " FT misc_feature complement(1185280..1185645) FT /note="HMMPfam hit to PF02391, MoaE protein, score 3.6e-32" FT CDS complement(1185645..1185896) FT /transl_table=11 FT /gene="moaD" FT /locus_tag="BPP1113" FT /product="molybdopterin converting factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2710" FT /protein_id="CAE36414.1" FT /translation="MSGATIKVLYFARVAELVGKRTEDWPLAETVTGAQLLAALAARYP FT QLEPAERLKLAVNQTHVKVGAAVRPGDEVAIFEPVTGG" FT misc_feature complement(1185651..1185833) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02597, ThiS family, score 3e-08" FT CDS complement(1185877..1186362) FT /transl_table=11 FT /gene="moaC" FT /locus_tag="BPP1114" FT /product="molybdenum cofactor biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2711" FT /protein_id="CAE36415.1" FT /translation="MSTTPTLSHLDESGQIRMVDVGHKTDTDRVAIARGSVRMNATAYG FT LLTQPGQGKGEVLNTARVAAVLAAKRCAELIPLCHSLPLAFVGIDFELDEAAYSVHIRA FT TCRTQYKTGVEMEAMTACSVAALTIYDMCKAADKGIVIEQIRLQYKAGGKSGEWRND" FT misc_feature complement(1185904..1186311) FT /note="HMMPfam hit to PF01967, MoaC family, score 1.3e-73" FT CDS 1186498..1189941 FT /transl_table=11 FT /locus_tag="BPP1115" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2712" FT /protein_id="CAE36416.1" FT /translation="MPVRMPGVRLTRRTVKVLLATVLVVLLLAGLAAWQVPRIVRGALT FT QDVSAMLGRDVSVGKIRFNPFTLTLRAHDLALAQPEGAAPLLQVAELDVSASWMSLFWF FT APVVDSLVVRQPRIALVREDVTRFNFSDIQQKVADMAAQSPPEPEPEAGPPRFSLNNMV FT LEGGEITLDDKVSGRQQRIDEIALGVPFISTFGYATDIDVQPRVHMRINGSPFDLTGVA FT RSFDTVPSSTLDVSFAGLELEKWADAWPLPLPVKLERALLDSDLQVLFEQPKDAAPRIK FT VVGELGLRQLDVRESSGDVLAQWSALAVRRIAFEPMQRSLYVGEVELWSPQIQTRRYAD FT QRLNWLDIAQKLQKLGAGDASAKPAAAPAPTPAPAPAQASASATPAAAQAAAAPQASAA FT AAAPDAWHVVVDAINVRDAELHLRDAVTKLDYVMNGVGATVEGLELPQPPDRPIGLWLT FT MDSTIDGSWLRAKGPLTLEPLNLDVKVELDRLALARLAPAVRASAPILVEDGRLGAQAR FT VRVAQRDGATQVVAEGAALRLSDLSLRDESVKPAVPVSVKQFEARFDRLAPDAQPPPFT FT LKADGVQGEGALAMQGSLTAQPLALKSSVDLARLDLAPFAPYIASSLNATVRAINLSAR FT GDAEFAAAAGATPMKAAWRGALDVNDLDLADRVNRDDFMQWKRLGLAGMQVSVNGDAFA FT ANLGDITLDDFYGRVLLNAEGRLNVMDLVAEPGQAGGSITQDTQTRARAAAPAKPGPMP FT DIAIGSVTLKGGKMTFTDRFVKPNYTAELSRIEGSVSAVSSRQPKPAKVNVAGRVYTSA FT PFSISGTVQPFAQFLSLDLKASAKGVDLPRFTTYSAKYVGYPIKRGKLSLDVQYQIKDR FT ALQASNRVVLNQLTFGDKTDSPDAVKLPVLLAVALLKDSRGNIDINLPISGSLDDPQFS FT VGGIIVRVLVNLVVKAVTSPFTLLASAFGGGEELSYIEFDPGSAALTPEAESRIETLAK FT ALNDRPGLKLDVAGRADPASDEEGLRQAWVERQIRLAKARDTAGRGKKPAPDGVEVAPA FT ERAKYLEEVYDDTKIEGKPRNFIGMAKSIPAEQMEALLRGAAPLGADDLRKLADARAQA FT VYEKLQAEGPADRIFVVAPQLDADGIKDDGKPTRVDFSLK" FT misc_feature 1186498..1186593 FT /note="Signal peptide predicted for BPP1115 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.525 between residues 32 and 33" FT CDS 1189938..1190843 FT /transl_table=11 FT /locus_tag="BPP1116" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2713" FT /protein_id="CAE36417.1" FT /translation="MTHRRFPMTDADPHFDSLLPPLTLTRRGFVVTSLAAGFSLAAGAA FT AAQSAIHTDAAGLTAGKVDIPTPDGKMPAYRAAPAGKKDLPTLLVVSEIFGVHEYIQDV FT CRRLARLGYQAVAPELFARYGDPTGYTDIGRLRAEVVDKAGDRQVLADLDAAAAWAAAN FT GGNSSRLGILGFCWGGRIVWLYAAHNPGLKAGAAWYGQLGGQASELKPRSVLESIGDLK FT APVLGAYGGKDAGIPLSDVDRMRLALAKGPRAARDSRIDVYPEAPHAFHADYRPSYRKA FT EAEQAWQRMLDWFGQHGLAA" FT misc_feature 1189938..1190078 FT /note="Signal peptide predicted for BPP1116 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.936) with cleavage site FT probability 0.596 between residues 47 and 48" FT misc_feature 1190151..1190831 FT /note="HMMPfam hit to PF01738, Dienelactone hydrolase FT family, score 2.2e-70" FT CDS complement(1190853..1191284) FT /transl_table=11 FT /locus_tag="BPP1117" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2714" FT /protein_id="CAE36418.1" FT /translation="MTRHFLAALLLAAASGAACAQAGADPAGQAIFDQIVLTSGAANGA FT ARTCGASAPDLAQHAETWRLNLRRYADEYHYAFDSFDERYARGQQEGTEMMADMRASGV FT DGCTGALASFQRERTMTYDEMKQAIAEATDGLPEDQPAD" FT misc_feature complement(1191225..1191284) FT /note="Signal peptide predicted for BPP1117 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.431 between residues 20 and 21" FT misc_feature complement(1191228..1191260) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1191475..1192026 FT /transl_table=11 FT /locus_tag="BPP1118" FT /product="AhpC/TSA-family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2715" FT /protein_id="CAE36419.1" FT /translation="MPRPFGRTSPEKPESLMTIKVGDRVPDGTLTEFIETETAGCTLGP FT NAFQVADLVKGKKIALFAVPGAFTPTCSAKHLPGYVEQAAALRAKGIDEIWCVAVNDAF FT VMGAWGREQQAGGKVRMLADGSALWTTALGLELDLVQRGMGVRSQRYSALIDDGVVKQL FT NIEAPGKFEVSDAATMLAQA" FT misc_feature 1191535..1192017 FT /note="HMMPfam hit to PF00578, AhpC/TSA family, score FT 1.7e-06" FT CDS 1192038..1193504 FT /transl_table=11 FT /locus_tag="BPP1119" FT /product="putative membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2716" FT /protein_id="CAE36420.1" FT /translation="MLYAAGHRGPRPVLPQADIRVPMLTTISSFSSLYFATLLMLIGTG FT LFNTYMGLRLTAQSVNEIWIGALIAGYYLGLVCGARLGHRLIIRVGHIRAFVACAAVAT FT SMILAQALVDHLPLWLLLRLISGIVMVTEFMVIESWLNEQTENHQRGRVFSVYMVVSGL FT GTVLGQLALTAYATLDDGPLTLVAMCLVLCLVPIAVTARSHPPTPLPAPLDLRFFASRV FT PLSLTVLFVAGNLSGAFYGLAAVYAAKHGLSTSQSAIFVAAAVTAGLLSQWPMGWLSDR FT INRAGLIRFNAAVLVLLPVLMWGWIVLPYWAMVALSCVFGVLQFTLYPLGAAFANDHVE FT PERRVGLSAILLMTYGVGACLGPLIAGVMMSLGGPGMYYVFISACAVILVWQVRPARVT FT GAHQVDEAPVHFVPMPDTLQSSPAAVALDPRVDPDVDITMEMADPGPDVVEPPAPAGPP FT APGADSESTSAPQAGEQAAPDDAAARRTGT" FT misc_feature join(1192098..1192166,1192224..1192286,1192305..1192364, FT 1192392..1192460,1192497..1192565,1192578..1192646, FT 1192707..1192775,1192803..1192871,1192890..1192958, FT 1192968..1193036,1193070..1193138,1193148..1193216) FT /note="12 probable transmembrane helices predicted for FT BPP1119 by TMHMM2.0 at aa 21-43, 63-83, 90-109, 119-141, FT 154-176, 181-203, 224-246, 256-278, 285-307, 311-333, FT 345-367 and 371-393" FT misc_feature 1192107..1193270 FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 0.0019" FT CDS complement(1193618..1194493) FT /transl_table=11 FT /locus_tag="BPP1120" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2717" FT /protein_id="CAE36421.1" FT /translation="MNQGLLYLAASVACSVTVAVLLKLARRHAIDVRQAIAVNYAVAAA FT LCWLLLRPDAQALRQAMQGAPVLAALAVLLPTVFVAMARSVHHAGIVKSDAAQRLSLFI FT PLLAAFALFGESLTARKLAAIALAFAALACLLRRRAPAGAAADDAPDDRRAAWMWPLAV FT WAGYGVIDILFKQLARSGTAFSAGLLATFVAAGLLTLAYLCIRRTRWQARHALAGVALG FT LANFGNILTYVRAHQSLPDHPALVFGAMNMGVITAGTLVGALAFRERLSALNLAGLALA FT LAAIAAMLPW" FT misc_feature complement(join(1193624..1193674,1193696..1193761, FT 1193792..1193857,1193879..1193944,1193975..1194025, FT 1194086..1194127,1194143..1194193,1194233..1194298, FT 1194338..1194388,1194428..1194478)) FT /note="10 probable transmembrane helices predicted for FT BPP1120 by TMHMM2.0 at aa 5-22, 35-52, 65-87, 100-117, FT 122-136, 156-173, 183-205, 212-234, 244-266 and 273-290" FT misc_feature complement(1194437..1194493) FT /note="Signal peptide predicted for BPP1120 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.931) with cleavage site FT probability 0.709 between residues 19 and 20" FT CDS complement(1194490..1195497) FT /transl_table=11 FT /locus_tag="BPP1121" FT /product="biotin synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2718" FT /protein_id="CAE36422.1" FT /translation="MHTAYIPVPTPVRPPSAERWPLAAVAELFELPFLDLLHRAQQVHR FT QHFDANTVQLSSLLSIKTGGCPEDCAYCPQSAHYDTGVDADKLMPLDEVVRAARAAQAN FT GAQRFCMGAAWRSPKPHHLEAVAEMIGAVKALGMETCVTLGMLRDGQAEQLKAAGLDYY FT NHNLDTAPEFYGKIISTRTYQDRLDTLQQVREAGINVCCGGIVGMGESRRDRAGLVAQL FT ANMEPYPESVPINNLVQVEGTPLAGAETLDPFEFIRTIAVARITMPLAKVRLSAGRETM FT SDSEQALCFMAGANSIFYGDVLLTTGNPQVEADRRLLQRLGMRAEGLPCAAGQA" FT misc_feature complement(1194526..1195446) FT /note="HMMPfam hit to PF01792, Biotin synthase, score FT 3.9e-184" FT CDS 1195966..1196271 FT /transl_table=11 FT /locus_tag="BPP1122" FT /product="putative exported protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc1398 SWALL:Q9A8F6 (EMBL:AE005814) (130 aa) fasta FT scores: E(): 4.2, 39.13% id in 69 aa. Also similar to FT BPP1123 (70% id), BPP4018 (49% id), BPP0099 (41% id), FT BPP0743 (40% id), BPP1997 (40% id)." FT /protein_id="CAE36423.1" FT /translation="MNRIATALILSASVFGVAQAGELDYPPAIESASALSHAQVQDELL FT AARAAGQMSSAELAYPPVVEQAATQVSRSQIRQELSAAKARGLDASGELDYPPVAG" FT misc_feature 1195966..1196025 FT /note="Signal peptide predicted for BPP1122 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 20 and 21" FT CDS 1196335..1196640 FT /transl_table=11 FT /locus_tag="BPP1123" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2719" FT /protein_id="CAE36424.1" FT /translation="MNRFATALILFASVFGVAQAGELDYPPAIESANTLSHAQVQAELQ FT AARTQGLMAAGEQDYPITAYAAASTVSREQVRDELAAARAQGLTESGELAYPPVAG" FT misc_feature 1196335..1196394 FT /note="Signal peptide predicted for BPP1123 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 20 and 21" FT CDS 1196764..1197354 FT /transl_table=11 FT /locus_tag="BPP1124" FT /product="putative TetR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2720" FT /protein_id="CAE36425.1" FT /translation="MDTPSTNTTRDQLLDYAQKLIRTRGCNGFSYRDLADHVGVKTSSV FT HYYFPCKDDLLYEAVENYTGSALETLRGISPTLPAKERLDAYIAMVESHSCQADQLCLG FT GMLAAELNTLPERVRAALQAFFTVEENWLAKVLADGAREGTLRYASTPEKAARALFATV FT QGCLLGARLFQRPPDLREALGALYVQCGASPAH" FT misc_feature 1196800..1196940 FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 3.5e-05" FT tRNA complement(1197715..1197791) FT /note="tRNA Asp anticodon GTC, Cove score 95.07" FT tRNA complement(1197827..1197902) FT /note="tRNA Glu anticodon TTC, Cove score 60.10" FT tRNA complement(1197934..1198009) FT /note="tRNA Ala anticodon GGC, Cove score 86.46" FT CDS complement(1198129..1199022) FT /transl_table=11 FT /locus_tag="BPP1125" FT /product="carboxyvinyl-carboxyphosphonate phosphorylmutase" FT /EC_number="2.7.8.23" FT /note="Similar to Streptomyces hygroscopicus FT carboxyvinyl-carboxyphosphonate phosphorylmutase BcpA FT SWALL:CPPM_STRHY (SWALL:P11435) (294 aa) fasta scores: E(): FT 2.4e-31, 35.73% id in 291 aa, and to Pyrobaculum aerophilum FT carboxyphosphonoenolpyruvate phosphonomutase Pae1716 FT SWALL:Q8ZWM5 (EMBL:AE009835) (308 aa) fasta scores: E(): FT 2e-32, 38.4% id in 289 aa" FT /protein_id="CAE36426.1" FT /translation="MSSAAKKFRDLLNSAEFIVSPGVYDGYSLRLVQAAGFKTACTSGA FT ALSNALLGIADIGVVGLMENVNHCRMLARSVDIPLTADADTGYGNPVNVFHTVQMFEEA FT GVAGVNLEGQVSPKRCGHMPGKDVIPLEEMVKKIEAACLARRDDNFVIIARTDALAVEG FT IEGAARRAQAYAAAGADVIFPDAVRTAEDIGRIVEAAGVPVSVNMGFGVRQRPTTPLIP FT LPELKRLGVKRISLPRMLPAAAIHGMRSALEEMKQVIATGTPAHRPDLLVGIEDIMELM FT GYEAMRALEKKLTTLD" FT misc_feature complement(1198654..1198671) FT /note="PS00161 Isocitrate lyase signature." FT CDS 1199222..1201906 FT /transl_table=11 FT /gene="acnA" FT /gene_synonym="acn" FT /locus_tag="BPP1126" FT /product="aconitate hydratase" FT /EC_number="4.2.1.3" FT /note="Similar to Escherichia coli aconitate hydratase 1 FT AcnA or Acn or B1276 SWALL:ACO1_ECOLI (SWALL:P25516) (890 FT aa) fasta scores: E(): 2.8e-149, 46.31% id in 881 aa, and FT to Listeria monocytogenes citb protein CitB or Lmo1641 FT SWALL:Q8Y6P3 (EMBL:AL591980) (900 aa) fasta scores: E(): FT 6.7e-163, 47.84% id in 903 aa" FT /protein_id="CAE36427.1" FT /translation="MLSGMTNRGYMNASFLHLGTPIHYADVAAAAARSGVELASLPYVI FT RILLENLLRHRGRGRPVQEAEIEAVAHWQAHISEQISLHVERVILPDSSGLPVLQDLAA FT LRDAVQAGGGDPARVDTRVPVDLIVDHSLQVDAWSTADAVRRNLDAEFARNEQRYRFLK FT WAQQAFDGLRVFAPGTGIIHQVNLEKLATVVSTSEHGGQQWACPDFVIGGDSHTPMVNG FT LGVLGWGVGGIDAESALLGRAYTFPIPEVVGVELKGAFRSPVTTTDAALLVTQRLRAEG FT VTGCMVEFFGEALPGLSVADRATIANMAPEYGATCGFFPVDAQTLDYLRLTGRTAEHIE FT LVRAYCQANGLWRADPAASAVRYARVVRIDLAQAEPCMSGPRRPQDRLPIGQLAEDFRQ FT RLPRPAAEGGFGPDAAALARAPGSAGLRHGSIVVAALTSCTNTSNPSVMLTAALVARAA FT RQRGIAPPAWVKRSLAPGSRTVTDYLAATGLLQDLEALGFGVIGYGCTTCGGKSGPLAP FT EVAQDIADNQWVVCTVLSDNRNFEGRIHKLARANYIGSPPLVVAYALAGRIDIDFSREP FT IATDADGQPVWLHELWPGEAQLDEIMARALSPQGFRRVWGLEPEGASQWRALAEVSGQH FT WQWDDSNYLVEPPFFKAPAQQFGQRLAGARVLGLYGDSLTTDHISPSGEIPAEAPAGRY FT LLGLGVAQRDFNTYVARRSNFEVMTRATFGNIRIRNLLVPGTEGGYTRHFPSGEQLSIY FT DASRRYMAAGTPTIVLAGEEYGTGSSRDWAAKGTALLGVRAVLAKSYERIHRANLVGMG FT VIPFQFERGQGWRELGLDGSETFEFFDVLDGIRQGRPVRVAASRDDGMRVEFSVMPQAL FT TESERELLLQGGIPASVLADYLQ" FT misc_feature 1199402..1200919 FT /note="HMMPfam hit to PF00330, Aconitase family (aconitate FT hydratase), score 2.5e-167" FT misc_feature 1200512..1200562 FT /note="PS00450 Aconitase family signature 1." FT misc_feature 1201292..1201813 FT /note="HMMPfam hit to PF00694, Aconitase C-terminal domain, FT score 4.1e-54" FT CDS 1201931..1203304 FT /transl_table=11 FT /locus_tag="BPP1127" FT /product="dihydroorotase-like protein" FT /EC_number="3.5.2.5" FT /note="Similar to Escherichia coli allantoinase AllB or FT GlxB3 or B0512 SWALL:ALN_ECOLI (SWALL:P77671) (453 aa) FT fasta scores: E(): 4.1e-36, 31.6% id in 443 aa, and to FT Arthrobacter aurescens L-hydantoinase HyuH hyuH FT SWALL:Q9F465 (EMBL:AF146701) (458 aa) fasta scores: E(): FT 9.7e-41, 32.59% id in 451 aa" FT /protein_id="CAE36428.1" FT /translation="MARPLDTLLANTLVFLEGQGLVPGSIGIADGRIAVIGSHGQDMPA FT ARETIDCQGLWTLPGVIDPHVHFGFGSPETDFETESRNAALGGTTSVISFHRSADIRES FT FDAVRARAESQSCIDFGFHFGITSRLHVDTLDEISRRFGVSSYKLYMMYKGAAGLSKGF FT TDIDDGLLWGALNATRAIPGAVLGVHCENVEVIPWLRDPLRAAGRDDLAAWNEQSPDFL FT EAENVHRVCYFAGKTGTPVNIVHLSSREALREVRRHRHEGRAAPIYVETCPHYLFLDDR FT SPAGTYAKVNPPVRSAADIDAMWEGVCDGAITTIGSDHVPRKRATKDKDIWAASNGFPG FT TGMILPILLHEGYHRRQVPLETLMRVASGASARIYGMPAKGRIAVGNDADLVIVDPDLE FT KTVDPGELESHADYSPYEGMRLKGWPVRTLVRGRTVARDGRIADEARQTPGGRYLRRL" FT misc_feature 1202072..1203235 FT /note="HMMPfam hit to PF00744, Dihydroorotase-like, score FT 1e-47" FT CDS 1203338..1204057 FT /transl_table=11 FT /locus_tag="BPP1128" FT /product="probable hydrolase" FT /note="Similar to Arthrobacter sp N-carbamoylsarcosine FT amidase SWALL:CSH_ARTSP (SWALL:P32400) (264 aa) fasta FT scores: E(): 4.8e-12, 32.32% id in 232 aa, and to FT Arthrobacter keyseri putative phthalate ester hydrolase FT PehA SWALL:Q9AGK9 (EMBL:AF331043) (218 aa) fasta scores: FT E(): 2.1e-15, 33.01% id in 212 aa" FT /protein_id="CAE36429.1" FT /translation="MSETKRIWDAFLTERDKEVYKAAGYGKRGGFGKRPALFIIDVQYN FT FCGDKPEDILEGLKQYRTHCGAEAWDAVKHIVPLLELAREKNLPVFYTESGRRNDLLDS FT GVQVGKNHRGGEKTVLANTHATRTVEELAPLPQDIRIVKQKPSCFFGTIFMSHLNFFDV FT DTLILVGCTTSGCLRATTVDAYSYNFKVIIPEEASFDRFQSSHAMSLFDLNCKYADVIP FT TAEVADYLKALPAREAG" FT misc_feature 1203434..1204021 FT /note="HMMPfam hit to PF00857, Isochorismatase family, FT score 3e-06" FT CDS 1204068..1205069 FT /transl_table=11 FT /locus_tag="BPP1129" FT /product="conserved hypothetical protein" FT /note="Similar to Salmonella typhimurium putative cobalamin FT synthesis protein YjiA or Stm4530 SWALL:Q8ZJY6 FT (EMBL:AE008913) (318 aa) fasta scores: E(): 7.8e-24, 33.23% FT id in 325 aa, and to Brucella melitensis CobW protein FT Bmei0036 SWALL:Q8YJP6 (EMBL:AE009447) (388 aa) fasta FT scores: E(): 1.2e-23, 35.5% id in 369 aa" FT /protein_id="CAE36430.1" FT /translation="MSTIPITLLTGFLGSGKTSLLRRLIHQPGFARCAVIINEFGEVGL FT DQALVADQSDDRDIQLLDSGCLCCLASSAIQDTLASLYYRRLRGEIPWFDRVLIETSGL FT AEPGPIINAVYGDGALARQFRFAGIVTTFDAGFGQVDVQAYAEAKTQLLMADTVVLTKL FT DLHPEARHLAAWLGELNPTARVYENSLPDDTLARLLLDPAADRPAPAAQGHPSAGAPQA FT SALRHLLAYGIHSVTVDVLDAIGWPAWAAFVHEVQRTFADRLLRLKGVLAFEGQGRMAV FT HAVHHVFSAPEPAGAVPPALVGKLVFIVRDMEREEVLHAVRHLSGAPPADAA" FT misc_feature 1204098..1204121 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1204170..1204994 FT /note="HMMPfam hit to PF02492, Cobalamin synthesis FT protein/P47K, score 2.3e-16" FT CDS 1205207..1206226 FT /transl_table=11 FT /locus_tag="BPP1130" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 2e-30, 35.38% id in 325 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 1.6e-39, 37.72% FT id in 326 aa" FT /protein_id="CAE36431.1" FT /translation="MNFFNFGFQPGAAHTRRRVTATVLALAAWAALPAQQAAAQPQWSQ FT RPVTLIVPFAPGGPTDITARVLGEALGKEWKQTVVIENRAGAGGTVGAGFAAKAAPDGY FT TLLLGVTGSHGIAGSLYPSLTYDPKGDFEAISKVVFYPNAIIANPDVPANNLQELIALA FT KKDPKYQVYGTDGNGTASHLTMELLRERGGFPMQAVQYKGASPLINDIVAGFVPVGITG FT FPSAEPQVKAGKLKLIALTTDKDYSGNGYPTIAGQGFPGFAAAPWSGIFAPKGTPAPVV FT QKIAADIKTVMASPAVVEKMQKLGLTPSAVTLADFEAELDRERASWATAVKISGAKVQ" FT misc_feature 1205207..1205323 FT /note="Signal peptide predicted for BPP1130 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.866 between residues 39 and 40" FT misc_feature 1205393..1206214 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.6e-64" FT CDS 1206245..1207630 FT /transl_table=11 FT /locus_tag="BPP1131" FT /product="putative fumarate reductase flavoprotein subunit" FT /EC_number="1.3.99.1" FT /note="Similar to Shewanella frigidimarina fumarate FT reductase flavoprotein subunit precursor IfcA FT SWALL:FRD2_SHEFR (SWALL:Q9Z4P0) (588 aa) fasta scores: E(): FT 4.3e-27, 29.13% id in 453 aa, and to Fusobacterium FT nucleatum subspnucleatum ATCC 25586 fumarate reductase FT flavoprotein subunit Fn0050 SWALL:AAL94263 (EMBL:AE010520) FT (558 aa) fasta scores: E(): 3.7e-30, 28.16% id in 458 aa" FT /protein_id="CAE36432.1" FT /translation="MEFDMEFDVVIVGAGGCGLTAAVAIHDAYPQASIAVLDKAERACG FT NTVLSSGSIPAAGTRFQEAAGVHDTPRMFQEDLLTIAGEHEAMDLTRALTETSARLVEW FT LVDSAHVRLTLVETYKHIGHRVHRLHSPPSRRGADLVDDLLRECERRDIPVAWSNAVTG FT LIASEGRPRGVECATPDGAVTRVGARHVVLASNGYAANKSLLARFVPEVAAAPYGGGTG FT SEGEAILWGESLGAGLANMKAYQGHASLADPHGSLVTWTVIEKGGIIVDRSGRRFGDES FT IGYSAFAALELARTGPFWVIADTQVRDVTAAGQEEYAELVAHGGVLEGCLEELCARTGI FT DAAGLAATLQAARQCAADGGADAHGRAQWGLGPLGERLTATRIGPAIFHTQGGLRVDID FT GRVLTDQAGVIDGLWAGGGAACGISGNRGSLGYMSGNGLLSALGLGLRIGQAIASRLGE FT EQA" FT CDS 1207627..1209003 FT /transl_table=11 FT /locus_tag="BPP1132" FT /product="putative exported protein" FT /note="Similar to Methanothermobacter thermautotrophicus FT conserved protein mth965 SWALL:O27046 (EMBL:AE000870) (452 FT aa) fasta scores: E(): 3.4e-26, 30.67% id in 427 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa0881 pa0881 FT SWALL:Q9I564 (EMBL:AE004522) (450 aa) fasta scores: E(): FT 1.1e-23, 29.59% id in 446 aa" FT /protein_id="CAE36433.1" FT /translation="MTHDFKGSLMAGATPTRALADWCAALRDSRPSEAVLRESARHALD FT TLAACAAGMRQPLVRAAIELERGINAQPGPVALFGGPERWTVLESAGLMAAACHALEMD FT DGNREGSIHPATTVVPAVLALGWQQEADYLAFLCAVVAGFEVAVSIAETLHPHASQRGF FT QTTPVAGVVGAAAACATLLGLDGAGIESAMGLAASASGGLFAYLAGGSNVKKFHPGHAA FT REGLRAALMARQGVAQGPRGVIEGRAGLLQAFGGITQWDGSRARERAAPAIARSYLKPY FT PCCRHIHPAIDAVMALKARAAWQAADVAAIEVETYGAAMPHARLPWDTLEVAQLSFPWV FT MALACVDGEVTLAGFSEAARTRPDINALAACVSVAQTQECDSLYPASGPARVTLRLRSG FT ERLSEWVADPLGSADRPLADEALDRKAAEAFGLAFPAARVRALIGQLRRLEPWPLAELN FT " FT misc_feature 1207627..1207686 FT /note="Signal peptide predicted for BPP1132 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.628) with cleavage site FT probability 0.603 between residues 20 and 21" FT CDS 1209072..1210067 FT /transl_table=11 FT /locus_tag="BPP1133" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 7.1e-45, 42.07% id in 328 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 ra1058 or sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 1.4e-47, 43.76% FT id in 329 aa" FT /protein_id="CAE36434.1" FT /translation="MSRKFLSALRNAGMCGAMMLGGLSAAPAAAADAWPGQPIRMVVPF FT APGGAVDTLGRLVAKQLTDVLGQTVVVENKPGAGGNIGSNIVAKAAPDGYTLLFGAAGN FT ITINPSLFDNMPYDVEKDLAPAALAGQSMNVLVVPAALPVDSVAELIDYARKHPDKLNY FT GSSGNGGTTHLAGELFNAMAGTRITHVPYQGSGPAMIDLLAGRVQLMFDNLPSAMPHIQ FT RGDLKALGVTGAMRSPQLPDVPTIAETGLAGFEATTWFGVFAPAGTPQAVLERLNGAVN FT QVMQSAPVEQKLQSMAAYFQPTTRAQFQTLIHDDTAKWARVIKAAGIKLN" FT misc_feature 1209072..1209161 FT /note="Signal peptide predicted for BPP1133 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.979 between residues 30 and 31" FT misc_feature 1209231..1210055 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 7.2e-123" FT CDS complement(1210098..1211483) FT /transl_table=11 FT /locus_tag="BPP1134" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT Mll9010 SWALL:Q982L5 (EMBL:AP003015) (457 aa) fasta scores: FT E(): 1.1e-23, 30.04% id in 436 aa, and to Rhizobium loti FT hypothetical protein Mlr6217 mlr6217 SWALL:Q98A01 FT (EMBL:AP003008) (446 aa) fasta scores: E(): 3.3e-17, 28% id FT in 432 aa" FT /protein_id="CAE36435.1" FT /translation="MNPALPATPSDRFAAGLAEVCQFVSTLSWDAIPDAVRQRAVDVLC FT DDLAAMAAAAPEPELRRYAALLTARAGTAESPLLSPALPRVGRMEAASWNALAGNWCEL FT DEGFRLAICHAGIYTLPALLAEATATRARLRDVLTALTGAYELVTRCAMSFHVMPPPVH FT GHALWSAVGAAAAVSLLRGHDAQTLLRAVSGAITTASMGPRSHLMAGVLIRNGWAAAGA FT LNGMQCADWAECGFGGAPASMEEVCAGIVKASLREGEITRELGTRWSLSHGYQKLYSCC FT QHGHSAVQACLALRADPGFEPQRIRAIRLDTHALALTLDTVHPTTTLGTRFSMPHMVAA FT ALALGTGSAAAFSQSTLSDPAVAALREKVRMRLADAPMPAPHDRPAWLEVELDDGQVLR FT ASCLSATGSPDNPVTPAQFEDKLARLGADVLPRLPQAIAPAAWQAALDEETGAWLAALA FT RQA" FT CDS complement(1211480..1212178) FT /transl_table=11 FT /locus_tag="BPP1135" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa0797 SWALL:Q9I5E1 FT (EMBL:AE004515) (240 aa) fasta scores: E(): 6.9e-29, 39.64% FT id in 227 aa, and to Vibrio cholerae transcriptional FT regulator, GntR family Vc1335 SWALL:Q9KSC3 (EMBL:AE004213) FT (235 aa) fasta scores: E(): 9.2e-26, 36.9% id in 233 aa" FT /protein_id="CAE36436.1" FT /translation="MKEKPITAIDKNGIDAPLTDVVYQRMLDGIYAGGLPPGGVINEVE FT LAREFGVSRGPVREAVRRLQGIQIVTREPYMKARVVAMSAESALELFQMRMGLEGVACF FT LATQRMSDADIAQLQRDMDAHYQSWAARREGAPNGEERHFDLHERIVRASGNKRIIAAL FT CEDLYHLLRIYRRHSGSALERKDDAYDEHWQIVRAIASRDARLAESLMRSHIERAANHV FT ASQLREPAIQ" FT misc_feature complement(1211936..1212115) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 0.00065" FT misc_feature complement(1211987..1212061) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT tRNA complement(1212419..1212495) FT /note="tRNA Asp anticodon GTC, Cove score 95.07" FT tRNA complement(1212531..1212606) FT /note="tRNA Glu anticodon TTC, Cove score 60.10" FT tRNA complement(1212638..1212713) FT /note="tRNA Ala anticodon GGC, Cove score 86.46" FT CDS 1213015..1214022 FT /transl_table=11 FT /locus_tag="BPP1136" FT /product="putative aldo/keto reductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1036" FT /protein_id="CAE36437.1" FT /translation="MRITRVGFGAWAIGGPGWSVGWGAQDDGESIRAIRHAVNRGINWI FT DTAAVYGLGHSESLVGRALAGMPPSERPYVFTKGGLVGSPADPMAKPRRIGAPDSLRRE FT VEASLRRLGVEAIDLYQMHWPAGDGTPLEVYWQALLDLRQAGKVRHVGLSNHNLAQVQA FT AEQLGHVETLQPPFSAIRRESAADLLPWCASHDTGVIVYSPMQSGLLSGAFSAERAAAL FT PEGDWRARNAEFMAPRLAANLEFADALKPIAQRHGASVGAIAVAWALAWPGVTGAIAGA FT RSAEQVDGWLGAATLELDSDDMRQIADALARTGVGGGPLLPPPDEAALALTARP" FT misc_feature 1213024..1213953 FT /note="HMMPfam hit to PF00248, Aldo/keto reductase family, FT score 8.5e-49" FT CDS complement(join(1214019..1214030,1214029..1215639)) FT /pseudo FT /transl_table=11 FT /gene="lnt" FT /gene_synonym="cutE" FT /locus_tag="BPP1137" FT /product="putative apolipoprotein N-acyltransferase FT (Pseudogene)" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1037" FT /db_xref="PSEUDO:CAE36438.1" FT misc_feature complement(join(1214932..1214997,1215037..1215102, FT 1215148..1215213,1215313..1215378,1215394..1215444, FT 1215481..1215546)) FT /note="6 probable transmembrane helices predicted for FT BPP1137 by TMHMM2.0 at aa 31-53, 65-82, 87-109, 142-164, FT 179-201 and 214-236" FT misc_feature complement(1215568..1215639) FT /note="Signal peptide predicted for BPP1137 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.814) with cleavage site FT probability 0.515 between residues 24 and 25" FT CDS complement(1215636..1216538) FT /transl_table=11 FT /gene="corC" FT /locus_tag="BPP1138" FT /product="magnesium and cobalt efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1038" FT /protein_id="CAE36439.1" FT /translation="MSAWTMSDPYPATEAHAQRAAKSSPKSLLDRLLSLVRREPEDREG FT IKAILEAAHERELLDAESYAMIKGALAVSERTVADIMVPRSRMDLLDISQPLPQLLATI FT IETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVRPAVFIPEVKRLNVLLR FT EFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDIEDEFDEDEEESIFPEGENQWRLT FT ASTDISHFNATFATDLPDDEYDSVGGWLGGQLGRIPRRGDSADHDGLHIEVVRADARRA FT LWLRVRRNAGAQPPASAAE" FT misc_feature complement(1215669..1215905) FT /note="HMMPfam hit to PF03471, Transporter associated FT domain, score 2.3e-19" FT misc_feature complement(1215951..1216112) FT /note="HMMPfam hit to PF00571, CBS domain, score 2.2e-05" FT misc_feature complement(1216131..1216295) FT /note="HMMPfam hit to PF00571, CBS domain, score 4.3e-08" FT CDS complement(1216664..1217137) FT /transl_table=11 FT /locus_tag="BPP1139" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1039" FT /protein_id="CAE36440.1" FT /translation="MATELSLSVQYGVADARLPRWRLRRWVQYALAGAAGDGHAGLAGA FT ELGLRLVGLAEGRRLNREFRGRDYATNVLTFEYGTGPDGVARGDIVVCVPVLAREAREQ FT RKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETVVLARMGIADPYLAA" FT misc_feature complement(1216715..1216984) FT /note="HMMPfam hit to PF02130, Uncharacterized protein FT family UPF0054, score 5.2e-28" FT CDS complement(1217127..1218149) FT /transl_table=11 FT /locus_tag="BPP1140" FT /product="PhoH-like protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1040" FT /protein_id="CAE36441.1" FT /translation="MSTSRSRARRTMPAIVNLDGDNIHLANLCGPLDENLRQLADGMGV FT KLARRGSRVTIEGEQAELAGRALRRFHEQATHRALSVDDIQLGLVEIGVGRPVEVQADP FT RELDQTLPPVDDESGGVVLRTRRTDLRPRTPRQRDYMNNILKHDITFGVGPAGTGKTWL FT AVACAIDAMERDTVQRLVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLMGFE FT RVQRLFEKQTIEIAPLAYMRGRTLNHAFVILDEAQNTTPEQMKMFLTRIGFGSKAVITG FT DPSQVDLPRGQQSGLAHAVQVLEEVQGIATTRFTSRDVVRHPLVARIVDAYDQAAANGD FT " FT misc_feature complement(1217151..1218128) FT /note="HMMPfam hit to PF02562, PhoH-like protein, score FT 7.7e-150" FT misc_feature complement(1217667..1217690) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1218146..1219573) FT /transl_table=11 FT /locus_tag="BPP1141" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1041" FT /protein_id="CAE36442.1" FT /translation="MQETTVKRDGASPSDAGTPATTAQGLGKLYIRTFGCQMNEYDSDK FT MADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDLGRVQHLKKQNPNLVIGV FT GGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRRAQGVSQVDISFPEIEKFDAL FT PPPRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFDDVLLEIADLADQGVKEVTL FT LGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIERIRYTTSHPKEMTQRMVDAYARLP FT KLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRLRAARPSLTLSSDFIVGFPGETE FT EDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDTPQDVKLRRLQQLQALINQQAA FT AIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFPGVPRLIGHMVDVVVTHAHTN FT SLRGRVAGIERDTSGAE" FT misc_feature complement(1218176..1218367) FT /note="HMMPfam hit to PF01938, TRAM domain, score 9.4e-16" FT misc_feature complement(1218989..1219051) FT /note="PS01278 Uncharacterized protein family UPF0004 FT signature." FT misc_feature complement(1219190..1219492) FT /note="HMMPfam hit to PF00919, Uncharacterized protein FT family UPF0004, score 2.6e-49" FT CDS 1219730..1220458 FT /transl_table=11 FT /locus_tag="BPP1142" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1042" FT /protein_id="CAE36443.1" FT /translation="MTAEPIAAFPPPKSGLPGQGLAGLLRRCLVPVLLLLGCAAWLDRP FT LTLWINRSVSPQVNTVFDYIGNLGDSGTYVALGLAAYILGLQGMLRGWAVPWGWTCEKI FT ARAGMLLLATLTAGGLVTWVLKNVVARARPEVLLDDGIYGMGRMFAGNPFNSFPSSHTQ FT TAFAVAAVLGILAPRWRWPALALAALVAISRVINRDHYLSDVCAAALIAVVAAYAIKPY FT VLSPSCTWPLRAPWRWRKRG" FT misc_feature join(1219787..1219855,1219943..1220011,1220039..1220104) FT /note="3 probable transmembrane helices predicted for FT BPP1142 by TMHMM2.0 at aa 20-42, 72-94 and 104-125" FT misc_feature 1219967..1220413 FT /note="HMMPfam hit to PF01569, PAP2 superfamily, score FT 1.6e-08" FT CDS complement(1220621..1221556) FT /transl_table=11 FT /gene="secF" FT /locus_tag="BPP1143" FT /product="protein-export membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1045" FT /protein_id="CAE36444.1" FT /translation="MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEF FT TGGTVMEVSYAQTAQLDQVRTAIGTLGYTDFQVQNFGTSRDVMIRLPIAEGQTSATQSE FT TVMGALKAADPAVELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKFAVA FT GVIANLHDVVIILGFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKA FT SVQEVINSAITQTISRTIITHGSTQMMVLAMLFFGGPTLHYFSLALTIGIWFGIYSSVF FT VAAALAMWMGVKREDLVKPVKKDGDEVEIA" FT misc_feature complement(1220678..1221472) FT /note="HMMPfam hit to PF02355, Protein export membrane FT protein, score 3.3e-97" FT misc_feature complement(join(1220681..1220746,1220759..1220824, FT 1220933..1220998,1221011..1221076,1221092..1221157, FT 1221440..1221505)) FT /note="6 probable transmembrane helices predicted for FT BPP1143 by TMHMM2.0 at aa 17-39, 133-155, 160-182, 186-208, FT 244-266 and 270-292" FT misc_feature complement(1221389..1221556) FT /note="Signal peptide predicted for BPP1143 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.625) with cleavage site FT probability 0.291 between residues 56 and 57" FT CDS complement(1221606..1223486) FT /transl_table=11 FT /gene="secD" FT /locus_tag="BPP1144" FT /product="protein-export membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1046" FT /protein_id="CAE36445.1" FT /translation="MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKV FT DQATLEQVQQIIENAQLPADSVYYEQNGTLGAVRARFPSTDVQLQARDLIDRTLNTVAG FT DPHYTVALNLLPASPPWMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLV FT ADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKL FT QLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVA FT KAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVVLTGEN FT LQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVTAPVI FT RSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYS FT TLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGM FT AIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPI FT RGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLSSISIGTVWKPKAN" FT misc_feature complement(1221663..1222439) FT /note="HMMPfam hit to PF02355, Protein export membrane FT protein, score 2.1e-06" FT misc_feature complement(join(1221666..1221731,1221744..1221809, FT 1221912..1221977,1221993..1222058,1222065..1222121, FT 1223400..1223465)) FT /note="6 probable transmembrane helices predicted for FT BPP1144 by TMHMM2.0 at aa 7-29, 455-474, 476-498, 503-525, FT 559-581 and 585-607" FT CDS complement(1223553..1223897) FT /transl_table=11 FT /locus_tag="BPP1145" FT /product="putative secreted protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1047" FT /protein_id="CAE36446.1" FT /translation="MSAIDTAGLVLAQAAPAEGNALMGMLPIVLMFVILYFLMIRPQMK FT RQKEHRNMVAALSKGDEVVTSGGMLGRVSKVTDSYITVEVSELADKPVEVVMQKTAVSA FT VLPKGTIKAL" FT misc_feature complement(1223580..1223840) FT /note="HMMPfam hit to PF02699, Uncharacterized secreted FT proteins, YajC family COG1862, score 6.8e-26" FT misc_feature complement(1223781..1223837) FT /note="1 probable transmembrane helix predicted for BPP1145 FT by TMHMM2.0 at aa 20-39" FT CDS complement(1224048..1225184) FT /transl_table=11 FT /gene="tgt" FT /locus_tag="BPP1146" FT /product="queuine tRNA-ribosyltransferase" FT /EC_number="2.4.2.29" FT /note="ortholog of Bordetella pertussis (BX470248) BP1049" FT /protein_id="CAE36447.1" FT /translation="MTGLQFELLATDGGARRGRLTLNHGVVETPIFMPVGTYGSVKAML FT PHELKEIGAQIVLGNTFHLWLRPGTAIMEKHGGLHGFMQWDKPILTDSGGFQMFSLQGM FT RKITEEGVKFASPIDGARLFLTPEESMRIQRSLNSDIVMVFDECTPYEIDGRPASVDEA FT ARSMRMSLRWARRSRDEFDRLGNPNALFGIVQGGMYEALRDESLAGLAEIGFHGYAIGG FT LSVGEPKEDMMRILAHVTPRLPAQAPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNAR FT NGWLFTRYGDVKIRNARYRDDTRPLDPSCACHTCGHFSRAYLHHLQRANEITGARLNTL FT HNLHFYLAIMEEMREAIAAGRFEAWRAQFAADRARGVD" FT misc_feature complement(1224072..1224803) FT /note="HMMPfam hit to PF01702, Queuine FT tRNA-ribosyltransferase, score 4.7e-135" FT CDS complement(1225181..1226254) FT /transl_table=11 FT /gene="queA" FT /locus_tag="BPP1147" FT /product="S-adenosylmethionine:tRNA FT ribosyltransferase-isomerase" FT /EC_number="5.-.-.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1050" FT /protein_id="CAE36448.1" FT /translation="MAAAFHRTYRVPTPLTLADFDYHLPPELIAQSPAAERGGSRLLHL FT DAASRLHDRRFPDLAGLLRPHDLLVFNDTRVIKARLTGQKATGGKVEVLVERITAPDRA FT LAHVRASKSPGPGMRLRLAEAFEAEVLGREGELFDLRFPAPVLDLLDAHGATPLPPYIT FT HAADATDERRYQTVYAREPGAVAAPTAGLHFDQPMLEQLAAQGVQRAFVTLHVGAGTFQ FT PVRVQNLAEHIMHAEWYTVPEATVAAIARARAHGGRIVAVGTTSVRALESAAAQAQDGP FT LAAAQGDTRLFITPGYRYRIVDALLTNFHLPQSTLLMLVSALAGVAPIRRAYAHAVAER FT YRFFSYGDAMFIETPAP" FT misc_feature complement(1225577..1226212) FT /note="HMMPfam hit to PF02547, Queuosine biosynthesis FT protein, score 1.2e-85" FT CDS 1226412..1227848 FT /transl_table=11 FT /locus_tag="BPP1148" FT /product="probable D-alanyl-D-alanine carboxypeptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1051" FT /protein_id="CAE36449.1" FT /translation="MRRAGKQGKWQQWLAGVMLALGAAGAAAQGLPSSMVAAWKATKLP FT DQSLSLVVQEINGPRLATLNAKEPRNPASVMKLVTTWAALSELGPSYAWRTEFLTEPGD FT RPDAHGVLRGPLYLRAGGDPQLLLQDLWALLRELRLRGVKQIGDLVVDRSIFGQVAIDP FT GAFDGASDRAYNASPDALMVGFGAQRLLFTPDAAARKWVPMIDPPLPGLRLEGAVEWSD FT VRCPGPPVVGTEPVVTQQGVSIRLSGKVAGSCGEFSLYRLALSQPEYASAVFRLLWREL FT GGTLKGQIRSGVVPPDAVVLASHDSPTLGEAIRTINKRSNNVMARTLLLTLGAERGRRP FT ATVESSGVVARTVLGAQGLEMPELVIDNGSGLSREGRVSADSLASMLTVAWNSPLMPEF FT ISSLAIAGVDGTVRRRLKGNGAQGMAHLKTGSLRDVRAVAGYVLGASGKRYVVVSMVNH FT ENAAAVRSFDDALVAWLAEQ" FT misc_feature 1226412..1226495 FT /note="Signal peptide predicted for BPP1148 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.866 between residues 28 and 29" FT misc_feature 1226625..1227782 FT /note="HMMPfam hit to PF02113, D-Ala-D-Ala carboxypeptidase FT 3 (S13) family, score 1.5e-65" FT CDS 1227938..1228579 FT /transl_table=11 FT /gene="upp" FT /gene_synonym="uraP" FT /locus_tag="BPP1149" FT /product="uracil phosphoribosyltransferase" FT /EC_number="2.4.2.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP1052" FT /protein_id="CAE36450.1" FT /translation="MPVHEIRHPLIRHKLGIMRRADLSTKSFRELSQEVAALLTYEATK FT DMPLAPASVEGWCGTVEVDKIAGKKVTVVPILRAGIGMLDGVLSLIPGAKVSVVGVARN FT EETLQAHTYLERLVGELDQRLALIVDPMLATGGSMVAAIDMLKRAGCREIRALTLVSAP FT EGIDAVLTAHPDVQIYTASIDQGLNENGYIMPGLGDAGDRIFGTTQKHAE" FT misc_feature 1227986..1228483 FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain, score 1.8e-09" FT CDS 1229069..1231837 FT /transl_table=11 FT /gene="prn" FT /locus_tag="BPP1150" FT /product="pertactin precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1054" FT /protein_id="CAE36451.1" FT /translation="MNMSLSRIVKAAPLRRTTLAMALGALGAAPAAYADWNNQSIIKAG FT ERQHGIHIKQSDGAGVRTATGTTIKVSGRQAQGVLLENPAAELRFQNGSVTSSGQLFDE FT GVRRFLGTVTVKAGKLVADHATLANVSDTRDDDGIALYVAGEQAQASIADSTLQGAGGV FT RVERGANVTVQRSTIVDGGLHIGTLQPLQPEDLPPSRVVLGDTSVTAVPASGAPAAVFV FT FGANELTVDGGHITGGRAAGVAAMDGAIVHLQRATIRRGDAPAGGAVPGGAVPGGAVPG FT GFGPLLDGWYGVDVSDSTVDLAQSIVEAPQLGAAIRAGRGARVTVSGGSLSAPHGNVIE FT TGGGARRFPPPASPLSITLQAGARAQGRALLYRVLPEPVKLTLAGGAQGQGDIVATELP FT PIPGASSGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQ FT QPAEAGRFKVLMVDTLAGSGLFRMNVFADLGLSDKLVVMRDASGQHRLWVRNSGSEPAS FT GNTMLLVQTPRGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQ FT PGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANAAVNTGGVGLAS FT TLWYAESNALSKRLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHA FT VAVAGGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIANSGFYLDATLRASRL FT ENDFKVAGSDGYAVKGKYRTHGVGVSLEAGRRFAHADGWFLEPQAELAVFRVGGGAYRA FT ANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVRTNGIAH FT RTELRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW" FT misc_feature 1229069..1229170 FT /note="Signal peptide predicted for BPP1150 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 28 and 29" FT misc_feature 1230449..1231831 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03212, Pertactin, score 1.3e-302" FT CDS complement(1231905..1233326) FT /transl_table=11 FT /gene="cysG" FT /locus_tag="BPP1151" FT /product="siroheme synthase" FT /EC_number="2.1.1.107" FT /note="ortholog of Bordetella pertussis (BX470248) BP1055" FT /protein_id="CAE36452.1" FT /translation="MTLFPIFADLTGRRVLVVGGGAVAVRKTQALLQAGAEVVVGAPRL FT DPALAALAEQGGIARLDGGFEPAWLAGAWLVVAATDDRAVNAAVSEAARARRVFCNVVD FT DAELSSFQVPSVVDRSPLIVAISSSGVAPVLARRLRERIESLFDHSLGQLAALAARYRP FT RIRAARPDLGQRRRFYDWLLDGPVAARLRQQQPGLAEQELEQALRAPQAAPRGSVVLVG FT AGPGDPGLLTLKALRALNEADIILYDRLVSEGVLALARRDAERVPVGKLPGEDHDATQA FT RIHALMLAQARAGRRVVRLKGGDAFIFGRGGEELEYLRAHDVPYEVVPGITAALACAAY FT AGIPLTHRDHAQSVRMVTAHCRADQDTLDWAGLARDQQTLAFYMGVGQLDYVTARLLEH FT GRAPATPFALIENGSRPEQRVVTGTLAELPEIARRRSVRPPALLVIGEVAALADTLQWF FT GQHQHGLPGPQALAA" FT misc_feature complement(1232040..1232678) FT /note="HMMPfam hit to PF00590, Tetrapyrrole FT (Corrin/Porphyrin) Methylases, score 7.3e-82" FT misc_feature complement(1232337..1232438) FT /note="PS00840 Uroporphyrin-III C-methyltransferase FT signature 2." FT misc_feature complement(1232622..1232666) FT /note="PS00839 Uroporphyrin-III C-methyltransferase FT signature 1." FT CDS 1233432..1234307 FT /transl_table=11 FT /locus_tag="BPP1152" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1056" FT /protein_id="CAE36453.1" FT /translation="MDAGRPWRGRPGTLGGRAGQNCLPGGAGRRNQCSISQRGPRPGPP FT NRAFQERPMMVRFFVSIGVLAWAGAAQAGVCDAKFMHDGGQVQLTGSGNIGLGADLGFT FT EVSKTNGDNCRARVQGMATFSYAGLPPGKSRLDYLMTVKNGQATFVKYAEAGEQPRSEG FT QFDLRMLGLFAYDKISGEGQRLPGASYRLRIGKEAPVGGQPTTVVRIGEKTVGARQDLS FT TALGRHACWPITYPRSSEPTMATFKGLTLPIPGMDTTVTDWYCPSVNLVMRQDIDQAGI FT KSSVEITQLK" FT misc_feature 1233597..1233656 FT /note="1 probable transmembrane helix predicted for BPP1152 FT by TMHMM2.0 at aa 56-75" FT misc_feature 1233810..1233833 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1234392..1234709 FT /transl_table=11 FT /locus_tag="BPP1153" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1057" FT /protein_id="CAE36454.1" FT /translation="MAARRSDEATKEKLIDSVKTSLNDAETLLREAASTTGDKATELRE FT RALASVRRTREALYDAQDAVLERGRRAARATDDYVHDNPWQAISIAGVTGLLLGLLISR FT R" FT misc_feature 1234644..1234697 FT /note="1 probable transmembrane helix predicted for BPP1153 FT by TMHMM2.0 at aa 85-102" FT CDS 1234750..1235163 FT /transl_table=11 FT /locus_tag="BPP1154" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1058" FT /protein_id="CAE36455.1" FT /translation="MGLRRSVFGVAASLVGLTRTRLELLALEAAGEKIRLIKLLGMAFG FT ALLFLTLAVLVFTITIAVAFWPTESRYAALGWLAGGYGVIGLVLFFLVRRDLVDGPVPF FT AATLEELGRDTDMLERVRDAQRASDGQRNAEDD" FT misc_feature join(1234879..1234947,1234960..1235028) FT /note="2 probable transmembrane helices predicted for FT BPP1154 by TMHMM2.0 at aa 44-66 and 71-93" FT CDS 1235165..1235524 FT /transl_table=11 FT /locus_tag="BPP1155" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1059" FT /protein_id="CAE36456.1" FT /translation="MARHSASVDRMVRLELLRARAALEREALAQGIVEAGRTLTPGNMV FT KSIWPSLGKANTSRLFWQAFALVRRYPFVSSTLSAMVMGRGARRSGLLKLAGVALVGWQ FT AYRIWQSAREERQAD" FT CDS complement(1235567..1237111) FT /transl_table=11 FT /gene="ubiD" FT /locus_tag="BPP1156" FT /product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase" FT /EC_number="4.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1060" FT /protein_id="CAE36457.1" FT /translation="MKYRDLRDFLAQLERQGELKRITAPVSTRLEMTEIADRVLRAGGP FT ALLFENARHNDAPADMPVLANLFGTPRRVAWGMGADDVGALRETGELLASLREPEAPKG FT LRDALAKVSMLKAALWDMSPKTVRSAACQEIVWEGADVDLGRLPIQTCWPGDVAPLLAW FT GLVITRGPNARRQNLGIYRQQPLGPNKLIMRWLSHRGGALDFRDHAQAHPGKSFPIAVA FT LGADPATILDAVTPVPDTLSEYQFAGLLRGSRTEVVKALGSDLSVPASAEIVLEGHLLP FT ADDPRAVAAAVPEGANPPPATGYEMALEGPYGDHTGYYNEQDWFPVFTVDRITMRRNPI FT YHSTYTGKPPDEPAVLGVALNEVFVPLLRRQLPEIVDFYLPPEGCSYRLAVVSIRKQYA FT GHAKRVMFGLWSVLRQFMYTKFIVVVDEDIDPRDWTEVVWAMTTRMDPVRDTVLVENTP FT IDYLDFASPVSGLGGKMGLDATNKWPGETSREWGTPIHMDEAVKRRVDAMWDTLGL" FT misc_feature complement(1235729..1237084) FT /note="HMMPfam hit to PF01977, VdcC family, score 1.2e-186" FT misc_feature complement(1236464..1236487) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1237195..1238025 FT /transl_table=11 FT /locus_tag="BPP1157" FT /product="putative transglycosylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1061" FT /protein_id="CAE36458.1" FT /translation="MPDASVAGLFRQLAQGVHHHLAEWLRISSVYLGIAVIVTVSMGFA FT LPGLRDQALQVHKALLTALAPTSMPSAELEPGAEAGADASSAVVMAIPSAPASNATGFL FT GPLRSDTPPAPPNRPSAASSAQVEALRNYISRKYKVAYDATAVLVNTVYKVGREKQLDP FT LLLLAVIAIESRYNPFAESPVGAQGLMQVMTRVHQDKFDAIAHVGKGNPLDPVANIHVG FT STILKDCINRRGSLNGGLACYVGATGPDDGGYGAKVLAERRRLALASGIALARD" FT misc_feature 1237273..1237341 FT /note="1 probable transmembrane helix predicted for BPP1157 FT by TMHMM2.0 at aa 27-49" FT misc_feature 1237642..1237992 FT /note="HMMPfam hit to PF01464, Transglycosylase SLT domain, FT score 6.2e-14" FT CDS complement(1238060..1239214) FT /transl_table=11 FT /locus_tag="BPP1158" FT /product="probable aminotransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1062" FT /protein_id="CAE36459.1" FT /translation="MPRLATRTNDFLTFQVVELFKEAQALQAAGRDIISLGIGEPDFTA FT PPQVVEALERAARAGLSGYSAPAGLSALREAIAAFYESEFGARVDPARIIVTAGASGAL FT ALACAALVNPGAQVLMPDPSYPANSNFVLAAGGQPRLIPSTAAKRFQLSAQDVRDHWND FT ATQGVLIASPSNPTGTSIAHDELAELLAAVRERQGFSIVDEIYLGLSYESQPRSALLLD FT DDIIVINSFSKYFHMTGWRLGWMIVPESMVAKVEKMAASLAICAPTLAQHAALACFTPD FT ALKIFEHRREAFKQRRDYLLPEFERLGIPVPVRPDGAFYIYADIAALGTTSMAFSHRLL FT HEGGVAAVPGLDFGPAHGERTMRFSYATGLDRLQEAVARIEKLL" FT misc_feature complement(1238066..1238980) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II, score 1.2e-34" FT CDS join(1239448..1239900,1239902..1240126) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1159" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1063" FT /db_xref="PSEUDO:CAE36460.1" FT CDS 1240144..1242531 FT /transl_table=11 FT /gene="maeB" FT /locus_tag="BPP1160" FT /product="NADP-dependent malic enzyme" FT /EC_number="1.1.1.40" FT /note="ortholog of Bordetella pertussis (BX470248) BP1064" FT /protein_id="CAE36461.1" FT /translation="MRSRPARAGAGSIFPACAAASFTFAAPTYVIAIMDANFRKAALEY FT HEHGRPGKISVTATKPLVTQRDLSLAYSPGVAAACEEIVEDPANVFRYTGRGKLVGVIT FT NGTAVLGLGNIGALASKPVMEGKAVLFKKFAGLDVFDIEINETDPDKLVEIIAGLEATF FT GGINLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVCAAVVNGLAVAGKRIEDVK FT LVTSGAGAAALACLDLLVDLGLPLEHIWVTDIEGAVYQGRTALMDPDKARYAQPTEART FT LAEVIEGADVFLGLSAGNVLKPEMVATMAANPLILALANPNPEILPEAAHAVRDDIIMA FT TGRSDYPNQVNNVLCFPYIFRGALDVGATTITREMEKAAVLAIASLAREEQNEVVAAAY FT GTYDISFGRDYLIPKPFDPRLIVRIAPAVAKAAMEGGVATRPIADLDAYAEQLQQFVYH FT SGAFMKPLFSQAKQIVRDGGRARIVFTEGEDERVLRAVQVIVDEKVAKPILVGRPQVLL FT SRIEKFGLRLRLGQDVEVCNPEYDERFHQYWTTYWELMCRNGITKEMARVEMRRRLTLI FT GAMMVHLGDADGMICGAVSGFHDHLRFIDQVIGRKPGATTYAAMNILLLDERTVALVDT FT HVNEDPSAEQIAEYTVAAAEEMQRLGLAPKVALLSRSNFGSGSSASGAKMRHALELVNR FT QAPGLEIDGEMHGDCALDESLRLRLLPDSPLKGSANLLVCPNVDSGNIAYNLLKTVAGK FT NVAVGPILLGANAPVHIVTSSATVRRIVNMAAMAVVNADAVR" FT misc_feature 1240144..1240218 FT /note="Signal peptide predicted for BPP1160 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.992 between residues 25 and 26" FT misc_feature 1240177..1240245 FT /note="1 probable transmembrane helix predicted for BPP1160 FT by TMHMM2.0 at aa 12-34" FT misc_feature 1240354..1241469 FT /note="HMMPfam hit to PF00390, Malic enzyme, score 8e-194" FT misc_feature 1241524..1242507 FT /note="HMMPfam hit to PF01515, Phosphate acetyl/butaryl FT transferase, score 1.3e-107" FT CDS 1242512..1243744 FT /transl_table=11 FT /locus_tag="BPP1161" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1065" FT /protein_id="CAE36462.1" FT /translation="MPTRSAERGAGRAGGARPLTGLVMTGGGARAAYQVGALSAIMAIL FT DPKARPGYPNPFPIICGTSAGAVNAAALACRADRPHLAVRRMRRLWASLETGMVYRADA FT PGLIRTGVRWLGLLSLGWMYAGLTRKRPQSLLDSSPLADLLGRVMDFDRMRHNLARGKL FT SALAITASGYTSGEHLTFYQSDRPIDPWHRFLRRAVPSAIGIDHIMASSAIPFVFPARP FT VRVHGQVEWCGDGSMRQLAPISPAIHLGATRVLVIGTGFHDDTHPEKREEDPPYPSLAQ FT VGGHALSSIFLDGLSMDVERLERTNFLLSRGGQEAEPEFALRRVDVLALTPSQSLDQLA FT LEHLDDMPSEARTLFRVLGVSSDPSRSNGGALMSYLLFEHTYTQRLIELGYADTMRRID FT DVVKFFGEAGA" FT misc_feature 1242575..1243252 FT /note="HMMPfam hit to PF01734, Patatin-like phospholipase, FT score 9.3e-11" FT CDS 1243741..1244205 FT /transl_table=11 FT /locus_tag="BPP1162" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1066" FT /protein_id="CAE36463.1" FT /translation="MTRNGQTTLQRQLRRGGALDHDGLDKQAVVDATRELGMSLLVADC FT DRARSRSAVLRAIAKAVDFPEYFGGNLDALYDCLCDTVLDHKTGIVLWLYRLHSGDPAL FT HEDSNLIDGVCADTAEFARENGRVFAYVIEHAGRHPDPEPGVAAAPYGEA" FT CDS complement(1244232..1244972) FT /transl_table=11 FT /locus_tag="BPP1163" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0998" FT /protein_id="CAE36464.1" FT /translation="MSLPRFYCDARLAPGERVALPEALAHHAVRVLRLRAGAALVLFDG FT AGGEYPATLEIEGKAAWAQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAW FT RVSPIAAQRSVLQLNGARAEKRLAHWQRIAQAAAEQCGRNRLMAVDAPQALAAWLAQAP FT GAALRLLCHPQAELDLAGALARHAAHDDICLLVGPEGGWSDEELEQARAAGVQAVRFGP FT RVLRTETAGIALIAAVSAIRGWNG" FT CDS 1245167..1247203 FT /transl_table=11 FT /gene="tktA" FT /gene_synonym="tkt" FT /locus_tag="BPP1164" FT /product="transketolase 1" FT /EC_number="2.2.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0999" FT /protein_id="CAE36465.1" FT /translation="MSNPTAPKLALADAIRVLAMDAVQKANSGHPGAPMGMAEIAQALW FT LGNLRHNPADPAWANRDRFVLSNGHGSMLIYALLHLTGYDLPLEELKNFRQLHSRTPGH FT PEVGITPGVETTTGPLGQGLANAVGMALAEALLAAEFNRAGHTVVDHHTYVFLGDGCLM FT EGISHEACSLAGTLKLSKLVALYDDNGISIDGHVEHWFADDTATRFEGYGWNVIRGVDG FT HDVAAVDAAIKQARAQSEKPTLIVCRTVIGKGSPNMAGTHNVHGAPLGNDEIAATRAAL FT GWSAGPFEVPQDIYAAWDSRPAGALAQAAWEDKFQAYAAQYPAEAAEFTRRMKGELPEG FT FAARFEAFLQATVAKGETVATRKASQFAIAELAGLLPEMLGGSADLTGSNFTDWKGVAP FT LRAGHHGVHFGRHINYGVREFGMAAIMNGIALHGGYLPFGGTFLTFSDYSRNAIRMAAL FT MKQRVVHVFTHDSIGLGEDGPTHQSIEHAASLRLIPNLSVWRPCDTVETAAAWGAAVTR FT PASIGMDVHDGGPTALLLSRQNLPFVARDEATQKAIVRGGYVLRDAHDARAAIIATGSE FT VAIALAAQELLAADGIAVRVVSMPSTDVFDRQDAEWKREVLPAGMPRVAVEAGVTAFWH FT KYVGLEGAVVGIDRYGESAPDGALFKFFGLTAEKVAEAVKQVL" FT misc_feature 1245185..1246180 FT /note="HMMPfam hit to PF00456, Transketolase, thiamine FT diphosphate binding domain, score 8.6e-227" FT misc_feature 1245212..1245274 FT /note="PS00801 Transketolase signature 1." FT misc_feature 1246238..1246792 FT /note="HMMPfam hit to PF02779, Transketolase, pyridine FT binding domain, score 2.5e-63" FT misc_feature 1246835..1247176 FT /note="HMMPfam hit to PF02780, Transketolase, C-terminal FT domain, score 4.8e-16" FT CDS 1247221..1248231 FT /transl_table=11 FT /gene="gap" FT /gene_synonym="hexC" FT /locus_tag="BPP1165" FT /product="glyceraldehyde-3-phosphate dehydrogenase" FT /EC_number="1.2.1.12" FT /note="ortholog of Bordetella pertussis (BX470248) BP1000" FT /protein_id="CAE36466.1" FT /translation="MTIRVAINGYGRIGRNILRAHYENGKKHDIEIVAINDLGDPKTNA FT HLTRFDTAHGKFPGTVTVDGDYMVVNGDKIRVLANRNPAELPWGELGVDVVLECTGFFT FT SKEKAGAHLKGGAKKVIISAPGGKDVDATIVFGVNQNVLKAEHTVISNASCTTNCLAPL FT VKPLHDKLGVETGLMTTVHAYTNDQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGLV FT LPELNGKLDGFAIRVPTINVSLVDLSFVAKRDTTVEEVNSILQAAAEGELKDILTYNTE FT PLVSVDFNHNPASSNFDATLTKVSGKLVKVSSWYDNEWGFSNRMLDTTVALMSAK" FT misc_feature 1247224..1247685 FT /note="HMMPfam hit to PF00044, Glyceraldehyde 3-phosphate FT dehydrogenase, NAD binding domain, score 1.8e-90" FT misc_feature 1247677..1247700 FT /note="PS00071 Glyceraldehyde 3-phosphate dehydrogenase FT active site." FT misc_feature 1247686..1248165 FT /note="HMMPfam hit to PF02800, Glyceraldehyde 3-phosphate FT dehydrogenase, C-terminal domain, score 7e-99" FT CDS 1248265..1249542 FT /transl_table=11 FT /gene="pgk" FT /locus_tag="BPP1166" FT /product="phosphoglycerate kinase" FT /EC_number="2.7.2.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP1001" FT /protein_id="CAE36467.1" FT /translation="MVFPSRGNGSGPFRRQAPDAIHTGTEYSMSNVNTLSALAKSGALS FT GKRVFIRADLNVPFDDAGRISEDTRIRASVPGIRLALDAGEAVMVTSHLGRPKEGALTE FT ADSLAPVAQRLSELLGMQVRLVPDWVDGVSVEPGEVVLLENCRGNVGEKKDDEGLSRKM FT AALCDVYVNDAFGTAHRAEATTHGIARFAPVACAGPLLEAELEALGRALHDPKRPLVAI FT VGGSKVSTKLSILQSLADKVDQLVVGGGIANTFMLAAGLPIGKSLAEPEQVEQARAVIE FT IMKRRGAEVPIPTDVVCAKSFGADAAATVKAAADVAEDDMILDIGPQTAQRLADILKAA FT GTIVWNGPVGVFEFDQFAHGTEVVARAIADSAGFSIAGGGDTLAAIAKYGIADQTGYIS FT TGGGAFLEFLEGKALPAVAVLQARAA" FT misc_feature 1248352..1249536 FT /note="HMMPfam hit to PF00162, Phosphoglycerate kinase, FT score 1.9e-176" FT misc_feature 1248406..1248438 FT /note="PS00111 Phosphoglycerate kinase signature." FT misc_feature 1249039..1249062 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1249572..1250345) FT /transl_table=11 FT /gene="fabI" FT /gene_synonym="envM" FT /locus_tag="BPP1167" FT /product="enoyl-[acyl-carrier-protein] reductase [NADH]" FT /EC_number="1.3.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP1002" FT /protein_id="CAE36468.1" FT /translation="MNAAAPLQGRRGLVTGIANQDSIAWGCARAFRALGAELAVTYLND FT KARVHVEPLARSIDAALLLPLDLRVDGQLESVFEQIGTRWGSLDFVMHSIAYAPRDDLQ FT GRVVDCSRAGFLQAMDISCWSFIRMAHLAEPLMPKGGTLFCMTYYGSQMVVEHYNMMGP FT VKAALESATRYLAAELGPQGIRVHAISPGPLKTRAASGITGFDALLDRAQAKAPARSLV FT GIDDVGEATAWLATDAARRITGQTLYIDGGYHIID" FT misc_feature complement(1249587..1250324) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 3.3e-08" FT CDS complement(1250342..1251532) FT /transl_table=11 FT /gene="ackA" FT /gene_synonym="ack" FT /locus_tag="BPP1168" FT /product="acetate kinase" FT /EC_number="2.7.2.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP1003" FT /protein_id="CAE36469.1" FT /translation="MSDNLLVINAGSSSLKFYLYEIAEGDELRPTLGGQLDGIGGSRPH FT LRIRAQDGHTLLERDVAPTHAADVPGAQEVLGTWLSGHLGGAPCAIGHRVVHGGTQYDA FT PVLVDDDVLAQLDDLTPLAPLHQPNNLAPIRVIRERRPNIPQVACFDTAFHRTHSPLAD FT RYALPEHLYQEGVRRYGFHGLSYEYIAQRLRRALPEIAGGKIVAAHLGNGVSACAMVDG FT RSVDSTMGFTALEGLPMGTRPGRLDPGVVLWMMERGMSHDDIEHLLYHDCGLKGLSGIG FT NDVRELLASDAPAARLALDYFAWRVAEGIAGLGCAMNGIDAIVFTAGIGENAAPVRAAI FT ARHWEWLGVRLDQARNARHGPRISSDDSAIGVYVVRTNEELIIAQHTLALVRQGQA" FT misc_feature complement(1250378..1251523) FT /note="HMMPfam hit to PF00871, Acetokinase family, score FT 1.2e-113" FT misc_feature complement(1251485..1251520) FT /note="PS01075 Acetate and butyrate kinases family FT signature 1." FT CDS complement(1251558..1252496) FT /transl_table=11 FT /locus_tag="BPP1169" FT /product="phosphate acetyl/butaryl transferase" FT /EC_number="2.3.1.19" FT /note="ortholog of Bordetella pertussis (BX470248) BP1004" FT /protein_id="CAE36470.1" FT /translation="MSATRHNHYERLIAHARTLPALPCAVAHPCDETSLGAALQAMQLG FT LLTPILVGPQQKIRDVAERCGLDLGGAAIVDAPHSHAAAAAAVQLVRGGQASLLMKGSL FT HTDELMHEVVARDTGLRTERRISHVFIMDVPTYPEPLFITDAAINIFPDLETKADIVRN FT AIALHLGLGLGEPRVAILSAVEQVMPSIPSTLEAAALCKMADRGQIQGGILDGPLALDN FT AISPEAAQVKGIVSPVAGRAQVLVVPDLEAGNMLAKNLSFLANAQAAGIVLGARVPIVL FT TSRADSAQTRLASCAVATLYAHHLARATPLA" FT misc_feature complement(1251600..1252478) FT /note="HMMPfam hit to PF01515, Phosphate acetyl/butaryl FT transferase, score 3.5e-27" FT CDS complement(1252493..1254766) FT /transl_table=11 FT /locus_tag="BPP1170" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1005" FT /protein_id="CAE36471.1" FT /translation="MAAPAADRTAPDRSPAPAAHPAANLWTSAYQYTLDAWQRGILYTD FT VMRQRGNQYLTHMAKRAPNVLSMKSELVLDGRKFERPVNYALLRIVPPADAPVDPQKRP FT FLVVDPRAGHGPGIGGFKPESEIGVAVRAGHPCYFATFLPHPTDTQTVEDVMRAEARFL FT EEIIALHPQAEGRPVVVGNCQAGWQIMMTAAMRPELFGPIIVAGAPLSYWAGWRDMNPM FT RYSGGLLGGSWLTQMTSDLGNGKFDGAWLVQNFENLNPANTLWSKQYNLYAKVDTEAPR FT YLEFEKWWGGHVFFNGPEIQYIVDNLFVGNRLATAGLVTSDGIRIDLRNIRSPIIVFCS FT KGDNITPPPQALGWITDLYQDDREVVAHNQTIVYAVHESIGHLGIFVSGAVARKEHQEF FT TANIDVIDVLPPGIYQAEIADKTPDTPNADLAYGDYVLSFERRRLDDVRAIVERNEEDD FT QRFAAVARISDINLGLYRSFVQPWVRAAVTPQSAEWMQRMHPLRLPYELISDRNPWVAP FT VAQLAEQVREQRQPAAPDNPFWALQKMASDAIVAGLDIWRDLRDSACERIFMATYGSPL FT VQDWAGLGAKDGPPRRHPGVSPEHRDFMAARAAELRAQIDQGGLREAGLRMLLYVSGAE FT GGVDERSFAMIRKMRADTDAKLSLQAFKDATRDQALMMQLDGPAAIRAIPKLLENASAA FT DIRATLHGITHVLEAAGPLSDRARASLDEMKRLFQGAERRAVKRADAPAPARKAAAPRK FT RRTA" FT CDS complement(1254921..1255628) FT /transl_table=11 FT /locus_tag="BPP1171" FT /product="probable glutathione S-transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1006" FT /protein_id="CAE36472.1" FT /translation="MRYAVPIGRRGTRGACRPRSPPLPAPLTLYVDARFRSPYAMSAHV FT ALAEKQLEFEVRLVDLAAGEQRMQPYQSRALTARVPALAHAGFHLTESSAIQEYLEDAF FT APPAHPALYPAGAQARARARQVQAWLRTDLAALRRARPIDSVFDAPATTPLDDAAHCDA FT AKLIRVAEALLPPGQAHLFGAWSIVDTELALALNRLAHSGDDLPAPLRDYAAAQWQRAS FT VQAWLRHYEAARG" FT misc_feature complement(1255323..1255553) FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal domain, score 3.8e-11" FT CDS complement(1255666..1255995) FT /transl_table=11 FT /locus_tag="BPP1172" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1008" FT /protein_id="CAE36473.1" FT /translation="MKMHDIPFGTTDWSTVPETEHPGESGKALWRTRQFGDIRVRVVEY FT TPGYLADHWCSKGHILFCLEGELHTELEDGRTFVLTPGMSYQVADQAEAHRSSTRGGAR FT LFIVD" FT CDS complement(1256027..1256575) FT /transl_table=11 FT /locus_tag="BPP1173" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1009" FT /protein_id="CAE36474.1" FT /translation="MPTPADLQLLADYNQWMNQRLYACAAQLPPDELARERGAYFGSLL FT GTLNHVAVGDRVWLQRFAAHPARPAALQPVLALPTPARLDEVLYPALGPLAAHRAWLDR FT CIVDWAAQLRPDDLACELAYTSLAGEAARRPFGGLVLHFFNHQTHHRGQATTLLSQAGI FT DMGATDLVLRVPASGDAPA" FT CDS complement(1256594..1257079) FT /transl_table=11 FT /locus_tag="BPP1174" FT /product="putative acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1010" FT /protein_id="CAE36475.1" FT /translation="MLEIIEADFNDAAHARAIITLLDEYARGPMGGGEPLSAHARANLV FT AELARRPHARALLAWQDGEPAGLAICIEGFSTFACRPLLNLHDLAVAERFRGQGVGTRL FT LEALEALAARLGCCKVTLEVLEGNTRAQALYRRLGYAGYELAADTGRAMFWQKKLSA" FT misc_feature complement(1256657..1256911) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 2.4e-22" FT CDS 1257257..1258195 FT /transl_table=11 FT /gene="cbpA" FT /locus_tag="BPP1175" FT /product="curved DNA-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1011" FT /protein_id="CAE36476.1" FT /translation="MEFKDYYKILGVQSDAPEDEIRRAYRKLARKYHPDVSKESDAETR FT MRDVNEAYDVLGNQEKRQAYDNLAAGVALDGGFQPPPGWDQGFEFHYARDGEGDQQFSD FT FFSSLFGGQARRRAAQQDFRARGEDHHAAIEVDLEDALRGATRDISLRSMQPDEHGQPQ FT VRTRTLSVRIPAGVREGQYIRLAGQGMPGYGGAENGDLYLEVRFKPHPRYRAEGRDLYM FT NLPVAPWEAALGAQVEAPTPGGAVEVAVPPGSRNGRKLRLRGRGIPGDPPGDLYLVLDL FT VLPPADSEAAREAYRKMAQDLAFDPRRNLGV" FT misc_feature 1257269..1257463 FT /note="HMMPfam hit to PF00226, DnaJ domain, score 4e-28" FT misc_feature 1257797..1258153 FT /note="HMMPfam hit to PF01556, DnaJ C terminal region, FT score 2.1e-27" FT CDS 1258198..1258515 FT /transl_table=11 FT /locus_tag="BPP1176" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1012" FT /protein_id="CAE36477.1" FT /translation="MSKIVVTQATVIGKTRALSAEELAHACDAEVEWVARLVEVGIVPA FT RGRQPAEWRFYSLDLRRAREARRLERDMGAGLDAAALILDLCQEVRQLKARLRALGEPP FT A" FT CDS 1258561..1259274 FT /transl_table=11 FT /locus_tag="BPP1177" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1013" FT /note="Similar to Escherichia coli hypothetical protein FT YgaZ or B2682 SWALL:YGAZ_ECOLI (SWALL:P76630) (245 aa) FT fasta scores: E(): 1.7e-24, 37.82% id in 230 aa, and to FT Yersinia pestis putative amino acid transporter Ypo3264 FT SWALL:Q8ZBX0 (EMBL:AJ414156) (257 aa) fasta scores: E(): FT 4.5e-23, 38.72% id in 235 aa" FT /protein_id="CAE36478.1" FT /translation="MRSKPIDAPGPPGAPVSAGLKACVPVMIGYFPVAVAFGIAGLAAG FT LQPLQVILISVFVYAGASQFLLLASIKAGTPWLWVVALCSLLNARHLLYGPLLARFLPE FT SLRERLRIAFLLTDEVFATAFNRIGAVEPASRGRWITALGLGAWATWIAGTAVGVYAGE FT GLERHYPVLSQVMRFALPALFLALVCQSMQPGMRRPVLAALAVGGALAAVGQTTLAILA FT GAAAGCLCHRPERRA" FT misc_feature 1258630..1259121 FT /note="HMMPfam hit to PF03591, AzlC protein, score 1.2e-33" FT misc_feature join(1258630..1258698,1258711..1258779,1258789..1258857, FT 1258975..1259043,1259071..1259124,1259158..1259226) FT /note="6 probable transmembrane helices predicted for FT BPP1177 by TMHMM2.0 at aa 24-46, 51-73, 77-99, 139-161, FT 171-188 and 200-222" FT CDS 1259271..1259615 FT /transl_table=11 FT /locus_tag="BPP1178" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1013" FT /note="Similar to Mus musculus interferon stimulated gene FT 12 Isg12 SWALL:AAM10443 (EMBL:AY090098) (90 aa) fasta FT scores: E(): 3.2, 41.42% id in 70 aa" FT /protein_id="CAE36479.1" FT /translation="MTGESIGFWAAVAAMAVITYLTRALPFMLSTRSRLLRRLSEEGSA FT LAALGPSLLAGIAAAVIVPDLVGAQAVDGRGAYIGGLVVTAVAARLVGNSGAAVILGLA FT GYGLLLALGL" FT misc_feature join(1259283..1259351,1259409..1259477,1259538..1259606) FT /note="3 probable transmembrane helices predicted for FT BPP1178 by TMHMM2.0 at aa 5-27, 47-69 and 90-112" FT CDS complement(1259636..1261303) FT /transl_table=11 FT /gene="pitA" FT /gene_synonym="pit" FT /locus_tag="BPP1179" FT /product="probable phosphate transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1014" FT /protein_id="CAE36480.1" FT /translation="MDMAGIAGGGGGTERAARAGPPQAGPGTAAPEDLSRHSNAPRGAP FT GAGHKSAIIPPHDTPLLAPMLHLFSGLDLWVGLSLVLALTFVLAFEFINGFHDTANAVA FT TVIYTKAMPPHLAVILSGIFNFLGVLLGGVGVAYAIVHLLPVELLINVDTGRGLAMVFA FT MLSAAIAWNLGTWYFGIPASSSHTLIGSILGVGMANALLTDISLAEGVNWGKAIDIGLS FT LVVSPVAGFMVAGGILLLLKRWLPLSKMHKTPEQRRAIDAKKHPPFWNRLVLVLSAMGV FT SFVHGSNDGQKGIGLIMLVLIGIVPAKFVLDVNSTTYQIDRTRDAASHLSAFYHRNEAT FT LGEFLALSRGGNGADLPKTFRCDPKLTMPTIAALQDDLRGVTNYADLSADKRIDVRRYL FT LCLDDTAKKVARLEGLPARERADLQRLRGDLTATTEYAPLWVIVAVALALGIGTMVGWR FT RVVLTVGEKIGKQGMTYAQGMAAQVTAVGAIGLANVFSLPVSTTHVLSSGVAGTMVANN FT SGLQGGTVRTILMAWVLTLPASMLLSAGLFWVGTLLAA" FT misc_feature complement(join(1259654..1259719,1259819..1259884, FT 1259930..1259995,1260371..1260421,1260452..1260502, FT 1260581..1260646,1260677..1260742,1260764..1260829, FT 1260890..1260955,1261016..1261081)) FT /note="10 probable transmembrane helices predicted for FT BPP1179 by TMHMM2.0 at aa 74-96, 116-138, 158-180, 187-209, FT 219-241, 267-284, 294-311, 436-458, 473-495 and 528-550" FT misc_feature complement(1259675..1261024) FT /note="HMMPfam hit to PF01384, Phosphate transporter FT family, score 6.2e-75" FT CDS 1261287..1261946 FT /transl_table=11 FT /gene="mog" FT /gene_synonym="mogA" FT /gene_synonym="chlG" FT /locus_tag="BPP1180" FT /product="molybdopterin biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1015" FT /protein_id="CAE36481.1" FT /translation="MPAMSTPTSPSAPLVRRHPDELLIGLVSISDRASTGVYQDQGLPS FT LRDWLGTALTSPWQAVERLIPDEPAAISAALVDLVDGCGCDLVLTTGGTGPARRDCTPE FT ATLAVATKEMPGFGEQMRQISLRFVPTAILSRQVAVIRETAGHAALIINLPGQPKAIRE FT TLEGLKDADGAVLAAGVFAAVPYCIDLIGGPYAETDPAVIKAFRPKSALRQPAARQ" FT misc_feature 1261347..1261799 FT /note="HMMPfam hit to PF00994, Probable molybdopterin FT binding domain, score 3.5e-30" FT misc_feature 1261545..1261586 FT /note="PS01078 Molybdenum cofactor biosynthesis proteins FT signature 1." FT CDS 1262000..1262335 FT /transl_table=11 FT /locus_tag="BPP1181" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1016" FT /protein_id="CAE36482.1" FT /translation="MKARFALLALGLALAGCANVKDIRDREPAFYGSPQRSAQEYAACV FT SAAWKGLGVPVEQREIRNGYELVSRGSLGVDAVLTTTTWQGKTDASLSTRLPQSGQQLV FT DAANLCL" FT misc_feature 1262000..1262059 FT /note="Signal peptide predicted for BPP1181 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.939 between residues 20 and 21" FT misc_feature 1262018..1262050 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1262326..1263192 FT /transl_table=11 FT /locus_tag="BPP1182" FT /product="putative peptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1017" FT /protein_id="CAE36483.1" FT /translation="MPVSAAARLWRGAWLALALLAAQGAQAQGYISRKLSAPVPGGVAV FT VDLGQAAQAPEVTYRGRPVMVLREADGPWIAVVGIPLAARPGSEAISVRSPGGAARSIA FT FDIGAKTYTAQHIKLKNQRQVTPNPDDLKRIERELAEQTQAYRIFRAGVTPSNVLLDRP FT VPGRLSSPFGLRRFFNGQERNPHSGLDFAAAAGTPIKAPAAGRVVLVGDYFFNGKTVFV FT DHGQGFISMFCHMSEIDVKVGDEVPRGGVVGKVGATGRATGPHLHWNISLNDARVDPAI FT FIGAFKP" FT misc_feature 1262326..1262406 FT /note="Signal peptide predicted for BPP1182 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.988 between residues 27 and 28" FT misc_feature 1262923..1263171 FT /note="HMMPfam hit to PF01551, Peptidase family M23/M37, FT score 6.9e-26" FT CDS complement(1263209..1263490) FT /transl_table=11 FT /locus_tag="BPP1183" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1018" FT /protein_id="CAE36484.1" FT /translation="MTDKHETLREAADRLNSARRAFGLGEDGLRLLRRSREAFINSLRN FT TGLTYAQAQVKYDNCLDEQQQLHQQAIHELQYAERLHRQLLAELEQTA" FT CDS complement(1263564..1263827) FT /transl_table=11 FT /gene="infA" FT /locus_tag="BPP1184" FT /product="translation initiation factor IF-1" FT /note="ortholog of Bordetella pertussis (BX470248) BP1019" FT /protein_id="CAE36485.1" FT /translation="MAKEELIELNGIVDEVLPDSRYRVKLDNGIEVGAYASGRMRKHRI FT RILAGDRVTLEMSPYDLTKGRINFRHKDERSGPPSRPPQHRR" FT misc_feature complement(1263612..1263824) FT /note="HMMPfam hit to PF00575, S1 RNA binding domain, score FT 0.00034" FT CDS complement(1264190..1264594) FT /transl_table=11 FT /locus_tag="BPP1185" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1512" FT /protein_id="CAE36486.1" FT /translation="MLNGSCLCGRVAYTVDGPLADVVNCHCAMCRKAHGAAFRTRATVR FT AEHFAFVRGEGDITWYSSSPGSYRGFCSACGTPLLSRFDQTPDVYALPLGALDDDPGVK FT AACHVYVAHKAPWHDITDDLPRHPEGRPGH" FT CDS complement(1264668..1265867) FT /transl_table=11 FT /locus_tag="BPP1186" FT /product="formate dehydrogenase" FT /EC_number="1.2.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1513" FT /protein_id="CAE36487.1" FT /translation="MAKILCVLYDDPVGGMPATYARDSLPAIARYPGGATLPTPLALDF FT TPGHLLGCVSGELGLRPFLQARGHTLVVTADKDGPGSVFERELPDADVVISQPFWPAYL FT TAARIAKAPRLKLAITAGIGSDHVDLQAAAQHGLTVAEVTYSNSISVSEHVVMMVLALV FT RNYLPSYQCVLDGGWNIADCVARSYDLEGMQVGVVGAGRIGSAVLRRLKPFDVGLHYTD FT QHRLPAATEQELGARYHPDAAALAGACDVISLHCPLHPGTEHLFDAAMLARMKRGAYLI FT NTARGKICDRDAVVQALASGQLAGYAGDVWFPQPAPRDHPWRSMPHHGMTPHISGSSLP FT AQARYAAGTREILECWLDGRAIRTEYLIVDQGRLAGAGAHAYTPGDTTAGSEDAARFHP FT " FT misc_feature complement(1264869..1265429) FT /note="HMMPfam hit to PF02826, D-isomer specific FT 2-hydroxyacid dehydrogenase, NAD binding domain, score FT 1.4e-83" FT misc_feature complement(1264998..1265048) FT /note="PS00671 D-isomer specific 2-hydroxyacid FT dehydrogenases signature 3." FT misc_feature complement(1265202..1265285) FT /note="PS00065 D-isomer specific 2-hydroxyacid FT dehydrogenases NAD-binding signature." FT misc_feature complement(1265433..1265729) FT /note="HMMPfam hit to PF00389, D-isomer specific FT 2-hydroxyacid dehydrogenase, catalytic domain, score FT 5.6e-32" FT CDS complement(1265901..1266227) FT /transl_table=11 FT /locus_tag="BPP1187" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1514" FT /protein_id="CAE36488.1" FT /translation="MPLYDYACPQCGPFRAWRALREAGGPLACPQCGEHAPKAVTAPFL FT ADMNPAVRQAHARNEKSAHEPTVASRPAPGHDHGHGHGHAPVPAGLGPGPWVVSPHRSM FT VGHH" FT CDS complement(1266250..1266765) FT /transl_table=11 FT /locus_tag="BPP1188" FT /product="putative transporter protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1515" FT /protein_id="CAE36489.1" FT /translation="MLLGLTLLYVGAVLFLNGLWLLEKIGDKEIWIINIFSGALTLLVS FT LRLAFGEDATPLSVRAAALTLLFTFTYIWVALNRYNGADGRGLGWYSLFVALTAVPVAL FT QTLAGATTLRGYWLGLNWVAWAVLWFMFFLLLVKKRPIARATGILTVLEGIVTGWIPGF FT LLLNGMLA" FT misc_feature complement(join(1266256..1266321,1266358..1266423, FT 1266439..1266504,1266526..1266582,1266613..1266678, FT 1266700..1266750)) FT /note="6 probable transmembrane helices predicted for FT BPP1188 by TMHMM2.0 at aa 5-22, 29-51, 61-80, 87-109, FT 114-136 and 148-170" FT misc_feature complement(1266256..1266762) FT /note="HMMPfam hit to PF02293, AmiS/UreI family FT transporter, score 6.9e-57" FT CDS complement(1266824..1268065) FT /transl_table=11 FT /gene="fmdA" FT /locus_tag="BPP1189" FT /product="formamidase" FT /EC_number="3.5.1.49" FT /note="ortholog of Bordetella pertussis (BX470248) BP1516" FT /protein_id="CAE36490.1" FT /translation="MAQTAFHVEFNKAPEDQATKTHNRWHPDIPMVEWFNPGDEFRVEC FT YDWTGGQISNDDSANDVRDVDLTRVHYLSGPFGVKGAEPGDLLVVDLLVVDLLDVGALP FT ESAWGFTGIFARENGGGFLCEHFPDARKACWDFHGIYTTSRHVPNVRWPGIIHPGLIGC FT LPDRALLERANKREAALLATDPNRVPPLLAPPYADTALMGQMNGEAARKAGAEAWRTVP FT PREHGGNCDIKNLSRGSRVYFPVYVKGGGLSMGDIHWSQGDGEITFCGAIEMAGFLDIR FT VDLIKDGINKYGIVNPIFKPSPIEPHFTEYLVFEGISVDEHTGEQYYLDAHVAYRRACL FT NAIEYLKKFGYTGEQAYIILGTAPVEGRISGIVDIPNACCTLAIPTEIFDFDIRPNAAG FT PSAKVGKAKVAVTS" FT misc_feature complement(1266890..1268056) FT /note="HMMPfam hit to PF03069, Acetamidase/Formamidase FT family, score 8e-221" FT CDS complement(1268243..1269373) FT /transl_table=11 FT /locus_tag="BPP1190" FT /product="putative LuxR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1517" FT /protein_id="CAE36491.1" FT /translation="MDAKPAAAAAAQTEDRLLHVLYGTLNDDTQWQQVLAALCRRFATR FT AAALAHYDFDAGAGRILYQAPADGPLQAIYDQGRPINPWFLSKAPYLPGRILDSPELIA FT PEDFLQTDFYREILRPHGLFHRLCGVLARQRNHVWYLVLHRRKEQMPFDSADRARLRTL FT MPHLMTVFEVRTRCAAQVRLAGLLARIVQAYLPPVLVLDRDGAVLHGEIAADALPAQLR FT LVDGRLATRDAALQKALRDRIRRMAEAAQAGKPGRASLALDEADGAAPIQLTLCALGPD FT TNAQGGQAGALVGLLISDPGQDARQAMRRFADHFALSPAEEKVSALILQGMTPARVARS FT LHISEHTVRSHLKQIFRKTNTHRQAELMSLRERADY" FT misc_feature complement(1268249..1268434) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family, score 0.0016" FT CDS 1269608..1270150 FT /transl_table=11 FT /locus_tag="BPP1191" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1518" FT /protein_id="CAE36492.1" FT /translation="MTAIVTAVCSSPGHTFSKPVREAITLVAGLGVAGDAHQGVMVRHR FT SRVRADPGQPNLRQVHLIHGELHDALQQAGFNVAEGTLGENITTRGIDLLDLPRDSLLY FT LGGQAIVRITGLRNPCAQLDRYQRGLMAAVLERDAAGGLVRKAGIMAVVEAGGDVRAGD FT PIEIVLPPPPHYRLGCV" FT misc_feature 1269692..1270123 FT /note="HMMPfam hit to PF03473, MOSC domain, score 1e-09" FT CDS 1270326..1271390 FT /transl_table=11 FT /gene="fba" FT /gene_synonym="fda" FT /gene_synonym="cbbA" FT /locus_tag="BPP1192" FT /product="fructose-bisphosphate aldolase" FT /EC_number="4.1.2.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP1519" FT /protein_id="CAE36493.1" FT /translation="MALVSMRQLLDHAAEHGYGIPAFNVNNLEQVQAIMEAAAETDSPV FT IMQASAGARKYAGEGFLKYLIQAAVESYPHIPVVMHQDHGQSPAVCQGAIDLGFSSVMM FT DGSLKEDGKTIADYDYNVDVTKKVVDMAHKLGVTVEGELGCLGSLETMQGDKEDGHGAD FT GKLTMEQLLTDPEQAADFVRRTQLDALAIAIGTSHGAYKFTRKPTGDILSIARIKEIHA FT RLPNTHLVMHGSSSVPQDLLAEIREFGGDMKETYGVPVEEIQEAIKFGVRKINIDTDIR FT LAMTGAIRCFFAENPSKFDPREYLKPARAAAKAICVQRYTQFGTAGNASKIKPLPLADM FT AQQYAAGKLAQVVQ" FT misc_feature 1270329..1271312 FT /note="HMMPfam hit to PF01116, Fructose-bisphosphate FT aldolase class-II, score 1.3e-166" FT misc_feature 1270542..1270580 FT /note="PS00602 Fructose-bisphosphate aldolase class-II FT signature 1." FT misc_feature 1270740..1270775 FT /note="PS00806 Fructose-bisphosphate aldolase class-II FT signature 2." FT CDS complement(1271476..1271889) FT /transl_table=11 FT /locus_tag="BPP1193" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1520" FT /protein_id="CAE36494.1" FT /translation="MSPAPAAGTPADIHTYTGGCLCQAVRFRATGPLLAAATCHCRECQ FT YLSGGALRLERGAPREYHYRSAAGRRVMRSFCADCGTPLFGHTEDAGYTVVRAGALDEP FT ARFANQLTVWTASAPPWHAIDTAHPHFAGNAPS" FT CDS 1272115..1272996 FT /transl_table=11 FT /gene="purC" FT /locus_tag="BPP1194" FT /product="phosphoribosylaminoimidazole-succinocarboxamide FT synthase" FT /EC_number="6.3.2.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP1521" FT /protein_id="CAE36495.1" FT /translation="MTSALHESSIKSLPLLGRGKVRDMYAVGDDKLLIVASDRISAFDV FT ILDDPIPGKGQVLTELTDFWLRKLAHILPNHSTGIQPEDVVAPDEVDQVRGRAVVVKRL FT KPILVEAVARGYLIGSGWKDYQASGSVCGIALPAGLQQASQLPEPIFTPAAKAEFGMHD FT ENVDFAHVVKEVGQEMAERIRDVTLRLYGEAARFAATKGIIIADTKFEFGLDDNGTLHL FT MDEVLTPDSSRFWPADGYRVGISPPSFDKQFVRDWLETQPWDKTPPAPRLPRDVLEKTA FT AKYREALDRLLA" FT misc_feature 1272148..1272942 FT /note="HMMPfam hit to PF01259, SAICAR synthetase, score FT 1.2e-118" FT misc_feature 1272727..1272753 FT /note="PS01058 SAICAR synthetase signature 2." FT CDS 1273062..1273241 FT /transl_table=11 FT /locus_tag="BPP1195" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1522" FT /protein_id="CAE36496.1" FT /translation="MIDIVPAPTPRGFHKSMTTHADHRIWQDVYCPMAVMGAVYLKRTV FT SGGVLVVSFKSLRP" FT CDS join(1273238..1273339,1273342..1273422) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1195A" FT /product="putative DNA-binding protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1523" FT /db_xref="PSEUDO:CAE36497.1" FT CDS 1273442..1273678 FT /transl_table=11 FT /locus_tag="BPP1196" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1524" FT /protein_id="CAE36498.1" FT /translation="MNYFVLLRYTRPSSHKGKREGSDEMLMMLPFLSGALAVWFGILGK FT RRPCFALWLVTLAVFAVGAHRYMTGPVPLPLAL" FT misc_feature join(1273517..1273570,1273589..1273648) FT /note="2 probable transmembrane helices predicted for FT BPP1196 by TMHMM2.0 at aa 36-53 and 60-79" FT CDS 1273686..1274165 FT /transl_table=11 FT /locus_tag="BPP1197" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1525" FT /protein_id="CAE36499.1" FT /translation="MIFLRNPGRGSRIVNTLVLLAVSLLLLSALAWQWLDGQAPCPLCL FT LQRAALVLIGVGLLLNVRMGPSPLHYAMVLAPALGGLAAAGWQLLSPEAGAAAPPWQGW FT AFLLFGAMLVYCTLMLAADRKWGDNALKKPVALPGALVMGLFLVAVLANAAGTVL" FT misc_feature 1273686..1273778 FT /note="Signal peptide predicted for BPP1197 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.976) with cleavage site FT probability 0.702 between residues 31 and 32" FT misc_feature join(1273722..1273790,1273818..1273871,1273890..1273958, FT 1273986..1274051,1274088..1274156) FT /note="5 probable transmembrane helices predicted for FT BPP1197 by TMHMM2.0 at aa 13-35, 45-62, 69-91, 101-122 and FT 135-157" FT CDS 1274388..1274828 FT /transl_table=11 FT /gene="purE" FT /locus_tag="BPP1198" FT /product="phosphoribosylaminoimidazole carboxylase FT catalytic subunit" FT /EC_number="4.1.1.21" FT /note="ortholog of Bordetella pertussis (BX470248) BP1526" FT /protein_id="CAE36500.1" FT /translation="MKHAVAMLQDFGVAHEARVISAHRMPQDMAEYGAAARARGLRAII FT AGAGGAAHLPGMMAALTEVPVFGVPVPSRYLRGEDSLLSIVQMPKGVPVATFAIGESGA FT ANAALHAIATLATTDDALHARLVAFRARQTDAARAMKVPPEA" FT misc_feature 1274388..1274819 FT /note="HMMPfam hit to PF00731, AIR carboxylase, score FT 1.8e-49" FT CDS 1274831..1276021 FT /transl_table=11 FT /gene="purK" FT /locus_tag="BPP1199" FT /product="phosphoribosylaminoimidazole carboxylase ATPase FT subunit" FT /EC_number="4.1.1.21" FT /note="ortholog of Bordetella pertussis (BX470248) BP1527" FT /protein_id="CAE36501.1" FT /translation="MTQSSTFDPIAPGDWLGLLGGGQLGRMFCHAAQSLGYKVAVLDPA FT DECPAGMVADLHIQAAYDDADGLARLAGRCRAVTTEFENVPADSLRALAARCRVSPAAD FT AVAVVQDRIAEKTFIAGQGIEVAPHAAIRARDDLLAAPQALFPGILKVARLGYDGKGQA FT RIASREEALAAFDEFGGVPCVLEALLPLEYEISVVIARGFDGASMVFPIARNVHRDGIL FT AVSSVTPGSADASHAARQVQATQAAQAIAQGLGYHGVLCVEFFVLGDGRLVVNEIAPRP FT HNSGHYTIDACVTSQFEQQARVMAGLPLGSADLLAPAVMLNILGDAWFEPGAHAPREPD FT WSAALAVPSAKLHLYGKREARRGRKMGHVTIVAATPEQARDDAARVARALGMAAPF" FT misc_feature 1274954..1275430 FT /note="HMMPfam hit to PF02222, ATP-grasp domain, score FT 3.4e-17" FT CDS 1276026..1277078 FT /transl_table=11 FT /locus_tag="BPP1200" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1528" FT /protein_id="CAE36502.1" FT /translation="MIPAPMNAADPAVAHAAACLLAGELAAFPTETVYGLGADAENPQA FT VARIYAAKGRPSNHPVIVHIAPEGDVDYWASDVPAAARQLIQAFWPGPLTLILKRAPHI FT GAAVSGGQDSIGIRCPSHPVAQALLRAFAAGKPNGQGGVAAPSANTFGHVSPTRAEHVR FT AEFPREVAAGMPVLDGGDAEVGIESTIIDLSRLDQGVGPVLLRPGHISAAQVAAVLGMP FT VARPDAAAPRASGTLKAHYAPRTPLELLDAAQLPRALAAAPAGVRQAVVALAPAPAGLP FT AEVHWRMAPADPARYAQALYALLRELDRQAYARILVEQPPRSGDWDAVNDRIGRAAAAF FT SLDTTDLPGT" FT misc_feature 1276077..1276649 FT /note="HMMPfam hit to PF01300, yrdC domain, score 1.6e-46" FT misc_feature 1276098..1276136 FT /note="PS01147 SUA5/yciO/yrdC family signature." FT misc_feature 1276653..1277051 FT /note="HMMPfam hit to PF03481, SUA5 domain, score 4.8e-09" FT CDS 1277215..1278237 FT /transl_table=11 FT /locus_tag="BPP1201" FT /product="putative extracellular solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1529" FT /protein_id="CAE36503.1" FT /translation="MKRHIAMAAGALALALGAQAAHAGPTLDAVKKKGFVQCGLTDGVA FT GFSATNSKGEWEGMDVDICRAVAAAVFGDAGKFKGTALSTQQRFTALQSGEVDVLLRTV FT TLTQTRDTSLGLAAVAASFYDGQGVLVRKALGVKSAKELDEATICVQPGTTTELNLADW FT FRANGIKFTPVVIDKVTEVVRAFESGRCDAFTDDASQLAAVRATQVAKPDDFEILPERF FT SKEPLGPMVRQGDENWLGIVRWTLFALMEAEEYGITQQNVDEMLKSKNPNVLRILGVTP FT GAGKNMGLDEKWAYNAIKAVGNYSQIFERNVGKDSRLGLQRGVNALWSQGGAMYPWPIR FT " FT misc_feature 1277215..1277283 FT /note="Signal peptide predicted for BPP1201 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 23 and 24" FT misc_feature 1277320..1278009 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 2.5e-35" FT CDS 1278329..1279165 FT /transl_table=11 FT /locus_tag="BPP1202" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1530" FT /protein_id="CAE36504.1" FT /translation="MTTVAPEDSPLFVAALARGLTLLAAFSEGRPAMTLPELAEATGLT FT KSAAQRFAHTLWTLGYLRKNPDSKKFSLSPQSLQLGMQYAQTSPLVLGGNPFLHSLNRT FT SQETCSLAEPDGLDMVYVARFATHKQMFVHMPVGMRIPMYCAAAGRAVLARLEPDRARR FT LLQQSPRAARTATTLTDLDALMAELAFTREHGYARSNGEYYPGDITISAAVLDNAGTPA FT GSVNISVPSSRWSFEEAQAVFGPQVLETAHAISASRTLGVMPPFYRMAPPSALNSD" FT misc_feature 1278539..1279099 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 1.1e-35" FT CDS 1279358..1280263 FT /transl_table=11 FT /locus_tag="BPP1203" FT /product="putative arginase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1531" FT /protein_id="CAE36505.1" FT /translation="MGVPARRPAGEAALACVLGIPFDCGTHPFRVGARQGPDAIREQSR FT LLRPYDLARRAGVDNPVEFLRLLDLGNVACVPGDPQASYPAIEQAVAQVLQAGAIPITM FT GGDGAVTLPQLRAVARRWPGVAVLHFDSHTDTYPIAGYNTATTFTRAAEEGLIDLSHSF FT HVGTRGNSFMGGVIEYGREVGYTVIPYDDFDRDQAGTLARLRGQLGDRPVYLCFDMDIF FT DPSCAPGVCTPEWGGLSPKEGLNLLRALSGLNFVAFDVNTVSPPQDVGGATAFLAASVM FT QEFCALAAAAVQAYPQGRPD" FT misc_feature 1279388..1280224 FT /note="HMMPfam hit to PF00491, Arginase family, score FT 2.1e-31" FT misc_feature 1279736..1279762 FT /note="PS00148 Arginase family signature 2." FT CDS 1280290..1281081 FT /transl_table=11 FT /locus_tag="BPP1204" FT /product="putative amino acid-binding periplasmic protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1532" FT /protein_id="CAE36506.1" FT /translation="MKIKAALGILATVGMLAHAGSAAARTLDEVRAAKSANVVTTASAP FT PHGFKNPASNQLEGIMVDVGAAVAKHLGVAMNLKDVPFSGLIPTLTSGRADVMSAPLFV FT TPERAKVIDFSAPVYEWGEGLVLREQNPDDIKRFEDLQGRRIGVLVDSVQFNMIKDMPD FT TKVSTYQDYSTLLADVRAGRIELGIIDPPSIIYQIRTKKIPGVKLATQYQPQKKWHVGL FT AVQKDNKALLDAVNAALAEMKRNGELAEIGRKWGVADLISK" FT misc_feature 1280290..1280361 FT /note="Signal peptide predicted for BPP1204 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.549 between residues 24 and 25" FT misc_feature 1280395..1281063 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 3.2e-53" FT CDS 1281104..1281796 FT /transl_table=11 FT /locus_tag="BPP1205" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /note="ortholog of Bordetella pertussis (BX470248) BP1533" FT /protein_id="CAE36507.1" FT /translation="MNLETLRMYLTPLAEGTMWTLALFFCSAVLAVALGLLVCLCRLSK FT SRVLSRGARLYIDIIRGTPLLLQLFYIYYGMPELGVVINAFVAGVLGLTLNFGAYLAEL FT FRSGIQSVDSGQYEAARALGLNKVDRLRRVVLPQAVRTVFPALGNYALVLIKETSLVAV FT ISVYELMRAGEMLAGATFQALTVYTMVGAIYFAMCSVLAHLFRRSEKRLTVPGYWSGAG FT ENHDISKA" FT misc_feature 1281104..1281196 FT /note="Signal peptide predicted for BPP1205 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.732) with cleavage site FT probability 0.599 between residues 31 and 32" FT misc_feature join(1281155..1281223,1281257..1281325,1281338..1281406, FT 1281539..1281607,1281650..1281718) FT /note="5 probable transmembrane helices predicted for FT BPP1205 by TMHMM2.0 at aa 18-40, 52-74, 79-101, 146-168 and FT 183-205" FT misc_feature 1281425..1281658 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 7e-17" FT misc_feature 1281428..1281514 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1281818..1282570 FT /transl_table=11 FT /locus_tag="BPP1206" FT /product="putative ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1534" FT /protein_id="CAE36508.1" FT /translation="MDACNQPAPVITLRGVSKWYGDFQVLRDLDLDVYQGERVILCGPS FT GSGKSTTIRLLNRLEEHEKGEIVVNGITLDGELRNIERIRADVGMVFQHFNLFPHLTVL FT ENCTLAPMRVKGLDEGEAARRAMQFLERVRIAQLADKYPGQLSGGQKQRVAIARALCMQ FT PRIMLFDEPTSALDPEMVKEVLDTMVELARDGMTMICVTHEMGFAREVGDRVVFMDGGS FT IVESDTPERFFSAPRSGRAQAFLGQILG" FT misc_feature 1281923..1282480 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.6e-65" FT misc_feature 1281944..1281967 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1282253..1282297 FT /note="PS00211 ABC transporters family signature." FT CDS join(1282699..1282929,1282929..1284257) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1207" FT /product="putative thiamine-pyrophosphate-requiring enzyme FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1535" FT /db_xref="PSEUDO:CAE36509.1" FT misc_feature join(1282699..1282929,1282929..1283210) FT /note="HMMPfam hit to PF02776, Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 4.1e-10" FT variation 1282930 FT /note="(A)1 in parapertussis; (A)2 in pertussis" FT misc_feature 1283706..1284248 FT /note="HMMPfam hit to PF02775, Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 2.1e-11" FT CDS 1284289..1284834 FT /transl_table=11 FT /locus_tag="BPP1208" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1536" FT /protein_id="CAE36510.1" FT /translation="MPPRNTRAARLVYPAALARLGSHGLLAAFQQGRSMKFADLRAGMV FT ITGGPLQVTEAEILEFARKFDPQWFHTDVQRAAEGRWGGLIASGWHTCALAMRMAVDAI FT LHDSESFGSPGLGEVSWRVPVRPGDTLTLHARVQGARVSASRNDLGIVNWVWVVDNQHG FT ETVLELDATSLFDLSGDS" FT misc_feature 1284289..1284369 FT /note="Signal peptide predicted for BPP1208 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.679) with cleavage site FT probability 0.659 between residues 27 and 28" FT misc_feature 1284394..1284768 FT /note="HMMPfam hit to PF01575, MaoC like domain, score FT 2.5e-06" FT CDS complement(1285065..1286321) FT /transl_table=11 FT /gene="gcdH" FT /locus_tag="BPP1209" FT /product="glutaryl-CoA dehydrogenase" FT /EC_number="1.3.99.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP1537" FT /protein_id="CAE36511.1" FT /translation="MPRPHIHDPDLSFSYLHWSTRMSSTPSFHWQDPLLLDQQLTEEER FT MVRDAAVAYSQDKLAPRVLEAFRHEKTDPAIFAEMGELGLLGATIPTEYGGAGLNYVCY FT GLIAREVERVDSGYRSMMSVQSSLVMVPINEFGSEAQKRKYLPKLAAGEWIGCFGLTEP FT NHGSDPGGMETRATKTPDGYKLTGNKMWITNSPIADVFVVWAKCVGGDFDGKIRGFILE FT KGMKGLSAPAIHGKVGLRASITGEIVMDEVEVSEEQMMPGVSGLKGPFTCLNSARYGIA FT WGALGAAEACWHTARQYTMDRKQFGRPLAANQLIQKKLADMQTEITLGLQGCLRLGRMK FT DESTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGT FT HDVHALILGRAQTGLQAFY" FT misc_feature complement(1285086..1285532) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 8.1e-46" FT misc_feature complement(1285155..1285214) FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT misc_feature complement(1285542..1285847) FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 3.9e-16" FT misc_feature complement(1285851..1286204) FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal domain, score 2.7e-20" FT CDS complement(1286338..1288101) FT /transl_table=11 FT /gene="ilvG" FT /locus_tag="BPP1210" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP1538" FT /protein_id="CAE36512.1" FT /translation="MQFYQLLCASEEHYAQRSHPRRIMTTANHSTPASRLGGHILVDQL FT AAHGVKHVFCVPGESYLAVLDGLHDASIDVTVCRQEGGAAMMADAHGKLTGEPGICMVT FT RGPGASNALAGVHIAKQDSTPMILFVGQIERGMREREAFQEMDYRAVFGTQAKWVTEID FT QVERIPELISRAFHVATSGRPGPVVIALPEDVLVETASVPDAPRYEVIDAAPAAGQMDQ FT LAQMLAQAKAPVAILGGSRWNAQAVQQFADFAQRHALPTAVSFRRQMLFPADHPCFIGD FT VGLGINPALLKRIGEADLVLMVGGRMSENPSQAYTLLDIPVPRQKLVHVHPDSAELGRV FT YRANLAINTSPAAFCAALAQANGPSQPAWADDTQAMRASYLQWSDPAAIRTPGALQLGE FT VMAFLEKTLPADAIMANGAGNYATWLHRFHRYTRYGTQLAPTSGSMGYGLPAAVGAKRI FT WPQKTVVCFAGDGCFLMHGQEFATAVQYDLPIVVVLIDNGMYGTIRMHQEKHYPGRISA FT TSLKNPDFAEYARAFGGHGERVETTEQFAPAFERALASGKPAILHCLIDPETITPSTTL FT EKIRAAALKAQ" FT misc_feature complement(1286413..1286934) FT /note="HMMPfam hit to PF02775, Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 7.4e-47" FT misc_feature complement(1286686..1286745) FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT misc_feature complement(1286980..1287456) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain, score 3.8e-05" FT misc_feature complement(1287490..1288005) FT /note="HMMPfam hit to PF02776, Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 5.5e-53" FT CDS 1288124..1288954 FT /transl_table=11 FT /locus_tag="BPP1211" FT /product="probable LysR-familyt ranscriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1539" FT /protein_id="CAE36513.1" FT /translation="MLRVALHQAPAFFGDRLPGQSPMRNGIPNLSALQAFEATARLGSF FT SRAAEELSLTHSAVYRQVASLEGRLGVQLFTRVRRRIVLTDHGAEYAGRIRHHLDQIEK FT DTFGLVSRTGMGRSIHIAVVPTLATTWLIPRLADFQRVQPDITVSLSVRTLPFQFKDQP FT FDGALGGMMHLHLYSRPDAWRQWYAANQYAYGPQAAGGPRYDLFTMMLAAVQAGLGVGL FT MPRFLVQDALDAGTLVMPVPQALSVSQGYYFGYPQRSERSGALKAFEVWLKSAV" FT misc_feature 1288211..1288390 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.1e-20" FT misc_feature 1288457..1288948 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 5.2e-08" FT CDS 1288992..1289924 FT /transl_table=11 FT /gene="xerD" FT /gene_synonym="xprb" FT /locus_tag="BPP1212" FT /product="integrase/recombinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1540" FT /protein_id="CAE36514.1" FT /translation="MSSSAPLASQADLDAFIDAVWLEDGLAANTLAAYRRDLSAFAQWL FT ENPACHPGLATGHSLREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLT FT PSDPCLTLVTAKQPPRLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSE FT LVSVKALDVSLNEGVVRVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADAL FT FVTARAEPMSRQAFWQLVKKYALAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLG FT HADISTTQIYTHVACERLKALHAAHHPRA" FT misc_feature 1289022..1289300 FT /note="HMMPfam hit to PF02899, Phage integrase, N-terminal FT SAM-like domain, score 6.7e-19" FT misc_feature 1289364..1289894 FT /note="HMMPfam hit to PF00589, Phage integrase family, FT score 1.4e-61" FT CDS 1289938..1290426 FT /transl_table=11 FT /locus_tag="BPP1213" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1541" FT /protein_id="CAE36515.1" FT /translation="MSKNRHVSETPATQLLRQRKVAFTEHTYDYVDHGGAGEAARQLGL FT DPHAVVKTLIMEDEGGHPLVVLMHGDREVSTKNLARQAGLKKVAPCQPEVAQRHSGYQV FT GGTSPFGTRKRMPVWVEASVLDFPQIYVNGGRRGYLVGIAPQALVDLLGARAVQVALP" FT CDS 1290495..1291124 FT /transl_table=11 FT /locus_tag="BPP1214" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1542" FT /protein_id="CAE36516.1" FT /translation="MTRPARYGGRLLSMETTMSKKLLMLVGDYAEDYETMVPFQTLLAV FT GHTVHAVCPDKKAGDTVATAIHDFEGAQTYSEKRGHNFTLNHDFAKVEPQHYDGLVIPG FT GRAPEYLRLDERVLDIVRHFDQAGKPIAAVCHGAQLLAAAGILKGRTCSAYPACAPEVR FT LAGGTYAEIGIDQAHTDGNLVTAPAWPAHPAWLAQFLAVLGTRISH" FT misc_feature 1290552..1291106 FT /note="HMMPfam hit to PF01965, ThiJ/PfpI family, score FT 1.4e-52" FT CDS 1291186..1291587 FT /transl_table=11 FT /locus_tag="BPP1215" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1543" FT /protein_id="CAE36517.1" FT /translation="MSCTNRVPGILMCEIFIRANQRSYSVQARSLRLHGVATSVRLEQL FT FWDVLEEIAARDGMRVTQLIERLYDELVQYRGEAANFTSFLRVCCLRYQVLQAEGRIPA FT DATVPIRSLDAQAVLRGLPANLYDSRPLG" FT CDS complement(1291594..1292373) FT /transl_table=11 FT /gene="pbpG" FT /locus_tag="BPP1216" FT /product="probable D-alanyl-D-alanine carboxypeptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1545" FT /protein_id="CAE36518.1" FT /translation="MPPAAASPAAEAAALRSSTAYVQDLETSTVLFAKNENVVRPIASI FT SKLMTALVVVDANLPMDEMIEITDDDVDTLKHTTSRLRVGTVLSRGDMLHLALMSSENR FT AAHALGRNYPGGMPAFVAAMNAKARSLGMLNTHFVEPTGLSSENVSSPRDLARMLRAAS FT QRPLIHRYSTDTEYEVEINNRTQTFRNTNLLVRKPDWDIKVSKTGFINEAGECLVMLAR FT INGRDMAIVLLDSQGKLSRIGDAVRIRRIVQNDVAML" FT misc_feature complement(1291600..1292361) FT /note="HMMPfam hit to PF00768, D-alanyl-D-alanine FT carboxypeptidase, score 6.4e-69" FT CDS 1292372..1292632 FT /transl_table=11 FT /locus_tag="BPP1217" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1545A" FT /protein_id="CAE36519.1" FT /translation="MAAVAAALARAVRVRARMVDLRVLPFLALAVFLLLADFFLAVLAD FT FLLEAVLAGAFLAEAFLACWDLQAADLALVLHGSALAACAA" FT misc_feature 1292432..1292500 FT /note="1 probable transmembrane helix predicted for BPP1217 FT by TMHMM2.0 at aa 21-43" FT tRNA complement(1293120..1293194) FT /note="tRNA Arg anticodon CCT, Cove score 58.52" FT CDS 1293441..1294643 FT /transl_table=11 FT /locus_tag="BPP1218" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1546" FT /protein_id="CAE36520.1" FT /translation="MSTSEKPSLRILFIGTGVVLLAMGVRATFGLFMQPMGLAHGWGRE FT VFSMAFALQNLVWGAACIGMGILADRYGSGRTIVLGAVLYALGMIGTRFATDEATLYLT FT AGVLVGLGQAGTTFPVILPVVARSVPAAYRSTAMGIASAGGSLGQFLVVPAGQQLITGL FT DWPGALWVLSLLVAVGAPLAYFLRGKPGVHGGVQQSLGAAVRQAMAHPSFHFLSWSYFV FT CGFHTAFITLHLPAYVVDAGMKASHGATAIALIGLCNVIGSFYAGKLGGVYSKRLLLAA FT IYGLRAFGMLLLLAVSLTPLVLYVFAGWMGLFWLGTVPLTQGLIGQIYGLRYAATLSGI FT AFLGHQVGSFIGVWMGGAVYARTGNYDLVWWTGVALAVVAALLCLPVREQPLAQPAAAR FT A" FT misc_feature 1293441..1293563 FT /note="Signal peptide predicted for BPP1218 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.773) with cleavage site FT probability 0.238 between residues 41 and 42" FT misc_feature join(1293465..1293533,1293576..1293644,1293663..1293716, FT 1293744..1293812,1293831..1293899,1293942..1293998, FT 1294083..1294151,1294179..1294247,1294284..1294352, FT 1294365..1294433,1294446..1294514,1294542..1294601) FT /note="12 probable transmembrane helices predicted for FT BPP1218 by TMHMM2.0 at aa 9-31, 46-68, 75-92, 102-124, FT 131-153, 168-186, 215-237, 247-269, 282-304, 309-331, FT 336-358 and 368-387" FT misc_feature 1294146..1294181 FT /note="PS00136 Serine proteases, subtilase family, aspartic FT acid active site." FT CDS 1294847..1297507 FT /transl_table=11 FT /locus_tag="BPP1219" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1547" FT /protein_id="CAE36521.1" FT /translation="MSDDFRTDFPSCTLRDLGELPAIDTLVLTVNNRLSRRLTLDLAAQ FT LRSERQVSELPRIMPLSAWLADCAAELAFDERYEVPAYRLSSFATQLVWREAIRLEEAD FT RALLDADQAARLALDADLLVDEWQAHVPAGAETDEYRGFSRWRARYRAMLGELDAEDAN FT QGYERVLEALRQGALRAPRHVALAGFVDISPRFARLLRALADGGADVVAWRDAVREPAW FT PQRFEAADRGAEWRAAARWAADRLRADPRGRYAIVSPQLEAEAPFARRVLGQALAGQDA FT PLPFNVAVGRALDEWPAVRAALAWLALLAEVAARGAAEPALFGAALLAGHCAGDLQEGP FT RHAALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMAIWQAGQRSDTCDAWAPRL FT KAALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGRLDGRAAVRLLASAARAG FT SFQPQRDPSARLDVLGLLEAEGGAWDGIWVLGLTGDVLPASPKPNPLLPLAVLRQVGAP FT RATPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPLIARAAPADWQPGADAQ FT AAALEQEILDDSQGPPLEAERQSRGGLDVLDTQARNPLWAFVRHRLGGRAMAPYADAAT FT VSVRGQFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAARTELAGYPAALRE FT LECARATAVLANWFDSEAQRQPFEVAQIEQEHSWQRGALALKVRLDRMDRLADGRALIV FT DYKTGAAPGRPESDWARARPVNLQLPFYASVLADGADTEVAGLMLAQIHARQVSAQGLA FT ADDLGIEGVTPVEQSKAFEGQPWPRILQRWRAAVEMLADEYANGYAANVALRQDDLKFC FT DAMPFLRLHLDDEDA" FT CDS 1297520..1300924 FT /transl_table=11 FT /locus_tag="BPP1220" FT /product="putative nuclease/helicase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1548" FT /protein_id="CAE36522.1" FT /translation="MTEPERLPHDHAARRQALDPSRSFLVQAPAGSGKTELLTDRILAL FT LATVTRPEEIVAITFTRKAASEMHARVLHKLSLGAGEPPRSAHERRSWELARAALARDQ FT EQGWHLLDHPARLAIRTIDSFCAGLVRGMPWLSELGGMPDIADDARAHYEAAARATLEL FT ADEHDAVRALLAHLDVDVQAAKEAIAAMLGQRDQWMPLLQFGLDRDGLEASLAEALEHE FT LDSLCGQLPRGWSQALCGPARLAAAALAGSGDARLAALQDWDAPLPPMAEALDQWRALA FT HLLLTGTGALRSPKGVNKNLGFPAGCDHKEPFTAWLAACDGGAPWVRALAAVRDMPDAY FT FSDAQWDVLSAQLTTLALSVAQLRVQFARAGEVDFIEIAQRAAYALGSGDDPGELLLKL FT DASIRHLLIDEFQDTSQGQIDLLATLTAGWQDGDGRTLFLVGDPMQSIYRFRKAEVGLF FT LQVAEQGVGQIRPGFLQLTDNFRSQGGVVDWVNRVFAQLLPRANDADSGAIAYSPSTAF FT HETAPGEAVRFHPAWECGDAASAERQAEDIVVGLVRAALAEHEGSRHPVAILVRARSHL FT GSLTRRLAQEGIPCRAVELVPLGLRPVVADLVQLARALAHPADRLAWLSVLRAPWCGLT FT LTSLQRLFGADQQTPVPTLLERALRGAARSEGGQGSLFDAPAPGCLAEQALAPDEYRRL FT RAVAAILLDRANDAGLLPLAAWLEQLWRRLGGPGLYPGSSAASDAESLFQLIERLAPHG FT GLDAGLLDTAVARLFAAPQATGEQGTVEIMTMHKSKGLQFDTVILYGLHRAPRGDQAPL FT VRFEQSGGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDRLLYVAATRARQRLHL FT VAHVAVDAASGQARTPASASLLGRLWLHLPVPQPPDVAQDQAAATGEQPALVGEPLRRL FT AGAGLASLAARTLPREAAAGAYGGGQGAEHPSWQLEAGYDAAVGTLAHAWLARIGGDGP FT QHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDERGRWLLGQARAR FT REWPLIDAAGRVSVIDLALSTEDGWLIVDYKTGRPHEHETPEQFAIRMRQRHGEQLMRY FT CAQVTALDGRPARAALYFPRARAWIDL" FT misc_feature 1297547..1299640 FT /note="HMMPfam hit to PF00580, UvrD/REP helicase, score FT 4.3e-35" FT misc_feature 1297601..1297624 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1299215..1299250 FT /note="PS00962 Ribosomal protein S2 signature 1." FT CDS 1301628..1303754 FT /transl_table=11 FT /gene="dnaX" FT /gene_synonym="dnaZ" FT /gene_synonym="dnazX" FT /locus_tag="BPP1221" FT /product="DNA polymerase III subunit Tau" FT /EC_number="2.7.7.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP1549" FT /protein_id="CAE36523.1" FT /translation="MTYLVLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTG FT TRGVGKTTLSRILAKSLNCENGITSKPCGQCRACTEIDAGRFVDYLELDAASNRGVEEM FT TQLLEQAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIP FT VTVLSRCLQFNLKQMPPDAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSLTD FT QAIAYSAGNLSEEAVRGMLGTIDQRHLVRLLDALASGDAAGVLAVADELAVRGLSYAGA FT LADLAVLLSRVAIEQRVRGALPQDDPLTEDITRLAAALHPDAVQLFYSVAVHSRGELTL FT SPDEYAGFVMACLRMLALNGEAGPATAVQAPRADTTPRAAAPAAAAPAETRPEPTPALA FT PQAAAAPRAVARSESKPQPAPEPEPEPEPEPEPEPEPEPEPEPEPASRPAATPVAATPP FT AVAEPEPVAAPTVQARAAEPAPVPPWEDLPEAVAAPAPAQPAAAPAPVVADDDGPPAWV FT DEAIPDEAGGGFAPEHSFTADPDDEFETLAPAPAAMPAPRAPTPRRESGGRGRAARSRL FT ADMSPAGWPELVARLPVTGLAAELARQSEWAGVQGDAVLLRVAVRTLAESESRVRLQTV FT LCEHFGQGLRLEIEVGVTGDGTAHAVAQIERAARQQAAEDAVAVDPFVQALVADFGGRV FT VPGSIRHVDNPPAA" FT misc_feature 1301745..1302317 FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA), score 0.00013" FT misc_feature 1301760..1301783 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1303801..1304127 FT /transl_table=11 FT /locus_tag="BPP1222" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1550" FT /protein_id="CAE36524.1" FT /translation="MMKGQLAGLMRQAQQMQENMKKAQDALAEIQVEGAAGGGLVKVTM FT TCRHDVKRVAIDPSLLGEDKDMLEDLVAAAFNDALRKAEATSQEKMASVTAGMPLPPGM FT KLPF" FT misc_feature 1303828..1304103 FT /note="HMMPfam hit to PF02575, Uncharacterized BCR, YbaB FT family COG0718, score 1.2e-45" FT CDS 1304135..1304785 FT /transl_table=11 FT /gene="recR" FT /locus_tag="BPP1223" FT /product="recombination protein RecR" FT /note="ortholog of Bordetella pertussis (BX470248) BP1551" FT /protein_id="CAE36525.1" FT /translation="MAARRAAGRAAVCAMDPQLPEPEPLIALIEALRRLPGVGVRSARR FT MAYHLLQHDLQGADMLGRALSGAVQHLRHCARCNSFTEDEVCATCANPKRDPGLLCIVE FT TPADQNMIESSHGYRGLYYVLMGRIAPLEGVGPRELDFQRVIERACDGVVQEVILATNF FT TAEGETTAHFLGDALSERGLKVTRLARGVPAGSELEYVDAGTIAWALMERRST" FT misc_feature 1304300..1304425 FT /note="HMMPfam hit to PF02132, RecR protein, score 8.5e-11" FT misc_feature 1304426..1304707 FT /note="HMMPfam hit to PF01751, Toprim domain, score FT 1.9e-08" FT CDS 1304860..1306110 FT /transl_table=11 FT /locus_tag="BPP1224" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3733 SWALL:Q9HXQ9 (EMBL:AE004792) (409 aa) fasta FT scores: E(): 1.1e-42, 59.36% id in 411 aa, and to Ralstonia FT solanacearum hypothetical protein Rsc1197 or Rs05729 FT SWALL:Q8Y047 (EMBL:AL646063) (405 aa) fasta scores: E(): FT 5.1e-39, 56.69% id in 411 aa" FT /protein_id="CAE36526.1" FT /translation="MSALKGLKVLELGTLIAGPFAARMFGEFGAEVIKVETPHGPDGTG FT GGDPIRSWRHLHRGDSLWWTVQARNKQSIALNLKDPRAQEIARRLALEADVVVENYRPG FT VLEKWGLGYEQLRAINPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGLRYVSGHPDRP FT PVRVGISIADSLAALHGVIGALMALRHRDATGGRWNGATGEQCQAGQGQMVDVALYESV FT FNMMESLVPEYDVAGVVRERTGGALPGIVPSNTYTTRDGQNIVIAGNGDAIFHRLMLAI FT GRSDLAHDPQLERNDGRARRATEIDSAIQRWCDTHTIEQALATLRAADVPVGKIYSVAD FT MFTDPQFLARGMIEQHHFPDGSPVKLPAVVPKLSETPGGTRWLGPRLGEHTEEVLRSLG FT YDAAAIAELAQTGAIGR" FT misc_feature 1305079..1305690 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.6e-52" FT CDS 1306216..1307253 FT /transl_table=11 FT /locus_tag="BPP1225" FT /product="putative exported protein" FT /note="Similar to Ralstonia solanacearum probable signal FT peptide protein Rsc1198 or Rs05730 SWALL:Q8Y046 FT (EMBL:AL646063) (349 aa) fasta scores: E(): 4.3e-70, 61.51% FT id in 330 aa, and to Brucella melitensis taurine-binding FT periplasmic protein precursor Bmeii0963 SWALL:Q8YBD7 FT (EMBL:AE009729) (320 aa) fasta scores: E(): 4.5e-48, 46.92% FT id in 309 aa" FT /protein_id="CAE36527.1" FT /translation="MSVTRRELLKLAGAAGAMSLAPAIVRAQKLEKAKVQIAVGGKPLI FT YYLPLTIAEVKGFFKDEGLDVSIADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQ FT FYRAFALQGRAPMIGVGVSKKHLPGYKGPADLKGRKIGVTAPGSSTNMVVNFFLAKHGL FT KASDVSFIGVGAGAGAVTALRSGQIDAISNTDPVVSMLETSGDIQIIVDTRTLKDTKEI FT FGGNMPACLYAPQAFVDANPNTAQALTNAIVRADKWIQKAGADEIAKAVPEGYLLGDPA FT VYKAAIGKSMEGLSPDGVIPEDGAATALKALAAFVPDFDAAKVDPAKAWTNEYTRRANE FT KYPNG" FT misc_feature 1306216..1306296 FT /note="Signal peptide predicted for BPP1225 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.988) with cleavage site FT probability 0.893 between residues 27 and 28" FT CDS 1307246..1308055 FT /transl_table=11 FT /locus_tag="BPP1226" FT /product="probable ATP-binding ABC transporter protein" FT /note="Similar to Ralstonia solanacearum probable FT ATP-binding ABC transporter protein Rsc1199 or Rs02665 FT SWALL:Q8Y045 (EMBL:AL646063) (270 aa) fasta scores: E(): FT 5.1e-70, 78.43% id in 269 aa, and to Brucella melitensis FT taurine transport ATP-binding protein TauB or Bmeii0961 FT SWALL:Q8YBD9 (EMBL:AE009729) (281 aa) fasta scores: E(): FT 1.7e-48, 55.55% id in 261 aa" FT /protein_id="CAE36528.1" FT /translation="MAEAALSLEGITCTFIAREDRSRRYTAVQDTSLAVAPGEFVSVVG FT PTGCGKSTLLNVGAGLLAPSSGTVRVFGQALAGINERAGYMFQGEALLPWRSALENVVA FT GLDFAGVPRAEADERGREWMRRVGLGGFETRYPHQMSGGMRKRVMLAQTLIRDPDIILM FT DEPFSALDIQTRQLMENEVLDLWMAKRKAVLFITHDLDEAIAMSDRVIVLSAGPGTHPI FT GEFAIDLPRPRDVAEVRTHPRFVELHAAIWGVLREEVLKGYAQQKRA" FT misc_feature 1307357..1307893 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.4e-57" FT misc_feature 1307378..1307401 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1307663..1307707 FT /note="PS00211 ABC transporters family signature." FT CDS 1308059..1308853 FT /transl_table=11 FT /locus_tag="BPP1227" FT /product="probable transmembrane permease ABC transporter FT protein" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane permease ABC transporter protein Rsc1200 or FT Rs02669 SWALL:Q8Y044 (EMBL:AL646063) (263 aa) fasta scores: FT E(): 1.7e-80, 81.53% id in 260 aa, and to Brucella FT melitensis taurine transport permease protein TauC or FT Bmeii0962 SWALL:Q8YBD8 (EMBL:AE009729) (263 aa) fasta FT scores: E(): 1.5e-55, 61.84% id in 249 aa" FT /protein_id="CAE36529.1" FT /translation="MSKLIKPGSLSLRFWQLLLFVVILLVWHAASRDPKVAFFFGEPLK FT VWGRIWAWFVSNGDIYGHLWVTLSETVLAFFIGTVSGLGFGLWLGLSPGTSAILDPYIK FT AANSMPRVILAPIFGMWFGLGIWSKVALAVTLVFFIVFFNVYQGVREVSPTLLDNARML FT GARRRQLLRHVYLPSATSWVFSSLHTSVGLAFVGAVVGEYLGSASGVGYLILQAEGTFD FT VNTVFAGIVVLTAFALLLDYVVGMGEKRLMKWQPKSGETEKL" FT misc_feature 1308059..1308154 FT /note="Signal peptide predicted for BPP1227 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.932) with cleavage site FT probability 0.726 between residues 32 and 33" FT misc_feature join(1308092..1308151,1308194..1308253,1308272..1308331, FT 1308428..1308496,1308635..1308703,1308731..1308799) FT /note="6 probable transmembrane helices predicted for FT BPP1227 by TMHMM2.0 at aa 12-31, 46-65, 72-91, 124-146, FT 193-215 and 225-247" FT misc_feature 1308500..1308715 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.015" FT CDS complement(1308895..1309857) FT /transl_table=11 FT /gene="talB" FT /locus_tag="BPP1228" FT /product="transaldolase B" FT /EC_number="2.2.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1451" FT /protein_id="CAE36530.1" FT /translation="MPSQLEALRRHTVVVADTGDFEAMRALRPTDATTNPSLILKAVQQ FT EAYRPLLVQTARAHQGASPAEITDRLLVAFGRQILDIVPGRVSTEVDARLSFDTRATVE FT RARGLIALYQAAGVPRERVLIKIASTWEGIQAARVLQAEGIRCNLTLLFCLPQAAACAD FT AGVQLISPFVGRIYDWHKKNAGAEWVEDARRGANDPGVQSVSRIYRYYKRFGIETEIMG FT ASFRNVDQILALAGCDLLTISPELLTRLSQTEGEVPAALSPQAGHDDADAVRLDGGEVA FT FRTQLNEDAMASEKLSEGIRLFVADARKLDALIESHGAA" FT misc_feature complement(1308916..1309821) FT /note="HMMPfam hit to PF00923, Transaldolase, score FT 1.3e-126" FT misc_feature complement(1309438..1309491) FT /note="PS00958 Transaldolase active site." FT misc_feature complement(1309741..1309767) FT /note="PS01054 Transaldolase signature 1." FT CDS 1310195..1311238 FT /transl_table=11 FT /gene="carA" FT /gene_synonym="pyrA" FT /locus_tag="BPP1229" FT /product="carbamoyl-phosphate synthase small chain" FT /EC_number="6.3.5.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP1452" FT /protein_id="CAE36531.1" FT /translation="MAEVVFNTSMTGYQEILTDPSYAGQTVMLTYPHIGNTGVNPEDVE FT ANRVYAAGLVVRDCPARVSNFRATQSLPEYLNAQGIVAIAGIDTRKLTRILRESGAQGS FT CILVGEDAERAVELARGFPGMSGQDLAKVVSIKERADWTQGTWELGSGYTQPAQDRFHV FT VAYDYGVKSNILRLLADRGCRVTLVPAQTTAEEAFKLQPDGVFLSNGPGDPEPCDYAVD FT ATRAFLERKLPVFGICLGHQLMGLALGGKTVKMKTGHHGANHPVQDVQSGRVFITSQNH FT GFAVDAATLPANTRVTHISLFDGTLQGFELTDRPAFCFQGHPEASPGPHDIIVLFDKFI FT SLMAGQK" FT misc_feature 1310195..1310563 FT /note="HMMPfam hit to PF00988, Carbamoyl-phosphate synthase FT small chain, CPSase domain, score 1.8e-59" FT misc_feature 1310684..1311220 FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I, score 2e-66" FT misc_feature 1310891..1310926 FT /note="PS00442 Glutamine amidotransferases class-I active FT site." FT misc_feature 1310927..1310950 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1311249..1314491 FT /transl_table=11 FT /gene="carB" FT /gene_synonym="pyrA" FT /locus_tag="BPP1230" FT /product="carbamoyl-phosphate synthase large chain" FT /EC_number="6.3.5.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP1453" FT /protein_id="CAE36532.1" FT /translation="MPKRTDLKSILIIGAGPIIIGQACEFDYSGAQACKALKAEGYRTI FT LVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLPTMGGQTALNCALDLAH FT HGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGVAHSMDEAWEVQRRIA FT ADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPTKELLIEESLLGWKE FT FEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASIAVLRE FT IGVDTGGSNVQFAVNPQNGRMIVIEMNPRVSRSSALASKATGFPIAKVAARLAVGYTLD FT ELRNEITGGATPASFEPTIDYVVTKVPRFAFEKFPQADARLTTQMKSVGEVMAMGRTFQ FT ESFQKALRGLEVGVDGLNQKTTDREKLQIELGEPGPERIWYVGDAFAQGFTLDEVHGLT FT RIDPWFLAQIKEIVDIELALEQKTLADLDYAILWELKRCGFSDRRLAFLLDSSESEVRK FT LRHQLNVRPVYKRVDTCAAEFATNTAYMYSTYEEECESQPTDRKKIIVLGGGPNRIGQG FT IEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKEN FT PVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNR FT TARTEAEALAHASEIGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLL FT DRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAGVHSGDSACSLPPYSLSAEVIAEIKR FT QTTMMAKALNVSGLMNVQFAIQGGDVYVLEVNPRASRTVPYVSKATGLQLAKIAARAMA FT GRTLADQGITREVVPPYFSVKEAVFPFVKFPGVDTILGPEMKSTGEVMGVGNSFGEAFV FT KSQLAAGVRLPDSGTVFISVRNQDKPRAVEVARGLHNLGFKLVATRGTAAEIEAAGIPV FT QVVNKVTEGRPHIVDMVKNGEVSLVINTVEERRNAIADSRTIRTQALANRITFFTTIAG FT VRAAVEGMQFMRQGLGLQVYPLQELHAGLTAQ" FT misc_feature 1311264..1311626 FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain, score 8.8e-55" FT misc_feature 1311630..1312361 FT /note="HMMPfam hit to PF02786, Carbamoyl-phosphate synthase FT L chain, ATP binding domain, score 1.9e-115" FT misc_feature 1311759..1311803 FT /note="PS00866 Carbamoyl-phosphate synthase subdomain FT signature 1." FT misc_feature 1312158..1312181 FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT misc_feature 1312524..1312895 FT /note="HMMPfam hit to PF02787, Carbamoyl-phosphate FT synthetase large chain, oligomerisation domain, score FT 3.4e-64" FT misc_feature 1312923..1313267 FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain, score 2.6e-22" FT misc_feature 1313271..1313942 FT /note="HMMPfam hit to PF02786, Carbamoyl-phosphate synthase FT L chain, ATP binding domain, score 7.8e-26" FT misc_feature 1313379..1313423 FT /note="PS00866 Carbamoyl-phosphate synthase subdomain FT signature 1." FT misc_feature 1313766..1313789 FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT misc_feature 1314084..1314380 FT /note="HMMPfam hit to PF02142, MGS-like domain, score FT 1.4e-31" FT repeat_region 1314550..1314562 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT repeat_region complement(1314550..1315856) FT CDS complement(1314553..1315773) FT /transl_table=11 FT /locus_tag="BPP1231" FT /product="transposase" FT /note="transposase for IS1001 element" FT /protein_id="CAE36533.1" FT /translation="MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCE FT QCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVT FT DRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFA FT LHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYEL FT EIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNR FT DNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGI FT AALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRA FT AFPGNAR" FT misc_feature complement(1314694..1315683) FT /note="HMMPfam hit to PF01610, Transposase, score 7.9e-128" FT repeat_region complement(1315844..1315856) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT CDS 1315921..1316337 FT /transl_table=11 FT /locus_tag="BPP1232" FT /product="conserved hypothetical protein" FT /protein_id="CAE36534.1" FT /translation="MLHVLGSLYLDERELDFDMIRAQGAGGQNVNKVSSAIHLRFDVRA FT SSLPDSVKETVLALADRRISSDGVIVIKAQTHRSQEKNRADAVERLLALLREALRPVRP FT RRATRPTLGSQRRRVQRKVQHGETKRLRGRVRDD" FT misc_feature 1315921..1316316 FT /note="HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase FT domain, score 1.8e-13" FT misc_feature 1315981..1316031 FT /note="PS00745 Prokaryotic-type class I peptide chain FT release factors signature." FT CDS join(1316330..1316404,1316408..1316680) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1233" FT /product="putative membrane protein (pseudogene)" FT misc_feature join(1316330..1316404,1316408..1316419) FT /note="Signal peptide predicted for BPP1233 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.879) with cleavage site FT probability 0.876 between residues 29 and 30" FT misc_feature join(1316366..1316419,1316456..1316509,1316528..1316596) FT /note="3 probable transmembrane helices predicted for FT BPP1233 by TMHMM2.0 at aa 13-30, 43-60 and 67-89" FT CDS 1316680..1319301 FT /transl_table=11 FT /gene="bipA" FT /locus_tag="BPP1234" FT /product="putative outer membrane ligand binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1112" FT /protein_id="CAE36536.1" FT /translation="MAQEEAGQDAAWTRKLAAQAESLARRQAERQPGARVDGDYLKREA FT QAQVNDVLRDGVNLARKSGLPFLRNLQGGLSHDFESGRTSLQLNTIDEVYRAGRNTGLL FT QLGAHNQNDRPTANAGAVYRREVNDALMVGANGFLDYEFGKQHLRGSVGLEVIAPEFSL FT YGNVYAPLSDWKGAKRNNRREEKPASGMDVGVGYRPAFAPGLSLSATHFRWNGDEVDYF FT DNGRTQAGAKGFKVGVEYRPVSLVSVGLEQTKVIGGGRETRMQLGLNINLSEPLSKQLR FT RDASGTPAFSPDARRHALVERENRIVLNTRRKEIILPLVVSKVSTLQADGRVTVIGVTQ FT PFATVTVRMPDGMTGTATADASGRFAYTSAGDQPSGVLALRARNAEGDSSREVTYRYVD FT EVVLGDLQVAVMALVPLPADRALEVRGKTEPKVDVKVSFPNGESVLAKADAKGLFTVRS FT TRKVTQGKVLVQATHPQTRKEARAVADYLPPATLAPTIDAVTAQADTGRVTVTGQAEPG FT AQVDVHFPDGTAKTVDAGADGAYAATSDGDMVAGDIHVQATDKAGNRSPEGTRAYVDTV FT DKTPSAAPTIVRVTTDRSSGVVTVAGTADPDNDVTVQFPDGGRKTVKAGKDGSYSVTSD FT NDIFSGIIQVSARNPAGNASPEVRQDYRDEFVPANAITNIETNSRNGIVTVSGKTSPDA FT TVVVSFPGGDEARTRAKGDGTFSVSSPMDIPRGVVSLSTEVNGVQTVVATRTYEDKFTK FT GGLDFTAFLPYTPKFNGVSTSDTSAVLLSIPRYFYSGGAPVAKVMPPEADGSEFAKRAA FT AAMRAQVTPGRDSSEYDVRVSWPAGTFTPADVGQRADLAVKVFDKGTGKYMLLLAPVNF FT PY" FT misc_feature 1317940..1317963 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1318420..1318470 FT /note="PS00237 G-protein coupled receptors signature." FT CDS join(1319402..1320004,1320004..1321527) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1235" FT /product="putative competence protein (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1113" FT /db_xref="PSEUDO:CAE36537.1" FT misc_feature join(1319459..1319527,1319555..1319623,1320029..1320082, FT 1320140..1320208,1320242..1320310,1320353..1320421, FT 1320440..1320508) FT /note="7 probable transmembrane helices predicted for FT BPP1235 by TMHMM2.0 at aa 20-42, 52-74, 210-227, 247-269, FT 281-303, 318-340 and 347-369" FT misc_feature 1320697..1321308 FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily, score 0.0028" FT CDS 1321527..1322495 FT /transl_table=11 FT /locus_tag="BPP1236" FT /product="probable hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1115" FT /protein_id="CAE36538.1" FT /translation="MGHRRPSGPRRGDIMQEPRLDFVTCASPTGFHRMAYWEWGDPLND FT RVLVCVHGLTRTGRDFDHLARRLAGQWRVVCPDVAGRGKSDWLSNPALYAVPQYVSDMA FT TLIARVRPATLAWVGTSMGGLIGLGLAGAATMMRLARAMRPRPDGLPAQADDLRLHRLV FT LNDVGPRLNVEALQRIAGNVAAQDSYPTFEAAVAAMRQISTTFGPHTDAQWDELARHIY FT VRQGGGWVRHFDPALAVPLGAQVAQAFEAGERILWQAYDSLDCPVLIVRGQDSDLLSAA FT TAAEMLGRNPRARLHEVPGVGHAPTLMTPEQIEPIARFLQE" FT misc_feature 1321740..1322486 FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 0.00038" FT misc_feature 1321869..1321937 FT /note="1 probable transmembrane helix predicted for BPP1236 FT by TMHMM2.0 at aa 115-137" FT CDS 1322565..1323410 FT /transl_table=11 FT /locus_tag="BPP1237" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1116" FT /protein_id="CAE36539.1" FT /translation="MNIAAPNVDLHCHSTVSDGSMPPAAVARRAHANGVDVWALTDHDE FT IGGVAEAAQAAAGLGMRFVAGVEISVTWAGLTVHIVGLRVDPANEALVQGLRDTRAGRA FT ARAVQIGERLAGLGMPGAYEGALPFAGNPELISRTHFARFLVEAGYCPDVQTVFNKYLG FT DDCPGHVPMQWASLAEAVGWIRGAGGCAVIAHPGRYKYSPMQFDALYDEFLQLGGTGIE FT VVTGSHTSEEARRYAEVARRHGFLASRGSDFHSPTESRVDLGRLPPLPPDLKPVWHDWF FT " FT misc_feature 1322586..1322777 FT /note="HMMPfam hit to PF02231, PHP domain N-terminal FT region, score 1.7e-18" FT misc_feature 1323087..1323350 FT /note="HMMPfam hit to PF02811, PHP domain C-terminal FT region, score 0.55" FT CDS 1323478..1324032 FT /transl_table=11 FT /gene="greB" FT /locus_tag="BPP1238" FT /product="transcription elongation factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1117" FT /protein_id="CAE36540.1" FT /translation="MNKAFVKESDRDDEDDLPEAQALPAGTRNYMTPQGYARLRDELSH FT LMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFLTKRLDIAEVVDPAA FT QPNRDQVFFGATVLYMDRAGEERTVTIVGVDEAEPLAGKISWISPVARALTKAHEGDTV FT TLRTPGGVEELEILEVRYPDA" FT misc_feature 1323553..1323774 FT /note="HMMPfam hit to PF03449, Prokaryotic transcription FT elongation factor, GreA/GreB, N-terminal domain, score FT 6.6e-32" FT misc_feature 1323571..1323696 FT /note="PS00829 Prokaryotic transcription elongation factors FT signature 1." FT misc_feature 1323790..1324020 FT /note="HMMPfam hit to PF01272, Prokaryotic transcription FT elongation factor, GreA/GreB, C-terminal domain, score FT 2.3e-20" FT CDS complement(join(1324277..1325008,1325012..1325305)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1239" FT /product="putative exported protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2671" FT /db_xref="PSEUDO:CAE36541.1" FT misc_feature complement(join(1324331..1325008,1325012..1325209)) FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 1.3e-82" FT variation 1325009..1325011 FT /note="In-frame TGA stop codon in parapertussis; TGG in FT pertussis" FT misc_feature complement(1325234..1325305) FT /note="Signal peptide predicted for BPP1239 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 24 and 25" FT CDS complement(1325385..1326683) FT /transl_table=11 FT /locus_tag="BPP1240" FT /product="putative membrane permease" FT /note="ortholog of Bordetella pertussis (BX470248) BP2670" FT /protein_id="CAE36542.1" FT /translation="MIAALLFAVFITLMLIGVPVGVALGLGGTVAIVLSNLDVSWFGLL FT AVPQNFYAGLAKYPLLAIPMFVLVGSIFDRSGVARRLVDFAVALVGRGPGMLPLVSIAV FT AMFLSGISGSGPACAAAVGAVMIAAMSRAGYPAPYSAAVVAAGAATDILIPPSVAFIIY FT SVLVPGASVPALFAAGMVPGILAGVALIIPAVWLARRHGMGAREAHLPRPPLWASLREA FT SWGLAAPVLILGGMRMGWFTPTEAAVVAVFYGLFVGMCIHRTIKVRDLFVILREAAELS FT AVIMLVVTLAGIFAWALSTLSVIDPITHAIVNSGLGEWGVLALLIVLLMTVGMFLDGIS FT IFLIFVPLLMPIANAYGWDPVWFGVILTLKVALGQFTPPLAVNLMVSCRIARVPMESTV FT GWVVWLLGGMFLVLVAVLIFPQLALWLPHRLGY" FT misc_feature complement(join(1325412..1325477,1325538..1325603, FT 1325649..1325714,1325778..1325843,1325889..1325945, FT 1326096..1326161,1326192..1326257,1326279..1326344, FT 1326360..1326425,1326465..1326530,1326603..1326668)) FT /note="11 probable transmembrane helices predicted for FT BPP1240 by TMHMM2.0 at aa 5-27, 51-73, 86-108, 113-135, FT 142-164, 174-196, 246-265, 280-302, 323-345, 360-382 and FT 402-424" FT misc_feature complement(1325799..1326278) FT /note="HMMPfam hit to PF00597, DedA family, score 1.7e-08" FT misc_feature complement(1326609..1326683) FT /note="Signal peptide predicted for BPP1240 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.939) with cleavage site FT probability 0.469 between residues 25 and 26" FT CDS complement(1326680..1327261) FT /transl_table=11 FT /locus_tag="BPP1241" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2669" FT /protein_id="CAE36543.1" FT /translation="MQPLILPALCSTLLPMHRPDASDEPVEPIIPPEADPAVKVPLALE FT DWLAVILLAALAIITFLNVLVRYLTDQSFAWTEEISVFLLIVLTMVGASMAFVRNHHIR FT IEILANNGSPRRQYLMALTAHSLVVFFFALLTVLSARLVYDEFRYEETSPAIGVPTWWY FT SVWMPLLAAVITLRVAGAARRLIARHKAET" FT misc_feature complement(join(1326719..1326784,1326830..1326895, FT 1326959..1327024,1327055..1327120)) FT /note="4 probable transmembrane helices predicted for FT BPP1241 by TMHMM2.0 at aa 47-69, 79-101, 122-144 and FT 159-181" FT CDS 1327574..1331620 FT /transl_table=11 FT /gene="purL" FT /locus_tag="BPP1242" FT /product="phosphoribosylformylglycinamidine synthase" FT /EC_number="6.3.5.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP2668" FT /protein_id="CAE36544.1" FT /translation="MSLVQHLPGSSVLSAFRRERLLAQLKKAGLPVADISARYEHFIHT FT DSALPAEQQARLAQLLDYGTPAAEAPAKSLELLVIPRLGTMSPWASKATDIAHNCGLDA FT VRRIERGVRYALTPERGLLGAKSFDAGMLARAAACLHDRMTETVVDGTFDGQALFETLA FT GKPMRSVAVQAEGRAALEQANVALGLALSEDEIDYLAQSFGDLGRDPTDVELMMFAQAN FT SEHCRHKIFNAQWVIDGQAQSNTLFGMIRATHKAQPAGTVVAYSDNAAIMEGGPAQRFQ FT AGVPGVAGEGAQAARYVRRDTTVHTLMKVETHNHPTAIAPFPGAATGAGGEIRDEGATG FT RGSKPKAGLTGFTVSHLRFDDALQPWEDDHHGLPERIASPLSIMIDGPIGGAAFNNEFG FT RPNLLGYFRAFEQTAGGTRWGYHKPIMIAGGLGSIDAGLTHKEVIPPGALLIQLGGPGL FT RIGMGGGAASSISMGSNSAELDFDSVQRGNPELERRAQEVIDRCWQQGEHNPIVAIHDV FT GAGGLSNAFPELVNDAGRGAIFDLRRVPLEESGMSPAEIWSNESQERYVLSILPQDLER FT FDAIARRERCPYAVVGVATEERQLRVVDGEGLPGLDTIRAQGENEVRPVDVPIDVILGK FT PPRMTRDVQRLPGVSEPLDLAGLDLTEAAYRVLRHPTVANKSFLITIGDRTVGGLSSRD FT QMVGPWQVPVADCAVTLADFEGTRGEAMSMGERTPLAMLDAPASGRMAVAEALTNLAAA FT DVARLEDIKLSANWMAACGVPGQDAALYDTVSAVSELCQSVGLSIPVGKDSLSMKTSWD FT EAGEQRQVVAPVSLIVTAFAPVGDVRASLTPQLRTDAGDTVLILIDLGRGRHRMAGSIL FT AQAYNQVGETVPDIDAPQDLRAFFVTIRTLAEAGTILAYHDRSDGGLFATLAEMAFAGR FT TGVSVNLDMLTFDPQSADWGDYKIRPEQVAVQREELTLKALFSEEAGAVIQVPASQRDA FT VMQVLRGAGLSAHSHVIGGLNGADEVEFYRDGCKVWSQPRADLGRAWSEVSYRIMARRD FT NPACAQAELDIWNDAKDPGLAPRVAFDPQEDVAAPFIATGKRPRVAILREQGCNSQVEM FT GWAFDTAGFEAIDVHMTDLLSDRIDLAGMQGLVAVGGFSYGDVLGAGEGWARTIRYNDK FT LSDQFAAYFARPDTFALGVCNGCQMMAALAPMIPGAEHWPRFTRNQSEKYEARLSLVEV FT TASPSIFFAGMEGARIPVAVAHGEGYADFTQQGDAGRALMAARYIDNHGAATETYPFNP FT NGSPGGLTAVTTADGRFTVMMPHPERVTRNVMMSWAPAQWGERDAGGAFSPWMRIFRNA FT RAWLK" FT misc_feature 1328312..1328878 FT /note="HMMPfam hit to PF00586, AIR synthase related FT protein, N-terminal domain, score 2.5e-11" FT misc_feature 1328903..1329388 FT /note="HMMPfam hit to PF02769, AIR synthase related FT protein, C-terminal domain, score 2.9e-28" FT misc_feature 1330112..1330633 FT /note="HMMPfam hit to PF02769, AIR synthase related FT protein, C-terminal domain, score 0.0056" FT CDS 1331868..1339673 FT /transl_table=11 FT /gene="fhaS" FT /locus_tag="BPP1243" FT /product="adhesin" FT /note="ortholog of Bordetella pertussis (BX470248) BP2667" FT /protein_id="CAE36545.1" FT /translation="MNAFCFRLVYSQCRAMYVPVAPRRRAARRGRGGAGPRLRCALAAA FT GVALACGAMAAPQRSPSGVPVIDIAAPNAHGLSHNRLRELDVEPPGLVFNNSLSEGRSQ FT LAGHLNRNPGLRQAATAILTEITGTRPSRLHGALEVFGRRADLIVANPNGLSVDGLVTL FT NAGRLTLSTGRPVTEGGRLRLDVDAGHIAVAGAGVNTSGLDYFDLVARTVSVDGPVAAG FT VGSRAAALAVVAGRNRFEPASGSVTPLAGSAGRGGSGHAIDGTAAGAMYGAHVTLVSSD FT SGVGVRQRGAVSSPGAITVSSRGEIRLNEATAGEGPLAVDARGAVAATALASGGAMRIA FT GEGAVQVGTATSGDALSLHAGGALQAQRLQASGPLDARAQGALRVGAAHSGAGLHVGAG FT GPLESGTLAGRADVRVDGRKAIVVESLASRGRIAVTGRDAVKVGAAESLAGIAIETAGR FT AELGTLQSRGALSVQAGGAVALQAAKTDGALRVDGAGVTLGTGSAGQARIDSSAFAHVG FT ALAAVEIHARGDVRVGEGRPGQGVAARGDVTIDAANGVLLLRNDVTADQGMVAASARAA FT VLEHAGLRSGIAPQARQARPNGGRPSVALRVQDVLFLNGTLRALDEAGAVVPGRHIEVV FT DGRVRIADEIAETVHDEESVVSDAVIAARSGAVLVEAGKFVNFGGGLGNGGKRGAGSDL FT TLRVRGDARNKGYISAGRRGELQVGAALKNEFLIDSAGTQRIEAHRIENLGTIQSLGGE FT AGAPGLTIKAAASISQAGVVAAARGVEISGRTEQRPVVAASARSSIVGERLLVRAAGWD FT NRGNLALGAGGMRAEIAGRYAERGTVSLGGEYAVSAQAIEIAGALSQSEGATTLIARQD FT MTLAGRLGLAGPVRLDAGGALSNTGTSSARGHLAVTAASLDNAAGAQLSAGSVGITVRG FT TARNAGRLLSNQDIVLGAASFYNAAQADARGNFAATVGAALENRGSLKFGGDLTLRAAR FT IDNHGVAAAGHDVGLRSPQLRNSGQVAAGHDIRIVEGRELRNPGRLDARNDIDLAVDDY FT ANAGSIHADGNATLALARGTDRDLVIDTPDILPVALGALRVKARSLRVNTEIGVPGSLV FT VQTQGNIDNRHAIVAGGNLTLASASGALNNAAGALLWAGADMALRARRITNGKAALIES FT GGGMRLAAQDTLINDLGSVRAGGDLHLDAARIENRATLAGQVRRAGENPVGGGGYGFWR FT SAAYLDYRLRYGNGAAVAAPFYETALQAEQSRIESGGDLYVNRGLGAGRRGYLRNEGVI FT QAVGHAYVNGDVENRSLLREMSVADYLRTPLAAAIELKVTDSRAALTPAYWSFRTLYEL FT VDYLVGENRWETIWGFYDTYTDWATNTLKNLDLGYVSPPPPQAPPVPAKPELALPDGSA FT DSPAARQALADYRQALREYETARAQARAAEAYGEAQRQVREILAARYGADRLAGLDTET FT AALDRVIGDYAAALARLGDDEPARAQALRKQYEQAVDRIQLAPATPGRALLARALSAAL FT GADWRAQPHPVLVQRWNDFKAGRRGALLTFHPQAQTVLAAGKGVTLSDGYLRNGENAAR FT NRGRPDTLRIGEHKVETSSGSFDALRGLGLERRLDIDGALEAVLANRHLFARVGDQPAA FT SSVAVPAAMPAPRGDADPAALRDVPRKPVAPAVALPQPLIETRIKYIDQGGFYGSGYFF FT EQIGYQPDRATRVAGDNYFDTTLVREQVRRALGGYESRLPVRGDALVARLMASAGTVGK FT ALGLKVGVAPTAQQLKQADRDFVWYVDTVIDGQKVLAPRLYLTEATRQGITDQYAGGGA FT LIASGGDVNVDTNGHDVSSLNGLIQGKRVKVDAGKGRVLVADSKGMGSGIEADEEVDVS FT GRDIDIEGGKLRGKDVRLKADTVKVATSMRYDGKGRLAARGDGALDAQGGQLHIEAKRL FT ETAGATLKGGKVKLDVDDVKLGGVYEAASSYENKRSTPLGSLFAILSSTTQTNQSARAN FT HYGTRIEAGTLEGKMQNLEIEGGSVEAAHTDLSVARDARFKAAADFEHAEHEKDVRQLF FT VSGTVGAGGYQATGTLGSETGASSYAGRGAAASASGRIGWESTWEQSTSSRKKYRNADL FT RLGDGSVVAGGVLDFGGADVNRDRYGGGAEGGSGLRLRGGEVRTTKYVDTESTVRSGGR FT VGLELGVDASVNPQVTASRLGQSLAQTGDGRGIDGGLMFGQALSTVFQSVMADTANSTL FT SMSLQGDWWNERRSATSENVTHVGGNVRIESGAGDMTLAGVRFDGGREVDLRSAGALRM FT RSAESREQRTRDAHSLSLDARMTMGANLVKADAYVRGTAGLSGRHEHEASERRTHDQTG FT IRAANVRLHAARDLVMQGARVDAAQSAQVEVGGALSMASVQDVHDESRTSASWMLAAGA FT HASTGNGFKPQPVVQVAASFSHGHDRGAVVAQRTGIAAGGPLSVRVAGDAHLTGADLAS FT ADRQGSVQVGGRVRAGQLADWRDRDGGSAGVSAPAILSTSTRPTLVVSGGRLARDHYAA FT TQRSVIAVAPDGFTAAGGVSGHLQRDPAAGREVLRDEHWAGGDMAFTLGSVPKFDRGRY FT APPRPDTSAPGGSPFSLHR" FT misc_feature 1331868..1332032 FT /note="Signal peptide predicted for BPP1243 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.782) with cleavage site FT probability 0.780 between residues 55 and 56" FT CDS 1339766..1341238 FT /transl_table=11 FT /locus_tag="BPP1244" FT /product="putative peptidase" FT /note="Similar to Homo sapiens glutamate FT carboxypeptidase-like protein 2 Cpgl2 SWALL:Q96KN2 FT (EMBL:AJ417564) (508 aa) fasta scores: E(): 3e-18, 27.12% FT id in 494 aa, and to Agrobacterium tumefaciens FT succinyl-diaminopimelate desuccinylase DapE or Atu0108 or FT Agr_c_165 SWALL:AAK85928 (EMBL:AE008984) (507 aa) fasta FT scores: E(): 3.2e-15, 26.89% id in 476 aa" FT /protein_id="CAE36546.1" FT /translation="MNARIPDDALPPALDPDALQAFVDDKWDNEIIPALTDYIAIPAKS FT PAFDADWEKNAFIERVVRDAAQWVESQRVSGLTLEVVRLPGRTPVIFFDAPATRADNGD FT TVLLYGHLDKQPEFSGWRADLGPWTPKYENGKLYGRGGADDGYAIYASLTAIMALDKQG FT IPRPRCVGIVETCEESGSYDLLPYVDVLRERLGNVALVVCLDSGAGNYDQLWMTTSLRG FT MVAGTLEVQVLDEGVHSGDSSGVVPSSFRILRHLLDRLEDSASGRLLPQSLHCEIPAER FT IEQVHATARILGDEVWRRFPWSCGAEGGFVLPMTTEPEEALLNRTWRPTLSVTGAEGLP FT PLTSAGNVLRPRTAFKLSLRLPPLVDAVAAAQEIKGLLENDAPYNAKVIFHANEGAATG FT WNAPASASWLSQALDAASQQYYGAPCGYIGQGGTIPLMSMLQKGFPKAQFMVCGVLGPK FT SNAHGPNEFLHVPYGKKLTAAVAQTMAALPTE" FT misc_feature 1339868..1341061 FT /note="HMMPfam hit to PF01546, Peptidase family FT M20/M25/M40, score 0.00031" FT CDS 1341272..1341823 FT /transl_table=11 FT /locus_tag="BPP1245" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1204 SWALL:Q9PE24 (EMBL:AE003954) (185 aa) fasta scores: FT E(): 1.3e-31, 52.94% id in 170 aa, and to Neisseria FT meningitidis hypothetical protein Nmb0572 SWALL:Q9K0M0 FT (EMBL:AE002413) (201 aa) fasta scores: E(): 1.6e-30, 53.48% FT id in 172 aa" FT /protein_id="CAE36547.1" FT /translation="MIVDVQTGAAVAAEVRLWVDKAVIGLNLCPFAKAVQAKGQVRYAV FT SDATDAEGALSDLEDELMRLSQADPQEIDTTLLILPDALDDFYDFNDFEDLSDRLLKRM FT RLVGELQVATFHPRFQFAETGPDDIENYTNRSPYPILHLLREASIDKAVEAFPDAAEIY FT EKNIETMRELGEEGWRKLME" FT CDS complement(1341938..1343230) FT /transl_table=11 FT /locus_tag="BPP1246" FT /product="putative acyl coenzyme A thioester hydrolase" FT /EC_number="3.1.2.2" FT /note="Similar to Mus musculus acyl coenzyme A thioester FT hydrolase, mitochondrial precursor Mte1 SWALL:MTE1_MOUSE FT (SWALL:Q9QYR9) (453 aa) fasta scores: E(): 3.1e-19, 28.6% FT id in 437 aa, and to Ralstonia solanacearum putative acyl FT coenzyme A thioester hydrolase protein Rsc1887 or Rs03449 FT SWALL:Q8XY76 (EMBL:AL646067) (635 aa) fasta scores: E(): FT 2.1e-62, 43.61% id in 431 aa" FT /protein_id="CAE36548.1" FT /translation="MPPRMSVAPERALIDVDREIRIDGFGPYACIDVTAEMRMCGVPWR FT SRATFLAGADGSLDLGRDSPVSGDYAEPDAMGLVWSMQCQDPPRAVFPPDRTDALTVHI FT TASDGRHEAHATLVQEFLAEGVRHQAVRARAGGMSLSGELYTPPGPGPHPAIIYMNGSS FT GGVNAPRATLFAARGYQCLALGVFNYEDRPKYLNDMPLEYLEQALRWVRDTLNPRDGFV FT AISGISRGGEMSLLAASHFPELVSAVVAYVPSPVMHGVVSAGAPGTGRDAQVWTLGGKP FT LPHLWQDNATADWEAAYASDPPYRQTHAFMSASRDARAFERARIPIERYPGPLMLISAS FT DDGFWPSTAYSEIVARQRQAAWPARPAEHYVCRGAGHHVHYPNLPSTLISKPHAMSGLL FT LDAGGTPPANAHGNAGSYRAMLDFLERARAS" FT CDS complement(1343242..1344228) FT /transl_table=11 FT /locus_tag="BPP1247" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1.4e-33, 36.13% id in 321 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 7.8e-35, 36.11% FT id in 324 aa" FT /protein_id="CAE36549.1" FT /translation="MRLTRRHVLQALAALPFAVRPSWAQDAYPSRPIRLLVGFAPGGLT FT DIAARALAERMSKAMNASVVVENRPGGQAIIATVAVARAEPDGYTLGFAGTNGMILNPL FT LYNNLPYKQADFKQLGSMGKSPMLLIVHPDLGVRNVQEFIALARQKPGEITCAHAGRGI FT INHLALLHFQSKTGTQFQDVPYKGSGPALLDLMAGTVKSTFDFPTSSIANLRAGKYKAR FT AVTADQRLSNLPDVPTMKEAGLDGFELYTRMMISGPAAMPAQVVGKLEKAVRAGTADPG FT LIQQFADQGVTIEFTSAADMDRVIAEESAMWEQVIKANNVPRTDLKS" FT misc_feature complement(1343266..1344087) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.3e-79" FT misc_feature complement(1344157..1344228) FT /note="Signal peptide predicted for BPP1247 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 24 and 25" FT CDS complement(1344426..1345262) FT /transl_table=11 FT /locus_tag="BPP1248" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc3157 or Rs00441 SWALL:Q8XUN0 (EMBL:AL646074) FT (278 aa) fasta scores: E(): 1.2e-83, 76.34% id in 279 aa" FT /protein_id="CAE36550.1" FT /translation="MSNTHEVRPGQSIELLKALHILTRDGKMNQDSRRKLKQVYHLYQF FT IEPLLQNARNARGAVTLVDHGAGKSYLGFILYDLFFKDRRDASHIYGIETRAELVQSAT FT ELAARLGFGGMSFLNLSVADSIASEQLPPRVDIVTALHACNTATDDAIRFALAKQAQSI FT VLVPCCQAEVAAVLRKNKARALADPMAELWRHPLHTREFGSQLTNVLRCLQLEAHGYQL FT SVTELVGWEHSMKNELIIARHQPGRPRREPARRLREMLERIGLQELSERFQVPAQP" FT CDS 1345399..1346007 FT /transl_table=11 FT /locus_tag="BPP1249" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein Atu3812 or Agr_l_2041 SWALL:AAL44622 FT (EMBL:AE009312) (135 aa) fasta scores: E(): 3e-17, 51.4% id FT in 107 aa, and to Rhizobium loti hypothetical protein FT Mll1528 SWALL:Q98KD4 (EMBL:AP002997) (141 aa) fasta scores: FT E(): 3.8e-16, 45.29% id in 117 aa" FT /protein_id="CAE36551.1" FT /translation="MCEKTAGDESGRRISRRAGNGEAGRLRSLSRLFDHFATAVTRWTG FT SPIAFSGACAAILAWASTGPLFGYSEVWQLVVNTGTTIVTFLMVFLIQQAQNKDSRALH FT VKLDELLVAVNGADVALAEAENLDDDRLLELADAYAARARRLVEHSTQRQRRDRGAEPE FT VGAARTRLARRPPGARARRHARLCWWQKQYARQRQGGDT" FT misc_feature join(1345516..1345584,1345612..1345671) FT /note="2 probable transmembrane helices predicted for FT BPP1249 by TMHMM2.0 at aa 40-62 and 72-91" FT CDS 1346136..1346933 FT /transl_table=11 FT /locus_tag="BPP1250" FT /product="probable membrane protein" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein Rsc1541 or Rs03761 SWALL:Q8XZ63 FT (EMBL:AL646065) (273 aa) fasta scores: E(): 7.2e-33, 49.61% FT id in 262 aa, and to Anabaena sp hypothetical protein FT Alr3906 SWALL:Q8YQC7 (EMBL:AP003594) (282 aa) fasta scores: FT E(): 3.8e-16, 32.96% id in 270 aa" FT /protein_id="CAE36552.1" FT /translation="MAGGFLGILIGLTLGLTGAGGGILAVPALVLGLGMDMPQAAPVAL FT MAVGLAAAVGSAEGLRRGTVRYKAAALMSVVGGLAAPWGAQLARLAPGPWLSGLFAMVM FT LLVAGRMLRQSLAAPAGAQAQAERPCHISPQTGKFAWTPRAAATLGGIGAISGLFTGLL FT GVGGGFIIVPALRQFSDAPMHAIVSTSLMVIALISAVTVGHAVADGLTLGAAAWTFVAA FT AVLGMVLGRALAPRLPTARLQQLFALVCVVVAGVLLWRTGWQA" FT misc_feature 1346136..1346210 FT /note="Signal peptide predicted for BPP1250 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.666) with cleavage site FT probability 0.446 between residues 25 and 26" FT misc_feature join(1346148..1346216,1346244..1346303,1346322..1346390, FT 1346403..1346462,1346580..1346648,1346676..1346744, FT 1346763..1346831,1346859..1346912) FT /note="8 probable transmembrane helices predicted for FT BPP1250 by TMHMM2.0 at aa 5-27, 37-56, 63-85, 90-109, FT 149-171, 181-203, 210-232 and 242-259" FT misc_feature 1346382..1346909 FT /note="HMMPfam hit to PF01925, Domain of unknown function FT DUF81, score 2.7e-06" FT CDS 1346930..1347745 FT /transl_table=11 FT /locus_tag="BPP1251" FT /product="putative thiol:disulfide interchange protein" FT /note="Similar to Bradyrhizobium japonicum thiol:disulfide FT interchange protein TlpA SWALL:TLPA_BRAJA (SWALL:P43221) FT (221 aa) fasta scores: E(): 2.8e-08, 31.81% id in 198 aa, FT and to Pseudomonas aeruginosa probable thiol:disulfide FT interchange protein Pa2477 SWALL:Q9I105 (EMBL:AE004675) FT (278 aa) fasta scores: E(): 7e-35, 45.48% id in 266 aa" FT /protein_id="CAE36553.1" FT /translation="MSAMVQLGPLMLPTALLLMLACVAAGSLAARWQAGSAGAGEMPLM FT RVLLAGLLAARLAFVWRHREAYLQSPWDVLDIRDGGWLAWAGFAGAWACGLWFARRRGP FT RRRPLLAGLAAATLAWTVGAAVLGIGAPAAIKAMPPLQLATPDGAPRSLAAFAGQPVVL FT NLWASWCPPCRREMPMLQRMQAARPDVHFVFVNQGESAQQVNAYLRELGMPLRNVLLDP FT GAQAGAYFGHRALPATLFFDAQGRLVDTRLGELSQASLVQRLGALRPAP" FT misc_feature 1346930..1347016 FT /note="Signal peptide predicted for BPP1251 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.340 between residues 29 and 30" FT misc_feature join(1346957..1347025,1347059..1347112,1347170..1347226, FT 1347263..1347331) FT /note="4 probable transmembrane helices predicted for FT BPP1251 by TMHMM2.0 at aa 10-32, 44-61, 81-99 and 112-134" FT misc_feature 1347413..1347469 FT /note="PS00194 Thioredoxin family active site." FT CDS 1347775..1348611 FT /transl_table=11 FT /gene="dsbG" FT /locus_tag="BPP1252" FT /product="thiol:disulfide interchange protein precursor" FT /note="Similar to Escherichia coli thiol:disulfide FT interchange protein DsbG precursor DsbG or B0604 FT SWALL:DSBG_ECOLI (SWALL:P77202) (248 aa) fasta scores: E(): FT 5.6e-26, 39.75% id in 249 aa, and to Pseudomonas aeruginosa FT thiol:disulfide interchange protein DsbG precursor DsbG or FT Pa2476 SWALL:DSBG_PSEAE (SWALL:Q9I106) (256 aa) fasta FT scores: E(): 1.2e-34, 46.71% id in 259 aa" FT /protein_id="CAE36554.1" FT /translation="MSDPILPRAAAGLRCACAVLAGAVLAAGAAQAQQPPAPVAALAQH FT GIEILGTFPAPGGLTAWAAHAGDRPVALYATPDGKHVIVGTMFDAEGRDVTQAALEQAI FT EPALSDKLWSALEQSAWVADGKAGAARIVYVFTDPNCPYCNKLWADARPWVEAGKVQLR FT HIPVGILTASSEGKAAAILAAPDPAKALHDHEAGHVASNTRALAAGERKPLDERGIQPL FT ADIPAEIAARLNANETLMAQWGLRATPAIVWREQGGRVRKRTGAPPALLPQLFGAL" FT misc_feature 1347775..1347870 FT /note="Signal peptide predicted for BPP1252 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.940 between residues 32 and 33" FT CDS 1348608..1348925 FT /transl_table=11 FT /locus_tag="BPP1253" FT /product="hypothetical protein" FT /note="No significant database matches" FT /protein_id="CAE36555.1" FT /translation="MMTAAPCVRVLLHAPTAGALERARNNAANLLKEAPGAQVRIVANA FT AAVAAALDAPPHPADAHTWLCPNTLARLERPARAPLRALPQAAVLALALLQEEGWRYIR FT A" FT CDS complement(1349386..1350060) FT /transl_table=11 FT /locus_tag="BPP1254" FT /product="hypothetical protein" FT /note="Similar to the C-terminal region of Bacteriophage FT K139 hypothetical 33.8 kDa protein SWALL:Q9XJG0 FT (EMBL:AF125163) (301 aa) fasta scores: E(): 3.2e-16, 30.76% FT id in 182 aa" FT /protein_id="CAE36556.1" FT /translation="MGWLTDNFGAPATATSEVEAAPAYHIYRAHAVQARQVDELIGLVK FT GVLADGAICQEEVAFLLRWMQTNQDASNKWPAKALYPRIAAALADGHMDAMEEAEIMAL FT LLATVGSEDAAGQPAINKSTALPLCSPVPDIHFDAHTFCFTGKFTSGTRDWCSQQVVER FT GGSSLSNVTKKLDYLVIGELGNPDWLHSTFGLKIKKAVDYRSSGVALRIISEQAWYEHL FT LS" FT CDS 1350373..1351500 FT /transl_table=11 FT /locus_tag="BPP1255" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2629" FT /protein_id="CAE36557.1" FT /translation="MDATLHADADAITQLLYDGIVDSGDWYAGVELLRARMGAAFFHQM FT TVDCANGAVSDGLATFEAPQDKAREYEQHYARTDERMHAVLAMPAGSMVIDHERFDTSA FT MSSSAIYSDWLPSVGLRHTVGLTLREDGSRKEVIGIMRAREDGMFRASEIALCQRALPH FT LARASALRARVAGLQDRAGFGLAALDALRQGIVVLDAQAAVQYANPAARALAAAGALCR FT VRHDTWRFADAPVQARFQQALAGACARGEPSCAGAFMVHTPQGPVAVSVLPLKAGHPLL FT AWRGVPLAMLSIGAGAQTDVAPPDLLRQALGVTLAEARLAHALAQGLTVKGYALRADLS FT EQTVRGHLKNLLRKTDCHRQVELVTLAQSVQAPPE" FT misc_feature 1351300..1351494 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family, score 0.0017" FT CDS 1351750..1353906 FT /transl_table=11 FT /locus_tag="BPP1256" FT /product="autotransporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP2627" FT /protein_id="CAE36558.1" FT /translation="MKKQVVEYVRCGVPRLRPVMASLALAACHGLASAAPALPPATVGM FT GMHQLAVPMGTTFIPMAMSSDATVLAGTGSVPGLGPHAAMWPLSNPFPYYVIAGDRSSF FT HALSQDGSVGVGVVVSGGLSQAVRWDNGSWFQPLGVGTDGATQSYASGVSADGSVVVGW FT LTWDGAGERRPFRWTQATGVQTLSGFESYSFALASGISADGKVVVGDVYTDGALITPNA FT YRWTATDGIDLLPHVAGGTSSRAAATNSDGSVVVGTAYGSSFGGARAFRWTQAGGSANL FT GTIAGGEAGQSFASAVNADGSVVVGYVDRTGIGLLTEQSAFRWTQAGGMLTVEQWLRGH FT GYTIADGQTWRALAVNADGTIVMGMMQNGDTFVARTPADKVPDPVSPGGGEPAPQPGGQ FT PGSQPGGGGLITLREFASSLGGTAALPASLTSSTDMLLHGAHGSPLRSLVPAGKVGMWT FT TGDWGRTEHGGQDGIAAVGEAGLSYRFNEQVQLNLAVGGGNMRQYLEYDGKSTARQTYV FT MPELLWNLPSTPLWLTASALYADGDLNVRRGYLNAGVDDRSSGKASLRTTAARLRLDWR FT DALAWERAALTPYLDYSYIRTRVGSYTEHGGGFPARWDARTDHANVARLGVDATVQVGG FT NVQLLGTVEASHRFESHNSGASGQVIGLMPFELDGASTQRNWLRFGAGVQAPVGLGTAS FT LMLNTTTHSSMPSYWLAATYRLAF" FT misc_feature 1351750..1351851 FT /note="Signal peptide predicted for BPP1256 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.944 between residues 34 and 35" FT misc_feature 1351801..1351833 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(1353903..1354514) FT /transl_table=11 FT /locus_tag="BPP1257" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2626" FT /protein_id="CAE36559.1" FT /translation="MTTPMPVYAAFAGHALLAAGPLAEVALAARRAADGDAGAAVFIYE FT DATGRAIDVDTRGTDAEIVARLPLPTPVEPEAEAEPEGSPARPRGRGRPRLGVVAREVT FT LLPRHWDWLAGQPGGASVALRKLVEQARREHAGADALRRGRDAAYTFMSAAAGNLPGFE FT EAVRALYAGDAERLAAHMAGWPADVRAYALRLAGAADLPA" FT misc_feature complement(1354461..1354514) FT /note="Signal peptide predicted for BPP1257 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.775) with cleavage site FT probability 0.581 between residues 18 and 19" FT CDS 1354737..1356197 FT /transl_table=11 FT /gene="guaB" FT /locus_tag="BPP1258" FT /product="inosine-5'-monophosphate dehydrogenase" FT /EC_number="1.1.1.205" FT /note="ortholog of Bordetella pertussis (BX470248) BP2625" FT /protein_id="CAE36560.1" FT /translation="MRLVQKALTFDDVLLVPAYSEVLPRDTSLTTRLTRNITLNIPLVS FT AAMDTVTEARLAIAMAQEGGIGIIHKNLSADDQAKEVARVKRHEFGIVIDPVTVTPDMK FT VRDAIALQRQHGISGLPVVEGRKLVGIVTNRDLRFEDRLDQPLRNIMTPQDRLVTMKEG FT ATLDEAQALMHKHRLERVLIVNDAFELRGLATVKDIVKNTEHPYACKDSQGQLRVGAAV FT GVGAGTEERVEKLVAAGVDVIIVDTAHGHSAGVLERVRWVKQNYPKVEVIGGNIATAAA FT ARALVEAGADGVKVGIGPGSICTTRIVAGVGVPQISAISDVAKALEGTGVPLIADGGIR FT YSGDVAKALAAGAFACMMGGMFAGTEEAPGEVVLFQGRSYKSYRGMGSLGAMADGSADR FT YFQDPANNADKLVPEGIEGRVPYKGSVLAIIYQLVGGIRASMGYCGCASIDDMRTKTQF FT VEITSAGVRESHVHDVQITKEAPNYRAD" FT misc_feature 1354737..1355000 FT /note="HMMPfam hit to PF01574, IMP dehydrogenase / GMP FT reductase N terminus, score 1.1e-56" FT misc_feature 1355004..1355162 FT /note="HMMPfam hit to PF00571, CBS domain, score 3.9e-12" FT misc_feature 1355187..1355348 FT /note="HMMPfam hit to PF00571, CBS domain, score 4e-09" FT misc_feature 1355436..1356104 FT /note="HMMPfam hit to PF00478, IMP dehydrogenase / GMP FT reductase C terminus, score 1.9e-122" FT misc_feature 1355613..1355651 FT /note="PS00487 IMP dehydrogenase / GMP reductase FT signature." FT CDS 1356294..1357886 FT /transl_table=11 FT /gene="guaA" FT /locus_tag="BPP1259" FT /product="GMP synthase [glutamine-hydrolyzing]" FT /EC_number="6.3.5.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP2624" FT /protein_id="CAE36561.1" FT /translation="MHQRILILDYGSQVTQLIARRVREAGVYSEIHAGDVDDAFVRDQV FT AQGLKGIILSGSHASAYEEGSMRVPAAVFEVGVPVLGICYGMQSMAQQLGGTVSFSDHR FT EFGYAEVRAHGHTKLLDGLADFTTDEGHGMLKVWMSHGDKVTELPPGFKLMASTASCPI FT AGMADEDRGFYAVQFHPEVTHTVQGKAMLARFVKDICGCEGDWNMPDYISEAVARIREQ FT VGSDEVILGLSGGVDSLVAAALIHRAIGDQLTCVFVDHGLLRLDEGKQVMQTFAENMGV FT KIVHVDATSQFMGKLTGVADPEAKRKIIGREFVEVFQDEAGKLQGAKWLAQGTIYPDVI FT ESAGAKTGKATSIKSHHNVGGLPDTLNLQLLEPLRELFKDEVRELGVALGLPPQMVYRH FT PFPGPGLGVRILGEVKHEYAELLRRADAIFIEELRNAKDPASGLTWYELTSQAFAVFLP FT VKSVGVMGDGRTYEYVVALRAVQTFDFMTADWAPLPHPLLARVSSRIINEVRGINRVVY FT DVSSKPPATIEWE" FT misc_feature 1356309..1356890 FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I, score 4.5e-37" FT misc_feature 1356528..1356563 FT /note="PS00442 Glutamine amidotransferases class-I active FT site." FT misc_feature 1357500..1357880 FT /note="HMMPfam hit to PF00958, GMP synthase C terminal FT domain, score 3.1e-64" FT CDS 1357966..1358127 FT /transl_table=11 FT /locus_tag="BPP1260" FT /product="putative phage protein" FT /note="Similar to Bacteroides nodosus VrlI SWALL:O86180 FT (EMBL:U20246) (67 aa) fasta scores: E(): 0.0075, 30.61% id FT in 49 aa, and to Bacteriophage SPP1 Orf37.3 SWALL:Q38149 FT (EMBL:X67865) (57 aa) fasta scores: E(): 0.017, 36.36% id FT in 44 aa" FT /protein_id="CAE36562.1" FT /translation="MAVYLKAGKKTVYRLAQRGEIPEFKLGGTWRFRRSELDRWIAAQI FT AEKTQDKT" FT CDS join(1358186..1359910,1359912..1360967) FT /pseudo FT /transl_table=11 FT /gene="yeeA" FT /locus_tag="BPP1261" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Pseudogene. This CDS contains a frameshift following FT codon 575. Similar to Bacillus subtilis hypothetical FT protein YeeA SWALL:O31504 (EMBL:Z99107) (879 aa) fasta FT scores: E(): 2.2e-58, 38.08% id in 919 aa, and to Neisseria FT meningitidis hypothetical protein Nma1791 SWALL:Q9JTG2 FT (EMBL:AL162757) (803 aa) fasta scores: E(): 2.3e-45, 33.25% FT id in 845 aa" FT /db_xref="PSEUDO:CAE36563.1" FT misc_feature 1359719..1359742 FT /note="PS00289 Pentaxin family signature." FT misc_feature 1359960..1361742 FT /note="Region with low %GC" FT CDS 1360964..1361746 FT /transl_table=11 FT /locus_tag="BPP1263" FT /product="hypothetical protein" FT /note="No significant database matches" FT /protein_id="CAE36564.1" FT /translation="MRDHVLLQMWGPFRESLIKGHLFYTEQAQKRLLSQFEDMEAEADR FT AAEEWLEKSGPRFDPDRHDPGDFYEAANDAGIEFYGLLSDMRDQTRLSVVAGMFHEWDK FT QLRDWLVREIQHWHHGDNVNMQVWSVNFVQMVDLLERFGWDLRSKNYFPALDACRLVVN FT VYKHGDGKSLDDLKKAYPEYLEDPLAGLREDLSSLQFRDHTNLKVSDDQIQEFSIAIMN FT FWRDVPENVFSTQVTDVPQWFENAMKKDQGNSQQTSKK" FT CDS 1361743..1363800 FT /transl_table=11 FT /gene="yeeB" FT /locus_tag="BPP1264" FT /product="conserved hypothetical protein" FT /note="Similar to Bacillus subtilis hypothetical protein FT YeeB SWALL:O34469 (EMBL:Z99107) (598 aa) fasta scores: E(): FT 2e-90, 48.96% id in 627 aa" FT /protein_id="CAE36565.1" FT /translation="MSNRIDQSVPSVSVTYARNGASTKANALGMRPMQERAYEKRGEQY FT LLIKSPPASGKSRALMFVALDKLKNQGLKQAIIVVPEKSIGASFNDEPLSKYGFWADWQ FT VEPKWNLCNAPGNDNGGKVKSLGAFLEGDDKVLVCTHATFRFAVDAYGVEAFDDRLIAV FT DEFHHVSANPDNKLGLHLGQFFARGKTHIVAMTGSYFRGDAEAVLAPQDESKFDTVTYT FT YYEQLNGYEYLKQLDIGYFFYSGPYVDDILNVLDPAEKTIIHIPNVNSRESTKDKMREV FT EHIIEALGEWQGIDAATGFQLVKRPDGRVLRIADLVDDDAAKRDRVSAALKDPAQKNNR FT DYVDIIIALGMAKEGFDWIWCEHALTVGYRASLTEIVQIIGRATRDAPGKTRARFTNLI FT AEPDAAEEAVTEVVNDTLKAIAASLLMEQVLAPRFEFKPKNPDSGPTPGFNYGEDGYDA FT DRCNVGVNEQTGAYQIEIKGLAEPKSKEAARICQEDLNEVIAAFVQDKPTIERGLFDEE FT LVPEELTQVRMGKIIKDKYPELDAEDQEAVRQHAIAALNLTQQAKRLVTEGEGDGSPNT FT ALIDGVRRFAMDVRELDIDLIDRINPFGEAYAILAKTMSEDSLKQVAAAISAKRTSLTP FT DEAKEMAVRAVQFKKERGRIPALDSQDAWERRMAEGAAAFMRFKAEGRYA" FT CDS 1363793..1364989 FT /transl_table=11 FT /gene="yeeC" FT /locus_tag="BPP1265" FT /product="conserved hypothetical protein" FT /note="Similar to Bacillus subtilis hypothetical protein FT YeeC SWALL:O34352 (EMBL:Z99107) (382 aa) fasta scores: E(): FT 7.2e-30, 35.69% id in 367 aa" FT /protein_id="CAE36566.1" FT /translation="MRDADLDDLAAELAEFAPPEKKGGRPASEERVIAGFEEIQRFTEK FT HGRAPLHGEDRDIFERLYAVRLDRLRALPDCRALLEPLDHQGLLAEAPTVAASTDEAID FT IDDLAAELAGLANAGDADDITVLRHVRNSADKRAAEEVADRKPCEDFEAFKPLFERVAT FT EVKTGLRQSQPIEAGRRAIEAGDFFVLDGITLYVAEVGEPLKTTAGEVDRRLRLIFSNG FT TESNLLLRSLQRAFYNDPAARRLALPESGQLSFGGELEADDAESGTIYVLRSLSDHPYV FT AQHRDIIHKMGVTGGRVETRIANAEHDSTYLLAKVEVVATYKLAGINRTRMENLFHRLF FT APARLNITINDRFGHPVQPEEWFLVPLFVIDEAVARIKDGSITGYVYDPKAAKLVKVA" FT CDS 1365047..1366153 FT /transl_table=11 FT /locus_tag="BPP1266" FT /product="hypothetical protein" FT /note="No significant database matches" FT /protein_id="CAE36567.1" FT /translation="MKLKREAKTLKAKAIASLKRGLEIFNNHDDDGRPETVLLMLQHAS FT EMLAKALLVQKGQDVFDKEKGTSIGIEKALNIAQSKGWMSASQAGAIRVIDALRDQAQH FT WMIVVPEDALYINARALITVLDEILTVHFQDTIADNLPVRVLPLSTQPLPDFLMLVNRE FT YAQIRELLAPGRRARDEARGRITALLAMEAHVSEEVAVSKRDLDRIEEAIKDDTPVEQV FT FPRLMTLATNIEGDGPTIRVRITRAADAPAVRFVSGDDPEGAAAIRDVDLQKKYHWSPS FT ALAEKLGLTINKAKAVRDFLRIDEDQSNVMVFEFGSQNTRGIPTMRCARFGKLSPRNWS FT RKHGRHARGVAVDSLVAQCSFSARPSHA" FT CDS 1366198..1366398 FT /transl_table=11 FT /locus_tag="BPP1267" FT /product="hypothetical protein" FT /note="No significant database matches" FT /protein_id="CAE36568.1" FT /translation="MTKLHQDDQPQPCFITDGPPSNDLPPPPHRTMNLPQILASLANEE FT LAGWPGDLADAEREKRRKAGV" FT CDS complement(1366738..1367427) FT /transl_table=11 FT /locus_tag="BPP1268" FT /product="putative TetR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2621" FT /protein_id="CAE36569.1" FT /translation="MYDRIYSMMKNPVRANTPNPAMTQPAPAPTVDGRRLRGERARARV FT LDEAVKLLSVEGLDGITFGQVAERAEVGKSNLQVLFGDKERLQLAALDHAIALYQAQVI FT EPAMRKRTPLARLRALMNGWFDFVETRQLPGGCVITAASSEYRARPGPLRDAIQQYRDA FT ARARLRELIHQAKAQGQLAADTNEARLAMDLLAYQAYANVAASMDDAAEFKRAKAAVVE FT MLEGSAG" FT misc_feature complement(1367155..1367295) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 1.1e-05" FT CDS 1367440..1368870 FT /transl_table=11 FT /locus_tag="BPP1269" FT /product="probable membrane efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2620" FT /protein_id="CAE36570.1" FT /translation="MTDAMPPPNVERRHPWRALVVLLTGNFVTILDLFIVNVALPSIQQ FT GLSATDTDLQLVVVAYALAYGLCLINGARLGDLFGRRRLFMAGMGLFTLASALCGVAVT FT PWQLIAARALQGVGAGVLMPQVLESIRVLFEGEARRRAFGVMGAVQGVAATVSQLLGGV FT LITMNAFGLGWRLVFLINVPVGIAALLAGRRALPEWRAPVATKVDMWGALLGAVGLALI FT LVPVMEGREHGWPWWSLAGPVLALLVLGYFVHYEQGLVRRGGVPMLDMGLFANRPFVAG FT IGAVFFFFSAISSFFFALTLLLQFGLGMAPLAAGAVFTPSALAFFGASLVGPRLAARYG FT RGALLFGVLVFAAGVALSAVTAATQPHHLPLLVASLVLNGAGQGLAIPLAFNAILGAVR FT EEQAGMASGMLSTLQVVGTSVGVAVVGAVVFAALEAAGRWPAADGAMVYGRALAVAMVY FT NVAAALASWVLFRLAMRR" FT misc_feature 1367488..1368750 FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 0.0065" FT misc_feature join(1367494..1367562,1367605..1367664,1367698..1367766, FT 1367776..1367844,1367863..1367931,1367959..1368027, FT 1368064..1368123,1368136..1368204,1368268..1368336, FT 1368364..1368432,1368469..1368537,1368565..1368633, FT 1368670..1368738,1368781..1368849) FT /note="14 probable transmembrane helices predicted for FT BPP1269 by TMHMM2.0 at aa 19-41, 56-75, 87-109, 113-135, FT 142-164, 174-196, 209-228, 233-255, 277-299, 309-331, FT 344-366, 376-398, 411-433 and 448-470" FT CDS complement(1368903..1370090) FT /transl_table=11 FT /locus_tag="BPP1270" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1352 SWALL:Q9I3Z2 (EMBL:AE004564) (403 aa) fasta FT scores: E(): 5.1e-81, 61.85% id in 388 aa, and to Rhizobium FT meliloti hypothetical protein Ra1073 or Sma1959 FT SWALL:Q92Y15 (EMBL:AE007293) (469 aa) fasta scores: E(): FT 3.8e-62, 49.86% id in 381 aa" FT /protein_id="CAE36571.1" FT /translation="MPRGLVWLFAIASGLSVANVYYAQPLLDALARDFRISHAAIGGVV FT TATQIGCALALLLVPLGDRMNRRRLMAMQLLALVGALAAVGAARSAPALLAGMLAVGLL FT GTAMTQGLIAYAASAAAPHEQGRVVGAAQSGVFIGLLLARVFAGGVSDLAGWRGVYLCA FT AALMLALALPLWRWLPTLAAAPGAMRYPRLIASLLTLLREEKALQVRGMLALLMFAAFN FT IFWSALVLPLSAPPYGFSHTAIGAFGLVGVVGALAAARAGQWADQGHAQRTSAAALAAL FT LLAWWPLSLMEESLGALVIGILLLDLGGQALHVTNQSLILRTRPQAHGRLVGLYMLFYA FT IGSGLGAIGTTAAYAHAGWRGVCLLGAAVSLLALLFWWATRRTGHPAAPYRASRP" FT misc_feature complement(join(1368954..1369019,1369032..1369097, FT 1369314..1369379,1369392..1369457,1369554..1369619, FT 1369650..1369706,1369746..1369811,1369827..1369880, FT 1369908..1369973,1370019..1370075)) FT /note="10 probable transmembrane helices predicted for FT BPP1270 by TMHMM2.0 at aa 5-24, 39-61, 70-88, 93-115, FT 128-147, 157-179, 211-233, 237-259, 331-353 and 357-379" FT misc_feature complement(1370022..1370090) FT /note="Signal peptide predicted for BPP1270 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.973) with cleavage site FT probability 0.595 between residues 23 and 24" FT CDS 1370266..1370694 FT /transl_table=11 FT /locus_tag="BPP1271" FT /product="putative transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1607 SWALL:Q9I3B4 (EMBL:AE004588) (146 aa) fasta FT scores: E(): 7.4e-24, 52.89% id in 138 aa, and to Rhizobium FT meliloti hypothetical protein Ra1074 or Sma1960 FT SWALL:Q92Y14 (EMBL:AE007293) (125 aa) fasta scores: E(): FT 6.6e-20, 57.4% id in 108 aa" FT /protein_id="CAE36572.1" FT /translation="MPPRKPMNDEPCPVARCVDLIGDRWSLLIVRDAFDGARRFGDFQR FT GLGVARNILSDRLRKLVEAGVLEMQDASDGSAYQEYVLTARGESLFPVLVALRQWGERH FT LFERGERHSVLLDRRTGKPVAFMAPVAQDGTVLAPAAA" FT misc_feature 1370323..1370595 FT /note="HMMPfam hit to PF01638, Transcriptional regulator, FT score 9e-22" FT CDS 1370798..1371889 FT /transl_table=11 FT /locus_tag="BPP1272" FT /product="putative C4-dicarboxylate transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP2619" FT /protein_id="CAE36573.1" FT /translation="MSPRGPELAPSSAPANPGLLAGLSPASFGIVMATGIVSLACASLG FT LPSVGRWLFALSVLLYAVVWGLNLARLLRHPRRMRNDACDHGRAPGFFTAVAASGVLGG FT QCLLLADARGAAMWLEAVAVVLWVVLSYGIFAAVMVKRDKPRLEQGMSGGWLLAVVATQ FT ALVGLGTLLAPGLDEAWQGRLALALLGLWLWGGVLYALLMSLIFYRILFLPLSPTDLSP FT PYWINMGAMAISTLAGTLLLQQSHAWPLLQTVQPFVQGVTLLFWAGGSWWIPLLLVLGV FT WRHGLQRHPLRYEGLYWAMVFPLGMYAMATHHLALALEQAWLEPLARAFMWVALGAWTL FT AALGLVGALGQMLRRQLNFPARH" FT misc_feature join(1370855..1370923,1370951..1371004,1371062..1371121, FT 1371149..1371217,1371254..1371322,1371365..1371433, FT 1371467..1371526,1371584..1371643,1371680..1371748, FT 1371776..1371844) FT /note="10 probable transmembrane helices predicted for FT BPP1272 by TMHMM2.0 at aa 20-42, 52-69, 89-108, 118-140, FT 153-175, 190-212, 224-243, 263-282, 295-317 and 327-349" FT misc_feature 1370864..1371751 FT /note="HMMPfam hit to PF03595, C4-dicarboxylate FT transporter/malic acid transport protein, score 5e-06" FT CDS complement(1371867..1372517) FT /transl_table=11 FT /locus_tag="BPP1273" FT /product="putative glutatione S-transferase" FT /EC_number="2.5.1.18" FT /note="Similar to Rhizobium meliloti probable Gst14 FT glutatione S-transferase Gst14 or Ra1248 or Sma2319 FT SWALL:Q92XJ6 (EMBL:AE007309) (198 aa) fasta scores: E(): FT 8.3e-58, 75.63% id in 197 aa, and to Caulobacter crescentus FT glutathione S-transferase family protein Cc2309 FT SWALL:Q9A5Y8 (EMBL:AE005901) (220 aa) fasta scores: E(): FT 8.1e-55, 66.51% id in 215 aa" FT /protein_id="CAE36574.1" FT /translation="MIPTITAFERSPDGGNGLARDMRVRWALEEVGQPYRARLLSFEAM FT KQPAHLALHPFGQIPTYEADGLALFESGAIVLHIAERHGGLLPDDAHARARAIAWMFAA FT LDTVEPPIFERAIATVLERDAPWYAQRLQVLEDRIRQRLASLSRRLGQADWLDGPFSAG FT DLLMVTVLRRLNGSDMLDAYPNLAAYVARGQARPACQRAFDAQRAAFNAAPGS" FT misc_feature complement(1372275..1372487) FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal domain, score 1.8e-10" FT CDS complement(1372514..1373707) FT /transl_table=11 FT /locus_tag="BPP1274" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2611" FT /protein_id="CAE36575.1" FT /translation="MFKRRLLRAALPLLLLSLGGFGAWLISLPSAPAGLASPPIAASET FT TALLASLAPTRRQRPLIAVVGINDATETTDYLVPTGILQRADVADVVTLATGPGPVRLF FT PALTVEADATLDAFDARNPAGADYVIVPAMTRDDDPAVLAWLRGQARKGATIIGVCAGA FT KVVAAASLLDGKRATTHWYYLKELLGRHPSIRYVADRRVVADRGVVTTTGVTASMPMTL FT LLIEAIAGRHKARAVAQDLAIPAWDIRHASGAFALTRPFATTVLGNVLAFWNREQIGIE FT LRPGMDEVSLALAADAWSRTYRSQAVSYAQASGAIATRNRIRVIPDAAAADWPATRRID FT TYTDQAPAQTLDRTLRAIAGRYGAPTASVVAMQLEYPWRGASAATTALAAHANGGLP" FT misc_feature complement(1373021..1373527) FT /note="HMMPfam hit to PF01965, ThiJ/PfpI family, score FT 3.4e-11" FT misc_feature complement(1373582..1373707) FT /note="Signal peptide predicted for BPP1274 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.370 between residues 42 and 43" FT misc_feature complement(1373630..1373686) FT /note="1 probable transmembrane helix predicted for BPP1274 FT by TMHMM2.0 at aa 7-26" FT CDS complement(1373768..1375495) FT /transl_table=11 FT /locus_tag="BPP1275" FT /product="putative solute transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2610" FT /protein_id="CAE36576.1" FT /translation="MASSPADTPHRNWLRWLPGLAVLKTYQAAWLPRDLAAGLVLTAML FT VPVGIAYAEASGVPGVYGLYATIVPLLAYALFGPSRILVLGPDSALAAPILAVVLSVSE FT GDPMRAVATASLMAIVSGLFCIILGLLRLGFITELLSKPIRYGYMNGIALVVLASQLPK FT LFAIPTDDGGPLRELWQLAQAVLDGRTNGYSLAVGSAALGLILLLKRFKRLPGILIAVV FT LATLAVSLFGLDGRGVQVLGEIPQGLPGFTIPWLSNADLARIVLGGCAIALISFADTSV FT LSRTYAARTHTRVDPNQEMVGLGVANLATGFFQGFPVSSSASRTPVAEAAGSRTQLAGV FT VGALAVAALLLAAPNLLRHLPSSAMAAVVIAAAIGLFEFKDLRRIFRIQQWEFWLSMLC FT FAAVVAFGAIPGICLAVVVAVLEFLWDGWRPHFAVLGRVPDLRGYHDLKRYPHAALIDG FT LVLFRWDAPLFFANAELFQQRLLEAVQASPTPVQRVVVTAEPVTSVDVTSADMLRELSH FT HLAESGIALHFAEMKDPVRDKLKRFELSEVFGADRFHPTVESAVDDYLKRPPQGTIDP" FT misc_feature complement(1373816..1374148) FT /note="HMMPfam hit to PF01740, STAS domain, score 6.8e-19" FT misc_feature complement(1374215..1375114) FT /note="HMMPfam hit to PF00916, Sulfate transporter family, FT score 2.7e-78" FT misc_feature complement(join(1374236..1374301,1374365..1374415, FT 1374428..1374484,1374647..1374712,1374797..1374853, FT 1374875..1374931,1374992..1375057,1375097..1375162, FT 1375247..1375312,1375334..1375390)) FT /note="10 probable transmembrane helices predicted for FT BPP1275 by TMHMM2.0 at aa 35-54, 61-83, 111-133, 146-168, FT 188-207, 214-233, 261-283, 337-356, 360-377 and 398-420" FT CDS 1375607..1376965 FT /transl_table=11 FT /locus_tag="BPP1276" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2609" FT /protein_id="CAE36577.1" FT /translation="MLTLTCLGGAGTVTGSKHLLRHGDTRLLVDCGLFQGLKNLRELNW FT QPLPVAPADVDAVVLTHAHLDHCGYLPRLVAEGFRGRIHATPATRDVSELILLDSANLQ FT EKDAEFANRKGYSRHAPALPLYRVVDAERALARFSDVALHRETALPGGATLTLRRAGHI FT LGAATAQIDIGGMRVVFSGDLGRYNDPVMHDPEDVRNADYLVIESTYGNRRHDAADPVE FT ALGAVIERTVLRGGTVVIPAFAVGRAQTLIHALWKLRQAGRLHNVPVYLDSPMATSATE FT LLARHASEHKLSAQDCEAACAAVTYVRDVEGSKALSANRYPKVIISASGMATGGRVLHH FT MAAFGADHRNTLLFAGFQAAGTRGRKLLDGATETRIYGQWMPVRAEVAELPMLSAHADS FT DELMRWLAGFQEAPRRVFIVHGEPQASQALRERIQRELNWQAIVPVQDRRYTL" FT misc_feature 1375634..1376290 FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily, score 0.0025" FT CDS complement(1376985..1377890) FT /transl_table=11 FT /locus_tag="BPP1277" FT /product="probable AraC-family transcriptional regulator" FT /note="Similar to Vibrio cholerae transcriptional FT regulator, AraC/XylS family Vca1001 SWALL:Q9KKU9 FT (EMBL:AE004427) (277 aa) fasta scores: E(): 4.6e-22, 31.55% FT id in 263 aa, and to Pseudomonas aeruginosa probable FT transcriptional regulator Pa5342 SWALL:Q9HTL6 FT (EMBL:AE004946) (266 aa) fasta scores: E(): 2.1e-20, 35.17% FT id in 253 aa" FT /protein_id="CAE36578.1" FT /translation="MDKTANPIPPGVSQEPGVLCDGQSAIHAWRCGGVVLEAHTGMPTA FT LPRHAHDTYQIGITTRDPGEYLCEGRTWNAPPGSVILFHPGDVHSVVTVGVRNRRDTSL FT LMFVDPRQMQDIATSLRGVDCGLPVFDDLVIRDAAFIRRFADTHARTRAHANPLEQESR FT LLALLQCLVGGFSAGPIAPRPVARNRRKALLVRDYIDAHYRDTLSMAQLADVAHTSPYH FT LNRLFAREIGIPPHAYQTQLRVERAKRLLLRGTSITDAALSTGFFDQSHFTRYFKRIVG FT VPPRRYTSPAAWHPPRGQAG" FT misc_feature complement(1377024..1377152) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 3e-05" FT misc_feature complement(1377039..1377164) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT misc_feature complement(1377171..1377308) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 3e-06" FT CDS 1378174..1379163 FT /transl_table=11 FT /locus_tag="BPP1278" FT /product="putative exported protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 35.6 FT kDa protein in gbd 5'region precursor SWALL:YGB7_ALCEU FT (SWALL:Q44018) (327 aa) fasta scores: E(): 9.5e-48, 44.47% FT id in 317 aa, and to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 9e-25, 32.82% id in 326 aa" FT /protein_id="CAE36579.1" FT /translation="MSGNPSAHRPRRRALLALAGAAMIARPAIARSRFPDRSIRLVVPW FT LPGSAADNELRALAHVAGRDFGQSVVIENKAGASGILGAQMIAAEKRADGYLLTQMHTT FT AFRMTALMDKPPYDVMDDYSWIIQLVGYSYGTVVRADSRWKDWDGFVAYSKANPGKVTL FT GTAGVGTTQHITMMQVAKKLGVEWLHVPFRGGGDEAQALLGGQIDAVASSTYWAELVNA FT GKLRLLATFGVERVKRFPDVPTLRELGVDIAQIAPYGLVAPRGLDPDVKRVLHDGFRKA FT LYSPQHQAAIERLDMPLAYLNSEDYEQAAKALFREEVEAIRSLGIKNG" FT misc_feature 1378174..1378263 FT /note="Signal peptide predicted for BPP1278 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.985 between residues 30 and 31" FT misc_feature 1378339..1379151 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.8e-67" FT misc_feature 1378552..1378581 FT /note="PS00120 Lipases, serine active site." FT CDS 1379189..1380280 FT /transl_table=11 FT /locus_tag="BPP1279" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2211 SWALL:Q9I1Q6 (EMBL:AE004647) (319 aa) fasta FT scores: E(): 3e-11, 34.01% id in 341 aa, and to Rhizobium FT loti hypothetical protein Mlr1708 SWALL:Q98JZ6 FT (EMBL:AP002998) (295 aa) fasta scores: E(): 2.7e-08, 30.9% FT id in 330 aa" FT /protein_id="CAE36580.1" FT /translation="MENALSTLPLTAPSAELPRFGPPHIPIREDWLDRQREEILDPGLP FT IVDAHHHLWDRPGQRYMFEDFLRDTGSGHNIRATVYVQCRSMYRLDGPADLRPVGEAEF FT VNGVAARSASGMYGPMRACAAIVGYADLTLGAAVEEVLHALVRAAPDRLRGVRNMTAAH FT ASPAVAPGFGRVPEGLLSDARFRAGYARLAPLGLSYDVWAFHSQLAEVLDLARAYPDTA FT LIVNHAGGPLGIGPYAGQRDEVMRDWDHHLRALADCPNVALKLGGLGMHISGLRFHEQD FT MPPSSEALAEAWRPWIHTAIERFGAQRCMFESNFPVDKGMAAYAAVWNAFKRLARGATP FT RERQALFAGTAARLYRLPASVLA" FT CDS complement(1380345..>1380638) FT /transl_table=11 FT /locus_tag="BPP1279A" FT /product="putative exported (partial)" FT /note="The N-terminal region of this CDS is deleted FT relative to its orthologue in B. bronchiseptica. Similar to FT Rhizobium meliloti hypothetical protein ra1058 ra1058 or FT sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 1.7e-09, 40.62% id in 96 aa, and to Agrobacterium FT tumefaciens hypothetical protein atu4727 atu4727 or FT agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta FT scores: E(): 4.6e-09, 40% id in 95 aa" FT /protein_id="CAE36581.1" FT /translation="GRRVNSLPDVPTVAETLPGFDVTSFFALYAPTGTPPAAIAAINAA FT TNRALADPDLQRRFAEQGADPGPGTPRQLAALVRDEVVKWREVIVAGDIRLE" FT CDS <1380624..1381562 FT /transl_table=11 FT /locus_tag="BPP1280" FT /product="putative exported protein (partial)" FT /note="The N-terminal region of this CDS is deleted FT relative to its B. bronchiseptica orthologue. Similar to FT Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 FT SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): FT 1.7e-47, 45.17% id in 321 aa, and to Comamonas testosteroni FT OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta FT scores: E(): 2.4e-38, 37.5% id in 296 aa" FT /protein_id="CAE36582.1" FT /translation="VHAAAAPAAATDWTPDRPLRIVSPYAAAGTNDLLARLMAQKLGER FT LGKSIVVENRAGANGIIGAEYVAKMPGDGYTMLMGNSATHGINPNLYAKLSYDADKDFT FT LIGLIASVPLLLVVGPKVEADSLQDLIALSKSRPGQISFASSGVGSSPQLAGELFKSIS FT GLDIIHVPYKGDSPALTDVLGGQVTMMFANIPSALPMVRAGKLKALAMTGAARTSAAPE FT IPTMAEAGLPGVEISAWYGLMAPAGLPSPVLARLNTELNAVLQQPDVQTRIRELGAEPA FT QPGPPAQFQQFVDAELAKYGKVIKTAGIAPE" FT misc_feature 1380723..1381550 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 4.3e-111" FT CDS 1381691..1382944 FT /transl_table=11 FT /locus_tag="BPP1281" FT /product="putative acyl-CoA transferases/carnitine FT dehydratase" FT /note="Similar to Brucella melitensis predicted acyl-CoA FT transferases/carnitine dehydratase Bmei0898 SWALL:Q8YHA4 FT (EMBL:AE009530) (400 aa) fasta scores: E(): 1.9e-52, 39.42% FT id in 383 aa, and to Rhizobium meliloti putative conserved FT membrane-anchored protein Rb0848 or Smb21182 SWALL:Q92V66 FT (EMBL:AL603645) (394 aa) fasta scores: E(): 1.9e-54, 39.34% FT id in 394 aa" FT /protein_id="CAE36583.1" FT /translation="MSKGPLQGIRVLDFTRFLAGPYATMLMADLGADVVKIEEPGGDHT FT RTSGPYLDAATKDQDIGGFFNSLNRSKHGICIDLKSPGGRDLVLRMVKDVDVVVENFRG FT GVMEKYGLDYETLSRINPRLVYASVRGFGDRRTLGKHYPERPTVDLLVQAVSGIMGITG FT SADGQVYKIGPGVGDIFPGTMCLVGILAALQWRERSGEGQYVDTSMYDCMLSLCERMLY FT QHSYTGEIPGPMGNAHPFSAPYTMYPAADGNFVVAAPNDKFWRRIATAIGQPELGADPR FT FATRAARREHRGEIDDIMRAWSSVRKRDDVMAALLGHDVLAAPVNNAADIFADPEVRKR FT RMLVDIDPYPHAPRKVQVAGTPLKFTKTETQPQRRAPLVGEHTHDVLTRMFGLSAAEVA FT ALERDAIVSRREPESAGA" FT misc_feature 1381913..1382491 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 7e-64" FT CDS join(1382970..1383620,1383619..1384089) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1282" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1016 SWALL:Q9I4V7 (EMBL:AE004534) (383 aa) fasta FT scores: E(): 8.3e-34, 35.65% id in 359 aa, and to FT Mycobacterium tuberculosis hypothetical 40.6 kDa protein FT Ltp2 or Rv3540c or Mtcy03c7.16 or Mt3644 SWALL:P71861 FT (EMBL:Z82098) (386 aa) fasta scores: E(): 6.9e-28, 33.5% id FT in 379 aa" FT /db_xref="PSEUDO:CAE36584.1" FT CDS 1384113..1384529 FT /transl_table=11 FT /locus_tag="BPP1283" FT /product="conserved hypothetical protein" FT /note="Similar to Methanothermobacter thermautotrophicus FT conserved protein Mth1398 SWALL:O27449 (EMBL:AE000902) (133 FT aa) fasta scores: E(): 1.5e-06, 32.72% id in 110 aa, and to FT Methanopyrus kandleri AV19 predicted nucleic-acid-binding FT protein containing a zn-ribbon Mk1377 SWALL:AAM02590 FT (EMBL:AE010431) (134 aa) fasta scores: E(): 6.6e-10, 39.31% FT id in 117 aa" FT /protein_id="CAE36585.1" FT /translation="MTPGFPLPKPDVLSRPFWDFAQRGVLSLQRCRHCGDVHFPAAPVC FT PACLSEQQEWVPASGRGTLFSWCEFHKGYWDSVASLLPYRVAVIKLNEGPLLISNLVDV FT ADCAALRADAPVEVVFRPVSADINLPVFRLRHAY" FT misc_feature 1384146..1384520 FT /note="HMMPfam hit to PF01796, Domain of unknown function FT DUF35, score 4.1e-14" FT CDS 1384545..1385450 FT /transl_table=11 FT /locus_tag="BPP1284" FT /product="putative 2-pyrone-4,6-dicarboxylic acid FT hydrolase" FT /note="Similar to Pseudomonas paucimobilis FT 2-pyrone-4,6-dicarboxylic acid hydrolase LigI SWALL:O87170 FT (EMBL:AB015964) (293 aa) fasta scores: E(): 4.4e-34, 37.45% FT id in 275 aa, and to Yersinia pestis Orf45 ypo1933 FT SWALL:Q9ZC43 (EMBL:AL031866) (289 aa) fasta scores: E(): FT 5.4e-47, 44.64% id in 280 aa" FT /protein_id="CAE36586.1" FT /translation="MNASAEPLLESQEPLSAYTPPAFEVPPGACDTHAHIFGPVSRYPL FT DPKRTFNPPRAGIDDYRRLLSTLGLERAVIVHSGAYGTDISVTRDALLASEGKWRGIAL FT VDRDVTRDALADMHAAGFRGVRFNFIFGHRNEEDDVLEIARRIAEFGWHIQLLVDARTL FT PDLLPLIRRLPVMVVIDHIGRMPTSAGIGDPGFQALLGLLRERRCWVNLSGANRMGDPT FT PPYASVVPFAHALVDAGADHLVWGTDWPHVREPGAIPDDGGLLNLLQLWVPDRRLRNAI FT LSDNPARLYGFAPGGKEPQP" FT CDS 1385447..1386799 FT /transl_table=11 FT /locus_tag="BPP1285" FT /product="conserved hypothetical protein" FT /note="Similar to Bacillus subtilis hypothetical protein FT YxeQ or Lp9I SWALL:YXEQ_BACSU (SWALL:P54956) (445 aa) fasta FT scores: E(): 2.7e-32, 30.78% id in 432 aa, and to FT Agrobacterium tumefaciens hypothetical protein Atu3361 or FT Agr_l_2924 SWALL:AAL44174 (EMBL:AE009266) (448 aa) fasta FT scores: E(): 9.5e-32, 31.48% id in 397 aa" FT /protein_id="CAE36587.1" FT /translation="MTPTAIEKIAVFVAGFDPAGATLSARHVAARALYDTIAVAIAGAD FT EPASRLMMDYARGQSAPGMATVWATGDRLPVELAALVNGIMGHALDFDDVSSPLRGHPS FT VAIFPALMALGESRGVSGKALLDAYLAGFEVTIKLARAIVDDQYAKGWHSTPSIAAFGA FT TDACGRLLGLDAARIAHAMGILVSQVAGTRQNFGTMSKPFQAGQANVMALRAALLAELG FT FDASMSAMDGPHGYTVLYADGQDIHAQFDTLGQLPLEIDAAGIEVKKYPLCYATHRAIQ FT GILDLRKQQSLAFAEVERVEVKTNYRATVPLIYDRPQTGLEAKFSMHYAVAAALHDGAV FT NLASFEDAAVRRPAIQAFFEKVELSQGEPPMFPRWAEVVVHLRDGVSHRIRVEGLRGSA FT QFPLSDAELVEKGAACLAHGKVALSAERLARACFELDAAPLQALLEVLRSA" FT CDS 1386862..1388334 FT /transl_table=11 FT /gene="gabG" FT /locus_tag="BPP1286" FT /product="succinate-semialdehyde dehydrogenase [NADP+]" FT /EC_number="1.2.1.16" FT /note="Similar to Escherichia coli succinate-semialdehyde FT dehydrogenase [NADP+] GabD or B2661 SWALL:GABD_ECOLI FT (SWALL:P25526) (482 aa) fasta scores: E(): 2.6e-115, 61.61% FT id in 482 aa, and to Pseudomonas aeruginosa FT succinate-semialdehyde dehydrogenase GabD or Pa0265 FT SWALL:Q9I6M5 (EMBL:AE004464) (483 aa) fasta scores: E(): FT 2.6e-115, 61.57% id in 484 aa" FT /protein_id="CAE36588.1" FT /translation="MTISPLQLLNDPSLLRTDALVDGRWIAASQRFAVHDPATGRKLAD FT VANLDAAHAREAIAAAQAAWPAWRARTVKERSAILRKWFDLLLANQDDLARLLTAEQGK FT PFGEARGEIAYAASFVEWFAEEAKRINGETLPAFDNNRRLLVLREPIGVCAAITPWNFP FT LAMITRKVAPALAAGCPVIVKPAEHTPLTALAAAQLAVRAGVPAGVLGVLPADGANSIA FT IGKELCANDAVRHLSFTGSTEVGRILMAQSAATVKKLSLELGGNAPFIVFDDADLDSAV FT EGAMQSKYRNAGQTCVCANRIYVQDGVYDAFVEKLADAVRALKVGPGFDEGVTQGPLIE FT PEAVDKIERHIEDAVSKGGRVVAGGRRLGGLFFEPTVLVDATSQMLCAREETFGPLAPV FT FRFHADEDAIAAANATEFGLASYLYSRDVGRIFRAAEALESGMVGVNVGILATEHVPFG FT GVKQSGLGREGGRHGIDDYVEIKYMCVGDILK" FT misc_feature 1386931..1388322 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 2.3e-194" FT misc_feature 1387642..1387665 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT misc_feature 1387726..1387761 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS complement(join(1388327..1389022,1389026..1389253)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1287" FT /product="probable LysR-family transcription regulator FT (Pseudogene)" FT /note="Similar to Rhizobium sp syrm protein homolog 1 SyrM1 FT or Y4pN SWALL:SYR1_RHISN (SWALL:P55619) (338 aa) fasta FT scores: E(): 2.5e-26, 34.07% id in 314 aa, and to Ralstonia FT solanacearum probable transcription regulator protein FT Rsc2094 or Rs03659 SWALL:Q8XXL9 (EMBL:AL646068) (316 aa) FT fasta scores: E(): 1.2e-31, 36.6% id in 306 aa" FT /db_xref="PSEUDO:CAE36589.1" FT misc_feature complement(1388357..1388986) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.3e-22" FT misc_feature complement(1389059..1389238) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.9e-15" FT misc_feature complement(1389104..1389196) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS complement(1389326..1390387) FT /transl_table=11 FT /locus_tag="BPP1288" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium sp hypothetical 33.9 kDa FT protein Y4mH SWALL:Y4MH_RHISN (SWALL:P55567) (297 aa) fasta FT scores: E(): 5.8e-05, 31.92% id in 332 aa, and to FT Streptomyces coelicolor conserved hypothetical protein FT Sc9a4.22C SWALL:Q9FBT2 (EMBL:AL391072) (277 aa) fasta FT scores: E(): 0.00017, 29.63% id in 324 aa" FT /protein_id="CAE36590.1" FT /translation="MDIADPDAPPRYAPPEIPIRPGWLAMRREPVLEPGLPIVDAHHHL FT WDRPGQRYLFDELRADLQTGHNVLATVYVQCRSMYRCDGPAAMRPVGETEFANGVGAQS FT ASGLYGRLRACAGIVAYADLSLGAAVRPVLQAHLNAAPQRLRGIRCMTAAHASPHIQPN FT SGKVPEHLLMAPRFREGFAELAPLGLSYDAWAFHTQLHEVLDLARAFPQTVIVVDHAGG FT PLGIGPYAGRRDAVYAHWHAAMRALAACPNVNVKLGGLAMHFSGLDFHLLAEPPDSRQL FT AHAWRPYIEACIELFGAGRCMFESNFSVDKGMLSYAVLWNAFKRLAAQCSAQEKAQLFA FT GTARRVYRLPPQP" FT CDS 1390581..1391570 FT /transl_table=11 FT /locus_tag="BPP1289" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein Atu4727 or Agr_l_312 SWALL:AAK88723 (EMBL:AE009401) FT (329 aa) fasta scores: E(): 2.6e-39, 38.18% id in 330 aa, FT and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 4.4e-35, 36.92% FT id in 325 aa" FT /protein_id="CAE36591.1" FT /translation="MAFKQQLRGLLGSLACGVLLALQPAAAEPTYPSRPIRLIVPFAPG FT GTTDAVARAVATKLGQTLNQSIVVENRAGAGGSIGTDFVAKARPDGYTLLLGSAGPLSV FT NPTLYPNLPYDPTRDFTPVGMICTSALVLVTSSASGIASTADLIRQAKANPGSLTFSTA FT GVGGASHIAAELFASMAGIKATHVPYRGSGPATVAAVAGETSFTFTGQTAAWPMVQAGK FT LRALGVGSRERSAEHPEVPTVAESGPVPGYEALDWNVIMAPPGTPETVVRALSDGLDRI FT LDDPELRASFVQQGIAIRKGTAADVQALMRHDIAKWAKVIKEADIETQ" FT misc_feature 1390581..1390661 FT /note="Signal peptide predicted for BPP1289 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.775 between residues 27 and 28" FT misc_feature 1390731..1391558 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 5.1e-97" FT CDS 1391718..1392788 FT /transl_table=11 FT /locus_tag="BPP1290" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2607" FT /protein_id="CAE36592.1" FT /translation="MRHLLAGNQLRQSLLIAQPASVRVALVAGLQAGLAIFVALVSAHL FT SPWPHLVGFSALGGLAALFGRFASAQGRQRIVMVCGLLLVAGVLVPSLATYAGAGALSM FT VLLLALSAGLYTLAVWRWGLTGGPGAVIFVFAVGAALAPVDSAAAVMERTLATAWGALV FT AWLACALTDRLRPHGAVAMAAAPLPLLSLQLMVAGRIAVGAGAAALIIFWAGWQYPAWA FT AIGAAAVMQGTHLHLTMNRSLQRMAGTIVGACIVWAVLAQDPSFWTLVAAVVLCQVITE FT VTIGFNYALGQVTVTPMALLMTYMASPAPASNMPVERVVDTIVGAAIGIVFAVIFSTVD FT DRVHLARRYRKLRIWR" FT misc_feature join(1391778..1391846,1391856..1391924,1391943..1392011, FT 1392021..1392089,1392102..1392170,1392255..1392323, FT 1392336..1392404,1392462..1392530,1392567..1392635, FT 1392678..1392734) FT /note="10 probable transmembrane helices predicted for FT BPP1290 by TMHMM2.0 at aa 59-81, 85-107, 114-136, 140-162, FT 167-189, 218-240, 245-267, 287-309, 322-344 and 359-377" FT CDS complement(1392835..1394319) FT /transl_table=11 FT /locus_tag="BPP1291" FT /product="putative GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2599" FT /protein_id="CAE36593.1" FT /translation="MGQSGKPASRPSGPNGAGRRIYDLLRGQIADGTLAARAPLPSTRA FT LAAELGVSRTTVTAVYEQLAAEGFLDTAPGRAARLASPLAAPDPDATPASPPAGRPLTL FT SAWGRRVANIGTPAPLSHPPVRYDFLYGALASRDFPSLAWKRAYQQALQRPPHSLSYAP FT PEGEPALRRALQGYLRRARGIACEPGQILIVQGSQQAIDLCARLLLDAGDDFVFENPGY FT LMARHCFAATGARLLPVDVDEHGLDTEQLPDTARVRLAYVTPSHQFPLGGVLPIGRRRQ FT LLQWVRRHDAWIVEDDYDGEFRYGQRPIDALQSIDTDGRVIYVGTVSKALSPRLRLDYM FT VLPRHLVEVFRQAKRLADRHAPALDQQVLASLIDSSVYERHVRRMRRDNERRRTALLEA FT IARELPQGARVDGTAAGLHVVLWLPGLDARDEPALVATAREMGVGVYPLAPLHAPAGVG FT QAHRPAGLILGYASLDVEQIRQGIAILAAAIGRTKD" FT misc_feature complement(1394080..1394259) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 5.7e-11" FT misc_feature complement(1394128..1394202) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS 1394400..1395023 FT /transl_table=11 FT /locus_tag="BPP1292" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2598" FT /protein_id="CAE36594.1" FT /translation="MYLPAHFAETRPEELARIIRAHPLGMLVTQDAQGLDADHLPFEFD FT PDAGPHGTLIAHVARANTLWQRCPDGAAVMVVFRGAEGYISPNWYPSKHEAHRQVPTWN FT YEVVHAHGTLAVRDDERFVRGVVARLTRRHEAGESRPWKMTDSTPEYIDSMLRNIVGIE FT VAITSLVGKRKLSQNKDERDRLGAVQALQARGQDALAQSMARAE" FT CDS 1395054..1395665 FT /transl_table=11 FT /locus_tag="BPP1293" FT /product="putative membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2597" FT /protein_id="CAE36595.1" FT /translation="MSLLAFLLAAALLAITPGPGIAYVVARTVAGGRAEGLASCLGTAL FT GGLVHVLAAALGLSVLIAESALAFSLLKYAGAAYLVYLGLRMWLSPRPAAVRVVAPQGA FT RRALAEGVLVEALNVKTALFFLAFLPQFVDPGAPLAPQLALLGGICVTLNTLVDVMAVV FT AAHRLLRSEAARVARARVLTRVSGTTMVGLGVFLALARRD" FT misc_feature 1395054..1395119 FT /note="Signal peptide predicted for BPP1293 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.905 between residues 22 and 23" FT misc_feature join(1395063..1395131,1395168..1395236,1395264..1395323, FT 1395384..1395452,1395480..1395548,1395594..1395653) FT /note="6 probable transmembrane helices predicted for FT BPP1293 by TMHMM2.0 at aa 4-26, 39-61, 71-90, 111-133, FT 143-165 and 181-200" FT misc_feature 1395249..1395560 FT /note="HMMPfam hit to PF01810, LysE type translocator, FT score 2.5e-07" FT CDS 1395701..1396171 FT /transl_table=11 FT /locus_tag="BPP1294" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2596" FT /protein_id="CAE36596.1" FT /translation="MADKRTEGSGKGGAKAAGKGGLGEVVLLSGGNPQIAKGYGDAPVQ FT AYIAAMPGWKRAVGERLDAIVERTVPGVYKAVKWNSPFYGFEGEGWFLSFHCMTKYIKV FT AFFRGASLQPLPPGASKQKDVRYLDIYEDAPFDEARFADWVAQASRLPGERM" FT CDS 1396382..1397650 FT /transl_table=11 FT /locus_tag="BPP1295" FT /product="putative peptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2595" FT /protein_id="CAE36597.1" FT /translation="MREAMSKQAMLDAIEAEREVLIGFLQEFVRAASPNPPGDTRAAAA FT VIQGFLSARGVPNELLGPQESMPNVVSECEGGRAGPRLVYNGHMDVFPVGDGHGWTRDP FT WSGDIEEGRLHGRGTCDMKTGTAASVIAYAYLYARRAQLAGSVALTAVSDEETGGRWGT FT RWLLENDTRWRGDCVLNGEPSSLDTIRFSEKGTLRLKFEVLAAGAHGAYVHRSESPTRI FT AAALIGRLAEVEAIEPSLPAALKAHLQREDVRRALDVAMGEGAADVVTRTTLNVGVLNG FT GLKINMIPDRCVFEVDIRLPVGTEPDVVLARLEGILAEFPQASMEVQQWHSTPPNVCAH FT DHPMVDFIADNAQAIVGRRPVAVPSIGSTDCRYWRRSGVPAYVYGPAPGRMAMSNESVD FT LDEFIAVAKVHAAAGWDYLNGAA" FT misc_feature 1396454..1397485 FT /note="HMMPfam hit to PF01546, Peptidase family FT M20/M25/M40, score 1.4e-48" FT CDS 1397687..1399201 FT /transl_table=11 FT /locus_tag="BPP1296" FT /product="ABC transport protein, solute binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2594" FT /protein_id="CAE36598.1" FT /translation="MMSKTGKMAAALAALCLSVGLAGAARAESTLQVALFTSLNSLDPN FT VTTLGEEYVFNGLVFGGLTRIDANSKVVPDLAVSWTPSADLREWTFKLRPGVKFHHGKP FT LTASDVVFSFQRIVDPATGSPGRTQLEVMKSVDAPDDATVHFTLTQPYADFPGLLTGRQ FT LRVVAQDRIDTIKTQPSGTGPFRFVRYTPGDQLELERNPDYYDKDRIKIDRVVMRVMPE FT AAARVAALRSGSIDMIWNLPLETIPDLKKDAAVVVDSVPSASWDGIVLNNSKPPFNDVR FT VRRAVFLALDKKELVNFALFGEGSPTHSPIAPTDPAFNKDIGFAPDLAQAKQLLAEAGY FT AKGFAVDIFVPAGRPSRERLGVAAQQLLRPLGIKLNVQRVPYNRYSAGVAGIAPMYVDG FT FFASPVIDAATSPWFYSTGSWNARMWHFSSKRVDQALDAARASTDRAEQIRHYQDFQRA FT LTEEVPGVIGYVTNVATAYRADIKNYHTNPFLWLDLYDVEKTGGAR" FT misc_feature 1397687..1397767 FT /note="Signal peptide predicted for BPP1296 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.916 between residues 27 and 28" FT misc_feature 1397708..1399183 FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5, score 1.3e-72" FT misc_feature 1399115..1399165 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT CDS 1399205..1400164 FT /transl_table=11 FT /locus_tag="BPP1297" FT /product="ABC transport protein inner membrane component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2593" FT /protein_id="CAE36599.1" FT /translation="MWAYLVRRLGHVVFVVAAMAVLIFLITQAMPGNVAYTIAGHFASP FT EQVAAIEARLGLNDPLWTQFWRWAGAALHGDMGQSLVMGRPVGPLISAALGRSALLAVA FT ALVLTAALGIFLGVVAAVRHGRWQDRLILAFSWLSISLPQFLIAIVLVLLVAGTLGWLP FT ATGYVELSAGFGAWLSHLVMPVCTLVLGLVAHVTSLQRSSMLETLSAPYVRAARAKGLR FT ERTVLYRHALRNALIPTVTVLALDFGILMGGIVVVETVFSYPGLGRLLIFAVEQKDLPV FT LQAGVLAVTVIYALANLAADIAYAILDPRIRYGNLDTH" FT misc_feature 1399205..1399291 FT /note="Signal peptide predicted for BPP1297 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.903) with cleavage site FT probability 0.836 between residues 29 and 30" FT misc_feature join(1399229..1399297,1399502..1399570,1399607..1399675, FT 1399718..1399786,1399907..1399975,1400057..1400125) FT /note="6 probable transmembrane helices predicted for FT BPP1297 by TMHMM2.0 at aa 9-31, 100-122, 135-157, 172-194, FT 235-257 and 285-307" FT misc_feature 1399814..1400047 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.9e-06" FT misc_feature 1399817..1399903 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS join(1400193..1400684,1400683..1400994) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1298" FT /product="ABC transport protein inner membrane component FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2592" FT /db_xref="PSEUDO:CAE36600.1" FT misc_feature 1400193..1400249 FT /note="Signal peptide predicted for BPP1298 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.927) with cleavage site FT probability 0.886 between residues 19 and 20" FT misc_feature join(1400196..1400264,1400397..1400465,1400484..1400552, FT 1400580..1400633,1400754..1400822,1400880..1400948) FT /note="6 probable transmembrane helices predicted for FT BPP1298 by TMHMM2.0 at aa 2-24, 69-91, 98-120, 130-147, FT 188-210 and 230-252" FT misc_feature join(1400637..1400684,1400683..1400865) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.0062" FT variation 1400676..1400683 FT /note="(CG)4 in parapertusis; (CG)5 in pertussis" FT CDS 1400996..1402630 FT /transl_table=11 FT /locus_tag="BPP1299" FT /product="ABC transport protein, ATP-binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2591" FT /protein_id="CAE36601.1" FT /translation="MHQDTILNIKGLEVRYGRNQVLHGVDLELPRGASLGIVGESGSGK FT STIAWTVLGLLPPGAAVTAGSVAFDGEDITGERAAGLRGDRIAMVFQDPFTALNPSLPV FT GRQITEALVERGRADARSARAEALRLMDEVRLPRASTLLDAYPHQLSGGMKQRIVIATA FT LACSPDLLLLDEPTTALDVTVEARILDLLDELRVQRGLSMVFISHNIGLVERMCSRVTV FT MHGGRVQEAGAAQQVLWHPAHAYTRKLLAALPLLEKRAPAVPAVGAPIARVRDVRLTFR FT PAHPLGGWARLLRLPRAEGVAALAGVSLELRPREVVGLVGESGSGKSTLGRCLVGLQAP FT DAGTVELSDHDVYRASPEVARRLRRQSQMVFQNPDSSLNPRQRVGEVLRRLLQLMGLDR FT RQQDRRMDELLDLVRLPAAYAERYPHQLSGGEKQRVGIARTLALEPSVLVCDEATSALD FT VSVQASILELLKDLRDRLGVAMLFISHDLAVVSQISDRVVVMRHGAIVEQGRTDQVLSA FT PAHEYTRLLLDSVPAFVARRAREAAVA" FT misc_feature 1401089..1401673 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.9e-57" FT misc_feature 1401110..1401133 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1401443..1401487 FT /note="PS00211 ABC transporters family signature." FT misc_feature 1401935..1402504 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 4.2e-62" FT misc_feature 1401956..1401979 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1402274..1402318 FT /note="PS00211 ABC transporters family signature." FT CDS 1402714..1403775 FT /transl_table=11 FT /locus_tag="BPP1300" FT /product="putative LacI-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2590" FT /protein_id="CAE36602.1" FT /translation="MTTKATGNRKVVKIVDVAKAANVSPAVVSRILSNDSKLVVREETR FT ARVQQAIEALGYTPNLQARGLRLSRSNTLAMIVPELNSPVFPVIIQGAQRAAWERGYSL FT LVGGMGGEEEDPKVAGRLLRSNRIDGLLVTTGRHEAQMLQELATLNAPFVLVNRYLDDQ FT HPYVELDERGAAAAITRHFIELGHRRIAFLGGLQRRVGERRVAGYADALAEAGLPWVPQ FT LVVDAGYYKPGGEDGLRQLLALDEPPTAVVATNEIVAAGAMAAAHRQGVRIPRDLSIAS FT FSDGIVAELLSPALTAVRFPLERMGYLATAMLVDIVEGRGAPQAGLCLPHESVVVRDST FT ARPPGRKARAATR" FT misc_feature 1402741..1402824 FT /note="HMMPfam hit to PF00356, Bacterial regulatory FT proteins, lacI family, score 2.1e-05" FT misc_feature 1402924..1403724 FT /note="HMMPfam hit to PF00532, Periplasmic binding proteins FT and sugar binding domain of the LacI family, score 6.7e-23" FT CDS 1404247..1404771 FT /transl_table=11 FT /locus_tag="BPP1301" FT /product="putative DNA-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2589" FT /protein_id="CAE36603.1" FT /translation="MEYLFTLKYQLADADSDLDPLVERLGQAGCDDALVGMGLPGRLAL FT EFTREADSAEAAVRSALADVRRAMPTAALIEAAPDLVGLTDVAQIVGVSRQNMRKLMLA FT HPATFPAPIHEGSASLWHLADVLGWLQARGGYPLAQATLDVARMALKVNVAKEARRLPR FT SAGAGLDALVG" FT CDS complement(1404780..1405238) FT /transl_table=11 FT /locus_tag="BPP1302" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2588" FT /protein_id="CAE36604.1" FT /translation="MDIAEVARRTGVPASTLRYYDKVGLIAPVSPPGARRRYAPAVLEQ FT LALVALGQAGGLSLDDIRAMLSPQGAPRVDRQVLLAKAEEIDATVKQLQAMSRGLRHAA FT ACPAPSHAQCPTFRRLLKAAAAGALSRRRPASTGVAPRSPRKRAPARP" FT misc_feature complement(1405125..1405229) FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT proteins, merR family, score 1.5e-07" FT CDS 1405322..1405816 FT /transl_table=11 FT /locus_tag="BPP1303" FT /product="putative membrane protein" FT /note="Similar to Brucella melitensis hypothetical membrane FT spanning protein Bmeii0616 SWALL:Q8YCB6 (EMBL:AE009697) FT (162 aa) fasta scores: E(): 8.1e-18, 39.1% id in 156 aa, FT and to Rhizobium loti hypothetical protein Mll7507 FT SWALL:Q985V9 (EMBL:AP003012) (167 aa) fasta scores: E(): FT 1.7e-17, 39.49% id in 157 aa" FT /protein_id="CAE36605.1" FT /translation="MAPQEMLARVVLVGMGATAVMDVWTMALRRLGVPVLDYALAGRWA FT GHWRHGRFAHADIRQAPAVRGEAALGWGLHYATGVLFAGLLVGVAGQAWLRAPSPGPAL FT AVGVATVLLPWFVMQPALGAGLASSRTPTPLRNCLRSVLVHAVFGLGLYLAGLALAWIG FT R" FT misc_feature join(1405340..1405405,1405526..1405594,1405631..1405699, FT 1405742..1405810) FT /note="4 probable transmembrane helices predicted for FT BPP1303 by TMHMM2.0 at aa 7-28, 69-91, 104-126 and 141-163" FT CDS complement(1405857..1407011) FT /transl_table=11 FT /locus_tag="BPP1304" FT /product="conserved hypothetical protein" FT /note="Similar to Thermoplasma volcanium L-carnitine FT dehydratase Tv1186 or Tvg1215416 SWALL:Q979H5 FT (EMBL:AP000995) (399 aa) fasta scores: E(): 1.6e-53, 39.08% FT id in 371 aa, and to Rhizobium meliloti putative conserved FT membrane-anchored protein Rb0848 or Smb21182 SWALL:Q92V66 FT (EMBL:AL603645) (394 aa) fasta scores: E(): 3.5e-50, 37.83% FT id in 378 aa" FT /protein_id="CAE36606.1" FT /translation="MTGALQGLRVLDMGQWIAAPYCTAMLADFGAEVIKIEKPGGGDDQ FT RHSSPFVDGQSAFFNLFNRNKHSVTIDLSTPAGRAQCRDLIGSADVLVENYRPGVMARL FT GLDYATLHAEFPRLVYCSISGFGQSGPMRGEGGFDLVIQAMSGLAAQCGPTDGPAHRLP FT IPIVDVSTALFATIGVLTALAARQQTGTGQLVDVALLDSALAMAPLEVADYLATGHNPE FT RMGQASRNAAPYQIFRTQDGAIALGAASQGLWEKTCDLLDRPALKNDPRFADNTARLAH FT RAVLAELVEQALATQPSEHWLARLREAGIPAGPVLSYADILRHPQVAAREMVRRPETAG FT AATAATLASPIRLSDTPARFVSGAPALGAHNGLLASGTRTGPPA" FT misc_feature complement(1406241..1406807) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.5e-60" FT CDS complement(1407008..1407874) FT /transl_table=11 FT /locus_tag="BPP1305" FT /product="putative (R)-specific enoyl-CoA hydratase" FT /note="Similar to Pseudomonas aeruginosa (R)-specific FT enoyl-CoA hydratase Phaj2 or Pa1018 SWALL:Q9LBK1 FT (EMBL:AB040026) (288 aa) fasta scores: E(): 2.7e-41, 43.55% FT id in 287 aa, and to Mycobacterium tuberculosis FT hypothetical 30.2 kDa protein Ufaa2 or Rv3538 or Mt3642 or FT Mtcy03c7.18C SWALL:P71863 (EMBL:Z82098) (286 aa) fasta FT scores: E(): 8.9e-30, 38.94% id in 285 aa" FT /protein_id="CAE36607.1" FT /translation="MNVQALLAHEFPVETQSYGARDCSLYALSAGYGQDPMDERQLQYV FT YGDAPKTAGGMALVLANPGFWQRQPWTGIDWARCVLGEQRIATHRPLPAAGRIASQLRV FT TRITDKGRQFGAMLHAERTLHDADNGTHYATLSMVTICRGDGGFGGPPDDSTRLPAVPA FT RAPDIQTEQPTLPQQALLFDLHGIVNPVHSWPAAARQAGYPRPFLHGVCLMGLVQHAIA FT RELAAYDTDGIATLSARFRGVFYPGETLLLSLWRDGDQVRYEAHAKERSTLAVEGSARL FT QPAGAVQ" FT misc_feature complement(1407041..1407406) FT /note="HMMPfam hit to PF01575, MaoC like domain, score FT 1.5e-11" FT CDS complement(1407888..1408856) FT /transl_table=11 FT /locus_tag="BPP1306" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 2.4e-48, 44.89% id in 323 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 9.3e-39, 38.31% FT id in 321 aa" FT /protein_id="CAE36608.1" FT /translation="MFCRKLALALGMAVSALSAGAAAAPYPAEPVRLVVPYAPGGTTDL FT LARLIASKLSAKYERQVVVENKTGAGGNIAAGFLARSRPDGYTLMMASIGQFAINPLIF FT SAPGYDAAKDFQPVIQVTRVPNVLVVNAASKLDSLQDLIKLAQAQPSVTYASSGNGSSN FT HLAGALLAHMANIDMLHIPYKGSAPGLQALYGGDVQVMFDNLSSALPHVQGGKLRALGV FT SSETRFSKLPDVPTIAESGLPGYEASAWFGLVAPAGTPAAIVEQLNRDVAAVLADNDVR FT SKLLEMGMTPQGGSVAQFQAVIDADIQKWKPIVQSLNLAVN" FT misc_feature complement(1407900..1408721) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3.6e-109" FT misc_feature complement(1408788..1408856) FT /note="Signal peptide predicted for BPP1306 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.848 between residues 23 and 24" FT CDS complement(1408882..1409625) FT /transl_table=11 FT /locus_tag="BPP1307" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Deinococcus radiodurans transcriptional FT regulator, GntR family Dra0211 SWALL:Q9RYU6 (EMBL:AE001863) FT (279 aa) fasta scores: E(): 3e-12, 32.91% id in 237 aa, and FT to Ralstonia solanacearum putative DNA-binding FT transcriptional regulator Rsp0079 or Rs05542 SWALL:Q8XTM7 FT (EMBL:AL646076) (273 aa) fasta scores: E(): 5.5e-11, 30.9% FT id in 220 aa" FT /protein_id="CAE36609.1" FT /translation="MATVKDDLLASGSNKRYVNLAHLLRMRIRAGDYRPGDRLPAIDQL FT ARQFNTAVVTARQALALLERNGLVQRRQGVGTFVLDDAVAPVGLELPLDQDWSGIRALW FT GASQVRILAERDRVECPADYAQHGQPADAYFYMRRVHEAQGIPYTVADIYIDREVYRKA FT PKRFRHEIALHVLPQLLPQRKLEAFEMIQVDAADVELAKWLDIAVGAPVVIMKRVVRDE FT SGRIIYAGTPVYRGDIVRLDRTFKL" FT misc_feature complement(1409389..1409568) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.7e-18" FT CDS complement(1409807..1410796) FT /transl_table=11 FT /locus_tag="BPP1308" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 1.5e-43, 42.03% id in 314 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 9.3e-40, 39.51% FT id in 329 aa" FT /protein_id="CAE36610.1" FT /translation="MQPRLTALHSALAALALCLPAGQAHAQADAAYPARPITLIVPFSA FT GGGSDVVARILATGLGSQLKQTVIVENRTGAAGNIGAEAVARARPDGYTLLFGSMGVMS FT VNSHLYRNMPLQPERDLAPVGRIYDTPHVIVVGQQSTLKSLPQLIEQAKARPDALTYAS FT AGNGTSTHLVGALFMHETGTRLMHVPYKGNAPALNDTMAGHVDMMFDQATNSTGQIQAA FT RLRALAATSHARIPDLPDVPTVAELGYPELEVTSWTVLAAPKATPAAAMATLSTALKKT FT LADPAIKEKIRQTGGVINYQDLPSTTEFVNRETARWGALIQSAGITAN" FT misc_feature complement(1409819..1410643) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1e-114" FT misc_feature complement(1410719..1410796) FT /note="Signal peptide predicted for BPP1308 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 26 and 27" FT CDS complement(1410832..1411902) FT /transl_table=11 FT /locus_tag="BPP1309" FT /product="putative malate/L-lactate dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT oxidoreductase Pa1252 SWALL:YC52_PSEAE (SWALL:Q9I492) (334 FT aa) fasta scores: E(): 3.1e-38, 39.03% id in 333 aa, and to FT Agrobacterium tumefaciens malate dehydrogenase Mdh or FT Atu0164 or Agr_c_268 SWALL:AAL41188 (EMBL:AE008990) (346 FT aa) fasta scores: E(): 3.4e-37, 36.73% id in 343 aa" FT /protein_id="CAE36611.1" FT /translation="MTISPAASHDELAGHLARCADTGAPCRLSADQLAALLARLFERAG FT ASAATAAVLAQTCALAEQDEARSHGLHRVAGYVATLGTDWVDGHAEPAVIDASGATIIV FT DARNGFAQCALRAARPLIEERVRQHGLAVLLTRNSHHFGALWLDVEPYARQQWIALTAV FT NSISHMAPHGGTTPLYGTNPMAFACPRAGADPLVFDQASSVMAKGDVQLAAQHGHTLPP FT DAGVDRHGQPTRDPAAVLDGGALLPFGGHKGSAIAMMVEVLAAALTGGSFSWEVDRSAH FT PTAQTSRTGQFFLCIDPARSAGHGFAARIDQLAQALLRSGQQRLPGERRYAARRLAAQH FT GIAIDPAALLALLRLA" FT misc_feature complement(1410838..1411827) FT /note="HMMPfam hit to PF02615, Malate/L-lactate FT dehydrogenase, score 7.9e-51" FT CDS complement(1411914..1413104) FT /transl_table=11 FT /locus_tag="BPP1310" FT /product="putative FAD dependent oxidoreductase" FT /note="Similar to Ralstonia solanacearum hypothetical FT transmembrane protein Rsp1590 or Rs02147 SWALL:Q8XPP8 FT (EMBL:AL646085) (398 aa) fasta scores: E(): 6.5e-50, 37.72% FT id in 387 aa, and to Rhizobium loti hypothetical protein FT Mll4416 SWALL:Q98E45 (EMBL:AP003004) (388 aa) fasta scores: FT E(): 2e-42, 34.52% id in 391 aa" FT /protein_id="CAE36612.1" FT /translation="MQAMNQPQVQQYDIVIIGGGIIGSSVAYHVLARDPAARVCVVEPD FT PSYEFASALRSSGGCRVQFTCPENIAMSLYSLDVIKNFENTMAANGRPAPVDWVQGGYL FT FLVPPERVAMLERNVARQQAMGCQVDLLTPAELKARFPSIHVDDLGAGAHTPQDGWCDP FT NGLLWGFRRKAVELGAVYLKDRVVAADVTPARARRVTLESGAQLDAEAFVNAAGAWSGQ FT VAELFGMHLPVVPMRRFEHYFTCGNPIEPLPYVKDLSRLAFRSEGRGFSGGLVNGDENR FT GFNFDVDHDYFENVVWPAVAHHFPPLEAAKCHRTWSGLYEQNELDGNPVIGAWNVRLKN FT LYTVAGFSGHGMMHAPAAGRGIAELLVHGAFQSLDLSKLGYERVQASQPYREEGIL" FT misc_feature complement(1411992..1413071) FT /note="HMMPfam hit to PF01266, FAD dependent FT oxidoreductase, score 0.0055" FT CDS 1413216..1414010 FT /transl_table=11 FT /gene="proC" FT /locus_tag="BPP1311" FT /product="pyrroline-5-carboxylate reductase" FT /EC_number="1.5.1.2" FT /note="Similar to Pseudomonas aeruginosa FT pyrroline-5-carboxylate reductase ProC or Pa0393 FT SWALL:PROC_PSEAE (SWALL:P22008) (272 aa) fasta scores: E(): FT 1.2e-27, 45.45% id in 264 aa, and to Caulobacter crescentus FT pyrroline-5-carboxylate reductase Cc0494 SWALL:Q9AAU9 FT (EMBL:AE005722) (260 aa) fasta scores: E(): 1.2e-23, 43.56% FT id in 264 aa" FT /protein_id="CAE36613.1" FT /translation="MRQALFLGYGRMGAALGEAWLRAGLLAGIDAVDPGRDGAGLRARL FT VRGADELPEQAYDLVVLAVKPAMAQQALRPVPPARLARACLVSIMAGVPAGALRQALQP FT PRPVARAMPNTPVMAGQGCTGLYGGDDVAPAQRAAIGRLFEAVGAAFWVDTEDQLHAVT FT ALSGSGPAYYHLFSEALAQAGEQLGLPAALARSLAARTALGAASLQCEEGADFAALRRE FT VTSPHGTTHAAIEVFEQAGALRTLVRDAVRQAQARSRELARP" FT misc_feature 1413216..1413950 FT /note="HMMPfam hit to PF01089, Delta FT 1-pyrroline-5-carboxylate reductase, score 4.9e-54" FT CDS complement(1414026..1414679) FT /transl_table=11 FT /locus_tag="BPP1312" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1269 SWALL:Q9I475 FT (EMBL:AE004556) (222 aa) fasta scores: E(): 6.3e-24, 41.17% FT id in 204 aa, and to Rhizobium loti transcriptional FT regulator Mlr7144 SWALL:Q986Z8 (EMBL:AP003011) (253 aa) FT fasta scores: E(): 1.9e-18, 37.43% id in 203 aa" FT /protein_id="CAE36614.1" FT /translation="MTNANAGPLTLTADGVTDELRALILDGSLGIGVQLKQEVLAKRFG FT VSRIPVREALKRLEAEGLVTHAPHQGSVVASRSVQELLETLDIRVGLESRALVLAIPHM FT TPAVFKEAETIIARYDASEFPREWSELNLEFHMCLYRPSGRPRLLKTIENLVRGIDIHL FT RAHQSYAVGRKSPQNEHRAILDACIAGKAKRARDLLEAHIEHTQDVLRKEHGLI" FT misc_feature complement(1414458..1414634) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 2.7e-12" FT CDS 1414900..1415376 FT /transl_table=11 FT /locus_tag="BPP1313" FT /product="putative phage-related protein" FT /note="Similar to Bacteriophage T4 hypothetical 17.1 kDa FT protein in gp30-riiI intergenic region Y12g or 30.3 FT SWALL:Y12G_BPT4 (SWALL:P32276) (152 aa) fasta scores: E(): FT 6.3e-07, 32.66% id in 150 aa, and to Bacteriophage RB69 FT Gp30.3 30.3 SWALL:CAD28421 (EMBL:AJ439452) (137 aa) fasta FT scores: E(): 5.1e-06, 33.62% id in 113 aa" FT /protein_id="CAE36615.1" FT /translation="MNSASRLNISSTSDDWRGLALSNFPLSPFVLDGELFASVEGFIQG FT IKFREDDPRRATAFLSSGWDAKHLGDTVDRSGAYWGGARIRYGSAEHHQLIERAIRARI FT KQCEGLRRTLRATEGMTLVHDTGKPEAPHTSLPATVFCRILETLRREILARARP" FT CDS complement(join(1415386..1415928,1415927..1416853)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1314" FT /product="probable outer membrane efflux protein FT (Pseudogene)" FT /note="Similar to Pseudomonas putida TrpC SWALL:AAL95702 FT (EMBL:AF360362) (484 aa) fasta scores: E(): 8.5e-47, 40.2% FT id in 490 aa, and to Pseudomonas aeruginosa probable outer FT membrane protein Pa2837 SWALL:Q9I006 (EMBL:AE004710) (479 FT aa) fasta scores: E(): 7e-54, 42.85% id in 490 aa" FT /db_xref="PSEUDO:CAE36616.1" FT misc_feature complement(join(1415394..1415928,1415927..1415938)) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 4.1e-25" FT misc_feature complement(1415993..1416643) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 2.7e-22" FT misc_feature complement(1416788..1416853) FT /note="Signal peptide predicted for BPP1314 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.629 between residues 22 and 23" FT misc_feature complement(1416806..1416838) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(join(1416868..1417053,1417056..1417970)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1315" FT /product="putative membrane protein (Pseudogene)" FT /note="Similar to Salmonella typhi putative inner membrane FT protein Sty0850 SWALL:Q8Z881 (EMBL:AL627268) (368 aa) fasta FT scores: E(): 1.2e-51, 42.12% id in 368 aa, and to FT Escherichia coli hypothetical protein YbhR or B0792 or FT Z1012 or Ecs0870 SWALL:YBHR_ECOLI (SWALL:P75774) (368 aa) FT fasta scores: E(): 1e-51, 41.03% id in 368 aa" FT /db_xref="PSEUDO:CAE36617.1" FT misc_feature complement(join(1416888..1416953,1417059..1417124, FT 1417146..1417211,1417257..1417322,1417386..1417451)) FT /note="5 probable transmembrane helices predicted for FT BPP1315 by TMHMM2.0 at aa 180-202, 223-245, 260-282, FT 289-311 and 346-368" FT CDS complement(1417998..1419137) FT /transl_table=11 FT /locus_tag="BPP1316" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti putative ABC FT transporter permease protein Rb0871 or Smb21205 FT SWALL:Q92V46 (EMBL:AL603645) (384 aa) fasta scores: E(): FT 3.7e-57, 45.23% id in 367 aa, and to uncultured bacterium FT pCosFS1 ElsD SWALL:Q9APR7 (EMBL:AF250767) (384 aa) fasta FT scores: E(): 2.4e-50, 40.1% id in 374 aa" FT /protein_id="CAE36618.1" FT /translation="MSPRAGAGGFWPRLASLVRKEFRQLLRDRSNLAIGLVLPILLILI FT FGYGLSLDLRNAPIAVVLEDRSPQARDALAGLAGSDYLAPVWLADMHSAETLMRRHEVE FT GIVRVPADFARRLAAGDAQVQLLLHGADANSAAALARYVDGALGHAARLRADRAGHAAP FT PPGVTMVERLWFNAANTSTWYLVPGLIALIMTLVGAFLTALVVAREWERGTLEALFVTP FT VRPTEILLAKMIPYFVVGMLELGLCLAAARLLFHVPLQGSLAVLLLSAMLYLVVALGIG FT LLISATTRNQFLASQVAVLSSFLPALMLSGFLFDLRNVPAAIRFVGSLLPATYFMELVK FT TAFLAGDNWPLIARNCAILAVYAVALLALARRLTRKSLD" FT misc_feature complement(join(1418028..1418084,1418196..1418261, FT 1418283..1418348,1418388..1418453,1418517..1418582, FT 1418982..1419047)) FT /note="6 probable transmembrane helices predicted for FT BPP1316 by TMHMM2.0 at aa 30-52, 185-207, 228-250, 263-285, FT 292-314 and 351-370" FT CDS complement(join(1419134..1419721,1419723..1420883)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1317" FT /product="probable ABC transporter ATP-binding protein FT (Pseudogene)" FT /note="Similar to Salmonella typhi hypothetical ABC FT transporter ATP-binding protein YbhF or Sty0852 FT SWALL:Q8Z880 (EMBL:AL627268) (578 aa) fasta scores: E(): FT 1.3e-74, 47.33% id in 581 aa, and to Rhizobium meliloti FT putative ABC transporter ATP-binding protein, consisting of FT 2 fused ATP-binding domains Rb0872 or Smb21206 SWALL:Q92V45 FT (EMBL:AL603645) (582 aa) fasta scores: E(): 4.6e-69, 49.65% FT id in 584 aa" FT /db_xref="PSEUDO:CAE36619.1" FT misc_feature complement(join(1419263..1419721,1419723..1419794)) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.1e-48" FT misc_feature complement(1419750..1419773) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1420245..1420790) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.5e-57" FT misc_feature complement(1420428..1420472) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1420746..1420769) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1420880..1421893) FT /transl_table=11 FT /locus_tag="BPP1318" FT /product="putative HlyD-family secretion protein" FT /note="Similar to Thiobacillus ferrooxidans hypothetical FT protein in asrC 5'region SWALL:Q9L9D4 (EMBL:AF173880) (338 FT aa) fasta scores: E(): 2.4e-41, 46.36% id in 330 aa, and to FT Rhizobium meliloti hypothetical membrane protein Rb0873 or FT Smb21207 SWALL:Q92V44 (EMBL:AL603645) (334 aa) fasta FT scores: E(): 2.3e-38, 44.24% id in 339 aa" FT /protein_id="CAE36620.1" FT /translation="MKKPLIAAAAAIALAIAGAAWWLTRAQPPDDILTLYGNVDIRQVA FT LAFDNSERIADMQVEEGDRVRAGQVLARQETRTLQLEAERAQARASAQEQALLRLRNGS FT RPQEIAQARARADAATADAALAQQDLQRLQGTARATDGRAVSRQDIDRAAARLRVARAQ FT AETQAKALQLALLGPRDEDIAEAAAQWQASLAELALLRHRLAQAELKAPTDAVVRARLL FT EPGDMASPQRPVYTLALTEPKWVRAYLSEPDLGRVRPGMRARVYTDSQPDRAIDGQVGY FT ISSVAEFTPKTVQTETLRTSLVYEIRIRVDDPQDRLRLGMPATVRLDLADAAEPGA" FT misc_feature complement(1420913..1421770) FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein, score 0.00076" FT misc_feature complement(1421273..1421317) FT /note="PS00579 Ribosomal protein L29 signature." FT misc_feature complement(1421822..1421878) FT /note="1 probable transmembrane helix predicted for BPP1318 FT by TMHMM2.0 at aa 5-24" FT misc_feature complement(1421837..1421893) FT /note="Signal peptide predicted for BPP1318 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.669 between residues 19 and 20" FT CDS 1422012..1422659 FT /transl_table=11 FT /locus_tag="BPP1319" FT /product="putative TetR-family transcriptional regulator" FT /note="Similar to Pseudomonas fluorescens PhlH SWALL:Q9RF00 FT (EMBL:AF207529) (223 aa) fasta scores: E(): 5e-29, 43.75% FT id in 208 aa, and to Rhizobium meliloti putative FT transcriptional regulator, TetR family protein Rb0874 or FT Smb21208 SWALL:Q92V43 (EMBL:AL603645) (225 aa) fasta FT scores: E(): 6.7e-05, 25.11% id in 227 aa" FT /protein_id="CAE36621.1" FT /translation="MTRPRRSLRADGASTRARILEAAGQLFGQYGYAGVASKAICAAAG FT ADLAAINYHFGSRDGLYRAVLVEGHKHFINLDTLTALTQSDLSPREKLCAFIDGMVAGL FT WEQDWHTRVCAREVLAPSAHFAALIDEEVLPKFRLVAGILGDITGFAPGDPALARCAVS FT IVAPCMMLMVVDRNAPSPPQQVLAQPAADLAEHLKRFALAGLDAVSAAAPRR" FT misc_feature 1422066..1422206 FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 4.8e-11" FT CDS 1422719..1424479 FT /transl_table=11 FT /locus_tag="BPP1320" FT /product="hypothetical protein" FT /note="No significant database matches" FT /protein_id="CAE36622.1" FT /translation="MAKEAYTVGPVLSFRGVGGARQWRVSALIGVPRTAKAPALRVEGR FT ACAAPVVLHQTARETFLRYDLSCDMQARERKVEFGPRGGPAWHFTVPAKGAAPRLAYVS FT CNGFSDPSGMRKLVRPENAVWADLLCNHDRDLRPADYLLDKEQLWHETRTHDEGLQRFH FT LLLMGGDQIYFDSIWEYIAALKQWVGLARAQQLEFKVSQALEDEIEAYYFGLYSRRWLP FT PSRAPWAGAQPSLDAADAMARVPTIMMWDDHDIFDGWGSYSPAMQRCELFQTLFRHARR FT AFWVFQMQHALADLPPLQAIARANVLPQDPQYEGIAWSRQLKRDRLALPLLDGQPGFTS FT AYRLGPLALVAADLRTERSRTQILGTQAWTALQGWLHGLKGNRPASATGGCRHLIFMSS FT VPVAHLKLSLAEGLLDTFGQDHVLDSNADDLKDHWSHDDHEGERKRLLETLMQVANEKL FT LRVSIASGDVHVAAWGNAYRRDIPPTSNWAQIQQFTSSAVVHPSLLGVAERLFLFMLNG FT TAAQAQPIDVNLSVEMMLFPGHNRYVMPARNWLAFELDAGKAGKLWASWRCETETGFSN FT HLQAVQPAQG" FT misc_feature 1423877..1423909 FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT CDS complement(1424480..1425325) FT /transl_table=11 FT /locus_tag="BPP1321" FT /product="putative aldo/keto reductase-family protein" FT /note="Similar to Rhizobium meliloti putative FT oxidoreductase protein R02112 or Smc01429 SWALL:Q92NR7 FT (EMBL:AL591789) (281 aa) fasta scores: E(): 1.2e-47, 54.21% FT id in 273 aa, and to Agrobacterium tumefaciens aldo/keto FT reductase Atu2032 or Agr_c_3682 SWALL:AAL43024 FT (EMBL:AE009154) (281 aa) fasta scores: E(): 1.5e-45, 51.47% FT id in 272 aa" FT /protein_id="CAE36623.1" FT /translation="MKQHRFGATDRIVAAIGQGTWNLDNSARASAVDALRNGLDLGMAH FT IDTAEMYGAGAAERLVGEAIAGRRDQVFLVSKVLPENASRAGTRAACERSLRRLGTDHL FT DCYLLHWRGAHPLEETFAAFDALQREGKIRSYGVSNFDVDDLQEAQDIVGPGKLACNQV FT LYHLRERAIEHAVMPWCAAHGVAVVAYSPFGHDDFPAPASAGGRVLARIAQAHGATPRQ FT IALAFLTRQPGVFAIPKAADPAHVAANAAAGRLALSEQDCADLDAAFERGPRPASLPMI FT " FT misc_feature complement(1424510..1425304) FT /note="HMMPfam hit to PF00248, Aldo/keto reductase family, FT score 1.2e-64" FT CDS complement(1425368..1427236) FT /transl_table=11 FT /locus_tag="BPP1322" FT /product="putative sigma-54-dependent transcriptional FT regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2158" FT /protein_id="CAE36624.1" FT /translation="MPGYQLSASGQHLPSTQAAAPIVRSWERCASATADLHDDPVALRH FT GDLQERLEQHACVLRAAQPEIETLAGMVASASSLVLLADASGVILQASGNTGFLQRADH FT MALRPGVSWAENHRGTNAIGTALIEAAALRVHGAEHFLRRNQILSCHAAPIRSPRGDIL FT GVLDISGDAGRMHAYALSLASMCARQVANRVIEQAGERCLYLVFHKQASLLDSVERGLL FT LIEDERIVGANDAAVALLGATWPALLDQPLDGWLVDWRAVARTPGRVHTPQGAPFHAVL FT RQGGHARSLPAPPRPPRAVPAQAPEETLPALAPALQAGFERARRALDGGLSVLLQGETG FT AGKEVYAQHLYRRSIWRDGPFVAVNCGALPESLIEAELFGYEPGAYTGARRLGARGRLR FT EADGGVLFLDEIGDMPLALQTRLLRALQERMVQPLGADKAVPVNFGLVSATHRDLDAMI FT AAGEFRADLYYRLHDYAVPLPRLRERDDLRPFICAALRALDDTPAGLTLADDALDALAA FT YAWPGNYRQLRSVLRTLALFHPPGSLIHRHHLPAAIAAPAVHAADGAAPRPGVAAPPAA FT PASLRDASLHRIDQALARHGGNIAGAAHELGIHRSTLYRHLARQRG" FT misc_feature complement(1425377..1425499) FT /note="HMMPfam hit to PF02954, Bacterial regulatory FT protein, Fis family, score 3.5e-10" FT misc_feature complement(1425653..1426312) FT /note="HMMPfam hit to PF00158, Sigma-54 interaction domain, FT score 5.1e-86" FT misc_feature complement(1426199..1426240) FT /note="PS00675 Sigma-54 interaction domain ATP-binding FT region A signature." FT CDS 1427431..1429023 FT /transl_table=11 FT /gene="acoD" FT /locus_tag="BPP1323" FT /product="aldehyde dehydrogenase" FT /EC_number="1.2.1.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP2157" FT /protein_id="CAE36625.1" FT /translation="MRPPRDGKQSSRRHNDIRRQTMDLSDLKKLGLDVAYPFKEQYENY FT IGGQWVPPVGAEYFDNLSPITGQPFCRVPRSGAADIELALDAAHRARAAWARTSPAERA FT NILLRIADRIEGQLPMLAVAESIDNGKPLRETTAADLPLAIDHFRYFAGCIRAQEGAIS FT EIDANTVAYHFHEPIGVVGQIIPWNFPLLMAAWKLAPALAAGCVVVLKPAEQTPASILV FT LAELIGDLLPPGVLNVVNGYGKEAGQALATSKRIAKIAFTGSTPVGKHILHAAADNLIP FT ATVELGGKNPNIFFDDVMDHDDEFLDKALEGLAMFALNQGEVCTCPSRILIQESIYERF FT IEKAIARVQSIKTGHPLDAGTMVGAQVSQVQMDKILSYIDIGRQEGAQCLTGGARNDML FT PGGLDQGFYVQPTMLLGKNSMRIFQEEIFGPVAAVATFKDEEEAIAMANDTFYGLGAGV FT WSRDGARAYRVGRGIEAGRVWTNCYHLYPAHAAFGGYKQSGIGRETHKAALSNYQQTKC FT LLVSYSAKALGFF" FT misc_feature 1427575..1428996 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 1.8e-227" FT misc_feature 1428280..1428303 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT misc_feature 1428379..1428414 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS complement(1429227..1429877) FT /transl_table=11 FT /locus_tag="BPP1324" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2156" FT /protein_id="CAE36626.1" FT /translation="MDSSQVPNPVLVLVGSPRRDGNSALLAQAVAEGARQSGAVATLLF FT LDDYIAGFLTDEKEADARRPDDRYGELFFDHFLPARAVVLCTPVYWYGMSAQAKAFFDR FT SFTYYSASHPRHAEVLRRMTGKRLALAVSSEETYPGAALGIVHQLQEFTRYTHSQFVGM FT VHGAGNRRGEVAHDPRRPLQAAHRLGHGLLSLPYSDYRIDSPRDHQVWPGAPA" FT CDS join(1430009..1430539,1430538..1430915) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1325" FT /product="putative LysR-family transcriptional regulator FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2154" FT /db_xref="PSEUDO:CAE36627.1" FT misc_feature 1430027..1430206 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1e-21" FT misc_feature 1430069..1430161 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature join(1430270..1430539,1430538..1430876) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.2e-25" FT CDS 1430912..1432207 FT /transl_table=11 FT /locus_tag="BPP1326" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2153" FT /protein_id="CAE36628.1" FT /translation="MSAPADPRLAQLRRMQRWALALLAAMIAGFVASHLMGGQGAWAWV FT RAFCEAATVGALADWFAVVALFRRPLGLPIPHTAIIPANKARIGDNLAVFVRDHFLDPA FT TLLEKLRVFDPAARLGHWLADPRQTRSLGQGARQVALQALDLLDEQAVSRAIQGFAVAQ FT LRRWDAARTAGEVLALLTRDGRHQELLDAALRRLGDYLGEEDIRQRACALLVKFARKEW FT PRIIAAVDVIGSVEGIADNLADRMARALVDELRDVLSRPDHPVRRNYEAWVADYIARLR FT DDPELAGQVEALKQRLIDDPRVQEYALGLWRDIHAVLRRDLQAEDSALARHLEDALQAL FT GQRLSRDPELRRAVNEHVLDSARKLTDSLRSGVTEHISRTVKNWDERHLVRELELSVGR FT DLQYIRFNGTLVGGLIGLALHAGVLLVQRAGG" FT misc_feature 1430912..1431040 FT /note="Signal peptide predicted for BPP1326 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.964) with cleavage site FT probability 0.379 between residues 43 and 44" FT misc_feature 1430969..1431037 FT /note="1 probable transmembrane helix predicted for BPP1326 FT by TMHMM2.0 at aa 20-42" FT CDS complement(1432229..1433113) FT /transl_table=11 FT /locus_tag="BPP1327" FT /product="putative lysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2152" FT /protein_id="CAE36629.1" FT /translation="MSRNIDTALLRAFLAVHDTGSLTAAAALLHLTQGAVSQQLQRLEA FT LFGRTLLERRRSGAALTGDGARLLGRAREMVRINDELMQHMTGADCVGAVRLGVPHDLI FT GTHLPGLLRAYSLRYPDVDISLISATSPELLEQVRRRKLDLTLAEEPIGAAAGGERLAV FT DRVVWLAAPGGQAWRKNPLPVSLVSDACAFRPVLADALDGGRIPWRSVFENGNADATLT FT TVRLDLAVTASLLSVAPADLQVLDAASGLPALPDYAINLYIAPGERSQAVEEMAHHIRQ FT AYQERRPAYAAAA" FT misc_feature complement(1432262..1432852) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 9.7e-20" FT misc_feature complement(1432916..1433095) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.2e-16" FT misc_feature complement(1432961..1433053) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1433036..1433113) FT /note="Signal peptide predicted for BPP1327 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.880) with cleavage site FT probability 0.495 between residues 26 and 27" FT CDS 1433212..1434087 FT /transl_table=11 FT /locus_tag="BPP1328" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2151" FT /protein_id="CAE36630.1" FT /translation="MQTTTSLIASVRRIAAFSDGARGGNPAGVHVAEVLPDAMTMQQMA FT AEIGYSETVFAAPAYGGWRVRYFAPEAEVPFCGHATIALGAVLAEQEGDGVFALTTNHA FT NITVEGRRQGGLYSAALQSPRTRSAPLEAAVRDEALALFGYTPADLDSRLPPAYAEAGA FT AHLILPLNSRERLAAMRYDLAAGRAFMKRTGVVTIAWVHAESATLLHARNAFAAGGVYE FT DPATGAAAAALAGHLRDSGWLRAGAIEILQGFDMGVPARLRAEYGPEPGSSVRVAGTAR FT ALARQPALID" FT misc_feature 1433233..1434078 FT /note="HMMPfam hit to PF02567, Phenazine biosynthesis-like FT protein, score 2.7e-41" FT CDS complement(1434077..1434433) FT /transl_table=11 FT /locus_tag="BPP1329" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2150" FT /protein_id="CAE36631.1" FT /translation="MDQYVDGFLLSVPNDKLDTYRQMATKAGAIWKEHGALAYCECTGD FT DLDIEGMVSFKTSAAAREGETVVFAWIVYPNRAERDRINAAVMADPRLKEQCVEGVFDF FT KRMAYGGFKTLVNL" FT CDS join(1434507..1434722,1434726..1435538) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1330" FT /product="putative AraC-family transcriptional regulator FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2149" FT /db_xref="PSEUDO:CAE36632.1" FT misc_feature join(1434579..1434722,1434726..1435118) FT /note="HMMPfam hit to PF01965, ThiJ/PfpI family, score FT 0.0088" FT variation 1434723..1434725 FT /note="In-frame TAG stop codon in parapertussis; CAG in FT pertussis" FT misc_feature 1435239..1435376 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 1.8e-05" FT misc_feature 1435395..1435526 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.00026" FT CDS complement(1435709..1435888) FT /transl_table=11 FT /locus_tag="BPP1331" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2148" FT /protein_id="CAE36633.1" FT /translation="MPAKSKAQQMAAGAALAAKRGESRVSDLKGASRDMYDSMSERELE FT HMAGTARKGKPYHK" FT CDS 1435986..1436510 FT /transl_table=11 FT /locus_tag="BPP1332" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2147" FT /protein_id="CAE36634.1" FT /translation="MQCPAFPGRFLRSSRMQISRHFPRLARRAALALCLAGAAQVHAQE FT AAVQRKSDYPFAATVARLQDALRAKGMTIFAVIDHQAAAKQAGLDMPPTQVVVYGNPKA FT GTPLMLAAPDFALELPLKVLVRETASGEVLVVYHPAGTREGMLGLPAGMAQQLAGAERI FT VDAAVRRAPAD" FT misc_feature 1435986..1436114 FT /note="Signal peptide predicted for BPP1332 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 43 and 44" FT misc_feature 1436124..1436489 FT /note="HMMPfam hit to PF03625, Domain of unknown function FT DUF302, score 7.1e-26" FT CDS complement(1436521..1437357) FT /transl_table=11 FT /locus_tag="BPP1333" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2146" FT /protein_id="CAE36635.1" FT /translation="MTPPARSSAAVPAQYADVHYADRPMRIEYALLAPERRDAPLLVFL FT HEGLGSLAMWRDWPRRVCDAAGCRGLVYSRYGYGRSTVRPLDESRPIDYLHQQAAQALP FT ALFAALGIDARRDKPVLFGHSDGASIALLYAALCPDAVAGIAVAAPHIYVEDITVANIA FT VALRAYRETTLRDRLARYHDDVDSTFASWTDTWLDPAFRQWNIEAYLPAITCPMLAMQG FT VDDEYGTLEQIRGIRRLAPQTRLLEIQDCGHSPHKDQPELVTRALAGFVGALPRPA" FT misc_feature complement(1436545..1437156) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 4.1e-09" FT CDS 1437470..1437841 FT /transl_table=11 FT /locus_tag="BPP1334" FT /product="putative ArsR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2145" FT /protein_id="CAE36636.1" FT /translation="MVEYQAPALDRVFHALSDPTRRAMLRRLADGEHNIRALAAPFAMS FT FTAASKHLKVLESAGLVSRRVQGRSHLCRIDAAPLAAIDEWLKFYERFWHTRLDMLETL FT LRADAASSVPSHPDQDPTP" FT misc_feature 1437506..1437739 FT /note="HMMPfam hit to PF01022, Bacterial regulatory FT protein, arsR family, score 2.1e-13" FT CDS 1437838..1438389 FT /transl_table=11 FT /locus_tag="BPP1335" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2144" FT /protein_id="CAE36637.1" FT /translation="MTSPSSAFPDGHGARLDAQSIRFERLLPGPIERVWAWLADADKRA FT RWLAGGELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTLLRCEPPRVLALT FT WGGGAGEAPSEVLFELSEAGEQVRLVLTHTRLADRAAMLDVAGGWHAHLAVLAGKLAGQ FT APPPFWTTLAQAEQDYEQRL" FT CDS complement(1438405..1440096) FT /transl_table=11 FT /locus_tag="BPP1336" FT /product="putative sulfate transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP2143" FT /protein_id="CAE36638.1" FT /translation="MPHSVACLDLRVIALLEAKRAGLLRRAHWLPNIVSGLIVGVVALP FT LAMAFAIASGAKPEQGLYTAIVAGLLVSLCGGSRVQIAGPTGAFIVILAGITAQHGVAG FT LQLATLMAGCILLALGAARLGAIIKYIPAPVIVGFTAGIGVIIWVGQWKDFFGLPSPAG FT THFHEKLWQLVHSLPQLHLATTALAALSLALLLLNNRLPYLRRVPGPLVALVVATTLQA FT VLGLDGVATIGSAFGGIPQGLPSWQWPEITVSRVIELIGPAFAIAMLGAIESLLSAVVA FT DGMAGTRHDSNQELVGQGLANIVAPLFGGFAATGAIARTATSIRNGGTSPLAGVVHCIT FT LLLMVLLLAPLAENVPLAALAAILFVVAWNMSDAPHFVRMIKRAPRADVAILLVTFVLT FT VFADLVVAVNIGVVIAILHFLRRMASSVQVQAQSPAELGDELGHRGYGPLPDDVLVYAV FT EGPLFFGAAENFERALAATHTDPRTLIIRLRWVPFIDITGLQALEEVITDLQRRGVRVI FT LSGANPRVKAKLHRAGLVGLAGADNVFDRFEDAVLSCRAPAAPATA" FT misc_feature complement(1438447..1438779) FT /note="HMMPfam hit to PF01740, STAS domain, score 2.2e-20" FT misc_feature complement(1438828..1439742) FT /note="HMMPfam hit to PF00916, Sulfate transporter family, FT score 4.5e-88" FT misc_feature complement(join(1438858..1438923,1438963..1439028, FT 1439041..1439106,1439143..1439208,1439254..1439319, FT 1439506..1439556,1439650..1439715,1439737..1439802, FT 1439848..1439913,1439935..1440000)) FT /note="10 probable transmembrane helices predicted for FT BPP1336 by TMHMM2.0 at aa 32-54, 61-83, 98-120, 127-149, FT 180-197, 259-281, 296-318, 330-352, 356-378 and 391-413" FT CDS complement(1440145..1440825) FT /transl_table=11 FT /locus_tag="BPP1337" FT /product="putative gntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2142" FT /protein_id="CAE36639.1" FT /translation="MRSSTDLSAEGISQAIATAIVSHRLPPGTRLREEALASVYKVSRT FT KIRAALLMLSKDKLIQIVPDKGAFVSKPDAHEAREVYAVRRILEAALAREFVACAAPQD FT YERLEQHLHQEREAIHEGDVQRRNQLLAGFHLQLAEIVGNSVLTAMLHELLARTAVITV FT MYQSAHDASCSSQEHYAFLAAARDGDAERACALMDEHLLHLQTALDFDGAPAPNRDLVA FT ALLS" FT misc_feature complement(1440616..1440792) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 4.7e-08" FT CDS complement(1441074..1441532) FT /transl_table=11 FT /locus_tag="BPP1338" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2141" FT /protein_id="CAE36640.1" FT /translation="MHTRARHATSPLPAMPTSLPARAYALPLILPLLLAACSDAVQTQY FT RDLDEARAAGAIQRGWLPAWLPARTGAIAEAHDLDTNRRAARFVLPDGARIEPPGCAPA FT SGRLPPPALALPGWPASLHQDGAAGRYRLYRCADGYAAFDASHGYLWN" FT misc_feature complement(1441464..1441532) FT /note="Signal peptide predicted for BPP1338 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.976) with cleavage site FT probability 0.707 between residues 23 and 24" FT CDS 1441702..1442631 FT /transl_table=11 FT /locus_tag="BPP1339" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2140" FT /protein_id="CAE36641.1" FT /translation="MNQPSSLAADLRGAWHAQAQSHPLITLGLAASAAGVVLLLVAGIV FT NALTGENRVHVGYAVLGGTAGFAATALGALMALGLRAISARTQDAMLGFAAGMMLAASA FT FSLILPGLDAAGTIVGPGPAAAAVVALGLGLGVLLMLGLDYFTPHEHERTGHQGPEAAR FT VNRVWLFVLTIILHNLPEGMAIGVSFATGDLRIGLPLTSAIAIQDVPEGLAVALALRAV FT GLPIGRAVLVAVASGLMEPLGALVGVGISSGFALAYPISMGLAAGAMIFVVSHEVIPET FT HRNGHETTATVGLMAGFALMMFLDTALG" FT misc_feature join(1441762..1441830,1441873..1441941,1441975..1442043, FT 1442071..1442139,1442200..1442268,1442377..1442445, FT 1442464..1442523,1442566..1442625) FT /note="8 probable transmembrane helices predicted for FT BPP1339 by TMHMM2.0 at aa 21-43, 58-80, 92-114, 124-146, FT 167-189, 226-248, 255-274 and 289-308" FT misc_feature 1442185..1442616 FT /note="HMMPfam hit to PF02535, ZIP Zinc transporter, score FT 2e-29" FT CDS complement(1442644..1443291) FT /transl_table=11 FT /locus_tag="BPP1340" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2139" FT /protein_id="CAE36642.1" FT /translation="MPFLRAPLRAHRAVREQDMKSRRLQLAGVALMMAAACGQAVAGGG FT HHGHHGYYGGYGHSHGSSSDGWWIAGALALVAAGTYLAVSSQPSYAPAAQYSAGGITYT FT TPGGYAASPYDSTVYDPPSYDPPTAYEDAGYAPAGHGQPAFDDGTVAGYPVAPQGAGIA FT RTATRQPAGEAACRREAMNQSGYDPATPSAWTTGVSVDSYQRALSACLAGRG" FT misc_feature complement(join(1443037..1443093,1443154..1443219)) FT /note="2 probable transmembrane helices predicted for FT BPP1340 by TMHMM2.0 at aa 24-46 and 66-85" FT CDS complement(1443365..1445176) FT /transl_table=11 FT /locus_tag="BPP1341" FT /product="putative ABC-transporter membrane-spanning FT ATP-binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2138" FT /protein_id="CAE36643.1" FT /translation="MRMLWTYLRPHGGLALLALLLAAASQVLALIDPIIFGRIIDEYAI FT GRAGKTGDQLLAGVLGLLALAVAILSRLAKALQEYVTRLVVQKLGTQIFNDGLRQVMRL FT RFQEFEELRSGETLSLLQKVRSDSERFINAFINTAFAAGVGVAFLCWYSVTRHWLLVPV FT FFVGVLLLGGLTGLLSRQIRSQQRSIMRETNRNSGFITESLRNIELIKSLGLTYPEIRR FT LQAQTQQIFALEMQKVKRIRLLSFLQGMILSVLKLSVLFALLWLILRDVLSTGELIAMQ FT FISVAIFAPLQELGNLILAYREADASLNHYAALMARPVERNPESAQDSGPIQRVRFGEV FT RFRHQGATENALDGVSFEARLGDTVAFVGPSGSGKSTLVKLLVGLYAPDHGEVYYNDVS FT TRDLRFNPTRRQIGFVTQETHLFSGTLRENMQLVKPDVTDEEIVAAMRQASCANVQARS FT PAGLDTTIGEGGVKLSGGERQRLSIARALVRQPRLLIFDEATSALDSLTEEQITQTIRD FT VSRRAGQITILIAHRLSTIMHADTIFVLEKGRVVEQGSHAELLAGKGLYYAMWRQQIGE FT RPAVRAPEPQSEPDTAGGGPEAGVSLL" FT misc_feature complement(1443533..1444093) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.1e-52" FT misc_feature complement(1443716..1443760) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1444049..1444072) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(join(1444280..1444345,1444376..1444441, FT 1444637..1444702,1444718..1444783,1444955..1445011, FT 1445072..1445137)) FT /note="6 probable transmembrane helices predicted for FT BPP1341 by TMHMM2.0 at aa 13-35, 55-74, 131-153, 158-180, FT 245-267 and 277-299" FT misc_feature complement(1444304..1445134) FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region, score 8.1e-10" FT misc_feature complement(1445024..1445047) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1445090..1445176) FT /note="Signal peptide predicted for BPP1341 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 29 and 30" FT CDS complement(1445260..1445811) FT /transl_table=11 FT /locus_tag="BPP1342" FT /product="putative acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2136" FT /protein_id="CAE36644.1" FT /translation="MPSAPATPSVAVRRAQAPDAALLPAIERSAGQRFLDAPGLAWIAA FT DEVMSEQDHRAWIAAGTSWVAECPGAGLAGFLVAERTADALHVWELAVRREMQGRGIGG FT RLVRAAIDAASAAGLPAITLTTFRDLPWNQPFYARLGFATLQADGLNVRLQAILAREAS FT LGLPAARRCAMRREIAAARR" FT misc_feature complement(1445383..1445619) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 6.4e-13" FT CDS 1445866..1446060 FT /transl_table=11 FT /locus_tag="BPP1343" FT /product="putative membrane protein" FT /note="Similar to Hordeum vulgare low-temperature induced FT protein Lt101.2 SWALL:LT02_HORVU (SWALL:Q9ARD5) (54 aa) FT fasta scores: E(): 0.042, 45.83% id in 48 aa, and to FT Xylella fastidiosa hypothetical protein Xf0135 SWALL:Q9PH11 FT (EMBL:AE003867) (64 aa) fasta scores: E(): 4.6e-15, 65.51% FT id in 58 aa" FT /protein_id="CAE36645.1" FT /translation="MRLLLAIFLPFTVFFTIGRPIAGIICLLLQITLIGWIPAALWAVY FT ALSQFHTDRKIRDAVGGRG" FT misc_feature 1445926..1445994 FT /note="1 probable transmembrane helix predicted for BPP1343 FT by TMHMM2.0 at aa 21-43" FT CDS complement(1446079..1446426) FT /transl_table=11 FT /locus_tag="BPP1344" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2134" FT /protein_id="CAE36646.1" FT /translation="MHYHGSCHCGTIRFDVEGELTGAMSCNCSICRRKGALLWFVPRDH FT LRLATPDEQIATYTFNRHLIKHRFCPTCGIHTHGEGVDQQGRAMAAINIRCLDDVDLDA FT VAVHQYDGRAA" FT CDS complement(1446455..1447894) FT /transl_table=11 FT /locus_tag="BPP1345" FT /product="putative transmembrane efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2133" FT /protein_id="CAE36647.1" FT /translation="MPHTLDERKRWLALMVLCLGVLMIVLDTTIVNVALPSIKADLGFT FT EASLVWVVNAYMLTFGGFLLLGGRLGDLLGQRRMFLAGLTLFTLASLACGMAQGQAMLV FT AARAVQGLGGAVVSAVALSLIMTLFTEPAERARAMGVYGFVCAGGGSIGVLLGGLLTSS FT LSWHWIFLVNLPIGALVYALCLPLLPASQGPTGHPRLDLAGAAAITASLMLAVYAVVNG FT NEAGWTSPQSLGLLALAVALLALFLRIEARVPAPLMPLSLFALRNVATANIVGVLWAAA FT MFAWFFISALYMQLVLGYTAMQVGLGFLPANIIMAAFSLGLSARLVMRFGIRAPLVCGL FT LVAALGLALFARAPVAGSFAVDVLPGMLLLGLGAGIAFNPVLLAAMSDVDPSEAGLASG FT VVNTSFMMGGALGLAVLASLAAGRSASLRAGGADVLTALNGGYHAAFAVGAVFAALAAL FT LAGVLLRRPQPGASAPAADAH" FT misc_feature complement(join(1446506..1446571,1446632..1446697, FT 1446737..1446802,1446842..1446907,1446929..1446994, FT 1447025..1447090,1447154..1447219,1447235..1447288, FT 1447325..1447390,1447406..1447471,1447508..1447573, FT 1447589..1447654,1447691..1447747,1447793..1447858)) FT /note="14 probable transmembrane helices predicted for FT BPP1345 by TMHMM2.0 at aa 12-34, 49-68, 80-102, 107-129, FT 141-163, 168-190, 202-220, 225-247, 268-290, 300-322, FT 329-351, 364-386, 399-421 and 441-463" FT misc_feature complement(1447796..1447894) FT /note="Signal peptide predicted for BPP1345 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.777) with cleavage site FT probability 0.512 between residues 33 and 34" FT CDS complement(1447913..1448332) FT /transl_table=11 FT /locus_tag="BPP1346" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2132" FT /protein_id="CAE36648.1" FT /translation="MPQISAYLMFDGDCAEAMRLYERILGGKLDALITYGESPPEMPCE FT PQDRDLIMHARLRLDDQLLMASDSNSQCPYEGKKGFSLSLVYPTVSDAQRIFNALAEGG FT QVTMPLQKTFWAEIFGVLVDRHGTAWMISGGQMNS" FT CDS 1448483..1449091 FT /transl_table=11 FT /locus_tag="BPP1347" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2131" FT /protein_id="CAE36649.1" FT /translation="MAEIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVV FT VLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGL FT WTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCGWVA FT DRWAEMLSLPPADKARLLLLPPLDRLREIDAVLAADGHA" FT misc_feature 1448489..1449076 FT /note="HMMPfam hit to PF02190, ATP-dependent protease La FT (LON) domain, score 0.014" FT CDS 1449104..1449922 FT /transl_table=11 FT /locus_tag="BPP1348" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2130" FT /protein_id="CAE36650.1" FT /translation="MTGTMTIRIDEELRAYIDPLTPDEYAALEQSLLAEGCRDALVLWG FT DLLVDGHNRHAICSKHGIAFNTVQNTRLQSMDDVRLWMIDNHLGRRSVSDFQRGVLALR FT KKEILESRRQAGAGDAALAGGDGPAPLTRQTLARQARLSSTTLGQIEKIRQQAAPELVR FT AVQSGEISINAAAAVATLPAPQQAAAAAGGRGELRAAARQVREARLPVRRASEAEPAPA FT AEPRVVDDYPAEVARLDRLVAQLAEERDALKKKVVQLTVALAEARAKPGD" FT CDS complement(1449874..1450848) FT /transl_table=11 FT /locus_tag="BPP1349" FT /product="putative araC-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2129" FT /protein_id="CAE36651.1" FT /translation="MSALPDSPSASPPPRHDELASLIERHTPADGSTATALPGLNFYRS FT SSPTELNVSFYRPSLALLAQGAKRVQLGDDVYEYDTSHYLLTSFDLPVASRVTLATPGT FT PYLCFALDLDPHRIAGLISELGAPPAGQPLRRGLTLARLTEPLLGAVLRLARLLDTPAD FT IPVLAPLIEREIHYRLLSGPMGGRLRHIARAEGTALQIARAIDWLRRHYAQPLRVEHLA FT TTVNMSVSSLHHHFKAVTALSPLQYQKQLRLHEARRLMVAETLDAGAAAHRVGYESASQ FT FSREYSRLYGAPPLRDAARLRGTAPADAQSPGLARASASATVS" FT misc_feature complement(1449952..1450083) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.71" FT misc_feature complement(1450102..1450239) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 2.6e-07" FT misc_feature complement(1450117..1450251) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT CDS complement(1450877..1451938) FT /transl_table=11 FT /locus_tag="BPP1350" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2128" FT /protein_id="CAE36652.1" FT /translation="MRSIAMQAADLYVLQTAQSWLDAGQAAVLLTVARTWGSSPRPPGA FT MMAIRADGAVAGSVSGGCIEDDLIDQIRQRGIAALCPGARPALATYGVDGEQARRFGLP FT CGGTLQLVLEPLGAHSRLADLLARLRAHQTVRRSVRLADGAVTLEPAAADAEPRLDGAG FT FASVLGPRHRLLVVGAGQLSRYLCEMAIALDFDVTVSDPRQEYRAGWQVEGVALTTAMP FT DDMVIAARPDARTAVIALTHDPKLDDLALIDALQTPAFYVGALGSRANHARRVARLREH FT FGLTPAQLARLRGPAGIYIGSRTPPEIALSIMAEIVAGKNGAPLPPAASVAAGKARQPG FT GAGVIQAGLCATL" FT misc_feature complement(1450964..1451887) FT /note="HMMPfam hit to PF02625, Uncharacterized BCR, FT COG1975, score 2e-22" FT CDS complement(1451935..1454148) FT /transl_table=11 FT /locus_tag="BPP1351" FT /product="putative exported oxidoreductase subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP2127" FT /protein_id="CAE36653.1" FT /translation="MRIAIQNLSRRRFVQGAGGLLLGLSLPPLARRAMAAGPQAGDGFA FT ANAFVRIGADGRITVLAKHLEKGQGAYTGLATLLAEELDADWRQVRVEGAPADSARYGN FT QALGGLQGTGGSTAMFDSWEPMRRAGATARAMLVQAAAQRWQVPADTIEVAEGVLSHPA FT SGRRAGFGELAEAAARSPVPEDVPLKDPARFRLIGKHRLPRVDSAAKSDGSALYTQDMK FT LPGMLVAVVAHAPRLGAAVARVDDAAARAVPGVRAVVRFGGAALRHAGVAVLATNTWAA FT RAGRDALRIEWDEGLAYRQGSADILARYREAVGRPGSMAARKGDIDAAFAGAAKVIEAE FT YTYPYLAHAAMEPLNCLVRLDDERCEIWNGEQFQTADQRAIAQYLGMPAERITLTQLYA FT GGSFGRRASSHADYLLEAVAIARTARAQGLNAPVKLVWMREDDMRAGYYRPLNLHRARL FT ALGADGALQAVHVRMAGQSILLGTPLADWVRDGVDPVSVEGLSDLAYAVPNLQVELHTP FT TDVPVPVLWYRSVGHTHTAFSAETLIDEAAVAAGQDPVAYRLALLAAHPRHREVLQLAA FT ARAGWREPLAAGAPGTRRGRGVAVHESFRSVVAQVVEVTIAADGALKVDRVVCAVHCGL FT AVNPDVVRAQMEGGIGFALSTALHGAITLKDGAVEQSNFHDYPVLRLAEMPAVEVHIAP FT STQPPTGVGEPGVPPLAPALANAIAQATGQRLRTLPLGTTVKA" FT misc_feature complement(1452091..1453242) FT /note="HMMPfam hit to PF02738, Aldehyde oxidase and FT xanthine dehydrogenase, molybdopterin binding domain, score FT 6.3e-08" FT misc_feature complement(1453258..1453515) FT /note="HMMPfam hit to PF01315, Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain, score FT 0.0025" FT misc_feature complement(1454044..1454148) FT /note="Signal peptide predicted for BPP1351 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.980 between residues 35 and 36" FT CDS complement(join(1454162..1454431,1454435..1454620)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1352" FT /product="putative oxidoreductase subunit (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2126" FT /db_xref="PSEUDO:CAE36654.1" FT misc_feature complement(1454183..1454407) FT /note="HMMPfam hit to PF01799, [2Fe-2S] binding domain, FT score 4.5e-34" FT misc_feature complement(join(1454426..1454431,1454435..1454611)) FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain, score 1.7e-08" FT misc_feature complement(1454483..1454509) FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT CDS complement(1454778..1455122) FT /transl_table=11 FT /locus_tag="BPP1353" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2125A" FT /protein_id="CAE36655.1" FT /translation="MIWKLIPIALLADLTACASGTRTDSSPPASSQTSSSAAPGSATTP FT SGPDCDAQPVQNLVGQKYSDSVGNDALRRSNSGSMRLLKPGQVMTMEYNAHRLNIILEG FT NGSISALRCG" FT misc_feature complement(1455030..1455122) FT /note="Signal peptide predicted for BPP1353 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.985) with cleavage site FT probability 0.677 between residues 31 and 32" FT CDS 1455279..1456184 FT /transl_table=11 FT /locus_tag="BPP1354" FT /product="putative lysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2125" FT /protein_id="CAE36656.1" FT /translation="MDKFQEVSLFLAVAEARSFAAAGRRLGLSASTVTRAVAALEARLG FT ILLLVRTTRHVRLTDAGEQFAHDCRAVLDSLAQAEEAAAGGRVQPRGELSVTAPALFGE FT LHVMPAIVDYLRQHRRVRLRALLVDRVVRLLDEGVDVAVRIGRLPDSSLTAIHVGDVRR FT IVCAAPDFLARAGVPSHPGMLPRYCTVSVVMEGQMDRWRFVCDGHARDLDVQAQLTVTS FT SQAAVRAAVQGWGLAQVVSYQAAGALREGALQVVLREFEPPPLPVHVVYPEGRKGAAKV FT RSFVEFCVERLRAELAELPA" FT misc_feature 1455288..1455467 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.6e-18" FT misc_feature 1455330..1455422 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1455537..1456157 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 8.2e-36" FT CDS 1456235..1457284 FT /transl_table=11 FT /locus_tag="BPP1355" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2124" FT /protein_id="CAE36657.1" FT /translation="MRRRRAGRAAGIMAVVRYDIPGALMSDSLVFHTDLPGLADGPWHG FT GELAMQERAGARERMAQLGPRVIRDYMPQQHRDFFAQLPFMLLATVDAQGDPWASVLEG FT PPGFAHSPDERTLRLDAWPAGDDPARAGLAHGAGVGMLGIELSTRRRNRVNGHVAALDG FT QGFCVVVTQSFGNCPQYIQTRHARQAAPAPQPARWLAGLDAAARTLVGQADTLFVASYA FT RQAGPHAVDVSHRGGPPGFVHLRGDTLTMPDFSGNRFFNTLGNLLANPRAGLVFVDFAR FT GDLLQLCGRAEVLAEAGAPAAYPGAQRLWRVHVERAVRRPAALGLRAGFGEYAAQLAAV FT GQWAGEPPA" FT CDS complement(1457292..1458410) FT /transl_table=11 FT /gene="aroG" FT /locus_tag="BPP1356" FT /product="phospho-2-dehydro-3-deoxyheptonate aldolase, FT Phe-sensitive" FT /EC_number="2.5.1.54" FT /note="ortholog of Bordetella pertussis (BX470248) BP2123" FT /protein_id="CAE36658.1" FT /translation="MTRIDDPLHDREAGQADATQDTTRIDDVRIGAVRPLISPALLQDE FT LPVSAPLQALVEDSRARIADVLHGRDDRLVVVVGPCSIHDHEQAMEYARQLKEATDTLA FT DDLLIVMRVYFEKPRTTVGWKGYINDPRLDGSFRINEGLRRARHLLLEIGALGLPIATE FT FLDLLSPQYIADLIAWGAIGARTTESPSHRQLASGLSCPLGFKNGTDGGIQVAADAIVA FT ASAPHAFMGMTKMGTAAIFETRGNDDTHVILRGGKQGPNYDAAAIDACCAALAKAGLRE FT QVMVDCSHANSNKSHARQVDVARDLARQLAGGDRRIIGIMIESNLEEGRQDLKPGVPLK FT RGVSITDACLSWAQTEPVLAELAQAVRQRREG" FT misc_feature complement(1457310..1458290) FT /note="HMMPfam hit to PF00793, DAHP synthetase I family, FT score 3.8e-149" FT CDS complement(1458532..1459176) FT /transl_table=11 FT /locus_tag="BPP1357" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2122" FT /protein_id="CAE36659.1" FT /translation="MRAAMPEPTQLLAFALICLGMTLTPGPNMMYLVSRSLSQGYRAGL FT VSLAGVALGLVFYVLCAVLGITALLMAVPLAYEALCVAGAIYLMYMAWQALRPGGQSPF FT QVRALAPSPPRRLFAMGLFTALLNPKIAVLYLSLLPQFIDPQQGSVLTQSLALGFTQVG FT ISICVNALFTVMAGAIAVFLARRPMWMVAQRWLMGSVLAGLAVRMALDARR" FT misc_feature complement(1458619..1458957) FT /note="HMMPfam hit to PF01810, LysE type translocator, FT score 8.5e-08" FT misc_feature complement(join(1458625..1458690,1458760..1458825, FT 1458901..1458966,1458979..1459044,1459081..1459146)) FT /note="5 probable transmembrane helices predicted for FT BPP1357 by TMHMM2.0 at aa 10-32, 44-66, 70-92, 117-139 and FT 162-184" FT CDS complement(1459378..1460730) FT /transl_table=11 FT /gene="gor" FT /locus_tag="BPP1358" FT /product="glutathione reductase" FT /EC_number="1.8.1.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP2120" FT /protein_id="CAE36660.1" FT /translation="MAFDFDLYVIGAGSGGVRAARFAAGYGARVAVAESRYLGGTCVNV FT GCVPKKLLVYGAHFHEDFEQAAGFGWNPGRPEFDWPTLIANKNREIERLNGIYRNLLVN FT SGVALHEGHARIVDPHTVEINGQRHSAQHILVATGGWPFVPDIPGKEHAITSNDAFFLP FT ELPRRVLVVGGGYIAVEFASIFNGLGAQTVQVYRRELFLRGFDGSVREHLRDELVKKGL FT DLRFNTDVERIDKRADGVLAVTLSDGSVLETDCVFYATGRRAMLDDLGLENTGVRLAES FT GYIEVDDEYRTSEPSILAIGDVIGRVPLTPVALAEGMAVARRLFRPQEYRKVDYDLIPT FT AVFSLPNIGTVGLTTEQALEHGFRVTRYESRFRPMKLTLTQSQKKTLMKLVVDADSQKV FT LGCHMVGPDAGEIVQGLAVALKAGATKQVFDDTIGIHPTAAEEFVTMRTAT" FT misc_feature complement(1459390..1459719) FT /note="HMMPfam hit to PF02852, Pyridine FT nucleotide-disulphide oxidoreductase, dimerisation domain, FT score 6.3e-45" FT misc_feature complement(1459795..1460715) FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, score 1.4e-91" FT misc_feature complement(1460584..1460616) FT /note="PS00076 Pyridine nucleotide-disulphide FT oxidoreductases class-I active site." FT CDS 1460905..1461201 FT /transl_table=11 FT /locus_tag="BPP1359" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2119" FT /protein_id="CAE36661.1" FT /translation="MQNEDSFFGSLGAMLGAVIRAIVDGLRYVFGGLGRALGDFFGGLA FT SALGMSPSVFNFALLVLGLLLLWTAVRAFMGRAIVAGIFWLVLAMLLLGGLIG" FT misc_feature join(1460923..1460991,1461049..1461117,1461136..1461195) FT /note="3 probable transmembrane helices predicted for FT BPP1359 by TMHMM2.0 at aa 7-29, 49-71 and 78-97" FT CDS 1461226..1461603 FT /transl_table=11 FT /locus_tag="BPP1360" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3386 SWALL:Q9HYL6 (EMBL:AE004760) (121 aa) fasta FT scores: E(): 3.1e-22, 52.54% id in 118 aa, and to FT Photobacterium profundum hypothetical 14.4 kDa protein FT SWALL:Q93CF8 (EMBL:AF409100) (127 aa) fasta scores: E(): FT 7.1e-18, 45.16% id in 124 aa" FT /protein_id="CAE36662.1" FT /translation="MLYRFLADLVLALHALFVAFAVLGGLLALRWPRLAWLHVPAALWG FT AGIMLAGAVCPLTPLENHWRAQAGQQGYEDGFIAHYLLAAIYPEGLSRTAQTVLGALAL FT AGNALVYAALWRRRRRGGIGR" FT misc_feature 1461226..1461297 FT /note="Signal peptide predicted for BPP1360 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.658) with cleavage site FT probability 0.338 between residues 24 and 25" FT misc_feature join(1461253..1461312,1461325..1461393,1461502..1461570) FT /note="3 probable transmembrane helices predicted for FT BPP1360 by TMHMM2.0 at aa 10-29, 34-56 and 93-115" FT CDS 1461644..1462339 FT /transl_table=11 FT /locus_tag="BPP1361" FT /product="probable glutathione S-transferase" FT /note="Similar to Pseudomonas aeruginosa probable FT glutathione S-transferase Pa1033 SWALL:Q9I4U1 FT (EMBL:AE004536) (213 aa) fasta scores: E(): 1.6e-60, 71.42% FT id in 203 aa, and to Anabaena sp. hypothetical protein FT All1124 SWALL:Q8YXT7 (EMBL:AP003584) (232 aa) fasta scores: FT E(): 4.8e-62, 67.25% id in 226 aa" FT /protein_id="CAE36663.1" FT /translation="MIDLYFWATPNGLKIKLFLEEAGLPYTEHPINIGKGEQFQREFLA FT IAPNNRIPAIVDQAPAGGGAPISLFESGAILLYLAEKIGRFIPADVRGRAEVLQWLFWQ FT MGGLGPMAGQNGHFNVYAPEKVPYAIERYTAETARLYDVMDRRLAEREFLAGEYSIADI FT ACYPWVVPHEAHGQKMAHFPHLSRWFEAIAARPATARAYKEAGDSYRPKAPMSDEERAV FT LFGQPGAPR" FT misc_feature 1461644..1461886 FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal domain, score 1.5e-10" FT misc_feature 1461905..1462231 FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain, score 9.1e-10" FT CDS complement(join(1462350..1463726,1463730..1463792)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1362" FT /product="putative GntR-family transcriptional regulator FT (Pseudogene)" FT /note="Similar to Ralstonia solanacearum probable FT transcription regulator protein Rsc3119 or Rs00574 FT SWALL:Q8XUR6 (EMBL:AL646073) (488 aa) fasta scores: E(): FT 6.9e-79, 50.92% id in 489 aa, and to Yersinia pestis FT putative GntR-family regulatory protein Ypo2845 FT SWALL:Q8ZCW3 (EMBL:AJ414154) (501 aa) fasta scores: E(): FT 4.9e-57, 39.34% id in 488 aa" FT /db_xref="PSEUDO:CAE36664.1" FT misc_feature complement(1463550..1463726) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 9.2e-08" FT CDS 1463908..1464618 FT /transl_table=11 FT /locus_tag="BPP1363" FT /product="putative GNAT-family acetyltransferase" FT /note="Similar to Brucella melitensis FT ribosomal-protein-serine acetyltransferase Bmeii0002 FT SWALL:Q8YE16 (EMBL:AE009639) (242 aa) fasta scores: E(): FT 1.2e-49, 58.9% id in 219 aa, and to Rhizobium loti FT hypothetical protein Mll2986 SWALL:Q98H84 (EMBL:AP003000) FT (228 aa) fasta scores: E(): 4.3e-49, 56.05% id in 223 aa" FT /protein_id="CAE36665.1" FT /translation="MSARVNEFGQPIGQAMPQWQARPRPPRDPAEGRYCRLEPLDAARH FT GDDLYAAFAVPDAASGWTYLSAGPFADRAGYDEYLRKAADSADPLHHAVIDLASGRAIG FT TLSLMRIDPANGVIEVGHVNFAPALRRSPASTEAQYLLMRRAFDELGYRRYEWKCDSLN FT APSRAAALRLGFLFEGIFRQALVYKGRTRDTAWFSIIDSEWPALRAAFERWLAPENFDA FT AGRQRKRLDACRQP" FT misc_feature 1464187..1464435 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 0.00034" FT CDS complement(1464721..1465647) FT /transl_table=11 FT /locus_tag="BPP1364" FT /product="integral membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1411 SWALL:Q9I3T3 (EMBL:AE004570) (303 aa) fasta FT scores: E(): 3.7e-60, 59.67% id in 305 aa, and to Ralstonia FT solanacearum hypothetical transmembrane protein Rsc0519 or FT Rs04969 SWALL:Q8Y218 (EMBL:AL646059) (301 aa) fasta scores: FT E(): 7.5e-54, 55.44% id in 303 aa" FT /protein_id="CAE36666.1" FT /translation="MAAAAPLRRPLDGFATYVMLALCICWGFQQIAIKLVAADVSPTLQ FT IGLRSAFAAVVLIWVVLRHEGLGALRDGTLGPGLAVGALFALEFLLVGVGLEYTTASHM FT AVFLYTAPIFTALGLHLLLPDERLKPLQWLGVAVAFGGIATAFLGKGHAAVPGMLLGDL FT LGVLAGAAWGATTVAIRKSSLSEAAPAKTLFYQMLMAGLALPAFHFASGGAAPVWSGAA FT LASLGFQSVVVALSSYLAWFWLLRRYLATRLAVLSFMTPLFGVTFGVLILDEPLDSGFV FT IGAVLVLAGITLVSGAELLREKLRRRT" FT misc_feature complement(join(1464748..1464804,1464835..1464900, FT 1464922..1464987,1465003..1465068,1465108..1465173, FT 1465204..1465257,1465279..1465344,1465360..1465425, FT 1465462..1465518,1465549..1465614)) FT /note="10 probable transmembrane helices predicted for FT BPP1364 by TMHMM2.0 at aa 13-35, 45-64, 76-98, 103-125, FT 132-150, 160-182, 195-217, 222-244, 251-273 and 283-302" FT misc_feature complement(1464760..1465140) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 2.5e-17" FT misc_feature complement(1465204..1465578) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 1.5e-13" FT CDS complement(1465650..1465985) FT /transl_table=11 FT /locus_tag="BPP1365" FT /product="putative thioredoxin" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1751 SWALL:Q9I2Y6 (EMBL:AE004601) (125 aa) fasta FT scores: E(): 3.1e-21, 53.7% id in 108 aa, and to FT Lactococcus lactis thioredoxin TrxA or Ll1644 SWALL:Q9CF37 FT (EMBL:AE006395) (104 aa) fasta scores: E(): 0.4, 26.82% id FT in 82 aa" FT /protein_id="CAE36667.1" FT /translation="MDQIELTDGTADRYLLDAPGLSLLVFHSRTCATCGVARQRLPEFD FT LPVDRLCWIDAGENGGLVQRYEVFHLPALFVTRDGAYYGPVSAQLADWDLRQQISLALD FT SYPAELP" FT misc_feature complement(1465863..1465919) FT /note="PS00194 Thioredoxin family active site." FT CDS complement(1466043..1467305) FT /transl_table=11 FT /gene="amaB" FT /locus_tag="BPP1366" FT /product="N-carbamoyl-L-amino acid amidohydrolase" FT /EC_number="3.5.1.-" FT /note="Similar to Bacillus stearothermophilus FT N-carbamoyl-L-amino acid amidohydrolase AmaB FT SWALL:AMB2_BACST (SWALL:Q53389) (409 aa) fasta scores: E(): FT 2.8e-50, 40.34% id in 409 aa, and to Arthrobacter aurescens FT L-N-carbamoylase HyuC SWALL:Q9F464 (EMBL:AF146701) (412 aa) FT fasta scores: E(): 4.8e-46, 37.44% id in 414 aa" FT /protein_id="CAE36668.1" FT /translation="MTTTFPPLNAERLWSRVETLSRMTLPDVPWTRRAFSPLFEQSRQW FT LRAEFEAAGLAVRLDAGGNLAGTRPGRDAARRPIATGSHCDTVMAGGRFDGIIGVLAGI FT EVAHTLHEQGVTLEHPFEVIDFLSEEPSDYGISCVGSRALSGQLTPDMLAARNADGETL FT AEGLRRIGGDPDALGAPLRGPGQTAAFVELHIEQGPVLESRGLPIGVVTNIVGIRRVLI FT TVHGQPDHAGTTPMDIRRDALVGAARVIDAAHRRASTQSGKPHYVVATIGRIAMTPNAP FT NAVPGMVELMLEVRSDSDAVLDAFPEAIMAEVADALAALRLSAAMAPVSRAHPTDCAPL FT VMDAVEDAATRLGYASMRLPSGAGHDAVYMAPTGPIGMIFVPCLNGRSHCPEEWLEPSQ FT LLDGTRVLYETVLELDRRLSR" FT CDS complement(1467335..1468717) FT /transl_table=11 FT /gene="norM" FT /locus_tag="BPP1367" FT /product="multidrug resistance protein" FT /note="Similar to Escherichia coli multidrug resistance FT protein NorM or B1663 SWALL:NORM_ECOLI (SWALL:P37340) (457 FT aa) fasta scores: E(): 7.9e-41, 33.92% id in 451 aa, and to FT Rhizobium loti multidrug efflux protein, NorM Mll4906 FT SWALL:Q98D15 (EMBL:AP003005) (467 aa) fasta scores: E(): FT 3e-101, 59.1% id in 445 aa" FT /protein_id="CAE36669.1" FT /translation="MPRSTARAAWKRELAATLALGLPLVLTNLAQMAMTVTDVIFIGRL FT GSQALAASALGANLFTAIEFFGLGLVAATAPMVAHALGRRGNTVRDVRRTVRQGLWTAV FT IYSVPGCLLLWHGEAILLAIDQPPELAAQAGAYLRALMWAMPPFLGFLVLRSFVTALQR FT PRSAFLIALAAIVLNVFGNWVLVFGNLGAPALGLVGAGLASALATLGLFLGMVGVVCLD FT RRFRRYHLFGDVWQPDWQRLAEFWKLGLPIGAATAFEVTIFNAAAFLMGWLGEPELAAH FT AIAIQIASVTFMIPYGIAQAATVRVGHAYGARQPDQVARAGWCAFSLGIGSMAIAAALM FT LLAPGLLVSAFLDIGDPANAQVLRLATAYLAVAALFQIVDGAQVLGAGMLRGLHDTRVP FT MLYAALGYWGVGLPSGAALAFWAGWRGVGVWSGLAIGLALVAVLMMQRWLRRDRVGLLR FT RA" FT misc_feature complement(join(1467371..1467436,1467452..1467517, FT 1467581..1467631,1467677..1467742,1467806..1467871, FT 1467902..1467967,1468061..1468126,1468157..1468222, FT 1468244..1468309,1468355..1468420,1468481..1468546, FT 1468607..1468672)) FT /note="12 probable transmembrane helices predicted for FT BPP1367 by TMHMM2.0 at aa 19-41, 61-83, 103-125, 140-162, FT 169-191, 201-223, 254-276, 286-308, 329-351, 366-383, FT 404-426 and 431-453" FT misc_feature complement(1467467..1467970) FT /note="HMMPfam hit to PF01554, Uncharacterized membrane FT protein family UPF0013, score 2e-35" FT misc_feature complement(1468166..1468654) FT /note="HMMPfam hit to PF01554, Uncharacterized membrane FT protein family UPF0013, score 1.2e-26" FT misc_feature complement(1468565..1468717) FT /note="Signal peptide predicted for BPP1367 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.387 between residues 51 and 52" FT CDS 1468905..1470761 FT /transl_table=11 FT /gene="pckG" FT /gene_synonym="pck" FT /locus_tag="BPP1368" FT /product="phosphoenolpyruvate carboxykinase [GTP]" FT /EC_number="4.1.1.32" FT /note="Similar to Mycobacterium smegmatis FT phosphoenolpyruvate carboxykinase [GTP] PckG or Pck FT SWALL:PPCK_MYCSM (SWALL:Q9AGJ6) (605 aa) fasta scores: E(): FT 3.7e-152, 59.59% id in 599 aa, and to Ralstonia FT solanacearum probable phosphoenolpyruvate carboxykinase FT protein pckA or Rsc0017 or Rs01839 SWALL:Q8Y3G3 FT (EMBL:AL646057) (622 aa) fasta scores: E(): 1.4e-210, FT 79.67% id in 620 aa" FT /protein_id="CAE36670.1" FT /translation="MNKPSEVKPVALNVPDYVKHSGLIAWVERIAALTKPDRVVWCDGS FT QEEYDRLCEQMVQGGTMRRLNPAKRANSYLACSDPSDVARVEDRTFICSEREEDAGPTN FT NWAAPQAMRETLGGLFDGAMRGRTMYVVPFSMGPLGSPIAHIGVELSDSPYVVVNMRIM FT TRMGRKVFDVLGSDGAFVPCVHSVGMPLAEGQQDVAWPCNPTKYIVHYPETREIWSFGS FT GYGGNALLGKKCFALRIASTMGRDEGWLAEHMLILGVTSPKGRKYHVAAAFPSACGKTN FT FAMLIPPHGMDGWKVTTIGDDIAWIKPGPDGRLHAINPEAGYFGVAPGTSEKTNFNAMA FT MLKANVIFTNVALTDDGDVWWEGMTDTPPAHLIDWQGQDWTPAIAAETGRKAAHPNARF FT TAPAAQCPSIDPEWENPKGVAIDAFIFGGRRSTTVPLVTEARNWVEGVYMAATMGSETT FT AAAAGQQGVVRRDPFAMLPFCGYNMSDYFDHWLKLGRRLEETGATLPRIYCVNWFRKGP FT DGKFVWPGFGENMRVLRWMLGRLDGQAGGVDQVFGISPAYGDIDWTGLEFSPDKFEQVI FT SVDLPAWRAELALHDELFTQLAARLPEDLPLTRTAIERRMAA" FT misc_feature 1468977..1470755 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00821, Phosphoenolpyruvate FT carboxykinase, score 0" FT misc_feature 1469721..1469747 FT /note="PS00505 Phosphoenolpyruvate carboxykinase (GTP) FT signature." FT CDS 1470822..1471445 FT /transl_table=11 FT /locus_tag="BPP1369" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc1925 SWALL:Q9A701 (EMBL:AE005866) (209 aa) fasta FT scores: E(): 2.3e-10, 34.5% id in 200 aa, and to Vibrio FT cholerae tellurite resistance protein-related protein FT Vc0813 SWALL:Q9KTS5 (EMBL:AE004166) (192 aa) fasta scores: FT E(): 2e-09, 29.38% id in 194 aa" FT /protein_id="CAE36671.1" FT /translation="MTLTSDDLRQIAALTLAHYDDNAVSFEVGTRDHDVSQNIAALLRH FT IQGDPPYAILDFGCGPGRDLKTFAALGHAAVGLDGAAHFVAMAHQATGCEVWQQDFLRL FT ALPAGRFDGIFANASLFHVPTQELPRVLGELRDTLKPGGVLFCSNPRGGNEEGWSRGRY FT GVWHDWESWRALLEAAGFQALEHYYRPAGLPREQQQWLASVWRR" FT CDS 1471433..1471966 FT /transl_table=11 FT /locus_tag="BPP1370" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc0991 or Rs04301 SWALL:Q8Y0Q2 (EMBL:AL646062) FT (166 aa) fasta scores: E(): 2.3e-21, 48.14% id in 162 aa, FT and to Caulobacter crescentus hypothetical protein Cc2489 FT SWALL:Q9A5G1 (EMBL:AE005918) (191 aa) fasta scores: E(): FT 5.4e-18, 43.45% id in 168 aa" FT /protein_id="CAE36672.1" FT /translation="MAQVAGFAALARADARVLVLGSMPGVASLRAQQYYGHPRNAFWPI FT AAELFGLDAAQPYAHRVQALQRAGVALWDVLQACERPGSLDAAIVADSVRPNDFQAFFA FT SHPGIACVGLNGAAAATLYRRHVLPRLHGLAHLRYVALPSTSPAHAAMDFAAKLRAWRA FT IAPASSDPSACLSP" FT CDS complement(1472116..1472979) FT /transl_table=11 FT /locus_tag="BPP1371" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Rb0265 or Smb20275 SWALL:Q92WR4 (EMBL:AL603642) (286 aa) FT fasta scores: E(): 3.6e-47, 51.31% id in 267 aa, and to FT Ralstonia solanacearum hypothetical protein Rsc0083 or FT Rs02257 SWALL:Q8Y397 (EMBL:AL646057) (281 aa) fasta scores: FT E(): 9e-35, 54.48% id in 279 aa" FT /protein_id="CAE36673.1" FT /translation="MSPSLFAAGAQAALADSPLIVTVAPNGAYKTAADHPAVPLTAAAL FT AAEARACLDAGAAMMHMHVRTPEGRHSLDVAAYREALAAVRQAVGEELLVQVTSEAAGV FT YRAAEQMAMVRELRPEAVSMGLREIAVPEMPERELADFLAWVAAERIMAQIILYDAADV FT ARWQALRARGLAPEGAWSVLFVLGRYSAGQVSSPRDLLPFLEVYDGSLPWAVCAFGREE FT NACVATAAAFGGHMRVGFENNLKLSDGATAPGNAALVAQAAQAGRVLGRPIATAAQARE FT IYGRLA" FT misc_feature complement(1472935..1472979) FT /note="Signal peptide predicted for BPP1371 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.943) with cleavage site FT probability 0.897 between residues 15 and 16" FT CDS complement(1472976..1473938) FT /transl_table=11 FT /locus_tag="BPP1372" FT /product="probable 3-hydroxybutyryl-CoA dehydrogenase" FT /EC_number="1.1.1.157" FT /note="Similar to Escherichia coli probable FT 3-hydroxybutyryl-CoA dehydrogenase PaaH or B1395 FT SWALL:PAAH_ECOLI (SWALL:P76083) (475 aa) fasta scores: E(): FT 6.4e-20, 35.21% id in 284 aa, and to Mycobacterium FT tuberculosis putative 3-hydroxybutyryl-CoA dehydrogenase FT FadB3 or Rv1715 or Mtv048.02 or Mt1754 SWALL:O53928 FT (EMBL:AL022003) (304 aa) fasta scores: E(): 2.3e-29, 38% id FT in 300 aa" FT /protein_id="CAE36674.1" FT /translation="MSSPDSALGRPGASHAVVIGGGTMGADVAVVLARALCRTTVVEPD FT AARAAALPRRAADNLAQAGRAEGAAHIAVVPGLDAVEWDSVGLVIECVPERLDIKQALF FT AELARRAPAHAILASNSSSFPISAIGAGLPTRERMLGLHFFMPAHLVPLVEVVLCEASD FT PACADVLIAFMRRCGMVPVRVAQDLPGFLANRLQHALSREAFDLIDRGIASPEDVDAAV FT RFGFGFRFLAAGPVMQRDHAGIDVHAAAGATMYPTFCNADTPARCLTERAADGRHGMKA FT GTGFYAWTPETIAAERARYDRLLRAGLDLLGAELPEIQP" FT misc_feature complement(1473075..1473371) FT /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain, score 1.9e-12" FT misc_feature complement(1473375..1473911) FT /note="HMMPfam hit to PF02737, 3-hydroxyacyl-CoA FT dehydrogenase, NAD binding domain, score 5.9e-32" FT CDS 1474053..1475054 FT /transl_table=11 FT /locus_tag="BPP1373" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1998 SWALL:Q9I2B1 FT (EMBL:AE004626) (306 aa) fasta scores: E(): 3.7e-25, 32.63% FT id in 285 aa, and to Rhizobium loti transcriptional FT regulator Mlr6981 SWALL:Q987N6 (EMBL:AP003010) (299 aa) FT fasta scores: E(): 5.4e-23, 31.97% id in 294 aa" FT /protein_id="CAE36675.1" FT /translation="MKINLSMRDIETVLVLGRTLNFRQAAAQLHLSQSALSTQVLRIEE FT ALGVRLFDRTTRTVRLTAAGEVFMQQAASLQVAFREAIDAVSGIASAEHGQVAVAALPS FT LAARLLPRVLMAYRQAHPGVALKVHDTLSGPAFDLVRAGEVDFALTAADPQQADLHYVP FT MMSDSFILLIPQDHALARGKGPLRWADTLAAPHVSMVHPSSVRQYAEWAFLQNRIRFQP FT AFEAEHLATIVAMVECGFGVAALPEIAAAAVAHSGIVEHPLTGPVAERSIGLVTSRNRT FT LSPAAAALVAQLREHLAASAYKPAPAAPSARTTAARARSRETAPGSPGAPRR" FT misc_feature 1474071..1474250 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.5e-18" FT misc_feature 1474113..1474205 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 1474320..1474946 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.1e-46" FT CDS complement(1474978..1476270) FT /transl_table=11 FT /locus_tag="BPP1374" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens putative FT transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677) FT (416 aa) fasta scores: E(): 4.9e-61, 43.9% id in 410 aa, FT and to Pasteurella multocida hypothetical protein Pm1527 FT SWALL:Q9CKS9 (EMBL:AE006189) (442 aa) fasta scores: E(): FT 1.2e-58, 39.11% id in 427 aa" FT /protein_id="CAE36676.1" FT /translation="MIESLSALGAMLALVFMRVPVAFAMALVGFVGLGLLRGWPPAYAM FT AGSVIYESGFQYLLSVLPLFILMGNFVTESRMSRELYAAAHALLGHRRGGLAMSTIAAC FT GGFGAICGSSLATAATMAKVAYPEMRRMGYSEKLAAGSIAAGGTLGVLIPPSIIMVVYC FT LLTEQSIGKMFAAGVLPGVLAILCYMAAVAWVVRRDPAAGPRGPRSTWPHTLHALRQVW FT MVLALIGMLLGGIYGGLFTPAEAAGVGAFLSFLFACSRRAMTWRRFLDVVVESAKTTGM FT IFVVMIGALMLANFINFTSLPQDLLDVVARHQLSPLTVILAICVIYIVLGCVLESMSMI FT LLTVPVFYPLVQSLGFDLIWFGVIVVVVTEISFITPPFGMNVFVLRGLLPGVSTPTIFR FT GVMPFVVSDVVRLAILVLFPSISLLLPSYVR" FT misc_feature complement(join(1474984..1475040,1475131..1475196, FT 1475218..1475319,1475365..1475430,1475494..1475595, FT 1475683..1475748,1475776..1475841,1475923..1475988, FT 1476052..1476108,1476169..1476234)) FT /note="10 probable transmembrane helices predicted for FT BPP1374 by TMHMM2.0 at aa 12-34, 54-73, 94-116, 143-165, FT 174-196, 225-259, 280-302, 317-351, 358-380 and 410-429" FT misc_feature complement(1475392..1475868) FT /note="HMMPfam hit to PF00597, DedA family, score 0.0052" FT misc_feature complement(1476199..1476270) FT /note="Signal peptide predicted for BPP1374 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.849 between residues 24 and 25" FT CDS complement(1476263..1476754) FT /transl_table=11 FT /locus_tag="BPP1375" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Rb0359 or Smb20373 SWALL:Q92WI0 (EMBL:AL603643) (155 aa) FT fasta scores: E(): 0.0014, 24.34% id in 152 aa, and to FT Escherichia coli hypothetical protein YiaM or B3577 FT SWALL:YIAM_ECOLI (SWALL:P37674) (157 aa) fasta scores: E(): FT 0.0014, 25.8% id in 155 aa" FT /protein_id="CAE36677.1" FT /translation="MRILDRAVTALLRAIVVISLCGMSLLTVADATGRYLLNRPIMGTV FT EMVELLMVAVIFASIPLVTRARGHITVDSFSHLFSPATLRAQDCVAGLLALTVSACLAW FT VALRKAQSTADYGDMTPMLNIPLAPFVYAMAVLLALDAAYRLAALVGPAATQPEPTQDD FT " FT misc_feature complement(join(1476323..1476388,1476434..1476484, FT 1476566..1476631,1476662..1476727)) FT /note="4 probable transmembrane helices predicted for FT BPP1375 by TMHMM2.0 at aa 9-31, 41-63, 90-107 and 122-144" FT misc_feature complement(1476668..1476754) FT /note="Signal peptide predicted for BPP1375 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.885 between residues 29 and 30" FT CDS complement(1476764..1477795) FT /transl_table=11 FT /locus_tag="BPP1376" FT /product="putative extracellular solute-binding protein" FT /note="Similar to Agrobacterium tumefaciens putative FT periplasmatic membrane protein DctP SWALL:Q9F7C9 FT (EMBL:AF282677) (330 aa) fasta scores: E(): 4.2e-20, 27.19% FT id in 342 aa, and to Pasteurella multocida DctP or Pm1525 FT SWALL:Q9CKT1 (EMBL:AE006189) (340 aa) fasta scores: E(): FT 4.5e-21, 28.78% id in 337 aa" FT /protein_id="CAE36678.1" FT /translation="MMHKTLAAALFALGLAGTAPAIAQKPVELTLSSWLPPTHAVVADF FT LMPWGEEIRKATDGRVTLRLLPKAVTNPAGHFDAVRDGLVDVTFVSHAYYPGRFQLTKF FT AVLPFSGDTATSRSIAAWDTYEKYLLKADEHKGVRLLGIYAHGPGIAFTTSKPVKQIGD FT FQGLKIRVGGGMAADVAKAVGASPIAKPAPESYELLSTGVADGVFFPAESLVSFKLDSI FT IRHATEFPGGLYSDTHAVIINRDAFARLSKQDQDTLVRLSGRHLAELAGRAWDTHDAAA FT RKVLEGGEIELVKADDALIEAVRERTKGFEQAWLDAAKAKGIDGPAALASFRAEIKQLD FT QQR" FT misc_feature complement(1476833..1477705) FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 2.4e-19" FT misc_feature complement(1477727..1477795) FT /note="Signal peptide predicted for BPP1376 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.983 between residues 23 and 24" FT CDS complement(1477851..1478810) FT /transl_table=11 FT /locus_tag="BPP1377" FT /product="conserved hypothetical protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 34.2 FT kDa protein in gbd 5'region SWALL:Q44016 (EMBL:L36817) (324 FT aa) fasta scores: E(): 6.5e-35, 41% id in 317 aa, and to FT Yersinia pestis hypothetical protein Ypo2238 SWALL:Q8ZED6 FT (EMBL:AJ414151) (333 aa) fasta scores: E(): 1.9e-31, 35.64% FT id in 317 aa" FT /protein_id="CAE36679.1" FT /translation="MRVLITGANGYIGRALAERLCALPGVPGYGALEQLTLCDLAFDAA FT PADPRVRQVAGDFADPATLAAITDPPPDLVFHLACVASGRAELEFELGLRVNLEGSLRL FT LEQLRRQGRSPGLVFTSSIAVYGAPLPALVTDDTPLAPALSYGAQKQAVEILLADYTRR FT GFVRGRAVRLPGVAPRPPAPNGAWSAFSSTLLRALAAGQPCEMPVGPQATLWLMSLPCC FT VDNLLRAAELTAQAPPPGGRTGWTLPALRVSVRDIVQAFDARSQGAATPLVSYTPRPDI FT EAQFGNQPPLQCDAAQAAGFRHDSSLPALLERAVGPPP" FT CDS complement(1478798..1479604) FT /transl_table=11 FT /locus_tag="BPP1378" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0550 SWALL:Q9I5Y6 (EMBL:AE004491) (265 aa) fasta FT scores: E(): 8.6e-34, 46.12% id in 258 aa, and to Ralstonia FT solanacearum hypothetical protein Rsc0020 or Rs01842 FT SWALL:Q8Y3G0 (EMBL:AL646057) (262 aa) fasta scores: E(): FT 1.6e-32, 43.96% id in 257 aa" FT /protein_id="CAE36680.1" FT /translation="MKLAANLTLLYPGLPLAARMAAAREDGFAGVEILFPYDQPPAQLA FT AQLREHGLALALVNTPLGAAGEKGLACVPGREADFGAALDQALALCRATGCRIVHAMAG FT MPPAPAGMDECRATLIGNLQRAAPRAAQAGVTLTLEPLNRADMPGYFYYLPEQAADIIR FT AVDHPNVGLQFDIYHNLREGLDPHAELRRVLPLVRHVQFAGPDGRHEPDPASPPVAATL FT RLLAQSGYGGWMGCEYTPRGLASAGLKAWRGAYDAACGSGGAACAS" FT misc_feature complement(1479536..1479604) FT /note="Signal peptide predicted for BPP1378 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.867) with cleavage site FT probability 0.708 between residues 23 and 24" FT CDS complement(1479601..1480497) FT /transl_table=11 FT /locus_tag="BPP1379" FT /product="probable dehydrogenase" FT /note="Similar to Escherichia coli FT 2-hydroxy-3-oxopropionate reductase GarR or B3125 FT SWALL:GARR_ECOLI (SWALL:P23523) (294 aa) fasta scores: E(): FT 6.9e-20, 33.21% id in 277 aa, and to Pseudomonas aeruginosa FT probable 3-hydroxyisobutyrate dehydrogenase Pa3312 FT SWALL:Q9HYT2 (EMBL:AE004753) (296 aa) fasta scores: E(): FT 8.3e-38, 47.97% id in 296 aa" FT /protein_id="CAE36681.1" FT /translation="MSATLAFCGAGLMGAPMIRRLLAAGHRVRVWNRSAAKAQALAADG FT AVVCATPAEAAAGAQAVLLCLTDLAAVQATVFGPHGVADVAGGLLVDHSSIEPDATRAL FT AARLLAASGRVWIDAPVSGGVAGAQAGTLSILAGGPAAAIEAAQPWLRAYAGRVTRLGD FT TGAGQIGKLCNQTIVATTVNAIAEAVALARRNGIDVAALDTALAGGWADSVLLRIFVPR FT MTAPVDQPLGALQTMLKNLENVAALAAASGTQLRGLQGVLDSYRTAAARGLGPGDLSDI FT VRVAWPERPAAPTREPA" FT misc_feature complement(1479985..1480494) FT /note="HMMPfam hit to PF03446, NAD binding domain of FT 6-phosphogluconate dehydrogenase, score 0.00021" FT misc_feature complement(1480429..1480497) FT /note="Signal peptide predicted for BPP1379 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.715) with cleavage site FT probability 0.695 between residues 23 and 24" FT CDS complement(1480494..1482206) FT /transl_table=11 FT /gene="ilvD" FT /locus_tag="BPP1380" FT /product="dihydroxy-acid dehydratase" FT /EC_number="4.2.1.9" FT /note="Similar to Mycobacterium tuberculosis dihydroxy-acid FT dehydratase IlvD or Rv0189c or Mt0199 or Mtci28.28C FT SWALL:ILVD_MYCTU (SWALL:O07433) (575 aa) fasta scores: E(): FT 7.6e-93, 49.01% id in 557 aa, and to Rhizobium loti FT dihydroxyacid dehydratase Mll1102 SWALL:Q98LB3 FT (EMBL:AP002996) (586 aa) fasta scores: E(): 8.1e-109, FT 56.17% id in 559 aa" FT /protein_id="CAE36682.1" FT /translation="MSLHKHRSRMVTQGLTRTPHRAFLRATGFDDAALEKSMVGIVSTQ FT GENTPCSMALGPQADRARLGVAAGGGVPVSFSTISISDGTSMNHAGMRMSLLSRETIAD FT SVELVVRGHAYDALVAFAGCDKTLPAMMMAIVRLNVPAVFLYSGATLPGHAASGQVTIL FT DTIEAVGRVQHGTMPAAELKAMERTCTPSAGSCPGQFTANTMAMVGEALGLSPLGSAMM FT PAVYSERLAIAQRAGEHVMRALAAGGPLPRQLVTRASLENACAAVAATGGSTNAALHIP FT AIAHEAGIAFTLDDVARVFKRTPLIADLQPGGRYLARDLHEAGGVPVVLKALLDGGHID FT GSVLTLDGRTLAEALADTPAPDGKVVRACGQALHPTGGVAVLKGNLSPDGALLKIAGLK FT SLKFSGPARVFENEEACMRAVSTHAYQPGEVLVIRNEGPRGGPGMREMLSVTAALYGQG FT MGEKVALLTDGRFSGATRGLCIGYAGPEAAAGGPIALLRDGDMIHIDAEADTLDVALSD FT EELARRRAAYQAPPQARLAGALEKYAALVRPACLGAVTHSGQVDWPYETPEAE" FT misc_feature complement(1480539..1482101) FT /note="HMMPfam hit to PF00920, Dehydratase family, score FT 1.3e-240" FT misc_feature complement(1480782..1480817) FT /note="PS00887 Dihydroxy-acid and 6-phosphogluconate FT dehydratases signature 2." FT misc_feature complement(1481805..1481837) FT /note="PS00886 Dihydroxy-acid and 6-phosphogluconate FT dehydratases signature 1." FT CDS complement(1482247..1482927) FT /transl_table=11 FT /locus_tag="BPP1381" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Rhizobium loti probable transcriptional FT regulator Mlr1038 SWALL:Q98LF9 (EMBL:AP002996) (226 aa) FT fasta scores: E(): 3.8e-22, 39.62% id in 212 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT Pa5525 SWALL:Q9HT48 (EMBL:AE004965) (246 aa) fasta scores: FT E(): 3.7e-17, 35.18% id in 216 aa" FT /protein_id="CAE36683.1" FT /translation="MPALTHPDPLVHTSVNEAIYRRLRDHLMRGDYAAGAVLGIQELAD FT AFGTSAMPVREALRRLVTQRALEPMKSRSVRVPVISRASLEDIRRARVLIEGHVTAWAV FT EHITAPELAELRALADQIGRSLSDTASVQAGLENNQRFHFTIYRAARSDSMLATIESLW FT LQSGPYLRATRELMHSDERPSAELHAAIVDAIARRDAESARAVMAQDISWAFDRLQALQ FT PAMP" FT misc_feature complement(1482265..1482294) FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT misc_feature complement(1482697..1482873) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 0.00024" FT CDS complement(1483024..1483710) FT /transl_table=11 FT /locus_tag="BPP1382" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Rhizobium loti probable transcriptional FT regulator Mlr2114 SWALL:Q98J42 (EMBL:AP002999) (223 aa) FT fasta scores: E(): 2.2e-26, 45.45% id in 198 aa, and to FT Agrobacterium rhizogenes Riorf32 protein SWALL:Q9F5G0 FT (EMBL:AP002086) (217 aa) fasta scores: E(): 2.6e-12, 32.99% FT id in 197 aa" FT /protein_id="CAE36684.1" FT /translation="MTLTALPADPPPADALDLDLAVEQLEEDIVFGRLFPRQRLTEDEL FT MARFGLKRHAVRQVLAQLEQRGAVERKRNVGAEVRAFTAREVMDLYDLRELLETRAAER FT IALPVDEARLAALVAVQREHDAAVAAGNARRVFRSNQRFHRELFGLLDNPVLQQAIEEY FT ARRTHPIRFGSLAAAGYRERARQEHWAMIQALRQGDRAALVALCRNHLLPSRDAYLAAA FT GLRASA" FT misc_feature complement(1483474..1483650) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 4e-08" FT misc_feature complement(1483522..1483596) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(1483717..1485459) FT /transl_table=11 FT /gene="ilvD" FT /locus_tag="BPP1383" FT /product="putative dihydroxy-acid dehydratase" FT /note="Similar to Agrobacterium tumefaciens dihydroxy-acid FT dehydratase IlvD or Atu3971 or Agr_l_1769 SWALL:AAL44773 FT (EMBL:AE009327) (574 aa) fasta scores: E(): 1.3e-95, 47.92% FT id in 553 aa, and to Rhizobium meliloti putative FT dihydroxy-acid dehydratase protein IlvD1 or R00822 or FT Smc00884 SWALL:Q92RP0 (EMBL:AL591785) (574 aa) fasta FT scores: E(): 4.5e-92, 49.09% id in 550 aa" FT /protein_id="CAE36685.1" FT /translation="MTQRDQGGKPPGGLSKGLTNYGDTGFSLFLRKAFIKGAGYTDDAL FT ARPVIGIVNTGSSYNPCHGNAPQLVEAVKRGVMLAGGLPVDFPTISVHESFSQPTSMYL FT RNLMSMDTEEMIRAQPMDAVVLIGGCDKTVPAQLMGAASAGVPAIQLVTGSMLTGSHRG FT ERVGACTDCRRYWGRYRADEIDTAEITDVNNQLVASVGTCSVMGTASTMACLTEALGMM FT ISGGASAPAVTADRIRVAERTGATAVAMAAARLTPERILTGKAIENALRVLLAIGGSTN FT GIVHLTAIAGRLGIDIDLTGLDRMSRETPVLVDLKPSGQHYMEDFHKAGGMPALLRELR FT PLLHLDALTVSGRTLGEELDAAPAPFAQEVIRAFDAPIYPVGGLAVLRGNLAPGGAIIK FT QSAADARLMEHEGRAVVFEDAEDMARRIDDDALDVTADDILVLKRIGPTGAPGMPEAGY FT MPIPRKLARAGVKDMVRVSDGRMSGTAAGTIVLHVTPEAAIGGPLAHVRNGDRIRLSVR FT QREISLLVSEAELAQRAAAQPIERPQAERGYRKLFLDTVTQADQGVDFDFLRAPASKQT FT VPPR" FT misc_feature complement(1483762..1485321) FT /note="HMMPfam hit to PF00920, Dehydratase family, score FT 1.2e-189" FT misc_feature complement(1485040..1485072) FT /note="PS00886 Dihydroxy-acid and 6-phosphogluconate FT dehydratases signature 1." FT CDS 1485692..1486696 FT /transl_table=11 FT /locus_tag="BPP1384" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1.7e-46, 45.12% id in 328 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 ra1058 or sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 2.1e-52, 45.87% FT id in 327 aa" FT /protein_id="CAE36686.1" FT /translation="MSDRQSARLPRRAALCSMLALCAGFALQPVAAQSAYPDRPIRMIV FT PYPPGGATDVIGRVLAKEMSGALGQSVVVENRAGAAGNIGADVVAKATPDGYTILMGAM FT TSHAINAVLYQGRVSYDIEKSFAPVAIVGTVPLVFVVNPAVPADSLQSLIALAKSKPGY FT LTMASAGNGSPQHLAGEMFKRVAGVDLLHVPYKGSGPAMTDLMGGQVLSMIETVPAAQG FT NVKGGKLRALAVASAQRVESLPDVPTTAEAGLPNFQVSSMFGIAAPAGTPVPVVERLNA FT VLKEALAKPEVQTALLNQGAISTWTTPADAAARISAERQQWATVIAEAGVKAE" FT misc_feature 1485692..1485784 FT /note="Signal peptide predicted for BPP1384 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.485 between residues 31 and 32" FT misc_feature 1485728..1485796 FT /note="1 probable transmembrane helix predicted for BPP1384 FT by TMHMM2.0 at aa 13-35" FT misc_feature 1485857..1486684 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3e-115" FT CDS complement(join(1486710..1486862,1486867..1487355, FT 1487357..1488349)) FT /pseudo FT /transl_table=11 FT /gene="alkJ" FT /gene_synonym="alcO" FT /locus_tag="BPP1385" FT /product="alcohol dehydrogenase [acceptor] (Pseudogene)" FT /EC_number="1.1.99.-" FT /note="Similar to Pseudomonas oleovorans alcohol FT dehydrogenase [acceptor] AlkJ or AlcO SWALL:ALKJ_PSEOL FT (SWALL:Q00593) (558 aa) fasta scores: E(): 9e-80, 41.54% id FT in 532 aa, and to Ralstonia solanacearum putative choline FT dehydrogenase lipoprotein oxidoreductase beta or Rsc3345 or FT Rs02583 SWALL:Q8XU48 (EMBL:AL646074) (544 aa) fasta scores: FT E(): 1.6e-87, 46.4% id in 543 aa" FT /db_xref="PSEUDO:CAE36687.1" FT misc_feature complement(join(1486752..1486862,1486867..1487355, FT 1487357..1488325)) FT /note="HMMPfam hit to PF00732, GMC oxidoreductase, score FT 6.3e-179" FT misc_feature complement(1487525..1487569) FT /note="PS00624 GMC oxidoreductases signature 2." FT misc_feature complement(1488023..1488094) FT /note="PS00623 GMC oxidoreductases signature 1." FT CDS complement(1488366..1489373) FT /transl_table=11 FT /locus_tag="BPP1386" FT /product="putative exported protein" FT /note="Similar to Brucella melitensis aliphatic FT sulfonates-binding lipoprotein Bmeii0109 SWALL:Q8YDR6 FT (EMBL:AE009649) (319 aa) fasta scores: E(): 1.5e-23, 30.09% FT id in 329 aa, and to Streptomyces coelicolor putative FT lipoprotein Sc8g12.22 SWALL:Q9KYY3 (EMBL:AL355753) (340 aa) FT fasta scores: E(): 3.9e-20, 28.04% id in 328 aa" FT /protein_id="CAE36688.1" FT /translation="MMNPQRRTLLKTGALAAAMAGIGIPSLARARDKVRVGYLHTPAVD FT GQIWTGQQTGAFAKHGLDLELIQFTTGLELFQAMIGGSLDMLSTGAVVSNFPARGQGKV FT FLVNNIEYATAQLWVRDDAGIKTLADLKGKKISTTTGTTAHVFLDRALRSVGLQAGKDV FT QIVNQRMAEAVTSFISGAVPAVALWVPFDVTIRQKLPGARKLLDASTFYPEAAIVGGWA FT ARNDYYDKNPKIINALIQAWAETNDYLLSHTDEALVALQKNHYQQVPLPDLKEQFKASK FT YFTAAEWRQRYADGTVTRWLQQVTDFFVQSANIAQPVPAERYFDPKPYLEAVRA" FT misc_feature complement(1489284..1489373) FT /note="Signal peptide predicted for BPP1386 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.887 between residues 30 and 31" FT CDS complement(1489396..1490217) FT /transl_table=11 FT /locus_tag="BPP1387" FT /product="ATP-binding component of ABC transporter" FT /note="Similar to Streptomyces coelicolor putative FT ABC-transport protein, ATP-binding component Sc8g12.21 FT SWALL:Q9KYY4 (EMBL:AL355753) (270 aa) fasta scores: E(): FT 2.8e-40, 46.79% id in 265 aa, and to Agrobacterium FT tumefaciens ABC transporter, nucleotide binding/ATPase FT protein Atu0159 or Agr_c_259 SWALL:AAK85980 (EMBL:AE008990) FT (266 aa) fasta scores: E(): 7.9e-40, 46.56% id in 262 aa" FT /protein_id="CAE36689.1" FT /translation="MSATPASDVRIRFEDVCVDYPTADGPMRVLDGINYEIRQGEFVSV FT IGPSGCGKTTMMGLVGGFVQPTAGRVLLDGQPVGGPGPDRGVIFQEYGVFPWLTVRENI FT AFGLNLRSNRVAAGERAQICQRYMTLMGLSDFAHHYPKHLSGGMRQRLALARAYAVKPQ FT FLLMDEPFGALDAQTRSAMQDLLLQVQMTEGKTVMLITHSVEEAIYLSSRIVVVTARPA FT RIRTIIDVPFGYPRAENLHEDPRFGELRSHIRALVMEEYAKQARQTVRLSD" FT misc_feature complement(1489558..1490100) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.7e-55" FT misc_feature complement(1489744..1489788) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1490056..1490079) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1490237..1491004) FT /transl_table=11 FT /locus_tag="BPP1388" FT /product="permease component of ABC transporter" FT /note="Similar to Escherichia coli taurine transport system FT permease protein TauC or SsiC or B0367 SWALL:TAUC_ECOLI FT (SWALL:Q47539) (275 aa) fasta scores: E(): 6.8e-30, 34.48% FT id in 261 aa, and to Brucella melitensis taurine transport FT system permease protein tauc bmeii0107 SWALL:Q8YDR8 FT (EMBL:AE009649) (246 aa) fasta scores: E(): 4e-36, 46.05% FT id in 228 aa" FT /protein_id="CAE36690.1" FT /translation="MKRRSALMRALLVLAPWLLIVLLWYGIRASGLVSPALVPSPGEVW FT TRFVALMQARLPHDILMSTQRVFVGVCLGTLLAVPVGFVLGWYRGVRSFIDPVINFFRA FT LPPIALIPLVIVYFGIGETAKIAILFYASFFAGVIVMYEGISQINPIFVRVAKTLGATD FT GEIFRKVIVPLTIPHMLTALRVALGVAWATLVASELIAAQQGLGALIQDASSFFQLDII FT YVGIICIGFIALAMDLALRAAARRLVAWQDRIA" FT misc_feature complement(join(1490273..1490338,1490384..1490449, FT 1490561..1490626,1490642..1490707,1490744..1490809, FT 1490924..1490989)) FT /note="6 probable transmembrane helices predicted for FT BPP1388 by TMHMM2.0 at aa 5-27, 65-87, 99-121, 126-148, FT 185-207 and 222-244" FT misc_feature complement(1490360..1490575) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 4.8e-12" FT misc_feature complement(1490486..1490572) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature complement(1490588..1490635) FT /note="PS00038 Myc-type, 'helix-loop-helix' dimerization FT domain signature." FT misc_feature complement(1490912..1491004) FT /note="Signal peptide predicted for BPP1388 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.899) with cleavage site FT probability 0.228 between residues 31 and 32" FT CDS 1491104..1491829 FT /transl_table=11 FT /locus_tag="BPP1389" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Deinococcus radiodurans transcriptional FT regulator, GntR family Dra0211 SWALL:Q9RYU6 (EMBL:AE001863) FT (279 aa) fasta scores: E(): 1.4e-13, 30.04% id in 233 aa, FT and to Ralstonia solanacearum putative DNA-binding FT transcriptional regulatory transcription regulator protein FT Rsp0079 or rs05542 SWALL:Q8XTM7 (EMBL:AL646076) (273 aa) FT fasta scores: E(): 1.3e-14, 31.53% id in 241 aa" FT /protein_id="CAE36691.1" FT /translation="MAINFHDSPIPRYLQLADLMRQRIARGQWGQGHRLPSLEELVAEF FT GVARVTVRQAIDVLTREGLVSPQQGRGTFVTGLPPNDRWLQVQTTLAELAKVYRDTKPK FT IVNIDETITNPPLTAQDGVAAERYVYMRRVHEREGRPYCVINIYLDEQIFRRDPVRYRN FT ETVIPLLVSDPALRIARAHQVLTIGTADMEVAGHLQVPVNTPIAEVRRLFLDEAGKVVY FT LSEVSYRGDFIHLEMNLIP" FT misc_feature 1491149..1491328 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 8.6e-18" FT CDS 1491837..1492985 FT /transl_table=11 FT /locus_tag="BPP1390" FT /product="putative mandelate racemase/muconate lactonizing FT enzyme" FT /note="Similar to Streptomyces coelicolor putative racemase FT Sce65.16C SWALL:Q9RKF7 (EMBL:AL133236) (361 aa) fasta FT scores: E(): 4e-21, 32.43% id in 370 aa, and to FT Agrobacterium tumefaciens hypothetical protein Atu3139 or FT Agr_l_3340 SWALL:AAL43955 (EMBL:AE009244) (378 aa) fasta FT scores: E(): 6.4e-26, 32.36% id in 377 aa" FT /protein_id="CAE36692.1" FT /translation="MTRDAAPITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVED FT SDGAVGWGEVWCNFPACGAEHRARLVETVLAPLLTARAFADPAQAFAHLEARTAVLAIQ FT TGEPGPLAQAIAGLDIALCDLAARRAGEPLWAWLGGSGDRIGVYASGINPENPEDVVAR FT KAAEGYRAFKLKVGFDDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGP FT AQLDWLEEPLRADRPAAEWAELAQAAPMPLAGGENIAGVAAFETALAARSLRVMQPDLA FT KWGGFSGCLPVARAVVAAGLRYCPHYLGAGIGLQASAHLLAAVPGLASPGLLEVDANDN FT PLRSLLSPALATLHEGRITLGGAPGLGVTPDLAALRAACAAR" FT misc_feature 1491858..1492253 FT /note="HMMPfam hit to PF02746, Mandelate racemase / FT muconate lactonizing enzyme, N-terminal domain, score FT 4.9e-12" FT misc_feature 1492212..1492973 FT /note="HMMPfam hit to PF01188, Mandelate racemase / FT muconate lactonizing enzyme, C-terminal domain, score FT 2.1e-10" FT misc_feature 1492434..1492529 FT /note="PS00909 Mandelate racemase / muconate lactonizing FT enzyme family signature 2." FT CDS complement(1493001..1493921) FT /transl_table=11 FT /locus_tag="BPP1391" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa2534 SWALL:Q9I0V0 FT (EMBL:AE004681) (303 aa) fasta scores: E(): 9.5e-55, 50.34% FT id in 294 aa, and to Rhizobium loti probable FT transcriptional regulator Mlr1983 SWALL:Q98JE3 FT (EMBL:AP002998) (297 aa) fasta scores: E(): 5.4e-54, 47.47% FT id in 297 aa" FT /protein_id="CAE36693.1" FT /translation="MDRFDSLQLFTRIVELGSFSRAAAALDIPRATATHAIKQLEARLG FT ARLLDRTTRHVRATPDGQAFYERCVHVLSELDDAQSSLQRVASNPRGLLRVDMHSTHAT FT KIVLPRIDDFRARYPGIDLAVSGGDRLVDLVREGIDCVIRAGNPRDSSLVARRLAVMPQ FT VICASPEYLAAFGAPRHPDELAAHRVVKFFAASAAVDYPLELRIGGEIRAFALNGWISV FT SDAENYVVCALRGCGLIQLPRFHVEDDLRAGRLVEVLSDWPSPDLPVSALYPSHRHLSP FT RVRVFVDWLGKLYEEAFPAAAPARR" FT misc_feature complement(1493037..1493663) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 6.3e-46" FT misc_feature complement(1493733..1493912) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 6.4e-17" FT misc_feature complement(1493778..1493870) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 1494036..1494776 FT /transl_table=11 FT /locus_tag="BPP1392" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Bacillus subtilis 3-oxoacyl-[acyl-carrier FT protein] reductase FabG SWALL:FABG_BACSU (SWALL:P51831) FT (246 aa) fasta scores: E(): 1.1e-27, 42.91% id in 240 aa, FT and to Pseudomonas aeruginosa probable short-chain FT dehydrogenase Pa1470 SWALL:Q9I3P2 (EMBL:AE004576) (245 aa) FT fasta scores: E(): 5.5e-57, 71.6% id in 243 aa" FT /protein_id="CAE36694.1" FT /translation="MNMDISKAAIVTGGSRGIGRAIAARLAADGFAVVVNYAGNGAKAH FT ATVAAIESAGGKAIAIQGDVGKPQDVANLFAQARAAFGRIDVVVNSAGVMPMASIDAAN FT LDAFDQVIATNLRGAFLVLAQAAANLGDDGRIIALSTSVIAKSLPGYGPYIASKAGVEG FT LVHVLANELRGRNITVNAIAPGPVGTDLFFNGKSEEAVASIARQAPMERIGMPDEIAAA FT VSFLAGPDGRWVNAQVLRVNGGFA" FT misc_feature 1494048..1494770 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 9.6e-66" FT CDS complement(1494908..1495681) FT /transl_table=11 FT /locus_tag="BPP1393" FT /product="putative lipoprotein" FT /note="Similar to Salmonella typhi putative lipoprotein FT Sty0979 SWALL:Q8Z804 (EMBL:AL627268) (253 aa) fasta scores: FT E(): 3.5e-46, 53.3% id in 257 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa0277 SWALL:Q9I6L3 FT (EMBL:AE004465) (252 aa) fasta scores: E(): 2.3e-50, 55.85% FT id in 256 aa" FT /protein_id="CAE36695.1" FT /translation="MMKSKTKLLGGALAASLLLAGCASMKSMDTNSLLSAGSDMAKAAN FT LSDADIIQLSDAACKQSDQESKIAPAGNKYSVRLTKLMRGFGNMTLNGQKVNYKVYMTE FT DVNAWAMGNGCVRVYTGLMDLMNDDELRGVIGHEMGHVALGHTKKAMQTAYAVSAARQA FT AGAAGNSVVASLSASQLGEMTEKFINAQFSQSQETAADDFSFDLLTEKKMNRKGLVTAF FT QKLAELDGGESSMFSSHPSSPDRAARMEKRLQAGK" FT misc_feature complement(1494914..1495414) FT /note="HMMPfam hit to PF01435, Peptidase family M48, score FT 5.2e-05" FT misc_feature complement(1495559..1495681) FT /note="Signal peptide predicted for BPP1393 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.611 between residues 41 and 42" FT misc_feature complement(1495616..1495648) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1495961..1496383 FT /transl_table=11 FT /locus_tag="BPP1394" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT Mlr7891 SWALL:Q984Q5 (EMBL:AP003012) (140 aa) fasta scores: FT E(): 4.5e-33, 64.49% id in 138 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa4518 SWALL:Q9HVQ4 FT (EMBL:AE004865) (141 aa) fasta scores: E(): 1.2e-11, 39.7% FT id in 136 aa" FT /protein_id="CAE36696.1" FT /translation="MQANLTVITLGVDDLERALRFYRDGLGLPTAGIVGREFEHGAVVF FT IDLQAGLKLALWPRRSLAHDTGLPLAPPSATELSLGHNVTSRAEVDAVMAQAAQAGAAI FT VKPAGDTFWGGYAGYFQDPDGHLWEVVHNPQLAPAG" FT misc_feature 1495991..1496374 FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily, score 4.7e-12" FT CDS 1496505..1497698 FT /transl_table=11 FT /locus_tag="BPP1395" FT /product="putative membrane protein" FT /note="Similar to Ralstonia solanacearum probable multidrug FT transport transmembrane protein Rsp0429 or Rs00888 FT SWALL:Q8XSN8 (EMBL:AL646078) (399 aa) fasta scores: E(): FT 3.8e-84, 60.93% id in 384 aa, and to Rhizobium loti FT hypothetical protein Mlr8412 SWALL:Q983A8 (EMBL:AP003014) FT (405 aa) fasta scores: E(): 1e-54, 43.52% id in 386 aa" FT /protein_id="CAE36697.1" FT /translation="MPSRSAQSSSNVLRLAAAQALAGANTTVVYATAAIIGEALAPSKS FT LATLPISVFVVGMAASTLPAGAVAQRHGRRAAFMLGTLCGVLLGLLAALGIYLESFALF FT CAAMAFGGAYAAVVLTFRFAAAECVEPHRKARALSTVLAGGVLAGVLGPQLVSYTMDAW FT SGHVFAGTYLAASAVAVLAAVVLGGVDLPRPARAAAAGGRPLRVIARQPRFIAAVVCGV FT VTYMLMNFLMTSAPLAMRMHGLSQHASNLGVQWHVIAMYAPSFVAGGLITRHGAVPVVA FT AGLLLTAAAAVVGLAGMDAWHFWVSLTLLGVGWNFGFAGASAMVLECHLPQERTRVQAA FT NDFIIFGTMVVGSFVSGDLLMRYGWEVVCWLALPPLAVAAFALRWFKPLPAGAAGRA" FT misc_feature 1496505..1496597 FT /note="Signal peptide predicted for BPP1395 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.971) with cleavage site FT probability 0.415 between residues 31 and 32" FT misc_feature join(1496562..1496630,1496643..1496711,1496730..1496798, FT 1496811..1496879,1496916..1496975,1497003..1497071, FT 1497147..1497215,1497258..1497317,1497330..1497398, FT 1497426..1497494,1497531..1497584,1497594..1497662) FT /note="12 probable transmembrane helices predicted for FT BPP1395 by TMHMM2.0 at aa 20-42, 47-69, 76-98, 103-125, FT 138-157, 167-189, 215-237, 252-271, 276-298, 308-330, FT 343-360 and 364-386" FT CDS complement(1497705..1498616) FT /transl_table=11 FT /locus_tag="BPP1396" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa2469 SWALL:Q9I113 FT (EMBL:AE004674) (304 aa) fasta scores: E(): 2.3e-38, 38.25% FT id in 298 aa, and to Salmonella typhimurium, and Salmonella FT typhi putative transcriptional regulator, LysR family FT Stm2180 or Sty2410 SWALL:Q8XG81 (EMBL:AE008797) (302 aa) FT fasta scores: E(): 1.2e-33, 37.74% id in 302 aa" FT /protein_id="CAE36698.1" FT /translation="MLTNWIDRLRPRHLRLLIRLCETGNLTEVAIEYGISQPALSKWLK FT DLEADIGQRLFVREPRGVTPTACARELQAHARAIIGRLERARTAVDHIASGFAGHLSVG FT FSPVVGPVVLPESIRRFRAAYPDVLVSVIEASIDLLLPGLRNGDFDIVVGRLEEVAMPE FT DVRCETLYDEPVCLVAGRAHPLAGRRRISWEDAQAYPWISPQQGTPLRMRLEMELAVAG FT QPLPRHAVESTSVQTNVALLDRSDMIAPMSRRLAEHFQRQGVLRILPLTLGSGGPIGML FT WRADGVHGTHTAHFIACLRQAV" FT misc_feature complement(1497711..1498337) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 5.3e-41" FT misc_feature complement(1498407..1498586) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.1e-18" FT misc_feature complement(1498452..1498544) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 1498743..1500329 FT /transl_table=11 FT /locus_tag="BPP1397" FT /product="probable sulfatase" FT /note="Similar to Burkholderia caryophylli phosphonate FT monoester hydrolase PehA SWALL:Q45087 (EMBL:U44852) (514 FT aa) fasta scores: E(): 2.1e-13, 28.98% id in 552 aa, and to FT Pseudomonas aeruginosa probable sulfatase Pa2333 FT SWALL:Q9I1E5 (EMBL:AE004659) (538 aa) fasta scores: E(): FT 1.7e-09, 31.65% id in 537 aa" FT /protein_id="CAE36699.1" FT /translation="MSQPNFLLFITDQHRADHLGAYGNSQIRTPALDALARRGWLAERF FT YVASPICMPNRATLMTGRMPSAHGARHNGIPLSQRATTFVERLRQAGYGTALVGKSHLQ FT NMTGNGPVWPRPQDPPAEGEAWAPEPGDYDQEWGPLWREDPAHDLATPFYGFSQVDLAV FT DHGDRVWGHYWRWLQREHPEVAAQAGPDHALPAPGFELVRAGQAWRTRVPESCSTTAYL FT GRRTMQALDGYAQRGQPFFIQCSFPDPHHPFTPPGKYWDMYRPEDVELPASFHASAAAG FT RQPPPHVQWMYAQRDSGRAVKHTPAMFACTEREAREAIALNYGSISHIDHTVGEVLAHL FT QRLGLADNTVVIFTSDHGDYLGDHQLLWKGPVHYQSVIRTPFIWADPAGAQGARSDALC FT STTDIAPTILARAGLLPYNGIQGADLGALMRGEQAAPREAVLIEEEGQRVMFGFDKRVR FT MRTLQTGRYRMSVYHGVSWGELYDLREDPLELRNLWDEPGSAALRQDLLFQLAQNLIGH FT GETSPHPTALA" FT misc_feature 1498752..1500203 FT /note="HMMPfam hit to PF00884, Sulfatase, score 7.9e-27" FT misc_feature 1499022..1499045 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1500371..1501348 FT /transl_table=11 FT /locus_tag="BPP1398" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 9.3e-35, 39.75% id in 322 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 4.5e-37, 38.67% FT id in 331 aa" FT /protein_id="CAE36700.1" FT /translation="MRIFQALRHAALAAALSLGAAAAATAAYPDKPVRLVVNFTPAGPL FT DLLARLVAERASRELGQTVIVENRAGAGGNIGADVVAKSAPDGYTLLITTDTLATVNPF FT VYASMPADPFKDLQPVALTGTFNQVLVVQPSLGVRNLADYMAYLRQHGGTYASAGNATP FT GHLTFESLRQALDLDVTHVPYRGTAPAVNDLLGGQVEAGFLVVPGVLQHIQAGKLVPLA FT VSGAQRDAALPDVPTIAESGLAQVRDFDTSFGYLLMAPAGVPDEAVQAWQRVLARIYAS FT PEFLERLAALDIAPTFGDAQQAAQWMRTRAARWEKVVAAAGIKP" FT misc_feature 1500371..1500448 FT /note="Signal peptide predicted for BPP1398 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.605 between residues 26 and 27" FT misc_feature 1500389..1500457 FT /note="1 probable transmembrane helix predicted for BPP1398 FT by TMHMM2.0 at aa 7-29" FT misc_feature 1500512..1501339 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.7e-80" FT CDS complement(1501369..1501881) FT /transl_table=11 FT /locus_tag="BPP1399" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE36701.1" FT /translation="MMRHERLRFWLAGLAAAATGWLCYAGLARLAGALGVATWIPYPAL FT RRQWLLIGESWQSAEFSGAIADASVFLTALAAVAAYYCARIVYHLSFAPVRQRRARWLI FT AGWIVGTVAMVALSQSLGWLYGAFPGFARIGWLSAALGFAVLAGAASGFARAWGRLMRA FT RKVPATE" FT misc_feature complement(join(1501411..1501476,1501507..1501572, FT 1501612..1501677,1501795..1501860)) FT /note="4 probable transmembrane helices predicted for FT BPP1399 by TMHMM2.0 at aa 7-29, 68-90, 103-125 and 135-157" FT misc_feature complement(1501789..1501881) FT /note="Signal peptide predicted for BPP1399 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.348 between residues 31 and 32" FT CDS 1502380..1503885 FT /transl_table=11 FT /locus_tag="BPP1400" FT /product="probable membrane protein" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein Rsc0793 or Rs05044 SWALL:Q8Y197 FT (EMBL:AL646061) (500 aa) fasta scores: E(): 4.1e-134, 72.2% FT id in 500 aa, and to Agrobacterium tumefaciens hypothetical FT protein Atu0118 or Agr_c_184 SWALL:Q8UJ20 (EMBL:AE008986) FT (501 aa) fasta scores: E(): 3.6e-122, 65.46% id in 501 aa" FT /protein_id="CAE36702.1" FT /translation="MELLQNLALGFSVAFTPENLLYALLGCVLGTLVGVLPGLGPVPTI FT AMLLPITYVLPPVAGLIMLAGIYYGTQYGGATTAILVNLPGETSAVVTVLDGHQMARNG FT RAGAALALAAIGSFFAGTVATMLIAAFAPPLAEVAFKFGPAEYFSLMVLGLIGAVVLAS FT GSILKAVAMIILGLLLGMVGTDVNSGVARYDFGIPELQDGIDFAIVAMGVFGFAEILTN FT LEQKENRVDITDKVGSLYPNKQEMREAAPAIVRGTALGSCLGILPGGGSVLSAFASYSL FT EKKLSRNPERFGKGHPAGLAGPESANNAGAQTSFIPLLTLGIPGNAVMALMVGAMTIHN FT IQPGPQVMTSHPELFWGLIASMWIGNLMLVVLNLPLVGLWVKLLKVPYRILYPAILVFC FT TIGVYSLNYNVFDVFVTAIFGVVGYVWSKLKCEGAPLLLGLVLGPMMEENFRRALLLSR FT GDFLTFVERPLSASLLGAAALLVIIVALPSIRKKRDETFVEEE" FT misc_feature 1502434..1503693 FT /note="HMMPfam hit to PF01970, Integral membrane protein FT DUF112, score 7e-115" FT misc_feature join(1502437..1502505,1502518..1502586,1502701..1502769, FT 1502812..1502880,1502884..1502952,1502995..1503048, FT 1503328..1503396,1503454..1503522,1503541..1503609, FT 1503769..1503837) FT /note="10 probable transmembrane helices predicted for FT BPP1400 by TMHMM2.0 at aa 44-66, 71-93, 132-154, 169-191, FT 193-215, 230-247, 341-363, 383-405, 412-434 and 488-510" FT CDS complement(1503983..1504447) FT /transl_table=11 FT /locus_tag="BPP1401" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti probable transcriptional FT regulator Mlr1478 SWALL:Q98KH0 (EMBL:AP002997) (148 aa) FT fasta scores: E(): 1.8e-17, 47.79% id in 136 aa, and to FT Brucella melitensis transcriptional regulator, MarR family FT Bmeii0520 SWALL:Q8YCK8 (EMBL:AE009688) (145 aa) fasta FT scores: E(): 8.8e-16, 49.58% id in 121 aa" FT /protein_id="CAE36703.1" FT /translation="MSDVQTSSPSPAPPRGRKLDKADFAALADLRYALRRFMAFSEAAA FT TESGLTAQQHQALLAIKASDDTLSVGELADRLLIRHHSAGELVDRLARMDMVRRIPSNA FT DRRRVLVALTPLAEHTLDTLSAAHVEELRSVGPLLRTLLSYFDSPAYRRK" FT CDS complement(1504557..1504982) FT /transl_table=11 FT /gene="stbB" FT /locus_tag="BPP1402" FT /product="putative plasmid stability protein" FT /note="Similar to Pseudomonas syringae plasmid stability FT protein StbB SWALL:STBB_PSESM (SWALL:Q52562) (139 aa) fasta FT scores: E(): 1.3e-20, 46.76% id in 139 aa, and to Rhizobium FT sp. putative plasmid stability protein Y4jK FT SWALL:Y4JK_RHISN (SWALL:P55511) (140 aa) fasta scores: E(): FT 2.9e-21, 48.57% id in 140 aa" FT /protein_id="CAE36704.1" FT /translation="MILLDTDVLLEPLRPAPDPAVAAWLDAQHVETLYLAAPGAAEIQL FT GLARLPRGKRAEALRHEFERRVLPLFMGHVLPFDTAAADAYAAVMMRAAAAGHALCAID FT GCIAAIATAHGLAIATRHPARFEAAGLAAVDPWHAAA" FT misc_feature complement(1504572..1504979) FT /note="HMMPfam hit to PF01850, PIN domain, score 7.3e-13" FT CDS complement(1504979..1505218) FT /transl_table=11 FT /gene="stbC" FT /locus_tag="BPP1403" FT /product="putative plasmid stability protein" FT /note="Similar to Pseudomonas syringae plasmid stability FT protein StbC SWALL:STBC_PSESM (SWALL:Q52561) (103 aa) fasta FT scores: E(): 8.2e-12, 51.76% id in 85 aa, and to Rhizobium FT sp. putative plasmid stability protein Y4jJ FT SWALL:Y4JJ_RHISN (SWALL:P55510) (85 aa) fasta scores: E(): FT 1.5e-13, 60% id in 85 aa" FT /protein_id="CAE36705.1" FT /translation="MSSITVRNVPEEVHRALRVRAATHGRSTEAEIRAILENAVLPDGR FT VKLGTLLSHIGRGARGMDLTIERNPAPARPASFE" FT CDS complement(1505292..1506134) FT /transl_table=11 FT /locus_tag="BPP1404" FT /product="putative AraC-family transcriptional regulator" FT /note="Similar to Xylella fastidiosa transcriptional FT regulator Xf1254 SWALL:Q9PDX5 (EMBL:AE003959) (280 aa) FT fasta scores: E(): 5.5e-44, 45.98% id in 274 aa, and to FT Agrobacterium tumefaciens transcriptional regulator, AraC FT family Atu4575 or Agr_l_593 SWALL:Q8U779 (EMBL:AE009385) FT (321 aa) fasta scores: E(): 4.1e-15, 31.37% id in 290 aa" FT /protein_id="CAE36706.1" FT /translation="MDRLSALLERFRVRTALLHAGTLCGHHRFEAQPGRAFLHVLRRGD FT MEVRHRPGETALPRLRLAEPTLLFYPRPLHHEFINPPAEGPDLTCATLDFEGGDRHPLV FT RSLPPVVCVPLDAVAGLRPALDLLFAEADQVRCGSRVLADRLFEVVLIQLLRWMLDHPA FT QVGVSNGLIMGLSDPRLAKALAALHGAPGQAWPLTRMADIAGMSRSAFAAAFKTATGVT FT PAAYLADWRLSLAASMLRAGHPMKRIAPELGFAGVPALSKAFRQRMGASARQWLDAQR" FT misc_feature complement(1505304..1505432) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.85" FT misc_feature complement(1505319..1505444) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT misc_feature complement(1505451..1505588) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 8e-07" FT misc_feature complement(1505466..1505600) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT CDS 1506272..1506817 FT /transl_table=11 FT /gene="mip" FT /locus_tag="BPP1405" FT /product="conserved hypothetical protein" FT /note="Similar to Legionella pneumophila Mip SWALL:Q53427 FT (EMBL:S71704) (184 aa) fasta scores: E(): 1.7e-22, 44.57% FT id in 175 aa, and to Anabaena sp. hypothetical protein FT Alr7524 SWALL:Q8ZSI6 (EMBL:AP003602) (193 aa) fasta scores: FT E(): 6.8e-10, 30.06% id in 163 aa" FT /protein_id="CAE36707.1" FT /translation="MSRVLLIDPSQAGAERQAILAQIQGAFGATPNMFKAVANSAAALK FT SMWEAFGALGGGVIAARLGEQIAVAVANRNRCEYCLAAHTALGRKAGASAGDMAAAQDG FT RSADPRTAAALRFALQLVEARGQVGEAEVQAVRAAGFSDEEIVEILAHVALNLFTNYVN FT VAFAVPVDFPKVALRQAA" FT CDS 1506876..1507388 FT /transl_table=11 FT /locus_tag="BPP1406" FT /product="conserved hypothetical protein" FT /note="Similar to Corynebacterium glutamicum FT thiol-disulfide isomerase and thioredoxins cgl0914 FT SWALL:BAB98307 (EMBL:AP005276) (160 aa) fasta scores: E(): FT 1.4e-28, 50.64% id in 154 aa" FT /protein_id="CAE36708.1" FT /translation="MSRHEALATVTAPPLQVDAWLNTPHPLELARLRGQVVVLHAFQML FT CPGCLAHGLPQAERLHRLFRDDGVVVIGLHTVFEHHAVMGPEALRVFNHEYRWSFPIGI FT DRPDPEGDMPMTMRAYSLGGTPSLVLLDRRGRIRLHHLGRLDDLALGAAIGRLLAEDAE FT PAGAPPA" FT CDS 1507415..1507702 FT /transl_table=11 FT /locus_tag="BPP1407" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical 7.8 FT kDa protein Sc10f4.38C SWALL:Q9F3M3 (EMBL:AL450350) (69 aa) FT fasta scores: E(): 5.2e-13, 57.81% id in 64 aa, and to FT Streptomyces coelicolor hypothetical 9.9 kDa protein FT Scf43a.35C SWALL:Q9XA80 (EMBL:AL096837) (88 aa) fasta FT scores: E(): 0.00075, 29.07% id in 86 aa" FT /protein_id="CAE36709.1" FT /translation="MREARPRAGRAFATGGDGMTGKTAFRIGDHVAWNSEAGQVSGTII FT AIHTRDFDYKGHTHRASPDHPQYEIKSDKTDHIAAHRGEVLRRVRAKGGA" FT misc_feature 1507460..1507483 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1507493..1507579 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1507699..1508259 FT /transl_table=11 FT /locus_tag="BPP1408" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor conserved FT hypothetical protein Sc10f4.37C SWALL:Q9F3M4 FT (EMBL:AL450350) (178 aa) fasta scores: E(): 7e-24, 44.25% FT id in 174 aa, and to Aeropyrum pernix hypothetical protein FT Ape2246 SWALL:Q9Y9P2 (EMBL:AP000064) (188 aa) fasta scores: FT E(): 8.2e-19, 45.16% id in 155 aa" FT /protein_id="CAE36710.1" FT /translation="MRPPFHTIGHSNRSLEAFVALLEAAGIELVVDIRTVPRSRANPQF FT NQDALPGSLDGRGIAYEHLAALGGLRPRSRTVPREVNGYWDNDSFHNYADYALSQAFYA FT GLEHLVARGRAQRSAVMCSEAVWWRCHRRIVADHLLARGETVFHIMEAGRIDPASLTPG FT ALVRPDGMVVYPGADAAVRPPMP" FT CDS 1508337..1509383 FT /transl_table=11 FT /locus_tag="BPP1409" FT /product="conserved hypothetical protein" FT /note="Similar to Zymomonas mobilis hypothetical 36.5 kDa FT protein SWALL:Q9RH20 (EMBL:AF088897) (322 aa) fasta scores: FT E(): 2.1e-70, 57.84% id in 306 aa, and to Mycobacterium FT tuberculosis hypothetical protein Rv0799c or Mtcy07h7a.10 FT or Mtci429b.01 or Mt0820 SWALL:O07180 (EMBL:Z96797) (335 FT aa) fasta scores: E(): 6.9e-70, 56.56% id in 343 aa" FT /protein_id="CAE36711.1" FT /translation="MPQNNPEPQAVVSPITRSAIFLVATVGADNEAADKVRALCGKLAD FT LARAVGKRVPAGNLSCVCGFSAAGWDRLFGQPRPAELHPFREFSAGERRAPATPGDLLL FT HIRAEQMDLCFELATHVMAQLGDAVTVVDEVHGFRYFDLRSMVGFVDGTENPTGREALD FT FTLVDDADPDFAGGSYVLVQKYLHDMDGWNALSVETQERIIGRTKLSDIELDEAVKPSN FT SHSALTTLEENGQEIKILRDNMPFGRPGSGEFGTYFIGYARSPAPIEQMLENMVVGRPP FT GNYDRLLDFSRAVTGGLFFAPSADLLEALAERDPQDTDGSRLDPAPAARAPHDGSLNIG FT SLKGNPQQ" FT CDS 1509380..1510183 FT /transl_table=11 FT /gene="linM18" FT /locus_tag="BPP1410" FT /product="bacteriocin" FT /note="Similar to Brevibacterium linens bacteriocin linocin FT M18 LinM18 SWALL:Q45296 (EMBL:X93588) (266 aa) fasta FT scores: E(): 9.5e-54, 56.6% id in 265 aa, and to FT Mycobacterium tuberculosis 29 kDa antigen cfp29 FT SWALL:O07812 (EMBL:Y12820) (265 aa) fasta scores: E(): FT 2e-59, 62.5% id in 264 aa" FT /protein_id="CAE36712.1" FT /translation="MNNLYRDLAPISAAAWAQIEEEVARTFKRSVAGRRVVDVKDPGGF FT GLAAVGTGHLRGIAAPQKGVDAKLREVKALVELTVPFELQRDEIDAVERGANDADWQPA FT KDAATELAYAEDRAIFDGYKAAGIVGIREGSSNSRLELPTDAADYPAAVGRALEQLRLA FT GVDGPYSVLLGADAYTALSEGSDDGYPTIDHIKRIVSGDIIWAPALNGGCVLSTRGGDF FT ELHLGQDLSIGYQSHTDKVVRLYLRETLTFLMLTSEASVPVAPKG" FT CDS complement(1510238..1511536) FT /transl_table=11 FT /locus_tag="BPP1411" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens putative FT transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677) FT (416 aa) fasta scores: E(): 6e-53, 40.67% id in 418 aa, and FT to Rhizobium meliloti hypothetical protein Ra0081 or FT Sma0151 SWALL:Q930W3 (EMBL:AE007202) (866 aa) fasta scores: FT E(): 7.9e-52, 41.62% id in 382 aa" FT /protein_id="CAE36713.1" FT /translation="MDAVLILTVILGLFGLLLVLGIPIFAALGVPSILGIYLVGGASAL FT NVVPSVLHRGIASYSLICIPLFILMGETLARTSIGARLYTLFYTWLSRVRCSLAIASVG FT ASAIFGAMSGVSVAGAATIGRVAIPEMLKRRYDPGLAGGSVAAAGSLALLIPPSVGFVL FT YGEIASQSIGKLFSAAIVPGLLLSVLMMLYLYGLSRIKPSVAPDEAQKVSWRERWQALR FT DVWAAIVLIVAVLGTIYLGIATPTEASGLGAAGALLVALGYRELDRAKLREIVRSTIVT FT SSMILLIVAAALLFGHVLMRLQAPQMLIAWVAALAQPDWVILLLILVFLLIVGMFLDIV FT SIILITTPIVLPVITSLGLDPIWFGVVMIIMCEMAVITPPIGLNLYVIKGVAPEISLRD FT ITMGALPFVLVEALAVLILVLFPQLALWLPSHM" FT misc_feature complement(join(1510256..1510321,1510385..1510450, FT 1510511..1510576,1510640..1510705,1510799..1510864, FT 1510946..1511011,1511051..1511116,1511180..1511245, FT 1511306..1511371,1511393..1511443,1511456..1511521)) FT /note="11 probable transmembrane helices predicted for FT BPP1411 by TMHMM2.0 at aa 5-27, 31-48, 55-77, 97-119, FT 140-162, 175-197, 224-246, 277-299, 320-342, 362-384 and FT 405-427" FT misc_feature complement(1511450..1511536) FT /note="Signal peptide predicted for BPP1411 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.952) with cleavage site FT probability 0.644 between residues 29 and 30" FT CDS complement(1511540..1512061) FT /transl_table=11 FT /locus_tag="BPP1412" FT /product="putative membrane protein" FT /note="Similar to Klebsiella pneumoniae putative small FT integral C4-dicarboxylate membrane transport protein DctQ FT dctQ SWALL:Q9RN75 (EMBL:AF186091) (136 aa) fasta scores: FT E(): 1.3e-05, 26.89% id in 119 aa" FT /protein_id="CAE36714.1" FT /translation="MKSLLDRLTRIGHGTNRAAVFIAQAALLLMMLLTVYSVIARYVLQ FT QPSVHAVEISIYLLLLVTWLSVGWTHLLERHVSMEMLSIRVRGRGKRLLNVFRELVVLV FT FCGFLLHAGVQIAATALARNYRSTSLLAFPMWIAYGLIAVGALLLAIAAACKLNHPDGN FT AAIAPPSPEA" FT misc_feature complement(join(1511603..1511668,1511714..1511779, FT 1511843..1511899,1511945..1512001)) FT /note="4 probable transmembrane helices predicted for FT BPP1412 by TMHMM2.0 at aa 20-39, 54-73, 94-116 and 131-153" FT misc_feature complement(1511927..1512061) FT /note="Signal peptide predicted for BPP1412 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.714) with cleavage site FT probability 0.340 between residues 45 and 46" FT CDS complement(1512103..1513110) FT /transl_table=11 FT /locus_tag="BPP1413" FT /product="putative extracellular solute-binding protein" FT /note="Similar to Rhizobium meliloti putative periplasmic FT binding protein R01699 or smc00271 SWALL:Q92PN7 FT (EMBL:AL591788) (325 aa) fasta scores: E(): 1.4e-16, 29.2% FT id in 315 aa, and to Pasteurella multocida hypothetical FT protein Pm1252 SWALL:Q9CLH9 (EMBL:AE006164) (328 aa) fasta FT scores: E(): 4.7e-18, 28.66% id in 314 aa" FT /protein_id="CAE36715.1" FT /translation="MNKTWIAKLLPAVLLALSANAGAADKPIELTLSTYAPPSYEYMWK FT PLETFIAYVEKESQGRVKIKAFHSAQLFDGYEELPALSRGDIDITTVVSTYASGAMPVL FT NLFTMPFVFQDTAHLERAAKAGLLDVSIRGEMRDKYGIEVLGLAPIDPYQIYSRRAPVR FT TAADFKGKVWATTGAADARAIQLLGGSPTSMPSSELYLALDRGVVDGTPRPLITGLGRS FT LHEVVKHLSLATLAIDTSLLSMNKAKFDSLPPDIQDIIRRGAQVRDEEQFRQVYAYIEQ FT GVAKFEKNGVSVYTIEPAALQDMRAATQPAVQEWVAQEPAASRHLELLEKTRAN" FT misc_feature complement(1512154..1513017) FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 6.8e-49" FT misc_feature complement(1513042..1513110) FT /note="Signal peptide predicted for BPP1413 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.987 between residues 23 and 24" FT CDS complement(1513135..1513761) FT /transl_table=11 FT /locus_tag="BPP1414" FT /product="putative isochorismatase" FT /note="Similar to Escherichia coli isochorismatase EntB or FT EntG or B0595 or Z0737 or Ecs0634 SWALL:ENTB_ECOLI FT (SWALL:P15048) (285 aa) fasta scores: E(): 2.2e-06, 30.15% FT id in 189 aa, and to Arthrobacter sp N-carbamoylsarcosine FT amidase SWALL:CSH_ARTSP (SWALL:P32400) (264 aa) fasta FT scores: E(): 1.8e-12, 31.86% id in 204 aa" FT /protein_id="CAE36716.1" FT /translation="MLDLDNARGGFIGSHPFGRRPALVVIDFQRAFTDPDVSPLASDCA FT PAIAQANRLIQAMRGRGPVVFTVVGYDGNHGDGGCFHRKCPPLKDLVRGSAGCALDERL FT DYDAATDVLLHKTQASAFFGTPLAAMLAHAGCDAVLIAGCTTSGCVRASAVDAMQHGFP FT PFVAQDAVTDRSAAQHLSNLIDLKSKYAEVLPTDALLPLLLNPTA" FT misc_feature complement(1513159..1513707) FT /note="HMMPfam hit to PF00857, Isochorismatase family, FT score 4.1e-09" FT CDS complement(1514336..1515157) FT /transl_table=11 FT /locus_tag="BPP1415" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2117" FT /protein_id="CAE36717.1" FT /translation="MILGGAPGHEYDLHYIPAPLRRRHHSQAMSQAANPTALPAWDPPA FT ILAQLRANTCFGHMAEPTLAAFAAIAQWRRLDHGELLAGRGTPAPGVVIILKGAIHTSS FT FSDDGHEFALSMLEFDGLWGVAAVLDGGGMLRDSRAYQQTDILLLPRAAFLDILDGDPG FT LYRYFVKLLCSRIRTAHAIIDELALRSLPQRLPRLLGALTAGRPGDDERGIAVAQTQDA FT LATLLGVSRHAVNRELRQLANQGLVGLGYGEIWVRDLERLKQLWHERGAQP" FT misc_feature complement(1514669..1514950) FT /note="HMMPfam hit to PF00027, Cyclic nucleotide-binding FT domain, score 0.042" FT CDS 1515196..1516167 FT /transl_table=11 FT /locus_tag="BPP1416" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2116" FT /protein_id="CAE36718.1" FT /translation="MKIKSMLLAVLAVSMAGVSAAALSQGFPERALRVVVPYPPGGTTD FT VLVRLLQKPVADAAGQSVVVDNRPGGASVIGTSHVAQAAPDGYTVLGGDLSMLVNPSLM FT KDLPYDTLRDFRGVTMLARAPLVLLVHPSVPANTLDELIALAKARPGTLNFASGGYGTS FT THMAGEMFRRAAGIDVVHVPYQGVAPAMSALLGGQVQMYFGGTTTGLPHIQSGKLRALA FT VTGEAPSPLLPEVPTFVSRGIQGVNADTYWGVYAPARTPDAVIEKLNAYYTGALRDPAV FT QQRTRDLGLTLIGNSAAEHTAQMKTMIGDWGAFVKEADIRLE" FT misc_feature 1515196..1515267 FT /note="Signal peptide predicted for BPP1416 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.485 between residues 24 and 25" FT misc_feature 1515214..1515267 FT /note="1 probable transmembrane helix predicted for BPP1416 FT by TMHMM2.0 at aa 7-24" FT misc_feature 1515334..1516155 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 7.1e-93" FT CDS 1516171..1517025 FT /transl_table=11 FT /locus_tag="BPP1417" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2115" FT /protein_id="CAE36719.1" FT /translation="MAAKQSLVCLTFDFDAISVWLARGMDSPTPVSRGEFCAVAADRVL FT DLLERLGLPSTWFIPGHTLASYPEHCRRVHEAGHEIGHHGWTHVAPNLMTREEELDGLV FT RANEAIRALTGRAARGYRSPSWDLSPHTLALLLEHGFDYDSSMMGHDYLPYPVRQGDSF FT PLDEPAVFGAPTRLIEVPVSWSLDDYPHFEFVRAGQSVIPGLMNANSVMDNWIEDFLYL FT KENFDWGVITYTFHPFVIGRGHRMRMLERLLRRLIDEGATFVRMEEAVDAYRQRQALAA FT GAA" FT misc_feature 1516249..1516704 FT /note="HMMPfam hit to PF01522, Polysaccharide deacetylase, FT score 2.1e-11" FT CDS 1517044..1517862 FT /transl_table=11 FT /locus_tag="BPP1418" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2114" FT /protein_id="CAE36720.1" FT /translation="MMQHYYERDGVRLSYYLDDYTDPWTQAPTLLLLHGAMANAQRFYS FT WVPGLSRDYRVVRADLRGHGLSDVPPADKPLDLQVLTEDILALLDHLGCERVHLAGNSA FT GGYVGQHLAMQHLQRIETLALFGSAPGLRNSQASTWLERVAEKGLRQFLADTIDDRFPP FT ELVGTPRCEQFLDALSDHDMAYIGRFVGYMAQQEWGDQLHRITCPTLVVIPGAGRIGAM FT DAYQPMRDHLKRAEILVYEGERHSICEYLPQRCVADLRSFLARHGGPAWP" FT misc_feature 1517203..1517832 FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 1.5e-16" FT CDS 1517882..1519342 FT /transl_table=11 FT /locus_tag="BPP1419" FT /product="putative amidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2113" FT /protein_id="CAE36721.1" FT /translation="MASVMNIEQYVQQDGLALSAQLRAGATDPQALMQCAITLARQRAE FT PLNALCYPDYDAALARAAAWRPTGVFGGLPFLLKDSGLACDRLPSSIGLALCKDMRFAA FT NATLVERFDAAGLLPFARTTVPALCMVPTTEALVNGGPARNPWAPQRSAGGSSGGAAIA FT VATGVVPLAHGSDGGGSIRIPASCCGVFGLKPSRGLVPLGPARGEAWGGMAGDGVLSRS FT VRDTAAALDAIAGMERGAPYAAPAPPAGGYLAALARPFERPLRIGVWQHAWDGIEVDPA FT CSATLAQAEALCRQLGHATEAIAAPPIDYQAFVRAHIGILCTHIALAVDARLAVLRRGL FT RDDDLEPAILDGYRRARGISATDYAGMIQALHAVGRAMAACMQGYDLLLSPTLTRPPVP FT LGEISMADDFVSFRQKAARYTTFLAVINASGQPAASVPLHIDGQGLPIGVQLIGALGRD FT DLVLRLAAQLERAAPWAGRFPPAAGAGA" FT misc_feature 1517987..1519267 FT /note="HMMPfam hit to PF01425, Amidase, score 1.1e-67" FT CDS 1519345..1520133 FT /transl_table=11 FT /locus_tag="BPP1420" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2112" FT /protein_id="CAE36722.1" FT /translation="MAGRTDCAPAAGRLAGRVALITGAAGGIGSAAALRFAAEGAALAL FT LDRRPDAIEQLAGRICGQGGQAIGVAADVTDDDSVRQAVRRAVEHFGRIDTLFNCAGGS FT VAGDTAVDKVDLALWNRTLRLDLDSTMLCCRHAVPAIVRAGGGAVVNMSSGAGLRGSFG FT GHAYTAAKGAVIALTRALAAEYAPHGVRVNAICAGRIRTERILRNLDAGAPAQAGAAQR FT YPCREGDPIDIAHIALFLASHESRMITGEAIAANGGYSAF" FT misc_feature 1519387..1520121 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 3.8e-72" FT misc_feature 1519804..1519890 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT tRNA complement(1520256..1520331) FT /note="tRNA Ala anticodon CGC, Cove score 84.28" FT CDS complement(1520419..1521924) FT /transl_table=11 FT /locus_tag="BPP1421" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2111" FT /protein_id="CAE36723.1" FT /translation="MHILVAGFQHETNTFAPSKAGYDNFLRGEGFPALVRGDDLLALRA FT VNIPAGGFLNAALADGHSVHPVLWAGASPSAHVTRDAFERIAGEIEAAARAGRYDAVYL FT DLHGAMVTEHHDDGEGELLRRLRDAVGPATPIVASLDLHANVTRAMLAHASALVAYHTY FT PHVDMADTGARAAALLQARAQAGKHWHGAARRLPFLIPINGMCTQLEPARGVYALLAEL FT ERSEPGIASLSCALGFPAADFPECGPVVWAHGPDRDAVERAVQTLADRIAGLEAQWAPD FT FLAPDEAIRQARQLAQGARRPVVIADTQDNPGAGGDANTTGMLRALIDADADNAAIGLM FT CDPQAVAQALAAGVGKCVRLRLGGQSGVAGDAPCEAEFIVEHQSDGKTRYDGPMMHGMA FT ADLGPTVCLRHRGVRVIVSSNKSQTLDRNLIRLGGIDPEDLAILVVKSSVHFRADFEPI FT AHAVLIAKAPGPMQADPADLPWTRLAPGMRTRPRGRPFVPARP" FT CDS complement(1521966..1522748) FT /transl_table=11 FT /locus_tag="BPP1422" FT /product="putative exodeoxyribonuclease III" FT /EC_number="3.1.11.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP2110" FT /protein_id="CAE36724.1" FT /translation="MKLATWNVNSLNVRLPQVLDWLAANPVDALCIQELKLTDDKFPLD FT AFTEAGYHAAWAGQKTYNGVAIISREPGFALVRNNPRYEDPQQRILAVTLPSPAGDVRV FT ICAYCPNGQSVDSDKYVYKLAWFDGLRDWLEEEMRTYPRLAILGDYNVAPADADVHNPE FT KWEGQVLVSEPERAAFRALLDLGLTDSFRLFEQPEKSFSWWDYRQFAFRRNAGLRIDHV FT LLSDALKPHCVACVIDKAPRANEQPSDHAPVIATLAFG" FT misc_feature complement(1521978..1522748) FT /note="HMMPfam hit to PF03372, FT Endonuclease/Exonuclease/phosphatase family, score 1.8e-41" FT misc_feature complement(1522074..1522109) FT /note="PS00728 AP endonucleases family 1 signature 3." FT CDS complement(1522818..1523264) FT /transl_table=11 FT /locus_tag="BPP1423" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2109" FT /protein_id="CAE36725.1" FT /translation="MTYPILLALHLLAAFVFIGTVFFEVLILESVRRQVPREAMNAVER FT GIGNRARAIMPWVLLALFGAGIGMAWQHRGALEQPLASSFGLLLSLKIVLALSVLGHFA FT AAMRWRRRGQLRGRRSRRLHLSVFCHLVAIVLLAKGMYYIDALR" FT misc_feature complement(join(1522830..1522895,1522956..1523021, FT 1523052..1523117,1523181..1523246)) FT /note="4 probable transmembrane helices predicted for FT BPP1423 by TMHMM2.0 at aa 6-28, 49-71, 81-103 and 123-145" FT CDS complement(1523261..1524487) FT /transl_table=11 FT /locus_tag="BPP1424" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2108" FT /protein_id="CAE36726.1" FT /translation="MAELLQIDEPAAGRAAPQWRAFLELGFRPLYLVGAAWGALSVALW FT IGAPQWLGGAMAGVIWHAHEMLWGFIGAIAVGFLLTAAATWTGVNPLRGAPLAALAALW FT LAARAAFLLPGMAAFWTGVACELLFFAWAAAALGRAIYRRGASRRNDGVPLLVLGLGAA FT DALYLLAARAGDYPLLLQRFNAGLLCMAVIALLIARRIIPFFAMRAIAGLQIPMHTRSG FT QWQLAAGLVAVAATLAQAGALTAVALAAAGLIALAQWLSWRPWATRGVPLLWILYTGYL FT GLAAGLLVAAASAAGGIARAAWPAHVIGMAGFGLLIIGMITRTALGHLGRPLRTDRLML FT ACYLLVIGAAALRLAALWPGPHTLAALHGATAAWVLAFVLYLWRFAPLLVRPRLRAPTA FT AAMPVRSRP" FT misc_feature complement(join(1523330..1523395,1523417..1523473, FT 1523519..1523584,1523606..1523671,1523717..1523809, FT 1523870..1523935,1523966..1524031,1524095..1524160, FT 1524221..1524286,1524326..1524391)) FT /note="10 probable transmembrane helices predicted for FT BPP1424 by TMHMM2.0 at aa 32-54, 67-89, 109-131, 152-174, FT 184-206, 226-257, 272-294, 301-323, 338-357 and 364-386" FT CDS complement(1524480..1524884) FT /transl_table=11 FT /locus_tag="BPP1425" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2107" FT /protein_id="CAE36727.1" FT /translation="MGAPDLCTEEDITQLVHQFYAEVRRDAELGPIFNTHVDDWDVHLA FT KLVDFWSSILRGTGRFRGTPMPRHVALPGLHAGLFERWLRLFRATAAAQPNQAMAEQAC FT LMAGRIAQSLWYGYQLHRSPDQAPTDLAHG" FT CDS 1525044..1525346 FT /transl_table=11 FT /locus_tag="BPP1426" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2106" FT /protein_id="CAE36728.1" FT /translation="MITPPDHPPRIAIQYCTQCQWLLRAAWMAQELLSTFGADLGEVAL FT VPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLKQRVRDHLDPGRPLGHIDGRPKP" FT CDS complement(1525343..1526113) FT /transl_table=11 FT /locus_tag="BPP1427" FT /product="putative amino-acid ABC transporter, ATP-binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1362" FT /protein_id="CAE36729.1" FT /translation="MIGLQGIDKSFGGNRVLHGVDVVIPEGSVTALIGPSGSGKSTLLR FT CVNLLEIPEAGVLRLGPETLAFDGRRPARDAVQRIRRQTGMVFQNFQLFPHQSVIDNVM FT EGLVTVQRWDKPRARARAMELLEKVGMTAKADAWPVTLSGGQQQRVAIARALASSPRVL FT LCDEPTSALDPSLAIEVVDVLRRLAGEGMTMLMATHDLRLAASIAQQVVFLEGGAVVEA FT GTPREVFAQSRDARTAAFVSTLTQGLPEEWSAPA" FT misc_feature complement(1525463..1526035) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 6.6e-64" FT misc_feature complement(1525646..1525690) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(1525991..1526014) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1526110..1526790) FT /transl_table=11 FT /locus_tag="BPP1428" FT /product="putative amino-acid ABC transporter, permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1363" FT /protein_id="CAE36730.1" FT /translation="MPAWLQLMLDSFWPLLHAGLMFTVPLTLLSFAAGLALAFVVALLR FT LFGPWPIVALMRFYVWLIRGTPLLVQLFVIFYGLPSVGIVLDPLPAALIGFTLNVGAYN FT SEVIRGAIESIPRGQWEAAYSLSMTRGQAMRRTVLPQAARVAVPPLANSFIALVKDTSL FT AAVLTVPEIFQAAQRIAAVTYEPLILYTEAALIYLVFSSALSSLQVHLEKRFGQHAVFA FT EQHR" FT misc_feature complement(1526248..1526460) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.3e-17" FT misc_feature complement(join(1526554..1526619,1526659..1526724)) FT /note="2 probable transmembrane helices predicted for FT BPP1428 by TMHMM2.0 at aa 22-44 and 57-79" FT misc_feature complement(1526677..1526790) FT /note="Signal peptide predicted for BPP1428 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.635) with cleavage site FT probability 0.379 between residues 38 and 39" FT CDS complement(1526857..1527645) FT /transl_table=11 FT /locus_tag="BPP1429" FT /product="putative amino-acid ABC transporter, periplasmic FT amino acid-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1364" FT /protein_id="CAE36731.1" FT /translation="MNFSLRKLLLAGLVPLAMVGTAAQADDLAAIKAAGVIKIGTEGTY FT APFSYHDASNKLTGFDVEIGRAIAQKLGVKAEFVEGKWDGLIAGLDVKRYDAVINQVGI FT TDARKAKYDFSDPYISSQAALIVREDNQAIKSFADLKGRKSANTLTSNFGKLAQSYGAE FT VVPVQGFNEAIDLLMSGRVEATVNDNLSFLDFKKQKPNAKVKVAAYDKSKEFSESGVLI FT RKNNPELQAAINKALAELKADGTYRKISEQYFGADLSAAQ" FT misc_feature complement(1526878..1527537) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 1.9e-82" FT misc_feature complement(1527430..1527471) FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT misc_feature complement(1527571..1527645) FT /note="Signal peptide predicted for BPP1429 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.981 between residues 25 and 26" FT CDS complement(1527888..1530212) FT /transl_table=11 FT /locus_tag="BPP1430" FT /product="putative membrane transport ATPase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2722" FT /protein_id="CAE36732.1" FT /translation="MPSTTRDLALDTPSGQRTDAHGHDHAGHDHAGHDHAHDHGIPACC FT GHGHGQPAAPAAAPAWQPGPGQQVTRVRIGQMDCPTEETLIRKKLASLPEVHELDFNLM FT QRVLTVLHADGALDRIDAAIRSLGMTPEPLAGDAPATPAGAAAPSRGWRLLAAGGVLAA FT LSELAHFTGQPVYVAAALALAAILACGLSTYRKGWIAVRNGNLNINALMSIAVTGAMLI FT GQWPEAAMVMFLFNVAELIEARALDRARHAVRGLLDLAPQTATARQPDGSWAEVPAARL FT RPGDLVRVRPGERIAADGTISEGHSAIDQSPITGESLPVEKGPDDDVYAGTVNASGSFD FT YRVTAAAGNTTLDRIIHAVEQAQGARAPTQRFIDRFSRIYTPAVVGLAVLVALAPPPLL FT LGHAWLDSVYRALALLIIACPCALVISTPVSVVSGLTAAARRGILIKGGVYLEEGRKLR FT WLALDKTGTLTQGKPVQTDLELLHDASAGGRPALRAAVSLAARSDHPVSRALAQADHAL FT DAPLDEVNGFAALPGRGVQGEIGGERFQLGNRRLMRELGVSTPDIEARIDAYEAAGKTA FT IALADGQRVLLLAAVADTLKASSAAAVADLHRLGVRTLMLTGDNTRAAQAVAAQAGIDE FT ARGDLLPQDKLDAVEAKLDPALRVGMVGDGINDAPALARADIGFAMGAAGTGTAIETAD FT VALMDDDLRKIGTFVRLSRATHRILTQNIVLALGIKAVFLVLAMAGQATLWMAVFADVG FT ASLLVVANGLRLLRAGRHQAS" FT misc_feature complement(join(1527915..1527980,1527993..1528058, FT 1528914..1528979,1529010..1529075,1529637..1529702)) FT /note="5 probable transmembrane helices predicted for FT BPP1430 by TMHMM2.0 at aa 170-192, 379-401, 411-433, FT 718-740 and 744-766" FT misc_feature complement(1528158..1528844) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase, score 8.7e-27" FT misc_feature complement(1528161..1528229) FT /note="PS01229 Hypothetical cof family signature 2." FT misc_feature complement(1528488..1528511) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1528806..1528826) FT /note="PS00154 E1-E2 ATPases phosphorylation site." FT misc_feature complement(1528854..1529525) FT /note="HMMPfam hit to PF00122, E1-E2 ATPase, score 3.1e-96" FT CDS 1530295..1530729 FT /transl_table=11 FT /locus_tag="BPP1431" FT /product="putative MerR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2723" FT /protein_id="CAE36733.1" FT /translation="MKIGELARTAGTTVETVRYYEKEGLLPAPERGLNNYRSYGEAHVE FT RLRLIRNCRALDMTQDEIRTVLALADNHEAGCAPINQVFDEHIAHVDARIAELTQLKAQ FT LGELRQRCASARPDAEDCGILHGLSEMQVEERPERHTHLG" FT misc_feature 1530304..1530411 FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT proteins, merR family, score 1.8e-11" FT CDS 1530832..1531416 FT /transl_table=11 FT /locus_tag="BPP1432" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2703" FT /protein_id="CAE36734.1" FT /translation="MTVSPLHALTSRRSMKFLRAPAPKQDELEQILQAAMSAPDHGALR FT PWRFVLIRGEAIGRLADLAIEAVKRSGDKRMTPEKEKSVREWAAGVPLFIAVAQKISHD FT NTRIPEQEQLLATGAAVMNILNAAHMLGYGAFWSTGLGTYVEDVQDALGLDAMDYRFLG FT FVALGTPGCAVPPAQRPDFREFVSEWQGVTV" FT misc_feature 1530841..1531290 FT /note="HMMPfam hit to PF00881, Nitroreductase family, score FT 3.7e-14" FT CDS complement(1531486..1532994) FT /transl_table=11 FT /gene="argH" FT /locus_tag="BPP1433" FT /product="argininosuccinate lyase" FT /EC_number="4.3.2.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2702" FT /protein_id="CAE36735.1" FT /translation="MVQIIRQVGRRAVPWRRRGARRPYIIARIMANTSHSSQDQFANKA FT QAWSARFSEPVSDLVKRYTASVDFDKRMARHDIRGSLAHADMLAAQGIISAQDLADIQR FT GMQQILSEIDAGSFQWLLDLEDVHLNIEKRLVELVGDAGKRLHTGRSRNDQVATDIRLW FT LRDEIDTLVDLLRQLRHALATVALENAATIMPGFTHLQVAQPVTFGHHLLAYAEMFGRD FT AERLADCRRRVNRLPLGAAALAGTSYPIDRERVARTLGFDGVCRNSLDAVSDRDFGIEF FT CAAGALIMTHISRLSEELVLWMSPRVGFIDLADRFCTGSSIMPQKKNPDVPELARGKTG FT RVNGHLVALLTLMKGQPLAYNKDNQEDKEGLFDTADTLRDTLTIFADMAGGIKVKADNM FT RAAALQGFATATDLADYLVKRGLPFRDAHEIVAHAVRDCEQRGCDLADLSLADLQAYHP FT SIGEDIHQVLTLEGSVAARKHIGGTAPERVREEAQRVLAETAGA" FT misc_feature complement(1531570..1532847) FT /note="HMMPfam hit to PF00206, Lyase, score 5.1e-112" FT misc_feature complement(1532011..1532040) FT /note="PS00163 Fumarate lyases signature." FT CDS 1533015..1534361 FT /transl_table=11 FT /locus_tag="BPP1434" FT /product="putative membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2701" FT /protein_id="CAE36736.1" FT /translation="MLPKELENVVATLDNYVPDTAWGQTLVGIGVLVLTALFVQWVVAR FT VVLYFAHRLLVLSGREDWDRALSRRRAYQNFWYAVPFAVVSMGIELVPHAERAVTVVGR FT LSHAGAWICVFVAFSGVLSAWQDTYSATTRAQTRSIKGYIQIGKLILCAVGAVLVLSIL FT LDRSPLWMISGLGALSAVLLLVFKDTLLSLVASTQLTSNDMLRIGDWIEMPQANADGFV FT KDIALHTVKVQNWDNTVTTVPTYKLFSESYRNYRHMFESGGRRIKRTLRLDAASVRFMN FT EEEGGRLKRFVLLRDYLQAKEDALLEANRQLGELAEVPANRRRLTNIGTFRGYALAYLR FT QHPEVRQDMAMMVRMMEPQPNGIPIEIYCFTAITAWVEYERIQGDIFDHLLAILPELGL FT RLFQEPSGSDLGNLAGGMREAALHEFRREQVAAGEAPLALRGDGAAPVR" FT misc_feature join(1533072..1533140,1533240..1533293,1533336..1533389, FT 1533438..1533506,1533519..1533572) FT /note="5 probable transmembrane helices predicted for FT BPP1434 by TMHMM2.0 at aa 20-42, 76-93, 108-125, 142-164 FT and 169-186" FT misc_feature 1533447..1534220 FT /note="HMMPfam hit to PF00924, Mechanosensitive ion FT channel, score 4.6e-25" FT CDS 1534400..1536034 FT /transl_table=11 FT /locus_tag="BPP1435" FT /product="putative NAD synthetase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2700" FT /protein_id="CAE36737.1" FT /translation="MSLARVGIAQINACVGDLAGNAARVLQAARQAAGQGADVLVTPEL FT VLTGYPPEDLLLRPRFIQEQQAVFERLCQDLAGLAGLHVVIGHVLARQDRLYNAATVVC FT EGRVLGSYCKRELPNYSVFDEQRYFSAHGEAFGFTVKGVRFGLNICEDIWLERAPRAAA FT ADGAQVLLVSNASPYNTGKQEERLSVARRSVQDTGCALIYANLVGGQDELVFDGASFAL FT DAQGRMSARLPDFTEGVNVLEVDARGTVRPVTEQAAVQPYGLEEQVWNALVLGVRDYLG FT KNGFPGAIIGLSGGIDSAVVLAVAVDAVGADNVRAVMMPSRYTADISLTDAADMARRLG FT VQYDVIAIGEVVDRFEAALAPQFAGLPVDATEENIQARARGTLLMALSNKTGRLVLTTG FT NKSEMTTGYCTLYGDMAGGFAVIKDVPKTLVYRLANWRNQRQPIIPERIITRPPSAELR FT PDQTDQDSLPPYDILDGIIERYMEHNASAADIVAAGFPREAVGQVVRLIRINEYKRRQA FT PPGPRITPRAFGRDWRYPVTNGFRETV" FT misc_feature 1534406..1535185 FT /note="HMMPfam hit to PF00795, Carbon-nitrogen hydrolase, FT score 5.2e-11" FT misc_feature 1535354..1535965 FT /note="HMMPfam hit to PF02540, NAD synthase, score 2e-76" FT CDS 1536078..1536416 FT /transl_table=11 FT /gene="glnB" FT /locus_tag="BPP1436" FT /product="nitrogen regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2699" FT /protein_id="CAE36738.1" FT /translation="MKQVTAIIKPFKLDEVREALAEVGVSGLTVTEVKGFGRQKGHTEL FT YRGAEYVVDFLPKIRVEVVLADDMVDPAIEAIVKAARTGKIGDGKIFVTPVEQAIRIRT FT GESDEEAL" FT misc_feature 1536081..1536410 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00543, Nitrogen regulatory protein FT P-II, score 6.8e-58" FT misc_feature 1536213..1536230 FT /note="PS00496 P-II protein urydylation site." FT misc_feature 1536324..1536365 FT /note="PS00638 P-II protein C-terminal region signature." FT CDS complement(1536441..1536815) FT /transl_table=11 FT /locus_tag="BPP1437" FT /product="endonuclease" FT /note="ortholog of Bordetella pertussis (BX470248) BP2698" FT /protein_id="CAE36739.1" FT /translation="MTRINCVPVEELSGPHLVAEYRELPRVFALAHKAAARGALVQPAA FT YTLGKGHLLFFYTRLGYLARRHRALVEEMRRRGYRPAFAGVTREDFADIPAPFWNDWTP FT TEEALALNRARIAARGGGKA" FT misc_feature complement(1536447..1536815) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03013, Pyrimidine dimer DNA FT glycosylase, score 2.1e-22" FT CDS 1536901..1537281 FT /transl_table=11 FT /locus_tag="BPP1438" FT /product="putative heat shock protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2697" FT /protein_id="CAE36740.1" FT /translation="MDKIRLDKWLWAARFYKTRSLAVQEIGKGRVQVNGQPAKPAREVA FT PGDVVCIRKEDPPIHVRVCAVSGVRGPAPVARQLYEETPESAAARERAAEMRRLAPEPA FT MDIVAGRPTKRDRRLIDKWRDA" FT misc_feature 1536910..1537050 FT /note="HMMPfam hit to PF01479, S4 domain, score 8e-13" FT CDS 1537399..1539336 FT /transl_table=11 FT /locus_tag="BPP1439" FT /product="putative phosphatase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2696" FT /protein_id="CAE36741.1" FT /translation="MHEPTMSKRRLVLKMLGGAPMLPLGAVGAATLLAGCRAGADGAQA FT AARGAGPRGDFVTAAFTSMAAPSLDAPEKMAITTVESTLEVSFSDGGRQTFQLGYEPFF FT MTGDSVPDGQGATRVAGGYLDIHGRPIMDSSVPGKARQFFSDCPDGMSLLALPSARVPG FT VKGNTVFAVVQFEYASHNQKGESMYGLLPSPIAVLTLAQDPATGRLALVKYSPVDTAPA FT HGLWITCGASLSPWNTHLASEEYEPDATTARASAQFQGFSRNLYGDAAKANPYHYGHLP FT EVVVHPDGTGTIRKHYCLGRISHELIQVMPDQRTCLMGDDATNGGLFMFVADRKADLSA FT GTLYVAKWRQTSGEGPGAGTLGWINLGHARSADIEALADTLTAADIMDVRTADPGDPAF FT KAIRVNGKANWVRLAPGREQAAAFLETHCYAALAGGTMAFSKMEGTTVNARDRIAYSAM FT SRIETSMVDGTSPDLRVQGPEPGAVYALNLRGGQRDSAGTAIDSEWVPVDMAAVPALVG FT EKLAAPDALGNRHHADRISNPDNIKFSEKLRTLFIGEDSNGHVNNFLWAYNVDSGALSR FT ILSCPAGGESTGLQAVDEINGWTYITSNFQHAADWGGVHAVVRATLDPLVKANYRDGFG FT ASVGYITITP" FT misc_feature 1537399..1537485 FT /note="Signal peptide predicted for BPP1439 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.972) with cleavage site FT probability 0.408 between residues 29 and 30" FT misc_feature 1537432..1537500 FT /note="1 probable transmembrane helix predicted for BPP1439 FT by TMHMM2.0 at aa 12-34" FT CDS complement(1539430..1539975) FT /transl_table=11 FT /locus_tag="BPP1440" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2695" FT /protein_id="CAE36742.1" FT /translation="MLPIVIVSGPPGSGKTTACGLLAQADPQGLHLPSDLFYGFPAHPI FT PPYRPQADAQNAAVIRAVCRSAASFAADGYRVYLDGIFGPWFLPLIAAQLQAARCPAAY FT ALLDIGLDEALARVEQRSGPGQASMVRTMHDAFRAAGSLAGHRVVTAGRPAAEIADEIA FT GRLQAGALALDLARWAPG" FT misc_feature complement(1539928..1539951) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1540050..1540931) FT /transl_table=11 FT /locus_tag="BPP1441" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2694" FT /protein_id="CAE36743.1" FT /translation="MSSIRFLRTFLAVAQHGTFSEAAEQVALTQAAVSFQMRALEAELG FT RELFDRGGRLAILNAAGRELVPEIKRLLDLYDHLKAPRNVPGELAGSVSVGAIVSCMGT FT LSKVVSQLKRDHPALDVRVFSGKASELAGKVEAGELDAALVVEAGRKMASTRWTPLYEE FT PLVVLAHPHAPGADAREVLAANPFLRFDRTQRTGRQIDRIVRRLGGGLNEFLELNAIET FT LVELVRQEVGVTLLPLLNGANWQASPQLRVLPLPAELGPAVRAIGMIERRDHARLAVTA FT EICAQCGALFGR" FT misc_feature complement(1540056..1540676) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 8.5e-29" FT misc_feature complement(1540743..1540922) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 5.8e-20" FT misc_feature complement(1540788..1540880) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1540866..1540931) FT /note="Signal peptide predicted for BPP1441 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.716) with cleavage site FT probability 0.571 between residues 22 and 23" FT CDS 1541039..1542667 FT /transl_table=11 FT /locus_tag="BPP1442" FT /product="putative gamma-glutamyltranspeptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2693" FT /protein_id="CAE36744.1" FT /translation="MKAFNWVNPYPSTRIPVFARNVVSTSHPLAAQAGLRMLLKGGNAV FT DAAIAAAATIVLVEPVSCGLGGDCFAIVWDGRQLHGLNSSGVAPAAWNVEYFKRKYGTG FT PDGLAVQPKRGWDAVTVPGVVAGWAALHEKLGKLPFEQLFEPAIEIAERGYTVPPVVAH FT KWAAAAAELSEQPGYAQAFMPEGRAPRVGEHFRFPDAAYALRRIAASGGRDFYEGELAE FT RIAAFSKECGGAMTLDDLRNYRPEWVKPISRSYRGYELHEIPPNGQGIAALIALGICER FT FDLADMPVDSVQSQHLQIEAMKLAFSDLYRYVADPRSMEVTPQQMLDDAYLDSRARLID FT PDRATHFEAGRPHAGGTIYLTAADENGMMISFIQSNYMGFGSGVVVPGTGISLQNRGVG FT FSMNPASANVVEGGKRPFHTIIPGFLTRGGKPVMSFGVMGGDMQPQGHLQTVIRMLDYH FT QQPQAACCAPRWKVNRDFTLDIESTMNRATVEGLRNLGHRLKAVDDPYMDFGAGQFIWR FT MAESDNDLGYVAASDSRRDGQAVGF" FT misc_feature 1541141..1542652 FT /note="HMMPfam hit to PF01019, FT Gamma-glutamyltranspeptidase, score 1.2e-170" FT misc_feature 1541222..1541266 FT /note="PS00678 Trp-Asp (WD) repeats signature." FT CDS 1542709..1544226 FT /transl_table=11 FT /locus_tag="BPP1443" FT /product="ABC-transport protein, solute-binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2692" FT /protein_id="CAE36745.1" FT /translation="MTKTKSLSMMMGAAVLAGAGGAALAQDLRIGLQEDPDVLDPHRAR FT TYVGRSLNVSVLLSSLKLHDCASCGTNCSFSSMSTSLSHNEVKTMRTDVQFHDGSKFDA FT AAARANLERAMTLQDSMRKGELASVEKIEAPDPATLVLTLKRPDATLLAQLSDRAGMML FT SPKAFEGDAAAVGRKPVCSGPYKFVERVQNDRIVLQKFDQYYGAKDYHFDKLVFLPIPD FT TTVRLSNLRAGGLDILERMNPSDAPQVKNDASVQFMPVSGLGYQEVFFNTGNGKRAETN FT PFKDKRVRQALALSIDRAIINEVVGGGIFDPASQPFPPASPYHSDKFPVPKRDVERARA FT LLKQAGLQKVKAEFAFGNNTTTSAIAEMIQAMAAEAGFELSLRPTEYAAMLNEAQAGNF FT EMIMRGWSGRVDPDGNIYQFVTCKGALNDGRYCNAEVDKLLAEARTVPDQAKRKAIYDQ FT AQALLQADTHDIYLYYQPWPFVLGKNVRGFKPYPDGMVRLKGVTLAK" FT misc_feature 1542709..1542783 FT /note="Signal peptide predicted for BPP1443 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 25 and 26" FT misc_feature 1542709..1544217 FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5, score 1.5e-31" FT CDS 1544302..1545246 FT /transl_table=11 FT /locus_tag="BPP1444" FT /product="ABC-transport protein, inner membrane component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2691" FT /protein_id="CAE36746.1" FT /translation="MFKLILRRVVVAIPTLILVSMIVFMLQKILPGDPVLTLAGEERDP FT AVLDYLREKYRLNDPLPVQYGAWVAQVLQGDLGKSMRTDVPVLTLIAQKLPVTLQLAVM FT AMAFALLVGIPLGIVAAVRKGTAVEMGANMAALSGMSIPNFWLGIILIMVVSVQWKLLP FT ASGYVSPAEDFWLSIKTMLMPALALSTAIAAYLMRHTRSAMLEALSADYVRTARAKGVA FT PRKVVLRHALRNALMPIVTLVTLLFGELLAGAVLTEQVFTIPGFGKLIVDAVFNRDYAV FT VQGVVLCVAVGFIVMNLLADILYILVNPRLRHA" FT misc_feature 1544302..1544376 FT /note="Signal peptide predicted for BPP1444 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.821) with cleavage site FT probability 0.559 between residues 25 and 26" FT misc_feature join(1544314..1544382,1544599..1544667,1544725..1544778, FT 1544821..1544889,1545001..1545069,1545154..1545222) FT /note="6 probable transmembrane helices predicted for FT BPP1444 by TMHMM2.0 at aa 5-27, 100-122, 142-159, 174-196, FT 234-256 and 285-307" FT misc_feature 1544911..1545126 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 3.8e-07" FT misc_feature 1544914..1545000 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1545243..1546118 FT /transl_table=11 FT /locus_tag="BPP1445" FT /product="probable ABC-transport protein, inner membrane FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2690" FT /protein_id="CAE36747.1" FT /translation="MSAPIASAGMAAPRRANRSWGKFRRNRIAMLGALIVLAFVVLALL FT APWVASHDPFQTSFMTIRKAPSAAFWMGTDELGRDIFSRMVYGARASLMAGMVSVLIAL FT AVGVPFGLAAGYFGGWTDSVISRATEALLAIPFLILAIALAAFLGPSLTNAMIAIGVSA FT APKFIRLTRGQVLAVKNEDYVQSARALGASDLRIIGRHVFPNVMPPLIVQATITIATAI FT IAEASLSFLGLGLQPPNPSWGSMLNTAKNFMTQAPWMSIFPGSAIFLVVLGFNLLGDGL FT RDALDPRQEK" FT misc_feature 1545243..1545371 FT /note="Signal peptide predicted for BPP1445 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.988) with cleavage site FT probability 0.824 between residues 43 and 44" FT misc_feature join(1545324..1545392,1545528..1545596,1545633..1545701, FT 1545879..1545947,1546008..1546076) FT /note="5 probable transmembrane helices predicted for FT BPP1445 by TMHMM2.0 at aa 28-50, 96-118, 131-153, 213-235 FT and 256-278" FT misc_feature 1545483..1545569 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature 1545765..1545995 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 1.3e-10" FT misc_feature 1545768..1545854 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS join(1546121..1547548,1547547..1547978) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1446" FT /product="probable ATP-binding ABC transporter protein FT (Pseudogene)" FT /note="Similar to Ralstonia solanacearum probable FT ATP-binding ABC transporter protein Rsc1379 or Rs04662 FT SWALL:Q8XZL6 (EMBL:AL646064) (627 aa) fasta scores: E(): FT 3.8e-154, 73.13% id in 618 aa, and to Salmonella FT typhimurium putative ATPase components of ABC-type FT transport system, contain duplicated atpase domain ylia or FT stm0848 SWALL:Q8ZQM4 (EMBL:AE008735) (623 aa) fasta scores: FT E(): 9.2e-135, 65.03% id in 612 aa" FT /db_xref="PSEUDO:CAE36748.1" FT misc_feature 1546226..1546837 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 6.3e-56" FT misc_feature 1546247..1546270 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1546607..1546651 FT /note="PS00211 ABC transporters family signature." FT misc_feature join(1547165..1547548,1547547..1547735) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.4e-58" FT misc_feature 1547186..1547209 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature join(1547507..1547548,1547547..1547549) FT /note="PS00211 ABC transporters family signature." FT CDS complement(1547981..1548625) FT /transl_table=11 FT /locus_tag="BPP1447" FT /product="LysE-family efflux protein" FT /note="Similar to Caulobacter crescentus efflux protein, FT LysE family Cc0456 SWALL:Q9AAY6 (EMBL:AE005719) (208 aa) FT fasta scores: E(): 6.7e-38, 56.54% id in 214 aa, and to FT Zymomonas mobilis hypothetical 17.5 kDa protein Zm10orf7 FT SWALL:Q9XBR8 (EMBL:AF157493) (158 aa) fasta scores: E(): FT 1.1e-22, 49.06% id in 161 aa" FT /protein_id="CAE36749.1" FT /translation="MTPLAALLAFTVAATLLTITPGLDTALVLRTAAIDGPRRALLAGL FT GVCAGCLAWGVAAALGLGALLAASSLAYDALRIAGAIYLCWLGARLLARSLRRRAGDAA FT PGMLPAAPAGGGALQWFWRGCLTNMLNPKVGVFYVTFLPQFIPAGVDVLAFSLLLAALH FT AALGLLWFAALVAATRPLSRWLARPSVARGLDRLSAGVFIAFGLKLALERR" FT misc_feature complement(1548071..1548418) FT /note="HMMPfam hit to PF01810, LysE type translocator, FT score 4.7e-05" FT misc_feature complement(join(1548104..1548169,1548200..1548265, FT 1548350..1548400,1548440..1548505,1548545..1548610)) FT /note="5 probable transmembrane helices predicted for FT BPP1447 by TMHMM2.0 at aa 15-37, 50-72, 85-102, 130-152 and FT 162-184" FT CDS 1548717..1549253 FT /transl_table=11 FT /locus_tag="BPP1448" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc0785 or Rs05053 SWALL:Q8Y1A5 (EMBL:AL646061) FT (182 aa) fasta scores: E(): 1.5e-37, 55.23% id in 172 aa, FT and to Yersinia pestis hypothetical protein Ypo1065 FT SWALL:Q8ZH46 (EMBL:AJ414146) (182 aa) fasta scores: E(): FT 1.1e-30, 46.06% id in 178 aa" FT /protein_id="CAE36750.1" FT /translation="MALRATIYKADLHVADTDRHYYASHGLTIARHPSETDERMMVRVL FT AYALHADEQLAFTKGLSDTDEPDLWRKDLTGDIELWVEVGQPDERRILKACGRAAEVVV FT YCYGGHASQVWWDGVRGKLERARNLRVVCLPAAQTEALAQLARRTMQVHVNISDGAAFV FT STDEGQVQVEPQSWR" FT CDS complement(join(1549387..1549599,1549601..1550578)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1449" FT /product="putative membrane protein (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0980" FT /db_xref="PSEUDO:CAE36751.1" FT misc_feature complement(join(1549412..1549477,1549490..1549555, FT 1549592..1549657,1549670..1549735,1549763..1549828, FT 1549859..1549924,1550009..1550074,1550090..1550155, FT 1550213..1550263,1550276..1550326,1550363..1550428, FT 1550459..1550515)) FT /note="12 probable transmembrane helices predicted for FT BPP1449 by TMHMM2.0 at aa 21-40, 50-72, 84-101, 105-122, FT 141-163, 168-190, 218-240, 250-272, 281-303, 307-329, FT 341-363 and 367-389" FT variation complement(1549600) FT /note="frameshift, (A) in parapertussis and pertussis; no FT frameshift, (-) in bronchiseptica" FT CDS complement(1550645..1551217) FT /transl_table=11 FT /locus_tag="BPP1450" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0981" FT /protein_id="CAE36752.1" FT /translation="MTTPIPLARGWLPAAPSTLDPLRKYWLFRPGALTAGLRQLGHVRL FT RVLAEYPTGAPRDEADGMRIAAQSPVWVREVLMSIDGVDSVVARSLTPLRASHGVWQGM FT RRLLTRPLADMLYHDPGIHRSVFVCRRLAAGVPFHATAIARAPAGGPEPALWARRSAFW FT RAGQPLLVAECFLPAFWSLARAPVAPR" FT CDS 1551277..1552008 FT /transl_table=11 FT /locus_tag="BPP1451" FT /product="putative RNA pseudouridylate synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0982" FT /protein_id="CAE36753.1" FT /translation="MEKVRISKLMSERGLCSRREADSYIERGWVRVDGVVVSELGARAF FT PDQAITLERAAAARQTARVTILLHKPVGYVSGQAEKGYTPAVALIDARSRHAGDRAPLR FT FERGQLQGLAVAGRLDIDSQGLLVLTQDGRIAKKLIGEDSEVDKEYLVRVQGRLSEAGL FT ALLNHGLSLDGKPLRPAQVRWQNADQLRFVLREGKKRQIRRMCELVGLRVVGLKRVRIG FT RVSLGDLPVGQWRYLRADERF" FT misc_feature 1551286..1551426 FT /note="HMMPfam hit to PF01479, S4 domain, score 0.00021" FT misc_feature 1551466..1551900 FT /note="HMMPfam hit to PF00849, RNA pseudouridylate FT synthase, score 9.2e-08" FT CDS complement(1552060..1552977) FT /transl_table=11 FT /locus_tag="BPP1452" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0983" FT /protein_id="CAE36754.1" FT /translation="MELFVEVARTLSFSRAAENLAIPKSTLSRQVAELERSVGLRLLSR FT TTRRVELTEAGQLYFERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEA FT FTEFSRRYPEVTFYLDLASPEHAERVFQTCDVSIEIGDLPDSTHIARLLGVLPAHLYAS FT PDYLARHGEPQHPDDLPRHECIQFRAGTGRVTRWPLNSGERHVEITPGNRFSVNSVSMV FT RNLATLGAGIAILAPMGNVREDIESGRLKRILPDWLAGPFPVYAVTDTRMLPAKTRIFV FT EFLMERLSNKTLAGQNNPAFLNLR" FT misc_feature complement(1552111..1552737) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 4.7e-39" FT misc_feature complement(1552807..1552977) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.3e-18" FT misc_feature complement(1552852..1552944) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(1552912..1552959) FT /note="PS00063 Aldo/keto reductase family putative active FT site signature." FT CDS 1553228..1554418 FT /transl_table=11 FT /gene="acrA" FT /gene_synonym="mtcA" FT /gene_synonym="lir" FT /locus_tag="BPP1453" FT /product="acriflavine resistance protein a precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0984" FT /protein_id="CAE36755.1" FT /translation="MKNNYLVGRGIAALSLAALTLTLAACGKEQQAAQQGGQPQVGVVT FT LKTQSVALFSELPGRTAAYRIAEVCPQVSGIVQKRLFTEGGEVAAGQQLYQIDPALYQA FT EVDSRRAALARVQAQLKTATLLVQRYKPLVDTRAVSRQAYDDAVAARDQASADVLAAKA FT ALDTARINLVYTKVLAPIGGIIGRSNVTEGALVTANQSAAVAAVQQIDPIYVDVTQSSV FT QLLRLKSALDSGLLQREAGEQSARVTLTLEDGTQYDQDGKLQFSEVTVDPGTGSVLLRA FT VFPNPQRKLLPGMFVRARLAEGVASEGLLVPQRGVTRNQRGLPTALVVNVENKVELRTL FT KTDRAIGDQWLVSSGLAAGDRVIVEGLQSVRPGAEVKAAEWSPPASKAAAQPAAAK" FT misc_feature 1553228..1553308 FT /note="Signal peptide predicted for BPP1453 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.987) with cleavage site FT probability 0.681 between residues 32 and 33" FT misc_feature 1553273..1553305 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 1553420..1554319 FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein, score 1.3e-68" FT CDS 1554431..1557610 FT /transl_table=11 FT /gene="acrB" FT /gene_synonym="acrE" FT /locus_tag="BPP1454" FT /product="acriflavine resistance protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP0985" FT /protein_id="CAE36756.1" FT /translation="MTKFFIDRPVFAWVIAIVLMMAGALSILSLPVAQYPNIAPPAISI FT NVTYPGASAQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQ FT VQVQNKLAVAQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQ FT DPISRTPGVGDFQLFGAPYAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQ FT PAVRGQQLNATVIGPSRLQTPEAFGRILLKVNSDGSQVRLKDVASIELGAQTYAIDSYY FT NGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEGV FT VKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV FT LAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMSQITGALIGIAMVLAVVFVPMAF FT FGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGRFNR FT TFERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQ FT APAGATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNE FT RKGAEHRAAAVAARANAKFRAELRDAQAAVFVPPAVMELGNATGFDFQLQDRAGVGHEK FT LLAARNQLLQEAGASPMLVAVRPNGIEDAPQYQLDIDREKARALGVSITEINNTLATAW FT GSSYVNDFIDRGRVKKVFVQGEASSRMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGP FT QKLNRYNGVPSYNIQGQAAPGYSSGDAMAEMERLADKLPLGIGYDWTGLSFEERLSGAQ FT APALYAISLIVVFLCLAALYESWSIPTAVMLVVPLGVVGALLATLTRGLSNDVYFQVGL FT LTTIGLAAKNAILIVEFAKEHYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAI FT STGAGSGSQNAIGTGVIGGMLTGTFLAIFFVPLFFVLTLRLFKVKRASENREDDDPHGG FT AQPATHGGQPQ" FT misc_feature 1554431..1554532 FT /note="Signal peptide predicted for BPP1454 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.983) with cleavage site FT probability 0.738 between residues 34 and 35" FT misc_feature 1554431..1557514 FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score FT 0" FT misc_feature join(1554467..1554535,1555439..1555507,1555526..1555594, FT 1555604..1555672,1555742..1555810,1555838..1555906, FT 1556048..1556116,1557035..1557103,1557122..1557190, FT 1557203..1557271,1557344..1557412,1557440..1557508) FT /note="12 probable transmembrane helices predicted for FT BPP1454 by TMHMM2.0 at aa 13-35, 337-359, 366-388, 392-414, FT 438-460, 470-492, 540-562, 869-891, 898-920, 925-947, FT 972-994 and 1004-1026" FT misc_feature 1555949..1555972 FT /note="PS00242 Integrins alpha chain signature." FT CDS 1557607..1559073 FT /transl_table=11 FT /gene="cusC" FT /gene_synonym="ibeB" FT /locus_tag="BPP1455" FT /product="probable outer membrane lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0986" FT /protein_id="CAE36757.1" FT /translation="MKPAVMRTLLSLAVATALAGCSLAPTYERPQAPVDAAYPSGPAYG FT APGQAAAGAPAAADVGWRDFFGDPLLQELLALSLANNRDLRVAALNVEAARAQYRIQRA FT DLAPSVGVGGTGSVQRTPADLNPSGQAGISRSYQVGASLSTWELDLFGRIRSLSEQALQ FT LYLAQDETRLATQLTLVAETANAYLTLRADQELLALTRQTLVAQQESYKLTRQSYDLGV FT ATELDLSQAEISLRTAERNLSQYTRMAAQDRNALVLLVGQPLPAGIGAQLDQAVALPDG FT VVLADLPAGLPSDLLARRPDIRAAEHQLQAANASIGAARVAFFPRISLTGSAGTASASL FT GGLFDAGSGAWSFAPQISVPIFAGGALRASLDLAKIQKDIGIARYEQAIQSGFREVSDA FT LAGRGTLQEQIRSQELLVQANQRAYDLSQQRYQQGIDNYLSVLDSQRSLYTAQQTLVET FT RLARLSNLIQLYKALGGGWSERTVAAAQAG" FT misc_feature 1557607..1557678 FT /note="Signal peptide predicted for BPP1455 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.604 between residues 24 and 25" FT misc_feature 1557637..1557669 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 1557817..1558422 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 2.1e-44" FT misc_feature 1558468..1559061 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 3.9e-54" FT CDS complement(1559143..1559394) FT /transl_table=11 FT /locus_tag="BPP1456" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0987" FT /protein_id="CAE36758.1" FT /translation="MSIIIMIIVGFVVGLIARAIMPGDQNMGYIMTTILGIIGSVVAGF FT LGQQLGWYAPGEPAGWIGSVVGAIIVLFVVGLVAKKRA" FT misc_feature complement(join(1559158..1559214,1559245..1559310, FT 1559332..1559382)) FT /note="3 probable transmembrane helices predicted for FT BPP1456 by TMHMM2.0 at aa 4-21, 28-50 and 60-79" FT CDS complement(1559540..1560190) FT /transl_table=11 FT /locus_tag="BPP1457" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0988" FT /protein_id="CAE36759.1" FT /translation="MRAPHRRLAVSTMYSPLSGRAWRGLLLAMLMLLAACSERSADWSL FT YNVKGHLPDLKFSLPGAHGKTVSSDDLKGKTVLLFFGYASCPDVCPTTMAQLTAVLQQL FT GEQARDVRILFVSVDPHRDTPDILQAYVNAFNNNAIGVTGNEKQIADLARRYRLAYQIE FT KPKPGDDADIYDVTHSRGVYIFDNQGKARLLASDTDTIDTMVKDLRQLIAQTQ" FT misc_feature complement(1559594..1560118) FT /note="HMMPfam hit to PF02630, SCO1/SenC, score 6.2e-26" FT misc_feature complement(1560068..1560190) FT /note="Signal peptide predicted for BPP1457 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.981) with cleavage site FT probability 0.737 between residues 41 and 42" FT misc_feature complement(1560083..1560115) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(1560325..1562439) FT /transl_table=11 FT /gene="prlC" FT /gene_synonym="opdA" FT /locus_tag="BPP1458" FT /product="oligopeptidase A" FT /EC_number="3.4.24.70" FT /note="ortholog of Bordetella pertussis (BX470248) BP0989" FT /protein_id="CAE36760.1" FT /translation="MACAPFGPRPLVHGIPKPMTQNPLLAPVADLVDYAAVKPEHIVPA FT VQALLDIARAAVEHAADPALPATWDAVVAPLDSASERLWRAWSVAGHLNAVVNTPVLRE FT AYNAALPLVTEFSTWVGLHEGLYRQYQRLQAAEDFAAWPPVRRRVVELALRDFRLSGVE FT LQGAARERYAEISDREAQASQKFSENVLDAIDAWSLLVDDQARLDGIPADVLAAARKAA FT EDDGATGWKLTLKMPCYLPVMQYARDRALRETLYRAYGTVASEHGDAAYDNSPLIEELL FT QLRADEAGLLQYPTFAALRLQTRMARDATEVVDFLRDLARRAKPYAERDLAELQAFAAG FT ELGLAELQPWDVPFAAERLRESRYAYSEDEIKQYFTEPRVLAGLFEVIETLFDVRLREV FT PVSSWHADVRGVRVESPAGATLGHLYLDLYARAGKQSGAWVDSERSRRSVQGDLQTPVA FT YLTCNFSRPNGDKAALLTHDDVITLFHETGHALHALLSEVDEPGAAAFASVEWDAIELP FT SQFMENFCWEWSVVQKLSAHVETGQPLPRDLYDRLVAARNFQSGMQTVRQIEFALFDMM FT LHDRPQGAPIADVLALLQQVRQEVAVLFPPAWHRLPHSFSHLFAGGYGAGYYSYKWAEV FT LSADAYEAFEEAARQGEPAATTLDGATGARFRKEILAVGGARPAADSFRAFRGREPRID FT ALLRHSGMQA" FT misc_feature complement(1560334..1561716) FT /note="HMMPfam hit to PF01432, Peptidase family M3, score FT 3.4e-154" FT CDS complement(1562515..1563366) FT /transl_table=11 FT /gene="folD" FT /gene_synonym="ads" FT /locus_tag="BPP1459" FT /product="FolD bifunctional protein [includes: FT methylenetetrahydrofolate dehydrogenase and FT methylenetetrahydrofolate cyclohydrolase]" FT /EC_number="1.5.1.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP0990" FT /protein_id="CAE36761.1" FT /translation="MTARIIDGAALSQRIREEVAQRVQALTAKGVRPGLAVVLVGDDPA FT SQVYVRNKVAACEKAGLHSVKEQYPADLTEAQLLERIDALNRDPSIHGILVQLPLPRHM FT DAHKVIEAIAAEKDVDGFHISNAGLLMTGQPLFRPCTPYGVMKMLESEGVALRGAEAVI FT VGASNIVGKPMAMLLLQAGATITICNSKTRDLGAQTRRADVLVVATGKPGMIDGSMIKP FT GAVVIDVGINRGADGKLCGDVDMASAREVAGAISPVPGGVGPMTIAMLLVNTVEAAERA FT AA" FT misc_feature complement(1562521..1563003) FT /note="HMMPfam hit to PF02882, Tetrahydrofolate FT dehydrogenase/cyclohydrolase, NAD(P)-binding domain, score FT 3.5e-92" FT misc_feature complement(1562566..1562592) FT /note="PS00767 Tetrahydrofolate FT dehydrogenase/cyclohydrolase signature 2." FT misc_feature complement(1563007..1563366) FT /note="HMMPfam hit to PF00763, Tetrahydrofolate FT dehydrogenase/cyclohydrolase, catalytic domain, score FT 5.5e-67" FT misc_feature complement(1563067..1563144) FT /note="PS00766 Tetrahydrofolate FT dehydrogenase/cyclohydrolase signature 1." FT CDS complement(1563363..1563989) FT /transl_table=11 FT /locus_tag="BPP1460" FT /product="two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0991" FT /protein_id="CAE36762.1" FT /translation="MNTPHLSSTVFIVDDDEAVRDSLRWLLEANGYRVRAYASGENFLD FT EYDASQIGVLIADVRMPGMSGLELQEQLIARNAPLPIVFITGHGDVPMAVSTMKKGAVD FT FLEKPFNESDLREIVARMLEQAVQRISKFQAQKDHEAMLARLTAREQQVLERIVAGRLN FT KQIADDLGISIKTVEAHRANIMEKLEVTTVADLMKVALAKPEAHA" FT misc_feature complement(1563369..1563563) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family, score 8.9e-20" FT misc_feature complement(1563429..1563512) FT /note="PS00622 Bacterial regulatory proteins, luxR family FT signature." FT misc_feature complement(1563609..1563968) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 6.6e-40" FT CDS complement(1563986..1565740) FT /transl_table=11 FT /locus_tag="BPP1461" FT /product="tw-component sensor kinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0992" FT /protein_id="CAE36763.1" FT /translation="MSSPPKSNIPMSFRDHARARRRGVYWLTPALVLVLYICVMGVFFW FT LQRIHDDSVMFVTIDQELRQQRLIWVVLALSCVIVISLLMLWRYTRFRSEAEAALIAET FT GFRRAMENSMSTGMRVLDMEGRIAYVNPAFCRMIGWNEADLIGRSPPFPYWVPGRHEQH FT QHTLEVLTSGKTPSSGLEVEAQRRDGSRFTARMYVSPLLDPNGDQIGWMTSMTDITEPK FT RIREALTAAHERFMTVLEGLDDAISVTADTHDGLELLFANRTYRRVFGAQTGGHNELLA FT GRRGRFTDESVEVLAPSVQRWFEVHHRMLAWTDGRRVRMQVARDITERRVHEEASRVQQ FT EKIQLTSRLTTMGEMASSLAHELNQPLTAIANYSMGAVALVKAGHTSPNMLLPALEKAA FT SQAERAGKIISRIREFVKRSEPRRQRVAISRIVDNAIGFAEIDARKRRIRIERFVPSNA FT PDVLADPILIEQVLLNLLKNGLEAMEKSESDELKVAVIPHEQHIEVAVVDRGHGLPEPE FT RLFEPFFSTKSQGLGMGLNICRTIIESHHGRLWADPNPAGGTIFRFTLPCATPQSQAQN FT DQSEELHA" FT misc_feature complement(1564037..1564354) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 1.6e-32" FT misc_feature complement(1564478..1564690) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 1.3e-08" FT misc_feature complement(1565078..1565206) FT /note="HMMPfam hit to PF00785, PAC motif, score 4.2e-07" FT misc_feature complement(1565231..1565428) FT /note="HMMPfam hit to PF00989, PAS domain, score 6.7e-10" FT misc_feature complement(join(1565474..1565539,1565603..1565668)) FT /note="2 probable transmembrane helices predicted for FT BPP1461 by TMHMM2.0 at aa 24-46 and 67-89" FT CDS 1566033..1568738 FT /transl_table=11 FT /gene="aceE" FT /locus_tag="BPP1462" FT /product="pyruvate dehydrogenase E1 component" FT /EC_number="1.2.4.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0993" FT /protein_id="CAE36764.1" FT /translation="MSSFAQAGALAAANDEDTLETQEWLEALAAVLDREGPQRAHYLLE FT RLIDEARRSGAHIPFSPNTAYVNTIPPGLEPAHPGNLELEARIRSYVRWNAMAMVVRAN FT KHNPPDGGDLGGHIASFASLATMIGCGQNHFWHGETEEHGGDLVYFQGHTSPGMYGRAY FT LEGRLTEDQLNHFRREVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPLMAIYQARFLKYL FT HARGIADTSNRKVWVFCGDGEMDEPESLGAIALAAREKLDNLIFVINCNLQRLDGPVRG FT NGKIIQELEGDFRGSGWNVIKLIWGGYWDPLLAHDKEGILRRIMEEAVDGEYQAYKAND FT GKYVREHFFGKHPKLLEMVARMSDEDIWRLNRGGHDPHKVYAAFDAASKHAGQPTVILA FT KTIKGYGMGHVGQAKNPTHQQKKLELDSIREFRDRFGIPIPDDKLEELPYYKPAEDSPE FT MQYLHERRKALGGYLPKRRAKADEQLKAPALDAFKAVLEPTAEGREISTTQAFVRVLNQ FT ILRDKDLGPRVVPILADESRTFGMEGLFRQIGIYAPEGQKYTPVDKDQVMYYKESADGQ FT LLQEGINEAGAMSSWMAAATSYSTNNRIMVPFYIYYSMFGFQRVGDLAWAAGDMQARGF FT LLGGTAGRTTLNGEGLQHEDGHSHLLASTIPNCVSYDPTFAHELAVIIQHGLKRMVEDQ FT ENVYYYLTVMNENYPQPGLTAGDEEGIIRGMYKLKSHGKGKQRVQLMGSGTILREVMAA FT QELLEADWGVASDIWSVTSLTELRRDGLDAERHNLLHPEGKQQVPYVTTQLAKSEGPII FT ASTDYMKLFADQIRPFVPKDRTYKVLGTDGFGRSDFRYKLREHFEVDRHFVVLASLRAL FT ADEGKIPAAKVAEAIKKYGINPNKANPHHA" FT misc_feature 1566282..1567454 FT /note="HMMPfam hit to PF00456, Transketolase, thiamine FT diphosphate binding domain, score 6.8e-06" FT CDS 1568751..1570373 FT /transl_table=11 FT /gene="aceF" FT /locus_tag="BPP1463" FT /product="dihydrolipoamide acetyltransferase component of FT pyruvate dehydrogenase complex" FT /EC_number="2.3.1.12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0994" FT /protein_id="CAE36765.1" FT /translation="MSNIVEIKVPDIGDFKEVEVIEVLVSAGDTIKAEQSLITVESDKA FT SMEIPASAAGVVKSVKVKVGDKIAEGTVILEVEAAGEAAAAPKAEQAPEAAEAPKADAA FT KAEAPAAAGPIEVKVPDIGDFKEVEVIEVLVAEGDTIKAEQSLITVESDKASMEIPASA FT GGVVQSLKVKVGDKVAMGTVIAVVQGQGAAAPAAKAEAPAAAEPAASASASAPAPAQRP FT APAAALQDEDLKPGQLPHASPSVRKFARELGVNLSRVTGSAAKGRITADDVRAYVKQAL FT SAGAPAGASGGGDGAALGLLPWPKIDFTKFGPIEAKPLSRIKKISGANLHRNWVMIPHV FT TNNDEADITDLEALRVALNKENEKSGVKVTMLAFLIKAVVAALKKFPEFNASLDGDNLV FT LKQYYHIGFAADTPNGLVVPVVRDADKKGILELARETSELARKAREGKVSPAEMQGGCF FT SISSLGGIGGTHFTPIINAPEVAILGVSRSAHKPVWDGKQFVPRLTLPLSLSYDHRVID FT GASAARFNAYLGQLLADFRRIAL" FT misc_feature 1568763..1568981 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme, FT score 1.4e-23" FT misc_feature 1568832..1568921 FT /note="PS00189 2-oxo acid dehydrogenases acyltransferase FT component lipoyl binding site." FT misc_feature 1569093..1569311 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme, FT score 1.7e-22" FT misc_feature 1569162..1569251 FT /note="PS00189 2-oxo acid dehydrogenases acyltransferase FT component lipoyl binding site." FT misc_feature 1569465..1569581 FT /note="HMMPfam hit to PF02817, e3 binding domain, score FT 2.3e-13" FT misc_feature 1569681..1570367 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00198, 2-oxo acid dehydrogenases FT acyltransferase (catalytic domain), score 4.5e-105" FT CDS 1570386..1572161 FT /transl_table=11 FT /gene="lpdA" FT /gene_synonym="lpd" FT /locus_tag="BPP1464" FT /product="dihydrolipoamide dehydrogenase" FT /EC_number="1.8.1.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0995" FT /protein_id="CAE36766.1" FT /translation="MSNIVEIKVPDIGDFKEVEVIEVLVAAGDTIKAEQSLITVESDKA FT SMEIPASSAGVVKSVKVKVGDKVAEGTVILDVEAAGEAAAAPKAEAPKAEAPKADAPKA FT PAAKASAPAAAAYSGSADLECDMLVLGAGPGGYSAAFRAADLGMDTVMVERYATLGGVC FT LNVGCIPSKALLHNAAVIDEARALAAHGISFGEPKVDLDKLRGYKDGVVAKLTGGLAGM FT ARACKVRVATGTGEFADPHHLTVTDGEGKKQTIRFKQAIIAAGSQSVKLPFLPDDERIV FT DSTGALQLRAIPKKMLIIGGGIIGLEMGTVYSTLGARLDVVEMLDGLMQGADRDLVKVW FT QKMNAPRFDNIMLKTKTVGAEARKDGIYVSFEGEGAPKEPQRYDLVLQAVGRSPNGKKI FT GAERAGVAVTERGFIEVDRQMRTNVPHIYAIGDVVGQPMLAHKAVHEGHVAAEAAHGEK FT SFFDARVIPSVAYTDPEVAWVGLTEDEAKKQGVKVEKGLFPWAASGRAIANGRDEGFTK FT LLFDAETHRIVGGGIVGTHAGDLISEIALAIEMGADMVDIGKTIHPHPTLGESVGMAAE FT VAEGVCTDLPPMRKK" FT misc_feature 1570398..1570616 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme, FT score 8.7e-24" FT misc_feature 1570467..1570556 FT /note="PS00189 2-oxo acid dehydrogenases acyltransferase FT component lipoyl binding site." FT misc_feature 1570761..1571711 FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, score 6.1e-83" FT misc_feature 1570863..1570895 FT /note="PS00076 Pyridine nucleotide-disulphide FT oxidoreductases class-I active site." FT misc_feature 1571781..1572110 FT /note="HMMPfam hit to PF02852, Pyridine FT nucleotide-disulphide oxidoreductase, dimerisation domain, FT score 1.2e-49" FT CDS complement(1572384..1573562) FT /transl_table=11 FT /gene="flaA" FT /locus_tag="BPP1465" FT /product="flagellin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0996" FT /protein_id="CAE36767.1" FT /translation="MAAVINTNYLSLVAQNNLNKSQSALGSAIERLSSGLRINSAKDDA FT AGQAIANRFTANVKGLTQAARNANDGISIAQTTEGALNEINNNLQRIRELTVQASNGTN FT SASDIDSIQQEVNQRLEEINRIAEQTDFNGIKVLKSNATDMTLSIQVGAKDNETIDIKI FT DRNSNWNLYDAVGTVPGGTVNGEARTVNALGFDVLSAVTTTIASSDTVTFDAAVAAAEQ FT AAGAAVGDGSVVSYGDTANPQYAVVVDNAGTMTSYALTFDKDGKAALGDQLGAVASQAA FT EAAVGTNDVAAGANVTVSGGAADALSKLDDAMKAVDEQRSSLGAIQNRFESTVANLNNT FT ITNLSAARSRIEDSDYATEVSNMTKNQILQQAGTSVLAQANQVPQNVLSLLR" FT misc_feature complement(1572453..1572668) FT /note="HMMPfam hit to PF00700, Bacterial flagellin FT C-terminus, score 7.9e-41" FT misc_feature complement(1573047..1573478) FT /note="HMMPfam hit to PF00669, Bacterial flagellin FT N-terminus, score 2.6e-78" FT CDS complement(join(1573949..1574029,1574032..1574688)) FT /pseudo FT /transl_table=11 FT /gene="fliA" FT /gene_synonym="flaD" FT /locus_tag="BPP1466" FT /product="RNA polymerase sigma factor for flagellar operon FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1021" FT /db_xref="PSEUDO:CAE36768.1" FT misc_feature complement(join(1574012..1574029,1574032..1574685)) FT /note="HMMPfam hit to PF00140, Sigma-70 factor, score FT 2.8e-59" FT variation complement(1574030..1574033) FT /note="(C)4 in parapertussis; (C)2 in pertussis" FT misc_feature complement(1574548..1574589) FT /note="PS00715 Sigma-70 factors family signature 1." FT CDS 1575124..1575447 FT /transl_table=11 FT /gene="flhD" FT /gene_synonym="flbB" FT /gene_synonym="frlA" FT /locus_tag="BPP1467" FT /product="flagellar transcriptional activator FlbB" FT /note="ortholog of Bordetella pertussis (BX470248) BP1022" FT /protein_id="CAE36769.1" FT /translation="MKTADSSLLADIREVNLSYLLLAQRMLRDDYAASMFRLGFSNEVA FT DILMRLSPAQLVKLASSSSLLCRFRFDDYSLLSALTQDVLGGALQQAHATILLARQPVE FT ELA" FT CDS 1575482..1576042 FT /transl_table=11 FT /gene="flhC" FT /gene_synonym="flaI" FT /gene_synonym="frlB" FT /locus_tag="BPP1468" FT /product="flagellar transcriptional activator FlhC" FT /note="ortholog of Bordetella pertussis (BX470248) BP1023" FT /protein_id="CAE36770.1" FT /translation="MATKSVSQEADEILLASSMITLGARLQVLQAETGLSHDRLARLYR FT EIRGCSPPKGMLPFSVDWFMTWLPNIHSSLFYNVYTFLNQRTSSQGIRAVIDAYRLYLE FT HAPADAAEPVLSFTRAWMLVRFFDGGMLQLSGCRQCGGHFIAHAHDPQTDFVCAICRPP FT PRAGKTRAAARARAGQLAAPARP" FT CDS 1576163..1577038 FT /transl_table=11 FT /gene="motA" FT /locus_tag="BPP1469" FT /product="chemotaxis protein MotA" FT /note="ortholog of Bordetella pertussis (BX470248) BP1024" FT /protein_id="CAE36771.1" FT /translation="MLIVIGYAVVILAVVGSFIGLGGHLGALYQPFELTLIAGAAVGAF FT MAGNSRKSLGLVAKAIPEAFRSSPYSKDVYMELMALLYVLLNKARREGLMAIESHIEDP FT LSSPIFNEYPRIMKDAKLMEFITDYLRIMISGNMSSFEIETLMDEEIETYRHEREVPTH FT ALQQVADALPAFGIVAAVLGVIKALAAVDQPPAILGDLISKAMVGTFLGVLLAYGFVAP FT MAARIERRTSESVKVLECIKVTLLASMNGYPPQLAVEFGRKVLFSAVRPSFGELEEHVR FT QAKSAATGRA" FT misc_feature join(1576166..1576234,1576244..1576312,1576664..1576732, FT 1576775..1576843) FT /note="4 probable transmembrane helices predicted for FT BPP1469 by TMHMM2.0 at aa 2-24, 28-50, 168-190 and 205-227" FT misc_feature 1576775..1576828 FT /note="PS01307 Flagellar motor protein motA family FT signature." FT CDS 1577051..1577998 FT /transl_table=11 FT /gene="motB" FT /locus_tag="BPP1470" FT /product="chemotaxis protein MotB" FT /note="ortholog of Bordetella pertussis (BX470248) BP1025" FT /protein_id="CAE36772.1" FT /translation="MSTVNNHRVVIRRRKVRRGGHHGGSWKIAYADFITAMMAFFLVMW FT LISIVPREELKGIAEYFRMPLRVALTGGPSSSAETSAIPGGGQDPLRSQGDVRRAEGNR FT VEAQPMGDAERRDRHRLERLKVRLENLIEESPVLKNFRPQLLIDMTTEGLRIQIVDNQN FT RPMFATGSADVQPYMRDILRELGPVLNDLPNKISIAGHTDASQYARGERAYSNWELSAD FT RANASRQELVAGGMHEGKVLRIQGLASSMSLVKDDPFAAVNRRISLVVLNASTQRRIEN FT ENAAAADVNARDAQGVGAALAGQLAASGSDGGAR" FT misc_feature 1577132..1577200 FT /note="1 probable transmembrane helix predicted for BPP1470 FT by TMHMM2.0 at aa 28-50" FT misc_feature 1577546..1577842 FT /note="HMMPfam hit to PF00691, OmpA family, score 7.9e-21" FT CDS 1578013..1578393 FT /transl_table=11 FT /gene="cheY" FT /locus_tag="BPP1471" FT /product="chemotaxis protein CheY" FT /note="ortholog of Bordetella pertussis (BX470248) BP1026" FT /protein_id="CAE36773.1" FT /translation="MTARILVADDSATMRMIVQAALTGAGWQVVTASDGKQALELAQAQ FT AVDLVVSDWNMPVMGGLDLIRGLRGQARYQDLPVLVLTTEDDGDSKAAARDLGVCGWLN FT KPLDPDVLVDLAAELLGVAPGA" FT misc_feature 1578019..1578384 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 7.6e-29" FT CDS 1578420..1580477 FT /transl_table=11 FT /gene="cheA" FT /locus_tag="BPP1472" FT /product="chemotaxis protein CheA" FT /note="ortholog of Bordetella pertussis (BX470248) BP1028" FT /protein_id="CAE36774.1" FT /translation="MSSGLDLSQFYETFFDEADELLAQMEQLLLELDVGAPDIEQLNAI FT FRAAHSIKGGAATFGCFQKLAGTTHLLENLLDAIRRGEMGLRADMVDIFLETKDVLKSQ FT LDAYRASEEPEDAVFERICAVLRQLALEGGQAPAAAAPAPVAASEPGPEPEPAPQPAAA FT STAAGLPLRVRFSKVSDKDAQSLLEEMGNLGDVRASERAGQTLTVWVDTTCSPDDIEAV FT CCFIIDADQLEIAREAEPAHASAQAAVAAAPDAAATPAPVAAPAAAQAAEPARAARPSI FT APAHADKESTSIRVGVEKVDQVINLVGELVITQAMLAQTASTLDPVLHDRLLNGMEQLE FT RNARDLQEAVMSIRMMPMDYVFSRFPRLVRDIAGKMGKQIELQTYGRATELDKSLIERI FT IDPLTHLVRNSLDHGIETPDKRVAAGKEPVGQLVLSAQHNGGNIVIEVSDDGGGLSRER FT ILRKAVAQGLTVNENSPDDEIWQLIFAPGFSTGDQVTDISGRGVGMDVVRRNIQDMGGH FT VQLSSVPGQGTTTRIVLPLTLAILDGMSVRVGEETFILPLNHVTESLQPQADQIYSVAG FT NERVMQVRGEYLPLVEMHRVFSVGQAQADPTQAIAVIMQAEERRFALLVDHLVGQHQVV FT VKNLESNYRKVPGISAATILGDGSVALIVDVFALARANREKWSQPEAILN" FT misc_feature 1578438..1578755 FT /note="HMMPfam hit to PF01627, Hpt domain, score 3.9e-36" FT misc_feature 1578459..1578485 FT /note="PS00039 DEAD-box subfamily ATP-dependent helicases FT signature." FT misc_feature 1579287..1579478 FT /note="HMMPfam hit to PF02895, Signal transducing histidine FT kinase, homodimeric domain, score 1.6e-22" FT misc_feature 1579611..1580030 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 1.2e-25" FT misc_feature 1580037..1580441 FT /note="HMMPfam hit to PF01584, CheW-like domain, score FT 6.1e-32" FT CDS 1580474..1580992 FT /transl_table=11 FT /gene="cheW" FT /locus_tag="BPP1473" FT /product="chemotaxis protein CheW" FT /note="ortholog of Bordetella pertussis (BX470248) BP1029" FT /protein_id="CAE36775.1" FT /translation="MTERHIMAAKPHTQATRAEDVGNEFLVFTLGEEEYGIDILKVQEI FT RGYDAATVTRIANVPSFIKGVTNLRGIIVPIVDLRIKFNLGSVEYNEQTVVIILNLDRR FT VVGIVVDGVSDVLMLNAAQVRPAPEFGATLSTEYLTGLGTVDERMLILVDIEKLMTSDE FT MALVEKVAS" FT misc_feature 1580537..1580962 FT /note="HMMPfam hit to PF01584, CheW-like domain, score FT 5.6e-49" FT CDS 1581066..1582772 FT /transl_table=11 FT /gene="tsr" FT /gene_synonym="cheD" FT /locus_tag="BPP1474" FT /product="methyl-accepting chemotaxis protein I" FT /note="ortholog of Bordetella pertussis (BX470248) BP1030" FT /protein_id="CAE36776.1" FT /translation="MRKFLANLSIRGSLLGVLAFFSFMLVVGAALGVLSLRVSNDTLQG FT VKQTQDVADAMDRVVNSYKDAFNGLGRAAASHYGAIVSAIGQPVQVEQGLGSEAAGLLQ FT RAKASLNRAETEYEYYKGLARPASAADSLKEVENAFEALVGQGLHPLAAALEKGDMAGY FT QSHAQNVLDALEGRFSGAIAAFDFWRASELLDAHEVAETRYRFVLAAVAAGGVLAALLV FT FSTYLFLRRRVLQPLREVGQHFDKIAAGDLTARVDVRNSNEIGQLFAGLKRMEESLTRT FT VAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQ FT ANQLAGVASDVAERGGSAVSEVVATMQDISASSRKISEIVSVIDGIAFQTNILALNAAV FT EAARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVGKVGTGSQQVERAGATMQ FT EIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQ FT EQAQRLAEAVAVFRINAGEVIEVPAHQLGSRQAPGARETALAHDDALALGH" FT misc_feature 1581066..1581152 FT /note="Signal peptide predicted for BPP1474 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.658 between residues 29 and 30" FT misc_feature join(1581108..1581176,1581681..1581749) FT /note="2 probable transmembrane helices predicted for FT BPP1474 by TMHMM2.0 at aa 15-37 and 206-228" FT misc_feature 1581696..1581905 FT /note="HMMPfam hit to PF00672, HAMP domain, score 9.7e-14" FT misc_feature 1581966..1582664 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain, score 5.6e-111" FT CDS 1582781..1583641 FT /transl_table=11 FT /gene="cheR" FT /gene_synonym="cheX" FT /locus_tag="BPP1475" FT /product="chemotaxis protein methyltransferase" FT /EC_number="2.1.1.80" FT /note="ortholog of Bordetella pertussis (BX470248) BP1031" FT /protein_id="CAE36777.1" FT /translation="MATAMTTPAFSAERQFEFRDADFARVRQMIYARAGISLGAHKREM FT VYSRLARRLRALGQQEFRVYLDGLENEPAAPEWEDFVNALTTNLTAFFRESHHFPILAD FT FARQRGGPVSVWCCAASTGEEPYSIAMTLVESLGARAQASQLLATDIDTNCLQRARAGV FT YPYERVAKLDPARLKRFFMRGRGANEGQVKVRAELADMVRFETLNLLAPHWPINEKFDA FT IFCRNVMIYFDKPTQARILRRFVPLLKPGGLLFAGHSENFTYISRDFRLRGQTVYEQAS FT GELPV" FT misc_feature 1582835..1583005 FT /note="HMMPfam hit to PF03705, CheR methyltransferase, FT all-alpha domain, score 5.8e-16" FT misc_feature 1583042..1583617 FT /note="HMMPfam hit to PF01739, CheR methyltransferase, SAM FT binding domain, score 9.7e-77" FT CDS 1583638..1584690 FT /transl_table=11 FT /gene="cheB" FT /locus_tag="BPP1476" FT /product="protein-glutamate methylesterase" FT /EC_number="3.1.1.61" FT /note="ortholog of Bordetella pertussis (BX470248) BP1032" FT /protein_id="CAE36778.1" FT /translation="MKKIKVLCVDDSALVRGLMTEIINSHPDMEVVATAPDPLVARELI FT KKHNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTERGGEITLRALELGAIDF FT VTKPKLGIRDGLIEYSEVIADKIRAASRARLRAPAPAGHAAPLRLRSPFASSEKLVIVG FT ASTGGTEAIREVLQPLPADSPAILITQHMPAGFTRSFAQRLDALCAVTVREASDGERVL FT PGHVYLAPGGETHMRLGRSGANYVIGLQASEPVNRHRPSVDVLFHSAAEAAGGNAIGVI FT LTGMGKDGAAGLLAMKRAGARTMAQDEASCVVFGMPREAIALGAADEVMPLADISERIL FT TRLGDRGHRV" FT misc_feature 1583647..1584018 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 1e-31" FT misc_feature 1584112..1584663 FT /note="HMMPfam hit to PF01339, CheB methylesterase, score FT 5.5e-110" FT CDS 1584743..1585132 FT /transl_table=11 FT /gene="cheY" FT /locus_tag="BPP1477" FT /product="chemotaxis protein CheY" FT /note="ortholog of Bordetella pertussis (BX470248) BP1033" FT /protein_id="CAE36779.1" FT /translation="MVDKGMKILVVDDFPTMRRIIRNLLKELGFENVDEAEDGAIGLEK FT LRNGAFQFVVSDWNMPNLDGLEMLKQIRADAALKSLPVLMVTAEAKKENIVAAAQAGAN FT GYVVKAFTAATLEEKLNKIFEKLAG" FT misc_feature 1584758..1585126 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 3.3e-39" FT CDS 1585141..1585773 FT /transl_table=11 FT /gene="cheZ" FT /locus_tag="BPP1478" FT /product="chemotaxis protein CheZ" FT /note="ortholog of Bordetella pertussis (BX470248) BP1034" FT /protein_id="CAE36780.1" FT /translation="MNATDTGMQADPTDLIQRIASLTRMLRDSMRELGLDQAIKDAAEA FT IPDARDRLRYLAQMTEQAANRVLNAIEAAGPIQDGMARGAQALDERWQQWYDQPLELPQ FT ARALVQDTRAFLAAVPQHTQQTQAKLMEIVMAQDFQDLTGQVIMRMMDVVGAIERELLQ FT VLLDNVPQERRDEANSLLNGPQVNPGGKADVVTSQDQVDDLLASLGF" FT CDS 1586000..1587154 FT /transl_table=11 FT /gene="flhB" FT /locus_tag="BPP1479" FT /product="flagellar biosynthetic protein FlhB" FT /note="ortholog of Bordetella pertussis (BX470248) BP1366" FT /protein_id="CAE36781.1" FT /translation="MAEESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVVG FT VWLSGSMLYQGLTGVLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVA FT VLSAVLLGGFVFSTKPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWV FT IWHYHDDMLGLMHVAPSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRM FT TKEDVRQEHKESEGDPHVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYAD FT GAAGAPRVVAKGTGLIAARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAV FT AEVLAWVFQLRSWRPGLGREPQAPTALAVPAELDPHSPPATQGA" FT misc_feature 1586015..1587043 FT /note="HMMPfam hit to PF01312, FlhB HrpN YscU SpaS Family, FT score 6e-141" FT misc_feature join(1586105..1586173,1586279..1586347,1586426..1586494, FT 1586552..1586620) FT /note="4 probable transmembrane helices predicted for FT BPP1479 by TMHMM2.0 at aa 36-58, 94-116, 143-165 and FT 185-207" FT CDS join(1587158..1588771,1588775..1589275) FT /pseudo FT /transl_table=11 FT /gene="flhA" FT /locus_tag="BPP1480" FT /product="flagellar biosynthesis protein FlhA (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1367" FT /db_xref="PSEUDO:CAE36782.1" FT misc_feature join(1587191..1587259,1587272..1587340,1587374..1587442, FT 1587500..1587568,1587773..1587841,1587899..1587967, FT 1588004..1588063,1588073..1588132) FT /note="8 probable transmembrane helices predicted for FT BPP1480 by TMHMM2.0 at aa 12-34, 39-61, 73-95, 115-137, FT 206-228, 248-270, 283-302 and 306-325" FT misc_feature join(1587236..1588771,1588775..1589239) FT /note="HMMPfam hit to PF00771, FHIPEP family, score 0" FT misc_feature 1587587..1587658 FT /note="PS00994 Bacterial export FHIPEP family signature." FT CDS join(1589272..1590645,1590644..1591630) FT /pseudo FT /transl_table=11 FT /gene="flhF" FT /locus_tag="BPP1481" FT /product="flagellar biosynthesis protein FlhF (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1368" FT /db_xref="PSEUDO:CAE36783.1" FT misc_feature 1589842..1590438 FT /note="HMMPfam hit to PF00448, SRP54-type protein, GTPase FT domain, score 2.5e-23" FT misc_feature 1589869..1589892 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT variation 1590643..1590645 FT /note="14 bp deletion in parapertussis, relative to FT pertussis, following this codon" FT CDS complement(1591648..1592130) FT /transl_table=11 FT /locus_tag="BPP1482" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1370" FT /protein_id="CAE36784.1" FT /translation="MNSAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQ FT RKETLADDLAQLGAERDALLSDAGLASGPAGTDAAAAAHPELGPLWQALQANAAQAREH FT NQRNGTLIAVNLRHTQESLDALRQAAGTGAAATYDAQGRGKRGYSSAASGRAIVAT" FT CDS complement(1592147..1592437) FT /transl_table=11 FT /gene="flgM" FT /locus_tag="BPP1483" FT /product="negative regulator of flagellin synthesis" FT /note="ortholog of Bordetella pertussis (BX470248) BP1371" FT /protein_id="CAE36785.1" FT /translation="MKIQSSTSHPVGPNAVGARAEHAVAQAYGGGAQAGSGSAQVALSP FT ASRQLLAQEGGSDIDVERVAAIRAAIASGQLRIDPTRIADSLIASARDLLK" FT CDS complement(1592564..1593439) FT /transl_table=11 FT /gene="flgA" FT /locus_tag="BPP1484" FT /product="flagella basal body P-ring formation protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1372" FT /protein_id="CAE36786.1" FT /translation="MRTDWPKKTGRTAWLAFWHDGILGCGRPPQKAKQPAISEPIRLLR FT GTAPFYNLPIMKSPRSRSIARLAALAILAGAMPRAAAEPPAQDPAELAAAAESYLRQQL FT AALPGEPSITLDPLRTDRLDACEALTPFMPSGMRVRARMTVGLRCVAPRTWTVYAQATV FT SVPGQYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAAAILGMRPAHRIAAGQP FT IKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPSATVQVRTASGQVVSGIV FT QAAGLVEIQL" FT misc_feature complement(1592570..1593073) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03240, FlgA family, score 5.8e-28" FT CDS 1593458..1593865 FT /transl_table=11 FT /gene="flgB" FT /gene_synonym="flbA" FT /gene_synonym="fla FII" FT /locus_tag="BPP1485" FT /product="flagellar basal-body rod protein FlgB" FT /note="ortholog of Bordetella pertussis (BX470248) BP1373" FT /protein_id="CAE36787.1" FT /translation="MLDRLNEDFRFFQQSIALRAQRQEVLSSNIANADTPNYKARDFDF FT KAAMQGALEQRMRLPDTNLALTSARHIPGQATTPSPAELMYRLPYQPSLDGNTVDMDSE FT RVRFADNTLHYQSSLQVLSGRIRSLMSAIQE" FT misc_feature 1593482..1593574 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein, score 1.9e-06" FT CDS 1593878..1594297 FT /transl_table=11 FT /gene="flgC" FT /gene_synonym="flaW" FT /gene_synonym="fla FIII" FT /locus_tag="BPP1486" FT /product="flagellar basal-body rod protein FlgC" FT /note="ortholog of Bordetella pertussis (BX470248) BP1374" FT /protein_id="CAE36788.1" FT /translation="MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRAR FT QVVFQVNPPPGQAFGQEIGGVRVAGVVEDQSPFKKIYDPKHPMADAQGYVNMPNVDPVA FT ETVNMIAASRSYQANVEVLNTAKQLMLKTLTIGQS" FT misc_feature 1593896..1593991 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein, score 1.1e-08" FT misc_feature 1593914..1593976 FT /note="PS00588 Flagella basal body rod proteins signature." FT CDS 1594345..1595049 FT /transl_table=11 FT /gene="flgD" FT /gene_synonym="flaV" FT /gene_synonym="fla FIV" FT /locus_tag="BPP1487" FT /product="basal-body rod modification protein FlgD" FT /note="ortholog of Bordetella pertussis (BX470248) BP1375" FT /protein_id="CAE36789.1" FT /translation="MTTVNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPL FT NPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVS FT LGTDPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGN FT NDGGQPLADGKYSITVSASDADANPVKTEALTYGQVKSVAYSTNGLRLDLGLAGQISML FT DVRKVIGASGSA" FT misc_feature 1594345..1594413 FT /note="Signal peptide predicted for BPP1487 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.780) with cleavage site FT probability 0.389 between residues 23 and 24" FT CDS 1595115..1596536 FT /transl_table=11 FT /gene="flgE" FT /gene_synonym="flaK" FT /gene_synonym="fla FV" FT /locus_tag="BPP1488" FT /product="flagellar hook protein FlgE" FT /note="ortholog of Bordetella pertussis (BX470248) BP1376" FT /protein_id="CAE36790.1" FT /translation="MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYAS FT SRVGLGVKVSAINQRFTVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVD FT KNFYIVNAQGFRLTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVIDPN FT DTPADDGAVELDGTTYRFTNASGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLASQPGY FT QPYKPLVAGIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYV FT LDGQPMQVNGGASQTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQ FT YGSDFAPKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPV FT GNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQT FT IKTQDEVMQVLMNMR" FT misc_feature 1595121..1595213 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein, score 3.4e-10" FT CDS 1596575..1597339 FT /transl_table=11 FT /gene="flgF" FT /gene_synonym="flaX" FT /gene_synonym="fla FVI" FT /locus_tag="BPP1489" FT /product="flagellar basal-body rod protein FlgF" FT /note="ortholog of Bordetella pertussis (BX470248) BP1377" FT /protein_id="CAE36791.1" FT /translation="MDRIIYTAMNGAARIAEHQTVLGNNMANVNTPGFREQIALYRSVP FT MADGTSLPTRVSTVASTPGNNFEMGNMMTTGRELDVALAGPGWFALQTPQGEAYTRAGA FT LQVGVNGLLQTATGQPVLSDQNAVIEVPDQASLTIASDGTVTAIGAGDPPNNILNLGRL FT KMVNPPPQQLVHGDDGVFRMPQQPGGQPAAPLPADPSQRLLSGVLEGSNASPMGAMVGM FT IQNARRFEMQMQVIREADKNAERANGILAAAS" FT misc_feature 1596587..1596679 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein, score 1.7e-06" FT misc_feature 1596605..1596667 FT /note="PS00588 Flagella basal body rod proteins signature." FT CDS join(1597383..1597862,1597866..1598168) FT /pseudo FT /transl_table=11 FT /gene="flgG" FT /gene_synonym="flaL" FT /gene_synonym="fla FVII" FT /locus_tag="BPP1490" FT /product="flagellar basal-body rod protein FlgG FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1378" FT /db_xref="PSEUDO:CAE36792.1" FT misc_feature 1597395..1597487 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein, score 1.1e-10" FT variation 1597863..1597865 FT /note="In-frame TAG stop codon in parapertussis; CAG in FT pertussis" FT CDS 1598165..1598857 FT /transl_table=11 FT /gene="flgH" FT /gene_synonym="flaY" FT /gene_synonym="fla FVIII" FT /locus_tag="BPP1491" FT /product="flagellar L-ring protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1379" FT /protein_id="CAE36793.1" FT /translation="MMLKTVLRLPVCAALLALAAGCAMIPPEPVVTGPLTAPPPPPPQP FT SARPNGSIYQPSAYGNYPLFEDRRPRNVGDIVTIVLEEKTNAAKGVATNTSRDGSATLG FT VAAAPRFMDGVINDKLDTDISGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAG FT EKQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADARIEYRSKGVMDEVQTMGWLQR FT FFLIASPF" FT misc_feature 1598165..1598260 FT /note="Signal peptide predicted for BPP1491 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.424 between residues 32 and 33" FT misc_feature 1598198..1598230 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 1598228..1598851 FT /note="HMMPfam hit to PF02107, Flagellar L-ring protein, FT score 2.9e-68" FT CDS 1598860..1599993 FT /transl_table=11 FT /gene="flgI" FT /gene_synonym="flaM" FT /gene_synonym="fla FIX" FT /locus_tag="BPP1492" FT /product="flagellar P-ring protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1380" FT /protein_id="CAE36794.1" FT /translation="MTFPTSLSVLLIPLARAVLALALLGAGAAHAERLKDLASIQGVRG FT NQLIGYGLVVGLDGSGDQVRQTPFTQQSLTNMLSQLGITVPQGSNMQLKNVAAVMVTAT FT LPSFARPGQTVDVVVSSMGNAKSLRGGTLLMTPLKGADNQVYAIAQGNLLVGGAGASAG FT GSSVQINQLNGGRISNGAIVERAVPTMYAQDGTVYLEMNNTDFGTTQNAAAAINRQFGA FT GTAMALDGRVIQVRGPLDPSMMPAFMSQVENLQVARAPATAKVIINARTGSVVMNRTVM FT IEEAAVAHGNLSVIINRQNQVFQPDTPFTEGQTVVVPNTQIEVRQDGGALQRVTTSANL FT ADVVKALNALGATPQDLLAILQAMKTAGALRADLEII" FT misc_feature 1598860..1598952 FT /note="Signal peptide predicted for BPP1492 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.990 between residues 31 and 32" FT misc_feature 1598878..1598946 FT /note="1 probable transmembrane helix predicted for BPP1492 FT by TMHMM2.0 at aa 7-29" FT misc_feature 1598956..1599987 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02119, Flagellar P-ring protein, FT score 4.1e-196" FT CDS 1600011..1601030 FT /transl_table=11 FT /gene="flgJ" FT /gene_synonym="flaZ" FT /gene_synonym="fla FX" FT /locus_tag="BPP1493" FT /product="peptidoglycan hydrolase" FT /EC_number="3.2.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1381" FT /protein_id="CAE36795.1" FT /translation="MSFVSYTPRPGVQESVFDLGRLADLKRDAVKAPDGQRQQTEVARQ FT FEALFLQMMLKRMREATPKEGLFDSQQTEMLQGMADEQLALQLASPGIGLAQALLGQMQ FT QGQPPVPAAAAAGGDAAAARALAGTAAPAPLVRDLRGNYVQPDPAPRREVNALLDVLRS FT NRARDRAMAAAEGAPSHVVDFVSRMSRAANVAAQQSGVPARLILGQAALESGWGRRELR FT HEDGSTSYNLFGIKAGASWKGKVVNVMTTEYVDGVAQKLVQPFRAYSSYEESFSDYARL FT IGNSPRYEAVTQAGNEIEAARRIQEAGYATDPRYAEKLISIMGQLRTSVARADFSGGL" FT misc_feature 1600548..1601000 FT /note="HMMPfam hit to PF01832, Mannosyl-glycoprotein FT endo-beta-N-acetylglucosamidase, score 1.1e-39" FT CDS 1601100..1602746 FT /transl_table=11 FT /gene="flgK" FT /gene_synonym="flaS" FT /gene_synonym="flaW" FT /locus_tag="BPP1494" FT /product="flagellar hook-associated protein 1" FT /note="ortholog of Bordetella pertussis (BX470248) BP1382" FT /protein_id="CAE36796.1" FT /translation="MNLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGA FT GETGQGFFGRGVQVDTVTRQYDSFLYRQLVGAQGSSAQLSTHLAQVSQVNNLFGDRTVG FT ITPALAGLFTSTNAAATKPADPAVRADMIGKANSLVTQINTAYQELENQRNGLNTQIST FT TVEQVNSYLERINDLNKQIVIARGKDGHAPNDLLDQRDQAVSELNQLTGIRFYEQGDTF FT NITLQSGQTLLSGTTVYPLQAVPSASDPKRLAVAYTLPSGPGTTIQVEMNDSEVTGGQL FT GGLLSFRSQSLDAVQDQLGQLAIGLAMAFNAQHREGYDLDGQPGGDMFGLQAPAAIRNS FT GNTSTGEWQSAYTDADAIRASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGL FT TLTGSGTPAAGDAWTLQPARDAARDLKQLISDPSKLALADSALGTTNGNNGLKLAELQT FT AKVLGNGSMSLNEMFSQLVNNVGVQTQQVSTANTAQANLVKQQATAHLSVSGVNLNEEY FT VNLTIFQEQYQASAKILDVASTVFDTLLGLR" FT CDS 1602780..1604312 FT /transl_table=11 FT /gene="flgL" FT /gene_synonym="flaT" FT /gene_synonym="flaU" FT /locus_tag="BPP1495" FT /product="flagellar hook-associated protein 3" FT /note="ortholog of Bordetella pertussis (BX470248) BP1383" FT /protein_id="CAE36797.1" FT /translation="MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLA FT AALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTLQSVVKNMQEMLKRVVEAGNGTMSD FT ADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDAATGKVTYNGDLGQ FT RGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNAGTGQYSAVSFDGPRAGNYV FT GRDFRIEFTRDAVTDELQYSVLSDPPVVPPEQPLPANMPYSEGSVIDMNGVSIKLSGQP FT EAGDVFTVETPKSWKMGVQGDAANTGSATLTPVSLPDGLTGKNLSVAFLDDGAGGLLYS FT VTSTPPDPSLPANVPVKPGDVIDIGGLKVKVDGQPAAGDTYAVTTPKSANVDVFDTLND FT LIGALDTPISGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGA FT QKGLSYVKQLSDLEDVNIYQATSDLLLRQVALQAASLALQRIQGNSLFSMGR" FT misc_feature 1602858..1603280 FT /note="HMMPfam hit to PF00669, Bacterial flagellin FT N-terminus, score 3.7e-09" FT CDS 1604340..1606007 FT /transl_table=11 FT /gene="tsr" FT /gene_synonym="cheD" FT /locus_tag="BPP1496" FT /product="methyl-accepting chemotaxis protein I" FT /note="ortholog of Bordetella pertussis (BX470248) BP1384" FT /protein_id="CAE36798.1" FT /translation="MARAPLEERVFDGKRINMWSNLKVRTCITLVLGLFLVAMLVSNAM FT AWLGMSSSNDKLERVNNAYSNQAVPAYEAYVMLLRARLNMVSSMMDLQEGRLKESADTL FT AHAQRQAGEARERFEAFLAVAKASSGADRVGAVETAFHAYLEVAARQMEAMQNQKLGEF FT VQLNPSAQRLNTAFDTAASAYLDRIDTDTDALVDDARAEHLRANTVTLVLIVLALALCA FT GCGVFIGRAVLRPLKEAGQHFDRIAAGDLTARVDVRSTNEIGQLFAALKRMQESLTRTV FT AAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQA FT NQLAASASDVAERGGSAVSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAVE FT AARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQE FT IVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQE FT QAQRLAEAVAVFKINTGEVIEVPAHQLSGYAAPLVAQS" FT misc_feature 1604340..1604477 FT /note="Signal peptide predicted for BPP1496 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.782) with cleavage site FT probability 0.390 between residues 46 and 47" FT misc_feature join(1604421..1604489,1604970..1605038) FT /note="2 probable transmembrane helices predicted for FT BPP1496 by TMHMM2.0 at aa 28-50 and 211-233" FT misc_feature 1604967..1605176 FT /note="HMMPfam hit to PF00672, HAMP domain, score 1.7e-14" FT misc_feature 1605237..1605935 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain, score 1.1e-110" FT CDS join(1606186..1607601,1607605..1607784) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1497" FT /product="methyl-accepting chemotaxis protein (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1386" FT /db_xref="PSEUDO:CAE36799.1" FT misc_feature 1606423..1606548 FT /note="HMMPfam hit to PF00785, PAC motif, score 6.4e-06" FT misc_feature 1606801..1607010 FT /note="HMMPfam hit to PF00672, HAMP domain, score 9.7e-06" FT misc_feature join(1607071..1607601,1607605..1607769) FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain, score 1.1e-81" FT variation 1607602..1607604 FT /note="In-frame TAG stop codon in parapertussis; TCG in FT pertussis" FT CDS complement(join(1607933..1608091,1608097..1608726)) FT /pseudo FT /transl_table=11 FT /gene="fliR" FT /gene_synonym="flaP" FT /locus_tag="BPP1498" FT /product="flagellar biosynthetic protein FliR (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1389" FT /db_xref="PSEUDO:CAE36800.1" FT misc_feature complement(join(1607963..1608091,1608097..1608708)) FT /note="HMMPfam hit to PF01311, Bacterial export proteins, FT family 1, score 2e-77" FT misc_feature complement(join(1608025..1608090,1608127..1608192, FT 1608274..1608339,1608439..1608504,1608535..1608600, FT 1608628..1608693)) FT /note="6 probable transmembrane helices predicted for FT BPP1498 by TMHMM2.0 at aa 11-33, 42-64, 74-96, 129-151, FT 178-200 and 212-234" FT variation complement(1608093..1608107) FT /note="(GCGCC)3 in parapertussis; (GCGCC)2 in pertussis" FT CDS complement(1608749..1609018) FT /transl_table=11 FT /gene="fliQ" FT /gene_synonym="flaQ" FT /locus_tag="BPP1499" FT /product="flagellar biosynthetic protein FliQ" FT /note="ortholog of Bordetella pertussis (BX470248) BP1390" FT /protein_id="CAE36801.1" FT /translation="MTAETVMSMTYQALKVALALAGPLLLVTLIVGLVISIFQAATQIN FT EMTLSFIPKLLAMCGTLVLLGPWLLGLLTDYIRQLIGQIPMLVS" FT misc_feature complement(1608782..1609009) FT /note="HMMPfam hit to PF01313, Bacterial export proteins, FT family 3, score 1.9e-36" FT misc_feature complement(join(1608803..1608868,1608914..1608979)) FT /note="2 probable transmembrane helices predicted for FT BPP1499 by TMHMM2.0 at aa 13-35 and 50-72" FT misc_feature complement(1608899..1609018) FT /note="Signal peptide predicted for BPP1499 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.889) with cleavage site FT probability 0.864 between residues 40 and 41" FT CDS complement(1609035..1609835) FT /transl_table=11 FT /gene="fliP" FT /gene_synonym="flaR" FT /locus_tag="BPP1500" FT /product="flagellar biosynthetic protein FliP" FT /note="ortholog of Bordetella pertussis (BX470248) BP1391" FT /protein_id="CAE36802.1" FT /translation="MPVMSISFRFSDTRPRAPWWPAMAAVAVAAAALWPSGALAQATLP FT ALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGLLRSAMGTAMS FT PPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAGSPLHNFMLHQT FT RENDLTLFANLANLPAMEDPSQVPMRILIPAFITSELKTAFQIGFTIFIPFLIIDLVVA FT SVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSFYQ" FT misc_feature complement(1609053..1609634) FT /note="HMMPfam hit to PF00813, FliP family, score 7.9e-108" FT misc_feature complement(join(1609065..1609130,1609152..1609217, FT 1609458..1609514,1609551..1609616,1609710..1609775)) FT /note="5 probable transmembrane helices predicted for FT BPP1500 by TMHMM2.0 at aa 20-42, 73-95, 107-126, 206-228 FT and 235-257" FT misc_feature complement(1609077..1609115) FT /note="PS01061 Flagella transport protein fliP family FT signature 2." FT misc_feature complement(1609212..1609259) FT /note="PS01060 Flagella transport protein fliP family FT signature 1." FT misc_feature complement(1609716..1609835) FT /note="Signal peptide predicted for BPP1500 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.988 between residues 40 and 41" FT CDS complement(1609838..1610179) FT /transl_table=11 FT /gene="fliO" FT /gene_synonym="flbD" FT /gene_synonym="flaP" FT /locus_tag="BPP1501" FT /product="flagellar protein FliO" FT /note="ortholog of Bordetella pertussis (BX470248) BP1392" FT /protein_id="CAE36803.1" FT /translation="MTESAVLRVVIGLALVIAAILVSAWLARRSGLIQRHGGALLRQVG FT GMSLGPRQRVVVLEIEGTWLVLGVTPNQLTTLHTLPAGQLPDPSPAAAGTFAAKLGQAL FT QRGHRVDRP" FT misc_feature complement(1610099..1610164) FT /note="1 probable transmembrane helix predicted for BPP1501 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(1610111..1610179) FT /note="Signal peptide predicted for BPP1501 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.646) with cleavage site FT probability 0.347 between residues 23 and 24" FT CDS complement(join(1610190..1610522,1610526..1610708)) FT /pseudo FT /transl_table=11 FT /gene="fliN" FT /gene_synonym="motD" FT /locus_tag="BPP1502" FT /product="flagellar motor switch protein FliN (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1393" FT /db_xref="PSEUDO:CAE36804.1" FT misc_feature complement(1610223..1610453) FT /note="HMMPfam hit to PF01052, Surface presentation of FT antigens (SPOA) protein, score 5.5e-34" FT CDS complement(1610701..1611711) FT /transl_table=11 FT /gene="fliM" FT /gene_synonym="fla AII" FT /gene_synonym="fla QII" FT /gene_synonym="CheC2" FT /locus_tag="BPP1503" FT /product="flagellar motor switch protein FliM" FT /note="ortholog of Bordetella pertussis (BX470248) BP1394" FT /protein_id="CAE36805.1" FT /translation="MAYEAFLSQDEVDALLAGVTGESDEKQPAGDEAGAPRAYDLSSPE FT RVVRRRMQTLELINERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVPSNLN FT MIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTL FT ESYGKSWDPVYPIEFEYVRSEMHTKFASITGNNEVVVVSPFHIEFGATGGDLNICLPYS FT MIEPVRDLLTRPLQDTALEEVDQRWAQQLQSQVRSADIDLVAEFGHIPSSIGELMRMKT FT GDVLPIAVPETVTAHVDGVPLMEYGYGVFNGRYALRVQNLINYDDTDSNEAPDHD" FT misc_feature complement(1610737..1610961) FT /note="HMMPfam hit to PF01052, Surface presentation of FT antigens (SPOA) protein, score 0.0037" FT misc_feature complement(1611019..1611597) FT /note="HMMPfam hit to PF02154, Flagellar motor switch FT protein FliM, score 5.8e-95" FT CDS complement(1611714..1612286) FT /transl_table=11 FT /gene="fliL" FT /gene_synonym="fla AI" FT /gene_synonym="fla QI" FT /gene_synonym="cheC1" FT /locus_tag="BPP1504" FT /product="flagellar protein FliL" FT /note="ortholog of Bordetella pertussis (BX470248) BP1395" FT /protein_id="CAE36806.1" FT /translation="MATTKTSTMPPRTTLPLRPGGAGRLLRPLLMLLVLALVVAASVAG FT TWYFMKRMQPPVAVPVQLGVGQPQATPMQFVAPPATPPVVPAPIFIPLEAFTVTLQNAD FT SERILHVGITLRVSDEQTRQRIEKYMPEVRSRILMVLSSQSPQAVQTLQGKTEMAHAIT FT EAVKRPFSPLPDGQYVTDALFTAFVVQ" FT misc_feature complement(1612137..1612202) FT /note="1 probable transmembrane helix predicted for BPP1504 FT by TMHMM2.0 at aa 28-50" FT misc_feature complement(1612155..1612286) FT /note="Signal peptide predicted for BPP1504 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.980) with cleavage site FT probability 0.665 between residues 44 and 45" FT CDS complement(1612428..1613744) FT /transl_table=11 FT /gene="fliK" FT /gene_synonym="flaE" FT /gene_synonym="flaR" FT /locus_tag="BPP1505" FT /product="flagellar hook-length control protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1398" FT /protein_id="CAE36807.1" FT /translation="MSRNRTAAMTTATLPIPALTPAPGPAAQGGPAAAGKGPSFSQVLA FT RQQGGKPGEAGTPAAPGAQAGAPAQGPATQNPAGAGKPGKPGDTAALPVDGQQEPAAET FT AADAATLAALAAQTAPAPALPLQALEIAAEAAAVNAQVAAATQAAGAAARQPAHAALLA FT GQPAAPAAAGAPPADTAPAMPPALPQAAQPAVAAQAAVAASAPNAPAAETAATPPAAPS FT LPHPLPSTGGTPQDGGEAAEPPATAPAQPQPLAAAEHGAALHAAAQAHIAARQAVGNPA FT PASLPAAAQPLGLEVAAPVGSSQWGQDLGRQLVTISHDARQGHHTAELRLDPPDLGPLR FT VSINLHEGVASAAFVSVHAAVRQAVEAALPQLQQALAQAGISLGQTSVGDQSAQQGFAE FT QQGRGAGASGGSAAGADSETVVVAATPARNADALVDTFA" FT misc_feature complement(1613658..1613744) FT /note="Signal peptide predicted for BPP1505 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.341 between residues 29 and 30" FT CDS complement(1613750..1614184) FT /transl_table=11 FT /gene="fliJ" FT /gene_synonym="flaO" FT /gene_synonym="flaS" FT /locus_tag="BPP1506" FT /product="flagellar protein FliJ" FT /note="ortholog of Bordetella pertussis (BX470248) BP1399" FT /protein_id="CAE36808.1" FT /translation="MPSQLPLDMLIGLAKDSTDEAARELGRLSAERNNAEQQFNMLQDY FT RQDYLQRMQSGMSAADCHNYQRFIATLDDAIGQQRHVLHRAEAHLNDGRLNWQQQKRKL FT NSFDTLAQRESRTQALLEARREQRVNDEYSARLVRRQAGF" FT misc_feature complement(1613756..1614184) FT /note="HMMPfam hit to PF02050, Flagellar FliJ protein, FT score 4.5e-10" FT CDS complement(1614177..1615652) FT /transl_table=11 FT /gene="fliI" FT /gene_synonym="fla AIII" FT /gene_synonym="flaC" FT /locus_tag="BPP1507" FT /product="flagellum-specific ATP synthase FliI" FT /EC_number="3.6.3.14" FT /note="ortholog of Bordetella pertussis (BX470248) BP1400" FT /protein_id="CAE36809.1" FT /translation="MNPPALPLPADTAAVPVADRWQTQLQIGSIRAASTEPWLVSGRIT FT RAAGLVLHATGLRLPVGAACRIELARGHDHWADAEVVGFDGHTLYLMPQSDISGLPPGA FT RVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLPVGNAMLGRVVDGAGRPLDGLGPLAG FT AEQAPLTALPINPLSRAPIDSVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMM FT ARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLARSVVVAAPADVSPLLRLQGASYAT FT RLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPALVERTG FT MGAPSPNGKAGSITAFYTVLAEGDDQQDPIADSARAILDGHVVLSRHLAEAGHYPAIDI FT EASISRAMTSLITTEQFQQVRRFKQILSRYQRNRDLISVGAYVAGADPQLDDAIARYPR FT LEAYLQQNIGDSVDYGTAIDQLQRSLETREAYA" FT misc_feature complement(1614423..1615250) FT /note="HMMPfam hit to PF00006, ATP synthase alpha/beta FT family, nucleotide-binding domain, score 1.3e-131" FT misc_feature complement(1614441..1614470) FT /note="PS00152 ATP synthase alpha and beta subunits FT signature." FT misc_feature complement(1615005..1615028) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1615649..1616404) FT /transl_table=11 FT /gene="fliH" FT /gene_synonym="fla BIII" FT /gene_synonym="fla AII.3" FT /locus_tag="BPP1508" FT /product="flagellar assembly protein FliH" FT /note="ortholog of Bordetella pertussis (BX470248) BP1401" FT /protein_id="CAE36810.1" FT /translation="MSEALAREPAALPRSAAWRRWQMLSFDEPAEAETPEPAALEPEPE FT PAPDPEELLREWRATAERAGHAAGHQAGQEQGQREGYAAGHAQGLAAGRAEGHAEGLAQ FT GREEARQQAERLHALAQACAASVARLEDNMGQSLLTLALDIAGQVLRTALAEHPETMVA FT AVREVLHINPATGAAMRLWVHPDDLELVRTHLADELNEANWRLQADESITRGGCRTETA FT YGDVDATLQARWRRVAASLGRSAAWEETA" FT misc_feature complement(1615691..1616404) FT /note="HMMPfam hit to PF02108, Flagellar assembly protein FT FliH, score 9.2e-11" FT CDS complement(1616397..1617407) FT /transl_table=11 FT /gene="fliG" FT /gene_synonym="fla BII" FT /gene_synonym="fla AII.2" FT /locus_tag="BPP1509" FT /product="flagellar motor switch protein FliG" FT /note="ortholog of Bordetella pertussis (BX470248) BP1402" FT /protein_id="CAE36811.1" FT /translation="MKNDGKPLDGMTRSAVLMMSLGEDAAAEVFKYLSAREVQQVGAAM FT ASLKQVTRGDVAVVLEEFRQEADQFMAVTLGSDDYIRTVLTKALGSDRAAGLIEDILEA FT GEGGSGIDALNWLDPHTVAELIGDEHPQIIATILVHLERDRAASVLAMLSERMRNDVML FT RIATFGGVQPAALSELTDVLNSVLAGQGAKRSKMGGVRTAAEILNMMNSSQEEAVVESL FT RERDSDLAQKIIDEMFVFDNLLDVEDRAVQLILKEIDNDTLMVALKGAGDELRNKFLRN FT MSSRAAEMLREDLEAQGPIRMSKVEGEQKKILQIARRLAESGQIVLGTQGDDAYV" FT misc_feature complement(1616424..1616753) FT /note="HMMPfam hit to PF01706, FliG C-terminal domain, FT score 3.4e-52" FT CDS complement(join(1617397..1618212,1618216..1619073)) FT /pseudo FT /transl_table=11 FT /gene="fliF" FT /gene_synonym="fla BI" FT /gene_synonym="fla AII.1" FT /locus_tag="BPP1510" FT /product="flagellar M-ring protein FliF (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1403" FT /db_xref="PSEUDO:CAE36812.1" FT misc_feature complement(join(1617622..1617687,1618933..1618989)) FT /note="2 probable transmembrane helices predicted for FT BPP1510 by TMHMM2.0 at aa 28-47 and 462-484" FT variation complement(1618213..1618215) FT /note="In-frame TAG stop codon in parapertussis; CAG in FT pertussis" FT misc_feature complement(1618387..1619013) FT /note="HMMPfam hit to PF01514, Secretory protein of FT YscJ/FliF family, score 3.3e-77" FT misc_feature complement(1618942..1619073) FT /note="Signal peptide predicted for BPP1510 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.814) with cleavage site FT probability 0.509 between residues 44 and 45" FT CDS 1619386..1619718 FT /transl_table=11 FT /gene="fliE" FT /gene_synonym="flaN" FT /gene_synonym="fla AI" FT /locus_tag="BPP1511" FT /product="flagellar hook-basal body complex protein FliE" FT /note="ortholog of Bordetella pertussis (BX470248) BP1404" FT /protein_id="CAE36813.1" FT /translation="MAVSGLSGIESMLSQMRAVVRAAQSGGATEAELAPGPSGFAAELQ FT RSIRRVSQAQNAASDQAKAFELGAPGISLNDVMIDLQKASLGFQTSVQVRNRLVAAYKE FT ISSMAV" FT misc_feature 1619404..1619712 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02049, Flagellar hook-basal body FT complex protein FliE, score 6.7e-20" FT CDS complement(1619732..1620127) FT /transl_table=11 FT /locus_tag="BPP1512" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1405" FT /protein_id="CAE36814.1" FT /translation="MTAQDQIVVLTQSDQIRSTLQELRHPDCQIVISGIDQRPWPVRIL FT GPDAKDGYFFWRPLDLACPDSVMLARMADEDEPPLAFHAQTADGARIHFCVDSPVTLRF FT GDGSIAVLSLFPSAVRHTCARPPQAPA" FT CDS complement(1620137..1620451) FT /transl_table=11 FT /locus_tag="BPP1513" FT /product="conserved hypothetical protein" FT /product="putative flagellar protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1406" FT /protein_id="CAE36815.1" FT /translation="MNTPAPPAADDASRPVAVALSYDGGEAAPRVVAKGYGQLADTIVR FT TAREHGLHVHESRELVGLLMQVDLDAHIPPQLYTAVAELLAWLYRLEARELPEVLAPQA FT " FT CDS complement(1620448..1621719) FT /transl_table=11 FT /locus_tag="BPP1514" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1407" FT /protein_id="CAE36816.1" FT /translation="MSVGPPALGSILVQRLDAVLGTTMSAQSNLVSGARPDAVAQPGEA FT ARPGASQTATRDPRQAVQTGGERGARQGAAGVDAKTAAALALAARGLQTSTGTTASAPT FT TLGQTARTILALLAQYPGQAPAVSARAPLWTPPAQDGASPPAGGQPAAAAPNAPAQASA FT AAGGAASTPSRPEAAQAGAASARTPAQTPPATLAALAGRAVLPAAPALAQALRQTLQAS FT GLFYESHLSDLAFGKRSVQQLQAEPQARLPAAGAEPAATPRAPENATPARALPAAEAAP FT PGQPATHTPGAPVPGIHQDATLLVRQQLDVLANQMLAWQGQAWPGTPMEWEVAREHGDD FT AAGQPGTHWATRLKLNLPRLGTVEARLNLAANQLVLHVVAPDSAAEIGAAADALRQQLS FT AAGLTLTNLSVDAIGAPGFDLPEA" FT CDS complement(1621716..1622096) FT /transl_table=11 FT /gene="fliT" FT /locus_tag="BPP1515" FT /product="flagellar protein FliT" FT /note="ortholog of Bordetella pertussis (BX470248) BP1408" FT /protein_id="CAE36817.1" FT /translation="MSSRPQREKSMTALTQHAPVLEIYQDIANLTSRMLAAANASNWDL FT VLNHGQEYVCLVERLRELEPGEPLDEAARGMKFDLLVRILENDAAVRDLALPQLARLSD FT LLGRMKRQQSLLATYSGKANGT" FT CDS complement(1622114..1622542) FT /transl_table=11 FT /gene="fliS" FT /locus_tag="BPP1516" FT /product="flagellar protein FliS" FT /note="ortholog of Bordetella pertussis (BX470248) BP1409" FT /protein_id="CAE36818.1" FT /translation="MTYAARRPTGSYSVKSYSYIGLETQVMSATPERLITLLYAGARAA FT IAQARLHLEAGRIVERGQAIGKAIRIVDEGLKLGLNQDAGGEVAANLARLYDYITRTLL FT TANLKADKEQLDIADRLLADLSEAWQASVDHPAPAVPA" FT misc_feature complement(1622135..1622509) FT /note="HMMPfam hit to PF02561, Flagellar protein FliS, FT score 9.3e-23" FT CDS complement(1622550..1623923) FT /transl_table=11 FT /gene="fliD" FT /gene_synonym="flbC" FT /gene_synonym="flaV" FT /locus_tag="BPP1517" FT /product="flagellar hook-associated protein 2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1410" FT /protein_id="CAE36819.1" FT /translation="MATISSLGSSGLELEGILEKLQAAEEKKLTLITARQASYETRISA FT YSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSGDGLSVKTAAGAVPGQYTVNIDKLATA FT QNLQSGELDSRTDKHGTGGSIEIVQKDGTTTTVTLGEDTSLNGIVKAINGTDGLDVRAT FT VISDGNGKHYLMLNNKTEGTEAAVTRITVSGNQEVADILDFDAANAGASNLTVQLAAQK FT AELTINGIPVVSDTNTVETAIDGLTLTLTKQTAAPLTVTVSSDPSVAATAVNDFVKAYN FT GLQTTIADLTAFDVKAEKQSALTGDGTTRNIQSAIAAALRVATGEGTLRTLSQLGITTD FT PKTGSLKTDTEKLEAALRDNPADVARIFSGPFGLGEKVKLATEQILGDEGSIKIRQEGL FT EETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQFAALSGTKK" FT misc_feature complement(1622604..1623899) FT /note="HMMPfam hit to PF02465, Flagellar hook-associated FT protein 2, score 1.2e-58" FT CDS complement(1624064..1624426) FT /transl_table=11 FT /locus_tag="BPP1518" FT /product="putative flagellar protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1411" FT /protein_id="CAE36820.1" FT /translation="MAVSPINAAAPALVSAAPAPVPAQPAAAAAANGGGAQSATQDQYG FT APKLPMDRALEEINAQLKAWSTQLQFEIDPDVHQVVVSIVDAETGDVLRTIPSEAVIRI FT AKMIVKMQGNAVETTA" FT misc_feature complement(1624070..1624405) FT /note="HMMPfam hit to PF03646, FlaG protein, score 0.00021" FT misc_feature complement(1624343..1624426) FT /note="Signal peptide predicted for BPP1518 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.534 between residues 28 and 29" FT CDS 1624916..1626223 FT /transl_table=11 FT /gene="folC" FT /gene_synonym="dedC" FT /locus_tag="BPP1519" FT /product="FolC bifunctional protein [includes: FT folylpolyglutamate synthase and dihydrofolate synthase]" FT /EC_number="6.3.2.17" FT /note="ortholog of Bordetella pertussis (BX470248) BP1412" FT /protein_id="CAE36821.1" FT /translation="MSTSRPDASADLPAWLQYLESIHAKAIDLGLDRVRQVAGRLDLSL FT DGVKFMVGGTNGKGSTCAMLESILLAAGYRVGLYTSPHLIDFNERARINGEIASDAALV FT QQFEAVEAARGDISLTYFEFTTLAILRLFAQSRLDAVVLEVGLGGRLDAVNIVDADCSI FT ITSIDLDHTDWLGDTREKIGFEKAHIYRAGRPAICADPVPPQSLLDHVQAIGADLWLLG FT RDYNYSGDRQQWAYGGRAQRRNALAYPALRGANQLLNAAAALAALEAVRDRLPVPQQAV FT RVGLLQASLPGRFQILPGQPTVILDVAHNPHAAAVLAQNLDNMGFHPYTHAVFGMLADK FT NVDGVIARLGSRVDHWYCAGLPGPRGLDGQALADHVRQVLPEAEGAAETPTVQACADPA FT AAYAAAREKAGEGDRIIVFGSFLTVASVLQALGRKI" FT misc_feature 1624955..1625764 FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain, score 1.9e-14" FT misc_feature 1625063..1625134 FT /note="PS01011 Folylpolyglutamate synthase signature 1." FT misc_feature 1625783..1626037 FT /note="HMMPfam hit to PF02875, Mur ligase family, glutamate FT ligase domain, score 0.0015" FT CDS 1626284..1627114 FT /transl_table=11 FT /locus_tag="BPP1520" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1413" FT /protein_id="CAE36822.1" FT /translation="MGLFTSKDSASETQSSRPRPSVSSEAQAAELRARARRRLAGAVAL FT VLAAVIVLPMILDSEPVPVDSDIPIRVPDRNSAFQPTVNDPQAAAPQPEQPAPQAPAGT FT PEAGAPQPPALASAPPQTPPPGQTPAQPQTPPAAQPPATPPQQAATPPAAPKPEAKPEP FT KPAKPAAPARSDDGARAIALLEGRSPPPAQPKPAANGNFVLQVASYTTQADAQARRGKL FT HQAGVTNAFVEQASINGKQQYRLRVGPFPSREAAQAAQARLRTLGYDNGFIAAQ" FT misc_feature 1626398..1626454 FT /note="1 probable transmembrane helix predicted for BPP1520 FT by TMHMM2.0 at aa 39-57" FT CDS 1627111..1627599 FT /transl_table=11 FT /gene="cvpA" FT /gene_synonym="dedE" FT /locus_tag="BPP1521" FT /product="colicin V production protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1414" FT /protein_id="CAE36823.1" FT /translation="MTGFDFVVLTILAVSAVLGLVRGLLKEILSLLAYLLAFVAAIWWG FT PTVYVWLEPYIETALLRMGIAYAVVFIIVLLAVGLVNMTLAALIRTTGLTPADHGLGAM FT FGLARGLVLVLVLVALAGFTPLPQEDWWRDAMFSHSATEAVRQVKSWLPPSLATWLPY" FT misc_feature 1627117..1627572 FT /note="HMMPfam hit to PF02674, Colicin V production FT protein, score 4.4e-30" FT misc_feature join(1627126..1627185,1627198..1627266,1627309..1627377, FT 1627411..1627479) FT /note="4 probable transmembrane helices predicted for FT BPP1521 by TMHMM2.0 at aa 6-25, 30-52, 67-89 and 101-123" FT CDS 1627641..1629161 FT /transl_table=11 FT /gene="purF" FT /locus_tag="BPP1522" FT /product="amidophosphoribosyltransferase" FT /EC_number="2.4.2.14" FT /note="ortholog of Bordetella pertussis (BX470248) BP1415" FT /protein_id="CAE36824.1" FT /translation="MCGIVGVIGRGPVNQLLYDSLLLLQHRGQDAAGIATLQGNHFNMY FT KAHGLVRDVFRTRNMRALPGTSGVGQVRYPTAGSSASEEEAQPFYVNAPFGIMFAHNGN FT LTNWRELRESLYRADRRHINTNSDSEVLLNVLAHELQSAASGVSLDDDTIFRAVSAVHQ FT RVKGAYAVVAQISGYGMLAFRDPHGIRPLCIGRQETEEGVEWMAASESVALEGSGFAFV FT RDVEPGEAIFVDLDGRMTSRQCADNAQLVPCIFEYVYFARPDSLIDGVSVYDARLRMGE FT YLADKVARSMRLGDIDVVMPIPDSSRPAAMQLAHRLGLDYREGLIKNRYVGRTFIMPGQ FT AVRRKSVRQKLNAIGMEFKGKNVLLVDDSIVRGTTSREIVDMARAAGANKVYFASAAPP FT VRFPNVYGIDMPTQKELIATGRTDDEIARTIGADALIYQDLQDMQQAVRDINPRLSRFE FT ASCFDGEYVTGDITAEYLARLGQSRDSSAGDEEAGGLQFNMGYAANDA" FT misc_feature 1627641..1627658 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 1627644..1628225 FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II, score 4.9e-65" FT misc_feature 1628409..1628900 FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain, score 3.9e-12" FT misc_feature 1628727..1628765 FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT CDS complement(1629205..1629681) FT /transl_table=11 FT /gene="dsbB" FT /gene_synonym="roxB" FT /locus_tag="BPP1523" FT /product="disulfide bond formation protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP1416" FT /protein_id="CAE36825.1" FT /translation="MTRYRERLLFLIAILCFGAVGLALLSQHVFDMPPCAWCVLQRLIY FT LCIGVVALAGALAGAIAARLAAMLAALLAICGIVAAWYQYSVAAKMLSCDQTFADRFMS FT ATGLDGALPWLFGIYATCMDATVAVLGIEYAIWSLALFVIVLALALPAALRRNA" FT misc_feature complement(join(1629223..1629279,1629286..1629351, FT 1629418..1629483,1629499..1629564,1629595..1629660)) FT /note="5 probable transmembrane helices predicted for FT BPP1523 by TMHMM2.0 at aa 7-29, 39-61, 66-88, 110-132 and FT 134-153" FT misc_feature complement(1629613..1629681) FT /note="Signal peptide predicted for BPP1523 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.573 between residues 23 and 24" FT CDS complement(1629732..1630445) FT /transl_table=11 FT /gene="marC" FT /locus_tag="BPP1524" FT /product="putative multiple antibiotic resistance protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1416A" FT /protein_id="CAE36826.1" FT /translation="MPYNEYLLVFGRSFFFALATLLPFLNPPAITPIFWTLTEGASKQT FT LAQLSKRVAINVALMMIGAMIAGNVVLSFFGISLAIVRVGGGMLVIYSAWRLVNSPDAD FT TSRHAQMAESFTPEMAQARAFYPLTFPISCGPGTIAACITVGASLRDENHMLSLARLAG FT SLPGVALVAFTLFICLRFAAQMLHRLGDNGTAVFMRLSAFIMLCLGVQIFWSDASELLL FT DVMRQIMQPIAAPPA" FT misc_feature complement(1629783..1630415) FT /note="HMMPfam hit to PF01914, MarC family integral FT membrane protein, score 1e-19" FT misc_feature complement(join(1629801..1629857,1629897..1629962, FT 1630008..1630073,1630152..1630208,1630221..1630286, FT 1630335..1630400)) FT /note="6 probable transmembrane helices predicted for FT BPP1524 by TMHMM2.0 at aa 15-37, 53-75, 79-98, 124-146, FT 161-183 and 196-215" FT CDS complement(1630484..1633081) FT /transl_table=11 FT /gene="glnD" FT /locus_tag="BPP1525" FT /product="[protein-PII] uridylyltransferase" FT /EC_number="2.7.7.59" FT /note="ortholog of Bordetella pertussis (BX470248) BP1417" FT /protein_id="CAE36827.1" FT /translation="MPHVDLNPLKQRMQAARAAAVAQFRQHPRPDMLLTELRRIVDQAL FT RELVKLCPLPAGATLAAVGGYGRGELYPHSDVDLLILLPQPPSAADARAVEALVAALWD FT LGLEPGHSVRTLEDCEREARGDITVETALLESRWLAGSRTLMKRLDSAMQARLDAAVFF FT QAKRVEMQQRHARYQDTPYALEPNCKESPGGLRDLQVILWMARAAGFGHSWREVAQAGL FT LTSSEARDLRRAEQAFKRLRIELHLLTGRREDRVLFDLQPGLAAVYGIASTATRRASEL FT LMQRYYWAARLVTQLNVILVQNIEERLFPRPDSDARLIDDDFRNLRERLDIVREDGFER FT NPTLLLRAFLVMQQHPELIGMSARTLRAIWHSRHRIDAQFRRNPVNRKLFLQILQQPRG FT IVHELRRMTMLNILPRYLPVFRRIVGQMQHDLFHVYTVDQHTLAVVRNLRRFTMPEHAQ FT EYPLASQLIAGLDRHWLLYVAALFHDIAKGRGGDHSELGAREVRRFAQDHGLDPADAEL FT VEFLVRHHLLMSAVAQKRDLSDPQVVRDFAAQVGDERRLAALYLLTVADIRGTSPRVWN FT AWKGKLLEDLFRLALAALGGAHADAHTVLTERKDEAARLTRLAGLRDDAREAFWNQLDI FT AYFLRHDASEIAWHTRHLYYQVAPDEPVVRVRPTEHGEGLQVMVYTRDAPDLFVTTCGY FT FDAKSLSVQDARVHTTRHGWALDSFIVLAPEGFADLRAQATLVEHELAERLRDPHAARH FT AHAPRRLPHSHARRSRVFPVMPQAELSPDERSQSWRLSVTATDRPGLLYALARVFAEHG FT VDLIMAKIMTLGERVEDVFIVSGSALERPRSQMQFERAILDALAGDEPRQQAA" FT misc_feature complement(1630511..1630720) FT /note="HMMPfam hit to PF01842, ACT domain, score 0.00012" FT misc_feature complement(1630847..1631059) FT /note="HMMPfam hit to PF01842, ACT domain, score 18" FT misc_feature complement(1631369..1631773) FT /note="HMMPfam hit to PF01966, HD domain, score 3.7e-10" FT misc_feature complement(1632680..1632973) FT /note="HMMPfam hit to PF01909, Nucleotidyltransferase FT domain, score 3.6e-08" FT CDS complement(1633111..1633932) FT /transl_table=11 FT /gene="map" FT /locus_tag="BPP1526" FT /product="methionine aminopeptidase" FT /EC_number="3.4.11.18" FT /note="ortholog of Bordetella pertussis (BX470248) BP1418" FT /protein_id="CAE36828.1" FT /translation="MGIVTDPADLAKMRAACQDAAKILDFITPYVKPGVTTGELDKLCL FT AYLTDELKVKSATIGYAPPGYPPFTGAICTSVNHQVCHGIPGDKVLKNGDSLNIDVTII FT KDGWFGDTSRMYHVGEPSILSRRLTDITYDCMWKGIEQVRNGATLGDIGHAIQKYAEAQ FT GFSVVREFCGHGIGQRFHEDPQVLHYGKPGTGVKLVTGMLFTVEPMINAGRREIRQLAD FT GWTVVTRDHSLSAQWEHTVLVTDTGYEVLTVSPGMPAPPAFVTRPVEIPAL" FT misc_feature complement(1633186..1633926) FT /note="HMMPfam hit to PF00557, metallopeptidase family M24, FT score 2.5e-73" FT misc_feature complement(1633366..1633422) FT /note="PS00680 Methionine aminopeptidase subfamily 1 FT signature." FT CDS 1634654..1635403 FT /transl_table=11 FT /gene="rpsB" FT /locus_tag="BPP1527" FT /product="30S ribosomal protein S2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1419" FT /protein_id="CAE36829.1" FT /translation="MSLMREMLEAGVHFGHQTRYWNPKMAPYIFGHRNKIHIINLEQTV FT AKYQEASKFVKQLVARGGNILFVGTKRAARELVATEAARCGMPYVDARWLGGMLTNFKT FT VKSSIKRLKDMEAMVADGGFERMTKKEGLLFQRELDKLNKSIGGIKDMNGLPDALFVID FT VGYHKIAVAEAKVLGIPVVAVVDTNHSPDGIDHVIPGNDDSARAIALYAKGMADAVLEG FT REQNINGLVEEIGEGQEEFVEVQDNQA" FT misc_feature 1634663..1634698 FT /note="PS00962 Ribosomal protein S2 signature 1." FT misc_feature 1634672..1635322 FT /note="HMMPfam hit to PF00318, Ribosomal protein S2, score FT 3.5e-100" FT CDS 1635536..1636465 FT /transl_table=11 FT /gene="tsf" FT /locus_tag="BPP1528" FT /product="elongation factor Ts" FT /note="ortholog of Bordetella pertussis (BX470248) BP1420" FT /protein_id="CAE36830.1" FT /translation="MSRFMLAGPCLSEFGANMAEITAALVKELREKTDAPMMECKKALT FT EAEGDLARAEEILRVKLGNKASKAAARVTAEGLIGLYIAADGKQGAVIEVNCETDFVAK FT NTDFIDFINKLAELVATQNPGDVAALSALPFGEGTVETTRTALVGKIGENISVRRFERI FT QTPNSLASYVHGGKIGVLVEFSGAEEVGKDLAMHIAATKPKALNADGVNAEDIAAERSV FT AEQKAAESGKPAEIVAKMVEGSVQKFLKEVTLLSQPFVKNDKQTIEQMLKEKGASITKF FT VLFVVGEGIEKKTADFASEVAAAAAGRA" FT misc_feature 1635536..1635592 FT /note="Signal peptide predicted for BPP1528 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.750) with cleavage site FT probability 0.575 between residues 19 and 20" FT misc_feature 1635596..1635718 FT /note="HMMPfam hit to PF00627, UBA/TS-N domain, score FT 0.002" FT misc_feature 1635755..1636399 FT /note="HMMPfam hit to PF00889, Elongation factor TS, score FT 1.1e-87" FT misc_feature 1635815..1635847 FT /note="PS01127 Elongation factor Ts signature 2." FT CDS 1636617..1637279 FT /transl_table=11 FT /gene="pyrH" FT /gene_synonym="smbA" FT /locus_tag="BPP1529" FT /product="uridylate kinase" FT /EC_number="2.7.4.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1421" FT /protein_id="CAE36831.1" FT /translation="MGEDAFGINRSTIVRMTDEIAEVAALGVELAIVIGGGNIFRGVAP FT GAQGMDRATADYMGMMATIMNALALQDALKHKGVDTRVQSALNIDQVVEPYIRPKALRY FT LEEGKVVIFAAGTGNPFFTTDTAAALRGAEIGAEIVLKATKVDGIYSADPNKDPTATRY FT ARISFDEAIVRRLEVMDATAFALCRDQKLPIKVFSINKFGALKRAVSGEDEGTLVHV" FT misc_feature 1636617..1637210 FT /note="HMMPfam hit to PF00696, Amino acid kinase family, FT score 4.8e-46" FT CDS 1637294..1637854 FT /transl_table=11 FT /gene="frr" FT /gene_synonym="rrf" FT /locus_tag="BPP1530" FT /product="ribosome recycling factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1422" FT /protein_id="CAE36832.1" FT /translation="MSVADIRKSAETRMAKSLETLKASLAKIRTGRAHTGILDHVQVEY FT YGSPVPISQVANVNLVDARTISVQPYEKSMAGPIEKAIRESDLGLNPVSMGETIRVPMP FT ALTEERRRDLTKVVKSEGEDAKVAVRNLRREANEALKKLVKDKEISEDDERRAQDDVQK FT LTDRAVGDIDKMIVQKEAEIMTV" FT misc_feature 1637351..1637845 FT /note="HMMPfam hit to PF01765, Ribosome recycling factor, FT score 6.6e-85" FT CDS 1637892..1638785 FT /transl_table=11 FT /gene="uppS" FT /gene_synonym="rth" FT /locus_tag="BPP1531" FT /product="undecaprenyl pyrophosphate synthetase" FT /EC_number="2.5.1.31" FT /note="ortholog of Bordetella pertussis (BX470248) BP1423" FT /protein_id="CAE36833.1" FT /translation="MSISESVPYAPSRPRWSCRIWRRRDGAGFCNTFLLAALRQAPAMA FT LSSTQAIPETGDIPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVR FT YLTLFAFSSENWRRPADEVSLLMRLFVQALEREVDKLQDQGVRLHVVGDLSAFEPKLQE FT LIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLRADPGLAQDPDRIDEARLAEHL FT SMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFWPDFGADELDAAFEWYRTRE FT RRFGRTSAQLRGGAKR" FT misc_feature 1638084..1638749 FT /note="HMMPfam hit to PF01255, Putative undecaprenyl FT diphosphate synthase, score 4.1e-98" FT CDS 1638805..1639662 FT /transl_table=11 FT /gene="cdsA" FT /gene_synonym="cds" FT /locus_tag="BPP1532" FT /product="phosphatidate cytidylyltransferase" FT /EC_number="2.7.7.41" FT /note="ortholog of Bordetella pertussis (BX470248) BP1424" FT /protein_id="CAE36834.1" FT /translation="MLGQRIITAAVLLAVLALTLALANPWWFVALLALGAACAAWEWLR FT LTVRQPPSGALCVGLAAALLAAMLAMAQAWIQGGVSGLRLEVWVGYWLTPAIVAVWLLG FT AGTAVARGRADAPAASLGWTLFAIPAVLAAWSVLALMYLSRGGAYVVSLLALVWVADIA FT AYFAGRAFGKRKLAPRVSPGKTVAGAVAGVLGAVAWIALSSQWDGTYGQALVERWSWWL FT ALPAAALLGVVSIVGDLFESLLKRRAGRKDSSALLPGHGGVYDRIDAILPVAPLALLMS FT GVLF" FT misc_feature 1638805..1638873 FT /note="Signal peptide predicted for BPP1532 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.637 between residues 23 and 24" FT misc_feature join(1638817..1638870,1638880..1638948,1638967..1639035, FT 1639063..1639131,1639165..1639233,1639246..1639305, FT 1639342..1639410,1639468..1639536) FT /note="8 probable transmembrane helices predicted for FT BPP1532 by TMHMM2.0 at aa 5-22, 26-48, 55-77, 87-109, FT 121-143, 148-167, 180-202 and 222-244" FT misc_feature 1639243..1639656 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01148, Phosphatidate FT cytidylyltransferase, score 3.4e-51" FT misc_feature 1639528..1639608 FT /note="PS01315 Phosphatidate cytidylyltransferase FT signature." FT CDS 1639659..1640858 FT /transl_table=11 FT /gene="dxr" FT /locus_tag="BPP1533" FT /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" FT /EC_number="1.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1425" FT /protein_id="CAE36835.1" FT /translation="MTRFQRVAVLGSTGSIGDSTLDVIARHPDRLGVYALSAYSRMDKL FT AAQAAACGAAVVVVPDDAAAARFRAAWRGKAAMPEVRVGPRTLAETAAAPECTTVMAAI FT VGAAGLPAALAAAQAGKRVLLANKEALVAAGSLFMAAVRENGAELLPIDSEHNAIFQCM FT PQGARAAAPTAPAPGVRRLLLTASGGPFRRQDPADLHEVTPAQACAHPNWSMGRKISVD FT SATMLNKGLEVIEAHWLFAMPSERIDVLIHPQSVVHSMVEYDDGSVLAQLGQPDMRTPI FT AYGLGFPERLASGVGLLDLTRWGRLDFEQPDLQRFPCLALSFAALRAGQPACVALNAAN FT EVAVAAFLEGRLRYTWVARVIEAVLEWQAKQASVTLTSLDDVLDLDARARSFAGNLGLA FT " FT misc_feature 1639677..1640837 FT /note="HMMPfam hit to PF02670, 1-deoxy-D-xylulose FT 5-phosphate reductoisomerase, score 2.2e-173" FT CDS 1640898..1642232 FT /transl_table=11 FT /locus_tag="BPP1534" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1426" FT /protein_id="CAE36836.1" FT /translation="MLFTLLAFVVALGTLITFHELGHYWIARLCGVRVLRFSVGFGRVL FT ARRTDRHGTEWAISAIPLGGYVKMQDDPPAGASAAEAARSFNAQPVGRRIAIVAAGPLF FT NLFLAVVLYAGLNLAGTEVPAPVVGQPAAGTPAAQAGLMAGDRIEAVQGRAVDSWNDAR FT WRLLDVLSSQGEAQLEVRGPGGAARGLVLQVPGGNRLDPADGDPLAETGLRLAQPKPVV FT REVIAGGAGEQAGLRGGDLIVAAGQAADLDAGALVALIQRHAGQPLALTVQRGADRLTL FT TVVPRAESVQGQEVGRIGVQLGGDIPMVTVRYGVIDSVWRGAQRTWDTAWLSLRMMGRM FT VLGEVSWRNISGPVTIADYAGQTARIGLEAYIAYLALISISLGVLNLLPIPMLDGGHLL FT YYLVEIVKGSPVSDRWIDIGQRAGIGLLAGLMGLALFNDFARLFT" FT misc_feature join(1640910..1640978,1641180..1641248,1642008..1642076, FT 1642149..1642217) FT /note="4 probable transmembrane helices predicted for FT BPP1534 by TMHMM2.0 at aa 5-27, 95-117, 371-393 and FT 418-440" FT misc_feature 1640943..1640972 FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT misc_feature 1641426..1641722 FT /note="HMMPfam hit to PF00595, PDZ domain (Also known as FT DHR or GLGF), score 0.01" FT CDS 1642285..1644621 FT /transl_table=11 FT /locus_tag="BPP1535" FT /product="probable surface antigen" FT /note="ortholog of Bordetella pertussis (BX470248) BP1427" FT /protein_id="CAE36837.1" FT /translation="MSLRRMFHHKKGVIPGLLAAALLAPALAHAFEPFVVRDIRVEGIQ FT RTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTDNNVVVVVVQERPTI FT ASISFNGMREFDSKAITKSLAQVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVEVTA FT TVTPLPRNRVGVSFDVFEGEVAKIREIRVVGSKAFSEGELLDQFDLTTPGWLTWYTNTD FT KYSREKLEGDIERLRSFYLDQGYLEFTVEPPQVTISPDRKDIYITITVHEGEPYKVREV FT KLAGNLMGLDSEINNLVEIKSGEVFSAAKANNSAKAITDYLGDLGYAFANVNPNPQLDR FT AKHEADVTFYVDPSRRVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRV FT DRLGYFNEVNVKTDPVPGSPDQVDVNVDVKEKPTGIINLGVGYGSSEKAILSAGISEDN FT VFGSGTNLTLQLNTSKTNRAVVLSHTDPYFTKDGISRTTSAYYRVTEPWDNNDGDYRVK FT AMGLGMNFGVPISEYDRIFLGGTFERNQIDLYNNSPQAYRDFVDQYGDSTNALIFNTGW FT SKDTRDSALAPTKGAYTRLKGDFSTMDLKYYLLTAQQQYYLPLGRSYTLALNGMIDYGR FT SYGGLDYPVIKNVYAGGIGTVRGYEGASLGPRDRLTGDYIGGSRRMVANAQLYLPFPGA FT SKDRTLRWFVFTDAGQVAAGSGMSCTAGKPGSEVEDPCGWRFSAGIGLSWQSPLGPLQL FT SYARPLNSKSGDDTQAFQFQIGTGF" FT misc_feature 1642285..1642374 FT /note="Signal peptide predicted for BPP1535 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.755 between residues 30 and 31" FT misc_feature 1642312..1644615 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01103, Bacterial surface antigen, FT score 1e-206" FT misc_feature 1642318..1642377 FT /note="1 probable transmembrane helix predicted for BPP1535 FT by TMHMM2.0 at aa 12-31" FT misc_feature 1643497..1643520 FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT CDS 1644699..1645310 FT /transl_table=11 FT /locus_tag="BPP1536" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1428" FT /protein_id="CAE36838.1" FT /translation="MAQYRLCFTSLEGEIFMMSDFALNTSGSKRAKRGAGKLGVSLALA FT GALLFGSSAAVTAQAQGTKIGFVNTERILRESGPAKAAQSKIESEFKRRDDELQRLSSS FT LRSQAEKFDKDAPVLSESDRVKRQRELSNLDMDLQRKRREFQEDFNRRRNEEFSSIVTK FT ANDAIKRIAEQENYDLIIQDAVTVNPRIDITDKVIQSLGR" FT misc_feature 1644699..1644878 FT /note="Signal peptide predicted for BPP1536 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.788) with cleavage site FT probability 0.380 between residues 60 and 61" FT misc_feature 1644810..1644878 FT /note="1 probable transmembrane helix predicted for BPP1536 FT by TMHMM2.0 at aa 38-60" FT CDS 1645319..1646410 FT /transl_table=11 FT /gene="lpxD" FT /gene_synonym="firA" FT /locus_tag="BPP1537" FT /product="UDP-3-O-[3-hydroxymyristoyl] glucosamine FT N-acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1429" FT /protein_id="CAE36839.1" FT /translation="MPVLLDPENALALDVLLAGTDAQGLDWHLSAPDAADLPRIRGIGT FT LSSAGNEEISFLSNPRYQNQLATTRAAAVIVTPDVAQARQEQGASGHVLVVCKHPYLLY FT ARLAQWFERASRPAGPAGVHPSAVVDPSAEIDADARVGAQCVIEAGARIGRGARLGPGC FT VIGAGSTVGADSLLHPRVTLYAGVHVGERAIIHSGAVLGADGFGFAPDPTLGRGAWGKI FT PQLGGVRVGNDVEIGANTTIDRGALDDTIVGDGVKLDNQIMVAHNVRIGAHTAIAACVG FT IAGSTTIGERCTIGGASMLSGHLAIADDVNISGGTAVTSNIAKAGRYTGVYPYAEHSEW FT QRNAAVIQQLALLRRRLRALERE" FT misc_feature 1645712..1645765 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 39" FT misc_feature 1645766..1645819 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.016" FT misc_feature 1645775..1645861 FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT misc_feature 1645820..1645873 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 33" FT misc_feature 1645874..1645927 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.47" FT misc_feature 1645997..1646050 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.3" FT misc_feature 1646063..1646116 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 41" FT misc_feature 1646072..1646158 FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT misc_feature 1646117..1646170 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 14" FT misc_feature 1646171..1646224 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 65" FT CDS 1646434..1646937 FT /transl_table=11 FT /gene="fabZ" FT /gene_synonym="sefA" FT /locus_tag="BPP1538" FT /product="(3R)-hydroxymyristol-[acyl carrier protein] FT dehydratase" FT /EC_number="4.2.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1430" FT /protein_id="CAE36840.1" FT /translation="MAAHCNIIYFCFAGKQMELDIKGIMDRLPHRYPMLLIDRVLEMVP FT GKSIVAIKNVSINEPFFTGHFPHHPVMPGVLIVEAMAQASALFSFTDENGGLKCDGAKT FT AYYLVGIDGARFRKPVVPGDQLRLEVEAERLSCTICKYQGRALVDGQLVAEAKLMCAIR FT SLEE" FT misc_feature 1646488..1646898 FT /note="HMMPfam hit to PF01377, Thioester dehydrase, score FT 1.5e-65" FT CDS 1646938..1647732 FT /transl_table=11 FT /gene="lpxA" FT /locus_tag="BPP1539" FT /product="acyl-[acyl-carrier-protein]--UDP-N-acetylglucos FT amine O-acyltransferase" FT /EC_number="2.3.1.129" FT /note="ortholog of Bordetella pertussis (BX470248) BP1431" FT /protein_id="CAE36841.1" FT /translation="MSGNIHPTAVVDPAAQIDSSVVIGPYSVVGPGVSIAAGTEVGAHC FT VLDGVTSIGRDNRFYRFCSIGGMPQDKKYSGEPTRLVIGDRNTVREFTTFNTGTVQDGG FT VTSIGDDNWIMAYVHIAHDCHIGNNTILANSVQLGGHVQVGDWAIVGGLTGVHQFAKIG FT AHSMTGSNSSLMQDAPPFVLAAGNPCRPVGVNVEGLKRRGFSAAAISALRDAYKSIYRR FT GLSLDEARAELRARQQAEPDVAEHLQTMLDFLDASTRGIIRP" FT misc_feature 1646977..1647030 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 62" FT misc_feature 1647031..1647084 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 17" FT misc_feature 1647085..1647138 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 2.5e+02" FT misc_feature 1647250..1647303 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 36" FT misc_feature 1647304..1647357 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 2.1" FT misc_feature 1647358..1647411 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 2.5e+02" FT misc_feature 1647412..1647465 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 2.5e+02" FT CDS 1647729..1648910 FT /transl_table=11 FT /gene="lpxB" FT /gene_synonym="pgsB" FT /locus_tag="BPP1540" FT /product="lipid-A-disaccharide synthase" FT /EC_number="2.4.1.182" FT /note="ortholog of Bordetella pertussis (BX470248) BP1432" FT /protein_id="CAE36842.1" FT /translation="MSLRIGMVAGEPSGDLLAGRIIAGLQARAPGVHCAGIGGPQMAAR FT GFEAWHPMHALTVFGYIDAFKRIPSLLSTYGDVKRRLLAEPPSVFVGIDAPDFNLRLEH FT QLRQAGTPTVHFVGPSIWAWRYERINKIRAAVSHMLVLFPFEEALYRKEGIPVTYVGHP FT LAGVIPMQPDRAAARARLGIDADARVLAILPGSRSSEIRLLAPRFLQAAAELVRRDPRL FT QCVVPMVNPQRRAEFEAIAAQHPVPGLRCVTAAEGQGETPVAWSVMEASNAVLVASGTA FT TLETALYKRPMVISYVLSPWMRRIMAWKSGQQRPYLPWVGLPNVLLRDFAVPELLQDEA FT TPAALAEATWQALTDEAGAARIEARFTALHQDLLRDTPALAAQAILEVADGAA" FT misc_feature 1647741..1648883 FT /note="HMMPfam hit to PF02684, Lipid-A-disaccharide FT synthetase, score 4.5e-97" FT CDS 1648897..1649502 FT /transl_table=11 FT /gene="rnhB" FT /locus_tag="BPP1541" FT /product="ribonuclease HII" FT /EC_number="3.1.26.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP1433" FT /protein_id="CAE36843.1" FT /translation="MEQPDLFGTLAPLPAIIAGVDEAGRGPLAGAVYAAAVILDPDRPV FT DGLADSKVLKAEQREALAVQIRAQALAWFVASASVQEIDSLNILRATMLAMQRAVAGLA FT MAPELAMVDGNQAPKLRCAVQTVIKGDALVPAISAASILAKTARDADLLRLHALYPQYG FT FDQHKGYGTPQHLSLLREHGPCPEHRRSFAPIKAYGAP" FT misc_feature 1648948..1649481 FT /note="HMMPfam hit to PF01351, Ribonuclease HII, score FT 1.3e-65" FT CDS 1649448..1650272 FT /transl_table=11 FT /locus_tag="BPP1542" FT /product="putative RNA methyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1434" FT /protein_id="CAE36844.1" FT /translation="MPRTPAQLRADQGVRRAMKHLSSRDNPAVKALHKLAAGGGRRDGR FT ILLDGVHLCQAWLAHQGTPLQALFDVARLDHPEIRALAGQVPPQHCLALDSRLLQGLAS FT VESGQGVVFVARAPEPALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGT FT AAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPARCA FT WVFGHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFEQRRQRR" FT misc_feature 1649829..1650248 FT /note="HMMPfam hit to PF00588, SpoU rRNA Methylase family, FT score 2.6e-19" FT CDS complement(1650284..1651111) FT /transl_table=11 FT /locus_tag="BPP1543" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1435" FT /protein_id="CAE36845.1" FT /translation="MTSTPIERAVYIVSDSTGITAETFSHSVLSQFDEVNFKPVRLPFI FT DTLDKAREVVARINRNALEAGVPPIVFSTLVNPEILALVRQSNGVFLDLFGTFVSHIEQ FT ALGLKSSHSIGRSHMAANSEKYRNRIDAINFSLAHDDGQFVNQLDQADVILVGVSRCGK FT TPTSLYLAMQYAVKAANFPLTPDDFERGALPKTIAPYRGKLFGLSIQPERLAEVRNERR FT PNSHYARLEQCRYEVAEAERMMRREGISWLSTTTKSIEEIATTVLQEVGLERV" FT misc_feature complement(1650296..1651099) FT /note="HMMPfam hit to PF03618, Domain of unknown function FT (DUF299), score 6.7e-120" FT misc_feature complement(1650620..1650643) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1651273..1653636 FT /transl_table=11 FT /gene="ppsA" FT /gene_synonym="pps" FT /locus_tag="BPP1544" FT /product="phosphoenolpyruvate synthase" FT /EC_number="2.7.9.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1436" FT /protein_id="CAE36846.1" FT /translation="MSYVVSFEQLRMTDVDSVGGKNASLGEMISQLAGAGVRVPGGFAT FT TAQAFRDFLQASGLDKRIADRLATLNPEDVRELASAGAQIRQWVIDAPFSPEFEQAIRT FT AFAELDADGKGSFAVRSSATAEDLPDASFAGQQETFLNVVGVDDVLDKIRHVFASLYND FT RAISYRVHKGYAHAEVALSAGIQRMVRSDKGSAGVMFTIDTESGFQDVVFITSSYGLGE FT TVVQGAVNPDEFYVFKPSLERGNYPIVSRRIGSKLIKMEFDPERPEGRAVRTVDVPVSE FT RNRYSLTDDEVIELARYAVIIEKHYQRPMDIEWGRDGVDGKIYILQARPETVKSQQGVN FT DVQQRYRLKATGQVLVTGRAIGQKIGAGKVRVVADISEMDKVQAGDVLVTDMTDPNWEP FT VMKRASAIITNRGGRTCHAAIIARELGIPAVVGCGDATDLLKDGQAVTASCAEGDEGRI FT YDGLIETEVEEVRRGEMPPIDVKIMMNVGNPQLAFDFAQIPNAGVGLARLEFIINNNIG FT IHPKAVLDYPNVDGELKKAVESAARGHASPRAFFVEKLAEGVATIGAAFWPKPVIVRMS FT DFKSNEYRKLVGGSRYEPEEENPMLGFRGASRYIAADFEECFRMECEALKKVRDEMGLT FT NVEIMVPFVRTLGQARKVVELLAAHGLARGENGLKLIMMCEVPSNAILAEQFLEYFDGF FT SIGSNDMTQLTLGLDRDSGMELLAADFDERDDAVKFMLRRAIKACLAANKYVGICGQGP FT SDHPDFAQWLKDEGILSMSLNPDTVVETWQQLAK" FT misc_feature 1651276..1652358 FT /note="HMMPfam hit to PF01326, Pyruvate phosphate dikinase, FT PEP/pyruvate binding domain, score 2.1e-129" FT misc_feature 1652359..1652640 FT /note="HMMPfam hit to PF00391, PEP-utilizing enzyme, mobile FT domain, score 3.4e-40" FT misc_feature 1652506..1652541 FT /note="PS00370 PEP-utilizing enzymes phosphorylation site FT signature." FT misc_feature 1652662..1653630 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02896, PEP-utilizing enzyme, TIM FT barrel domain, score 7e-104" FT misc_feature 1653346..1653402 FT /note="PS00742 PEP-utilizing enzymes signature 2." FT CDS complement(join(1653704..1653934,1653934..1654413)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1545" FT /product="probable class-I glutamine amidotransferase FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1437" FT /db_xref="PSEUDO:CAE36847.1" FT misc_feature complement(join(1653806..1653934,1653934..1654362)) FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I, score 2.2e-08" FT variation complement(1653934..1653936) FT /note="GCC in parapertussis; GCC(GGCGCCACCG) in pertussis" FT misc_feature complement(1654102..1654137) FT /note="PS00442 Glutamine amidotransferases class-I active FT site." FT CDS join(1654537..1654662,1654665..1654964) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1546" FT /product="putative membrane protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1438" FT /db_xref="PSEUDO:CAE36848.1" FT misc_feature 1654537..1654629 FT /note="Signal peptide predicted for BPP1546 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.622) with cleavage site FT probability 0.235 between residues 31 and 32" FT misc_feature join(1654555..1654623,1654666..1654719) FT /note="2 probable transmembrane helices predicted for FT BPP1546 by TMHMM2.0 at aa 7-29 and 44-61" FT variation 1654663..1654664 FT /note="AC in parapertussis; (-) in pertussis" FT CDS 1655018..1655944 FT /transl_table=11 FT /locus_tag="BPP1547" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1440" FT /protein_id="CAE36849.1" FT /translation="MIDVSTVVLIVIVILALMIVVKAIAIVPQQHAWVVERLGKFDRVL FT SPGAGFVIPFIERVSYKHSLKEIPLDVPSQVCITRDNTQLQVDGVLYFQVTDPMRASYG FT SSNYISAITQLAQTTLRSVIGKLELDRTFEEREFINSTIVASLDEAALNWGVKVLRYEI FT KDLTPPNEILRAMQAQITAEREKRALIAASEGRRQEQINIATGEREAAIARSEGEKQAQ FT INQAQGEAAAVLAIAEATAKAIEQVGEAVRQPGGMEAVNLKVAERYVDAFSNVAKEGNT FT LILPSNLSDVGGLIASAMTIVKSTKSA" FT misc_feature 1655018..1655092 FT /note="Signal peptide predicted for BPP1547 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.709) with cleavage site FT probability 0.611 between residues 25 and 26" FT misc_feature 1655036..1655104 FT /note="1 probable transmembrane helix predicted for BPP1547 FT by TMHMM2.0 at aa 7-29" FT misc_feature 1655084..1655608 FT /note="HMMPfam hit to PF01145, SPFH domain / Band 7 family, FT score 1.1e-70" FT CDS join(1656010..1656567,1656571..1656747,1656749..1657162) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1548" FT /product="probable membrane protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1441" FT /db_xref="PSEUDO:CAE36850.1" FT misc_feature 1656010..1656102 FT /note="Signal peptide predicted for BPP1548 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.887) with cleavage site FT probability 0.280 between residues 31 and 32" FT misc_feature join(1656019..1656087,1656121..1656180,1656190..1656258, FT 1656277..1656336,1656364..1656423,1656460..1656528, FT 1656571..1656639) FT /note="7 probable transmembrane helices predicted for FT BPP1548 by TMHMM2.0 at aa 4-26, 38-57, 61-83, 90-109, FT 119-138, 151-173 and 188-210" FT variation 1656568..1656570 FT /note="In-frame TGA stop codon in parapertussis; TGG in FT pertussis" FT misc_feature join(1656661..1656747,1656749..1657141) FT /note="HMMPfam hit to PF00990, GGDEF domain, score 1.8e-46" FT variation 1656741..1656748 FT /note="(CG)4 in parapertussis; (CG)5 in pertussis" FT CDS complement(1657143..1657610) FT /transl_table=11 FT /gene="smpB" FT /gene_synonym="smqB" FT /locus_tag="BPP1549" FT /product="SsrA-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1442" FT /protein_id="CAE36851.1" FT /translation="MSIIDNRKATHDYFIEDRYEAGMVLEGWEVKAIRDGRVHLKESYV FT IVRDGEIYLLGMHVSPLPTASTHIRPDATRTRKLLLKAEEIRKLIGKVEQRGYTLVPLN FT LHYKNGRIKLDFALGRGKKLYDKRDTAREKDWQREKERVLKHDTRVNQRDS" FT misc_feature complement(1657404..1657610) FT /note="HMMPfam hit to PF01668, SmpB protein, score 3.4e-38" FT misc_feature complement(1657512..1657550) FT /note="PS01317 Protein smpB signature." FT CDS 1657676..1658110 FT /transl_table=11 FT /locus_tag="BPP1550" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1443" FT /protein_id="CAE36852.1" FT /translation="MHKVQRSVLVPYSAAQMFDLVADVEKYPEFMPWCGGAEVHSRSEH FT GMQASILISFAGLKQRFSTRNTHDYPQRIDLELVDGPFSMLVGHWVFQPLAEDACKVLF FT TLEYAFSNRALEMVVGPVFNRIAASFIDSFTKRAQAKYGE" FT misc_feature 1657676..1658104 FT /note="HMMPfam hit to PF03654, Uncharacterised protein FT family (UPF0083), score 3.2e-53" FT CDS 1658100..1658450 FT /transl_table=11 FT /locus_tag="BPP1551" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1444" FT /protein_id="CAE36853.1" FT /translation="MANDTPAPAGSLRVTVCHACPDGAWQRAVTLPAGATVADAVAASG FT FAAAHRGQDPWAHGVGVFGKAQAADAPLADGDRVEIYRGLSFDPKESRRRRAEHRRALA FT ARGGKARPAGLL" FT misc_feature 1658133..1658384 FT /note="HMMPfam hit to PF03658, Uncharacterised protein FT family (UPF0125), score 3.4e-17" FT CDS 1658647..1659801 FT /transl_table=11 FT /locus_tag="BPP1552" FT /product="probable acyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1445" FT /protein_id="CAE36854.1" FT /translation="MDFELTDEQRAFAQAARDYAQGELAPHAARWDAEGIFPREAFARA FT GELGFCAIYASEEIGGLGLPRLDATLVFEEMAAVDPSTTAFLTIHNMATWMVGQWARPA FT VREQWGPLLASGEKLASYCLTEPNAGSDAGSLATRAERQGDDYVLNGAKAFISGGGDTD FT LLVVMARTGGDGPGGVSAFAVPADAAGIAYGRKEEKMGWNSQSTRPITFEQVRVPASHM FT LGEPGEGFKIAMKGLDGGRINIGTCSVGAAQGAMDAARRYMDERRQFNRKLAQFQALQF FT KLADMATHLVAARQMVRLAACKLDAGSADASTYCAMAKRFATDMGFQICLDAQQIHGGY FT GYLRDYPLERLVRDTRVHQILEGTNEIMRVIVARQLLEKGADIR" FT misc_feature 1658659..1659009 FT /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, FT N-terminal domain, score 1.9e-17" FT misc_feature 1659013..1659051 FT /note="PS00072 Acyl-CoA dehydrogenases signature 1." FT misc_feature 1659013..1659315 FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 5.7e-46" FT misc_feature 1659325..1659777 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 6e-71" FT misc_feature 1659649..1659708 FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT CDS 1659798..1660970 FT /transl_table=11 FT /locus_tag="BPP1553" FT /product="enoly-CoA hydratase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1446" FT /protein_id="CAE36855.1" FT /translation="MNAPVLFEERIADNGVRLGVATLNAPQTLNGLSLEMVELLDARLL FT AWAADAAVAMVILQGAGEKAFCAGGDLHGLYRSMRENTGGDPWANTHARRFFEHEYRLD FT YLIHTYPKPVLCWGHGIVMGGGVGLMMGASHRVVSETTRMAMPEITIGLFPDVGGSWLL FT NRMPGRTGLFLALTGAHVNASDAFFAGLADFRLDSAQWPDFCASLLSLPWAGQPGGPGT FT GNAAPRSINDGLLRQALLAHEPATQLEPGPLRQHSFLVNSLCSGKRLDDIYAEIAELKD FT HADPWLARAAATMLAGSPGSARLAYALQQHTRLRSLADVFRIEYVAALACAAHGDFAEG FT IRALLVDKDRQPRWNPATLSEASDDWVRKFFDEPWPAGQPHPLADLGHGA" FT misc_feature 1659852..1660388 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 1.9e-14" FT CDS 1661018..1661911 FT /transl_table=11 FT /gene="mmsB" FT /locus_tag="BPP1554" FT /product="3-hydroxyisobutyrate dehydrogenase" FT /EC_number="1.1.1.31" FT /note="ortholog of Bordetella pertussis (BX470248) BP1447" FT /protein_id="CAE36856.1" FT /translation="MSSIAFIGLGNMGAPMALNLVKAGHDLTVFDLVPAAVKTLTDAGA FT RAAGSAAEAVQGAELVISMLPASKHVEGLYLGQDLLASIGASALVIECSTIAPDSARKV FT AAAAQARGIAMIDAPVSGGTGGAAAGTLTFIVGGEAPALERARPVLASMGKNIFHAGGA FT GAGQVAKICNNMLLGILMAGTSEALALGVANGLDPKVLSDIISKSSGRNWATELYNPWP FT GVMEHAPASKGYAGGFGVDLMLKDLGLAAEAALGTRSSILLGELARNLYSLHSQGGSGG FT LDFSSIVNLYSPGERN" FT misc_feature 1661018..1661503 FT /note="HMMPfam hit to PF03446, NAD binding domain of FT 6-phosphogluconate dehydrogenase, score 0.0015" FT misc_feature 1661033..1661068 FT /note="PS00895 3-hydroxyisobutyrate dehydrogenase FT signature." FT CDS 1661957..1662394 FT /transl_table=11 FT /locus_tag="BPP1555" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1448" FT /protein_id="CAE36857.1" FT /translation="MPDTEAFEAARQRVHDNFARQSVMALIGARLGAVEPGEVEIALPY FT RADLCQQNGFLHAGISTTIADSAGGYAAYTLFGPGEDVLTSEFKMNFLAPADGEHFVAS FT GKVLKPGRRLSICQVELRACRGERSTLCLVGLMTAVRVTPR" FT misc_feature 1662005..1662382 FT /note="HMMPfam hit to PF02584, Uncharacterized protein FT PaaI, COG2050, score 0.00016" FT CDS 1662454..1663143 FT /transl_table=11 FT /locus_tag="BPP1556" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1449" FT /protein_id="CAE36858.1" FT /translation="MPARSHHRIFRSGWLRAAVLGANDGIVSTASLIAGVAAAQASHAA FT ILTSGLAGLVAGALSMAAGEYVSVKSQADIEAADLRLEQSSLKRNSREELEELTGIYVE FT RGLSPDLAGQVARQLTRHNALDAHARDELGISVHNRAQPVQAALASAASFAVGAALPLA FT IAMAAPLAQLMPVVIAGSVAGLGILGAVAARAGGAPVGPAAVRVVLLGAAAMALTAGVG FT ALFGVAV" FT misc_feature 1662454..1662585 FT /note="Signal peptide predicted for BPP1556 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.967) with cleavage site FT probability 0.865 between residues 44 and 45" FT misc_feature join(1662490..1662558,1662586..1662654,1662889..1662957, FT 1662970..1663029,1663066..1663134) FT /note="5 probable transmembrane helices predicted for FT BPP1556 by TMHMM2.0 at aa 13-35, 45-67, 146-168, 173-192 FT and 205-227" FT CDS complement(1663153..1664169) FT /transl_table=11 FT /locus_tag="BPP1557" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1845" FT /protein_id="CAE36859.1" FT /translation="MHAFYDSIPARADGSAQCAPLASLRVIGAAGADALAFLHGQLTQD FT VTGQPADHARLAGYCTAKGRLLATLVMWRAAAADESAPVWQALVRADVAEAVLKRLSMF FT VLRAKARLAPVPAWAAGVQCAPAALAALQDAAGGALPAAPWQRAELPTGTWIGAPSADA FT QPRWWWIATEAQLERAGALAAHLGRASESAWQAADLAAGLPWIGAATQDVFIPQTVNLD FT LIGGVSFTKGCYPGQEVVARSHYRGTVKRRMAHGVIAEAPADLPDPLAGQDIYDSARPD FT EPCGRVVDAARSDGQLALLFETTLASLPDGDLRLLSAQGPRIALAPLPYELAGNAAG" FT CDS 1664336..1665382 FT /transl_table=11 FT /locus_tag="BPP1558" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1846" FT /protein_id="CAE36860.1" FT /translation="MRTLMRKRIRFYFLLLVLVALLGAALAAGGAWTWMHRPVALKSDR FT IDFVVDPGSTPRAIARTLNQAGVAVWEPGFVWMARLSELDKQIKAGGYQAIDGDSPWQL FT LQRLARGDMSQRQITFLEGWMFRQMRQALREHPDVKQTLGETSDEALMERLGSTVTHPE FT GMFFPDTYVFTPGSTDFDILRRAYQEGQRILESTWAKRQDGLPVGTPYEALILASIVEK FT ETGHGPERARVAGVFANRLRIGMLLQTDPTVIYGMGEAYQGRIRKRDLQTDTPWNTYTR FT PGLPPTPIAAPGRAALLAAVQPERHKYLFFVSRGNGTSEFSVNLNDHNRNVSRYILGQG FT QPQQGSQQ" FT misc_feature 1664336..1664416 FT /note="Signal peptide predicted for BPP1558 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.719 between residues 27 and 28" FT misc_feature 1664348..1665349 FT /note="HMMPfam hit to PF02618, Uncharacterized BCR, YceG FT family COG1559, score 3e-86" FT misc_feature 1664372..1664440 FT /note="1 probable transmembrane helix predicted for BPP1558 FT by TMHMM2.0 at aa 13-35" FT CDS 1665379..1666005 FT /transl_table=11 FT /gene="tmk" FT /locus_tag="BPP1559" FT /product="thymidylate kinase" FT /EC_number="2.7.4.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP1847" FT /protein_id="CAE36861.1" FT /translation="MTPRGRFITLEGVDGAGKSTHTAWMVQALRDLGLTVLATREPGGT FT PVGEKLRELLLSEPMALETETLLMFAARCEHVREVIAPALARGEWVVCDRFTDASYAYQ FT GGGRQLGAARVAALEQWVHPDLQPDRTWLFDVPLDVARARLARSRQLDRFEREEDAFFE FT RTRAAYHERARSSDGRIRIIDSSRPLEVVRAQLDSEVRELVAQAA" FT misc_feature 1665406..1665966 FT /note="HMMPfam hit to PF02223, Thymidylate kinase, score FT 5.4e-57" FT misc_feature 1665412..1665435 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1666002..1667054 FT /transl_table=11 FT /gene="holB" FT /locus_tag="BPP1560" FT /product="DNA polymerase III, delta' subunit" FT /EC_number="2.7.7.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP1848" FT /protein_id="CAE36862.1" FT /translation="MSLGRFLPWQTEIARSWLSGRDRFAHAWLIHGNGGIGKLDFAAAA FT AASLLCESPRQGLACGECAACAWVASGNHPDLRRIRPEAVALEEGADQAEGAEEAEAGS FT GGAAAKRAPSKDIRIDQIRALEPWFNTATHRGGWRVALLYPAHALNVISANALLKVLEE FT PPAHTVFLLVADAPDRLLPTLVSRCRRLPLPTPSAGQALQWLGEQGVEPAADWLAAAGG FT APLAAQRLAARGDAPCPAWLAQLVQPLAAGKAPDVGTLTENLEKVAAAEWIDALQRLFT FT DLTLAAHGAASRYYPSLAEPVRQAAARAQPAQLAETARWLSRQRGLATHPLNAKLFVHA FT ALQRVVLSCQ" FT CDS 1667095..1667874 FT /transl_table=11 FT /locus_tag="BPP1561" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1849" FT /protein_id="CAE36863.1" FT /translation="MVRMYVDSHCHLNFPELAQDLPAVLDRMAANQVTHALVVSVNMPD FT WPGLMQLVEPHGNLWASVGVHPDYEDTPDPEPAELERLAAHPKVVAIGETGLDYYRLSE FT PLDWQRERFRRHIRAARSTGLPLIVHTRASAQDTVRLLREEGADEVGGVMHCFTESWEI FT AQQAMALNFHISLSGIVTFKNAQLVHEVAANMPLDRLLIETDSPYLAPVPYRGKLNDPS FT KVIHVAEKIAELKGIPVAEVAHASTENFFKLFNKIKR" FT misc_feature 1667107..1667133 FT /note="PS01137 Uncharacterized protein family UPF0006 FT signature 1." FT misc_feature 1667122..1667859 FT /note="HMMPfam hit to PF01026, TatD related DNase, score FT 2.1e-88" FT misc_feature 1667665..1667715 FT /note="PS01091 Uncharacterized protein family UPF0006 FT signature 3." FT CDS 1667925..1668761 FT /transl_table=11 FT /locus_tag="BPP1562" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1850" FT /protein_id="CAE36864.1" FT /translation="MKPLRTRFLRWRGAAAGGLLAGALLASPAWAAKQADWWVYVHNDK FT ARDIGALLAAGADPNVRYDNGQPAIMRAVVDNAWEVFDVLAANRRTDLNAENPAGETPL FT MYLAVAGQTERAQALIARGAQVNRLGWTPLHYAASKGRLETARMLLGKQALVNAPSPDG FT TTPLMMAAYSGDRRMVQLLLDAGADITTRNLKGMSAADWAAFGKSEALARELKPMIARA FT EAERQARHGAVATPKLAPAAETPPTAQPAAAPAAASQPGEGRSLSGVSGVRLNSYD" FT misc_feature 1667925..1668017 FT /note="Signal peptide predicted for BPP1562 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 31 and 32" FT misc_feature 1668309..1668407 FT /note="HMMPfam hit to PF00023, Ankyrin repeat, score FT 2.3e-07" FT misc_feature 1668408..1668506 FT /note="HMMPfam hit to PF00023, Ankyrin repeat, score FT 6.5e-09" FT CDS 1668957..1669694 FT /transl_table=11 FT /locus_tag="BPP1563" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1851" FT /protein_id="CAE36865.1" FT /translation="MQEQAIAGGAERVLYVLATLAREEAPLTVAALAERTGLAQSTLYR FT QVALLKRWGFVLEQAGAYTPGPLCVQLARGFDQSSYLIQEALPDMTRLAADSGETVGLL FT VAMSDQAVCLEMVESRHPLRCSFVKGRGLPLARGASAKSLMAFMAPARLQGRLHELAGQ FT GVDAAALARDLEAIRAAGYAVSDSEVDAGVWGCSAPVFERPHQAAGSVTLMAPSTRVAE FT RTANLINLTLAAAKRISSRLQHS" FT misc_feature 1669143..1669679 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 5.3e-15" FT CDS join(1669694..1670020,1670023..1670514) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1564" FT /product="putative glutamine-binding periplasmic protein FT precursor (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1852" FT /db_xref="PSEUDO:CAE36866.1" FT misc_feature 1669694..1669843 FT /note="Signal peptide predicted for BPP1564 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.987) with cleavage site FT probability 0.987 between residues 50 and 51" FT misc_feature join(1669853..1670020,1670023..1670502) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 6.1e-73" FT misc_feature 1669916..1669957 FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT variation 1670020..1670023 FT /note="(C)4 in parapertussis; (C)2 in pertussis" FT CDS join(1670511..1670648,1670651..1671181) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1565" FT /product="glutamine transport system permease (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1853" FT /db_xref="PSEUDO:CAE36867.1" FT misc_feature join(1670568..1670636,1670673..1670741,1670754..1670822, FT 1671066..1671134) FT /note="4 probable transmembrane helices predicted for FT BPP1565 by TMHMM2.0 at aa 20-42, 55-77, 82-104 and 186-208" FT variation 1670649..1670650 FT /note="AC in parapertussis; (-) in pertussis" FT misc_feature 1670843..1671055 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 5.4e-16" FT misc_feature 1670846..1670932 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 1671178..1671951 FT /transl_table=11 FT /gene="glnQ" FT /locus_tag="BPP1566" FT /product="glutamine transport ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1855" FT /protein_id="CAE36868.1" FT /translation="MSTQEMIRIRGLRKAYGEHEVLRGIDFNVEASQVVVVIGPSGSGK FT STLLRCCNGLEVAQGGTIDICGHNLLKDGRLLPEAELNRLRMQVGMVFQGFNLFPHLSV FT LDNVTVGPRTLRGMSRAQAEELGGDLLAKVGLREKMAAMPGSLSGGQKQRVAIARALAM FT QPRVMLFDEPTSALDPELVGEVLQVMKLLAREGMTMMVVTHEMGFAREVADVVAVMDGG FT SIVESGPPELIFSQPREARTRAFLQAVLSASQGAA" FT misc_feature 1671271..1671843 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 4.4e-58" FT misc_feature 1671292..1671315 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1671616..1671660 FT /note="PS00211 ABC transporters family signature." FT CDS join(1671948..1672019,1672022..1672132,1672135..1672887) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1567" FT /product="probable arginase (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1856" FT /db_xref="PSEUDO:CAE36869.1" FT misc_feature 1672147..1672881 FT /note="HMMPfam hit to PF00491, Arginase family, score FT 1.3e-05" FT misc_feature 1672291..1672332 FT /note="PS00147 Arginase family signature 1." FT misc_feature 1672378..1672404 FT /note="PS00148 Arginase family signature 2." FT misc_feature 1672657..1672722 FT /note="PS01053 Arginase family signature 3." FT CDS 1673020..1674369 FT /transl_table=11 FT /gene="gdhA" FT /gene_synonym="gdh" FT /locus_tag="BPP1568" FT /product="glutamate dehydrogenase" FT /EC_number="1.4.1.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP1857" FT /protein_id="CAE36870.1" FT /translation="MGPQLVSWKNKRNLSPEILPMSQAPAHSLPSYLDAEHLGPWGIYL FT QQVDRVTPYLGPLARWVETLKRPKRALIVDVPIEMDNGSIAHFEGYRVQHNTSRGPGKG FT GVRFHQDVTLSEVMALAAWMSIKNAAVNLPYGGAKGGVRVDPRTLSHSELERMTRRYTS FT EIGVIIGPSKDIPAPDVNTNAQTMAWMMDTYSMNEGATATGVVTGKPIALGGSLGRVEA FT TGRGVFVVGCEAARDLNLDVSKARIVVQGFGNVGGTAARLFHEAGAKVIAVQDHTGTIH FT NDGGLDVHKLLAHVGNQGGVAGFTGAQQLADDDFWGLETDFLIPAALEGQINENNAARV FT RAKVVVEGANGPTTPEADDILRENGVYVVPDVLANAGGVTVSYFEWVQDFSSFFWSEEE FT INQRLERLMREAYSAVSQVAKEHKVTLRTAAFIVACTRILQARQVRGLYP" FT misc_feature 1673221..1673613 FT /note="HMMPfam hit to PF02812, Glu/Leu/Phe/Val FT dehydrogenase, dimerisation domain, score 2.5e-64" FT misc_feature 1673416..1673457 FT /note="PS00074 Glu / Leu / Phe / Val dehydrogenases active FT site." FT misc_feature 1673659..1674357 FT /note="HMMPfam hit to PF00208, FT Glutamate/Leucine/Phenylalanine/Valine dehydrogenase, score FT 2.9e-95" FT misc_feature 1673968..1674009 FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT CDS complement(1674445..1675941) FT /transl_table=11 FT /gene="aldH" FT /locus_tag="BPP1569" FT /product="probable aldehyde dehydrogenase" FT /EC_number="1.2.1.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP1858" FT /protein_id="CAE36871.1" FT /translation="MTLHDSAYWRAQAAALAPEGRAYIDGAYCDAADGATFAAHSPIDG FT RKLADIAACGAADVDRAVAAARRAFEAGVWSGLAPRERKHRLLRLAALITEHQEELALL FT ETLDMGKPIRDALAFDLPETARCYAWYGEAIDKRYDEIAPTGADALATITREPLGVVAA FT VVPWNYPLMMAAWKVAPALAVGNSVILKPAEQASLSALRLAALAEQAGIPPGVFSVVPG FT LGAQAGQALGLHPDVDCIAFTGSTATGKRFMTYSGQSNLKRVWLECGGKSPHIVFADCP FT DLDRAAQVAALAIFSNQGEVCIAGSRLYVQHGIYDAFMEKVAAFAATLRPGNPLDPDSA FT LGAMVDERQTQAVMARIAAGAQEGARLRLGGRQVLTDSGGYYIEPTIFDCPGQDNSLVR FT EEIFGPVLAAQGFADEDEAVALANDSIYGLGAGLWTADLGRAHRLSRRLRAGLVWVNCY FT ADGDITVPFGGVKQSGFGRDKSLHAMDKYSDLKTTWISLR" FT misc_feature complement(1674451..1675863) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 3.5e-193" FT misc_feature complement(1675024..1675059) FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT misc_feature complement(1675123..1675146) FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT CDS complement(1675991..1677238) FT /transl_table=11 FT /gene="amaB" FT /locus_tag="BPP1570" FT /product="N-carbamoyl-L-amino acid amidohydrolase" FT /EC_number="3.5.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1859" FT /protein_id="CAE36872.1" FT /translation="MSNNSPISIDGQRLWQSLMDLARIGATPKGGNCRLALTALDGQGR FT DLVTGWMRDAGLTVRVDQVGNIFARRAGRDPSRAPVMTGSHIDTQPTGGKFDGCYGVLA FT GLEVMRTLDDHGVQTDAPLEVAIWTNEEGSRFLPVMMGSGVFAGKFPLETALTARDAEG FT KSVADELRAIGYAGADPVGGRAVDAYFEAHIEQGPILEHEDRIVGVVTGSLGVRWYDVV FT VQGMEMHAGPTPMPIRKDALYAASHLLQAVVEIANAHQPHGRGTVGEIHAYPGSRNVIP FT GQVRFTVDLRHEDEATLATMDALWRQACADTAARHAVSVQCEQVQYFAPTPFHPDLVGK FT VRDGAQRRGLPAMDIVTGAGHDAVYMAAVAPTAMIFVPCKDGISHNEIEDAQPAHLEAG FT CNVLLDAMVARANAPR" FT misc_feature complement(1676156..1677187) FT /note="HMMPfam hit to PF01546, Peptidase family FT M20/M25/M40, score 0.004" FT misc_feature complement(1676744..1676767) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(1677248..1678981) FT /transl_table=11 FT /gene="ilvG" FT /locus_tag="BPP1571" FT /product="acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP1860" FT /protein_id="CAE36873.1" FT /translation="MTTPALPERNGGQILMQQLRVHGARRVFMIPGESYLPCIDALNEH FT RGAIDAIVCRQESGAAYMAEAYGKLTGEPGICFVTRGPGATNASIGVHTAYQDSTPMIL FT FIGQVGNDFMEREAFQEIDYRRMFGQMAKWVAQIDRTERIPEFIARAFAVATSGRPGPV FT VLALPEDTLWGRARVADMPRYRRARCLPGAADLARMVELLDQAERPFMLLGGTGWSAEA FT IGQAAAFAERFELPVGTAWRRLECFDQRHPNAAGHVGWAMAPELRQRIAGADLVLAVGT FT RMGEATTEGYTVIESPLPRQRLVHAYPDPNELGRVFAPTLGIVADPAGFAAALDALRPG FT HRASRAQAVRAAHDEYLATLAPLPSPGPLNLDSAAAYVNQHIPADACITVGAGNYALYP FT HRYRQFSGPGTSLAPTVGSMGYGLPAAISAKLENPARTVVCYAGDGCFQMNMQELGVAL FT LQELGVALQYRVGVVVLVFNNGIWGTIRAHQEREFPGRAIALDFQNPDFTQFVRAYGGY FT GEAVERTEDFGPAFERARAFAEREQLPALLEIRYEADGIAPGQTLTEIHQAAQAQAAGV FT Q" FT misc_feature complement(1677335..1677892) FT /note="HMMPfam hit to PF02775, Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 6.5e-24" FT misc_feature complement(1677914..1678408) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain, score 1.1e-08" FT misc_feature complement(1678442..1678963) FT /note="HMMPfam hit to PF02776, Thiamine pyrophosphate FT enzyme, N-terminal TPP binding domain, score 3.9e-49" FT CDS complement(1678978..1679919) FT /transl_table=11 FT /gene="citE" FT /locus_tag="BPP1572" FT /product="citrate lyase beta chain" FT /EC_number="4.1.3.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP1861" FT /protein_id="CAE36874.1" FT /translation="MTPISNPGGQRRPASLRRSWMFVPGLLEQAQAAGLASGADALVAD FT LEEFTAPADRPAARRRIVALLAQCRAAGVIGAVRINKLEEDGLDDLRGIMAGAPDAIFL FT PHAESAAQIAALDRAISACEAEAGLAPGSTEIVPTLESALGVTRACEILTASPRVSACL FT LAAEDLTASLGGAERGPDGIELHALRARFLVDCVAAGCLPIDCPFNYRDPAAQQADLLW FT ARRIGLKSKCAVFAEQVPAIHAAFTPDADRVAAARDLAARFEAQRDGRDAGGARVDPPD FT YNTARRLLARHAEFEQWAARAARPRESQGEQS" FT CDS complement(join(1679916..1680875,1680875..1681195)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1573" FT /product="putative membrane protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1862" FT /db_xref="PSEUDO:CAE36875.1" FT misc_feature complement(join(1679933..1679998,1680179..1680244, FT 1680308..1680367,1680413..1680469,1680485..1680550, FT 1680611..1680676,1680713..1680778,1680809..1680865, FT 1680887..1680952,1680983..1681048,1681085..1681150)) FT /note="11 probable transmembrane helices predicted for FT BPP1573 by TMHMM2.0 at aa 15-37, 49-71, 81-103, 110-129, FT 139-161, 173-195, 215-237, 242-261, 276-296, 317-339 and FT 399-421" FT misc_feature complement(1680321..1680797) FT /note="HMMPfam hit to PF00597, DedA family, score 1.3e-06" FT misc_feature complement(1681109..1681195) FT /note="Signal peptide predicted for BPP1573 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.782) with cleavage site FT probability 0.234 between residues 29 and 30" FT CDS complement(1681199..1681681) FT /transl_table=11 FT /locus_tag="BPP1574" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1863" FT /protein_id="CAE36876.1" FT /translation="MLGRISHALSGLSKAIAALAVALLAALITYVVFERFVMHTTPHWA FT EELPRLVLVWAAFIGGVTCSHERTHLMAGLLPFVVRNPRALAICDRVNQALIIVGLAAL FT GYAGWQLAELTMDQTLPALDVSAGTVYLALPVACAITIVVHLAQLFQPADPVAAKD" FT misc_feature complement(join(1681235..1681300,1681346..1681396, FT 1681583..1681636)) FT /note="3 probable transmembrane helices predicted for FT BPP1574 by TMHMM2.0 at aa 15-33, 95-112 and 127-149" FT misc_feature complement(1681607..1681681) FT /note="Signal peptide predicted for BPP1574 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.973) with cleavage site FT probability 0.895 between residues 25 and 26" FT CDS complement(join(1681682..1682125,1682125..1682733)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1575" FT /product="putative exported protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1864" FT /db_xref="PSEUDO:CAE36877.1" FT misc_feature complement(join(1681730..1682125,1682125..1682574)) FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 8.1e-96" FT variation complement(1682123..1682125) FT /note="CTC in parapertussis; CTTCACC in pertussis" FT misc_feature complement(1682578..1682643) FT /note="1 probable transmembrane helix predicted for BPP1575 FT by TMHMM2.0 at aa 30-52" FT misc_feature complement(1682587..1682733) FT /note="Signal peptide predicted for BPP1575 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 49 and 50" FT CDS complement(1682839..1683558) FT /transl_table=11 FT /locus_tag="BPP1576" FT /product="GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1865" FT /protein_id="CAE36878.1" FT /translation="MGSFQAVAPTRLYRMIADQIAGRIRAGDFPAGGRLPAERELAEQL FT QVSRASVREALIALEIEGYVEVRVGTGVFVAAPRADGDYGVAPAPQPGHTDIGPFDLLD FT TRLLLEPECASLAAQKASPAQIAAISSAHAAMSLSDSPGAHDQAFHGAIAAACGNAALA FT AAISHIWHLSATSPVFSRLEQHFVTTKVWEAAEREHERILAAIVDRDPIRARHAMHDHL FT VGILARLREDFGSGAIR" FT misc_feature complement(1683334..1683513) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.3e-24" FT misc_feature complement(1683382..1683456) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(1683675..1684058) FT /transl_table=11 FT /locus_tag="BPP1577" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1867" FT /protein_id="CAE36879.1" FT /translation="MKPAIHLKRAYEAAAPADGRRVLIDGLWPRGLRKDALPLDDWIKD FT LAPSAALRQWFGHQTPRWPAFRERYLAELRGPSHQAQLRALLAQAGAGPLTLVYGARDT FT EHNNAVVLREALLALAAGGRGAA" FT CDS 1684113..1684595 FT /transl_table=11 FT /locus_tag="BPP1578" FT /product="putative cytochrome" FT /note="ortholog of Bordetella pertussis (BX470248) BP1868" FT /protein_id="CAE36880.1" FT /translation="MRRFPGRMLKWLVLACGLATAAGLLAWRLAPSSDYIAPAAGQDRL FT RGQAIYQANCAACHGARLEGQPDWRQRLASGRLPAPPHDASGHTWHHPDAVLLDIIRHG FT MVPGRHAPDGYQSDMPAYAGVLSDAEIALVLAYIKSTWPSQVQQDQRAATQQMTPR" FT misc_feature 1684113..1684190 FT /note="Signal peptide predicted for BPP1578 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.304 between residues 26 and 27" FT misc_feature 1684236..1684538 FT /note="HMMPfam hit to PF00034, Cytochrome c, score 0.00041" FT misc_feature 1684275..1684292 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS complement(1684608..1686305) FT /transl_table=11 FT /locus_tag="BPP1579" FT /product="putative membrane protein" FT /note="Similar to Salmonella typhi hypothetical membrane FT protein YbjL or Sty0903 SWALL:Q8Z851 (EMBL:AL627268) (561 FT aa) fasta scores: E(): 3.7e-41, 31.81% id in 572 aa, and to FT Yersinia pestis hypothetical membrane protein Ypo1326 FT SWALL:Q8ZGH1 (EMBL:AJ414147) (562 aa) fasta scores: E(): FT 1.3e-41, 32.22% id in 571 aa" FT /protein_id="CAE36881.1" FT /translation="MQAFVQFLGSNPYILLFLTIGLAVWVGKFSIKGYGLGAVAAAIVV FT GCLVATVGAAYGVKFHLDEFAKSLLYYLFMYGVGLRVGPSFVNALNKESINYAILAIIA FT PILGLAIVVLGTQFFGLPLGAAGGMLAGSQTMSAAIGSAEQAVSAGVLSLGSESPEQIS FT AMIALSYGITYIWGTVGIILLCKYLPRIWGVDAKAAALEFEKAHGVPNVDDAGLTAFHP FT FDLRAYRVENPESIGKTVQQFRTRFPQYQVVNVERGDQLLGPSAETVLQQGDVVALGGR FT LEEMTANMGMLGPEVPDARALNIPLDQAEILVTNKEVTGRPLKTFRGSELAGQIQLQRV FT ERSGVPLPIGLETTLQKRDVLFVTGLQPAVSKAGEIFGVIARHSSATDLLTLSFGMILG FT FLIGLIEVPAFGAKVGLGNAGGLLLSGIIVSSISSRLRFFGNTPNAARNILEDLGLIGF FT VAIVGINAGADLLTQLTGAIALKIFIVGFLASTIPPIIVWAIGFHIMKINPALLMGATA FT GARSHSGPAREAAKEVGSSVPWLGFPVGYAVSGVLLTVFGYFAMVLAH" FT misc_feature complement(join(1684623..1684688,1684794..1684859, FT 1684890..1684946,1685010..1685060,1685073..1685138, FT 1685754..1685819,1685949..1686014,1686036..1686101, FT 1686141..1686206,1686228..1686293)) FT /note="10 probable transmembrane helices predicted for FT BPP1579 by TMHMM2.0 at aa 4-26, 33-55, 68-90, 97-119, FT 162-184, 389-411, 415-432, 453-472, 482-504 and 539-561" FT CDS complement(join(1686410..1686778,1686778..1687782)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1580" FT /product="glutamate decarboxylase (Pseudogene)" FT /EC_number="4.1.1.15" FT /note="Similar to Lycopersicon esculentum glutamate FT decarboxylase SWALL:DCE_LYCES (SWALL:P54767) (502 aa) fasta FT scores: E(): 1.7e-73, 45.24% id in 431 aa, and to Oryza FT sativa glutamate decarboxylase Gad SWALL:Q9AQU4 FT (EMBL:AB056062) (501 aa) fasta scores: E(): 2.1e-74, 45.47% FT id in 431 aa" FT /db_xref="PSEUDO:CAE36882.1" FT misc_feature complement(1686736..1687728) FT /note="HMMPfam hit to PF00282, Pyridoxal-dependent FT decarboxylase conserved domain, score 1.1e-37" FT CDS complement(1688206..1689939) FT /transl_table=11 FT /locus_tag="BPP1582" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3465 SWALL:Q9HYE1 (EMBL:AE004767) (571 aa) fasta FT scores: E(): 1e-126, 60.62% id in 574 aa, and to Rhizobium FT meliloti putative transport transmembrane protein R00235 or FT Smc02910 SWALL:Q92SW7 (EMBL:AL591783) (551 aa) fasta FT scores: E(): 5.8e-68, 38.94% id in 529 aa" FT /protein_id="CAE36883.1" FT /translation="MLQAPASAPEDLPRASAEAAPPPSRPGVLAPFGYPAFRMIWIANL FT FANLGIWAQSVAAAWIVTEAQSGPLIVAMIQVAAALPLVALSIVTGVVADNHDRRKVML FT VGMGLELVVGTLITALAFLGLLHPVTLIVAVFVVSIGSAIVTPAWQAAVSEQVPRQYVG FT NAVLLNSVNYNVARAIGPAIGGVLLGALGAPWVFLLNCFCYGALIWAIWRWRRETPPRT FT LPPERIYEGVVAALRFTEYSNVTRLVMMRAFSFGLSASALWALLPVLAHEHDNGSASLY FT GYMLGALGLGAIAGSLGIRTVQRRLGVSRLISVAAALLALGLIALGVTENLWVVFPALL FT LSGSCWIAVLATYNATVQLLVPDWVKARALTLYQTAIFGGLALGSFIWGHFAGSMGTRG FT AMAAAGVALLFTVALLYRSRLPDHVDDKCLSVLPRAALPAGQSDFDARHGVVLVSIEYR FT IAAERARAFIDAAGPLRLMRMRNGADQWQLFRDLEDAERWSEMFVVDSWLQYLRMNDRM FT TLADKMAIDAAQAFHSGPNPPQVTHAVSYISVSAAGGRGHAAPPAPAGPAQAAMGPVTA FT D" FT misc_feature complement(join(1688692..1688742,1688773..1688838, FT 1688878..1688943,1688956..1689021,1689043..1689099, FT 1689130..1689195,1689304..1689369,1689481..1689546, FT 1689568..1689633,1689664..1689729,1689751..1689816)) FT /note="11 probable transmembrane helices predicted for FT BPP1582 by TMHMM2.0 at aa 89-111, 118-140, 150-172, FT 179-201, 238-260, 296-318, 328-347, 354-376, 380-402, FT 415-437 and 447-464" FT CDS 1690130..1691674 FT /transl_table=11 FT /locus_tag="BPP1583" FT /product="putative membrane protein" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein Rsp1524 or Rs04801 SWALL:Q8XPW2 FT (EMBL:AL646085) (505 aa) fasta scores: E(): 5.5e-61, 39.96% FT id in 498 aa, and to Rhizobium loti two-component system FT histidine protein kinase Mll4698 SWALL:Q98DH8 FT (EMBL:AP003004) (535 aa) fasta scores: E(): 7.2e-20, 28.91% FT id in 505 aa" FT /protein_id="CAE36884.1" FT /translation="MALSRPARLLSRIGMVTALGIVAALGIVIAVASILAQDRQQVWER FT EARSARNVLQALAGEFERTVTAYDLVIRGVIGDLAQPAVAAMGPEALHRLLFQQGARPD FT NLAVLLVLDERGEVILDSRTAVVAPRNRSRRDYFQAHVDNPQAGLFISKPYRSRNRNGE FT LSIALSRRLAHPDGSFAGVVVAAVSLSYFRDRVVQLNVGPRGSMTLFRDDGIVISRKPY FT VEAQIGVDLSESANVSRFPREGRGAFVGTAILDGVERLYQFERVGKLPLIMVVALSTDD FT MMTPWRRHAWVLAGAVLLLCALLVALLAALERELRRRRNAEAELAQLARIDTLSGLLNR FT RAFAQVLALEWEAALRGRTPLALLLVDVDHFKAYYDCYGRSASDVLLRRVADAVRDCVP FT YAANVVARHGADEFVVLLPGMGLRSAAWLAERVRARVLGLAVPHRGNRGGVVSVSIGCT FT AMTPLAGSEAAVLVERADAALYLAKSRGRNRVERIGDPSTAGQGAEREMAQEPGGS" FT misc_feature 1690130..1690237 FT /note="Signal peptide predicted for BPP1583 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.677 between residues 36 and 37" FT misc_feature join(1690166..1690234,1690994..1691062) FT /note="2 probable transmembrane helices predicted for FT BPP1583 by TMHMM2.0 at aa 13-35 and 289-311" FT misc_feature 1691102..1691596 FT /note="HMMPfam hit to PF00990, GGDEF domain, score 1.2e-43" FT CDS 1691779..1692330 FT /transl_table=11 FT /locus_tag="BPP1584" FT /product="putative RNA polymerase sigma factor" FT /note="Similar to Rhizobium loti RNA polymerase sigma FT factor Mlr0407 SWALL:Q98MW7 (EMBL:AP002994) (183 aa) fasta FT scores: E(): 6.8e-32, 54.74% id in 179 aa, and to FT Agrobacterium tumefaciens Ecf family sigma factor PrtI or FT Atu1485 or Agr_c_2739 SWALL:AAL42491 (EMBL:AE009107) (168 FT aa) fasta scores: E(): 6.3e-17, 41.93% id in 155 aa" FT /protein_id="CAE36885.1" FT /translation="MTSDSPTFPVAAQLPALRAYARTLTRNPHDAEDLLQEALTRAYER FT RHTLRADGNLRAWLMAIVHNVFASEWRRRQAAPAQAAPLHDMEDAAAVAPPQEHSVRLA FT QIERAFMQLPDDQRAALHLVTIEGMAYQEAADALQIPIGTLMSRLGRARAALRRFEDGM FT GEAAADRRARFRIVGGRDAA" FT misc_feature 1691833..1692000 FT /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF FT subfamily), score 8.2e-13" FT CDS 1692335..1693126 FT /transl_table=11 FT /locus_tag="BPP1585" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT Mlr0408 SWALL:Q98MW6 (EMBL:AP002994) (257 aa) fasta scores: FT E(): 4.9e-19, 44.04% id in 252 aa, and to Agrobacterium FT tumefaciens transcriptional regulator PrtR or atu1484 or FT agr_c_2736 SWALL:Q8UFB4 (EMBL:AE009107) (258 aa) fasta FT scores: E(): 0.0097, 28.4% id in 264 aa" FT /protein_id="CAE36886.1" FT /translation="MTEIDLNAYVDGQLDPARRIEVEDFLSRHPEEAMRVMADLRQRDA FT LRWALGASQQAPADGADTPTAVHTRRLARRLERGLVRRGLDDRLRQAAAAVLLVAVGWA FT GHVGYAARYPDMRHVVAATAPSFVEDAVQAHRTAKVRAAMASQPRVPHLDADELLRATG FT VRVPALPASWAVRDVQVFPGRTGPSVEMEVEAAGLGRLWVFAAREPAHAAEAAPVVSRF FT QDAPIAYWQQGQWAYAITGDLPDAELGRAAGQMTVAMLATP" FT CDS 1693215..1693934 FT /transl_table=11 FT /locus_tag="BPP1586" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1170 SWALL:Q9I4G7 (EMBL:AE004547) (244 aa) fasta FT scores: E(): 2.3e-41, 52.54% id in 236 aa, and to Ralstonia FT solanacearum hypothetical transmembrane protein Rsc0556 or FT Rs04909 SWALL:Q8Y1Y1 (EMBL:AL646060) (232 aa) fasta scores: FT E(): 1.7e-33, 48.85% id in 219 aa" FT /protein_id="CAE36887.1" FT /translation="MLEFFQTLSWAAVFQIILIDILLGGDNAVVIALACRNLEPKQRMQ FT GILWGTAGAIGLRVVLIAFALTLLTVPYLKIVGALLLWVGVKLLIPEDDAHGNIKGGTS FT IAAAVKTIIIADFVMSLDNVIAIAGAAQGAAQEHQLGLVIFGLVVSVPIIIWGSTLVLK FT LIDRFPMVVTFGAALLGWIAGGMLVTDVVVVERFGEVSGVAKIAAEVAGALLIVGLGRW FT FARRKAAAAPQTARESA" FT misc_feature join(1693245..1693313,1693350..1693418,1693527..1693595, FT 1693632..1693700,1693728..1693796,1693815..1693883) FT /note="6 probable transmembrane helices predicted for FT BPP1586 by TMHMM2.0 at aa 22-44, 57-79, 116-138, 151-173, FT 183-205 and 212-234" FT CDS complement(1694113..1695324) FT /transl_table=11 FT /locus_tag="BPP1587" FT /product="probable two-component response regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT two-component response regulator Pa3947 SWALL:Q9HX69 FT (EMBL:AE004813) (392 aa) fasta scores: E(): 1.8e-57, 44.83% FT id in 397 aa, and to Ralstonia solanacearum probable FT two-component response regulator transcription regulator FT protein Rsc3387 or rs06101 SWALL:Q8XU07 (EMBL:AL646075) FT (403 aa) fasta scores: E(): 2e-26, 32.39% id in 392 aa" FT /protein_id="CAE36888.1" FT /translation="MNLPDILVVEDHPAHRLVVVHALRALGYTRILEAADGNEALRRLN FT EHGQVGIAICDIKMSGMDGAQFLRVAARRQLLGAVIISSDVSSDLIAAVLDMAALIGLR FT VLGDLAKPLDAQRLKALLDRHEAERQRARANAAPTASRQPPAPPAREVARALAAGQIVP FT YFQPKVDLLTLRPCGAEVLARWRHPDLGVLGPASFLEALKEQDLLDRLIWHLTDAALGQ FT ARLLATAGATQDLALNFETSQLGSAELLPTLAQALRKHALPASIVTIEVTENGLLDAPA FT ATLENLVRLRLMGCTVSIDDFGTGFSSMQRLCHLPFNQLKIDASFVRRLPGDARSESVV FT AATLAMAERLGITVVAEDIENPPQHQALLQLHCRQGQGYLFARPMSGPDYARWLDGAAS FT AAAG" FT misc_feature complement(1694158..1694883) FT /note="HMMPfam hit to PF00563, EAL domain, score 2.9e-72" FT misc_feature complement(1694935..1695315) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 5.6e-12" FT CDS 1695638..1696147 FT /transl_table=11 FT /locus_tag="BPP1588" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium leguminosarum hypothetical 14.7 FT kDa protein SWALL:Q9AE37 (EMBL:AJ310723) (135 aa) fasta FT scores: E(): 0.0057, 28.82% id in 111 aa, and to Rhizobium FT meliloti hypothetical protein R02424 or Smc01516 FT SWALL:Q92N19 (EMBL:AL591790) (137 aa) fasta scores: E(): FT 0.0024, 33.67% id in 98 aa" FT /protein_id="CAE36889.1" FT /translation="MVLRGALVAQTSALAWAREDRAALEASLPGLPRRRVLARRLDFLM FT ERVQSLLRARSGGTPGPALMVDASAKSVLCVGAGGAAARAARAAIERAGGRFLHHDGEV FT GDAAGLEASLVSADLVICQTGCVSHGAYWRVQDHCKRTGKQCVLVEQPAALNIVRVRRP FT ADAPQD" FT CDS 1696274..1697065 FT /transl_table=11 FT /locus_tag="BPP1589" FT /product="putative transmembrane regulator" FT /note="Similar to Pseudomonas fluorescens transmembrane FT regulator PrtR SWALL:Q9KIN0 (EMBL:AF228766) (242 aa) fasta FT scores: E(): 0.0013, 31.12% id in 241 aa, and to Rhizobium FT loti hypothetical protein Mlr0408 SWALL:Q98MW6 FT (EMBL:AP002994) (257 aa) fasta scores: E(): 2.1e-21, 39.04% FT id in 251 aa" FT /protein_id="CAE36890.1" FT /translation="MKGGPADPIADVELDAYIDGQLDSARRADVEAFLARDARAAARVS FT ADLRLRDALRQGATRHGAGARDAHTRALADRLQAAHARRRVARRARRLLAVAILVAAGW FT AGHAALTAWTPAEPAGDAGVQVFLDEAMRAHRTAQLRAGMRSQPAAPRLDRAELARQAG FT VPLPAWPWDWLPRDVQVFPSRGGPAVEVALLAGRAGPISLYGAPGGAGPDSAPRMARGA FT GAEALFWWRRGAWVYAVIGALPEAALRPLAQRLADAPLVHE" FT misc_feature 1696550..1696618 FT /note="1 probable transmembrane helix predicted for BPP1589 FT by TMHMM2.0 at aa 113-135" FT CDS 1697259..1697696 FT /transl_table=11 FT /locus_tag="BPP1590" FT /product="putative universal stress protein" FT /note="Similar to Brucella melitensis universal stress FT protein family Bmeii0245 SWALL:Q8YDD2 (EMBL:AE009663) (148 FT aa) fasta scores: E(): 3.2e-18, 46.3% id in 149 aa, and to FT Agrobacterium tumefaciens hypothetical protein Atu0496 or FT Agr_c_878 SWALL:Q8UI04 (EMBL:AE009019) (160 aa) fasta FT scores: E(): 9.1e-19, 48.96% id in 145 aa" FT /protein_id="CAE36891.1" FT /translation="MYQHILIPIDGSDLANTAIDKGLALAKALGARVTVLTVVEPYPHM FT AAEAVQLGGLRKEYEKQVHARASEWLEPAGAKAAAAGVPCELLKRDADMAFRAIVETAA FT ERGCDLIAMASHGRGGVAAVLLGSQTQKVLAHSQVPVLVYR" FT misc_feature 1697259..1697690 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00582, Universal stress protein FT family, score 7.4e-14" FT CDS 1697797..1698786 FT /transl_table=11 FT /gene="astE" FT /gene_synonym="aruE" FT /locus_tag="BPP1591" FT /product="putative succinylglutamate desuccinylase" FT /EC_number="3.1.-.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1176" FT /protein_id="CAE36892.1" FT /translation="MNTPTPVSTDYLRAHQFLGLQPGPRLLVLGAVHGNEVCGTRAIER FT ILAELESGALAITRGQLTLLPVTNPLAYRKGERQGDRNLNRNLRVCATPTDYEDRIGNA FT LCPLLQAHDVLLDLHSFHTGGQPFAMLGPRDNQEALEPFAHAREEARLVAHLGPRRVVE FT GWMQAYERGVRRRREQNPGAPAALLDAAYGVGSTEYFRAHGGYGVTLECGQHDDPAAPE FT VAYRAIRQTLALLGLADIALEPPRRDFETLCLVDVVDREADGDAFARPWASFDPVRQGE FT LVGTRADGRQVLAPRDGYVVFPNPRALAGNEWFYFAVASDRLGEDAGN" FT CDS 1698870..1699238 FT /transl_table=11 FT /locus_tag="BPP1592" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1175" FT /protein_id="CAE36893.1" FT /translation="MSKSIVLTLAAVALATQAGLAQAQYVGPSSNQQMSVKELLDTARD FT DAVVTLRGKLVKQLSDDTYLLDDGTGRVQVEIDRHLFPPNQPVDANTLVEVSGEFDKEV FT IGTSEVEVKALRILGAAK" FT misc_feature 1698870..1698938 FT /note="Signal peptide predicted for BPP1592 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.656 between residues 23 and 24" FT CDS complement(1699204..1699923) FT /transl_table=11 FT /locus_tag="BPP1593" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1174" FT /protein_id="CAE36894.1" FT /translation="MGRRARRPGSGRRFFGHGGYDPRHGDLIRLPLHFYKFPAAELPGA FT RPGPTLYRLASEHAMEIAALTWSTPLARLAPVPPRTSAAPPSHDWPHAAPSVRPHGAAG FT PAAAPADLLRDLHAQARMARAVAAYQAEQAARQTAARSPCAAQGLGDIDCLMVLQAYRV FT AMPMRRCRTCRECRPRRNAAARPWARSRGPALPISKYVDKSGSYRQKLRNNLKKRDAAC FT KQPTVAAIWPRRGCAAP" FT CDS 1699992..1701584 FT /transl_table=11 FT /locus_tag="BPP1594" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1172" FT /protein_id="CAE36895.1" FT /translation="MPMPFEWMTDPTAWLGLATLIVLEIVLGIDNLVFIAILADKLPAH FT QRNRARMIGLTLALLMRLGLLASIAWVVTLTAPLFTVWGAQISGRDLILILGGLFLLFK FT GTMELHERVEGNAHAGGGGRTQYAAFWQVIVQIVALDAVFSLDSVITAVGMVQDLSIMM FT TAVVVAMIVMMVASRPLMAFVARHPTVVILCLGLLLMIGFSLVAEGLGFDVPKGYLYAA FT IGFSILVEACNQLARRNLARGAHALGRRQRAAHAVLRLLQAGREGRAHPEEVAALVADT FT GEGPLFAPEESTMIERVLAMGERDVRSIMVPRADMVWLDVRDPRHVVLEKFALGHARLP FT LCAGDPGNVLGVVHLRDLLPRLSAPGPVDLVDAARPAAYVSETTPIPQLLQQMRDLRQH FT LLLVVDEHGVCVGLATPLDVLTAVAGELPDAGDADPPSASRLPDGGWSLDGRLAVEEVA FT RLLQAPDLRRDYPDATLAGCLLRASGAIPEEGQGMDWRQWRFEVERRVGPRIERVRATR FT RVEALADELAGPA" FT misc_feature join(1700034..1700102,1700148..1700216,1700229..1700297, FT 1700391..1700459,1700472..1700540,1700559..1700627) FT /note="6 probable transmembrane helices predicted for FT BPP1594 by TMHMM2.0 at aa 15-37, 53-75, 80-102, 134-156, FT 161-183 and 190-212" FT misc_feature 1700919..1701080 FT /note="HMMPfam hit to PF00571, CBS domain, score 1.9e-05" FT misc_feature 1701102..1701263 FT /note="HMMPfam hit to PF00571, CBS domain, score 1.9e-06" FT misc_feature 1701306..1701548 FT /note="HMMPfam hit to PF03471, Transporter associated FT domain, score 7.3e-11" FT CDS complement(1701599..1702177) FT /transl_table=11 FT /locus_tag="BPP1595" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1171" FT /protein_id="CAE36896.1" FT /translation="MSLIEIRKRTLIVETTYHENGPAPAQPLKLAASCAVIRNPYAGRY FT EPDLMPFMAELRSLGTLLATELVDTLGKDNIEVYSKAAIVGVDGEMEHGAVWHEAGGWA FT MRSVLGEPKAMVPAVKAVATAGYRMMVPVHYIHASYVRSHFNSIEIGIQDAPRPREILF FT ALVMGTGARVHARLGGLTKEAVSVHDGQR" FT CDS complement(1702202..1703155) FT /transl_table=11 FT /locus_tag="BPP1596" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1170" FT /protein_id="CAE36897.1" FT /translation="MFKPLFATAALALAIGQATAAYPERPIRMVVPFPPGSITDVVARS FT LGQGMAAELGQPVVVENKPGANGIIGTQDVVKAQPDGYTLVVVGVSTAASGVSLFKNLP FT YDPARDLTPIGAVAETPYLLVGGQDVAGKTVADLYDYGRQHPDKLTYAYGSGSAQVFGA FT KLAAMGDITVTPVPYRGGPQALTDVIGGTVDLTFTDLANGLQQARAGKVKVYGVSTPGR FT FALTPDIPTLNESGAPGFDLTVWFGLMGPAGLPPAVTERLAGALDKALAAPELTQTYAR FT QGLSVKTQGPAAFGAFVRSEIEKWAGIVKETGIAPQ" FT misc_feature complement(1702214..1703032) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 5e-82" FT misc_feature complement(1702754..1702777) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(1703096..1703155) FT /note="Signal peptide predicted for BPP1596 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.904 between residues 20 and 21" FT CDS complement(1703195..1704112) FT /transl_table=11 FT /locus_tag="BPP1597" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1169" FT /protein_id="CAE36898.1" FT /translation="MMQTLGFVGLGMMGLPMLENLAGDERWQILAYDRSPAPFERLAGH FT PAWGKRLRAAAGLQELAACDAVITMLPNSAITNAVVLGGDGQPGLIDLLESGAAIVDMG FT SSNPADTRLLSEQLAARGLTLIDAPVSGAVAKASTGTLAIMAGAAEADLRRVRPILERM FT GAAIIHTGAVGSAHAMKALNNYVYAAGLLAVSEAMVIARRMELDLEVFTDVLNASSGRN FT VASETKLRQFIIPGTYNGGFALALMAKDLGTAQSLQALTGVQADQLALCAELWRQALAQ FT LPGGADNTEIHRFLAQRTPATEPA" FT misc_feature complement(1703588..1704109) FT /note="HMMPfam hit to PF03446, NAD binding domain of FT 6-phosphogluconate dehydrogenase, score 1.1e-05" FT CDS join(1704234..1704932,1704935..1705162) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1598" FT /product="LysR-family transcriptional regulator FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1168" FT /db_xref="PSEUDO:CAE36899.1" FT misc_feature 1704267..1704446 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.5e-19" FT misc_feature join(1704516..1704932,1704935..1705138) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 3.9e-40" FT variation 1704933..1704934 FT /note="CG in parapertussis; (-) in pertussis" FT CDS complement(1705170..1705916) FT /transl_table=11 FT /locus_tag="BPP1599" FT /product="putative adolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1167" FT /protein_id="CAE36900.1" FT /translation="MPPSAPTDSARSLYQDTAVAALRDDLALALRAAAHHGLGEGVCNH FT FSVALPGQAGAFLLNPRGLMWSEVRAEDIVLVDAAGNKLAGRHEVEPTAMFIHAAIHQV FT AGKACVLHTHMPYATALTLTEARMLDTTLSQNAMRFHGRVAADRRYNGLALDAAEGERI FT ARAMDGADIAFLGNHGVVVCGERIDYAFDDLYYLERACCAQVLAESTGRPLVPVDAALA FT ASVAGQARSERLQSTLFFEALRRALG" FT misc_feature complement(1705212..1705859) FT /note="HMMPfam hit to PF00596, Class II Aldolase and FT Adducin N-terminal domain, score 8.8e-07" FT CDS 1706277..1707182 FT /transl_table=11 FT /gene="ldcA" FT /locus_tag="BPP1600" FT /product="putative muramoyltetrapeptide carboxypeptidase" FT /EC_number="3.4.17.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP1166" FT /protein_id="CAE36901.1" FT /translation="MAPASAIAGAADEAAEWLLERGYEPQVMPAARARLAPPFDYLAGD FT DAARLADLHAAFADPAVGAVWCLQGGFGSWRVLDQIDYGLLRRHAKPFIGYSDVTALHL FT AIQRYAGFVTFHGPMLAQDLLAGRQAPTEQALLDMVSGRLGAGSWIAAPPQARLATLAS FT GVATGRLIGGNLALLAALTGTRYAIDARDGILFFEDVNEALPRVDRMLAQLRRAGAFDG FT VRGVLVGSFTRLLGVPGDGEAAQAALYPLVREHFQARGIPVLAGWPSGHGDPNLTLPLG FT ARVTLDAGRGALRLEQPVAV" FT misc_feature 1706475..1707164 FT /note="HMMPfam hit to PF02016, Uncharacterized protein FT family UPF0094, score 1.5e-61" FT CDS complement(1707258..1707380) FT /transl_table=11 FT /locus_tag="BPP1601" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1165A" FT /protein_id="CAE36902.1" FT /translation="MLLTLYFLAWPVVSAAVLLVLIVTLWRDIRDARATGKSMI" FT misc_feature complement(1707303..1707368) FT /note="1 probable transmembrane helix predicted for BPP1601 FT by TMHMM2.0 at aa 4-26" FT CDS complement(1707409..1709307) FT /transl_table=11 FT /locus_tag="BPP1602" FT /product="sodium/solute symporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1165" FT /protein_id="CAE36903.1" FT /translation="MCLDACLTPDLADRDPVGRACDRAYVIDRPVFRSAMGNCRPSHFR FT GNGTHAAMNGESCAQRGKRTHKMQESEFFQLSGTTAVLLLVAFYGATFLMSLMIGQKKE FT NVDGYMVSNSSVGFGLSAASMIATWIWAASFYASATSGFKYGLSGPIHYGFWGALMILF FT IYPFGKRFRQLAPKAHTLAEVIHARHGASSQMIMAVSNIVGSCISLMVNFTAAGALVSV FT LSPLSFIQGVLIAGLGVLSYTLWSGFRASVMTDFAQLVAMILAAVIIIPLIFFNAGGPD FT MLQANMWRLSSEQADFFSTTAILEQGAPYFVAVLAYAIGNQTIAQRLFAVREDLIKPTF FT LTATIGYGAVVIGLGMLGLLALFVGLEPVNGNMNNIIPQMASTYLPPVGIALFFILVVG FT SLSSTADSDLAALSAIVMTDIYAKNLAGGRPDPRRMLWWGRATMIVATMVGVIFASLRL FT DILVMLVFVGALWGAIVFPVIASFYWDRVSNSAFFWSVISAVVLFTIVRFELVPIEGAV FT AVFYEICAAIGGGVVIGLMSFAFFGRVTALTLGTLATLFLLPCFVGTLREYIVLLGSLT FT AYGVSTVVCVALSLRNQERFDFSLLAERVTSFHYEKARMMGAKPAAPAAQPQPARG" FT misc_feature complement(join(1707538..1707603,1707619..1707669, FT 1707691..1707756,1707769..1707834,1707856..1707921, FT 1707934..1707999,1708114..1708179,1708225..1708290, FT 1708351..1708416,1708477..1708542,1708564..1708629, FT 1708648..1708713,1708807..1708872,1708903..1708968, FT 1709008..1709073)) FT /note="15 probable transmembrane helices predicted for FT BPP1602 by TMHMM2.0 at aa 78-100, 113-135, 145-167, FT 198-220, 226-248, 255-277, 297-319, 339-361, 376-398, FT 436-458, 462-484, 491-513, 517-539, 546-563 and 568-590" FT misc_feature complement(1707811..1708983) FT /note="HMMPfam hit to PF00474, Sodium:solute symporter FT family, score 1.5e-06" FT CDS complement(1709541..1710986) FT /transl_table=11 FT /locus_tag="BPP1603" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1164" FT /protein_id="CAE36904.1" FT /translation="MPPSRHLPPITALLSFRLNQLAQAGAGLPHPTRAIAVAAILINVF FT MATLESAIANTALPAIAADLGVSEASSIWVISAYHLAMVAALLPIASLGEIIGHRRISM FT AGLVLFTLASLACGLAPSLPWLIAGRLAQGVGAAGILGVALAMTRFVYPREQLGCGLGL FT NALVVSLSLAAGPTAASLILSLGSWHWLFLINVPLGLALGVCALPPTPRSARRYDAVAG FT LLCALFLALLVYTLNAYAHDVGAGGNTAYALATLAMLALLLRRQSGRGAPMLATDLLRR FT PIFALSAAATLGAFAAQTLAFVALPFMLQSLLGYTQVQTGFLITPWPALAALSAASAGA FT LSDRHPPGLLGGIGMAVLAAGLLSLVALPAAPDAFDLGWRMALCGAGFGFFQAPNMRAM FT LADAPPERSGGASGMTSSSIMLGQSLGAALVAGLFTLRGAAAAPAALWLGVAFAVIAGI FT ASLLRLRHAAAAGAGARLDLTRV" FT misc_feature complement(join(1709601..1709666,1709874..1709939, FT 1709961..1710026,1710072..1710137,1710198..1710254, FT 1710270..1710326,1710363..1710428,1710441..1710506, FT 1710528..1710593,1710606..1710671,1710693..1710758, FT 1710804..1710869)) FT /note="12 probable transmembrane helices predicted for FT BPP1603 by TMHMM2.0 at aa 39-61, 76-98, 105-127, 131-153, FT 160-182, 186-208, 220-239, 244-263, 283-305, 320-342, FT 349-371 and 440-462" FT misc_feature complement(1710915..1710986) FT /note="Signal peptide predicted for BPP1603 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.798) with cleavage site FT probability 0.491 between residues 24 and 25" FT CDS complement(1711140..1712048) FT /transl_table=11 FT /locus_tag="BPP1604" FT /product="probable short-chain dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1163" FT /protein_id="CAE36905.1" FT /translation="MTGAAPTILPAVPARGDDRPALAGENVPRIEPTPANLATGARSMN FT QVATQSSLAGRTALVTGASRGIGRAIALALGRCGATVAVHYNAAREQADEVVQAIGAAG FT GRAWALRADLAHPDGAGALARDLRASLREQTGDEGLDILVNNAGVSLRARLPEVSPQDF FT DRIIQVNLKTPFFLIQHLLPLLRDGGRIVNVSSMGTRAAYPEMSVYAPAKAGLEALTLL FT LASDLGARGITVNAVLPGATATDMNTRARDPAMADALARDIALGRVGQPEDIADIVAFL FT ASDQARWITGQRIDATGGQRL" FT misc_feature complement(1711149..1711889) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 2.7e-71" FT CDS complement(1712045..1712929) FT /transl_table=11 FT /locus_tag="BPP1605" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1162" FT /protein_id="CAE36906.1" FT /translation="MFMDMRFLHSFVTVAESGSIADAARRLGLAPTTLAQQIRALEADL FT GSRLLTRAGRTVRPTVAGARIVDRARELLRGERDLRSAASDTGLPAGPMRLGATPTALM FT GLVPPLLRRWMRAHPDIQIYIEPGTSSVLLERVMAGQLDAAILVHPNFELHKTCAWSLI FT REERLVLLAPSALRVGNALRVAAREPFIQYDRKVVAGKMADEYLRAHGVRPKVQFELDG FT IEHISALVAEGFGVSVLPDWPTLGPADARVRRWPLPDPCPSRQVGMVWLRSSVRSPLAQ FT AFHAYLGAAAGAP" FT misc_feature complement(1712054..1712671) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 8.3e-40" FT misc_feature complement(1712738..1712917) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.1e-17" FT misc_feature complement(1712783..1712875) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 1713029..1714153 FT /transl_table=11 FT /locus_tag="BPP1606" FT /product="putative racemase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1161" FT /protein_id="CAE36907.1" FT /translation="MAIIKSIEVCVARVPMDKVTYLSNRTVVDRHYGLVKVRSADGVEG FT IGFCYVGNQAGEIFRVAVEQLLGPVLIGRDSLAVEGLWREMYQEALLQGRMGTVMRALS FT ALDIALWDLNARAANLPLHKYLGAVELDSVAAYASGGYYVEGKTAGQLGEEMASYVELG FT FKAVKMKTGRWSPQGEQSRVRAAREAIGEDVELMLDCNNGWVDTVQAMEYLRRMEPYNP FT YFIEEPFSPDDVESHARLARLTRIPVATAEIGYGRWYHKQLLDMGAAAILQTDAAVCGG FT ITEWKRIAAMAAGYGIQMCPHWFHDVHAPLAAATPNARYVEFFWDDQVLNFRRLVDRQL FT EHKDGRVILHQTPGLGFGFDENAVARYGRWTTES" FT misc_feature 1713041..1713409 FT /note="HMMPfam hit to PF02746, Mandelate racemase / FT muconate lactonizing enzyme, N-terminal domain, score FT 7.6e-19" FT misc_feature 1713245..1713286 FT /note="PS00213 Lipocalin signature." FT misc_feature 1713422..1714132 FT /note="HMMPfam hit to PF01188, Mandelate racemase / FT muconate lactonizing enzyme, C-terminal domain, score FT 2.7e-23" FT misc_feature 1713449..1713472 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 1714199..1715164 FT /transl_table=11 FT /locus_tag="BPP1607" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1160" FT /protein_id="CAE36908.1" FT /translation="MMKLRAACALAAALACGAVLAQDLGGKPLTLVVPFAPGGNADIVA FT RSYAVPMARLIGATVVVDNRGGGGGGAIGTAIVAKAPADGSTLLSATPGQLGTLPHMFK FT TGYKSADFVPVGVVSKTSIALVVKHDDARFKTTEEFIAYARRNPGRLNVGHAGPGSPNH FT LAMLQFENATGTRFTPIAYKGSGPALIDLLSGQIDVIFDQVSSSLPHLKAGKLSALLIL FT GPTRDPSIGQVRTLKEAGLPEFDASTYIGVLAPKGVPAETVAKLTSVIRQVADDPAFDS FT KLREIGSGAFYADPADFARILQADEDLAKAMIQQGRLIDG" FT misc_feature 1714199..1714261 FT /note="Signal peptide predicted for BPP1607 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 21 and 22" FT misc_feature 1714214..1714246 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 1714328..1715152 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 6.6e-65" FT CDS 1715157..1716011 FT /transl_table=11 FT /locus_tag="BPP1608" FT /product="putative 2-pyrone-4,6-dicarboxylic acid FT hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1159" FT /protein_id="CAE36909.1" FT /translation="MVERARLAEGGGWDCHFHVFDASRYTLAAGSAYQPEDASLAAFRG FT VCRARGIGRAVLVHPSVYGADHSSYEDALAANGDWLRGVAVVYPDEATTPDARIEHWDL FT LGTAGTRINRLFPGAPQHPERIVERVKPFGWHVQVLTDIVEDIGLVRRIAARDVPVVVD FT HFGHHPHAQLLRSAGWQDLLALVREGAAWVKLSAPYRVGAQGPAWPGAQALVDQLVQAN FT PRQLVWGSDWPHPPDHRHPFPAPDQAAIGATIAQWLPDAQLRRQVMELNPLRLYGGTRA FT AGR" FT CDS 1716117..1716527 FT /transl_table=11 FT /locus_tag="BPP1609" FT /product="putative dioxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1158" FT /protein_id="CAE36910.1" FT /translation="MFSHVTVGVSDLARAGRFYDALLQPLGLRQRQTQPDGGPPSLCWV FT RAGTSLPRFFAYMPFNGRPPSPGNGAMVAFLAQTPEQVDRAHAAGLAAGGSDEGAPGPR FT ARYGPGYYGAYLRDPDGNKLHVVHRSGPAAAG" FT CDS complement(1716524..1717474) FT /transl_table=11 FT /locus_tag="BPP1610" FT /product="transposase for IS1002" FT /note="transposase for IS1002 element" FT /protein_id="CAE36911.1" FT /translation="MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKW FT LARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVA FT RYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNR FT GIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSG FT YVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQ FT PFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDT" FT repeat_region 1716524..1716552 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1002 element" FT repeat_region complement(1716524..1717564) FT /note="IS1002 insertion sequence" FT misc_feature complement(1716557..1717093) FT /note="HMMPfam hit to PF00665, Integrase core domain, score FT 6.8e-30" FT repeat_region complement(1717536..1717564) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1002 element" FT CDS complement(1717561..1717899) FT /transl_table=11 FT /gene="csaA" FT /locus_tag="BPP1611" FT /product="protein secretion chaperone" FT /note="Similar to Bacillus subtilis CsaA protein FT SWALL:CSAA_BACSU (SWALL:P37584) (110 aa) fasta scores: E(): FT 1.1e-19, 53.15% id in 111 aa, and to Brucella melitensis FT protein secretion chaperonin CsaA Bmei0491 SWALL:Q8YIF3 FT (EMBL:AE009491) (115 aa) fasta scores: E(): 1.4e-24, 58.71% FT id in 109 aa" FT /protein_id="CAE36912.1" FT /translation="MQLIDWTDFAKVELRVGRIVQALPFPEARKPAYILHVDFGAEIGV FT KKSSAQVTHLYQPETLLGRLVVAVVNFPKKQIGPLQSECLVTGFHNAQGEVALCVPDRD FT VPLGTKLL" FT misc_feature complement(1717570..1717860) FT /note="HMMPfam hit to PF01588, Putative tRNA binding FT domain, score 2.4e-15" FT CDS 1718289..1719863 FT /transl_table=11 FT /locus_tag="BPP1612" FT /product="putative membrane protein" FT /note="Similar to Brucella melitensis Rtn protein Bmeii0904 FT SWALL:Q8YBJ6 (EMBL:AE009724) (530 aa) fasta scores: E(): FT 2.3e-43, 31.21% id in 519 aa, and to Xylella fastidiosa FT hypothetical protein Xf0470 SWALL:Q9PG32 (EMBL:AE003897) FT (530 aa) fasta scores: E(): 3.6e-41, 31.55% id in 526 aa" FT /protein_id="CAE36913.1" FT /translation="MYFPLRKALLTGLWTAAALGAVIGPSLLAVDMVREYGLRQQREQA FT QVLAQRLLGRIGLTADRLLRIHRELVHTGGSSPCAPYSTYLMQQQVLRFPDVRAVAYVE FT EGRVLCSSLGDTVTGVDLGPSDFTTGNRISVWNSAVLPAAPETPFRVFAKEGYAIIMER FT ESTNQLGGAVPQAMAAVSFSGTPDDAIVWGELPRAWFKRARESNAFVDDKYVVAVQRST FT AQGLVALGAVASSQGAEALQRLAILLVPLSAAAGLGLLVGAVILARRQFSLPQLIRSGL FT RRNEFYMVYQPMVEVGTGRCVGAEALIRWRRRNGDLIAPDVFIDEAERVGLIGKITERV FT FELVSSDVQRWRGRLGDLYISINVSAADMASGAAERLLSEMFARTGLTPSQVVVELTER FT ALLHSDEAVAAIKIIRKMGGRVAIDDFGTGYSSLAYLTSFEVDGLKIDKRFVDAIGRDA FT PSSSVSVHIIEMAKSLGLRVVAEGVETAGQQRFLSEHGVDYAQGWLFGRPMPLNELLAM FT ARRPPPG" FT misc_feature join(1718310..1718378,1719018..1719086) FT /note="2 probable transmembrane helices predicted for FT BPP1612 by TMHMM2.0 at aa 91-113 and 327-349" FT misc_feature 1719093..1719827 FT /note="HMMPfam hit to PF00563, EAL domain, score 1.3e-94" FT CDS 1720023..1721681 FT /transl_table=11 FT /locus_tag="BPP1613" FT /product="probable methyl-accepting chemotaxis protein" FT /note="Similar to Ralstonia solanacearum probable FT methyl-accepting chemotaxis transducer transmembrane FT protein Rsp0255 or Rs03711 SWALL:Q8XT60 (EMBL:AL646077) FT (529 aa) fasta scores: E(): 1.7e-67, 44.15% id in 530 aa, FT and to Yersinia pestis putative methyl-accepting chemotaxis FT protein Ypo1644 SWALL:Q8ZFP9 (EMBL:AJ414149) (526 aa) fasta FT scores: E(): 1.4e-56, 40.78% id in 532 aa" FT /protein_id="CAE36914.1" FT /translation="MRRNLPVTGHEFVLQDDQYLISKTDLKGRITYCNPAFIAISGFSR FT EELLGQPHNIVRHPDMPEDVFADMWATLQARKPWLAVVKNRHKSGGFYWVLANAMPVIE FT AGNVTGYASVRVKATQAQIEAAEHFYAQVESGRMGGHGLRHGQRVPRGWRRAARALAFP FT LRKGVRPALLRLAAAMCGLAAIPTYFAIGAMPPEAAPYGWGAYALGALGAVLAAMALGG FT RFGRQLRNAEEVARQIAAGNLVNEVDSGVGGEMRNLYFYLDIMRKSLIGISTEVIGKTS FT EHVHTISRLREDSQGLAARTEAQSAALQDTASSVEQLAETVTRNAESAGVAARLTQESS FT EVAAQGGAVVGELVATMQGLDASSRKMAEIVSVIEGIAFQTNILALNAAVEAARAGEQG FT KGFAVVAAEVRSLAQRTAQAAKEVKVLIDDSVGRMSTGSAQAGRAGETMRELVQSVERV FT TALMAEISTASGEQSTGVAQISSAVHRMEEVVQQNVSMVGELTHVAEHLGQESGSLVEA FT IGVFRTPGAGARAIGMPEQAPRRAPARTLLLAEHP" FT misc_feature join(1720530..1720598,1720617..1720685) FT /note="2 probable transmembrane helices predicted for FT BPP1613 by TMHMM2.0 at aa 203-225 and 232-254" FT misc_feature 1720629..1720835 FT /note="HMMPfam hit to PF00672, HAMP domain, score 0.00016" FT misc_feature 1720896..1721594 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain, score 1.8e-75" FT CDS 1722030..1723457 FT /transl_table=11 FT /locus_tag="BPP1614" FT /product="putative membrane protein" FT /note="The C-terminal region of this CDS is similar to the FT C-terminal regions of many including Ralstonia solanacearum FT probable transmembrane protein Rsc0375 or Rs03343 FT SWALL:Q8Y2G1 (EMBL:AL646058) (972 aa) fasta scores: E(): FT 3.7e-20, 34.85% id in 307 aa, and to Anabaena sp. FT hypothetical protein Alr3170 SWALL:Q8YSB9 (EMBL:AP003592) FT (1021 aa) fasta scores: E(): 9.4e-20, 30.6% id in 366 aa" FT /protein_id="CAE36915.1" FT /translation="MAISDANRGGAPGAAPGPDPAHILHELAGLMAISPGRDFLDELVN FT RAVQRLGVDYAWVVLHGAKGEHARTVLSANCRMRWNGAESYLATGQSALAGVLSHATQY FT VCARDLERHVPGDLALRRLGAQACVAHALRDESGLQRGHVAFVFSEPLADPAIYVSALS FT ACAAFTERAVLALDAERKARQEALQLASRYQALFEKAPVLINAFDARGKCILWNLECER FT KFGWSMEEVNNHPEPLALFYPDPQTRARVVASVSQAPGRAFEEWHPVTRAGKVLSTLWS FT NIVLESGTIVNIGLDITERKRAELALTRLATIDSLTDCWNRAEILKILRQEITRLRQHP FT DQPLAVVMLDLDHFKQLNDLHGHLVGDAALRYFSDQLRSNLRGTDFVGRIGGEEFLALL FT PGCDGDAALAMADRLRAALRNDPFTTEGQAAPLSVSVGIAFATPEDTAVSDVMRRADTA FT LYEAKRRGRDRAVVYFG" FT misc_feature 1722948..1723436 FT /note="HMMPfam hit to PF00990, GGDEF domain, score 1.2e-60" FT CDS 1723525..1724496 FT /transl_table=11 FT /locus_tag="BPP1615" FT /product="putative membrane protein" FT /note="Similar to Streptomyces coelicolor putative membrane FT transport protein Sc8f11.16C SWALL:Q9KZG2 (EMBL:AL353864) FT (325 aa) fasta scores: E(): 6.2e-07, 30.03% id in 293 aa, FT and to Pseudomonas aeruginosa probable Mfs transporter FT Pa2701 SWALL:Q9I0E1 (EMBL:AE004698) (529 aa) fasta scores: FT E(): 0.0055, 34.35% id in 195 aa" FT /protein_id="CAE36916.1" FT /translation="MQRLQASLERRQVGIYFAAMALGAVLAWHRPGLQVGEATLNLMLA FT GMLLATFMQVPLAGWRATLPGMRFLGVLLSVNFVLVPALVWGLAALLPADPMIRLAVLL FT VLLAPCIDYVVTFAQLGRADARALLAATPVLLCGQMLLLPLYLNVMLGSDAAALIRPGP FT FVQAFVWLIALPLAAATGVQWAAARSAAWRGAASVVGLLPVPATALVLATIVAAVAPRM FT ALAGEAVSRVVPVYLLFAVIAPAAGWLAARRARLAAPQARAVAFSAGTRNSLVVLPLAL FT AVPGGVPLLPALIVAQTLVELCAELLYVRVFGRAGKDRAGEG" FT misc_feature join(1723561..1723620,1723648..1723716,1723729..1723797, FT 1723810..1723878,1723897..1723965,1724008..1724076, FT 1724113..1724181,1724209..1724277,1724338..1724406) FT /note="9 probable transmembrane helices predicted for FT BPP1615 by TMHMM2.0 at aa 13-32, 42-64, 69-91, 96-118, FT 125-147, 162-184, 197-219, 229-251 and 272-294" FT CDS complement(1724509..1724814) FT /transl_table=11 FT /locus_tag="BPP1616" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE36917.1" FT /translation="MPAKDVPYQSMNLLCAILPEGNTSNRVGRRLADLLVQDAQGRLYR FT VERHRIEGGHPDLVCGIDYIYCRLAGGGVVRCIDEQTYELPDGTVAHVVPDSTLRS" FT CDS 1725708..1727183 FT /transl_table=11 FT /locus_tag="BPP1617" FT /product="autotransporter" FT /protein_id="CAE36918.1" FT /translation="MNPFHHAPRRRAAHIHVLLLSMSALLWLPAAQAQYWSPGAQAGPH FT NVGTDGVFDEDEEPGPRPRPPLPKEDLEALEDLFGSGDTPPEPPPAPPSPGPMAPNVPE FT DASPHLPDHAGGDAMPPASPPAPPEARPKQPEARPEALPEAPPQAQPEAPPVVPPPAEP FT PAARPPAVPPARPAGDAVYLPGTRTLTPTANAAVGTASAAQGLWQAEMNALGKRMGELR FT LTPAAGGVWGRAFTQRQKLDNGVAREFRQTVGGFELGADTALAAAEGRWHVGAVAGYSQ FT GSLKFRHGGTGDDDSVHVGAYATYIGNSGFYLDGIVRVSRFSHEFKVHDTQGRRVRGQY FT RGNGVGASLELGKRFTWPGAWYVEPQLEVAAFRAQGADYTASNGLRIKDDGTNSMLGRL FT GLHVGRQFDLGDGRVVQPYMKLSWLQEFDGKNTVRTNGVRHKNRLDGGRAELDLGVAAQ FT LGKHGSLYGSYEYAKGSRQTMPWTFHIGYRYTW" FT misc_feature 1725963..1727177 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03212, Pertactin, score 2e-173" FT CDS 1727612..1729171 FT /transl_table=11 FT /locus_tag="BPP1618" FT /product="autotransporter" FT /protein_id="CAE36919.1" FT /translation="MNRATPCRGAVRALALALLGAGMWTLSPASTWALELPPPLTDEEL FT RLVLPTGGMSLDDFKRGLEQAAPGSVATPAPPLPKVPVPGPAPGASPGAGSSPPGGSDV FT PGGASSSPGEKPPAVADQGKGQGNGAGGGQPPQAGAGGANGLPPGGADPKPPAAAGGDA FT GPKPPEGDGGDEGPQRPQGGGEQGGGEQDAPEVPPVAPAPPADNGVYEPGTHTLSAPAS FT AAVSLASSSHGVWQAEMNALSKRMGELRLTPVAGGVWGRAFGRRQDVDNRVAREFRQTI FT SGFELGADTALPVADGRWHVGAVAGYTNGRIKFDRGGTGDDDSVHVGAYATYIEDGGFY FT MDGIVRVSRIRHAFKVDDAKGRRVRGQYRGNGVGASLELGKRFTWPGAWYVEPQLEVAA FT FRAQGADYTASNGLRIKDDGTNSMLGRLGLHVGRQFDLGDGRVVQPYMKLSWVQEFDGK FT GTVRTNGVRHKNRLDGGRAELDLGVAAQLGKHGSLYGSYEYAKGSRQTMPWTFHIGYRY FT AW" FT misc_feature 1727612..1727710 FT /note="Signal peptide predicted for BPP1618 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.983 between residues 33 and 34" FT misc_feature 1727984..1729165 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03212, Pertactin, score 2.5e-195" FT CDS 1729465..1729686 FT /transl_table=11 FT /locus_tag="BPP1619" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0892" FT /protein_id="CAE36920.1" FT /translation="MGDVMQRGELAHWLNVVAENGEPGAPQIPVPEQFVTALTTLRCIE FT RNAQGQLVVTEKGRLALHMEEPGALHRQ" FT CDS 1729819..1730058 FT