ID BX470248; SV 1; circular; genomic DNA; CON; PRO; 4086189 BP. XX AC BX470248; XX PR Project:PRJNA26; XX DT 09-AUG-2003 (Rel. 76, Created) DT 13-MAY-2009 (Rel. 100, Last updated, Version 6) XX DE Bordetella pertussis strain Tohama I, complete genome XX KW complete genome. XX OS Bordetella pertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-4086189 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the INSDC. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat Genet 35(1):0-0(2003). XX DR ENA; ERS000054. DR GR; BX470248_GR. XX CO join(BX640411.1:1..346359,BX640412.1:51..348171,BX640413.1:51..349028, CO BX640414.1:51..343243,BX640415.1:51..347071,BX640416.1:51..349354, CO BX640417.1:51..348934,BX640418.1:51..349346,BX640419.1:51..349672, CO BX640420.1:51..348134,BX640421.1:51..349726,BX640422.1:51..257701) XX FH Key Location/Qualifiers FH FT source 1..4086189 FT /organism="Bordetella pertussis" FT /strain="Tohama I" FT /mol_type="genomic DNA" FT /db_xref="taxon:520" FT CDS 1..1920 FT /transl_table=11 FT /gene="gidA" FT /locus_tag="BP0001" FT /product="glucose inhibited division protein A" FT /note="Similar to Escherichia coli glucose inhibited FT division protein A GidA or B3741 SW:GIDA_ECOLI (P17112) FT (629 aa) fasta scores: E(): 2.9e-164, 68.680% id in 629 aa" FT /protein_id="CAE40381.1" FT /translation="MDFPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQM FT SCNPSIGGIGKGHLVKEVDALGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLY FT RNAIRAQLENQPNLWLFQQAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLI FT HVGLQNYSGGRAGDPPANSLGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDL FT DPVPVFSFLGKASMHPRQLPCWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSI FT EDKIHRFADKASHQVFLEPEGLNTHEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRP FT GYAIEYDYFDPRALKSTLETKAISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGK FT EPWVPRRDEAYLGVLVDDLVTRGVTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGL FT VDDVRWDAFSRKRDAVAQEVERLKSTWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRP FT NVSYEALMQARTDEGELLAGPGVLEDQVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQ FT PIPADIDYDAVTSLSFEVRQKLKTHRPETIGQAARVSGVTPAAISLLLIHLKRLHYGSR FT KQAA" FT misc_feature 19..1893 FT /note="HMMPfam hit to PF01134, Glucose inhibited division FT protein A" FT misc_feature 820..864 FT /note="ScanRegExp hit to PS01280, Glucose inhibited FT division protein A family signature 1. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 1810..1875 FT /note="Predicted helix-turn-helix motif with score 1129 FT (+3.03 SD) at aa 604-625, sequence ETIGQAARVSGVTPAAISLLLI" FT CDS 1917..2609 FT /transl_table=11 FT /gene="gidB" FT /locus_tag="BP0002" FT /product="glucose inhibited division protein B" FT /note="Similar to Pseudomonas putida glucose inhibited FT division protein B GidB SW:GIDB_PSEPU (P25757) (216 aa) FT fasta scores: E(): 1e-24, 42.593% id in 216 aa, and to FT Escherichia coli glucose inhibited division protein B GidB FT or B3740 or Z5240 or Ecs4682 SW:GIDB_ECOLI (P17113) (207 FT aa) fasta scores: E(): 1.2e-12, 39.000% id in 200 aa" FT /protein_id="CAE40382.1" FT /translation="MSAVPDIPGGPAQRLAQACDALRLPADAGQQQKLLRYIEQMQRWN FT RTYNLTAIRDPGQMLVQHLFDSLSVVAPLERGLPAAGSGARVKLFDVGSGGGLPGVVLA FT IMRAHWDVTCVDAVEKKTAFVRQMAGALGLPNLQAAHTRIEQLEPAQCDVVISRAFASL FT QDFAKLAGRHVREGGTLVAMKGKVPDDEIQALQQHGHWTVERIEPLVVPALDAQRCLIW FT MRRSQGNI" FT misc_feature 1917..2135 FT /note="ScanRegExp hit to PS00430, TonB-dependent receptor FT proteins signature 1." FT misc_feature 2004..2579 FT /note="HMMPfam hit to PF02527, Glucose inhibited division FT protein" FT CDS 2606..3403 FT /transl_table=11 FT /gene="parA" FT /gene_synonym="soj" FT /locus_tag="BP0003" FT /product="ParA family protein" FT /note="Similar to Caulobacter crescentus chromosome FT partitioning protein ParA or Cc3753 SW:PARA_CAUCR (O05189) FT (267 aa) fasta scores: E(): 1.9e-46, 49.412% id in 255 aa, FT and to Bacillus subtilis sporulation initiation inhibitor FT protein Soj SW:SOJ_BACSU (P37522) (253 aa) fasta scores: FT E(): 2.7e-44, 48.988% id in 247 aa" FT /protein_id="CAE40383.1" FT /translation="MKNIPPSKSARVFCIANQKGGVGKTTTAINLAAGLATHKQRVLLV FT DLDPQGNATMGSGIDKSTLESNLYQVLIGEAGIEQTRVRSESGGYDVLPANRELSGAEI FT DLVQMDERERQLKAAIDKIAGEYDFVLIDCPPTLSLLTLNGLAAAHGVIIPMQCEYFAL FT EGLSDLVNTIKRVHRNINNELRVIGLLRVMFDPRMTLQQQVSAQLESHFGDKVFTTVVP FT RNVRLAEAPSYGMPGVVYDRASRGAQAYIAFGAEMIERVKELD" FT misc_feature 2879..3214 FT /note="HMMPfam hit to PF00991, ParA family ATPase" FT CDS 3410..4171 FT /transl_table=11 FT /locus_tag="BP0004" FT /product="Putative acetyltransferase, GnaT family" FT /note="Similar to Caulobacter crescentus acetyltransferase, FT GnaT family Cc2209 TR:Q9A685 (EMBL:AE005892) (207 aa) fasta FT scores: E(): 1.8e-07, 34.653% id in 202 aa, and to FT Rhizobium meliloti putative acetyltransferase protein FT Smc02449 TR:CAC47203 (EMBL:AL591791) (308 aa) fasta scores: FT E(): 6.1e-05, 31.818% id in 242 aa" FT /protein_id="CAE40384.1" FT /translation="MPAVLAVPAAHPAPAAGGELARLEEAALNATTVREQMLYEGWLVR FT WAPSRAKRARCVNVLGLSTRPLDERLAYCTRWYAGHGVPLIVRLTSIGPDFSLDAQLHE FT RGFVAFDRTCVMAASVVPFTAQAPSGLVFERTTPGRFAQEAGRLQAAPLENLPLLVRDA FT SGECIAAGLAAFDAELVGLFDIVTAPQRRRQGCGAAVLKYLLEQASHAGARQAYLQVEP FT QNTAARALYARFGFVDRYTYWYRSMSEATPV" FT misc_feature 3884..4120 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT CDS 4215..5132 FT /transl_table=11 FT /gene="parB" FT /locus_tag="BP0005" FT /product="probable chromosome partitioning protein ParB" FT /note="Similar to Pseudomonas putida probable chromosome FT partitioning protein ParB SW:PARB_PSEPU (P31857) (290 aa) FT fasta scores: E(): 3.9e-40, 48.136% id in 295 aa" FT /protein_id="CAE40385.1" FT /translation="MVTKKPKGLGRGLDALLGADVPAIDNIGKAPAAAPEGPPATLPVS FT KMRAGKYQPRTRMDEGALNELAESIRTQGIMQPILVRALGADAPGQYEIIVGERRFRAA FT QLAGLKEVPVLVREVADENAAVMALIENIQREDLNPLEEAHGVRRLLDEFGLTHEQAAQ FT AIGRSRSATSNLLRLLNLAAPVQTMLLAGDVDMGHARALLAVDAATQIQLANQVIAKRL FT SVREAEKLVARAQKDVDAAPRKKGNGASRDVTRLEEALSDHLGTRVALKVGAREKGQIV FT IDFHGWEHLNSLLERQGLSGVVDA" FT misc_feature 4332..4613 FT /note="HMMPfam hit to PF02195, ParB-like nuclease domain" FT misc_feature 4680..4745 FT /note="Predicted helix-turn-helix motif with score 1537 FT (+4.42 SD) at aa 156-177, sequence LTHEQAAQAIGRSRSATSNLLR" FT CDS join(5125..5907,5911..6126) FT /pseudo FT /transl_table=11 FT /gene="ansB" FT /locus_tag="BP0006" FT /product="L-asparaginase II precursor (pseudogene)" FT /EC_number="3.5.1.1" FT /note="Pseudogene. Contains an in-frame stop codon. The FT sequence has been checked and believed to be correct. FT Similar to Escherichia coli L-asparaginase II precursor FT AnsB or B2957 SW:ASG2_ECOLI (P00805) (348 aa) fasta scores: FT E(): 2.7e-44, 46.224% id in 331 aa" FT /db_xref="PSEUDO:CAE40386.1" FT misc_feature 5155..5181 FT /note="ScanRegExp hit to PS00144, Asparaginase / FT glutaminase active site signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature join(5173..5907,5911..6108) FT /note="HMMPfam hit to PF00710, Asparaginase" FT misc_feature 5389..5421 FT /note="ScanRegExp hit to PS00917, Asparaginase / FT glutaminase active site signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT variation 5908..5910 FT /note="inframe TAG stop; CAG in parapertussis" FT tRNA 6236..6322 FT /note="tRNA Tyr anticodon GTA, Cove score 72.20" FT tRNA 6511..6584 FT /note="tRNA Gly anticodon TCC, Cove score 82.17" FT tRNA 6591..6665 FT /note="tRNA Thr anticodon GGT, Cove score 86.85" FT CDS 6722..7912 FT /transl_table=11 FT /gene="tufA" FT /gene_synonym="tuf" FT /locus_tag="BP0007" FT /product="elongation factor Tu" FT /note="Similar to Burkholderia cepacia elongation factor Tu FT Tuf SW:EFTU_BURCE (P33167) (396 aa) fasta scores: E(): FT 2.4e-139, 92.658% id in 395 aa, and to Escherichia coli FT elongation factor Tu TufA TR:AAA50993 (EMBL:J01690) (394 FT aa) fasta scores: E(): 3e-123, 81.519% id in 395 aa. FT Identical to BP3611, 100.000% identity (100.000% ungapped) FT in 396 aa overlap" FT /protein_id="CAE40387.1" FT /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEAR FT GYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDF FT PGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFS FT ISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILL FT RGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDV FT TGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK" FT misc_feature 6749..7849 FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT misc_feature 6776..6799 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 6872..6919 FT /note="ScanRegExp hit to PS00301, GTP-binding elongation FT factors signature. Confirmed by InterPro eMOTIF pattern FT match." FT tRNA 8023..8098 FT /note="tRNA Trp anticodon CCA, Cove score 85.26" FT CDS 8151..8531 FT /transl_table=11 FT /gene="secE" FT /gene_synonym="prlG" FT /locus_tag="BP0008" FT /product="preprotein translocase SecE subunit" FT /note="Similar to Escherichia coli preprotein translocase FT SecE subunit SecE or PrlG or B3981 or Z5554 or Ecs4904 FT SW:SECE_ECOLI (P16920) (127 aa) fasta scores: E(): 7.6e-06, FT 32.000% id in 125 aa, and to Vibrio alginolyticus FT preprotein translocase SecE subunit SecE SW:SECE_VIBAL FT (Q9ZNE7) (126 aa) fasta scores: E(): 4.9e-08, 39.844% id in FT 128 aa" FT /protein_id="CAE40388.1" FT /translation="MSNTSIETVTSTADRIKLGLAVLVVIAGIVGFSMLDAQPMVARIG FT VFVGGLVVAALLAWFSEPGRRTLSFAGESYNEVKRVSWPTRKETIQMTGIVFAFVAVMG FT LLMWVLDKGIEWVLYGLLLGWK" FT misc_feature join(8196..8255,8265..8333,8427..8480) FT /note="3 probable transmembrane helices predicted for FT BP0008 by TMHMM2.0 at aa 16-35, 39-61 and 93-110" FT misc_feature 8346..8516 FT /note="HMMPfam hit to PF00584, SecE/Sec61-gamma subunits of FT protein translocation complex" FT CDS 8541..9074 FT /transl_table=11 FT /gene="nusG" FT /locus_tag="BP0009" FT /product="transcription antitermination protein NusG" FT /note="Similar to Escherichia coli transcription FT antitermination protein NusG or B3982 or Z5555 or Ecs4905 FT SW:NUSG_ECOLI (P16921) (181 aa) fasta scores: E(): 1.2e-41, FT 60.345% id in 174 aa, and to Neisseria meningitidis FT (serogroup A) transcription antitermination protein NusG or FT Nma0147 or Nmb0126 TR:Q9JRD9 (EMBL:AL162752) (178 aa) fasta FT scores: E(): 1.4e-46, 67.045% id in 176 aa" FT /protein_id="CAE40389.1" FT /translation="MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEV FT VEVKGGQKSITERRIFPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREV FT EKILNQMEEGVEKPRPKILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGR FT ATPVELDFSQVEKT" FT misc_feature 8544..8675 FT /note="HMMPfam hit to PF02357, Transcription termination FT factor nusG" FT misc_feature 9018..9047 FT /note="ScanRegExp hit to PS01014, Transcription termination FT factor nusG signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 9138..9569 FT /transl_table=11 FT /gene="rplK" FT /gene_synonym="relC" FT /locus_tag="BP0010" FT /product="50S ribosomal protein L11" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L11 RplK or RelC or B3983 SW:RL11_ECOLI (P02409) (141 aa) FT fasta scores: E(): 1.3e-34, 66.429% id in 140 aa, and to FT Neisseria meningitidis 50S ribosomal protein L11 RplK or FT Nma0146 TR:Q9JX02 (EMBL:AL162752) (144 aa) fasta scores: FT E(): 1.3e-44, 85.211% id in 142 aa" FT /protein_id="CAE40390.1" FT /translation="MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAK FT TQGMELGLPIPVVITAFADKSFTFIMKTPPATVLIKKASGVQKGSAKPHTDKVGTLTRA FT QAEEIAKTKQPDLTAADLDAAVRTIAGSARSMGITVEGG" FT misc_feature 9162..9560 FT /note="HMMPfam hit to PF00298, Ribosomal protein L11" FT misc_feature 9516..9563 FT /note="ScanRegExp hit to PS00359, Ribosomal protein L11 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 9572..10270 FT /transl_table=11 FT /gene="rplA" FT /locus_tag="BP0011" FT /product="50S ribosomal protein L1" FT /note="Similar to Escherichia coli 50S ribosomal protein L1 FT RplA or B3984 SW:RL1_ECOLI (P02384) (233 aa) fasta scores: FT E(): 1.1e-50, 65.801% id in 231 aa, and to Neisseria FT meningitidis (serogroup A) 50S ribosomal protein L1 RplA or FT Nma0145 or Nmb0128 TR:Q9JRJ1 (EMBL:AL162752) (231 aa) fasta FT scores: E(): 1.3e-52, 68.261% id in 230 aa" FT /protein_id="CAE40391.1" FT /translation="MAKLSKRAAAIAQKIDRTKLYPVGEALNLVKETATAKFDESIDVA FT VQLGIDPKKSDQLVRGSVVLPAGTGKTVRVAVFAQGEKADAARAAGADIVGLDDLAEQI FT KAGQMDFDVVIASPDTMRVVGALGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQIQY FT RTDKAGIIHATIGRASFGVEQLQNNLAALVDALQKARPAAAKGIYLRKLAVSSTMGGGA FT RVEIASLSAN" FT misc_feature 9614..10234 FT /note="HMMPfam hit to PF00687, Ribosomal protein L1p/L10e FT family" FT misc_feature 9932..9988 FT /note="ScanRegExp hit to PS01199, Ribosomal protein L1 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 10513..11037 FT /transl_table=11 FT /gene="rplJ" FT /locus_tag="BP0013" FT /product="50S ribosomal protein L10" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L10 RplJ or B3985 or Z5558 or Ecs4908 SW:RL10_ECOLI FT (P02408) (164 aa) fasta scores: E(): 4.4e-18, 43.429% id in FT 175 aa, and to Neisseria meningitidis (serogroups A and B) FT 50S ribosomal protein L10 RplJ or Nma0144 or Nmb0130 FT SW:RL10_NEIMA (Q9JQP7) (166 aa) fasta scores: E(): 6.6e-29, FT 55.233% id in 172 aa" FT /protein_id="CAE40392.1" FT /translation="MSLNRQEKAVVIEEVSAQVAKAQSIVIAEYRGLDVASVTVLRKTA FT RESGVYLRVLKNTLVRRAVAGTAFEPLSEQLTGPLIYGISADPVAAAKVLAGFAKSNDK FT LVIKAGSLPNSLLTQDGVKALATMPSREELLSKLLGTMQAPIAQFVRTLNEVPTKFARG FT LAAVRDQKAAA" FT misc_feature 10519..10812 FT /note="HMMPfam hit to PF00466, Ribosomal protein L10" FT CDS 11119..11502 FT /transl_table=11 FT /gene="rplL" FT /locus_tag="BP0014" FT /product="50S ribosomal protein L7/L12" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L7/L12 RplL or B3986 SW:RL7_ECOLI (P02392) (120 aa) fasta FT scores: E(): 7.6e-19, 61.905% id in 126 aa, and to FT Neisseria perflava 50S ribosomal protein L7/L12 RplL FT SW:RL7_NEIPE (Q9F5M1) (123 aa) fasta scores: E(): 7.5e-22, FT 66.142% id in 127 aa" FT /protein_id="CAE40393.1" FT /translation="MALSKAEILDAIAGMSVLELSELIKEMEEKFGVSAAAAAVAVAAP FT AAGGAGAAAAEEQTEFTVVLLEAGANKVSVIKAVRELTGLGLKEAKDLVDGAPKPVKEA FT LPKADAEAAKKKLEEAGAKVEVK" FT misc_feature 11296..11499 FT /note="HMMPfam hit to PF00542, Ribosomal protein L7/L12 FT C-terminal domain" FT CDS 11662..15774 FT /transl_table=11 FT /gene="rpoB" FT /gene_synonym="groN" FT /gene_synonym="nitB" FT /gene_synonym="rif" FT /gene_synonym="ron" FT /gene_synonym="stl" FT /gene_synonym="stv" FT /gene_synonym="tabD" FT /locus_tag="BP0015" FT /product="DNA-directed RNA polymerase beta chain" FT /EC_number="2.7.7.6" FT /note="Similar to Escherichia coli DNA-directed RNA FT polymerase beta chain RpoB or GroN or NitB or Rif or Ron or FT Stl or Stv or TabD or B3987 or Z5560 or ECS4910 FT SW:RPOB_ECOLI (P00575) (1342 aa) fasta scores: E(): 0, FT 64.260% id in 1371 aa, and to Pseudomonas aeruginosa FT DNA-directed RNA polymerase beta chain RpoB or PA4270 FT SW:RPOB_PSEAE (Q51561) (1357 aa) fasta scores: E(): 0, FT 67.080% id in 1370 aa" FT /protein_id="CAE40394.1" FT /translation="MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTAT FT SDRVNEGLQAAFSSIFPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKV FT RLVLLDREVSKPTIKEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEH FT DRGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPE FT SILAHFFDFDNFELKSEGGMMEFVAERWKGEMARFDIADRDGKVIVEKDKRINAKHLRD FT LAAGGIQRVSVPEDFLYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRAANVRDIQT FT LYTNDLDRGPYISQTLRADETADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEET FT YDLSRVGRMKVNSRLGRGDDSTGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRR FT VRCVGELAENQFRAGLVRVERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQL FT SQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG FT LINSMALYARLNEYGFLETPYRKIIDGKVSDQIDYLSAIEESHYVIAQANAALDDEGRF FT VDDLVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQ FT AVPCLRPEKPLVGTGVERTVAVDSGTTVQALRGGVVDHVDADRVVIRVNDEENVAGEVG FT VDIYNLIKYTRSNQNTNINQRPIVARGDKVAKGDVLADGASTDLGELALGQNMLIAFMP FT WNGYNFEDSILISERVVADDRYTSIHIEELTVVARDTKLGPEEITRDISNLAETQLNRL FT DDSGIVYIGAEVSADDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGM FT TGTVIDVQVFTREGIVRDKRAQSIIDDELRRYRQDLNDQLRIVENDQFDRIEKMLVGKT FT VNGGPRKLAKGATLTKAYLADLDRWQWFDIRLADEQHAVVLEQAKESLEQKRHQFDLAF FT EEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQPGDKMAGRHGNKGVVSRITPVEDMPHM FT ADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQAKSVRGYL FT EKVYNTTGSSAHIDSLTDEEVLELANNLKKGVPFATPVFDGATEEEIGKMLELAYPDDV FT AARMRLTASRSQAWLYDGRTGEQFERPVTIGYMHYLKLHHLVDDKMHARSTGPYSLVTQ FT QPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDITGRTKVYENIVKGDHVI FT DAGMPESFNVLVKEIRSLALDMDLERN" FT misc_feature 11905..15642 FT /note="HMMPfam hit to PF00562, RNA polymerase beta subunit" FT misc_feature 14905..14943 FT /note="ScanRegExp hit to PS01166, RNA polymerases beta FT chain signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 15774..20018 FT /transl_table=11 FT /gene="rpoC" FT /gene_synonym="tabB" FT /locus_tag="BP0016" FT /product="DNA-directed RNA polymerase beta' chain" FT /EC_number="2.7.7.6" FT /note="Similar to Escherichia coli DNA-directed RNA FT polymerase beta' chain RpoC or TabB or B3988 or Z5561 or FT ECS4911 SW:RPOC_ECOLI (P00577) (1407 aa) fasta scores: E(): FT 0, 66.405% id in 1399 aa, and to Neisseria meningitidis FT DNA-directed RNA polymerase beta' chain RpoC or NMA0141 FT TR:Q9JX03 (EMBL:AL162752) (1391 aa) fasta scores: E(): 0, FT 77.095% id in 1384 aa" FT /protein_id="CAE40395.1" FT /translation="MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSFGEVRKPETIN FT YRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGH FT IELASPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDD FT DFLAKTEEYGDDFRALMGAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLK FT VLEGFQKSGIKAEWMVMEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR FT LLELKAPEIILRNEKRMLQEAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQ FT NLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKK FT LVESQEPVVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFN FT ADFDGDQMAVHVPLSLEAQLEARTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRER FT INGKGEGIFFADVSEVQRAYDNGEVELQTRITVRLTEYERDEQGEWQPVKHRHETTVGR FT ALLSEILPKGLPFTVLNKALKKKEISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRG FT GISIAMEDMLIPKAKEGILAEASREVKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVG FT KAMMEQLATEPVVNRHGEEVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS FT IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITED FT DCGTSHGYAMKALVEGGEVIEPLRDRILGRVAAIDVVNPDTQETAIAAGTLLDEDLVDL FT IDRLGVDEVKVRTPLTCETRHGLCAHCYGRDLGRGSHVNVGEAVGVIAAQSIGEPGTQL FT TMRTFHIGGAASRSALASAVETKSNGTVGFASTMRYVTNAKGERVAISRSGELAIFDDN FT GRERERHKIPYGATVLVGDGEAVKAGTRLASWDPLTRPIVSEYSGAVRFENIEEGVTVA FT KQVDEVTGLSTLVVITPKTRGGKIVMRPQIKLVNENGEDVKIAGTDHSVNISFPVGALI FT TVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFG FT KDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGI FT EKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTEFIPGEQVERSEL FT LNENDRVVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDL FT RGLKENVIVGRLIPAGTGLAYHIARKDKEALEAAEREAARQLANPFEDAPVTVGGEPEA FT PAADTPSDDSAE" FT misc_feature 16476..18266 FT /note="HMMPfam hit to PF00623, RNA polymerase alpha FT subunit" FT misc_feature 16755..16778 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 18429..19880 FT /note="HMMPfam hit to PF01854, RNA polymerase A/beta'/A'' FT subunit" FT CDS complement(20127..20531) FT /transl_table=11 FT /locus_tag="BP0017" FT /product="putative lipoprotein" FT /note="no significant database matches" FT /protein_id="CAE40396.1" FT /translation="MPIILRPFLPSLSLAVLALSGCANLSQPAAEAPATPAALQALAEV FT RTEYGAGHYGEVIRRVARSDELAAAPKAVRIEAFKLQAFSYCVSNYTQLCEDAFVRILH FT LDSSFTLAPNEAGHPAWGPVFRAAQSKAGT" FT CDS 20772..21947 FT /transl_table=11 FT /locus_tag="BP0018" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE40397.1" FT /translation="MPLFAASQHPRSPFAGAAPLAHRPLSAIAATAAGGVPQARIKRLL FT GELVPQLASVHEQGHICGDITVDSVGLDESGRAHLLALNGAAQGEAALPAPGYAPFELY FT VEDPAWPRGPWTDIYALSAVAHSLITGRRPPAAPERSVNDGYQPLAQRDLPKYDNDFLR FT AIDAGLAVRPHTFEAFVDSLKFPEPEPPAEAMAPLPSEPPPRDEVHDEEPVRQRPAVRS FT ILFAILLALATLGVAVYWWQRLTGTPSGVITSSERVTTPGATATPSDSREAEPPAAGAA FT SPQGGDAGSADTSGAAPPAQAQAGPDAAPAPDVAPEDAATDAQAESEAAATPAPAAARV FT TVRINVQPWGEIWINGVRRGVSPPMKELRLVPGRYSVVVRNADLPPYRATL" FT misc_feature 21426..21494 FT /note="1 probable transmembrane helix predicted for BP0018 FT by TMHMM2.0 at aa 219-241" FT CDS complement(join(22008..22421,22420..24351)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0019" FT /product="probable two-component sensor protein FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 644. The frameshift occurs within FT a (GC)5 polymeric tract. The sequence has been checked and FT believed to be correct. Similar to Pseudomonas aeruginosa FT probable two-component sensor PA4036 TR:Q9HWZ1 FT (EMBL:AE004820) (766 aa) fasta scores: E(): 6.1e-47, FT 37.247% id in 792 aa, and to Caulobacter crescentus FT putative sensory box histidine kinase CC3327 TR:Q9A377 FT (EMBL:AE005994) (761 aa) fasta scores: E(): 6.9e-39, FT 34.522% id in 785 aa" FT /db_xref="PSEUDO:CAE40398.1" FT misc_feature complement(22020..22370) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT variation complement(22419..22428) FT /note="(GC)5 in pertussis; (GC)6 in parapertussis" FT misc_feature complement(22498..22695) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT CDS complement(24353..25459) FT /transl_table=11 FT /locus_tag="BP0020" FT /product="putative peptidoglycan binding protein" FT /note="Similar to Caulobacter crescentus peptidoglycan FT binding domain protein CC3326 TR:Q9A378 (EMBL:AE005994) FT (457 aa) fasta scores: E(): 3.3e-23, 33.711% id in 353 aa" FT /protein_id="CAE40399.1" FT /translation="MIRPFAPAFMLVCALVASAAVQAQPAGSLGENFLYRVRSGDTLIA FT LASTYTGNESNWSILQTLNRVDDPQRLPIALELRIPLAMIPVQAAGAEVVHVSGNATAD FT GQALRVGTQIVEGSTIRTASGSFVTLKLSDGSQVTIPENGTVAANRLRQFQRVPLTDSI FT FQVQQGELESRVAPGGQGVGRFEIRTPVAVTGVRGTRFRVKSSPRGASSEVLEGSVRLQ FT PHAPDAALATPVAVSSGYGANVGSDGAFSGVQALLPAPQLQAPARAASGGWTVPFAPVS FT GASAYIVRVSRDAEGMHVVASDRFDTNDVRFRAPGAGTYYVAVRAVDASGLNGREAVQP FT FEGANVLSTPYGLSVATGTGDLVLLSEF" FT misc_feature complement(25217..25357) FT /note="HMMPfam hit to PF01476, LysM domain" FT misc_feature complement(25391..25459) FT /note="Signal peptide predicted for BP0020 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.967 between residues 23 and 24" FT CDS complement(join(25477..25797,25800..26213)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0021" FT /product="probable two-component response regulator FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 138. The frameshift occurs within FT a (G)5 homopolymeric tract. The sequence has been checked FT and believed to be correct. Similar to Caulobacter FT crescentus DNA-binding response regulator CC3325 TR:Q9A379 FT (EMBL:AE005994) (236 aa) fasta scores: E(): 3.6e-38, FT 47.009% id in 234 aa, and to Pseudomonas aeruginosa FT probable two-component response regulator PA4032 TR:Q9HWZ5 FT (EMBL:AE004820) (238 aa) fasta scores: E(): 9.7e-29, FT 41.277% id in 235 aa" FT /db_xref="PSEUDO:CAE40400.1" FT misc_feature complement(25585..25755) FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT variation complement(25799..25803) FT /note="(G)5 in pertussis, CGG in parapertussis" FT misc_feature complement(25863..26201) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS 26471..27286 FT /transl_table=11 FT /locus_tag="BP0022" FT /product="Two-component response regulator" FT /note="Similar to Zymomonas mobilis aerobic respiration FT control protein ArcA TR:Q9X3W0 (EMBL:AF088896) (241 aa) FT fasta scores: E(): 2.5e-10, 30.638% id in 235 aa, and to FT Rhodobacter sphaeroides DmsR TR:O32479 (EMBL:D89075) (232 FT aa) fasta scores: E(): 1.6e-10, 28.632% id in 234 aa." FT /protein_id="CAE40401.1" FT /translation="MRNTAPHCLKCVQARAFPFERLKAGREPADWQGFVMKQLSTLIMT FT PDDADRDRIIAAMLLAGISAKGCSTPLELFGLLSEDTYDAVVMDLSELGELGYALVARL FT RGSPELGIIVIGGNLTLDARLRCLQSGADACVPLPADERELACVLLALARRLPAWQEDE FT EAVAQRGTDDEGWELRDQDWTLVAPGGEELSLSANERQIVRLLLGAAGRAIGRAELASE FT LAVDGPAVRSTGERSIDVIVSRLRRKAELAGLVLPIRTVYGSGYLFANS" FT misc_feature 26585..26917 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT misc_feature 27041..27265 FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT CDS complement(27283..28233) FT /transl_table=11 FT /locus_tag="BP0023" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40402.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS" FT repeat_region 27283..27310 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(27283..28335) FT misc_feature complement(27319..27852) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(27910..27975) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(28304..28335) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(28315..28650) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0024" FT /product="putative racemase (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Rhodococcus spAD45 putative FT racemase IsoG TR:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta FT scores: E(): 3.3e-16, 45.370% id in 108 aa, and to FT Thermoplasma volcanium L-carnitine dehydratase TVG1215416 FT TR:BAB60328 (EMBL:AP000995) (399 aa) fasta scores: E(): FT 1.7e-14, 41.509% id in 106 aa. Similar to N-terminal FT regions of several CDSs including BP0416, BP3709, BP0253, FT BP3318, BP0199" FT /db_xref="PSEUDO:CAE40403.1" FT CDS complement(28675..29109) FT /transl_table=11 FT /locus_tag="BP0025" FT /product="conserved hypothetical protein" FT /note="Similar to Methanothermobacter thermautotrophicus FT conserved protein Mth1398 TR:O27449 (EMBL:AE000902) (133 FT aa) fasta scores: E(): 4.2e-06, 32.692% id in 104 aa, and FT to Archaeoglobus fulgidus conserved hypothetical protein FT Af0284 TR:O29957 (EMBL:AE001085) (165 aa) fasta scores: FT E(): 3.7e-05, 22.936% id in 109 aa" FT /protein_id="CAE40404.1" FT /translation="MEMTMEQEPLNGWPQPYRLLDAQPYWDALQDEKLTYQQCVACRQS FT VWPAHSRCPHCSSDQLVWQASSGRATVYSFSTVTRGPTPVWASIVPYTVGFVEMDEGYF FT LFTQIEGPPGSIGVGDKVQVRFVRRGAQILPVFVSADLPA" FT misc_feature complement(28702..29052) FT /note="HMMPfam hit to PF01796, Domain of unknown function FT DUF35" FT CDS complement(29142..30368) FT /transl_table=11 FT /locus_tag="BP0026" FT /product="putative thiolase" FT /note="Similar to Mycobacterium tuberculosis CDC1551 FT nonspecific lipid-transfer protein mt1663 TR:AAK45933 FT (EMBL:AE007030) (402 aa) fasta scores: E(): 5.1e-14, FT 27.229% id in 415 aa, and to Pseudomonas fluorescens PhlC FT TR:Q51727 (EMBL:U41818) (398 aa) fasta scores: E(): FT 5.2e-15, 27.188% id in 320 aa" FT /protein_id="CAE40405.1" FT /translation="MKAMAMTPKPTAAIVGMGDAYASMQDRKDPIQLAVAATHKALADA FT GITKDQVDAVFTGRSPWADKRSQWSNIFCSHMHMPVTITSEITMHGAGLNATVAMAAQM FT IAAGRAQYVLCLQSDATELFVDAVAMGAEADADPQFEIPYGPTIPALYAQAACRYFHEF FT GITEEDLADVAIANQSWAMHHPHAAKARFGSIDRAKVLSSPYVATPLRRWMCSTWGGGT FT GGALVVTSVDNARTAQDPVYVMGYGSATTHEYLGDRMNMRRCRYPSLGAFPNLTHTATA FT EAARQAYESSGLTPADIDMAQISVNFAHMGPLIMEDLGFAAKGRGMDLYRAGRTGVDGD FT LPIDTNGGWLSFGQPGISCNMDSYAEAVRQLRGNALGRAPARRPRTVLVQGSGGMLAAG FT SVTILASEL" FT CDS complement(30365..30862) FT /transl_table=11 FT /locus_tag="BP0027" FT /product="MaoC family protein" FT /note="Similar to Archaeoglobus fulgidus MaoC protein FT af2313 TR:O27971 (EMBL:AE000944) (151 aa) fasta scores: FT E(): 3.3e-19, 46.154% id in 143 aa, and to Rhodococcus FT spNCIMB 9784. fad-binding protein CampD TR:AAK50623 FT (EMBL:AF323755) (167 aa) fasta scores: E(): 2.4e-12, FT 33.562% id in 146 aa" FT /protein_id="CAE40406.1" FT /translation="MARINNRIDQTFDEIEVGKVFRSGGRTITETDVVNFCALTGNWIE FT IHSNVQYASKTRFGKRLVQGSLTYSIVTGLIQFGLGIQANYGIDNMRFLAPVSIGDTIY FT AVCEVMRKKEKDEKYGVITFFMKAVNQDGTVVQKGEWSLLMLRRREDLDALVGASLPEV FT AA" FT misc_feature complement(30473..30832) FT /note="HMMPfam hit to PF01575, MaoC like domain" FT misc_feature complement(30611..30676) FT /note="1 probable transmembrane helix predicted for BP0027 FT by TMHMM2.0 at aa 62-84" FT CDS complement(31070..31978) FT /transl_table=11 FT /locus_tag="BP0028" FT /product="putative transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator pa0877 TR:Q9I568 (EMBL:AE004522) FT (298 aa) fasta scores: E(): 1e-17, 27.985% id in 268 aa, FT and to Rhizobium loti probable transcriptional regulator FT mlr2195 TR:Q98IY2 (EMBL:AP002999) (397 aa) fasta scores: FT E(): 3.5e-17, 29.825% id in 285 aa" FT /protein_id="CAE40407.1" FT /translation="MRQVDFFTLRLFLSAVEEGQIGRAALRENIAPSAATKRIQELEDV FT VGLRLLERTPKGVILSPAGEVLVRHIRQIFTNVDELRAELSAFSEGVRGEVSVASARSI FT IAPYLAHEFGAYIRDYPLVDLIVREVENAAIVQAVAQGDADIGVFAAAPALDLSGVDVM FT PYRQDRMVVVMSHGHRLAQRQSVTFEDLLSENLIVPAALHMALRTAADRLGREFEPKYG FT VTSAGVAISLAQEGLGVTIQPECLLDLKVFEHAVGVELAESWANRSIHIATARGRAAGP FT AANLLLKQLLDRPRALSSVSD" FT misc_feature complement(31535..31963) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(31829..31921) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS 32215..33006 FT /transl_table=11 FT /locus_tag="BP0029" FT /product="putative enoyl-CoA hydratase" FT /note="Similar to Deinococcus radiodurans enoyl-CoA FT hydratase, putative DR0184 TR:Q9RXX1 (EMBL:AE001881) (273 FT aa) fasta scores: E(): 8e-50, 52.209% id in 249 aa, and to FT Mycobacterium tuberculosis enoyl-CoA hydratase EchA15 or FT RV2679 or MTV010.03 TR:O53232 (EMBL:AL021186) (276 aa) FT fasta scores: E(): 6e-48, 49.621% id in 264 aa. Similar to FT BP3304, 51.331% identity in 263 aa overlap." FT /protein_id="CAE40408.1" FT /translation="MRYEDFEFLLCEPQDDGVMLVTLNRPDAMNATNDRMHWELTRIWG FT VVNDDPGVKAVVVTGAGERAFSAGGDLSVVEAMSNSHETTMRVMKEASDIVYNMLACDK FT PIISAINGTAVGAGLADVSVMAEDAKLTDGHARLGVSAGDHAAIIWPILCGMSKAKYYL FT MTADFVDGKEAERIGLVTFCAPRAEVLPRSLAIAAKLARGSQTAIRATKKSLNNWMRTA FT GPAFDNSLALEMLCFLGPDVKEGLAALRDKRAPDFPSARLP" FT misc_feature 32269..32769 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS 33049..34470 FT /transl_table=11 FT /locus_tag="BP0030" FT /product="conserved hypothetical protein" FT /note="Similar to Methanothermobacter thermautotrophicus FT conserved protein mth965 TR:O27046 (EMBL:AE000870) (452 aa) FT fasta scores: E(): 1.2e-26, 31.308% id in 428 aa, and to FT Agrobacterium tumefaciens Agr_l_2924p agr_l_2924 FT TR:AAK90029 (EMBL:AE008346) (448 aa) fasta scores: E(): FT 8.3e-24, 29.888% id in 445 aa" FT /protein_id="CAE40409.1" FT /translation="MNAAPSPSTPPGNCPPLEQAVVRFIQDLKYEHIDAAALAGVNRLM FT RDQLALQVGISAMPWSRQLLDYALTQQRPGVSRVSASTLKMSAADAAFVNGSYGHGFEY FT DDAHGPSYSHPGSCVIPAALAIGEELGSSLQDVITAMVAGYEVYTRIGLLAAPDLLRRG FT YHPHCTLSNFGAAAVAAKLRGFDAETTLHALAIALSHTSGTTEYSSTGGSIKRIHAGLG FT TRNGMMAADMARAGITGPRAFLSGNKGFFKTFLQRPAGEAPQQRFAPGEPFQVATVWLK FT AYCACYCTHAYIDALRPYAERRGEIADIHLKITPHFNVVVGTANACAYAPTNIEHVQFS FT LPIQAALAVQGLGNGYRIHRDYLDGRVDMAPVIAMARGIRITEDPGLETRHPGKFVADV FT TVTFRDGSAEHVFVADPIGTDTNPMPEHEQDAKFMELTADALGQARARALLAALRKMDP FT TMKAADLMALCEPAP" FT repeat_region 34524..34555 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 34524..35576 FT CDS 34626..35576 FT /transl_table=11 FT /locus_tag="BP0031" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40410.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 34884..34949 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 35007..35540 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(35545..35576) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(35573..36763) FT /transl_table=11 FT /locus_tag="BP0032" FT /product="probable transporter" FT /note="Similar to Rhodococcus fascians chloramphenicol FT resistance protein TR:Q52751 (EMBL:Z12001) (391 aa) fasta FT scores: E(): 1.6e-10, 25.193% id in 389 aa, and to FT Rhodococcus rhodochrous CmrA TR:O30679 (EMBL:AF015087) (391 FT aa) fasta scores: E(): 4.2e-12, 25.326% id in 383 aa" FT /protein_id="CAE40411.1" FT /translation="MSDHDASFSLKDIAVPAFGPSILYGVSNGAILPVVALTARELGAS FT LATSGLIVGLVGIGSLVSNIPAAMFTSRHGERRSMVGAAALSVVALLLCIFAGTLWMLA FT TGVFMVGMASSVFLLARQGYMIDAVPAYMRARALSTLAGTMRIGVFAGPFAGAALIHFM FT GLQGAYWVAAVAMTGAGLIAWFAPDMAPPRRRGEAAVARPRLLDVARAHRQVYLTLGLG FT ILLVSAVRASRQVVIPLWADHLGVNPATTSLIYGLVAAIDMSVFYPAGMLMDRRGRLWV FT AVPSTLLMGCALIGTSLTSGVAGFVIVAMMLGMGNGIGSGIVMTLGADAAPASGRTEFL FT GLWRLMSDLGGSLGPVALSGITALVSLAAGVAAMGGVGLAAAAVFWHWLPRGQAPR" FT misc_feature complement(join(35597..35662,35678..35743,35783..35848, FT 35861..35926,35948..36013,36053..36118,36206..36262, FT 36275..36340,36404..36505,36551..36616,36653..36718)) FT /note="11 probable transmembrane helices predicted for FT BP0032 by TMHMM2.0 at aa 15-37, 49-71, 86-120, 141-163, FT 167-186, 215-237, 250-272, 279-301, 305-327, 340-362 and FT 367-389" FT misc_feature complement(35600..36730) FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter" FT misc_feature complement(35726..35761) FT /note="ScanRegExp hit to PS00213, Lipocalin signature." FT misc_feature complement(35756..35836) FT /note="ScanRegExp hit to PS01125, ROK family signature." FT CDS 37013..37924 FT /transl_table=11 FT /gene="glyQ" FT /gene_synonym="glyS(a)" FT /locus_tag="BP0033" FT /product="glycyl-tRNA synthetase alpha chain" FT /EC_number="6.1.1.14" FT /note="Similar to Escherichia coli glycyl-tRNA synthetase FT alpha chain GlyQ or GlyS(a) or B3560 SW:SYGA_ECOLI (P00960) FT (303 aa) fasta scores: E(): 1.9e-90, 74.658% id in 292 aa, FT and to Neisseria meningitidis (serogroups A and B) FT glycyl-tRNA synthetase alpha chain GlyQ or nma0521 or FT nmb1932 TR:Q9JRC6 (EMBL:AL162753) (301 aa) fasta scores: FT E(): 2.7e-96, 75.748% id in 301 aa" FT /protein_id="CAE40412.1" FT /translation="MLTFQQIILTLQDYWDKQGCALLQPYDMEVGAGTSHTATFLRAIG FT PEPWRAAYVQPSRRPKDGRYGENPNRLQHYYQYQVVLKPAPPEILDLYIGSLKALGIDP FT TQHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCTPTTGEITYGLE FT RLAMYLQDVESVYDLVWTEGANGNRVYYRDVFHQNEVEQSTYNFEHASADMLFAHFNDY FT EAEAKRLMDVPLALPAYEAALKAAHTFNMLDARGAISVTERAAYIGRIRNLSRAVAQAY FT YDSRERLGFPMLAGRKAAGEAA" FT misc_feature 37022..37888 FT /note="HMMPfam hit to PF02091, Glycyl-tRNA synthetase alpha FT subunit" FT misc_feature 37487..37516 FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT CDS 37926..40064 FT /transl_table=11 FT /gene="glyS" FT /gene_synonym="glyS(b)" FT /locus_tag="BP0034" FT /product="glycyl-tRNA synthetase beta chain" FT /EC_number="6.1.1.14" FT /note="Similar to Escherichia coli glycyl-tRNA synthetase FT beta chain GlyS or GlyS(b) or B3559 SW:SYGB_ECOLI (P00961) FT (688 aa) fasta scores: E(): 3e-69, 40.056% id in 709 aa, FT and to Pseudomonas aeruginosa glycyl-tRNA synthetase beta FT chain GlyS or PA0008 TR:Q9I7B8 (EMBL:AE004440) (684 aa) FT fasta scores: E(): 6.1e-70, 44.600% id in 713 aa" FT /protein_id="CAE40413.1" FT /translation="MTTDIRPLLIELFTEELPPKALQKLGQAFAEGVRATLARHHLLAD FT GCAVEPFATPRRLAVRLSAVLAQAPEQAYAEKLMPVKVGLDANGQPTAALAKKLAAKGL FT EGLDPATLERESDGKQEYLVARGTAAGAQLAVGLQEGLDAAIDGLPIPKVMRYQLADGQ FT TTVKFVRPAHGLVALFGADIVPIAALGLQAGRATQGHRFQSNGAIELATAQGYEADLAE FT RGRVIASFEARRAEISRLLDEHAQRLGATLGDDPEVTALLDEVTALVEHPTVYVGQFEE FT QFLQVPQECLILTMRLNQKYFPLFDPASGKLTHRFLIVSNMQVADPANIVEGNQRVVRP FT RLADAQFFFETDRKTPLAARVEQLGSIVYHNKLGTQLERVERVRAIARGIATALGGDAA FT HCDRAALLAKADLGSNMVGEFPELQGIMGAYYAQGDGEPADVVTALRTQYRNRYDAPVD FT AATLTAATLFIAERIETLVGIWSIGLAPTGERDPFGLRRAALGLISAFEQLAAGGWLKV FT SEDGPLSLDGLLALAAQAFPDGKIGADTLAEVRAFIYERYRNQLIGEHDRNAVEAVIAL FT APPLHQVAARVRAVAAFAQLPAAASLAAANKRIGNLLKKAEGEIGAVDAALLQDPAEKA FT LAEAVAQLRPQARAQLQAGDFAASLATLAQAREPVDAFFADVMVMADDAALRANRLALL FT GQLHGLMNQVADISRLAQ" FT misc_feature 37947..40055 FT /note="HMMPfam hit to PF02092, Glycyl-tRNA synthetase beta FT subunit" FT CDS 40061..40600 FT /transl_table=11 FT /locus_tag="BP0035" FT /product="putative haloacid dehalogenase-like hydrolase" FT /note="Similar to Pseudomonas fluorescens hisb-like protein FT TR:Q9F729 (EMBL:AF286536) (213 aa) fasta scores: E(): FT 3.1e-37, 57.062% id in 177 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa0006 pa0006 TR:Q9I7C0 FT (EMBL:AE004440) (178 aa) fasta scores: E(): 8.4e-38, FT 58.286% id in 175 aa" FT /protein_id="CAE40414.1" FT /translation="MKLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWT FT VVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDAIFMCPHGPDDGCACRKPLP FT GMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGLPEGTR FT VCEDLAAVAEQLLQEA" FT misc_feature 40061..40501 FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS 40604..41332 FT /transl_table=11 FT /locus_tag="BP0036" FT /product="probable acyltransferase" FT /note="Similar to Neisseria meningitidis lysophosphatidic FT acid acyltransferase homolog NlaB or NMA0404 TR:Q9XDL6 FT (EMBL:AF036242) (247 aa) fasta scores: E(): 4.2e-32, FT 41.277% id in 235 aa, and to Pseudomonas aeruginosa FT probable acyltransferase PA0005 TR:Q9I7C1 (EMBL:AE004440) FT (257 aa) fasta scores: E(): 2.1e-37, 42.437% id in 238 aa" FT /protein_id="CAE40415.1" FT /translation="MAWLRSALYALFLIVTVIPYAFACILWAPLPLHWRYRLTVGWPRL FT AIWGARVICGIRWRIKGAENLPDGPAILLSKHQSAWETLFFPAHMPREVCFVYKKELHM FT VPFFGWGLALLRMIPIDRAKGRDAFEQVVRQGQVRLDEGRWPLLFPEGTRVPPGKTGRF FT KMGGALLASRTGARIIPVAHNAGECWRRNAFVKRPGLITVSIGPAIESQDVAPEVLNAK FT VQAWIEGEMRVLNPERYGQA" FT misc_feature 40604..40672 FT /note="Signal peptide predicted for BP0036 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.995 between residues 23 and 24" FT misc_feature 40622..40690 FT /note="1 probable transmembrane helix predicted for BP0036 FT by TMHMM2.0 at aa 7-29" FT misc_feature 40790..41305 FT /note="HMMPfam hit to PF01553, Acyltransferase" FT CDS 41319..42212 FT /transl_table=11 FT /locus_tag="BP0037" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr5068 protein TR:Q98CP0 FT (EMBL:AP003005) (252 aa) fasta scores: E(): 3.9e-08, FT 28.458% id in 253 aa, and to Rhizobium meliloti conserved FT hypothetical protein smc02768 TR:CAC41413 (EMBL:AL591782) FT (251 aa) fasta scores: E(): 5.6e-08, 25.306% id in 245 aa" FT /protein_id="CAE40416.1" FT /translation="MAKPDQLELLFDVAPPADPASAAPRKTPKARPAPPAPAAIATPCP FT DPLPPGARWREVHTEQQPIGFVLLRSRRRSIGFVVADDGLRVTAPNWVTLEQIDDAVRE FT KARWILAKLRDWHARKEQLAMAHTRWQAGGELPYLGKRIVLGLGAERRQACLSGDADAP FT CDGDTLWLALPVDADQARIRDAAQAWLQQRAGAWFGARLAHFLQLTGLRIRRWRLSSAA FT TRWGSCTSDGNIMLNWRLIHFAPAIIDYVIAHELAHLREMNHSQDFWTEVGHILPGFED FT AKNVLRRHDPATLPQF" FT misc_feature 41511..42194 FT /note="HMMPfam hit to PF01863, Protein of unknown function FT DUF45" FT CDS 42283..42678 FT /transl_table=11 FT /gene="gloA" FT /locus_tag="BP0038" FT /product="lactoylglutathione lyase" FT /EC_number="4.4.1.5" FT /note="Similar to Escherichia coli lactoylglutathione lyase FT GloA or B1651 or Z2669 or ECS2360 SW:LGUL_ECOLI (Q59384) FT (135 aa) fasta scores: E(): 5.1e-34, 67.939% id in 131 aa, FT and to Neisseria meningitidis lactoylglutathione lyase GloA FT or NMA2147 or NMB0340 SW:LGUL_NEIMA (O33393) (138 aa) fasta FT scores: E(): 1.2e-42, 78.626% id in 131 aa" FT /protein_id="CAE40417.1" FT /translation="MRLLHTMLRVGNLDKSIDFYTSVLGMRELRRKDYPDGRFTLAFVG FT YQDESEAAAIELTHNWDTEKYDLGTGYGHIAIEVDNAYEACDKVKEKGGKVTREAGPMK FT HGTTVIAFVEDPDGYKIEFIQKKGRND" FT misc_feature 42295..42360 FT /note="ScanRegExp hit to PS00934, Glyoxalase I signature FT 1." FT misc_feature 42307..42660 FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT misc_feature 42487..42525 FT /note="ScanRegExp hit to PS00935, Glyoxalase I signature 2. FT Confirmed by InterPro eMOTIF pattern match." FT CDS 42688..43218 FT /transl_table=11 FT /locus_tag="BP0039" FT /product="peptide deformylase" FT /note="Similar to Leptospira interrogans peptide FT deformylase Pdf TR:AAK70806 (EMBL:AY040678) (178 aa) fasta FT scores: E(): 2.1e-30, 50.000% id in 168 aa, and to FT Pseudomonas aeruginosa probable peptide deformylase PA1122 FT TR:Q9I4L3 (EMBL:AE004542) (147 aa) fasta scores: E(): FT 9.9e-34, 69.630% id in 135 aa. Also similar to BP0552, FT 40.881% identity (44.218% ungapped) in 159 aa overlap." FT /protein_id="CAE40418.1" FT /translation="MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGV FT GLAAPQIGVDLQLVIFGFERNDRYPDAPAVPRTILCNPVIEPLSDEMEDGWEGCLSVPG FT LRGLVPRYRHIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTKFGY FT TEVLFPEMDPNAD" FT misc_feature 42697..43140 FT /note="HMMPfam hit to PF01327, Polypeptide deformylase" FT CDS complement(43347..43559) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0040" FT /product="C-terminal region of a putative oxidoreductase FT (Pseudogene)" FT /note="Pseudogene. This CDS is the C-terminal region of FT BP3335 which was disrupted by the insertion of IS481 FT element." FT repeat_region 43562..43593 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 43562..44614 FT CDS 43664..44614 FT /transl_table=11 FT /locus_tag="BP0041" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40420.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR" FT misc_feature 43922..43987 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 44045..44578 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(44583..44614) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(join(44605..44922,44924..45163)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0042" FT /product="putative lipase (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element following codon 183, and contains a FT frameshift mutation following codon 80. The frameshift FT occurs within a homopolymeric tract of (C)7. The sequence FT has been checked and believed to be correct. Similar to FT Homo sapiens monoglyceride lipase TR:CAC43316 FT (EMBL:AJ270950) (303 aa) fasta scores: E(): 2.3e-08, FT 36.709% id in 158 aa, and to Streptomyces coelicolor FT putative lipase sc6f7.19C TR:Q9KZC3 (EMBL:AL353870) (269 FT aa) fasta scores: E(): 4.6e-11, 40.816% id in 147 aa" FT /db_xref="PSEUDO:CAE40421.1" FT variation complement(44924..44930) FT /note="(C)7 in pertussis; (C)6 in parapertussis" FT CDS 45201..45749 FT /transl_table=11 FT /locus_tag="BP0043" FT /product="putative exported protein" FT /note="Similar to the N-terminal region of Escherichia coli FT resolvase rsvB TR:Q9S0Z7 (EMBL:AB024946) (269 aa) fasta FT scores: E(): 5.2, 30.357% id in 112 aa" FT /protein_id="CAE40422.1" FT /translation="MISTLFRFMLKKRVRILWQAGCAALLLAACSPSYNWREIDVADGR FT VRAAFPGRVQTDTRDLALAEVPLRFSLTSARVEQAVFAIGHAPLPPEVAADPARRRALG FT EALARSLYANLGVQPPDPLPAPGADIEIHAPPGERDDWLLARVWATDDMLIEAVAAGTR FT QTLPAERAREFIDAVELRR" FT misc_feature 45201..45305 FT /note="Signal peptide predicted for BP0043 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.989) with cleavage site FT probability 0.621 between residues 35 and 36" FT misc_feature 45258..45290 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(45721..45957) FT /transl_table=11 FT /locus_tag="BP0044" FT /product="transcriptional regulator" FT /note="Similar to the C-terminal regions of Vibrio FT anguillarum transcriptional activator protein VanR FT SW:VANR_VIBAN (P74946) (240 aa) fasta scores: E(): 6.7e-09, FT 48.611% id in 72 aa, and to Rhizobium loti transcriptional FT regulator mlr5637 TR:Q98BC5 (EMBL:AP003007) (243 aa) fasta FT scores: E(): 5.4e-08, 52.459% id in 61 aa" FT /protein_id="CAE40423.1" FT /translation="MPQRTTLTPRELDCLHWSALGKTSWETARILGIAARTVDFHLANA FT CAKLGVANRRAAVARAVQCGLLPALTAAAPPHR" FT misc_feature complement(45751..45948) FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family" FT misc_feature complement(45829..45894) FT /note="Predicted helix-turn-helix motif with score 1061 FT (+2.80 SD) at aa 51-72, sequence KTSWETARILGIAARTVDFHLA" FT CDS 46085..46978 FT /transl_table=11 FT /locus_tag="BP0045" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0188 TR:Q9I6U6 (EMBL:AE004456) (293 aa) fasta FT scores: E(): 2e-25, 35.172% id in 290 aa, and to Vibrio FT cholerae hypothetical protein Vc1229 vc1229 TR:Q9KSM7 FT (EMBL:AE004202) (291 aa) fasta scores: E(): 5.7e-15, FT 31.034% id in 290 aa" FT /protein_id="CAE40424.1" FT /translation="MLAVVQFYWSAVVLLLPLLACAGIGAYWAKRDYPFGGTFITMLVT FT TVTTPALVFHTFVTTQLDDRALLAIAGASLLALLACALACAGLLRLFGLPVRTLLPTAF FT VPNAGNLGLPVSQLAFGDAGLSAAVAFFAVNSFVTHTIAVRMLPGANTPGSWKSPVLLA FT SVAAVTLRALDIPVPDWLVATSRMLGAVTVPLMLLSLGHALALIPANGMRAGAVVAALR FT LAVGLAAGYAVVWLLGLPDLLAGALALQMAMPCAVVSYMYARRYTDVGDIAAGAVLVST FT VVFLLLAPALLWFTRQ" FT misc_feature 46085..46171 FT /note="Signal peptide predicted for BP0045 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.771) with cleavage site FT probability 0.411 between residues 29 and 30" FT misc_feature join(46103..46171,46199..46258,46295..46363,46421..46489, FT 46643..46711,46724..46792,46811..46870,46898..46966) FT /note="8 probable transmembrane helices predicted for FT BP0045 by TMHMM2.0 at aa 7-29, 39-58, 71-93, 113-135, FT 187-209, 214-236, 243-262 and 272-294" FT CDS complement(join(46982..47479,47475..47984)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0046" FT /product="probable malate/L-lactate dehydrogenase FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 169. The frameshift occurs within FT a (GCCGC)2 tract. The sequence has been checked and FT believed to be correct. Similar to Methanococcus jannaschii FT malate dehydrogenase I Mdh or MJ1425 SW:MDH1_METJA (Q58820) FT (344 aa) fasta scores: E(): 2.6e-26, 31.818% id in 330 aa, FT and to Methanothermus fervidus malate dehydrogenase Mdh FT SW:MDH_METFE (P16142) (339 aa) fasta scores: E(): 3.8e-26, FT 30.247% id in 324 aa" FT /db_xref="PSEUDO:CAE40425.1" FT misc_feature complement(join(46997..47479,47475..47981)) FT /note="HMMPfam hit to PF02615, Malate/L-lactate FT dehydrogenase" FT variation complement(47476..47485) FT /note="(GCCGC)2 in pertussis; (GCCGC)3 in parapertussis" FT CDS 48148..49395 FT /transl_table=11 FT /gene="metX" FT /locus_tag="BP0047" FT /product="homoserine O-acetyltransferase" FT /EC_number="2.3.1.31" FT /note="Similar to Pseudomonas putida FT homoserine-ortho-acyltransferase MetX TR:AAK49778 FT (EMBL:AY028975) (358 aa) fasta scores: E(): 4.6e-66, FT 55.108% id in 323 aa, and to Neisseria meningitidis FT homoserine O-acetyltransferase MetX or nmb0940 FT SW:METX_NEIMB (Q9JZQ5) (379 aa) fasta scores: E(): 1.7e-88, FT 58.839% id in 379 aa" FT /protein_id="CAE40426.1" FT /translation="MTNPVLNPALPAMAAAPVAATPSAVGSAGIVAPVFLRFDEPLPLA FT SGQTLNGYELAIETYGTLNAQRTNAVLVCHALNASHHVAGVSADNPKDVGWWDNMVGPG FT KPVDTNRYFVIGVNNLGSCFGSTGPASINPATGRPWGAAFPVLTVEDWVRAQARVADHF FT GIERFAAVMGGSLGGMQALSWAITCPQRVANCVVVASTPRLSAQNIGFNEVARRAIITD FT PDFHGGDYYAHGTVPGRGLSVARMIGHITYLSDDDMAEKFGRTRREPAADGAYRYGYDV FT EFEVESYLRYQGEKFSRYFDANTYLLITRALDYFDPARATGGDLARALAPATADFLLVS FT FSTDWRFPPERSREMVRALLKNGSPVTYAEIDAPHGHDAFLLDDARYHAVVRGYYERIA FT RELGLNGAVAPEGNSA" FT misc_feature 48148..48225 FT /note="Signal peptide predicted for BP0047 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.412 between residues 26 and 27" FT misc_feature 48481..49332 FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT CDS 49392..50006 FT /transl_table=11 FT /locus_tag="BP0048" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb0939 TR:Q9JZQ6 (EMBL:AE002445) (193 aa) fasta FT scores: E(): 8.9e-38, 56.085% id in 189 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa0389 FT TR:Q9I6A6 (EMBL:AE004476) (206 aa) fasta scores: E(): FT 6.1e-35, 48.705% id in 193 aa" FT /protein_id="CAE40427.1" FT /translation="MSPVSARFEPAALRPDLARIAGWIEPGSRVLDLGCGDGALLAYLR FT DHRQVRGAGVEIDDNYVIACVQRGVEVIQQNLEDGLALFDDQQFDTVVLSQTLQSMHRT FT EHILREMARVARHGVVSFPNFGYWPHGWSILRGRMPVTGQMPYQWYNTPNIHLCTLRDF FT EDLAGTLGLRILQRATFNEGREVRVFPSWRSTLALYRFAAS" FT repeat_region 50040..50071 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 50040..51092 FT CDS 50142..51092 FT /transl_table=11 FT /locus_tag="BP0049" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40428.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 50400..50465 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 50523..51056 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(51061..51092) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 51180..52391 FT /transl_table=11 FT /gene="ampG" FT /locus_tag="BP0050" FT /product="putative integral membrane signal transducer FT protein" FT /note="Similar to Escherichia coli AmpG protein or b0433 or FT z0536 or ecs0487 SW:AMPG_ECOLI (P36670) (491 aa) fasta FT scores: E(): 2.6e-88, 61.168% id in 394 aa, and to FT Neisseria meningitidis putative integral membrane signal FT transducer protein nma2127 TR:Q9JSU7 (EMBL:AL162758) (427 FT aa) fasta scores: E(): 1.9e-44, 42.711% id in 391 aa" FT /protein_id="CAE40429.1" FT /translation="MAPLLVLGFASGLPLALSSGTLQAWATVENVSLQSIGFLTLAGTA FT YTLKFLWAPLIDRYVPPFLGRRRGWMLLTQVLLAAAIMVMGMLSPGSALLPLALVAVLV FT AFLSASQDIAFDAYSTDVLRQEERGAGAAMRVMGYRLAMIVSGGLALIVADRWLGWGNT FT YVLMGGLMLACALGTLWAPEPERPANPPRDLGAAVVEPFREFFSRRGAIDMLLLIVLYK FT LGDAFAGALSTTFLLRGAGFSATEVGTVNKVLGLAATIVGALAGGSIMTRWGLYRSLMA FT FGLLQAVSNLGYWLIAVSPKNLYLMGLAVGVENLCGGLGTASFVALLMAMCRQQFSATQ FT FALLSALAAVGRTYLAGPLTPVLVEWLDWPGFFIVTVLIALPGLWLLRLRRNVIDELDA FT QTAR" FT misc_feature 51180..51257 FT /note="Signal peptide predicted for BP0050 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.441 between residues 26 and 27" FT misc_feature join(51192..51260,51288..51347,51384..51443,51456..51524, FT 51585..51641,51651..51719,51822..51890,51918..51986, FT 51999..52067,52095..52163,52200..52268,52278..52346) FT /note="12 probable transmembrane helices predicted for FT BP0050 by TMHMM2.0 at aa 5-27, 37-56, 69-88, 93-115, FT 136-154, 158-180, 215-237, 247-269, 274-296, 306-328, FT 341-363 and 367-389" FT CDS join(52503..53204,53206..53565) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0051" FT /product="outer membrane porin protein precursor FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 234. The frameshift occurs within FT a homopolymeric tract of (T)3. The sequence has been FT checked and believed to be correct. Similar to Bordetella FT pertussis outer membrane porin protein precursor FT SW:OMP_BORPE (Q04064) (385 aa) fasta scores: E(): 1.2e-13, FT 31.726% id in 394 aa, and to Burkholderia cepacia porin FT protein OpcP1 TR:Q45106 (EMBL:D63823) (361 aa) fasta FT scores: E(): 1.3e-21, 33.073% id in 384 aa" FT /db_xref="PSEUDO:CAE40430.1" FT misc_feature 52503..52562 FT /note="Signal peptide predicted for BP0051 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 20 and 41" FT misc_feature 52512..52580 FT /note="1 probable transmembrane helix predicted for BP0051 FT by TMHMM2.0 at aa 23-45" FT misc_feature 52656..52850 FT /note="HMMPfam hit to PF00267, Gram-negative porin" FT variation 53202..53204 FT /note="(T)3 in pertussis; TTCAT in parapertussis and FT bronchiseptica" FT CDS complement(53623..54357) FT /transl_table=11 FT /locus_tag="BP0053" FT /product="putative aspartate/glutamate racemase" FT /note="Similar to Desulfurococcus sp aspartate racemase FT TR:P71164 (EMBL:D84067) (235 aa) fasta scores: E(): FT 8.8e-20, 34.529% id in 223 aa, and to Pyrococcus abyssi FT aspartate racemase RacD-1 or PAB0912 TR:Q9UYY1 FT (EMBL:AJ248287) (228 aa) fasta scores: E(): 2.3e-20, FT 32.479% id in 234 aa. Its C-terminus is similar to BP1272, FT 55.140% identity (55.140% ungapped) in 107 aa overlap." FT /protein_id="CAE40431.1" FT /translation="MPSDDDKQFEGRFLGVLGGMGPMAGASFMQRLVALTEAACDQQHV FT PAILWNDPRVPDRPAGQSGQGADPLPWMRHGIRRLEQAGATAIAIPCNTAHVWYPQLAQ FT SASVPVLHIVEAVLDDLRRQGIHAGRVGLLATATTLRLGLYQHEMLAQGYEPVVPPVDL FT IDGLCAQSIRLVKQNLLPQALPPALACIDSLRAMGVDAIVLGCTELPLALPHALRAELG FT VAMTDSIDALALAGLGWYRRGG" FT misc_feature complement(53644..54330) FT /note="HMMPfam hit to PF01177, Asp/Glu/Hydontoin racemase" FT misc_feature complement(54067..54093) FT /note="ScanRegExp hit to PS00923, Aspartate and glutamate FT racemases signature 1." FT CDS complement(54363..54953) FT /pseudo FT /transl_table=11 FT /gene="gltL" FT /locus_tag="BP0054" FT /product="glutamate/aspartate transport ATP-binding protein FT (pseudogene)" FT /note="Pseudogene. Similar to Escherichia coli FT glutamate/aspartate transport ATP-binding protein GltL or FT b0652 or z0802 or ecs0691 SW:GLTL_ECOLI (P41076) (241 aa) FT fasta scores: E(): 4e-26, 60.744% id in 242 aa, and to FT Pseudomonas aeruginosa probable ATP-binding component of FT ABC transporter pa1339 TR:Q9I405 (EMBL:AE004563) (244 aa) FT fasta scores: E(): 3.5e-28, 61.066% id in 244 aa. This CDS FT contains an internal deletion relative to its orthologues. FT Similar to several B. pertussis CDSs: BP1181, P3828, FT BP1534, BP1855, BP1575, BP1362, BP0768, and BP1510." FT /db_xref="PSEUDO:CAE40432.1" FT misc_feature complement(54462..54875) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(54645..54689) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(54831..54854) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(54978..55667) FT /transl_table=11 FT /gene="gltK" FT /locus_tag="BP0055" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="Similar to Escherichia coli glutamate/aspartate FT transport system permease protein GltK or b0653 or z0803 or FT ecs0692 SW:GLTK_ECOLI (P41075) (224 aa) fasta scores: E(): FT 1.9e-38, 51.339% id in 224 aa, and to Pseudomonas FT aeruginosa probable permease of ABC transporter pa1340 FT TR:Q9I404 (EMBL:AE004563) (222 aa) fasta scores: E(): FT 1.7e-37, 52.915% id in 223 aa. Similar to BP0767, 56.696% FT identity in 224 aa overlap" FT /protein_id="CAE40433.1" FT /translation="MNEFDFDVIGRSLGYLFRDGMVFTLKLTFLSTAMGLALGTLLAMC FT RLSGIKPLSAVAAAYVNGLRALPLILVIFWFYFLVPYIGGWLTGAGRPLQVGGFTSALI FT TFTLFEAAYFCEIMRAGIQSIPRGQTSAAYAIGLNYWQTMAYVVLPQALRNMAPVLLTQ FT TIVLFQDTSLVYVLSLTDFLGAGINVAQRDNRLVEMYLFVAAVYFVMSFAASRFVHYLQ FT QRNTMAA" FT misc_feature complement(join(55014..55079,55101..55166,55212..55277, FT 55317..55382,55413..55478,55542..55607)) FT /note="6 probable transmembrane helices predicted for FT BP0055 by TMHMM2.0 at aa 20-42, 63-85, 95-117, 130-152, FT 167-189 and 196-218" FT misc_feature complement(55092..55307) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS complement(55664..56458) FT /transl_table=11 FT /gene="gltJ" FT /locus_tag="BP0056" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="Similar to Escherichia coli glutamate/aspartate FT transport system permease protein GltJ or b0654 FT SW:GLTJ_ECOLI (P41074) (246 aa) fasta scores: E(): 1.6e-40, FT 42.623% id in 244 aa, and to Pseudomonas aeruginosa FT probable permease of ABC transporter PA1341 TR:Q9I403 FT (EMBL:AE004563) (248 aa) fasta scores: E(): 6e-44, 47.737% FT id in 243 aa. Similar to BP0766 57.759% identity (58.515% FT ungapped) in 232 aa overlap" FT /protein_id="CAE40434.1" FT /translation="MPSRLRSLDTTMNYNWNWHIFLEMSPTGGIYLGTLLTGMAWTLGT FT AALAWILALGIGIVVGVARTTQSKWARILGATYVEFFRNIPLLVQMFLWYFVVPEILPV FT QLGDAIKSIPPPWGIFIPAVLCLGFYTSSRVAEQVRAGIESRPARQRMAATALGMRPSQ FT VYRYVLLPTSFRIILPPLTSELLNLIKNTSVAFTIGLLELVGAARSMQEFSFQVFEAFA FT GATLCYFLLNLIVLRAMRYIETRLAVPGFIGPVSATTKLAPT" FT misc_feature complement(join(55751..55807,55838..55903,56069..56119, FT 56165..56230,56270..56320,56333..56398)) FT /note="6 probable transmembrane helices predicted for FT BP0056 by TMHMM2.0 at aa 20-42, 46-63, 76-98, 113-130, FT 185-207 and 217-236" FT misc_feature complement(55802..56035) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(55952..56017) FT /note="Predicted helix-turn-helix motif with score 1318 FT (+3.68 SD) at aa 148-169, sequence ARQRMAATALGMRPSQVYRYVL" FT CDS complement(56505..57404) FT /transl_table=11 FT /locus_tag="BP0057" FT /product="amino-acid ABC transporter binding protein FT precursor" FT /note="Similar to Escherichia coli amino-acid ABC FT transporter binding protein precursor YbeJ or b0655 FT SW:YBEJ_ECOLI (P37902) (302 aa) fasta scores: E(): 2.3e-48, FT 45.263% id in 285 aa, and to Pseudomonas aeruginosa FT probable binding protein component of ABC transporter FT PA1342 TR:Q9I402 (EMBL:AE004563) (302 aa) fasta scores: FT E(): 3.4e-51, 48.658% id in 298 aa. Similar to BP0765 FT 51.325% identity (52.013% ungapped) in 302 aa overlap" FT /protein_id="CAE40435.1" FT /translation="MKISTVFFAALVGVAASAPAHAEGRLDKIKSSGTITIGHRDASIP FT FSYLDDKQKPIGYSMEICEKAVEAIKAKLGMAQIKVNLVPVTSSTRIPLVANGTVDLVC FT GSATNTVERQQQVAFAPTTFVTATRFAAKKSSNLKKLDDMKGKTVVSTAGTSNIRWLTQ FT ANEKDSLDMRIIPTKDHPAAMLTVANGRAAAFFMDDVLLAGLVATERKPDEWMISEDTY FT TVEPYALILPKDDPAFKKVVDDTVTGMMRDGSLAKLYKKWFESPIPPRNVNLHLPMSAA FT LQRVIANPTDSADPATYR" FT misc_feature complement(56610..57302) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT misc_feature complement(57339..57404) FT /note="Signal peptide predicted for BP0057 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 22 and 23" FT CDS complement(57498..58448) FT /transl_table=11 FT /locus_tag="BP0058" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40436.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT repeat_region 57498..57529 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(57498..58550) FT misc_feature complement(57534..58067) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(58125..58190) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(58519..58550) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS join(58550..58981,58983..59102) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0059" FT /product="regulatory protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Thiobacillus denitrificans FT regulatory protein CbbR TR:Q9APD4 (EMBL:AF307090) (316 aa) FT fasta scores: E(): 0.00013, 28.148% id in 135 aa, and to FT Streptomyces coelicolor putative LysR-family FT transcriptional regulatory protein scm1.22C TR:Q9RD21 FT (EMBL:AL133422) (301 aa) fasta scores: E(): 0.00026, FT 29.448% id in 163 aa" FT CDS complement(59249..60475) FT /transl_table=11 FT /locus_tag="BP0060" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc2770 TR:Q9A4R0 (EMBL:AE005942) (435 aa) fasta FT scores: E(): 1.6e-10, 28.947% id in 418 aa, and to Erwinia FT amylovora hypothetical 47.8 kDa protein TR:Q9F814 FT (EMBL:AF264948) (427 aa) fasta scores: E(): 2.6e-05, FT 28.453% id in 362 aa" FT /protein_id="CAE40438.1" FT /translation="MATKSLRRQDLEVHLGSTGQVVGRLYLGSGKRSAFSYDERWLRDA FT RFFTLSPDLLPVLSVQHPQEVFFRALEDTAPDSWGERVIRRAHARLRQQDGETPPLEPV FT DFLMWVDDEARVGALRLFDPHAKVYLRSGATPGHVPPLVELDKVVQAARALEAGTETAR FT DLQYLLGQGTSLGGARPKSSVRDTDGRLALGKFPSQADRRDVIRGEVLAMHLAAKAGIK FT VAAARVELIGGTAVAIIRRFDRTDDGGRIPYVSAATMLQSDGRDTVHAYTELVDVLLRE FT GADPIADIHQLWRRLVLNFLICNTDDHLRNTGFLYDSRNHGWRLSPAFDLNPMPGDRRE FT SKTWLTEDSGPIESRDMLMEGAPYFRLAAEEAAAIWTEVAQAVGSWRVVARGLGMQGTD FT LVDFEPAFA" FT CDS complement(60475..60894) FT /transl_table=11 FT /locus_tag="BP0061" FT /product="putative DNA-binding protein" FT /note="Similar to Caulobacter crescentus transcriptional FT regulator Cro/ci family cc2771 TR:Q9A4Q9 (EMBL:AE005942) FT (119 aa) fasta scores: E(): 0.001, 36.458% id in 96 aa, and FT to Bradyrhizobium japonicum Id619 TR:Q9AN22 (EMBL:AF322013) FT (83 aa) fasta scores: E(): 0.11, 34.328% id in 67 aa" FT /protein_id="CAE40439.1" FT /translation="MRMPTSEQRNCSPRVAMPRPVERALQRLGQDISTARRVRRLSQED FT LAQRVGTSLSTVRRMEDGHPGTALHTFLRALHVLGRLDDVLRVMATENDVLGMELVREQ FT LPQRVRTVRGSKPRVGHSAAVKEGASDDADELEGF" FT misc_feature complement(60637..60801) FT /note="HMMPfam hit to PF01381, Helix-turn-helix" FT misc_feature complement(60709..60774) FT /note="Predicted helix-turn-helix motif with score 2078 FT (+6.26 SD) at aa 41-62, sequence LSQEDLAQRVGTSLSTVRRMED" FT CDS complement(61078..62019) FT /transl_table=11 FT /locus_tag="BP0062" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE40440.1" FT /translation="MDTELPSLEHADGGAVIGGAVPELTRAFRMPEAEFRCDFLWDSRL FT VSRPRLLGAFRIRQIAALMLDWLSSEAEVLKRIVANRQALASTMYFALDSAFPYPEHAF FT AQSVYVGINIPRAKLQLSPDQRPGDVDCLIVPFSDNEILLERTIAIEAKIVRPSISNPG FT RNANTMGRAQVRGLLCYGFPFVGLVHISVPESMPSHMHWEVPEISDIAGSNGELIETGE FT YFIFDPFPLASARRQEGRVLALGLPVEVGYRVIALTLSNNGERFCGFTIGEARAGARNP FT VVSHRVLEAVRMLLTTEPHLFEVVHWFNEVGT" FT misc_feature complement(61128..68983) FT /note="low %GC region" FT CDS join(<62059..62328,62328..62411) FT /transl_table=11 FT /locus_tag="BP0063A" FT /product="putative transposase (partial)" FT /note="Similar to the C-terminal regions of Desulfovibrio FT vulgaris transposase OrfB SWALL:O31218 (EMBL:AF034211) (310 FT aa) fasta scores: E(): 6.6e-09, 51.47% id in 68 aa, and to FT Yersinia enterocolitica is1400 transposase B Trp1400B FT SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): FT 1.2e-08, 50% id in 68 aa" FT /protein_id="CAE40441.1" FT /translation="KGIAIRYIQPGKPNQNAFIERFNRTYRTEVLDAHLFANLELVQAI FT TDQWLVDYNQYPSAQIAGRPPADAIHAPVNPRSGRLSDNVYLTGGGLRQQTLMAHCLCL FT DQGPFERPSWSLF" FT CDS complement(62443..63279) FT /transl_table=11 FT /locus_tag="BP0063" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical 29.4 FT kDa protein TR:Q9RPF6 (EMBL:AF161263) (281 aa) fasta FT scores: E(): 1.1e-29, 35.294% id in 272 aa, and to FT Variovorax paradoxus 2,4-diphenoxyacetic acid gene cluster FT TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): FT 3.4e-28, 34.572% id in 269 aa" FT /protein_id="CAE40442.1" FT /translation="MGRALAEQLGRELKQPVIVVNRSGAAGNIGAASVARADNDGYTLL FT MTSAPFAIAPAIFPDLSFHPIKDFTAITQISMVPLLVVTRANSPLNSISDLVAAAKQNE FT DSISFATFGVASPPHLAGQKIQELAGMKMLHIPYKGGSEAITELLSGQVSIGILDVISM FT MPMVKDGKLKALAITGPVRAQALPDVPTLVEAGISYDDVGWFGLFAPAGLSPAITQILN FT VAVNKILAKPEMQKLVVASSTVPITPSTSPGEWQALFNENVRAWGASATEALKEDE" FT CDS complement(63474..64055) FT /transl_table=11 FT /locus_tag="BP0064" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA4336 TR:Q9HW65 (EMBL:AE004850) (194 aa) fasta FT scores: E(): 5.5e-52, 66.492% id in 191 aa, and to FT Agrobacterium tumefaciens Agr_l_853p agr_l_853 TR:AAK88998 FT (EMBL:AE008241) (188 aa) fasta scores: E(): 3.3e-49, FT 63.102% id in 187 aa. Also similar to BP1542, 65.104% FT identity (65.104% ungapped) in 192 aa overlap." FT /protein_id="CAE40443.1" FT /translation="MARKLLMLVGDYVEDYEVMVPFQAFQALGYQVDAVCPDKAAGDYV FT MTAVHDFEGAQTYSEKPGHRFTLNASFDQIEMEKYDGLVIPGGRAPEYLRLNSKLLALV FT RYFFEAEKPVACICHGIQILSTAGVLEGYKCACYNTCAPEVTAAGGTYVDIPMDEAITD FT RNLVTAFAWPSHPAWIAQFATLLGTKITHN" FT misc_feature complement(63495..64049) FT /note="HMMPfam hit to PF01965, ThiJ/PfpI family" FT CDS complement(64068..64370) FT /transl_table=11 FT /locus_tag="BP0065" FT /product="putative ferredoxin" FT /note="Similar to Marinosulfonomonas methylotropha FT ferredoxin TR:AAK84303 (EMBL:AF354805) (123 aa) fasta FT scores: E(): 1.8e-07, 35.955% id in 89 aa, and to FT Burkholderia cepacia Tbc2C monooxygenase TR:Q9EZN9 FT (EMBL:AF282898) (111 aa) fasta scores: E(): 3.6e-07, FT 34.694% id in 98 aa" FT /protein_id="CAE40444.1" FT /translation="MVKACEENEIREGDIVEKKINGLDIILMRNGEQFFAAQAICPHMD FT EKLCNGLFKKTKLICTKHLWQWDLETGKPLGAAEKPIQIYKTTVKEGIVYVGVDN" FT misc_feature complement(64137..64313) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain" FT CDS complement(64489..65550) FT /transl_table=11 FT /locus_tag="BP0066" FT /product="oxidoreductase" FT /note="Similar to Marinosulfonomonas methylotropha FT reductase TR:AAK84310 (EMBL:AF360864) (364 aa) fasta FT scores: E(): 3.5e-26, 29.830% id in 352 aa, and to FT Alcaligenes faecalis ferredoxin reductase phnaA TR:Q9WXG6 FT (EMBL:AB024945) (342 aa) fasta scores: E(): 3.5e-20, FT 29.167% id in 336 aa" FT /protein_id="CAE40445.1" FT /translation="MMQQEQRILFKNDVGDYAAVAAGEESVLQAGLRQSVPLNYHCASG FT SCGSCKARLIQGALKVYTGTDFIQVSHSAGQACECPEVHLCQSHAVSDCVFEALYDKNV FT PPDLAAPKHYAASLNDVRPLGSGLYRLLVDLDDSIRFLPGQYVMLATKAGGRARAYSVA FT NFAQDSRQLEFILSCNPNGAMSPQLCDINNIGMQLQGYGPLGKAYIRPKKDNELVMLVG FT GSGVSVALSTLEWAISSHYIDDRHLTIFWGVRDTSPIDLIGVFNRYAAVHSNLRVAVCS FT DISPSVQDRGRFPYIEFFTGYPADHIVNDASISWEGKEVYISGPPPMVDHTIRQLMINT FT EIDALDIECDSFV" FT misc_feature complement(64546..64911) FT /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding FT domain" FT misc_feature complement(65299..65532) FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature complement(65401..65427) FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT CDS complement(65582..66775) FT /transl_table=11 FT /locus_tag="BP0067" FT /product="integral membrane protein" FT /note="Similar to Pseudomonas aeruginosa probable FT C4-dicarboxylate transporter pa0886 TR:Q9I559 FT (EMBL:AE004523) (427 aa) fasta scores: E(): 2.3e-37, FT 32.812% id in 384 aa, and to Pseudomonas stutzeri probable FT C4-dicarboxylate transporter DctM TR:CAC44173 FT (EMBL:AJ313422) (426 aa) fasta scores: E(): 1.3e-36, FT 32.041% id in 387 aa" FT /protein_id="CAE40446.1" FT /translation="MAATSYWVIDYPLMSMGLTSIDSLKNYTFLAVPLFIATGDLLTAG FT GVSQQLIKFSRAVIRAVPGRTAATSVLASGMFCAISGSSAAAAATMGKLMAPEFKRAQI FT PMRRGGATVAAGGILGGLIPPSTIIIIYSLTVNVSPVELNLAAILPGILILLFIFFVSI FT MRTRQYEPASKSTDGYFKEVGTSVLGATPAFIAIALLFVGLYSGLFSPTEAAGVVTIYC FT AVIGLYWSSQFGIRDIPKILMESASVTGIIGPIVVFSIQFQQILSVMEIPDLILVQLVE FT LSSAYGATVTLAVMMGIVLLFGTFMEVIAVILILAPIFAPIATEIGMNGVHWGMIFIIG FT ASIGFISPPHGLNLFITSMTMKIDYGELMAEIVRMIIPILVAWLIVAAFPYISLVFV" FT misc_feature complement(join(65600..65665,65705..65770,65816..65881, FT 66083..66148,66161..66226,66287..66352,66383..66448, FT 66512..66577,66623..66688)) FT /note="9 probable transmembrane helices predicted for FT BP0067 by TMHMM2.0 at aa 29-51, 66-88, 109-131, 141-163, FT 183-205, 209-231, 298-320, 335-357 and 370-392" FT CDS complement(join(66884..67270,67273..67422)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0068" FT /product="putative membrane protein (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 50. Similar to Caulobacter FT crescentus hypothetical protein Cc1447 TR:Q9A8A7 FT (EMBL:AE005819) (139 aa) fasta scores: E(): 0.83, 28.155% FT id in 103 aa, and to Bacillus halodurans C4-dicarboxylate FT transport system bh2672 TR:Q9K9H5 (EMBL:AP001516) (183 aa) FT fasta scores: E(): 0.25, 24.528% id in 106 aa" FT /db_xref="PSEUDO:CAE40447.1" FT misc_feature complement(join(66959..67015,67052..67117)) FT /note="2 probable transmembrane helices predicted for FT BP0068 by TMHMM2.0 at aa 45-67 and 79-98" FT variation complement(67269..67272) FT /note="(TG)2 in pertussis; (TG)1 in bronchiseptica and FT parapertussis" FT CDS complement(67483..68664) FT /transl_table=11 FT /locus_tag="BP0069" FT /product="putative exported protein" FT /note="Similar to Escherichia coli putative ABC transporter FT periplasmic binding protein YiaO precursor or b3579 FT SW:YIAO_ECOLI (P37676) (328 aa) fasta scores: E(): 2.2e-08, FT 27.046% id in 281 aa, and to Rhizobium meliloti putative FT C4-dicarboxylate transporter periplasmic solute-binding FT protein precursor smb20981 TR:CAC49506 (EMBL:AL603646) (325 FT aa) fasta scores: E(): 4.9e-10, 26.761% id in 284 aa" FT /protein_id="CAE40448.1" FT /translation="MTHSNHNSMRRSTLRKLTGLGMGTILTAGAGAAAVLAPFNSFAKS FT EAKAAYRFRFGTIYTPSAAEYTAPGIYDFVERVQRKSDGEIAIQLIDKAQACSEDQCAQ FT RVMSGILHMGSSTFQNTGATMPYSVALDWPFLWKSRVAYHNFLLSKESNRLYRDVLRNK FT YGVVPLYASGSMRNIMMGKKYSEAADITSPDALNGAKIRITNSEMISNFAKSMGMAPIP FT LAWGELLEGLKSGLVDATETYPSAAAGFGMYSVLSQDIDVQFCPGYSMIFMAAKTFDKL FT PERLQELIYESAYESMVEAYQTSIIAESTLVGIGPNPSPDSAYQRGKIRQIKLSHEQHA FT AFKESGSVENNSQLYANLRKQLDDIAGIDVYGALSEYAKNTSSTELMAEKWWT" FT misc_feature complement(68536..68664) FT /note="Signal peptide predicted for BP0069 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.837 between residues 43 and 44" FT misc_feature complement(68548..68613) FT /note="1 probable transmembrane helix predicted for BP0069 FT by TMHMM2.0 at aa 17-39" FT CDS complement(68685..68984) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0070" FT /product="putative hydroxylase beta subunit (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Methylosulfonomonas FT methylovora hydroxylase beta subunit MsmB TR:Q9X405 FT (EMBL:AF091716) (181 aa) fasta scores: E(): 2.4, 26.923% id FT in 104 aa, and to Pseudomonas aeruginosa ortho-halobenzoate FT 1,2-dioxygenase beta-isp protein OhbA ohbA TR:Q9Z5W2 FT (EMBL:AF121970) (176 aa) fasta scores: E(): 0.017, 22.581% FT id in 93 aa" FT repeat_region 68984..69015 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 68984..70036 FT CDS 69086..70036 FT /transl_table=11 FT /locus_tag="BP0071" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40450.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 69344..69409 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 69467..70000 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(70005..70036) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 70130..70444 FT /transl_table=11 FT /locus_tag="BP0072" FT /product="transposase" FT /note="Similar to Rhizobium meliloti transposase for FT insertion sequence element IsrM1 TR:CAC47072 FT (EMBL:AL591790) (123 aa) fasta scores: E(): 1.1, 21.212% id FT in 99 aa, and to Caulobacter crescentus ISCC3 transposase FT OrfA cc2728 or cc0625 or cc2657 TR:Q99QI0 (EMBL:AE005939) FT (125 aa) fasta scores: E(): 1.2, 27.523% id in 109 aa" FT /protein_id="CAE40451.1" FT /translation="MSMKMEEDIKRWTAKRKSALVLDIIQGKTTVAEASRQYDLSPSEV FT EQWVDDGKRGMENALRANPQDVREQYERQLKDMQEAYGEAMLELRARKKLQSLLGEDEK FT " FT misc_feature 70214..70279 FT /note="Predicted helix-turn-helix motif with score 1232 FT (+3.38 SD) at aa 29-50, sequence TTVAEASRQYDLSPSEVEQWVD" FT repeat_region 70337..70541 FT /note="This region is repeated between positions FT 3018982..3019523" FT CDS 70441..71259 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0073" FT /product="transposase (pseudogene)" FT /note="Pseudogene. This CDS lacks a stop codon. Similar to FT Erwinia herbicola pvgypsophilae OrfB TR:Q9AMM1 FT (EMBL:AF324174) (274 aa) fasta scores: E(): 5.3e-13, FT 28.295% id in 258 aa, and to Caulobacter crescentus FT insertion sequence IS511 orfA and orfB genes, complete CDS FT cc2742 or cc0515 or cc2290 or cc2690 TR:Q45993 FT (EMBL:U39501) (308 aa) fasta scores: E(): 2.8e-14, 31.579% FT id in 266 aa. Note that this CDS is highly similar to the FT 3'end of BP2842" FT misc_feature 70753..71250 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region 70961..71287 FT /note="This region is repeated between positions FT 3018982..3019523" FT tRNA complement(71391..71475) FT /note="tRNA Leu anticodon CAA, Cove score 75.82" FT CDS 71637..73544 FT /transl_table=11 FT /gene="htpG" FT /locus_tag="BP0074" FT /product="heat shock protein" FT /note="Similar to Escherichia coli heat shock protein HtpG FT or b0473 or z0590 or ecs0526 SW:HTPG_ECOLI (P10413) (624 FT aa) fasta scores: E(): 9.1e-145, 59.840% id in 625 aa, and FT to Pseudomonas aeruginosa heat shock protein HtpG or pa1596 FT TR:Q9I3C5 (EMBL:AE004587) (634 aa) fasta scores: E(): FT 9.7e-144, 58.003% id in 631 aa" FT /protein_id="CAE40453.1" FT /translation="MSQTTTTSASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNA FT SDACDKLRFEAIDQPGLLEGDGELAIRVGYDKAARTITISDNGIGLSRDEAVANLGTIA FT RSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADKVTVLSRRAGLAANEAIRWESD FT GQGEFSIAPAEKAGRGTDVVLHLRADEDELLNGWKLREILRRYSDHISLPIRMAKEDWD FT AEKGEQVKGDELETVNQANALWTRNKSDITDEQYREFYKTVSHDYDDPLAWTHNRVEGR FT SEYTQLLYVPKHAPFDLWDRDARRGVKLYVKRVFIMDDAEQLLPSYLRFVRGVIDSADL FT PLNVSREILQESRDVRAIREGSAKRVLSLLEDMAENKAEDYATFWTEFGQVLKEGTGED FT AANRERIARLLRFASTHDGEQAQTVSFADYVGRMKDGQDKIYYVTADTFTAAANSPHLE FT IFRKKGIEVLLLSDRVDEWMLSYLREFDGKSLVSVAKGGLDLAELADEEEKKRQSEVAE FT TFKPLVERLQQALAEQVKEVRVTQRLVDSPACVVVGQNELSPHLLRMLKAAGQEAPEVK FT PVLEINPDHALVARIRDASDAEFGDWAALLLDQALLAEGAQIADPAAFVKRLNGLLLKA FT " FT misc_feature 71727..71756 FT /note="ScanRegExp hit to PS00298, Heat shock hsp90 proteins FT family signature. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature 71733..72206 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature 72210..72293 FT /note="HMMPfam hit to PF00183, Hsp90 protein" FT misc_feature 72324..73532 FT /note="HMMPfam hit to PF00183, Hsp90 protein" FT CDS complement(73706..74326) FT /transl_table=11 FT /locus_tag="BP0075" FT /product="probable glutathione S-transferase" FT /note="Similar to Rhodococcus spAD45 glutathione FT S-transferase IsoJ TR:Q9RBP3 (EMBL:AJ249207) (233 aa) fasta FT scores: E(): 2.2e-12, 30.732% id in 205 aa, and to FT Pseudomonas aeruginosa probable glutathione S-transferase FT pa2813 TR:Q9I030 (EMBL:AE004708) (206 aa) fasta scores: FT E(): 4.6e-39, 48.058% id in 206 aa" FT /protein_id="CAE40454.1" FT /translation="MLKIWGRLSSVNVQKVMWAVRELALPHTFIEAGGQFGGLDTPEYL FT RMNPNRKVPLIDDGGFILWESNAIVRYLGARYGEGAISPADPCVRADADRWMDWQTTEW FT QPSMLAAFMGLVRTAPEQRDAAAIEASARQAGKIALMLENALAGRDFIAGPQFSMGDIA FT LGCAAHRWLGLPVERPATPHISAWYRRLMMRPATQGILTLPLT" FT misc_feature complement(73742..74323) FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain" FT CDS complement(74358..74939) FT /transl_table=11 FT /gene="ampD" FT /locus_tag="BP0076" FT /product="N-acetylmuramoyl-L-alanine amidase" FT /note="Similar to Escherichia coli AmpD protein or b0110 FT SW:AMPD_ECOLI (P13016) (183 aa) fasta scores: E(): 5e-35, FT 51.977% id in 177 aa, and to Pseudomonas aeruginosa FT N-acetyl-anhydromuramyl-L-alanine amidase AmpD or pa4522 FT TR:Q9ZGA0 (EMBL:AF082575) (188 aa) fasta scores: E(): FT 1.9e-37, 58.960% id in 173 aa" FT /protein_id="CAE40455.1" FT /translation="MQRLLLDRHGWLIPGPAVTRAPSPNVNARPAGTQISLLVIHNISL FT PPSQFGGPYVADLFLNRLDYSADPWLERLRGLHVSAHFFIRRDGAVIQFAATEARAWHA FT GVSRFRGRDNCNDFSIGIELEGTDILPYADAQYATLARLAQVLRARYPLADARGHEHIA FT PGRKTDPGRAFNWVRFGRESGFPRRNLPPV" FT misc_feature complement(74406..74777) FT /note="HMMPfam hit to PF01510, N-acetylmuramoyl-L-alanine FT amidase" FT CDS complement(75028..75279) FT /transl_table=11 FT /locus_tag="BP0077" FT /product="putative exported protein" FT /note="Similar to Pseudomonas stutzeri hypothetical 9.0 kDa FT protein TR:Q9RLD2 (EMBL:AJ249642) (77 aa) fasta scores: FT E(): 0.021, 33.333% id in 81 aa" FT /protein_id="CAE40456.1" FT /translation="MGKLIFWFVVILAVLFIARLAGARAASKRAPRAEPPRPAQDAASQ FT PMVRCAHCGVHLPRSEAVLLGGQTWCSSDHARRGAERG" FT misc_feature complement(75211..75267) FT /note="1 probable transmembrane helix predicted for BP0077 FT by TMHMM2.0 at aa 4-23" FT misc_feature complement(75211..75279) FT /note="Signal peptide predicted for BP0077 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.486 between residues 23 and 24" FT CDS complement(75281..76123) FT /transl_table=11 FT /locus_tag="BP0078" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis hypothetical inner FT membrane protein nma2189 TR:Q9JSQ1 (EMBL:AL162758) (268 aa) FT fasta scores: E(): 2.2e-25, 37.184% id in 277 aa, and to FT Azospirillum brasilense hypothetical 28.8 kDa protein in FT nifR3-like 5'region SW:YNR3_AZOBR (P45674) (271 aa) fasta FT scores: E(): 1.6e-13, 31.707% id in 287 aa" FT /protein_id="CAE40457.1" FT /translation="MSSGIVFHAVAALAYAVLAGSLWRRLQGRGSVDQASKLTRTGLLG FT ALALHGVALQQAMLGTQHLYIGWALALSAAVWLGLVVFWLESLLIRIDGLQLLLLPAAA FT IVTAIAALFPQAQLVPHANNPWLRAHLLIALAAYGLITIAALHAMLMALLDRHLHRPLD FT APAERSIVGRVLDAQPPLLVQERLLFRVIWIGFVVLTLAVGSGSVASITLTGKFLPFDH FT KTIFTLLSWATFGVLLLGRHICGWRGRVALRWTLTGFAFLILAYTGSRFVLEVILHRG" FT misc_feature complement(join(75308..75373,75395..75451,75482..75547, FT 75671..75736,75767..75832,75869..75934,75947..75997, FT 76061..76126)) FT /note="8 probable transmembrane helices predicted for FT BP0078 by TMHMM2.0 at aa 26-48, 69-86, 90-112, 124-146, FT 156-178, 219-241, 251-270 and 277-299" FT CDS 76229..77638 FT /transl_table=11 FT /gene="ffh" FT /locus_tag="BP0079" FT /product="signal recognition particle protein" FT /note="Similar to Escherichia coli signal recognition FT particle protein Ffh or b2610 or z3904 or ecs3473 FT SW:SR54_ECOLI (P07019) (453 aa) fasta scores: E(): 1.4e-68, FT 63.169% id in 467 aa, and to Neisseria meningitidis signal FT recognition particle protein Ffh TR:Q9JPK6 (EMBL:AJ391261) FT (456 aa) fasta scores: E(): 2.4e-71, 63.539% id in 469 aa" FT /protein_id="CAE40458.1" FT /translation="MLDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVAL FT PVVRDFVARVKEKALGEEVAGSLSPGQALVGVVHKELTSLMGGDLGEHAGELSLATQPP FT AVILMAGLQGAGKTTTTGKLARWLSEGQHVQGGRKTGKKKVLVVSADVYRPAAIEQLKT FT VAAQVGVDFLPSDVSQKPEDIARNAIDHARRHHYDVLIVDTAGRLGIDEAMMREIRALH FT DLVKPIETLFVVDAMQGQDAVNTARAFGDALPLTGVVLTKLDGDARGGAALSVRHVTGK FT PLKFVGVSEKLDGLEPFHPERMAQRVLGMGDIVSLVEQAQKNIDIAEAQKLASKIKSGN FT KFDLNDFRDQLDQVKKLGDMGSLLEKLPAQLQQAAGQLQGGQAEKQLRRTEGILNSMTP FT GERAKPELIKASRKRRIAAGAGVPVQEVNRLLSQFEQMQGMMKQMKKGGMAKMMRAMGG FT MKGLGRFGGMR" FT misc_feature 76307..77152 FT /note="HMMPfam hit to PF00448, SRP54-type protein, GTPase FT domain" FT misc_feature 76559..76582 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 76985..77002 FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT misc_feature 77072..77113 FT /note="ScanRegExp hit to PS00300, SRP54-type proteins FT GTP-binding domain signature." FT CDS complement(77635..78585) FT /transl_table=11 FT /locus_tag="BP0080" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40459.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 77635..77666 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(77635..78687) FT misc_feature complement(77671..78204) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(78262..78327) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(78656..78687) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 78687..79604 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0081" FT /product="transposase for IS1002 (pseudogene)" FT /note="transposase for IS1002. The N-terminal region of FT this CDS has been deleted by the insertion of a IS481 FT element" FT repeat_region 78687..79604 FT /note="IS1002 element" FT misc_feature 78726..78791 FT /note="Predicted helix-turn-helix motif with score 1627 FT (+4.73 SD) at aa 6-27, sequence WTMRQASQAAGVSLRTGYKWLA" FT misc_feature 79032..79568 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(79579..79604) FT /note="Inverted repeat for IS1002 element" FT CDS complement(79601..81475) FT /transl_table=11 FT /gene="bplL" FT /gene_synonym="wlbL" FT /locus_tag="BP0082" FT /product="lipopolysaccharide biosynthesis protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplL TR:Q45387 (EMBL:X90711) (624 aa) fasta scores: E(): 0, FT 100.000% id in 624 aa, and to Bordetella bronchiseptica FT putative nucleotide sugar epimerase/dehydratase WlbL FT TR:O87995 (EMBL:AJ007747) (624 aa) fasta scores: E(): 0, FT 99.679% id in 624 aa" FT /protein_id="CAE40461.1" FT /translation="MTLPYAIRRLFVDLPRPFKQMLAIVLDAVILLGAFHLALWLRFEL FT FFLTDQYLFLSLLACAGGIAALAAFGVYLYILRYMSERVLAAILGGIVVSVMVVTAGNT FT FLQLATISRGVLVLYAALALVGLIGVRLIARKLLFPADHHMADPRTPVLIYGAGGAGSQ FT LAMALRTGPHYRPVAMLDDDKRKHRLVVNGLRVYPPEQLPKLIDRHNIRQLLIAMPSAP FT PKQIRSIVEAAEPYRLRIRLVPSMRELIDPTNGVRLRDVQVEDLLGRDPVAPIDTLLGR FT CVTDRVVMVTGAGGSIGSELCRQILALRPRKLVLFEIAEPALYAIEQDLRQRIGERNIE FT IAGVLGSVRDAAHCLAQLQEHGVQTIYHAAAYKHVPIVEHNVSEGIRTNAFGTLNMAET FT AIQAGVLDFVLISTDKAVRPTNVMGASKRLAELILQAHAQIQDKTRFSMVRFGNVLGSS FT GSVVPLFRRQILEGGPITLTHPEITRYFMTIPEAAQLVLQAGAMGESGSVFVLDMGEPV FT LIRELAERMVRLYGLTVKNSDQPDGDIEIRITGLRPGEKLYEELLIGEDSRETLHPRIM FT RATEYSLPYETLMGQLRMLDRSLQMCSPRQAAELLGQIVREYASVTYA" FT misc_feature 79605..94272 FT /note="Lipopolysaccharide biosynthesis locus" FT misc_feature complement(79625..81211) FT /note="HMMPfam hit to PF02719, Polysaccharide biosynthesis FT protein" FT misc_feature complement(79946..79981) FT /note="ScanRegExp hit to PS00135, Serine proteases, trypsin FT family, serine active site." FT misc_feature complement(join(80963..81019,81080..81145,81158..81223, FT 81245..81310,81356..81412)) FT /note="5 probable transmembrane helices predicted for FT BP0082 by TMHMM2.0 at aa 21-40, 55-77, 84-106, 110-132 and FT 152-171" FT CDS complement(join(81524..82195,82198..82830)) FT /pseudo FT /transl_table=11 FT /gene="bplJ" FT /gene_synonym="bplK" FT /gene_synonym="wlbjK" FT /locus_tag="BP0083" FT /product="putative integral membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 211. The frameshift occurs within FT a (TG)2 polymeric tract. The sequence has been checked and FT believed to be correct. Previously sequenced in Bordetella FT pertussis as two separate CDSs, BplJ TR:Q45384 FT (EMBL:X90711) and bplK TR:Q45385 (EMBL:X90711). Similar to FT Bordetella bronchiseptica putative integral membrane FT protein WlbjK TR:O87996 (EMBL:AJ007747) (434 aa) fasta FT scores: E(): 6e-171, 97.696% id in 434 aa" FT /db_xref="PSEUDO:CAE40462.1" FT misc_feature complement(join(81614..81679,81701..81766,81797..81853)) FT /note="3 probable transmembrane helices predicted for FT BP0083 by TMHMM2.0 at aa 115-134, 144-166 and 173-195" FT misc_feature complement(join(82171..82227,82297..82362,82408..82473, FT 82495..82560,82576..82632,82726..82791)) FT /note="6 probable transmembrane helices predicted for FT BP0084 by TMHMM2.0 at aa 15-37, 68-87, 92-114, 121-143, FT 158-180 and 203-222" FT variation complement(82196..82199) FT /note="(TG)2 in pertussis; (TG)1 in parapertussis and FT bronchiseptica" FT CDS complement(82823..83527) FT /transl_table=11 FT /gene="bplI" FT /gene_synonym="wlbI" FT /locus_tag="BP0085" FT /product="lipopolysaccharide biosynthesis protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis and Bordetella bronchiseptica DNA for FT lipopolysaccharide biosynthesis locus BplI or WlbI FT TR:Q45383 (EMBL:X90711) (233 aa) fasta scores: E(): FT 6.6e-87, 100.000% id in 233 aa" FT /protein_id="CAE40463.1" FT /translation="MMTLLPLLVIASYSIIHLLEYLSYYARVAGRMAGKPVTGYAIQNA FT TTTVTRFFYLALMPLLGFLVDKQVPTSLYLQMGLAAMFGAALLSLLGYWLRYSWIALLT FT NAVRKRAGQPPLRVEEIRTALEAPASLPKKRIALLAAIVFLCYCLGVLLSYFFALVFHE FT YRSTISQLSGLINGVATVLLTFVLEPRIAGIVDARPTHDVYHAIQAMLNGRLIAIGLLA FT PALFFGVCIGFV" FT misc_feature complement(join(82829..82894,82958..83023,83054..83119, FT 83228..83293,83333..83386,83450..83515)) FT /note="6 probable transmembrane helices predicted for FT BP0085 by TMHMM2.0 at aa 4-26, 47-65, 78-100, 136-158, FT 168-190 and 211-233" FT CDS complement(83524..84696) FT /transl_table=11 FT /gene="bplH" FT /gene_synonym="wlbH" FT /locus_tag="BP0086" FT /product="putative glycosyl transferase" FT /note="Identical to the previously sequenced Bordetella FT parapertussis putative glcnac transferase WlbH TR:O52848 FT (EMBL:AJ224768) (390 aa) fasta scores: E(): 1.1e-153, FT 99.487% id in 390 aa, and to Bordetella pertussis and B. FT bronchiseptica hypothetical 42.8 kDa protein BplH or WlbH FT TR:Q45386 (EMBL:X90711) (390 aa) fasta scores: E(): FT 2.2e-154, 99.744% id in 390 aa" FT /protein_id="CAE40464.1" FT /translation="MLSNVPSRQSPDFAQRTPARVALLGPARSIHTIRWANGLALRGLQ FT VHLLSLETPDLSLYDERIVQYRLPWRAPLGYFLAAPRLRALLKRIDPDLLNVHYATGYG FT LLARRARFSPVLLSAWGSDIYEFPNSSTWHKALLQRNLDHATALAATSHAMQREMRGLT FT RRPIFVTPFGIDEALFQPAQSVQAPAADGPIVIGTVKALETHYGIDTLIQAFALLRQAL FT AASQPGMAERLVLRIYGAGSQLQRLRAQAQAAHIANQVEFKGRIPHAEVPEALRALDVY FT VALSRMDSFGVAILEACSCALPVVVSNADGPAEVVVDGKTGYIVAREDAHAAADRLQEL FT VLNPELRQRLGAAGRARVLSEYTWSKSLDMMLDAYTETARLYRATQPASV" FT misc_feature complement(83626..84162) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(84892..85485) FT /transl_table=11 FT /gene="bplG" FT /gene_synonym="wlbG" FT /locus_tag="BP0087" FT /product="probable sugar transferase" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplG TR:Q45382 (EMBL:X90711) (197 aa) fasta scores: E(): FT 2.6e-77, 100.000% id in 197 aa, and to Bordetella FT bronchiseptica putative transferase WlbG TR:O87997 FT (EMBL:AJ007747) (197 aa) fasta scores: E(): 2.9e-76, FT 98.477% id in 197 aa" FT /protein_id="CAE40465.1" FT /translation="MIKRLFDVVCSGLGLLALLPLLALIAIAIKLDSPGPVFFRQERVG FT KDGVPFRIHKLRSMSVRQDPQAGQITVGADPRITRVGKWIRKWKLDELVQLIDVFTGSM FT SLVGPRPEVPRYVVLYPDALRDLVLSVRPGITDPASIRFRNENEILGQSSDPERTYREI FT ILPEKLRIQAEYVQTRTFLGDLKIIAHTLLAVAR" FT misc_feature complement(84895..85479) FT /note="HMMPfam hit to PF02397, Bacterial sugar transferase" FT misc_feature complement(85399..85464) FT /note="1 probable transmembrane helix predicted for BP0087 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(85402..85485) FT /note="Signal peptide predicted for BP0087 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.704 between residues 28 and 29" FT CDS complement(85482..86714) FT /transl_table=11 FT /gene="bplF" FT /gene_synonym="wlbF" FT /locus_tag="BP0088" FT /product="lipopolysaccharide biosynthesis protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplF TR:Q45381 (EMBL:X90711) (395 aa) fasta scores: E(): FT 2.2e-156, 100.000% id in 395 aa, and to Bordetella FT bronchiseptica putative amino-sugar biosynthesis protein FT WlbF TR:O87998 (EMBL:AJ007747) (395 aa) fasta scores: E(): FT 6.6e-154, 98.734% id in 395 aa" FT /protein_id="CAE40466.1" FT /translation="MPPAARLSLLQRSSTMSDFLPFALPDIGEAEIQAVTESMRSGWLT FT TGPNAREFEREFAAYIGADVEAVAVNSATAGLHLALEAIGVGPGDEVITTTHTFTASAE FT VARYLGAEPVLVDIDPATLCISPAAIERAITPRTRAIVPVHYGGLSCDMDSILEIARKH FT GLKVIEDAAHALPASWQGRRIGSLESDLTVYSFYATKTLATGEGGMVVTRDPALAKRCR FT VMRLHGIDRDAFDRFTSKKPAWYYEIVAPGFKYNMTDTAAAMGRVQLQRVQQMRDRRAQ FT IAAAYDQAFADLPLTLPPGPGRTPGVERVAHRDDDEHSWHLYAIRIHPQAPLKCDDFIV FT RMTENGIGCSVHYVPLHLQPYWRDRYGLTPDMYPHSQAAFEGMASLPIYSRMTDADVQR FT VIASVRQLLRP" FT misc_feature complement(85500..86642) FT /note="HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS family" FT CDS complement(86732..87991) FT /transl_table=11 FT /gene="bplE" FT /gene_synonym="wlbE" FT /locus_tag="BP0089" FT /product="probable glycosyl transferase" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplE TR:Q45380 (EMBL:X90711) (403 aa) fasta scores: E(): FT 1.2e-163, 100.000% id in 403 aa, and to Bordetella FT bronchiseptica putative transferase WlbE TR:O87999 FT (EMBL:AJ007747) (419 aa) fasta scores: E(): 6.7e-170, FT 99.523% id in 419 aa" FT /protein_id="CAE40467.1" FT /translation="MNILLINHYAGSPRYGMEFRPYYFGREWIGHGHQVKVAASTISHI FT RARAPQAGGRLTRENVDGIEYLWYATLPYQGNGARRLLNMLQFSARLYGLRRDLGGWRP FT DIVIASSTHPYDVLPAARLARQTGARLVFEVHDLWPLTPRLLGGFKAWHPMIASMQYAE FT DYAYRHADLTVSMLPCALPYMRERGLDPRRYAHVPNGVPVTEYSSPDFDNPDYLRVRAQ FT IRQLREQCDFVLAYAGTHGHANALDMLLQAMARLRDQPIGLLLLGDGPDKPELKRLAGQ FT LGLRHIAFADPVPRPAVQAVMADIDAAYIGLRRSPLFQFGVSPNKLFDYMLSACPVVQS FT IESGNDIVADARCGLSVPAEDPAALAAALHGLRTLPAAERQAMGRRGRDYVLARHDYPV FT LAQQFLDAVQSVTPRRAASR" FT misc_feature complement(86822..87256) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(88015..89103) FT /transl_table=11 FT /gene="bplD" FT /gene_synonym="wlbD" FT /locus_tag="BP0090" FT /product="UDP-N-acetylglucosamine 2-epimerase" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplD TR:Q45379 (EMBL:X90711) (362 aa) fasta scores: E(): FT 1.8e-139, 100.000% id in 362 aa, and to Bordetella FT bronchiseptica putative UDP-N-acetylglucosamine 2-epimerase FT WlbD TR:O88000 (EMBL:AJ007747) (362 aa) fasta scores: E(): FT 2.3e-138, 99.724% id in 362 aa" FT /protein_id="CAE40468.1" FT /translation="MPKKILTVLGARPQFIKASVVSAAIAQHPELTEVVVHTGQHFDAN FT MSDVFFDELGMQTPAHQLDIHGGGHGDMTGRMLVALEQVMQAEKPDVVLVYGDTNSTLA FT GALAAVKLHIPVAHVEAGLRSFNLRMPEEVNRILTDRISRWLFTPTDSATRHLAAEGQS FT GEKVVQVGDVMYDVALHHGARVTAEGRALAAHGLKPGGYVLATIHRAENTDDAQRLTTI FT VRALQALAAERQVVWPLHPRTWGILARLGLLDELASTVTLLEPVGYLDMVQLEKYAALI FT ATDSGGVQKEAFFHRIPCVTLRDETEWTELVDAGWNRLAPPVSSAVVAQAVQDALREQP FT RDVQPYGDGQAARRIVDALAAH" FT misc_feature complement(88024..88968) FT /note="HMMPfam hit to PF02350, UDP-N-acetylglucosamine FT 2-epimerase" FT misc_feature complement(89035..89103) FT /note="Signal peptide predicted for BP0090 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.817) with cleavage site FT probability 0.795 between residues 23 and 24" FT CDS complement(89111..90211) FT /transl_table=11 FT /gene="bplC" FT /gene_synonym="wlbC" FT /locus_tag="BP0091" FT /product="lipopolysaccharide biosynthesis protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplC TR:Q45378 (EMBL:X90711) (366 aa) fasta scores: E(): FT 6.7e-144, 100.000% id in 366 aa, and to Bordetella FT bronchiseptica putative amino-sugar biosynthesis protein FT WlbC TR:O88001 (EMBL:AJ007747) (366 aa) fasta scores: E(): FT 2.5e-143, 99.454% id in 366 aa" FT /protein_id="CAE40469.1" FT /translation="MQFIDLKTQYQALRDTINPRIQAVLDHGQFIMGPEVKELEAALCA FT YTGAKHCITVASGTEALLISLMALGVKAGDEVITTSFTFVATAEVIALLGAKPVFVDVE FT PDTCNIKVSEIEAKITPRTKAIIPVSLYGQCGDMDEVNAVAARHGLPVIEDAAQSFGAT FT YKGRKSCNLSTIGCTSFFPSKPLGCYGDGGALFTNDDELAQAMREIRVHGQSGRYYHAR FT IGVGGRMDTLQCAVVLGKLERFDWEIAQRIKIGARYQQLLADLPGGACTVTVRPDRDSV FT WAQFTVMVPNREAVIAQLKEAGIPTAVHYPRPIHAQPAYEQYAEGAGATPVSDDLAARV FT MSLPMHPDLDEATQDKIVAALRQALN" FT misc_feature complement(89126..90181) FT /note="HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS family" FT CDS complement(90215..90790) FT /transl_table=11 FT /gene="bplB" FT /gene_synonym="wlbB" FT /locus_tag="BP0092" FT /product="probable acetyltransferase" FT /note="Identical to the previously sequenced Bordetella FT pertussis and Bordetella bronchiseptica DNA for FT lipopolysaccharide biosynthesis locus BplB or WlbB FT TR:Q45377 (EMBL:X90711) (191 aa) fasta scores: E(): FT 4.3e-79, 100.000% id in 191 aa, and to Pseudomonas FT aeruginosa probable acetyltransferase WbpD TR:P72135 FT (EMBL:U50396) (163 aa) fasta scores: E(): 4.2e-48, 77.483% FT id in 151 aa" FT /protein_id="CAE40470.1" FT /translation="MTTIHPTAIVDEGARIGANSRIWHWVHICGGAEIGAGCSLGQNVF FT VGNRVRIGDRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKNEYRDTLVR FT QGATLGANCTIVCGATVGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQLDL FT PLAGNGQARCPHTGDLYILENGVCRLGE" FT misc_feature complement(90230..90256) FT /note="ScanRegExp hit to PS00572, Glycosyl hydrolases FT family 1 active site." FT misc_feature complement(90422..90475) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(90593..90646) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(90647..90700) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(90701..90754) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT CDS complement(90794..91846) FT /transl_table=11 FT /gene="bplA" FT /gene_synonym="wlbA" FT /locus_tag="BP0093" FT /product="probable oxidoreductase" FT /note="Identical to Bordetella pertussis and Bordetella FT bronchiseptica DNA for lipopolysaccharide biosynthesis FT locus BplA or WlbA TR:Q45376 (EMBL:X90711) (350 aa) fasta FT scores: E(): 1.2e-144, 100.000% id in 350 aa, and similar FT to Vibrio anguillarum putative dehydrogenase TR:Q9XBT9 FT (EMBL:AF156256) (318 aa) fasta scores: E(): 3.8e-83, FT 63.722% id in 317 aa" FT /protein_id="CAE40471.1" FT /translation="MSSLPITDRKIRFGLVGCGRISKNHIGAIAQHGDRAELVEICDTN FT PEALQAAEAATGARPFSSLSDMLAQGNADALVLATPSGLHPWQAIEVAQAGRHVVSEKP FT MATRWEDGKRMVKACDEAGVRLFVVKQNRRNATLQLVKKAIEQGRFGRIYMVTVNVFWT FT RPQEYYDAARWRGKWEWDGGAFMNQASHYVDLLDWLVGPVESVYAYTATLARRIEAEDT FT GVAALRWRHGAMGSINVTMLTYPQNLEGSITILGEKGTVRVGGVAVNRIDEWKFAEPHP FT DDDKIREANYETTSVYGFGHPLYYDNVINCLRGDCEPETDGREGLQSLALLTAIYRSAR FT DGVRIPLPLD" FT misc_feature complement(91076..91816) FT /note="HMMPfam hit to PF01408, Oxidoreductase family, FT NAD-binding Rossmann fold" FT CDS 91977..92984 FT /transl_table=11 FT /gene="rfaC" FT /gene_synonym="waaC" FT /locus_tag="BP0094" FT /product="probable heptosyltransferase" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT RfaC TR:Q45375 (EMBL:X90711) (335 aa) fasta scores: E(): FT 6.2e-133, 100.000% id in 335 aa, and to Bordetella FT bronchiseptica putative heptosyltransferase WaaC TR:O88002 FT (EMBL:AJ007747) (335 aa) fasta scores: E(): 1.3e-132, FT 99.701% id in 335 aa, and Similar to Escherichia coli FT lipopolysaccharide heptosyltransferase-1 RfaC or WaaC or FT Rfa-2 or B3621 SW:RFAC_ECOLI (P24173) (319 aa) fasta FT scores: E(): 7.6e-31, 48.485% id in 297 aa" FT /protein_id="CAE40472.1" FT /translation="MPNRILIVRTSSLGDLVHMLPAISDIARYVPDTQIDWVAEEAFAD FT IPKWHPAVNEVIKVAHRRWRKAWWSEPVRQERRALAERLRSVSYDVVLDMQGLLKSAWL FT VRQTRGVRHGLDWRSAREPLVSLFYNVRHRVEFWQPAVVRQRKLAALTFGYNYAGSPDF FT GLQAFGRAAQADDAPADPGRRMLHLAADRGYAVIMPSASRDDKLWPEDDWRAVFRRLQD FT AGCALRLLAGNEQEAERARVLVAGMEGVEVLPRMDLTSVAQVLAGARLMVGLDSGLTHL FT SAALGRPTIGIYRASTPVRTPLVGPSYTASLGDRGASPSREAVLASVEQALAAA" FT misc_feature 92205..92963 FT /note="HMMPfam hit to PF01075, Glycosyltransferase family 9 FT (heptosyltransferase)" FT CDS 92986..94272 FT /transl_table=11 FT /gene="kdtA" FT /gene_synonym="waaA" FT /locus_tag="BP0095" FT /product="3-deoxy-D-manno-octulosonic-acid transferase" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT KdtA TR:Q45374 (EMBL:X90711) (428 aa) fasta scores: E(): FT 2.9e-167, 100.000% id in 428 aa, and to Bordetella FT bronchiseptica putative 3-deoxy-D-manno-octulosonic-acid FT transferase WaaA TR:O88003 (EMBL:AJ007747) (428 aa) fasta FT scores: E(): 2.1e-166, 99.533% id in 428 aa, and similar to FT Escherichia coli 3-deoxy-D-manno-octulosonic-acid FT transferase KdtA or WaaA or B3633 or Z5057 or ECS4508 FT SW:KDTA_ECOLI (P23282) (425 aa) fasta scores: E(): 8.9e-46, FT 39.450% id in 436 aa" FT /protein_id="CAE40473.1" FT /translation="MGRGVYTLALRGLAPLIWLWMWRRARRAGGQWELFAPARFGRAGA FT RAPAPLAAPVWVHAVSLGETRAAQPLVQALLERGLPVLLTHTTATGRAEGERLFGAAIG FT RGQLQQAWLPYDFPGATRRFLARHAPRCGLLMEREVWPNLLAAARAQGVPMALVSARFS FT ASSLRQAGWLGQALREALAGLDRVLAQTDEDGARLCQAGANAYTVTGSLKFDVALPEAQ FT LRVGHAWAGATGRPVIALASTREGEDAMFIEAIGALQAHRAATPRPLILLIPRHPQRFD FT EAAAQLQAAGLAYARRSAGSGEPGPHIDVLLGDTLGEMPFYYAAADVAIVGGSFARLGG FT QNLIEACAAGTPVIVGPHTFNFKDAARDAIAAGAALRAPDARTALDWALQLLAEPARRQ FT AMSEAARAWTAAHAGATRRTLDALEDWLG" FT misc_feature 93937..94209 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(94289..94444) FT /transl_table=11 FT /locus_tag="BP0096" FT /product="putative exported protein" FT /note="Identical to the previously sequenced Bordetella FT bronchiseptica putative secreted protein Bblps1.35C FT TR:O88004 (EMBL:AJ007747) (51 aa) fasta scores: E(): FT 2.6e-20, 100.000% id in 51 aa" FT /protein_id="CAE40474.1" FT /translation="MRILFLLIVAANLWVYALGQGWLGLRPADEGRDAARLNQEMKADQ FT VKVLRP" FT misc_feature complement(94370..94435) FT /note="1 probable transmembrane helix predicted for BP0096 FT by TMHMM2.0 at aa 3-25" FT misc_feature complement(94388..94444) FT /note="Signal peptide predicted for BP0096 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.879) with cleavage site FT probability 0.698 between residues 19 and 20" FT CDS complement(94469..95272) FT /transl_table=11 FT /gene="baf" FT /locus_tag="BP0097" FT /product="Bvg accessory factor" FT /note="Identical to the previously sequenced Bordetella FT pertussis Bvg accessory factor Baf SW:BAF_BORPE (Q45338) FT (267 aa) fasta scores: E(): 4.3e-103, 100.000% id in 267 FT aa, and to Bordetella bronchiseptica Bvg accessory factor FT Baf or Bblps1.36C SW:BAF_BORBR (O88005) (54 aa) fasta FT scores: E(): 2.6e-14, 96.296% id in 54 aa" FT /protein_id="CAE40475.1" FT /translation="MIILIDSGNSRLKVGWFDPDAPQAAREPAPVAFDNLDLDALGRWL FT ATLPRRPQRALGVNVAGLARGEAIAATLRAGGCDIRWLRAQPLAMGLRNGYRNPDQLGA FT DRWACMVGVLARQPSVHPPLLVASFGTATTLDTIGPDNVFPGGLILPGPAMMRGALAYG FT TAHLPLADGLVADYPIDTHQAIASGIAAAQAGAIVRQWLAGRQRYGQAPEIYVAGGGWP FT EVRQEAERLLAVTGAAFGATPQPTYLDSPVLDGLAALAAQGAPTA" FT CDS complement(95269..96135) FT /transl_table=11 FT /gene="birA" FT /locus_tag="BP0098" FT /product="putative biotin protein ligase" FT /note="Identical to the previously sequenced Bordetella FT pertussis putative biotin protein ligase BirA TR:Q9ZIU6 FT (EMBL:AF016461) (288 aa) fasta scores: E(): 1.2e-110, FT 100.000% id in 288 aa, and Similar to Escherichia coli BirA FT bifunctional protein [includes: biotin operon repressor; FT biotin--[acetyl-coa-carboxylase] synthetase BirA or BioR or FT DhbB or B3973 SW:BIRA_ECOLI (P06709) (321 aa) fasta scores: FT E(): 9.5e-13, 32.130% id in 277 aa" FT /protein_id="CAE40476.1" FT /translation="MGAITIAPMSAEVRSLSLPEPAALARAIAARLPAFRDISWVGSTG FT STNADLLARARAGGGARPCLLGAHLQETGRGRAGRPWQNRVGAALMFSCAFDVDLPPSQ FT LPALSPLAGMAACEALRQLVGQPAGLLVKWPNDVQWHDAKLAGVLVESVRNPAGTGHAV FT VIGMGLNLHGGDALSQALQRSVADWNDVAGPGEKGPDAAADLVAAVARAWQDAAHTLQQ FT EGFGAFGARFARVDALAGRPVNVIDRGEILYTGAASGVDDHGRLLVQAADGMRPVSVGE FT ISIRPQA" FT misc_feature complement(95281..95424) FT /note="HMMPfam hit to PF02237, Biotin protein ligase C FT terminal domain" FT misc_feature complement(95497..96021) FT /note="HMMPfam hit to PF01317, Biotin protein ligase FT catalytic domain" FT CDS 96210..97340 FT /transl_table=11 FT /locus_tag="BP0099" FT /product="putative integral membrane protein" FT /note="Similar to Caulobacter crescentus putative ABC FT transporter, permease protein, Cc2318 TR:Q9A5X9 FT (EMBL:AE005902) (371 aa) fasta scores: E(): 2.2e-35, FT 35.925% id in 373 aa, and to Campylobacter jejuni putative FT ABC transport system permease protein iamb or cj1646 FT TR:Q9PM30 (EMBL:AL139079) (369 aa) fasta scores: E(): FT 3.2e-31, 34.451% id in 328 aa" FT /protein_id="CAE40477.1" FT /translation="MPSLPSTAGAATLSLTLDHGVCHVSGDWSMQALAAPGEVERRRAA FT LARVDPDQRWDLRGVERLDTIGAHLLWGAWGQQLPERVRWSDGQREVFQTLQRNRGEAL FT PAPAPADRWGWLRAIGDAVFDAGRNGRALVIMFGQLVLDLGAFLRRPSRGPWREISAQV FT YRTGAQALGITALVGFLIGVVLSYLSAQQLQMFGADRFIVRLLGVSIVRELGPVLAAIL FT VAGRSGSAITAQIGVMRVTQELDAMLVMGISHGQRLILPRVIALAITMPLLVVWTDAMA FT LLGGMLAAQMQLGVSAQWFLTSLPDAISLTNYWIGMFKGVSFGILIALVACHFGLCIQP FT NTESLGRGTTTSVVTSITGVILVDALYAVIFSSIGI" FT misc_feature 96210..96311 FT /note="Signal peptide predicted for BP0099 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.932) with cleavage site FT probability 0.911 between residues 34 and 35" FT misc_feature 96585..97325 FT /note="HMMPfam hit to PF02405, Domain of unknown function FT DUF140" FT misc_feature join(96711..96779,97023..97091,97149..97217,97254..97322) FT /note="4 probable transmembrane helices predicted for FT BP0099 by TMHMM2.0 at aa 168-190, 272-294, 314-336 and FT 349-371" FT CDS 97340..98179 FT /transl_table=11 FT /locus_tag="BP0100" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="Similar to Pseudomonas aeruginosa probable FT ATP-binding component of ABC transporter Pa3212 TR:Q9HZ28 FT (EMBL:AE004744) (264 aa) fasta scores: E(): 1.3e-42, FT 54.251% id in 247 aa, and to Caulobacter crescentus ABC FT transporter, ATP-binding protein cc2319 TR:Q9A5X8 FT (EMBL:AE005902) (278 aa) fasta scores: E(): 2e-42, 54.032% FT id in 248 aa" FT /protein_id="CAE40478.1" FT /translation="MGSVAQQNLFSATDLAVAPVIAVRGLRTAFGDHVVHDNLDLSVYP FT GEILALVGGSGTGKTVLLRQIIGLERPAAGTIEVLGRRVQELEPAERRRLSHRWGMLFQ FT AGALFSSLSVFDNVALPLRELRTVPEDLVCDVVMCRLAMVGLTSKDADKRPADLSGGMV FT KRVALARALSLDPELLFLDEPTAGLDPLRSDEFVDLVRSLHRQLGFTVVMVTHDLDTLL FT ALATRVAVLADKRVIVCDTVREVLKVDHPFIRSFFLGERGRRALGDLAPKETGNGKP" FT misc_feature 97475..98041 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 97496..97519 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 97556..97609 FT /note="ScanRegExp hit to PS00216, Sugar transport proteins FT signature 1." FT CDS join(98166..98852,98854..99111) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0101" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 229. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa hypothetical protein Pa3213 TR:Q9HZ27 FT (EMBL:AE004744) (312 aa) fasta scores: E(): 2.3e-13, FT 28.115% id in 313 aa, and to Campylobacter jejuni possible FT ABC transport system periplasmic substrate-binding protein FT Cj1648 TR:Q9PM28 (EMBL:AL139079) (296 aa) fasta scores: FT E(): 3.8e-11, 28.634% id in 227 aa" FT /db_xref="PSEUDO:CAE40479.1" FT misc_feature 98166..98240 FT /note="Signal peptide predicted for BP0101 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.352 between residues 25 and 26" FT misc_feature 98193..98597 FT /note="HMMPfam hit to PF02470, mce related protein" FT variation 98850..98851 FT /note="CA in pertussis; CA(GG) in parapertussis and FT bronchiseptica" FT CDS 99112..99714 FT /transl_table=11 FT /locus_tag="BP0101A" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens Agr_c_3031p FT TR:AAK87420 (EMBL:AE008086) (201 aa) fasta scores: E(): FT 2.5e-05, 31.551% id in 187 aa, and to Rhizobium meliloti FT hypothetical protein Smc00177 TR:CAC46409 (EMBL:AL591788) FT (204 aa) fasta scores: E(): 0.00019, 28.042% id in 189 aa" FT /protein_id="CAE40480.1" FT /translation="MDMKKAIIVLSALLLAGCGAGRMAAPPALFDLGADVAATPALPAR FT QPIVLAFEAVPYLSDTGVIWRVGDSASPHAYARSRWASAPAELVRQRLVERLSHQGPVL FT GAGMGAGLAQVQVTLTFEQVFAADGQASVGHVAMQAVLLQDRQVVGQVRIAREAPAATQ FT DAAGGVQALRQATDAAADELAGWLAGRVAAAGARAGS" FT misc_feature 99112..99183 FT /note="Signal peptide predicted for BP0101 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.988 between residues 24 and 25" FT misc_feature 99133..99165 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 99744..100397 FT /transl_table=11 FT /locus_tag="BP0101B" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb0868 TR:Q9JZW7 (EMBL:AE002439) (213 aa) fasta FT scores: E(): 4.5e-24, 43.578% id in 218 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa4440 FT TR:Q9HVX5 (EMBL:AE004858) (209 aa) fasta scores: E(): FT 2.9e-19, 40.909% id in 220 aa" FT /protein_id="CAE40481.1" FT /translation="MSARTETQVFTGAAGSIDCAIDWPAHAPRGWALVLHPHSLQGGAR FT DNKVVTTVARACVQHGLAAVRPNFRGVGESAGEFDKSIGETEDMLALVAQVRERYPEFA FT ASPWVLGGFSFGTAVAAQTYAALAASGDPSLPRALMLMGPAVNRFERSATEVPADTLLV FT HGEVDDVVPLAEALEWARPRSLPVVVVPGASHFFHGKLLVLRQLVQDRLRIALD" FT CDS 100530..101786 FT /transl_table=11 FT /locus_tag="BP0102" FT /product="putative penicillin-binding protein precursor" FT /EC_number="3.4.16.4" FT /note="Similar to Escherichia coli penicillin-binding FT protein 6 precursor DacC or B0839 SW:DACC_ECOLI (P08506) FT (400 aa) fasta scores: E(): 3.9e-51, 46.703% id in 364 aa, FT and to Pseudomonas aeruginosa penicillin-binding protein 5 FT precursor DacA or DacC or PA3999 TR:Q9X6V7 (EMBL:AF147448) FT (386 aa) fasta scores: E(): 1.3e-54, 45.528% id in 369 aa" FT /protein_id="CAE40482.1" FT /translation="MKTLPDTAIAPVVLSRRVLASAVLAAMLAAAAPAGAQQQAAPATP FT VAAAAPAAGGAVGAVGDLAAVPVPTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKI FT MTAYVVFNALQEKRLTLEQQVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGND FT ASVALAEAVGGSESAFAALMNQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAAHL FT ISDYPDYYHYYKQKSYTYNKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGD FT RRILTVLVGADSEATRAEESLKLLNWSFQNFDTVKLYDQSQPGLDARVWEGKVENVKLG FT PPNPVWLAVPRGKAAEIKPVAQRTDPLVAPLTKGQQVGTLQLTLDGKTLRVEPLVVQED FT VERAGFFGRMADTVKRWFQ" FT misc_feature 100530..100637 FT /note="Signal peptide predicted for BP0102 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.908 between residues 36 and 37" FT misc_feature 100704..101471 FT /note="HMMPfam hit to PF00768, D-alanyl-D-alanine FT carboxypeptidase" FT CDS 101834..102733 FT /transl_table=11 FT /locus_tag="BP0103" FT /product="probable class IV aminotransferase" FT /note="Similar to Staphylococcus aureus D-alanine FT aminotransferase TR:Q9KWZ6 (EMBL:Y14816) (282 aa) fasta FT scores: E(): 3.7e-37, 38.849% id in 278 aa, and to FT Staphylococcus haemolyticus D-alanine aminotransferase Dat FT SW:DAAA_STAHA (P54694) (282 aa) fasta scores: E(): 1.1e-38, FT 38.989% id in 277 aa" FT /protein_id="CAE40483.1" FT /translation="MPAPILSKELPMIPGMPGDSQVYLNGEFTRLDEAKISVLDRGFIF FT GDGIYEVVPVYDGKVFRMTEHLNRLDRSLAALRIAAPMDRAGWESVIAGLIARSAQPTC FT IIYLQVTRGVCKRDHAFPTEPITPTVFGMAAAFSPPGAAQRTQGLSAIAIDDERWLHCE FT IKSVSLLGNVLAKQQAVDAGVDEVVQFRDGWLTEGSSTNIWVVSGGKLLAPPKNNLILE FT GIRYGLMGELAEAAGLPFEARRISREEVLAADELMLTSATKEVLPIVRLDGKAVGAGKP FT GPVYEQLRAGYDARIAAL" FT misc_feature 101906..102712 FT /note="HMMPfam hit to PF01063, Aminotransferase class IV" FT CDS 102809..103084 FT /transl_table=11 FT /locus_tag="BP0104" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma1380 or Nmb1218 TR:Q9JRI4 (EMBL:AL162755) (91 FT aa) fasta scores: E(): 4.4e-11, 46.988% id in 83 aa, and to FT Escherichia coli hypothetical protein YbeD or B0631 or FT Z0776 or ECS0669 SW:YBED_ECOLI (P30977) (87 aa) fasta FT scores: E(): 4.4e-06, 38.554% id in 83 aa" FT /protein_id="CAE40484.1" FT /translation="MHNIPPEESLIEYPSDFPIKVMGKQHPEFAQTLTEVVLQFDPGFD FT PASVEMRPSKGGNYLGLTFTVRATSREQLDSLYRALHGHPMVSIVL" FT CDS 103092..103754 FT /transl_table=11 FT /gene="lipB" FT /locus_tag="BP0105" FT /product="lipoate-protein ligase B" FT /EC_number="6.-.-.-" FT /note="Similar to Escherichia coli lipoate-protein ligase B FT LipB or B0630 SW:LIPB_ECOLI (P30976) (213 aa) fasta scores: FT E(): 3.3e-32, 54.386% id in 171 aa, and to Vibrio cholerae FT lipoate-protein ligase B LipB or VC0944 SW:LIPB_VIBCH FT (Q9KTF8) (219 aa) fasta scores: E(): 2.1e-34, 50.500% id in FT 200 aa" FT /protein_id="CAE40485.1" FT /translation="MIKWLARPADYASVWDAMKTFTAARGPGTADEIWLCEHAPVYTLG FT QVGRPEHLLNPGLIPVVHCDRGGQVTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQAT FT LATLRELGLEQACRKPGAPGIYVPQPGGELAKIAALGVKVRNGYAYHGLALNIDMDLSP FT FLGINPCGYEGLRTVDLAACGVRTSVERAGELLAAQLARAHGQAVQQRAAALAGVPG" FT misc_feature 103158..103604 FT /note="HMMPfam hit to PF02111, Lipoate-protein ligase B" FT misc_feature 103287..103334 FT /note="ScanRegExp hit to PS01313, Lipoate-protein ligase B FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 103816..104817 FT /transl_table=11 FT /gene="lipA" FT /gene_synonym="lip" FT /locus_tag="BP0106" FT /product="lipoic acid synthetase" FT /note="Similar to Escherichia coli lipoic acid synthetase FT LipA or Lip or B0628 SW:LIPA_ECOLI (P25845) (321 aa) fasta FT scores: E(): 5.8e-77, 63.091% id in 317 aa, and to FT Burkholderia pseudomallei lipoate synthetase TR:Q9EYP3 FT (EMBL:AF317284) (288 aa) fasta scores: E(): 9.7e-90, FT 83.333% id in 282 aa" FT /protein_id="CAE40486.1" FT /translation="MSTLVESPVPSNDSQAAAPAAYDPTQKQKSQAKTARIPIKVVAAE FT KLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTATFMIMGD FT KCTRRCPFCDVGHGRPDPLDTQEPENLARTIAALKLSYVVITSVDRDDLRDGGAAHFVE FT CIAKVREYSPDTRIEVLVPDFRGRLDRALHILNSGPPDVMNHNLETVPRLYKQARPGSD FT YAHSLKLLAEFKKLHPEVPTKSGLMLGLGETDEEILQVMRDMREHNVDMLTIGQYLQPS FT EHHLPVLRYVHPDTFAMFEREAYAMGFTHAAVGAMVRSSYHADQQAHAAGVN" FT misc_feature 104026..104793 FT /note="HMMPfam hit to PF02546, Lipoate synthase" FT CDS complement(104832..105380) FT /transl_table=11 FT /gene="rfbC" FT /gene_synonym="rmlC" FT /locus_tag="BP0107" FT /product="dTDP-4-dehydrorhamnose 3,5-epimerase" FT /EC_number="5.1.3.13" FT /note="Similar to Escherichia coli dTDP-4-dehydrorhamnose FT 3,5-epimerase RfbC or RmlC or B2038 SW:RFBC_ECOLI (P37745) FT (185 aa) fasta scores: E(): 8.2e-34, 52.326% id in 172 aa, FT and to Pseudomonas aeruginosa dTDP-4-dehydrorhamnose FT 3,5-epimerase RmlC or PA5164 TR:Q9HU21 (EMBL:AE004929) (181 FT aa) fasta scores: E(): 4.6e-49, 64.641% id in 181 aa" FT /protein_id="CAE40487.1" FT /translation="MKLTPLAIADVVLIEPQVFGDERGCFFESFNQDRLDAQLGRRIRF FT VQDNHSCSRAGVLRGLHYQILHPQAKLVRVVAGEAYDVAVDLRRGSPTFGRWTGAYLSA FT RNRHQLWIPEGFAHGFLALSDDTECLYKATDYYAPEHERCVRWDDPQLKVDWPLQGQAP FT ILSVKDRQGVALARADTYA" FT misc_feature complement(104847..105374) FT /note="HMMPfam hit to PF00908, dTDP-4-dehydrorhamnose FT 3,5-epimerase" FT CDS complement(105438..106334) FT /transl_table=11 FT /gene="rfbD" FT /gene_synonym="rmlD" FT /locus_tag="BP0108" FT /product="dTDP-4-dehydrorhamnose reductase" FT /EC_number="1.1.1.133" FT /note="Similar to Escherichia coli dTDP-4-dehydrorhamnose FT reductase RfbD or RmlD or B2040 SW:RBD1_ECOLI (P37760) (299 FT aa) fasta scores: E(): 2.6e-40, 44.444% id in 297 aa, and FT to Pseudomonas aeruginosa dTDP-4-dehydrorhamnose reductase FT RmlD or PA5162 TR:Q9HU23 (EMBL:AE004929) (302 aa) fasta FT scores: E(): 7.8e-44, 47.651% id in 298 aa" FT /protein_id="CAE40488.1" FT /translation="MNILLLGRTGQIGDALLAHPPAWARLAALDRRQADLRDLGRLAAV FT LDAYAPRILINAAAYTEVDRAEAEPELALRINAQAVAVMADYARRNNALLVHYSTDYVF FT DGKRARAYRETDAAHPLNAYGRSKLAGEQAIAASGCPHLILRTSWVYASHGANFVKTIL FT RLARTRAELSVVADQHGAPIWAGRIAAVTWQAIDAHRRRRLPDGLWHLSAGGHVSWHGL FT ACHIVARARRAGLALSLDPAHIRPVTAAQYPLPAPRPANSRLDCGALRDALEPELPDWQ FT VDLDAVVDALAARAHTL" FT CDS complement(106331..107392) FT /transl_table=11 FT /gene="rfbB" FT /gene_synonym="rmlB" FT /locus_tag="BP0109" FT /product="dTDP-glucose 4,6-dehydratase" FT /EC_number="4.2.1.46" FT /note="Similar to Escherichia coli dTDP-glucose FT 4,6-dehydratase RfbB or RmlB or B2041 SW:RBB1_ECOLI FT (P37759) (361 aa) fasta scores: E(): 4.6e-73, 52.925% id in FT 359 aa, and to Pseudomonas aeruginosa dTDP-D-glucose FT 4,6-dehydratase RmlB or PA5161 TR:Q9HU24 (EMBL:AE004929) FT (352 aa) fasta scores: E(): 4e-92, 64.672% id in 351 aa" FT /protein_id="CAE40489.1" FT /translation="MSILVTGGAGFIGSNFVLGWLASGDEPVINLDLLTYAGNAANLAA FT LRDDPRHLLVHGDIADAPLVRRLLREHRPRAIVNFAAESHVDRAIRAPDAFVQTNVVGT FT FTLLEAARAYCTEQDAAAAAAFRFLHVSTDEVYGSLAPQAAPFTETHPYQPNNPYSASK FT AASDHMVRSYRHTYGLPAITTHCCNNYGPRQFPEKLIPLVIHHALAGRALPLYGDGMHV FT RDWLYVVDHCAALECVLRDGQPGQTYNIGAHCERTNLEVVHAVCALLDQWRARPDGQPH FT AGGIAFIPERPGHDRRYAIDAGKIQRELGWRAATSFEAGLRETVRWYLDHPQWVADIAS FT GAYRHWLDTHYGT" FT misc_feature complement(106397..107386) FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family" FT misc_feature complement(106871..106957) FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT CDS complement(107428..108378) FT /transl_table=11 FT /locus_tag="BP0110" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40490.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHN" FT repeat_region 107428..107455 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(107428..108480) FT misc_feature complement(107464..107997) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(108055..108120) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(108449..108480) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(join(108477..109043,109045..109104)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0111" FT /product="putative membrane protein (pseudogene)" FT /note="Similar to Bacillus halodurans hypothetical protein FT Bh0429 SWALL:Q9KFP9 (EMBL:AP001508) (207 aa) fasta scores: FT E(): 7.9e-30, 46.5% id in 200 aa." FT /db_xref="PSEUDO:CAE40491.1" FT misc_feature complement(join(108486..108542,108579..108644, FT 108690..108755,108840..108905,108936..109001)) FT /note="5 probable transmembrane helices predicted for FT BP0111 by TMHMM2.0 at aa 7-29, 39-61, 89-111, 126-148 and FT 160-179" FT misc_feature complement(108567..108896) FT /note="HMMPfam hit to PF01810, LysE type translocator" FT misc_feature complement(108903..109022) FT /note="Signal peptide predicted for BP0111 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.944) with cleavage site FT probability 0.242 between residues 40 and 41" FT CDS 109278..110471 FT /transl_table=11 FT /gene="metC" FT /locus_tag="BP0112" FT /product="cystathionine beta-lyase" FT /EC_number="4.4.1.8" FT /note="Similar to Bordetella avium cystathionine beta-lyase FT MetC SW:METC_BORAV (Q07703) (395 aa) fasta scores: E(): FT 1.1e-130, 79.747% id in 395 aa, and to Escherichia coli FT cystathionine beta-lyase MetC or B3008 SW:METC_ECOLI FT (P06721) (395 aa) fasta scores: E(): 5.5e-48, 36.567% id in FT 402 aa. Also similar to BP0815, 42.784% identity in 388 aa FT overlap" FT /protein_id="CAE40492.1" FT /translation="MTDESRHIDTLLQHLGTAPFDPDTGAAPVNLPSMRASTVRFRDLA FT ALEQAQRRKAGGDRAVTYGRMGMDTHAALEHVFKELEAGTHCYLASSGMGAVTMAFLSL FT LSAGEHALVADCVYGPVYELDNAVLKRMGIELTFFAPGDDLQALVRPNTRLLYVESPGS FT LLFQMLDLPALAEFARRNQLVLATDNTWGSGYIYRPLELGAQVSVIAGTKYVGGHSDLM FT LGAVVTNDEAVAQRLNRTQYAMGYSVSADDAWLALRGVRTLPIRMAQHARHAQRVCEFL FT QGRPEVARIYHPAWPQDPGHALWLRDCSGSNGMLTVELRLSQPAARVFVESLQLFDIGF FT SWGGFESLVQLVTPGELARHRYWQGGGNALVRLHIGLESPEDVIADLTQALARAASA" FT misc_feature 109302..110453 FT /note="HMMPfam hit to PF01053, Cys/Met metabolism FT PLP-dependent enzyme" FT misc_feature 109890..109934 FT /note="ScanRegExp hit to PS00868, Cys/Met metabolism FT enzymes pyridoxal-phosphate attachment site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(110553..111182) FT /transl_table=11 FT /gene="dsbA" FT /locus_tag="BP0113" FT /product="thiol:disulfide interchange protein DsbA FT precursor" FT /note="Similar to Burkholderia cepacia thiol:disulfide FT interchange protein DsbA precursor SW:DSBA_BURCE (Q9RHV8) FT (212 aa) fasta scores: E(): 1e-22, 36.620% id in 213 aa, FT and to Azotobacter vinelandii thiol:disulfide interchange FT protein DsbA precursor SW:DSBA_AZOVI (Q44504) (214 aa) FT fasta scores: E(): 2.5e-22, 37.619% id in 210 aa" FT /protein_id="CAE40493.1" FT /translation="MQSTTFTRLLAAAALGATTLFAPATQAQGAQQYVNINPPMPSDTP FT GKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIAFNAGMKPLQQLYYTLQA FT LERPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQHASQ FT LAEAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLIVQSRK" FT misc_feature complement(110562..111167) FT /note="HMMPfam hit to PF01323, DSBA oxidoreductase" FT misc_feature complement(110979..111035) FT /note="ScanRegExp hit to PS00194, Thioredoxin family active FT site." FT misc_feature complement(111102..111182) FT /note="Signal peptide predicted for BP0113 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.862 between residues 27 and 28" FT CDS complement(111244..111927) FT /transl_table=11 FT /locus_tag="BP0114" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5052 TR:Q9HUC7 (EMBL:AE004918) (231 aa) fasta FT scores: E(): 0.001, 28.807% id in 243 aa, and to Xylella FT fastidiosa hypothetical protein Xf0146 TR:Q9PH00 FT (EMBL:AE003868) (252 aa) fasta scores: E(): 6.8e-05, FT 29.167% id in 192 aa" FT /protein_id="CAE40494.1" FT /translation="MATKRKSTRRSKERGSTMYGVLAGLLIGLIVAAAVAFYVTKAPMP FT FVDRATRQPDQGKLPDPRNAPDPNQGLYGRDGAAGTPPTGPTATAPSPLPGVTPGAPSR FT QPDDLGALIATLPNLDRAPAPAATPAPAAKSAKPAAPAASATPAAPASGTYFLQAGAYR FT VLEDAEALRARIILLGLPVVMQRAEVNGVQVNRVRVGPFGRLDDMNRARSRLGENDIKS FT AVVRQ" FT misc_feature complement(111805..111927) FT /note="Signal peptide predicted for BP0114 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.460 between residues 41 and 42" FT CDS complement(111937..113724) FT /transl_table=11 FT /gene="argS" FT /locus_tag="BP0115" FT /product="arginyl-tRNA synthetase" FT /note="Similar to Xylella fastidiosa arginyl-tRNA FT synthetase Xf0147 TR:Q9PGZ9 (EMBL:AE003868) (586 aa) fasta FT scores: E(): 4e-103, 52.700% id in 537 aa, and to FT Staphylococcus aureus subspaureus N315. arginyl-tRNA FT synthetase ArgS or Sa0564 TR:Q99W05 (EMBL:AP003131) (553 FT aa) fasta scores: E(): 9.9e-65, 40.603% id in 564 aa" FT /protein_id="CAE40495.1" FT /translation="MRGHLRQTPGRPPGGSARPAARQTCRRHLPFCRLPMLLEQQKQLI FT SLIQAAVAQCLPEAQAQVQLERPKVAAHGDIATNVAMQLAKPARRNPRELAQGIVDALM FT AQPQARELIQDAEIAGPGFINFRLTPAARQAVVQAVASQADAYGRAPRNGEKVLVEFVS FT ANPTGPLHVGHARQAALGDAICRLYDASGWDVTREFYYNDAGNQIDNLAISVQARGRGI FT APDAPDYPADGYKGDYIVEIARDFAARKSVQASDGQPVTATGDLDSLDDIRAFAVAYLR FT REQDLDLQAFGLAFDNYFLESSLYASGRVQETVDTLVAKGHTYEEGGALWLRTTELGTG FT DDKDRVMRKSEGGYTYFVPDVAYHKVKWERGFHHAVNIQGSDHHGTVARVRAGLQGLAG FT IPKDFPAYVLHKMVKVMRGGEEVKISKRAGSYVTMRDLIDWVGRDAVRYFLIQRRADTE FT FVFDIDLALSKSDENPVYYIQYAHARICTMIGNSGASAAEIAQADTALLTAPSEYALLQ FT RLAEFPQVVALAAQELAPHHVAFWLRDCASDFHAWYNAERVLVDEPALKLARLRLAATT FT RQVLANGLALLGVSAPDRM" FT misc_feature complement(111940..113601) FT /note="HMMPfam hit to PF00750, tRNA synthetases class I FT (R)" FT misc_feature complement(113200..113229) FT /note="ScanRegExp hit to PS00178, Aminoacyl-transfer RNA FT synthetases class-I signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 113874..114254 FT /transl_table=11 FT /locus_tag="BP0116" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc0288 or Rs03255 SWALL:Q8Y2P7 (EMBL:AL646058) FT (105 aa) fasta scores: E(): 0.0019, 32.74% id in 113 aa" FT /protein_id="CAE40496.1" FT /translation="MYEIIRMGVRNMLITFHSKVAAEVLMRTDDAAPLLRAAGKSFRDA FT IPERGVFTADQLQSAITGLERAIAAADRSPPDDDEPHPDKEPVHPIELAVGLHQRAFPL FT LDMMRKTAAAGADLTWEVSRGW" FT CDS 114303..114662 FT /transl_table=11 FT /locus_tag="BP0117" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE40497.1" FT /translation="MRRDAPAPPPGDPSMRSEVTVVFDARRTVDLSVDVEPSVQAAAAA FT RDWFDSAWEMLGCEPLRPSGKVLLLDKILGVADALGYDTLSGDAKESREFAEQAALALG FT KARIVVDLPGLMVGH" FT repeat_region 114760..115984 FT /note="Insertion sequence" FT CDS 114945..115961 FT /transl_table=11 FT /locus_tag="BP0118" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein chnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /protein_id="CAE40498.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature 115197..115484 FT /note="HMMPfam hit to PF01548, Transposase" FT misc_feature 115497..115829 FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT CDS complement(116037..116837) FT /transl_table=11 FT /locus_tag="BP0119" FT /product="inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Thermotoga maritima sugar ABC FT transporter, permease protein Tm0598 TR:Q9WZ67 FT (EMBL:AE001734) (277 aa) fasta scores: E(): 3.9e-36, FT 43.860% id in 228 aa, and to Rhizobium meliloti putative FT sugar ABC transporter permease protein Smb20233 TR:CAC48624 FT (EMBL:AL603642) (282 aa) fasta scores: E(): 2.5e-30, FT 34.717% id in 265 aa" FT /protein_id="CAE40499.1" FT /translation="MNRTLDTLGAWLLGLLWILPLAYAAWAAFHPPAYATRFDLLAPLT FT LENFARAWNAAPFPRYFLNTFLLVTMVLAAQLVLSTLAGYAFARFEFRGRDFVFMLVLL FT QLMVMPDVLLVENYRSMSLLGVRDTVFAVGLPYFASAFGIFLLRQTFKTVPRELEEAAR FT VEGASPWQVLMKVYVPLARPIYVAYGLVSVSHHWNNFLWPLIITNSVESRPLTVGLQVF FT SSTDQGIDWSVITAATLLSAAPLLVGFLLFQRQFVQSFMRAGIR" FT misc_feature complement(join(116079..116144,116220..116285, FT 116397..116447,116493..116546,116574..116639, FT 116751..116816)) FT /note="6 probable transmembrane helices predicted for FT BP0119 by TMHMM2.0 at aa 7-29, 66-88, 97-115, 130-147, FT 184-206 and 231-253" FT misc_feature complement(116160..116390) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(116301..116387) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(116766..116837) FT /note="Signal peptide predicted for BP0119 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.983) with cleavage site FT probability 0.879 between residues 24 and 25" FT CDS complement(116834..117709) FT /transl_table=11 FT /locus_tag="BP0120" FT /product="inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Erwinia chrysanthemi inner membrane FT protein togM TR:CAC44118 (EMBL:AJ305144) (296 aa) fasta FT scores: E(): 9.7e-31, 37.091% id in 275 aa, and to FT Rhizobium loti permease protein of sugar ABC transporter FT mll1715 TR:Q98JZ2 (EMBL:AP002998) (307 aa) fasta scores: FT E(): 6.2e-41, 40.569% id in 281 aa" FT /protein_id="CAE40500.1" FT /translation="MSRTTQAVYGWLLLLPAVVLLAAFTHYPALATLWHSFFSTPKGSR FT PARFVGLENYALLRDDPVFWQSLWNNLWFALGTIPTSIAIALAMALWVNGKLHGRGFLR FT MAYFTPTVLPMVAVANIWLFFYTPQYGLIAQVMQWFGLAGPNWLGSRDTALPALMMVTV FT WKESGFFMIFYLAALQTVSPSLREAAMLEGASRWQYFRRVLWPLLMPTTLFVLVNALIN FT AFRLVDHVVVMTRGGPDNASTLLLFYIYQVGFSFWDTAYAATLTVVLLAVLAATALIKF FT RWLDRRTHYQ" FT misc_feature complement(join(116867..116932,117047..117112, FT 117176..117241,117341..117406,117428..117493, FT 117623..117688)) FT /note="6 probable transmembrane helices predicted for FT BP0120 by TMHMM2.0 at aa 7-29, 72-94, 101-123, 156-178, FT 199-221 and 259-281" FT misc_feature complement(116957..117181) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(117644..117709) FT /note="Signal peptide predicted for BP0120 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.912) with cleavage site FT probability 0.365 between residues 22 and 23" FT CDS complement(117720..119012) FT /transl_table=11 FT /locus_tag="BP0121" FT /product="probable extracellular solute-binding protein" FT /note="Similar to Escherichia coli FT glycerol-3-phosphate-binding periplasmic protein precursor FT UgpB or B3453 SW:UGPB_ECOLI (P10904) (438 aa) fasta scores: FT E(): 1.1e-30, 29.120% id in 443 aa, and to Thermotoga FT maritima glycerol-3-phosphate ABC transporter, periplasmic FT glycerol-3- phosphate-binding protein Tm1120 TR:Q9X0K4 FT (EMBL:AE001770) (436 aa) fasta scores: E(): 3.1e-35, FT 31.829% id in 421 aa" FT /protein_id="CAE40501.1" FT /translation="MRRIVLKTLAAGLAGAFLALPAQAQQPVEVEFYYPVAVGGPITKI FT VDDMVADFHKENPDIRIKPIYAGTYQDSIAKALTALKGGTPPQLAVLLSTDMFTLIDED FT AIVPVDGLAKSDADKKWLGGFYDAFMQNSRTGGHVWGVPFQRSTIVMYYNKDLFKEAGL FT DPERAPATWDELVEYGKKLTKKDANGNVSQWGIKIPSGGAFAYWLFQALTTPNDAILMN FT EEGSQVYLDKPAVVEAAQFWQDLSVKHGVMPKGTIDWGTTPKDFLEKKAAIVWTTTGNL FT TNIRKNADFPFGVAMMPKKKRGGSPTGGGNFYIFKSGTPAQQQAALKFAQWATTPERAA FT DWSIATGYVAVTPAAWQTERMKKYAQEVPAATMARDQLEVSVAEFSTHENQRVTKVLND FT ALQAALTGSKTPQQALTDAQREADRVLRSYK" FT misc_feature complement(117741..118607) FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein" FT misc_feature complement(118941..119012) FT /note="Signal peptide predicted for BP0121 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT CDS complement(119055..120095) FT /transl_table=11 FT /locus_tag="BP0122" FT /product="sugar ABC transporter, ATP-binding protein" FT /note="Similar to Thermococcus litoralis trehalose/maltose FT transport ATP-hydrolyzing subunit MalK TR:Q9V306 FT (EMBL:AF126010) (372 aa) fasta scores: E(): 7.4e-44, FT 45.205% id in 365 aa, and to Rhizobium meliloti probable FT glycerol-3-phosphate ABC transporter ATP-binding protein FT TR:CAC48805 (EMBL:AL603643) (349 aa) fasta scores: E(): FT 2.1e-49, 50.000% id in 352 aa" FT /protein_id="CAE40502.1" FT /translation="MSHLVLDDLTKQYGEAAAISGVSFTAPAGSFTVLLGPSGCGKSTT FT LRMIAGLDTPTSGRIRIGDRDVTDLPPAKRRISMVFQSYALFPHLSVRENILFGLKVRK FT EPARDYERRLARVAGLLGLQALLDRKPAQLSGGQQQRVALGRAVISEAPVCLMDEPLSN FT LDAQLRHDMRREIRALQQELGITMVYVTHDQTEAMSMADQVVLMRGGRIEQLDTPDGLY FT ARPATEFAARFIGTPPMNLIALDTHDGRPVVAGTQGPALANAPAGAVTLGLRPEHIRID FT ADGMPAVIESVEYFGADSVAVCRLGSCGGVAVRVNGHLRSAPGTAVGLAWPDERQHFFA FT ADAAVL" FT misc_feature complement(119466..120011) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(119652..119696) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT misc_feature complement(119967..119990) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(120201..121022) FT /transl_table=11 FT /locus_tag="BP0123" FT /product="putative cAMP phosphodiesterase" FT /note="Similar to Escherichia coli Icc protein or B3032 or FT Z4389 or ECS3920 SW:ICC_ECOLI (P36650) (275 aa) fasta FT scores: E(): 1.7e-14, 27.509% id in 269 aa, and to FT Rhizobium loti 3',5'-cyclic-nucleotide phosphodiesterase FT CpdA or Mll3631 TR:Q98FT1 (EMBL:AP003002) (305 aa) fasta FT scores: E(): 7.1e-25, 36.078% id in 255 aa" FT /protein_id="CAE40503.1" FT /translation="MLIAQISDLHIRMPGQKAYRVVETDRYLPPAVAALNRLEPAPDLV FT IVSGDLTDFGRPQEYAHLKQMLDALRVPYHVLPGNHDDRVQLAATFADHPYLREAGEFV FT QYTIEDQPLRFIVLDTVVPQQSHGALCERRLQWLAQRLAEQPGRPTVIVMHHPPFRTGI FT AHMDAIGLLAGAPELEALVARHSNVERIMCGHLHRTIFQRFGGTIASTCPSPAHQVALD FT LRPDGPSAFVMEPPGFHLHEWRDGALVTHHAYIESYPGPYPFHEGGELIDE" FT CDS complement(join(121045..121122,122175..123077)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0125" FT /product="probable ABC transporter, ATP-binding protein FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The IS insertion occurred near the FT C-terminal end (following codon 301). As a consequence, the FT protein is lacking 26 aa at its C-terminal end. Whether the FT protein is still functional remains to be elucidated. FT Similar to Rhizobium loti ABC transporter, ATP-binding FT protein Mlr7387 TR:Q986F1 (EMBL:AP003011) (361 aa) fasta FT scores: E(): 2e-39, 49.822% id in 281 aa, and to FT Caulobacter crescentus spermidine/putrescine ABC FT transporter, ATP-binding protein cc3134 TR:Q9A3R8 FT (EMBL:AE005977) (381 aa) fasta scores: E(): 2.4e-39, FT 53.184% id in 267 aa" FT /db_xref="PSEUDO:CAE40504.1" FT CDS complement(121123..122073) FT /transl_table=11 FT /locus_tag="BP0124" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40505.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 121123..121154 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(121123..122175) FT misc_feature complement(121159..121692) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(121750..121815) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(122144..122175) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT misc_feature complement(122433..122981) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(122619..122663) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(122937..122960) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(123074..123922) FT /transl_table=11 FT /locus_tag="BP0126" FT /product="ABC transporter, permease protein" FT /note="Similar to Rhizobium loti ABC transporter, permease FT Mlr9016 TR:Q982L0 (EMBL:AP003015) (278 aa) fasta scores: FT E(): 9.8e-17, 31.395% id in 258 aa, and to Treponema FT pallidum spermidine/putrescine ABC transporter, permease FT protein Tp0654 TR:O83660 (EMBL:AE001240) (272 aa) fasta FT scores: E(): 5.7e-13, 28.077% id in 260 aa" FT /protein_id="CAE40506.1" FT /translation="MREAGMSAMYSKTDARLGLTVTLAVAAFLIGPVVLSVLAGLTRNY FT FVGLESGLTLRWVIEVWDLYADTIWRSFAVALLTLLVCTLTGVPAAWVLTLHHGRMARA FT LEELLTLPVAVPGLASALALIVSWGTVSGLRGSIWFIVIGHVLFTLPFMVRATRASMAG FT ADLATLDEAAATLGASRLRRFLTVVVPNAAPGIVTGALTVLTLSIGEFNLTWLLHTPLT FT KTLPVGLADSYASMRLEIASAYTLVFLLMLMPLLVGLQWLAARGERNAANAPITNEKTA FT T" FT misc_feature complement(join(123137..123202,123296..123361, FT 123461..123514,123530..123595,123635..123700, FT 123806..123871)) FT /note="6 probable transmembrane helices predicted for FT BP0126 by TMHMM2.0 at aa 17-39, 74-96, 109-131, 136-154, FT 187-209 and 240-262" FT misc_feature complement(123221..123445) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS complement(join(123919..124107,124107..124742)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0127" FT /product="probable Binding-protein-dependent transport FT system, permease protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 212. The frameshift occurs within FT a homopolymeric tract of 4G. The sequenced has been checked FT and believed to be correct. Similar to Escherichia coli FT molybdenum transport system permease protein ModB or ChlJ FT or B0764 SW:MODB_ECOLI (P09834) (229 aa) fasta scores: E(): FT 6.4e-16, 34.583% id in 240 aa, and to Pyrococcus furiosus FT putative sulfate transport system permease protein FT TR:Q9HH30 (EMBL:AF307052) (322 aa) fasta scores: E(): FT 2e-14, 29.278% id in 263 aa" FT /db_xref="PSEUDO:CAE40507.1" FT misc_feature complement(join(124036..124107,124107..124253)) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT variation complement(124107..124110) FT /note="(G)4 in pertussis; (G)5 in parapertussis" FT CDS complement(124744..125754) FT /transl_table=11 FT /locus_tag="BP0128" FT /product="probable periplasmic solute-binding protein" FT /note="Similar to Campylobacter jejuni putative periplasmic FT solute-binding protein Cj0727 TR:Q9PPI0 (EMBL:AL139076) FT (348 aa) fasta scores: E(): 1.5e-26, 32.333% id in 300 aa, FT and to Rhizobium loti ABC transporter, periplasmic binding FT protein Mll3069 TR:Q98H18 (EMBL:AP003001) (368 aa) fasta FT scores: E(): 2.8e-24, 33.981% id in 309 aa" FT /protein_id="CAE40508.1" FT /translation="MKRIIQAALRGTLLALAIGAGAAQAQNAICYNCPPEWADWATQLK FT AIKEATGITVPGDNKNSGQALASIAAEKANPVADVVYYGVTFGIQADKDGLVQSYKPAH FT WDAIPDGMKDPDGKWFAIHSGTLGFMVNVDALRGKPVPKSWADLQKPEYRGMVGYLDPA FT SAFVGYVGAVALNRALGGTLDNFDPAIDWFKKMRANRPIVPKQTAYARVLSGEIPILID FT YDFNAYRAKYKDEANVDFVIPAEGTIAVPYVMSLVANAPHADNGRKVLDFTLSERGQAI FT WANAFLRPVRAEAISAEAQKKFLPASEYARAGTVDYVKMSVAQRGFSERYAKEVN" FT misc_feature complement(125680..125754) FT /note="Signal peptide predicted for BP0128 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 25 and 26" FT CDS complement(join(125751..126170,126169..126723, FT 126722..126766)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0129" FT /product="probable LacI-family transcriptional regulator FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 198. The frameshift occurs within FT a polymeric tract of 4(GC). The sequenced has been checked FT and believed to be correct. Similar to Escherichia coli FT transcriptional repressor CytR or B3934 or Z5481 or ECS4861 FT SW:CYTR_ECOLI (P06964) (341 aa) fasta scores: E(): 2.8e-23, FT 30.861% id in 337 aa, and to Streptomyces coelicolor FT probable LacI-family transcriptional regulator Scc57a.16 FT TR:Q9RDI2 (EMBL:AL136519) (347 aa) fasta scores: E(): FT 2.1e-26, 32.523% id in 329 aa." FT /db_xref="PSEUDO:CAE40509.1" FT misc_feature complement(join(125877..126170,126169..126594)) FT /note="HMMPfam hit to PF00532, Periplasmic binding proteins FT and sugar binding domain of the LacI family." FT variation complement(126169..126176) FT /note="(GC)4 in pertussis; (GC)5 in parapertussis" FT CDS 127034..128287 FT /transl_table=11 FT /locus_tag="BP0130" FT /product="amidase" FT /note="Similar to Pseudomonas putida amidase SW:AMID_PSEPU FT (O69768) (466 aa) fasta scores: E(): 6.3e-24, 35.526% id in FT 380 aa, and to Bradyrhizobium japonicum malonamidase E2 FT TR:Q9ZIV5 (EMBL:AF012735) (432 aa) fasta scores: E(): FT 2.5e-34, 39.012% id in 405 aa. Also similar to BP3713 FT (45.679% identity in 405 aa overlap)" FT /protein_id="CAE40510.1" FT /translation="MNLNRISASEAARLLNRRDLTAEQLARACLARIEQREPEVQAWTA FT LRPDAVLAAARELDRGPIRGVLHGLPLGVKDMFDTADLPTAYGSGIYQSHQPRADAAAV FT ALCRDAGALVLGKTATTEFATYHPGPTRNPRNTAYTPGGSSSGSAAAVADDMVPLALGT FT QTAGSVIRPAAYCGVVGYKPSFGRISRAGLKSLAETLDTVGMFARSVDDVALLASALMR FT DARLRELRYDGTPRVAMFRSPQWRHTLPETRPAFERAARALSQAGAVVEELAPPPNEDC FT GLAQLHSDVMAYEAAQALAFERIHYPSQLSTKLAAMLEAGAALTAEQYLAHLAQAGQAR FT AKVAEWLQRYDVLLAPSATGDPLFCRAWTLFGVPCVHLPFAQGPQGLPVGLQVVGGFRD FT DQRLLAIARWMNGVLAAD" FT misc_feature 127103..128107 FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature 127364..127387 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(128378..130078) FT /transl_table=11 FT /gene="leuA" FT /locus_tag="BP0131" FT /product="2-isopropylmalate synthase" FT /EC_number="2.3.3.13" FT /note="Similar to Rhizobium meliloti 2-isopropylmalate FT synthase LeuA SW:LEU1_RHIME (Q9X7L2) (569 aa) fasta scores: FT E(): 5e-105, 49.374% id in 559 aa, and to Pseudomonas FT aeruginosa 2-isopropylmalate synthase LeuA or PA3792 FT TR:Q9HXK5 (EMBL:AE004798) (592 aa) fasta scores: E(): FT 7.9e-135, 58.803% id in 568 aa. The N-terminal region of FT this CDS is similar to BP0287, 68.598% identity (68.598% FT ungapped) in 328 aa overlap" FT /protein_id="CAE40511.1" FT /translation="MMLANPATKYVPFQPFARDFAERTWPSRRITQPPIWMSTDLRDGN FT QSLIEPMSVERKVRFFEQLVKIGFKEIEVGFPSASQTDFDFVRKLIDEKRIPDDVTIIV FT LTQSREDLISRTVEAAAGARQAMIHLYNACAPAFRKIVFNMSRDEIKNIAVTGTRMVKQ FT YMAKYPQTQWRYEYSPEVFSTTEPEFALDVSNAVADEWDATPQRKMVLNLPATIEATSP FT NMYADQIEWMHKNLARRDSIVLSVHPHNDRGTAVAAAEFAVMAGADRIEGCLFGSGERT FT GNVDLVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGS FT HQDAIKKGFAQQQADAPWEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGL FT VLPRRLQIEFSRAIQRVTDETGREVSSDDVYTIFDSEYLAQQQPWQLVRHRIDGDPSAG FT EGKHFSIEAELSFNGERRIVKGSGDGAISAFVAALDVPVRIMDYHEHAIGTDTRAACYV FT EVRVGDSPTGFGVGIDRDIVTASFKAVLGAVNRHHVAATQATETEAVAA" FT misc_feature complement(128783..128833) FT /note="ScanRegExp hit to PS00283, Soybean trypsin inhibitor FT (Kunitz) protease inhibitors family signature." FT misc_feature complement(129089..129961) FT /note="HMMPfam hit to PF00682, HMGL-like" FT misc_feature complement(129308..129349) FT /note="ScanRegExp hit to PS00816, Alpha-isopropylmalate and FT homocitrate synthases signature 2." FT misc_feature complement(129908..129958) FT /note="ScanRegExp hit to PS00815, Alpha-isopropylmalate and FT homocitrate synthases signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(130505..131152) FT /transl_table=11 FT /locus_tag="BP0132" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE40512.1" FT /translation="MMNPTSPERIRQDGRLIGQALLKLALPRLIFRVVVVAIAAVIWLL FT VAAWLLAFGKSLSFEGMHALGQQAVDMLTRVNPYFWWGVVAIWSLIVFFSIRAWLGSSI FT AAGRAAVVPTDVLSDLAPRLSPEVLDVLRWVWGEREEPLTVGDLQRAHTELRHNHIGKI FT ALVREQSGILDAPAHRPGPDERHCAARHAEPRITEPRAVEPRLAEPHIGPAR" FT misc_feature complement(join(130850..130915,131000..131065)) FT /note="2 probable transmembrane helices predicted for FT BP0132 by TMHMM2.0 at aa 29-51 and 79-101" FT CDS 131169..132590 FT /transl_table=11 FT /gene="rpoN" FT /gene_synonym="glnF" FT /gene_synonym="ntrA" FT /locus_tag="BP0133" FT /product="RNA polymerase sigma-54 factor" FT /note="Similar to Escherichia coli RNA polymerase sigma-54 FT factor RpoN or GlnF or NtrA or B3202 SW:RP54_ECOLI (P24255) FT (477 aa) fasta scores: E(): 2.1e-63, 42.946% id in 482 aa, FT and to Alcaligenes eutrophus RNA polymerase sigma-54 factor FT TR:Q9EX69 (EMBL:AJ131690) (492 aa) fasta scores: E(): FT 9.5e-66, 49.600% id in 500 aa" FT /protein_id="CAE40513.1" FT /translation="MTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAEN FT PLLERDEDPAREEQADPEREASVEADEAPDTELRLDEMPGSGGVLPDDDSDLPQAARPD FT TLREHLLGQLALTRAAPRDAALCGLLIDELDENGYLDSPLEEILTWLPAEVQADLDELR FT AALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLA FT TGNVARVREAVQCDEAVVRAAHALIPRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQA FT VLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQAQLQQARWMIRNVEQRFDTILRVAQAI FT VAHQQAFFTQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKRFFGAG FT VSTDGGDATSATAVQAVIRQMVADEDRAKPLSDSQIMQRLADQGIVIARRTVAKYREAL FT RIAPATLRKAHAAGR" FT misc_feature 131169..132572 FT /note="HMMPfam hit to PF00309, Sigma-54 factors family" FT misc_feature 132237..132296 FT /note="ScanRegExp hit to PS00717, Sigma-54 factors family FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 132240..132305 FT /note="Predicted helix-turn-helix motif with score 1473 FT (+4.20 SD) at aa 358-379, sequence LILKDIAGELDLHESTISRATT" FT misc_feature 132510..132533 FT /note="ScanRegExp hit to PS00718, Sigma-54 factors family FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 132683..132985 FT /transl_table=11 FT /locus_tag="BP0134" FT /product="putative bacterioferritin-associated ferredoxin" FT /note="Similar to Azotobacter vinelandii FT bacterioferritin-associated ferredoxin Bfd TR:Q9Z5W9 FT (EMBL:AF121138) (73 aa) fasta scores: E(): 0.004, 40.426% FT id in 47 aa, and to Neisseria meningitidis putative FT ferredoxin Nma0965 or Nmb0752 TR:Q9JQR7 (EMBL:AL162754) (66 FT aa) fasta scores: E(): 4.5e-08, 53.704% id in 54 aa" FT /protein_id="CAE40514.1" FT /translation="MPIIVLMYICICNAVTERQVRACVDAGAATLGDLQFELGVATCCG FT CCAATATEYLPGGRASSVCEVRSVAVPVNPPAALEPVGTPQPAANGFPIPLVAVA" FT CDS complement(133013..133933) FT /transl_table=11 FT /locus_tag="BP0135" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli probable transcriptional FT regulator LrhA or GenR or B2289 SW:LRHA_ECOLI (P36771) (312 FT aa) fasta scores: E(): 5.4e-21, 33.212% id in 274 aa, and FT to Rhizobium meliloti putative LysR-family transcriptional FT regulator Sma1979 TR:AAK65745 (EMBL:AE007294) (290 aa) FT fasta scores: E(): 6.7e-40, 49.810% id in 263 aa" FT /protein_id="CAE40515.1" FT /translation="MTNSLFGSKVFEKPMHFPERTAVDLDLLHSFVSVVDAGGFTRAGE FT RVHRTQSTVSQQIRKLEDALGCALFIREGRGVRLTEDGERLLGYARRMLALSNEIREVV FT SGERRLEVVRLGLPDDLAVTRLTHMVADFARRHPQVRLSMRCDLSANLHRAQARGELDL FT VLLKREPGAGPSRAAWPERLHWLCAAGGPATLPDPIALVAFPQGCQYRNRAIHALESAG FT RRWRIAYESPNLSGLQAAVEGGLGVALLEQRCQTPAMARCDALLPRPAPSELALCMSDT FT GSRAVHELARLIMDFCGDDKLRQAA" FT misc_feature complement(133241..133294) FT /note="ScanRegExp hit to PS00216, Sugar transport proteins FT signature 1." FT misc_feature complement(133439..133861) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(133727..133819) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(133757..133822) FT /note="Predicted helix-turn-helix motif with score 1647 FT (+4.80 SD) at aa 38-59, sequence GGFTRAGERVHRTQSTVSQQIR" FT CDS join(134083..134547,134547..134927) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0136" FT /product="putative integral membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 155. The sequenced has been FT checked and believed to be correct. Similar to Pseudomonas FT aeruginosa hypothetical protein Pa3358 TR:Q9HYN8 FT (EMBL:AE004758) (292 aa) fasta scores: E(): 1e-19, 34.164% FT id in 281 aa, and to Agrobacterium tumefaciens Agr_c_4246p FT TR:AAK88080 (EMBL:AE008149) (354 aa) fasta scores: E(): FT 8.2e-19, 29.965% id in 287 aa" FT /db_xref="PSEUDO:CAE40516.1" FT misc_feature 134092..134466 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature join(134527..134547,134547..134906) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT variation 134547..134548 FT /note="GT in pertussis; G(C)T in parapertussis" FT CDS complement(135158..136108) FT /transl_table=11 FT /locus_tag="BP0137" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40517.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 135158..135189 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(135158..136210) FT misc_feature complement(135194..135727) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(135785..135850) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS 136210..136479 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0138" FT /product="C-terminal region of an outer membrane porin FT (Pseudogene)" FT /note="Pseudogene. This CDS is the C-terminal region of FT BP0267 which was disrupted by the insertion of IS481 FT element. Similar to C-terminal region of the previously FT sequenced Bordetella pertussis outer membrane porin protein FT precursor SW:OMP_BORPE (Q04064) (385 aa) fasta scores: E(): FT 2e-21, 66.667% id in 90 aa, and to Bordetella pertussis FT OmpQ TR:Q45342 (EMBL:U16266) (364 aa) fasta scores: E(): FT 0.014, 32.292% id in 96 aa. Also similar to N-terminus of FT BP2851 (65.909% identity in 88 aa overlap), and BP0840 FT (66.667% identity in 90 aa overlap)." FT misc_feature 136348..136476 FT /note="HMMPfam hit to PF00267, Gram-negative porin" FT CDS complement(136527..138035) FT /transl_table=11 FT /gene="ilvA" FT /locus_tag="BP0139" FT /product="threonine dehydratase biosynthetic" FT /EC_number="4.3.1.19" FT /note="Similar to Escherichia coli threonine dehydratase FT biosynthetic IlvA or B3772 SW:THD1_ECOLI (P04968) (514 aa) FT fasta scores: E(): 8.9e-98, 52.200% id in 500 aa, and to FT Burkholderia cepacia threonine dehydratase biosynthetic FT IlvA SW:THD1_BURCE (P53607) (507 aa) fasta scores: E(): FT 6.2e-134, 69.444% id in 504 aa" FT /protein_id="CAE40519.1" FT /translation="MSTDYLKRILTSKVYDVAVESPLERAPLLSQRIANNVLLKREDTQ FT AVFSFKLRGAYNKMANLTPAARSRGVIAASAGNHAQGVALAATRLGCRAVIVMPTTSPQ FT VKVDAVRRLGGEVVLAGDSFTDAYEHAQQLEKREKLTFVHPFDDPDVIAGQGTIGMEIL FT RQHPGEIEAIFVAIGGGGLIAGVAAYIKQLRPEIKIIGVQTEDSDAMVRSVRAGRRVQL FT SDVGLFSDGTAVKLVGAETFRLARQYVDDFVVVNTDAICAAIKDVFQDTRSVLEPAGAM FT AVAGAKQYAAEHKLKGKTLVAVACGANMNFDRLRFVAERAEVGEMREAVFAVTMPEQRG FT SFRRFCELVGNRSVTEFNYRISDAERAHVFVGVQVSTPAEPEKIAANFRRHGFDTLDLT FT HDELAKTHLRHMVGGHSALARNELLYRFEFPERPGALMRFLNAMNPDWNISLFHYRNQG FT ADYGNILIGIQVPPTDKKLFKTFVAELGYPHWNETDNPAYRLFL" FT misc_feature complement(136530..136799) FT /note="HMMPfam hit to PF00585, C-terminal domain of FT Threonine dehydratase" FT misc_feature complement(136812..137081) FT /note="HMMPfam hit to PF00585, C-terminal domain of FT Threonine dehydratase" FT misc_feature complement(137115..137996) FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme" FT misc_feature complement(137361..137408) FT /note="ScanRegExp hit to PS00063, Aldo/keto reductase FT family putative active site signature." FT misc_feature complement(137871..137912) FT /note="ScanRegExp hit to PS00165, Serine/threonine FT dehydratases pyridoxal-phosphate attachment site. Confirmed FT by InterPro eMOTIF pattern match." FT CDS join(138122..138409,138413..138658) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0140" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Pseudogene. This CDS appears to have an in-frame TAG FT stop codon. The sequence has been checked and believed to FT be correct. Similar to Escherichia coli hypothetical 15.6 FT kDa protein in gshA-csrA intergenic region YqaA or B2689 FT SW:YQAA_ECOLI (P76631) (142 aa) fasta scores: E(): 3.5e-09, FT 35.256% id in 156 aa, and to Vibrio cholerae hypothetical FT protein Vc0553 TR:Q9KUG8 (EMBL:AE004141) (153 aa) fasta FT scores: E(): 9.2e-09, 44.578% id in 166 aa" FT /db_xref="PSEUDO:CAE40520.1" FT variation 138410..138412 FT /note="TAG stop in pertussis; CAG in parapertussis" FT CDS 138845..142744 FT /transl_table=11 FT /locus_tag="BP0141" FT /product="probable iron-sulfur binding oxidase" FT /note="Similar to Neisseria meningitidis oxidoreductase, FT putative nmb0998 TR:Q9JZL6 (EMBL:AE002451) (1277 aa) fasta FT scores: E(): 3e-169, 61.515% id in 1307 aa" FT /protein_id="CAE40521.1" FT /translation="MREIPYNYTSFSDREIVSRLLGEDAWQLVSDLRGERRTGRSARML FT YEVLGDIWVVRRNPYLQDDLLDNPKRRKLLIEALHHRLGEIDKRREPAAVTEAGHDPRR FT DAKVVELLARARSAVAAFEGQFDQTAQLRRQAQRVLGRITARDNIKFDGLSRVSHVTDA FT TDWRVEYPFVVLTPDAEDEIAALVRACIELGLTIVPRGGGTGYTGGAIPLTWKSAVINT FT EKFEALGEVESCVLPGMTEPAAVIRAGAGVVTKRVAEAAERAGFVFAVDPTSAEASCVG FT GNIAMNAGGKKAVLWGTALDNLAWWRMVDPDGNWLEVTRLAHNLGKIHDVDVASFELKW FT FDGAGKPGEKLLRTERLDIEGRKFRKAGLGKDVTDKFLAGLPGVQKEGCDGLITSARWV FT LHRMPRHTRTVCMEFFGQARDAIPSIVEVKGYLDGEGKARGAILAGLEHLDERYLRAVG FT YATKSKRGMLPKMVLIGDIVGDDEDAVATAASEVVRLANTRHGEGFVAVSAEARKKFWL FT DRSRTAAIARHTNAFKINEDVVIPLDRMGEYTDHIERINIELSTRNKLRLLDELDAYLA FT EPLPMGKVEDAEDVALTRAEVLAERTRQAIEHLARTRRRWQWLLDNLDLPLAQALPELD FT GLDMAAQREALAERVQAQPQARVFDVVQDHTVRISWKTEVLPALQGVFSGNAGKLILEG FT LVAVHARVLKSRVFVALHMHAGDGNVHTNIPVNSDDYGMLREANQAVERIMQIARDLDG FT VISGEHGIGLTKYEFLTEAELAPFQEYKRRVDPNGHFNAGKLMPGADLRHAWTPSFNLM FT GHESLIMQQSDIGAIADSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILATSLLVEAF FT LYEEQTRRGISLKHWEEFEDVADHCTVCHKCYTPCPVDIDFGDVSMNMRALLRRMGRKS FT FNPGTAAAMFFLNAKDPAAINATRKAMVGVGYKVQRAAHDLLASVSRKQAAHPPATVGR FT APLREQVVHFVNRKMPGGLPKQTARKLLDIEDANYVPIIRDPKTTTADTEAVFYFPGCG FT SERLFSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRGNGMTDKAEQIITDNRVLFHRV FT SNTLNYLDIKTVVVSCGTCYDQLAGYEFEKIFPGCRLIDIHEYLLEKGIKLDGVQGVRY FT MYHDPCHTPMKLQDPMKTVRSLVGEGAQKSDRCCGESGTLAVSRPDVSTQVRFRKQEEL FT DQGQAAMRADGFSGDVKVLTSCPSCLQGLSRYEGETGMDADYIVVEMARHILGETWMED FT YVRRANTGGIEHVLV" FT misc_feature 138845..138856 FT /note="ScanRegExp hit to PS00228, Tubulin-beta mRNA FT autoregulation signal." FT misc_feature 139256..140029 FT /note="HMMPfam hit to PF01565, FAD binding domain" FT misc_feature 141323..141394 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature 141530..141547 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature 141530..141565 FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 142797..143579 FT /transl_table=11 FT /locus_tag="BP0142" FT /product="GntR family transcriptional regulator" FT /note="Similar to Deinococcus radiodurans transcriptional FT regulator, GntR family Dr0815 TR:Q9RW54 (EMBL:AE001936) FT (267 aa) fasta scores: E(): 1.7e-09, 30.041% id in 243 aa, FT and to Bacillus subtilis hypothetical transcriptional FT regulator YdhC SW:YDHC_BACSU (O05494) (224 aa) fasta FT scores: E(): 3e-10, 29.469% id in 207 aa" FT /protein_id="CAE40522.1" FT /translation="MRYLCFNVYLVLSYICKLRRPAAKEFILDVKAPATIPYFLKEQIR FT ELIVDGTFRPGQPLREQDLEQRFGTSRSPIREALRLLERGGLVVHLQRKGFRIRRYSQT FT EIRQVYMLYAELEAYSIMQLSEAADSPLLDDLRRHEARIAQAQADADVRGYIGALRDFY FT LASARFTGNVPLADTLSRLYEQVEPLRYNLVRRTLAATPADQYHRGIVPALAQRDLAGA FT ARQAHVLVREMLPRILSAYEQWAGDAGDEPGDDRLRVA" FT misc_feature 142914..143090 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature 142968..143042 FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature." FT misc_feature 142971..143036 FT /note="Predicted helix-turn-helix motif with score 1190 FT (+3.24 SD) at aa 59-80, sequence LREQDLEQRFGTSRSPIREALR" FT CDS complement(143667..144890) FT /transl_table=11 FT /locus_tag="BP0143" FT /product="conserved hypothetical protein" FT /note="Identical to the N-terminal region of Bordetella FT pertussis hypothetical 29.3 kDa protein TR:O30450 FT (EMBL:AF006000) (273 aa) fasta scores: E(): 9.8e-105, FT 100.000% id in 273 aa, and similar to Pseudomonas FT aeruginosa hypothetical protein PA0446 TR:Q9I672 FT (EMBL:AE004482) (407 aa) fasta scores: E(): 2.7e-92, FT 57.248% id in 407 aa. Also similar to BP1779 (68.059% FT identity in 407 aa overlap), and BP3309 (57.143% identity FT in 399 aa overlap)." FT /protein_id="CAE40523.1" FT /translation="MKQALEHIKVVDLTRVLAGPWATQILADMGARVIKIERPGAGDDL FT RGWGPPFLKNAHGEETTDAAYFLSTNRGKESVTLDISSAEGQEIVRQLAKDADVLVENY FT KVGTLARFGLDYESLRKINPRLVYCSVTGFGQTGPHAHLPGYDYIFQGMGGLMSITGLP FT DAEPGGGPLKTGIPITDVVTGIYASTAILGALEHRNLSGEGQAIDISLLDCLVNVTGCA FT VMNYFLSGRIPQRLGNTHSNMVPYQVFRCKEGDVIVAVGNDTQFVTFAGLIGMPQLATD FT SRFSTMAQRSRNRETLIPIIAQAMQARTMQEWVSLLEAANVPCGPINNLQQVFEDPQVQ FT HRGLKLSLPHGSGVDAPGVASPIRYSATPIAYGRAAPCLGEHTDDVLQSELGMAPAAIG FT ALRARGIV" FT misc_feature complement(144081..144662) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS complement(144874..145806) FT /transl_table=11 FT /locus_tag="BP0144" FT /product="putative lipase" FT /note="This CDS start with an isoleucine, whereas FT parapertussis and bronchiseptica start with a methionine. FT The sequence has been checked and believed to be correct. FT Identical to the previously sequenced Bordetella pertussis FT hypothetical 34.3 kDa protein TR:O30449 (EMBL:AF006000) FT (324 aa) fasta scores: E(): 2.8e-116, 100.000% id in 303 FT aa, and to Acinetobacter spSE19. acetyl-hydrolase chnC FT TR:Q9F7D7 (EMBL:AF282240) (300 aa) fasta scores: E(): FT 1.8e-28, 34.507% id in 284 aa. Also similar to BP2097, FT 39.583% identity in 288 aa overlap" FT /protein_id="CAE40524.1" FT /translation="MASAQLATLSAQVRQLYAGWDPNTDIARIRRDWDAFFGAVRLPAR FT VTPVDAGGVPCHWIEAPASTRDRVVVFIHGGGYQIGSHRSHHNLMARLSAWSGRAVLSI FT GYRLAPQARCPAALEDVDAAHAWLAGQGWSARQTALCGDSAGGALAVLLLARLRARGAA FT LPAACAVMSPWIDLQARGESYTANAASDPIANRATVLRMARAYLGRDGDPEAPAVSAQH FT ADLRGLPPLLVQAGSAEALLDDARALAARAAASGVAVRLSVWQDMPHVFQLFAARLDAA FT DAAIAELADFINHPLRAPTGAEPRHETST" FT misc_feature complement(145549..145599) FT /note="ScanRegExp hit to PS01173, Lipolytic enzymes FT 'G-D-X-G' family, putative histidine active site. Confirmed FT by InterPro eMOTIF pattern match." FT variation complement(145804..145806) FT /note="AT(A) (isoleucine) in pertussis; AT(G) (a methionine FT start codon)in parapertussis and bronchiseptica" FT CDS complement(145812..146624) FT /transl_table=11 FT /locus_tag="BP0145" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 29.5 kDa protein TR:O30448 FT (EMBL:AF006000) (270 aa) fasta scores: E(): 3e-109, FT 100.000% id in 270 aa, and similar to Escherichia coli FT naphthoate synthase MenB or B2262 SW:MENB_ECOLI (P27290) FT (285 aa) fasta scores: E(): 3.5e-20, 33.969% id in 262 aa" FT /protein_id="CAE40525.1" FT /translation="MNKSDSFELIEYQAADGIARIAHNRPQARNAESQGLLEELDQALG FT LAVRDASVKAIVISGKGDHFSAGHDLKEAAAKRSNFTVEQRWEFEQRYYLGYAMHIYDC FT PKPTIAQVSGACIAGGFMVANMCDLIVASDDAFFSDPVCQTLATAAVEVMIHPWVMGAR FT KAKEFLFLGERMSAREALAIGMVNKVVARAELQAETERMAQRIAACDPFALRLVKRSIN FT RGLEMQGLRSAIDAHFDTHQLSHLSEGFNRARAQGLGNAIQAAAAGSR" FT misc_feature complement(146052..146570) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS complement(join(146645..147106,147110..147865)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0146" FT /product="putative hydroxylase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have an in-frame FT stop codon. The sequence has been checked and believed to FT be correct. Identical to the previously sequenced FT Bordetella pertussis hypothetical 45.1 kDa protein FT TR:O30447 (EMBL:AF006000) (406 aa) fasta scores: E(): FT 1.4e-164, 99.754% id in 406 aa, and similar to Streptomyces FT coelicolor putative salicylate hydroxylase Sce29.14C FT TR:Q9Z4Y6 (EMBL:AL035707) (420 aa) fasta scores: E(): FT 2.6e-41, 39.692% id in 325 aa" FT /db_xref="PSEUDO:CAE40526.1" FT variation complement(147107..147109) FT /note="In-frame TAG stop codon in pertussis; CAG in FT parapertussis and bronchiseptica" FT misc_feature complement(147812..147865) FT /note="Signal peptide predicted for BP0147 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.926) with cleavage site FT probability 0.464 between residues 18 and 19" FT CDS complement(147937..148908) FT /transl_table=11 FT /locus_tag="BP0148" FT /product="putative exported protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 34.9 kDa protein in brg1 3'region FT precursor SW:YBR5_BORPE (O30446) (323 aa) fasta scores: FT E(): 6.7e-122, 100.000% id in 323 aa, and similar to FT Comamonas testosteroni OrfJ protein TR:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 8.9e-35, FT 35.220% id in 318 aa" FT /protein_id="CAE40527.1" FT /translation="MKPFSLLRRIATIALLMAASSAHADTFPSRPIRLIVPFGPGGITD FT LIARQAALGMAEKLGQPVIIENKPSAGHIVAMQTVAQATPDGYTILLGSNTGFTVAPHM FT YKNLPFRIDTLQPIAPINTAPTVLLARPDFPANNLTELIQYIKDNPGKLNYGSFGIGTS FT AHLGMEIMKSDLGLNIMHIPYRGDAQGLLALKAKEVDIAYITLFSAQARIRAGEFKALG FT VLQNDRLTAFPDIQTTVEVGSKNSGMPVWIAFFAPPGTPDAVMRKLESATRSASTAPAF FT VEFLHNNGVEPWNPSNQDLMRFIQDQLNRSGPIIQEIGLQPQ" FT misc_feature complement(148837..148908) FT /note="Signal peptide predicted for BP0148 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT CDS 149027..149809 FT /transl_table=11 FT /locus_tag="BP0149" FT /product="probable transcriptional regulator" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 29.0 kDa protein TR:O30445 FT (EMBL:AF006000) (260 aa) fasta scores: E(): 2.1e-107, FT 100.000% id in 260 aa, and similar to Pseudomonas FT aeruginosa probable transcriptional regulator pa1630 FT TR:Q9I392 (EMBL:AE004590) (288 aa) fasta scores: E(): FT 3e-31, 40.329% id in 243 aa" FT /protein_id="CAE40528.1" FT /translation="MSAPKASRPARDRQFASTLAHGLQLLRCFTPEAAVLSNRQLSELS FT GLSKPTVSRYTYTLIELGYLKVDPVSGKFQLGNAVLTLSYPLLANIALRQVVRSPMREL FT AERLGCSVSLCMRERLSMVYVETSRSRSLRAQRYSDIGMSHPIIATSNGRAYLAACSAD FT ERNTLFNQIRVKTPEHWERWGESALDMIQFWGRHGFCYSHGEYRPDVATVGVPYRPSSG FT GELYVFNCVLGSQFVKPGQLENEVGPALLEMTSVLPYA" FT misc_feature 149132..149197 FT /note="Predicted helix-turn-helix motif with score 1696 FT (+4.96 SD) at aa 36-57, sequence LSNRQLSELSGLSKPTVSRYTY" FT misc_feature 149246..149806 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS complement(join(149820..149906,149908..150579)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0150" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 224. The frameshift occurs within FT a homopolymeric tract of (C)3. The sequence has been FT checked and believed to be correct. Identical to the FT previously sequenced Bordetella pertussis hypothetical 26.3 FT kDa protein TR:O30444 (EMBL:AF006000) (252 aa) fasta FT scores: E(): 4.5e-92, 100.000% id in 252 aa, and similar to FT Staphylococcus aureus subspaureus Mu50. conserved FT hypothetical protein Sav1605 TR:BAB57767 (EMBL:AP003362) FT (250 aa) fasta scores: E(): 8.6e-46, 52.227% id in 247 aa" FT /db_xref="PSEUDO:CAE40529.1" FT variation complement(149906..149908) FT /note="(C)3 in pertussis; (C)2 in parapertussis" FT CDS complement(150576..151556) FT /transl_table=11 FT /locus_tag="BP0151" FT /product="conserved hypothetical protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 59.5 kDa protein TR:O30443 FT (EMBL:AF006000) (568 aa) fasta scores: E(): 2.8e-122, FT 100.000% id in 326 aa, and similar to Bacillus halodurans FT Bh1818 protein TR:Q9KBV6 (EMBL:AP001513) (331 aa) fasta FT scores: E(): 2.6e-41, 43.344% id in 323 aa" FT /protein_id="CAE40530.1" FT /translation="MSLAVIKPGMLSTFQDGGRHGYQHQGIPVAGAMDPRAHRLANLLA FT GNAADTATLEITVAGPTLRFEAPACVALGGADLGATLGGLPAPVLRPLVARAGDVLSFA FT RPGQGARAYLAVHGGYDLPMVMGNQSTYLRSAFGGYHGRALAKGDQVGLRRPLADDAAR FT LDALAQQLWQLRFYLAATLSSPPRDVLRILPGPHWAAFDAASRQALLDQAFRIGAQSDR FT MGYRLEGPRLRLSEPREMLSEATCFGTVQVPADGAPIVLMADRQTTGGYPKLAQAMPGQ FT ALRFALIELAQAQRLDAAREAAFAQLTGQLDALRGLLRDFQEPTP" FT misc_feature complement(150648..151487) FT /note="HMMPfam hit to PF02626, Uncharacterized ACR, FT COG1984" FT CDS complement(151553..152281) FT /transl_table=11 FT /locus_tag="BP0152" FT /product="conserved hypothetical protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 59.5 kDa protein TR:O30443 FT (EMBL:AF006000) (568 aa) fasta scores: E(): 3.9e-82, FT 99.103% id in 223 aa, and similar to Bacillus halodurans FT Bh1817 protein TR:Q9KBV7 (EMBL:AP001513) (225 aa) fasta FT scores: E(): 2.6e-26, 44.144% id in 222 aa" FT /protein_id="CAE40531.1" FT /translation="MTASPSPPSSAPAGWRILPQGDRCLIVWFGAQIDAGVGRACLAAA FT GLLRAAGLAGVTDVVPSFAAVAVHYRPGPDGAPDYATLAAQVERLLAGGIPVDDSAGRE FT MEIPVCYGGEHGPDLEEAARAAGLTPEALVALHGAPGSMVYMLGFAPGHSYIGVHDARL FT DLPRRATPRTAVPAGSVAIANRQTVIYPARLPGGWNIIGATPLNLFDPGREPAALLQPG FT DRIRFVPIDAAEFDRLREAQ" FT misc_feature complement(151625..152239) FT /note="HMMPfam hit to PF02682, Uncharacterized ACR, FT COG2049" FT CDS complement(152306..152737) FT /transl_table=11 FT /locus_tag="BP0153" FT /product="probable dioxygenase" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 15.6 kDa protein TR:O30442 FT (EMBL:AF006000) (143 aa) fasta scores: E(): 6.4e-60, FT 100.000% id in 143 aa, and similar to Pseudomonas FT aeruginosa probable ring-cleaving dioxygenase Pa0817 FT TR:Q9I5C2 (EMBL:AE004517) (141 aa) fasta scores: E(): FT 6.1e-33, 60.584% id in 137 aa" FT /protein_id="CAE40532.1" FT /translation="MSTPSPIPPFHLAFPVRDLAEARDFYGALLGCPEGRSSPEWIDFN FT FYGHQIVAHLAPQACGSAATNAVDAHNVPVRHFGAVLSMDQWEALAGKLTDAGTEFVIE FT PYIRFKGEVGEQATMFFLDPSGNALEFKAFKNIESLFAK" FT misc_feature complement(152336..152695) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS 152839..153714 FT /transl_table=11 FT /gene="brg1" FT /locus_tag="BP0154" FT /product="LysR family transcriptional regulator" FT /note="Identical to the previously sequenced Bordetella FT pertussis Brg1 TR:O30441 (EMBL:AF006000) (291 aa) fasta FT scores: E(): 6.6e-108, 99.656% id in 291 aa, and similar to FT Pseudomonas aeruginosa probable transcriptional regulator FT pa0816 TR:Q9I5C3 (EMBL:AE004516) (294 aa) fasta scores: FT E(): 1.9e-38, 46.259% id in 294 aa" FT /protein_id="CAE40533.1" FT /translation="MIREFKTFIAVARGGTFTGAGRRLGLTQSAVSAQIKRLEEHLGVA FT LFERTGKSAALNHHGRSLLPQAEVLVAMADRVVGMAGAGRISGLLRVGAIASVQQDLLV FT RALAALRAEHPDVRVRIVPGVSLTLLGHVDAGEVDLAVLIRPPFALPPELEWQPLLHEP FT MVLAVPEAAPEGPWRELLAGQPFIRYDRASFGGRLVDMFLKRHRLDVREAIELDEIDAI FT ANLVRHGLGVALLPHTRHLDARGLRLLELDDQVRFAREIGLIVRQPLGQSPLAQRLAQC FT LRAAVSFGEA" FT misc_feature 152842..153264 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 152881..152946 FT /note="Predicted helix-turn-helix motif with score 1732 FT (+5.09 SD) at aa 15-36, sequence GTFTGAGRRLGLTQSAVSAQIK" FT misc_feature 152884..152976 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(153767..154987) FT /transl_table=11 FT /gene="serA" FT /locus_tag="BP0155" FT /product="D-3-phosphoglycerate dehydrogenase" FT /EC_number="1.1.1.95" FT /note="Identical to the previously sequenced Bordetella FT pertussis D-3-phosphoglycerate dehydrogenase homolog SerA FT TR:O30440 (EMBL:AF006000) (399 aa) fasta scores: E(): FT 4.9e-146, 99.749% id in 399 aa, and similar to Escherichia FT coli D-3-phosphoglycerate dehydrogenase SerA or B2913 FT SW:SERA_ECOLI (P08328) (409 aa) fasta scores: E(): 1.6e-81, FT 56.500% id in 400 aa" FT /protein_id="CAE40534.1" FT /translation="MLYRQPNMAQIVLFENIHPSARAVFSAAGYTDIVAHAAALPSGEL FT REALRGAEVVGIRSRTHLDADLLAANPDLRVVGCFCIGTNQVDLDAAMMRGVPVFNAPF FT SNTRSVAELVLGEAILLLRRIPEKNARVHLGHWDKSAAGAYEARGKTLGIVGYGNIGSQ FT ISTLAEAIGMRVVFFDVEAKLPLGNARAAGSLAELLEQADVVTLHVPGGKSTQNIVNAD FT TLARMKRGAILINASRGTVVDIQALHDALASGHLAGAALDVFPTEPKSADEPLASPLIG FT MPNVVLTPHIGGSTQESQENIGREVAEKLVRFLQAGTTKSAVNFPELSYQAPVGGSRII FT HVHRNAPGALGALDNLMAQHGLNIVSQSLQTKGQIGYAVTDVDGEVSDTVLADLRSHPV FT TVRCEKL" FT misc_feature complement(153770..153979) FT /note="HMMPfam hit to PF01842, ACT domain" FT misc_feature complement(154118..154741) FT /note="HMMPfam hit to PF00389, D-isomer specific FT 2-hydroxyacid dehydrogenase, catalytic domain" FT misc_feature complement(154259..154309) FT /note="ScanRegExp hit to PS00671, D-isomer specific FT 2-hydroxyacid dehydrogenases signature 3. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(154328..154396) FT /note="ScanRegExp hit to PS00670, D-isomer specific FT 2-hydroxyacid dehydrogenases signature 2. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(154451..154534) FT /note="ScanRegExp hit to PS00065, D-isomer specific FT 2-hydroxyacid dehydrogenases NAD-binding signature. FT Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(154535..154558) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(155071..155532) FT /transl_table=11 FT /locus_tag="BP0156" FT /product="putative exported protein" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm1939 TR:Q9CJQ5 (EMBL:AE006230) (151 aa) fasta FT scores: E(): 1.5e-25, 51.370% id in 146 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa4714 FT TR:Q9HV84 (EMBL:AE004885) (149 aa) fasta scores: E(): FT 8.1e-21, 46.853% id in 143 aa" FT /protein_id="CAE40535.1" FT /translation="MSHVSTLRRALLGALLLAPAAALANTPIPIDVWRTPTCGCCEDWL FT QHLRSNGFEVRAHMVEDTAPVRSQAGMPARYGSCHTARVQGYTVEGHVPAADIRRLLRD FT KPRAVGLTAPGMPIGSPGMDGPAYGGRRDAYDVLLVQPDGSVRVFQAYR" FT misc_feature complement(155461..155532) FT /note="Signal peptide predicted for BP0156 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 24 and 25" FT CDS complement(155638..157035) FT /transl_table=11 FT /locus_tag="BP0157" FT /product="two-component sensor kinase" FT /note="Similar to Escherichia coli sensor kinase CusS or FT B0570 SW:CUSS_ECOLI (P77485) (480 aa) fasta scores: E(): FT 3e-34, 33.124% id in 477 aa, and to Pseudomonas aeruginosa FT probable two-component sensor pa1438 TR:Q9I3Q9 FT (EMBL:AE004573) (481 aa) fasta scores: E(): 1e-37, 35.177% FT id in 452 aa" FT /protein_id="CAE40536.1" FT /translation="MRLRTPSMQRRLTLWLGVIALLASSLAGALLFWTLKQEVQRQEIT FT EARGKAELIEHLVGMQSHTSRALSDMLDGIQAGHGHLGIWITSPDGTLRYGNATPEVLS FT VTDDDEVLLRNADDTRMRGVRLTLPGPPEAGATLTVAVNTLANARFLYAYGTALLLICA FT LWIGATVVLAAWAVRRTLAPVRRLSGQAASIQPEHLDVRLPVVGIDRELSDLVASFNRT FT LDRLQEAYQKMEGFNADVAHELRTPLATLINGAQVTLSSPRSAEELREALTSNLEELED FT LKTLVNDMLFLARADRGEQAADLAPARLEQEALRVAEYFEATLEAQALHVAVQGSATCA FT ANPGLVRRALANLLANAIRATPRGATITVRCAALPDGAARLTVHNPGPPIPAADLPRIF FT DRFFRSGGARPPRGEGHGLGLAIVRAIARMHNGGVTAASGPAGTEIGFSLGARPAQDDK FT RVIRATD" FT misc_feature complement(155677..156015) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature complement(156142..156342) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT misc_feature complement(156352..156564) FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature complement(join(156505..156570,156934..156999)) FT /note="2 probable transmembrane helices predicted for FT BP0157 by TMHMM2.0 at aa 12-34 and 155-177" FT misc_feature complement(156949..157035) FT /note="Signal peptide predicted for BP0157 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.685 between residues 29 and 30" FT CDS complement(157032..157709) FT /transl_table=11 FT /locus_tag="BP0158" FT /product="two-component response regulator" FT /note="Similar to Escherichia coli transcriptional FT regulatory protein PcoR SW:PCOR_ECOLI (Q47456) (226 aa) FT fasta scores: E(): 4.7e-46, 53.846% id in 221 aa, and to FT Pseudomonas aeruginosa probable two-component response FT regulator Pa1437 TR:Q9I3R0 (EMBL:AE004573) (229 aa) fasta FT scores: E(): 9.4e-56, 63.393% id in 224 aa" FT /protein_id="CAE40537.1" FT /translation="MCILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDY FT ELVILDVMLPDIDGFAVLAALRAAARNTPVLMLTARDRVEDRVRGLEGGADDYLVKPFA FT FSELLARVHALQRRGRSQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLALLLR FT RQGQILSRTTLAEQVWDMNFDSDTNVIDVAIRRLRGKLDDPYDAKLLHTVRGMGYVLES FT RPS" FT misc_feature complement(157059..157274) FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT misc_feature complement(157374..157709) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS complement(157765..159075) FT /transl_table=11 FT /gene="phoR" FT /gene_synonym="nmpB" FT /locus_tag="BP0159" FT /product="phosphate regulon sensor protein" FT /note="Similar to Escherichia coli phosphate regulon sensor FT protein PhoR or NmpB or B0400 SW:PHOR_ECOLI (P08400) (431 FT aa) fasta scores: E(): 1e-55, 41.458% id in 439 aa, and to FT Klebsiella pneumoniae phosphate regulon sensor protein PhoR FT SW:PHOR_KLEPN (P45608) (431 aa) fasta scores: E(): 3.2e-55, FT 40.961% id in 437 aa" FT /protein_id="CAE40538.1" FT /translation="MIWLRTLFMIAFWAVMALLAQWLIGDPAGWLLFGAATAAMLLWRS FT WRLHLVSRWAHDPESAPPAAVGPWDDILAPLYRYTRARARELAETRETMQSMLAAAQAL FT PDGVVTLNEDFQIDWANRMARRHLGLRLPADRGHNLLNLLRAPEFVAYAHRGHWPEPIL FT VRLSLNGQERVMMIHLAGYASNQRLLISRDVTQIERLETTRRDFVANVSHELRTPLTVL FT AGFLETLRELPAEALPAEQRDQYMAMMHEQARRMQAIVEDLLTLSTLESSPEADPLAVD FT VGALLRTARQQVEALSNGRHVFEWQIEEGLDVLGSGTELASALSNLLTNAVRYTPDGGR FT IIVRWRRGADGEALYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAAGGTGLGLAITKH FT IAMRHDADLLIDSELGKGSTFTLRFPAERVTGEDPDR" FT misc_feature complement(157792..158133) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature complement(158260..158469) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT misc_feature complement(159004..159069) FT /note="1 probable transmembrane helix predicted for BP0159 FT by TMHMM2.0 at aa 2-24" FT misc_feature complement(159016..159075) FT /note="Signal peptide predicted for BP0159 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.993) with cleavage site FT probability 0.600 between residues 20 and 21" FT CDS complement(159087..159785) FT /transl_table=11 FT /gene="phoB" FT /locus_tag="BP0160" FT /product="phosphate regulon transcriptional regulatory FT protein" FT /note="Similar to Escherichia coli phosphate regulon FT transcriptional regulatory protein PhoB or B0399 or Z0497 FT or ECS0449 SW:PHOB_ECOLI (P08402) (229 aa) fasta scores: FT E(): 2.6e-52, 59.211% id in 228 aa, and to Vibrio cholerae FT DNA-binding response regulator PhoB or VC0719 TR:Q9KU11 FT (EMBL:AE004158) (229 aa) fasta scores: E(): 1.3e-54, FT 60.526% id in 228 aa" FT /protein_id="CAE40539.1" FT /translation="MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAE FT LPDLILLDWMLPGASGLSLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYIT FT KPFSPKELMARIKAVLRRRAPQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEFRLL FT HFFMTHPERVFSRSQLLDQVWGDHVFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSG FT YRFTAQVPAR" FT misc_feature complement(159120..159335) FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT misc_feature complement(159438..159779) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS 159949..160725 FT /transl_table=11 FT /gene="ubiE" FT /locus_tag="BP0161" FT /product="ubiquinone/menaquinone biosynthesis FT methyltransferase" FT /EC_number="2.1.1.-" FT /note="Similar to Escherichia coli ubiquinone/menaquinone FT biosynthesis methyltransferase UbiE or B3833 SW:UBIE_ECOLI FT (P27851) (251 aa) fasta scores: E(): 4.6e-54, 58.871% id in FT 248 aa, and to Neisseria meningitidis FT ubiquinone/menaquinone biosynthesis methlytransferase UbiE FT or Nmb0743 TR:Q9K075 (EMBL:AE002429) (245 aa) fasta scores: FT E(): 3e-64, 68.033% id in 244 aa" FT /protein_id="CAE40540.1" FT /translation="MQTPHSQPESAPQGEQSTHFGFQSVPEADKARKVAEVFHSVASRY FT DVMNDLMSAGLHRVWKAFTIGRAAVRPGMKVLDIAGGTGDLARAFAKRAGPSGEVWLTD FT INESMLRVGRDRLTDSGLLVPTAVCDAERLPFPSQYFDRVSVAFGLRNMTHKDRALAEM FT TRVLKPGGKLLVLEFSRVAKPLAPAYDWYSFNVLPWMGKKVANDEASYRYLAESIRMHP FT DQETLAGMLRDAGLDRVQYFNLTAGVAALHEGVRLG" FT misc_feature 160015..160716 FT /note="HMMPfam hit to PF01209, ubiE/COQ5 methyltransferase FT family" FT misc_feature 160081..160128 FT /note="ScanRegExp hit to PS01183, ubiE/COQ5 FT methyltransferase family signature 1." FT misc_feature 160441..160485 FT /note="ScanRegExp hit to PS01184, ubiE/COQ5 FT methyltransferase family signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 160891..161913 FT /transl_table=11 FT /locus_tag="BP0162" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5528 TR:Q9HT45 (EMBL:AE004965) (284 aa) fasta FT scores: E(): 1.7e-05, 35.294% id in 323 aa, and to FT Agrobacterium tumefaciens Agr_l_2266p agr_l_2266 FT TR:AAK89700 (EMBL:AE008313) (378 aa) fasta scores: E(): FT 2.7e-05, 28.075% id in 374 aa" FT /protein_id="CAE40541.1" FT /translation="MSRSRFSRFCAMALVAVAGTAMVGASFDAEARRMGGGSSFGRQST FT NITQQRQAVTPPAAGAGSTAGATSAARPATAAAGTAAAGTAAKSGMSRWLGPIAGIAAG FT LGLAALLSHLGLSGAFAEFMASMLLIALVVFAVIFIVRRLRGGAPRQAMQGAYGAAGGN FT RPGQPSQQPMWRESLNPAPAQQPAAAPVAAAAPAAAAAALPKAGDDGNWFIPGDFDTPR FT FLQQAKDQFVRIQGIWDSGEVESLRDFLTDDLISELKPQLEARGAAANKTEVVLLNAEL FT LGIETVSDGHLASVRFSGMLREAPGTEAFRFEEVWNLFKPADGGWLLAGIQQIPVEHAS FT " FT misc_feature 160891..160959 FT /note="Signal peptide predicted for BP0162 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.602 between residues 23 and 24" FT misc_feature join(160903..160971,161170..161238,161248..161316) FT /note="3 probable transmembrane helices predicted for FT BP0162 by TMHMM2.0 at aa 5-27, 94-116 and 120-142" FT CDS 162091..162777 FT /transl_table=11 FT /locus_tag="BP0163" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical 22.2 kDa FT protein in ubiE-rfaH intergenic region YigP or B3834 FT SW:YIGP_ECOLI (P27852) (201 aa) fasta scores: E(): 0.0058, FT 27.397% id in 219 aa, and to Vibrio cholerae hypothetical FT protein Vc0084 TR:Q9KVQ5 (EMBL:AE004099) (207 aa) fasta FT scores: E(): 0.00021, 24.413% id in 213 aa" FT /protein_id="CAE40542.1" FT /translation="MSLLLRTPRGWSAPVDSMLPFAALPTLPRIAARALNALLERESWA FT RDRLARHAGKTVRFALGGFALSLTIDSEGRVQEADSAVVPNVTLSAAESSSLARLLPGD FT GRADFADLTHISGDAALAQVVADLARDLRWDAEDELARVVGDIPAARLLGGARALAGGA FT REAGGRLARNVSEYLAEESAVLVGRPQWEQWRLDLARFGADSDALARSAAALEARLARL FT DARRGA" FT CDS 162774..164336 FT /transl_table=11 FT /gene="ubiB" FT /gene_synonym="aarF" FT /locus_tag="BP0164" FT /product="probable ubiquinone biosynthesis protein" FT /note="Similar to Escherichia coli probable ubiquinone FT biosynthesis protein UbiB or AarF or B3835 or Z5357 or FT ECS4765 SW:UBIB_ECOLI (P27854) (546 aa) fasta scores: E(): FT 8e-94, 52.165% id in 485 aa, and to Neisseria meningitidis FT probable ubiquinone biosynthesis protein UbiB or Nmb0559 FT SW:UBIB_NEIMB (Q9K0N0) (503 aa) fasta scores: E(): FT 2.7e-107, 58.400% id in 500 aa" FT /protein_id="CAE40543.1" FT /translation="MNAMLTFLRLLRILLVSLRYGLDELVLSSLNHPLATCLLRIMRLG FT TRPRAPRGARLRMALESLGPIFVKFGQVLSTRRDLIPADIANELALLQDRVPPFPSAQA FT AACIEAALGAPPAQLFAQFDVDPVASASIAQVHFAVLHDGREVAVKVLRPGMLNVIEKD FT LALLRVVAGVIERLGADGRRLKPREVVAEFDKYLHDELDLVREASNCSQLRRNFGPESG FT RGEMLIVPEVVWEYTASTVFTMQRMYGIPVGQVDRLRAAGIDIPTLARSGVEIFFTQVF FT TDGFFHADMHPGNIYVSDAPQTLGRYIALDFGIVGSLSEFDKNYLAQNFLAFFHRDYRR FT VAQLHIESGWVPPETREEELEGAVRAVCEPYFDRPLAEISLGQVLLRLFQTSRRFNVEI FT QPQLVLLQKTLLNVEGLGRQLDPNLDLWKTAKPYLEHWMRQRIGLTGLRQSLAKEAGQW FT SQMLPSLPRLVHEHFSRPNLTPHLLAEMNRLRRAQEQGNRLTAALTAVLAVAVAVALWA FT LSR" FT misc_feature 164268..164327 FT /note="1 probable transmembrane helix predicted for BP0164 FT by TMHMM2.0 at aa 499-518" FT CDS 164511..164915 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0165" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to The N-terminal region of FT Burkholderia cepacia hypothetical 33.4 kDa protein FT TR:Q9ZGQ4 (EMBL:AF076477) (283 aa) fasta scores: E(): FT 6e-45, 81.538% id in 130 aa" FT /db_xref="PSEUDO:CAE40544.1" FT CDS complement(164895..165845) FT /transl_table=11 FT /locus_tag="BP0166" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40545.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI" FT repeat_region 164895..164926 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(164895..165947) FT misc_feature complement(164931..165464) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(165522..165587) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS join(165948..167273,167273..167281) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0167" FT /product="C-terminal region of a probable ABC transporter, FT ATP-binding protein (Pseudogene)" FT /note="Pseudogene. This CDS is the C-terminal region of FT BP3805 which was disrupted by the insertion of IS481 FT element. In addition, this CDS appears to have a frameshift FT mutation following codon 442. Similar to Vibrio cholerae FT peptide ABC transporter, ATP-binding protein vc0170 FT TR:Q9KVH6 (EMBL:AE004107) (571 aa) fasta scores: E(): FT 2.9e-105, 64.944% id in 445 aa, and to Rhizobium loti ABC FT transporter ATP-binding protein mlr6287 TR:Q989T5 FT (EMBL:AP003008) (616 aa) fasta scores: E(): 2.5e-68, FT 46.991% id in 432 aa" FT misc_feature 165948..166250 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 166020..166064 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 166581..167159 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 166602..166625 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 166929..166973 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT variation 167273 FT /note="(G)1 in pertussis; (G)2 in parapertussis" FT CDS complement(167287..168189) FT /transl_table=11 FT /locus_tag="BP0168" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1451 TR:Q9I3Q0 (EMBL:AE004574) (447 aa) fasta FT scores: E(): 4.6e-21, 48.387% id in 217 aa, and to FT Rhizobium loti Mll4127 protein Mll4127 TR:Q98EQ9 FT (EMBL:AP003003) (294 aa) fasta scores: E(): 3.1e-18, FT 37.011% id in 281 aa" FT /protein_id="CAE40547.1" FT /translation="MPHVRPSNAWRFLRTLWLGAWLAGWALLAQAQQLAPVPEFGARVV FT DQSGVLDAAQRQRLEAQLAALEQRKGAQVAVLIVPSTAPETIEQYATRAFEKWKIGRDK FT VDDGVLLLMASDDRALRIEVGYGLEGAIPDSAAGRIINEYIVPRLRAGDWPGAVQAGVT FT ALERRIEGEELPPPAASGRDEGSRLAGIRGWLGENGIAALVVLLILPGPIAAALAGVGV FT AIYMQSISAGLAMALLVLGIKVIIKALPSGGGGGGGGGGGSGGGGFGGWRGGSGSGGFG FT GFRGGGGGRSGGGGASGRW" FT misc_feature complement(join(167437..167502,167524..167589)) FT /note="2 probable transmembrane helices predicted for FT BP0168 by TMHMM2.0 at aa 200-222 and 229-251" FT misc_feature complement(168097..168189) FT /note="Signal peptide predicted for BP0168 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.971 between residues 31 and 32" FT CDS complement(168167..168796) FT /transl_table=11 FT /locus_tag="BP0169" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0537 TR:Q9I5Z9 (EMBL:AE004490) (202 aa) fasta FT scores: E(): 8.8e-51, 71.981% id in 207 aa, and to FT Rhizobium loti Mll4130 protein TR:Q98EQ7 (EMBL:AP003003) FT (212 aa) fasta scores: E(): 2.3e-29, 48.205% id in 195 aa" FT /protein_id="CAE40548.1" FT /translation="MTITRWLGAGLLALLTTLLSGCGYNAIQAADEQVKASWSQVLNQY FT QRRADLVPRLVKVVDAYMTHERQVLVEVTEARAKVGRVQLTADQLDDPAAVQRFQQAQG FT ELSSALSRLLVVTENYPQLKAEGLFRDLQTELAGTENRLAVERERYVRSVQAYNVLVRQ FT FPEVITAKVFGYAPKANFGVDNEAEITRAPEVKFSNEGGSAPRPAQ" FT misc_feature complement(168710..168775) FT /note="1 probable transmembrane helix predicted for BP0169 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(168710..168796) FT /note="Signal peptide predicted for BP0169 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.770 between residues 29 and 30" FT misc_feature complement(168731..168763) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 169079..170509 FT /transl_table=11 FT /gene="rhlE" FT /locus_tag="BP0170" FT /product="putative ATP-dependent RNA helicase" FT /note="Similar to Escherichia coli putative ATP-dependent FT RNA helicase RhlE or B0797 SW:RHLE_ECOLI (P25888) (454 aa) FT fasta scores: E(): 9.3e-80, 58.658% id in 462 aa, and to FT Anabaena variabilis dead box RNA helicase homolog CrhA FT TR:Q9ZI52 (EMBL:AF040045) (425 aa) fasta scores: E(): FT 4e-74, 59.953% id in 422 aa. Also similar to BP3395 FT (50.740% identity in 473 aa overlap), and to BP3057 FT (41.314% identity in 472 aa overlap)." FT /protein_id="CAE40549.1" FT /translation="MTTSISFADLGLADSLLRAIADTGYTAPTPIQAQAIPLVLQGGDL FT LAAAQTGTGKTAGFTLPILHRLMQTKPAARKPGRPRCLILTPTRELTAQVAESVQTYGK FT YASLSSMVMFGGVNINPQISALKKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDEAD FT RMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEIRSLARGVLNDPGEVSVTPRNTATE FT LVTQTVHLVEQHHKRDLVSHLIRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAVAIHG FT NKSQSARTRALSGFKDGSVAVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRT FT GRAGATGAAVSLVDDSEIKLLKAIERLIKKPIERRAVDGWTPPAGGPTAEDRADRGQRA FT GGDNRAPQARDGQRRATGAHPQGSAPRNAAGPRADAKRNDAGRPQGRAPGETGATRAPA FT PARNRPVGNGTRGVLLGK" FT misc_feature 169130..169780 FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase" FT misc_feature 169223..169246 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 169550..169576 FT /note="ScanRegExp hit to PS00039, DEAD-box subfamily FT ATP-dependent helicases signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 169865..170110 FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain" FT CDS 170543..171172 FT /transl_table=11 FT /locus_tag="BP0171" FT /product="LysE family efflux protein" FT /note="Similar to Escherichia coli homoserine/homoserine FT lactone efflux protein RhtB or B3824 SW:RHTB_ECOLI (P27847) FT (206 aa) fasta scores: E(): 2e-23, 37.198% id in 207 aa, FT and to Pseudomonas aeruginosa hypothetical protein Pa5249 FT TR:Q9HTU5 (EMBL:AE004937) (209 aa) fasta scores: E(): FT 4.7e-39, 54.106% id in 207 aa. Also similar to BP0568, FT 42.654% identity in 211 aa overlap" FT /protein_id="CAE40550.1" FT /translation="MTLSTWLTFFVASWAISFSPGAGAISAMSSGLKYGFARGYWNTAG FT LILGILFQFLIVAVGLGAVLATSELAFTLVKYAGVVYLIYLGMRQIRTDAAPVTVDAGD FT PHRASIRELVGRGFLINTMNPKGTVFLLAVVPQFVDPAQPLTQQYLALAGTLAFTDLVA FT MDVYTLLAAKVLRMLRKAHHIRWMNRVFGSLFILAGVFLATFRRHS" FT misc_feature 170543..170614 FT /note="Signal peptide predicted for BP0171 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.432 between residues 24 and 25" FT misc_feature join(170570..170638,170672..170740,170750..170803, FT 170891..170959,170987..171055,171092..171160) FT /note="6 probable transmembrane helices predicted for FT BP0171 by TMHMM2.0 at aa 10-32, 44-66, 70-87, 117-139, FT 149-171 and 184-206" FT misc_feature 170747..171067 FT /note="HMMPfam hit to PF01810, LysE type translocator" FT CDS 171197..172828 FT /transl_table=11 FT /gene="prfC" FT /gene_synonym="tos" FT /gene_synonym="miaD" FT /locus_tag="BP0172" FT /product="peptide chain release factor 3" FT /note="Similar to Escherichia coli peptide chain release FT factor 3 PrfC or Tos or MiaD or B4375 SW:RF3_ECOLI (P33998) FT (528 aa) fasta scores: E(): 2e-108, 53.537% id in 523 aa, FT and to Neisseria meningitidis peptide chain release factor FT 3 Nmb0626 TR:Q9K0H6 (EMBL:AE002418) (531 aa) fasta scores: FT E(): 5.3e-121, 59.699% id in 531 aa" FT /protein_id="CAE40551.1" FT /translation="MRQYNPPAMNIPQEVARRRTFAIISHPDAGKTTLTEKLLLFAGAI FT QIAGSVKARKASRHASSDWMEIEKQRGISVASSVMQMEYRDCVINLLDTPGHQDFSEDT FT YRVLTAVDAALMVIDAANGVEPQTIRLLQVCRARNTPIITFINKLDREVREPLELLSEI FT EGHLGMDTVPFSWPVGMGKAFGGVFDIRRNRMRIFRAGQERRGEDDEFIDGLDNPEIPR FT RFGAAFAQASGEIELINEAAPAFDREAFLAGKQTPVFFGSAINNFGVQEVLDALVDQAP FT APGPRQALEREVRPDEPKFTGVVFKVQANMDPAHRDRVAFVRVSSGRFERGMRLKVART FT GKEMRPNNVVSFLSQRRELLDEAYAGDVIGIPNHGVLQLGDVLTEGESLRFTGLPFFAP FT ELFQAVEVKDPLRTKQLRVGLTQLGEEGAIQVFRPEAAGGALLLGAVGQLQFEVVAHRL FT KTEYGVDARMMPSRYTSARWITSDDPRALRKFMDANAAHIAYDVVDAAAFLITSPAQLR FT VAEDLYPNVKFHALREHGGKVFGDKA" FT misc_feature 171242..172621 FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT misc_feature 171383..171430 FT /note="ScanRegExp hit to PS00301, GTP-binding elongation FT factors signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 172853..173536 FT /transl_table=11 FT /locus_tag="BP0173" FT /product="putative exported protein" FT /note="Similar to Mycobacterium leprae hypothetical proline FT rich protein Ml1505 TR:Q9CBW9 (EMBL:AL583922) (182 aa) FT fasta scores: E(): 7, 23.977% id in 171 aa" FT /protein_id="CAE40552.1" FT /translation="MRVAMSWRLLIATLLVALGAAAWGGIQLGDWLVAHAPQAAPAPGQ FT EGDASQQPVLDANGRSYVAQPPQPRVDGTLGVPDQPASRDWAVNTVSLFDTTGDPAVQI FT SRDSITMDRAREIAANSDVPLPSGNSDITTLDLQALGGQAPIVPQEAIPASGMQQNPAA FT VAQVAPQTNRAGGGNWQDALRRELAHCATQGFFERPSCSWAARNKYCAPNRAWGTMAEC FT PRRPD" FT misc_feature 172853..172924 FT /note="Signal peptide predicted for BP0173 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.746 between residues 24 and 25" FT misc_feature 172871..172930 FT /note="1 probable transmembrane helix predicted for BP0173 FT by TMHMM2.0 at aa 7-26" FT CDS complement(173618..174094) FT /transl_table=11 FT /gene="bfr" FT /locus_tag="BP0174" FT /product="bacterioferritin" FT /note="Similar to Escherichia coli bacterioferritin Bfr or FT B3336 SW:BFR_ECOLI (P11056) (158 aa) fasta scores: E(): FT 7.8e-33, 60.759% id in 158 aa, and to Pseudomonas FT aeruginosa bacterioferritin BfrB or Pa3531 TR:Q9HY79 FT (EMBL:AE004773) (158 aa) fasta scores: E(): 5.6e-39, FT 68.790% id in 157 aa" FT /protein_id="CAE40553.1" FT /translation="MKGDKTVIQFLNKQLTNELTAINQYFLHARMLRHWGFNKLGKHEY FT EESIGEMKHADRLIERIFMLDGLPNLQDLHKLLIGEDVPELLACDLKLEQAAQATVKEA FT IAHCESVRDYVSRDLFQDILDDTEEHIDYLETQIGLVDQVGLQNYLQSQMEVDG" FT misc_feature complement(173633..174094) FT /note="HMMPfam hit to PF01334, Bacterioferritin" FT repeat_region 174199..174230 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 174199..175251 FT CDS 174301..175251 FT /transl_table=11 FT /locus_tag="BP0175" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40554.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 174559..174624 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 174682..175215 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(175220..175251) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(join(175248..175760,175759..176109)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0176" FT /product="two-component response regulator (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 117. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa two-component response regulator OmpR or Pa5200 FT TR:Q9HTY9 (EMBL:AE004933) (247 aa) fasta scores: E(): FT 0.0013, 31.250% id in 256 aa, and to Vibrio cholerae FT response regulator homolog OmpR TR:Q9X2S6 (EMBL:AF051157) FT (240 aa) fasta scores: E(): 0.0022, 29.020% id in 255 aa" FT /db_xref="PSEUDO:CAE40555.1" FT variation complement(175759) FT /note="G in pertussis; G(TG) in parapertussis" FT CDS 176367..176894 FT /transl_table=11 FT /locus_tag="BP0177" FT /product="putative lipoprotein" FT /note="Similar to Synechocystis sp hypothetical 31.6 kDa FT protein Slr0841 TR:Q55426 (EMBL:D64003) (291 aa) fasta FT scores: E(): 3.1e-05, 31.081% id in 148 aa, and to FT Escherichia coli heat shock protein HslJ or B1379 FT SW:HSLJ_ECOLI (P52644) (140 aa) fasta scores: E(): 0.38, FT 28.571% id in 84 aa. Also similar to the N-terminal region FT of the adjacent CDS, BP0178, 44.643% identity (46.584% FT ungapped) in 168 aa overlap" FT /protein_id="CAE40556.1" FT /translation="MPIRPFTRACLVAALGAVLAGCASNTGQAQAEGAAAANAATSADS FT FAQTTWELVRWTKADGGYRVISHGDNGEPIFLTFFAQGKQYRVSGFAGCNRYTGAYRLR FT DGKLQITAPASTRMACPQPERARLEADYLRALAQIRSFTLDSGGAPRHLTFNVQGGDVL FT DFMRRQDPPTPE" FT misc_feature 176367..176459 FT /note="Signal peptide predicted for BP0177 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.0.807 between residues 31 and 32" FT misc_feature 176400..176432 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 176986..177801 FT /transl_table=11 FT /locus_tag="BP0178" FT /product="putative lipoprotein" FT /note="Similar to Synechocystis sp hypothetical 31.6 kDa FT protein slr0841 TR:Q55426 (EMBL:D64003) (291 aa) fasta FT scores: E(): 0.00023, 33.775% id in 151 aa. Its N-terminal FT region is similar to the adjacent CDS, BP0177, 44.643% FT identity (46.584% ungapped) in 168 aa overlap" FT /protein_id="CAE40557.1" FT /translation="MSAISPGRVALSFSLLLALAACAADPAGGGASRAQAPERHSDMLA FT QTNWELARWTRPGGALRPVPHGGAGKTAPITLSFTHQRGAARLAGFAGCNNYSGQYTIA FT NGLLIVTAPPVSTRMACANADLARLEQDYLAGLTAVTASRLDHDTRPQRLTLALRSGDV FT LDFARRADPLAGGQPGAAKLVYVASSKAPCSAGAGRAQCYQVRDSASQPWLLWYGDITG FT FAFQPGIEYRLRVVEVRDPNPPADASGVRWVLDSVVEQRVAAPRPAPAP" FT CDS 177862..178596 FT /transl_table=11 FT /locus_tag="BP0179" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf2609 TR:Q9PAA9 (EMBL:AE004068) (299 aa) fasta scores: FT E(): 9.9e-46, 55.230% id in 239 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa0858 TR:Q9I583 FT (EMBL:AE004520) (312 aa) fasta scores: E(): 1.2e-32, FT 42.017% id in 238 aa" FT /protein_id="CAE40558.1" FT /translation="MTAVVNIAAYKFVSIANPADLREPMLEQAGQRQLKGTVLLAPEGI FT NLFLAGAADAIEGFLRWLRADARFADLQAKYSESARMPFRKLLVKVKREIIRMDHPAIR FT PEAGRAPAVDAATLRRWLAQGRDDQGRELVMLDTRNAFEVEVGTFRGALDWRIERFTQF FT PQAVRDNQAALAGKTVVSFCTGGIRCEKAAIYMAEAGIEHVYQLEGGILKYFEETDGAG FT FDGACFVFDERVALDAALAPQA" FT CDS complement(178634..180712) FT /transl_table=11 FT /gene="metG" FT /locus_tag="BP0180" FT /product="methionyl-tRNA synthetase" FT /EC_number="6.1.1.10" FT /note="Similar to Escherichia coli methionyl-tRNA FT synthetase MetG or B2114 SW:SYM_ECOLI (P00959) (676 aa) FT fasta scores: E(): 2.1e-45, 51.783% id in 701 aa, and to FT Neisseria meningitidis methionyl-tRNA synthetase Nmb0030 FT TR:Q9K1Q0 (EMBL:AE002361) (685 aa) fasta scores: E(): FT 1.8e-143, 52.857% id in 700 aa" FT /protein_id="CAE40559.1" FT /translation="MSRTLFVTTALPYANGSFHIGHIMEYIQADIWVRSMRMAGHTVHF FT VGADDAHGAPIMLKAEKEGITPQALVARYAAERPRYLDGFHIRFDHWHSTDTPENVALS FT QEIYRALKSEGLIETRSIEQFYDPVKGMFLADRYIKGECPRCHAKDQYGDSCEVCGAVY FT APTELINPYSALTGAAPVLKSSDHFFFKLSDPRCVEFLQQWTTGANRQGVKHLQAEVQA FT KTREWLVGDDGEAKLGDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKSYCAA FT KGLDFDALLDPAGPTEQVHFIGKDIIYFHALFWPAMLKFAGRKTPDQLNVHGFITVSGE FT KMSKSRGTGISPLRYLEIGMDAEWLRYYMAAKLNARVEDMDFNPEDFVARVNSDLVGKY FT VNIASRAAAFITRHFDGELAYDGDTDALAAEFAQQAESIRAAFEAREYNRAVREIMAHA FT DRINQAFDAAQPWVMAKGIGAADAATRARLQDICSRALAGFKALSVMLAPVLPALASRV FT ARELFGANADFAWGDAQQLPQRVAPFKHLMQRVDPKLLDDLFEPPAAEASAPAALPGGE FT ALADTITIDDFAKIDLRIARIVNCEEVEGSTKLLRLTLDVGEGRHRNVFSGIKSAYQPQ FT DLVGKLTVLVANLAPRKMKFGVSEGMVLAASHADEKAEPGIYVLEPWPGAQPGMRVR" FT misc_feature complement(178643..178939) FT /note="HMMPfam hit to PF01588, Putative tRNA binding FT domain" FT misc_feature complement(179369..180709) FT /note="HMMPfam hit to PF00133, tRNA synthetases class I (I, FT L, M and V)" FT misc_feature complement(180644..180679) FT /note="ScanRegExp hit to PS00178, Aminoacyl-transfer RNA FT synthetases class-I signature." FT CDS complement(180962..181234) FT /transl_table=11 FT /locus_tag="BP0181" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical/unknown FT transmembrane protein Smc03794 TR:CAC47756 (EMBL:AL591793) FT (83 aa) fasta scores: E(): 4.5, 30.488% id in 82 aa" FT /protein_id="CAE40560.1" FT /translation="MVNTLFRFFSAALFALLGLIGMMMALVFMASTAIAVGVLYLVAKV FT RGKPFGVRAYWSQRQAARPGPFQAASAPFGQPRGDVIDVEAREVR" FT misc_feature complement(181109..181174) FT /note="1 probable transmembrane helix predicted for BP0181 FT by TMHMM2.0 at aa 20-42" FT misc_feature complement(181130..181234) FT /note="Signal peptide predicted for BP0181 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.867 between residues 35 and 36" FT CDS 181333..182421 FT /transl_table=11 FT /locus_tag="BP0182" FT /product="putative iron sulfur binding protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3481 TR:Q9HYC8 (EMBL:AE004769) (364 aa) fasta FT scores: E(): 6.1e-63, 54.270% id in 363 aa, and to Xylella FT fastidiosa polysaccharide export protein Xf2301 TR:Q9PB44 FT (EMBL:AE004041) (303 aa) fasta scores: E(): 3.8e-62, FT 67.424% id in 264 aa. Also similar to BP1467, 60.000% FT identity (60.167% ungapped) in 360 aa overlap." FT /protein_id="CAE40561.1" FT /translation="MMSITIEQIRGALAGVADPQTGLELNVCVKDRDIHLAADPAALTI FT ELGYPAGGVADSVRALAGAALAAAGLGAVRVAVTWNIIAHAVQPGLKPLPQVRNIIAVA FT SGKGGVGKSTTAVNLALALAAEGARAGLLDADIYGPSVPAMLGLAGRPESRDNKTMEPL FT VGHGLQANSIGLLIDADAPAIWRGPMVTQALEQLLRQTNWRDLDYLVVDMPPGTGDIAL FT TLAQKVPVAGAVIVTTPQDIALLDARKGLRMFQKVHVPILGVVENMAVHICPQCGHAEH FT IFGAGGGRRVAEQYEVPWLGSLPLQRAIREQTDAGNPTVAAEPESEVAGIYRDIARRVA FT ARIAGLPRDMAGKLPAVVVRPA" FT misc_feature 181627..181719 FT /note="HMMPfam hit to PF00142, 4Fe-4S iron sulfur cluster FT binding proteins, NifH/frxC family" FT misc_feature 181648..181671 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 181939..181989 FT /note="ScanRegExp hit to PS01215, Mrp family signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS 182425..184329 FT /transl_table=11 FT /locus_tag="BP0183" FT /product="putative exported protein" FT /note="Similar to Xanthomonas oryzae pvoryzae putative FT outer membrane protein TR:Q9EY32 (EMBL:AY010120) (593 aa) FT fasta scores: E(): 8.2e-16, 24.540% id in 652 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa2543 FT TR:Q9I0U1 (EMBL:AE004682) (579 aa) fasta scores: E(): FT 9.1e-13, 24.342% id in 608 aa" FT /protein_id="CAE40562.1" FT /translation="MRRILRVCPALLFALAAGQVHAKLPEVIVDPGGVPPAALQAINSA FT VDAIARLSEDQDGGEIDRLRRRARDATLAALATQGYFTPTVTLTPGTDVGGETWDIAIE FT PGPRARVASVDLKFTGRVARPEYAARIQKWRDDWALKAGQPFINGDWNKAKSGLLDAVS FT TRDFLLAHMTHSLAEVDAETAQVRLSVEIDSGPAVRMGALQTDGLQRVPESLVRRYVKY FT SEGAAYDQDKLDQWQQELQSTAFFRGAFVTLDQGARGGQDDVKVTAPGASARAPGSSGL FT ASVAPAGDAEVAGGPTAAAPVLDSQGEITLPVDVRVVEAPPKRLAVSLGVDDEAGVRFE FT TIYRQNVVFGQPVTMETGLGVDRLRQRAYLDFNLPPDERGRKDSFGLLFDHSDVQELDV FT TRYALGVTRLQERKGAGDSRVEYETRWGGLLAHDHVKIDGGDEYDLPTATLTAEWLRRD FT VNSKYDPREGNLIAVGGGVGATLDDGQPYMRLRLRGQKWWPIGKLDVLTLRGEVGRLWS FT NGRTRVPDDFGFRTGGARSIRGYRYQSIGVEQDDAIVGAPTLAVASVEYDHYFNERWGI FT GVFVDAGDAAESFGDMDIAVGYGVGARVRTPAGPLFLDVAYGQRERDLRLHFSLGIAF" FT misc_feature 182425..182490 FT /note="Signal peptide predicted for BP0183 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT misc_feature 182986..183006 FT /note="ScanRegExp hit to PS00307, Legume lectins beta-chain FT signature." FT CDS 184326..188024 FT /transl_table=11 FT /locus_tag="BP0184" FT /product="putative exported protein" FT /note="Similar to Neisseria meningitidis putative FT periplasmic protein Nma0295 TR:Q9JWM6 (EMBL:AL162752) (1371 FT aa) fasta scores: E(): 1.4e-18, 23.644% id in 1383 aa, and FT to Pseudomonas aeruginosa hypothetical protein Pa2542 FT TR:Q9I0U2 (EMBL:AE004682) (1221 aa) fasta scores: E(): FT 7.2e-14, 27.344% id in 1280 aa" FT /protein_id="CAE40563.1" FT /translation="MSKIWGVVRHILVWWVPGVAMLAALACGFVFWTVASQNGTRLLLD FT TVARQLDGEIAGVRGSVLRGLRVDRIRLSVADVDVAVDDLRLDVAWRALGQRLLHVREL FT AATRVEVGLHTPATPPPDSDEPFALRLPVELALDRLSLGEFVLRQDGEPLPVSAGELQA FT SLAAGRHGARLTLDSLRVTHAVGTLRAQGRLDVASLAQPWPLTASLDLQAQGSGPESPL FT CLAPLLDARDKTAKDKAAKDKGKDKGKDKGKDKGKDKGKDKGKDKGKDKGKDKGKDDAG FT EKPDEPADPCGLALQVQAQGTLEQLEAELTGAGQGLALEARAGLLPQAPFPLRTASLKL FT TREDKSSLAATLDWQPQPGQPGRDRVVATFEAERLDLQRLAGEAIPPAMLSARGGLDAE FT VDDLSSLHRATLTLDVTKGSSWNRHPLAGKVAASVSALGDPPGAFATAAPAQPHALPGG FT LWVDQLDVDLQLGPNRVRAQGKLDERAGALKLDAQAPRLDAFWPGIPGAASVKAALDGA FT LARHRGRIEAAYTPADARARVLGRARAQAQLEFSGGWGAGPAAEGAAAGWRGSVSRLTA FT DSAGFALALERPVTLAYVPEALAPQWQWQVGATTLALTFPDKQRVALAHAASRGGAGRW FT ETAGRADALVITAAMVRQILVALDPEAVARAERDSGSPVNAPVPAAQRRISLDASWDLK FT FAGALAGKVRVARRDGDLRIPGDPPIPLGLRTLVLEANATPTGGQASRLDARLDMATAR FT MGAINGTASATLGGLALDPRQPIRVALDADVTDLAWLGLFVGDTLEVGGMLKANVRAQG FT SLDGKWNASGTVNGDKLRVVRIDDGVRLIDGMLRARLQDDRVILDSLRFPASLRVMPAE FT WRTREWVSTNPDAKGGYLEATGQWELSAARGQVRLQLHRFPALQRSDRYGMVSGVVTLD FT AALPRISINGDITADAGWVSLEILQGVPTLDDDVKVVRAGQKNAQGDGPPLQIDMNLKV FT DMGPRFYITGMGLDAGLLGSIQIRLQEGRLTGYGALRTRGGGIEAYGQKLRLRRGTLTF FT QGRLDNPLLDIEALRTGEQVEAGVRVAGTAQRPRIDLVSYPDVSDVEKLSWLVLGRGPD FT ASGGDTALLLSVGTALLGGGQPFYKQFGLDDVSVRSGAIGSSGSLLPDRTVAAGVNRDS FT DADLATQFLVASKRFANGITLSVEQALAGSETVGRASYRLARGLSLDLKAGSVNGIALV FT YRILLDD" FT misc_feature 184326..184403 FT /note="Signal peptide predicted for BP0184 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.928) with cleavage site FT probability 0.359 between residues 26 and 27" FT misc_feature 184359..184427 FT /note="1 probable transmembrane helix predicted for BP0184 FT by TMHMM2.0 at aa 12-34" FT misc_feature 184374..184406 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 188085..188648 FT /transl_table=11 FT /gene="dcd" FT /gene_synonym="dus" FT /gene_synonym="paxA" FT /locus_tag="BP0185" FT /product="deoxycytidine triphosphate deaminase" FT /EC_number="3.5.4.13" FT /note="Similar to Escherichia coli deoxycytidine FT triphosphate deaminase Dcd or Dus or PaxA or B2065 FT SW:DCD_ECOLI (P28248) (193 aa) fasta scores: E(): 8.4e-05, FT 27.389% id in 157 aa, and to Xylella fastidiosa FT deoxycytidine triphosphate deaminase Xf0762 TR:Q9PFB6 FT (EMBL:AE003917) (191 aa) fasta scores: E(): 1.4e-64, FT 81.675% id in 191 aa" FT /protein_id="CAE40564.1" FT /translation="MSIKSDRWIRRAAEAGMIEPFEPGQVRTAGGNRIVSYGTSSYGYD FT VRCADEFKIFTNINSTIVDPKQFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVL FT TICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKVYAGEGCAQMLFLESDE FT VCETSYRDRGGKYQGQRGVTLPRT" FT misc_feature 188256..188642 FT /note="HMMPfam hit to PF00692, dUTPase" FT CDS complement(188656..189078) FT /transl_table=11 FT /locus_tag="BP0186" FT /product="conseved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0803 TR:Q9I5D5 (EMBL:AE004515) (146 aa) fasta FT scores: E(): 1.4e-32, 61.111% id in 144 aa, and to FT Rhizobium loti Mlr1197 protein TR:Q98L34 (EMBL:AP002996) FT (137 aa) fasta scores: E(): 3.1e-19, 44.203% id in 138 aa" FT /protein_id="CAE40565.1" FT /translation="MPAPATVASPVVTCLRYRNASAAIEWLVHAFGFEAQRIVPGPADT FT IVHAQLTLGSGMIMLASVTDTPFSRYMKQPDEVGGVETQSVYLVVADPDQAYRDAQAAG FT AEILIDIADADYGGRGFSCRDPEGHIWSVGSYDPWQ" FT misc_feature complement(188671..189033) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS complement(189106..189525) FT /transl_table=11 FT /locus_tag="BP0187" FT /product="putative lyase" FT /note="Similar to Streptomyces coelicolor putative lyase FT Sci7.11C TR:Q9X9X9 (EMBL:AL096743) (130 aa) fasta scores: FT E(): 0.0041, 33.846% id in 130 aa, and to Streptomyces sp FT daunomycin C-14 hydroxylase TR:Q55078 (EMBL:U50973) (275 FT aa) fasta scores: E(): 0.015, 29.851% id in 134 aa" FT /protein_id="CAE40566.1" FT /translation="MQAQVLINIDVPDAARAALFYERAFGLRPQRRLGPQAIEMAGAAV FT PIYLLEKATGSQAATGTSQGRDYARHWTPVHLDFVVDDCDRAVATAVAAGAMLEDPPHS FT HAWGRIAHLSDPYGNGVCILQFLGEGYDALAAAAP" FT misc_feature complement(189148..189498) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS complement(join(189554..190024,190027..190074)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0188" FT /product="putative acetyltransferase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 16. The frameshift occurs within a FT homopolymeric tract of (T)5. The sequence has been checked FT and believed to be correct. Similar to Rhizobium meliloti FT putative acetyltransferase protein Smb21153 TR:CAC49219 FT (EMBL:AL603645) (166 aa) fasta scores: E(): 4.4e-12, FT 34.731% id in 167 aa, and to Agrobacterium tumefaciens FT Agr_c_4257p TR:AAK88086 (EMBL:AE008149) (171 aa) fasta FT scores: E(): 1.4e-12, 36.364% id in 165 aa" FT /db_xref="PSEUDO:CAE40567.1" FT misc_feature complement(189641..189895) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT variation complement(190022..190026) FT /note="(T)5 in pertussis; (T)3 in parapertussis" FT CDS 190127..190624 FT /transl_table=11 FT /locus_tag="BP0189" FT /product="hypothetical protein" FT /note="Similar to the C-terminal regions of Deinococcus FT radiodurans conserved hypothetical protein Dr0535 TR:Q9RWY0 FT (EMBL:AE001911) (825 aa) fasta scores: E(): 1.1, 29.762% id FT in 168 aa, and to Neisseria meningitidis alanyl-tRNA FT synthetase Nmb1595 TR:Q9JYG6 (EMBL:AE002510) (874 aa) fasta FT scores: E(): 1.2, 27.273% id in 154 aa" FT /protein_id="CAE40568.1" FT /translation="MKIREKRGCFAAQEPQMFGFRRKDTQQYDQEAQDAFVERVAAAAR FT DFVAAVPAGAGLDYSPASIAALDAVLEQAHLGALALDPVQRVGAAAYLYEVARRRHGGL FT YEVCDDDDPVVLVTGEPEFDVCLCAIAKVERRIDAGPQEDLRPFFGRYEQAVAARRPDI FT IR" FT CDS 190779..193049 FT /transl_table=11 FT /locus_tag="BP0190" FT /product="probable orn/arg/lys decarboxylase" FT /EC_number="4.1.1.19" FT /note="Similar to Escherichia coli biodegradative arginine FT decarboxylase AdiA or Adi or B4117 SW:ADIA_ECOLI (P28629) FT (755 aa) fasta scores: E(): 4.9e-69, 38.070% id in 767 aa, FT and to Pseudomonas aeruginosa probable orn/arg/lys FT decarboxylase Pa1818 TR:Q9I2S7 (EMBL:AE004608) (751 aa) FT fasta scores: E(): 3.1e-150, 49.340% id in 758 aa" FT /protein_id="CAE40569.1" FT /translation="MKFRFPIFIIDEDYRSENASGLGIRALASAIEAEGVEVIGVTSYG FT DLSSFAQQQSRASAFILSIDDEEFDVDSPEDVAGAIKNLRTFIGELRFRNADIPIYLYG FT ETRTSEHIPNDILRELHGFIHMFEDTPEFVARHIIREARSYVDGLPPPFFRELVKYAQD FT GSYSWHCPGHSGGVAFLKSPVGQMFHQFFGENMLRADVCNAVDELGQLLDHTGPVAESE FT LNAARIFHADHCFFVTNGTSTSNKVVWHANVAAGDVVVVDRNCHKSILHAITMTGAIPV FT FLRPTRNHLGIIGPIPLDEFDPENIRRKIEANPFAREALNKKPRILTLTQSTYDGVIYN FT VEMIKEKLGTYVDTLHFDEAWLPHAAFHEYYRDMHAIGPDRPRSQDAMVFATHSTHKLL FT AGISQASQIIVQESESRKLDRNLFNEAYLMHTSTSPQYAIIASCDVAAAMMEPPGGTAL FT VEESIREAMDFRRAMRKVASEFGKDDWWFKVWGPNRLAPEGIGHRDDWVLESGDHWHGF FT GDLAPGFNMLDPIKATIITPGLDMSGSFGESGIPAALVSKYLAEHGVVVEKTGLYSFFI FT LFTIGITKGRWNTLLTALQQFKDDYDRNQPLWRILPEFCRGHRRYERMGLRDLCQQIHE FT AYRERDVARLTTEMYLSDMVPALKPSDAFARMAHREVERVEIDQLEGRVTGVLLTPYPP FT GIPLLIPGERFNRTIVQYLQFAREFNERFPGFETYIHGLADEEGPDGAKRYYVDCLKDA FT GEQ" FT misc_feature 191223..193013 FT /note="HMMPfam hit to PF01276, Orn/Lys/Arg decarboxylase" FT misc_feature 191952..191996 FT /note="ScanRegExp hit to PS00703, Orn/Lys/Arg FT decarboxylases family 1 pyridoxal-P attachment site." FT CDS 193098..194330 FT /transl_table=11 FT /locus_tag="BP0191" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smc00763 TR:CAC45279 (EMBL:AL591784) (394 aa) fasta FT scores: E(): 4.8e-59, 57.431% id in 397 aa, and to FT Haemophilus influenzae hypothetical protein Hi0933 FT SW:YHIN_HAEIN (P44941) (401 aa) fasta scores: E(): 5.7e-65, FT 44.444% id in 396 aa" FT /protein_id="CAE40570.1" FT /translation="MSSREYPVSMFDVAVIGAGAAGMMCAAVAGQRGLRMVLIDHAAKL FT AEKIRISGGGRCNFTNLGAGPANFLSDNPHFCRSALAGYTPQDFLGLLRRHRVHWHEKH FT RGQLFCDDSSETIIEVLRAECGQGGVAWRMPCRVDEIARREGGGFTLRTSTGAIDARAV FT VVATGGMAIPQLGATDYALKVARQFGLKVVEPRPALVPLTFDPAQWQPFAALSGVALEV FT TLSTGQGKGRAAFLEDLLFTHRGLSGPAILQISSYWKPGEPIVLDLAPGRDLAAELIGA FT KPGNRQQLHTVLAGLWPRRLADTWLDVAGRAVGADLAAARLADVPDRTLRALAALIHDW FT RLVPSGTAGYKKAEVMRGGVDTRALDQKSMQARGVPGLYFIGEAVDVTGWLGGYNFQWA FT WASGYACGNAL" FT misc_feature 193098..193184 FT /note="Signal peptide predicted for BP0191 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.778) with cleavage site FT probability 0.686 between residues 29 and 30" FT misc_feature 193134..193187 FT /note="1 probable transmembrane helix predicted for BP0191 FT by TMHMM2.0 at aa 13-30" FT repeat_region 194327..194358 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 194327..195379 FT CDS 194429..195379 FT /transl_table=11 FT /locus_tag="BP0192" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40571.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 194687..194752 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 194810..195343 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(195348..195379) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 195482..196117 FT /transl_table=11 FT /gene="sodA" FT /locus_tag="BP0193" FT /product="superoxide dismutase [Mn]" FT /EC_number="1.15.1.1" FT /note="Previously sequenced as Bordetella pertussis FT superoxide dismutase [Mn] SodA SW:SODM_BORPE (P53642) (211 FT aa) fasta scores: E(): 1.1e-85, 100.000% id in 211 aa, and FT similar to Pseudomonas putida superoxide dismutase [Mn] FT SodA SW:SODM_PSEPU (P77929) (203 aa) fasta scores: E(): FT 1.4e-58, 73.399% id in 203 aa. Also similar to BP2761, FT 40.201% identity (41.885% ungapped) in 199 aa overlap." FT /protein_id="CAE40572.1" FT /translation="MPYVLPALSYAYDALEPHIDARTMEIHHTRHHQTYVNGLNAALEG FT AGLDSEEPVEQLLRRIPALPPGIHGAVRNHGGGHANHSLLWTVMSPSGGGRPDGRLAAD FT IQAQLGGHDAFQAAFTQAALGRFGSGWAWLTVTPAGRLRVDSSANQDSPLMEGNTPILG FT LDVWEHAYYLQYQNRRPEYIEAFYRVVDWAEVARRYEIALAELGREAA" FT misc_feature 195485..196093 FT /note="HMMPfam hit to PF00081, Iron/manganese superoxide FT dismutases, alpha-hairpin domain" FT misc_feature 195974..195997 FT /note="ScanRegExp hit to PS00088, Manganese and iron FT superoxide dismutases signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 196114..197007 FT /transl_table=11 FT /locus_tag="BP0194" FT /product="probable metal transporter" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4467 TR:Q9HVV1 (EMBL:AE004860) (310 aa) fasta FT scores: E(): 2.5e-41, 54.864% id in 257 aa, and to FT Myxococcus xanthus GufA protein SW:GUFA_MYXXA (Q06916) (254 FT aa) fasta scores: E(): 2.1e-36, 49.412% id in 255 aa. Also FT similar to BP2140, 47.458% identity (47.782% ungapped) in FT 295 aa overlap." FT /protein_id="CAE40573.1" FT /translation="MNTHSRHRVRPALTSVSAMTLAVLVACLACYQLWEFLDRRWPHVA FT LAMAGGMVAAGATALGAVPVLFSQTLSQRVQDCMFGFGAGVMLAASAFSLVVPGIAAAG FT AQGYGPWGAGILVGAAILLGGAVLLASDRLLPHEHFIKGKEGRASRTLRRTWLFVFAIM FT LHNVPEGLAIGVGYAGSDSLRGAALATGIAIQDVPEGLVVALALLAAGYSRAFSVALGM FT LSGLVEPLGAIVGAAVVGWSAAMLPWGLGFAAGAMLFVISHEIIPESHRKGHEVPATAG FT LMLGFVLMMLLDTALG" FT misc_feature 196114..196200 FT /note="Signal peptide predicted for BP0194 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.671 between residues 29 and 30" FT misc_feature join(196150..196218,196246..196314,196351..196419, FT 196432..196500,196579..196647,196675..196743, FT 196762..196830,196843..196911,196930..196989) FT /note="9 probable transmembrane helices predicted for FT BP0194 by TMHMM2.0 at aa 13-35, 45-67, 80-102, 107-129, FT 156-178, 188-210, 217-239, 244-266 and 273-292" FT misc_feature 196162..196194 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 197402..198502 FT /transl_table=11 FT /gene="gcvT" FT /locus_tag="BP0195" FT /product="glycine cleavage system T protein" FT /EC_number="2.1.2.10" FT /note="Similar to Escherichia coli aminomethyltransferase FT GcvT or B2905 SW:GCST_ECOLI (P27248) (363 aa) fasta scores: FT E(): 5.7e-67, 53.406% id in 367 aa, and to Pseudomonas FT aeruginosa glycine-cleavage system protein T1 GcvT1 or FT Pa5215 TR:Q9HTX5 (EMBL:AE004934) (360 aa) fasta scores: FT E(): 1.6e-71, 59.280% id in 361 aa" FT /protein_id="CAE40574.1" FT /translation="MSAPLKRTPLAEEHLAAGACMVDFGGWDMPLAYGSQLEEHHAVRQ FT DAGMFDVSHMLNVDVGGADATAFLRRLVANDVARLATPGKALYSCMLNPQGGIIDDLII FT YYFAPDQWRVVVNAGTADKDIAWMQRVAAADGFDVVIAPRRDLAMVAVQGPNARAKVWA FT ARPAWQAASEPLAPFSAAAVEAGTLVARTGYTGEDGFEIVLPADAVVQLWRDLLAQGVR FT PCGLGARDTLRLEAGMNLYGQDMDELVHPDQAGLSWTVALKDEARRFVGRDAIEQFAVP FT RAFVGLKLQERGVMRAHMPVRCAQGMGELTSGTMSPTLGVSVGFARMPVGVQPGDAVEV FT EIRGKWVPALVCKLPFVRHGKAVEHS" FT misc_feature 197546..198478 FT /note="HMMPfam hit to PF01571, Glycine cleavage T-protein FT (aminomethyl transferase)" FT CDS 198584..198958 FT /transl_table=11 FT /gene="gcvH" FT /locus_tag="BP0196" FT /product="glycine cleavage system H protein" FT /note="Similar to Escherichia coli glycine cleavage system FT H protein GcvH or B2904 SW:GCSH_ECOLI (P23884) (128 aa) FT fasta scores: E(): 4e-20, 53.659% id in 123 aa, and to FT Pseudomonas aeruginosa glycine cleavage system protein H1 FT GcvH1 or Pa5214 TR:Q9HTX6 (EMBL:AE004934) (129 aa) fasta FT scores: E(): 1.3e-22, 56.198% id in 121 aa" FT /protein_id="CAE40575.1" FT /translation="MSLPTDRKYTESHEWVQAEGDVFVVGITDNAQEQLGDLVFVGDVK FT VGATLKAGETAGVVESVKAASDIYAPVDGEIVAFNDELEANPSLINESAYTAWIFKIKP FT ANAADLDKLLDAAGYQAVAG" FT misc_feature 198587..198955 FT /note="HMMPfam hit to PF01597, Glycine cleavage H-protein" FT CDS 199018..201882 FT /transl_table=11 FT /gene="gcvP" FT /locus_tag="BP0197" FT /product="glycine cleavage system P protein" FT /EC_number="1.4.4.2" FT /note="Similar to Escherichia coli glycine dehydrogenase FT [decarboxylating] GcvP or B2903 SW:GCSP_ECOLI (P33195) (956 FT aa) fasta scores: E(): 2.2e-207, 58.254% id in 951 aa, and FT to Pseudomonas aeruginosa glycine cleavage system protein FT P2 GcvP2 or Pa2445 TR:Q9I137 (EMBL:AE004672) (959 aa) fasta FT scores: E(): 0, 66.422% id in 953 aa" FT /protein_id="CAE40576.1" FT /translation="MSRAPDTHSDFIPRHIGPSDEDQATMLVAIGAASLDALIDEVVPP FT RIRSRAPLALPAARSETDVLQDLKRIAARNQIYRNYIGQGYYGTHTPNVVLRNVLENPA FT WYTAYTPYQPEISQGRLEALLNYQTMVADLTGLDISNASLLDEGTAAAEAMTLARRGSR FT SSSPVFFVSQHCHPQTLEVVRTRAEGLGIELVIGDESRGLPECFGVLLQYPHSLGGVAD FT YRELAQAAHAQGAVVACVTDLLALALIEPPGQWGADIAVGSAQRFGVPFGFGGPHAGFM FT ACRDAYKRNMPGRLVGVSKDAQGNPALRLALQTREQHIRREKATSNICTAQVLLAVMAG FT LYAVWHGPRGVRRIAERVQSLTGALRAALAGLGVKVANDTWFDTLSLETGAATPAILAA FT ADCARINLRQVDGARLAVSLDETVTLADLQALVNVFAAGLGKDEVALAPPQASLDGIPA FT AVRRQGPILSHPVFSSVQSETDMLRYLRKLADKDLALDRTMIPLGSCTMKLNATAEMIP FT ITWPEFALIHPFAPASQTPGYRELIEGLSAQLCEITGYDGISLQPNSGAQGEYAGLLAI FT RAYHQANGQPQRNVCLIPASAHGTNPASAQLAGMDVVVVASDANGNVDLADLRARIAQV FT GERLAALMITYPSTHGVFEEAVTEICDAVHEAGGQVYLDGANMNAMVGVAQPGKFGSDV FT SHLNLHKTFCIPHGGGGPGVGPVAVRAHLAPYLPGVLDARGRLDPEAKVGPVSAAPYGS FT AGILPIPYVYIALMGAEGLRRATEVAILNANYIATRLRGHYPVLYAGRNGRVAHECILD FT VRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIA FT IRAEIAQVESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPP FT VARVDNAYGDRNLVCACLPVEAYA" FT misc_feature 199054..200322 FT /note="HMMPfam hit to PF02347, Glycine cleavage system FT P-protein" FT CDS complement(202027..202767) FT /transl_table=11 FT /locus_tag="BP0198" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Escherichia coli putative L-lactate FT dehydrogenase operon regulatory protein LldR or LctR or FT B3604 SW:LLDR_ECOLI (P33233) (258 aa) fasta scores: E(): FT 4.3e-12, 31.915% id in 235 aa, and to Streptomyces FT coelicolor putative GntR-family transcriptional regulator FT Scc24.13C TR:Q9L0A4 (EMBL:AL163003) (235 aa) fasta scores: FT E(): 4.3e-14, 34.222% id in 225 aa" FT /protein_id="CAE40577.1" FT /translation="MKTVETNPNPLGPIKAVRSRDLLADALREQILSGARPSGVALPSE FT RELTEETGLSRAAVRDALRVLESEGLIETRQGRYGGSVVKLPANDALARPVALFARARG FT ISLQEMIEARVAIEPTIAELAALRRTPEDLQALIQATDLLQEALPHVEQFLDLNVRWYF FT ALADACHNDLLRAFIVSIAGLILTATSREGQTPEPTRRLILQSHRRVVEAVIAGDAPAA FT RRRMERHVAGYQEHYERLGLTPSA" FT misc_feature complement(202516..202701) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(202576..202641) FT /note="Predicted helix-turn-helix motif with score 1063 FT (+2.81 SD) at aa 43-64, sequence PSERELTEETGLSRAAVRDALR" FT CDS 202837..204048 FT /transl_table=11 FT /locus_tag="BP0199" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti putative conserved FT membrane-anchored protein Smb21182 TR:CAC49248 FT (EMBL:AL603645) (394 aa) fasta scores: E(): 2e-56, 40.769% FT id in 390 aa, and to Sphingomonas aromaticivorans FT hypothetical 41.0 kDa protein TR:O86014 (EMBL:AF079317) FT (388 aa) fasta scores: E(): 8.9e-55, 41.732% id in 381 aa" FT /protein_id="CAE40578.1" FT /translation="MAAVSSSVPPTPLGGVRVLDLSKVLAGPLCTQYMADMGADVIKVE FT AAGQGDDTRGWPPFQDGQAAVFLSCNRNKRSIALDLKSAHGRAVVQRLAAWADVVVHSF FT GPGVAQKLGVDWEALSEINPRLVYCAISGFGPVGSLSHGKGFDVVLQAFCGMISITGET FT EGGAVRSPFSPVDQATGLHALIGILAALRQRDASGRGVTVDASLFDTALGFMGYFMQGY FT WARGTEPARAGAGHESLCPYQDFATADKPIILGIANDALWRAFCALAERPELASDPRFA FT TNAQRVANRAQTLAATRALLAARTRGEWLPALEQAGIPCSPIHTLVEVDAHPHTRESGM FT VFDYPETGTDAGPLKGVAQPVRFDGMRLTTPKRPPSLNQDWASVLADAGYSDPEVRDLL FT QQMA" FT misc_feature 203065..203631 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS 204077..205045 FT /transl_table=11 FT /locus_tag="BP0200" FT /product="putative exported protein" FT /note="Similar to Pseudomonas putida and Pseudomonas sp FT hypothetical 34.5 kDa protein in clcB-clcD intergenic FT region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta FT scores: E(): 1.3e-33, 36.246% id in 309 aa, and to FT Rhizobium meliloti conserved hypothetical protein Sma1927 FT TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): FT 1.8e-32, 34.663% id in 326 aa" FT /protein_id="CAE40579.1" FT /translation="MMNVLIRRALCAAIASLAAAAAHAAYPEQPVRIVVAFAPGSGTDN FT VARYYATRLSEELKQPFVVENKPGANGSIAATQVARTQPDGYTLFLGSNSTLSAAPFLF FT KKLPYEPLKDFTAVARLSDIPSMLVVGADSPIRDFDQFIGKARAEPGRVTWANANTAHL FT AAGMALTKQAQLDMISVPYKSSPQALTDVIGGQVTAMVVDTSAGTAFVQQGKVRALAVT FT TARPVAAMPGVPSMSERFPGIDVYSWLGIVGPAGMPDEVVTVVNKAILKINASEDTVRF FT LRENAGAEPPPSSSPAEFTQFMHAQLEVWRKLLRDANVEPM" FT misc_feature 204077..204148 FT /note="Signal peptide predicted for BP0200 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 24 and 25" FT CDS 205042..205560 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0201" FT /product="probable enoyl-CoA hydratase (Pseudogene)" FT /EC_number="4.2.1.17" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Escherichia coli probable FT enoyl-CoA hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) FT (262 aa) fasta scores: E(): 4.4e-14, 35.443% id in 158 aa, FT and to Azoarcus evansii putative enoyl-CoA hydratase PacA FT or PaaG TR:Q9ETY7 (EMBL:AJ278756) (273 aa) fasta scores: FT E(): 5.3e-14, 41.615% id in 161 aa" FT /db_xref="PSEUDO:CAE40580.1" FT misc_feature 205120..205557 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature 205381..205443 FT /note="ScanRegExp hit to PS00166, Enoyl-CoA FT hydratase/isomerase signature. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature join(205381..205449,205477..205545) FT /note="2 probable transmembrane helices predicted for FT BP0201 by TMHMM2.0 at aa 114-136 and 146-168" FT repeat_region 205557..205588 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 205557..206609 FT CDS 205659..206609 FT /transl_table=11 FT /locus_tag="BP0202" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40581.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 205917..205982 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 206040..206573 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(206578..206609) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(206604..206642) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0202A" FT /product="transposase (pseudogene)" FT /note="transposase fragment for IS1002" FT repeat_region complement(206604..206732) FT /note="Fragment of a IS1002 element" FT repeat_region 206704..206732 FT /note="Inverted repeat for IS481-like element" FT repeat_region complement(206707..206732) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(206729..207679) FT /transl_table=11 FT /locus_tag="BP0203" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40583.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 206729..206760 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(206729..207781) FT misc_feature complement(206765..207298) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(207356..207421) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(207750..207781) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(207794..208795) FT /transl_table=11 FT /locus_tag="BP0204" FT /product="putative restriction endonuclease" FT /note="Similar to Escherichia coli EcoVIII restriction FT endonuclease TR:Q46974 (EMBL:U48806) (333 aa) fasta scores: FT E(): 9.4e-22, 34.677% id in 248 aa, and to Haemophilus FT influenzae type II restriction enzyme HindIII or Hi1393 FT SW:T2D3_HAEIN (P43870) (300 aa) fasta scores: E(): 7.4e-20, FT 30.420% id in 286 aa" FT /protein_id="CAE40584.1" FT /translation="MPVARHGVGERVVQCPPMLTTSDPLPHPLPHPLLHDGVVAAVVRL FT CADATLDFPARCARLEAAIRACTRDQIIEHLQHGGVISECIGHDSSEEKLLAKYSDVLL FT ACALGELGFQARVLAERSDAADVYAECGDQRIVGDGKIFRLSRTALNPKDYKVPSLKKW FT RQGAGYSADYSVLLAPSFQYPLSRSQLYAQAIDNNVLLLSFEQLAFLVRHHQPGRDYRP FT LWEYAGTRAGQDTAAWKEARQYWHGLNQLVARLAGQTEQALRDSYAARRQLLQRQFDDE FT IAHWDAEAQRIRGLSREQAIAELLVSKKIQARVDLMRGAQRQLTLQLDDARA" FT CDS complement(208886..209452) FT /transl_table=11 FT /locus_tag="BP0205" FT /product="putative exported protein" FT /note="Similar to the C-terminal regions of Thermus FT thermophilus nusA/infB operon DNA TR:Q56428 (EMBL:Z48001) FT (275 aa) fasta scores: E(): 0.00019, 39.583% id in 96 aa, FT and to Pseudomonas aeruginosa hypothetical protein Pa4718 FT TR:Q9HV80 (EMBL:AE004885) (158 aa) fasta scores: E(): FT 0.00051, 33.962% id in 106 aa" FT /protein_id="CAE40585.1" FT /translation="MQLTIRKLAYTLAFSTLVLAGCTTASKKTDGQAATPADQASSQQA FT SAASVEFYVAQAKAGDGLMEVKVPDGSLYMQRQPVLTRADLTEAAALVDRQGQNFVGLR FT FTEAGARKLNDISSKNIGNMLALVIDRELVAAPRIAEPLNRGVLAFGVPSAKAASEIAA FT KIRGDAGAPAAGVPAAPAPKPAPKP" FT misc_feature complement(209372..209452) FT /note="Signal peptide predicted for BP0205 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.482 between residues 27 and 28" FT misc_feature complement(209387..209419) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 209771..211684 FT /transl_table=11 FT /gene="thiC" FT /locus_tag="BP0206" FT /product="thiamine biosynthesis protein" FT /note="Similar to Escherichia coli thiamine biosynthesis FT protein ThiC or B3994 SW:THIC_ECOLI (P30136) (631 aa) fasta FT scores: E(): 2.3e-150, 68.780% id in 631 aa, and to FT Neisseria meningitidis thiamine biosynthesis protein ThiC FT or Nmb2040 TR:Q9JXI0 (EMBL:AE002554) (633 aa) fasta scores: FT E(): 2.9e-180, 71.429% id in 630 aa" FT /protein_id="CAE40586.1" FT /translation="MNANPTFLAATAEVDAAAVAPLPKSRKVYETGSRPDIRVPFREIE FT QADTPTMFGGEKNPPLTVYDTSGPYTDPQASIDIRRGLPALRRAWIEERGDTEVLDGPT FT SDYGKERLTDPKLTAMRFDLQRPPRRARAGANVTQMHYARRGIVTPEMEFIALRENLRR FT EHYLETLRASGPDGEKLAKRLLRQHPGQSFGAALPSAITPEFVREEVARGRAIIPANIN FT HPEIEPMIIGRNFLVKINANIGNSAVSSGIGEEVEKMTWAIRWGGDTVMDLSTGKHIHE FT TREWIIRNSPVPIGTVPIYQALEKVDGKAEELTWEIFRDTLIEQAEQGVDYFTIHAGVR FT LPFIPMTADRMTGIVSRGGSIMAKWCLAHHKESFLYERFEEICEIMKAYDVSFSLGDGL FT RPGSGYDANDEAQFAELKTLGELTQVAWKHDVQVMIEGPGHVPMQMIKENMELQLKHCD FT EAPFYTLGPLTTDIAPGYDHITSGIGAALIGWYGTAMLCYVTPKEHLGLPNKKDVKDGI FT ITYKIAAHAADLAKGHPGAAIRDNALSKARFEFRWDDQFNLGLDPDTAKEFHDETLPKD FT SMKVAHFCSMCGPHFCSMKITQDVRDYAAAQGVSEKDALQQGMQEKAVEFVKKGAEVYH FT RT" FT misc_feature 210182..211573 FT /note="HMMPfam hit to PF01964, ThiC family" FT CDS complement(211726..213156) FT /transl_table=11 FT /locus_tag="BP0207" FT /product="putative aldehyde dehydrogenase" FT /note="Similar to Rhizobium meliloti putative aldehyde FT dehydrogenase Smb20891 TR:CAC49585 (EMBL:AL603646) (477 aa) FT fasta scores: E(): 5.1e-123, 68.697% id in 476 aa, and to FT Rhizobium loti aldehyde dehydrogenase Mlr5236 TR:Q98CA3 FT (EMBL:AP003006) (479 aa) fasta scores: E(): 1.8e-118, FT 67.230% id in 473 aa. Similar to several B. pertussis CDSs FT including BP0360 (44.025% identity in 477 aa overlap), FT BP2303, BP0757, BP1976." FT /protein_id="CAE40587.1" FT /translation="MHANFIDGAWLDGVDARPNINPSNLADVVGDYAQADAAQAGMAIA FT AASAAAHAWARSTGQRRADVLDAVGTELLARKEELGRLLSREEGKTLPEGVSEVTRAGH FT IFKFFAGEALRIQGEKLPMTRPGIEVDVTREPVGVVGIIAPWNFPIAIPAWKIAPALAY FT GNTVVFKPADLVPGSAWALAEILSRAGLPAGVFNLVMGRGSVVGQAILDDRRVNAISFT FT GSVATGRRVAEAAIGRMAKVQLEMGGKNPLVVLNDADLKVAVDCAVNGAFFSTGQRCTA FT SSRLIVQKGIYPRFVEAVRERLQGLKVDDALAPGTDIGPVVDRSQFDQNLAYIAIGREE FT GAQLAWGGEPLKRANEGYYLAPALFVDCDNSLRIAREEIFGPVAAVIPVDSYEQALEVA FT NDTEFGLSSGIVTTSLRHATHFKRESQAGMVMVNCPTAGVDYHVPFGGRKGSSYGPREQ FT GRHAAEFYTSVKTAYTAA" FT misc_feature complement(211729..213132) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature complement(212308..212343) FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature complement(212404..212427) FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT CDS complement(213269..214681) FT /transl_table=11 FT /locus_tag="BP0208" FT /product="putative oxidoreductase" FT /note="Similar to Rhizobium loti putative oxidoreductase FT Mlr7440 TR:Q986B0 (EMBL:AP003011) (476 aa) fasta scores: FT E(): 8.5e-78, 46.970% id in 462 aa, and to Rhizobium FT meliloti putative oxidoreductase protein Smc00985 FT TR:CAC45439 (EMBL:AL591785) (496 aa) fasta scores: E(): FT 1.5e-76, 44.255% id in 470 aa. Also similar to BP3139, FT 49.785% identity in 466 aa overlap." FT /protein_id="CAE40588.1" FT /translation="MSASEFSQRLTQALGADVVATSPADIEPWLSDWRGIYRGQAQAVV FT RPRTTDEVARCLALCQQAGVPVVPRGGNTGLCGGATPDAAQANVVLSLERMNAIRALDT FT VANTMVAEAGCILGNLRRAAQDANRLLPLSLAAEDSSQIGGNVATNAGGVNVVRYGMAR FT ELVLGLEAVLPNGEVLHGLRTLRKDNTGYDLKQLLIGSEGTLGVITAVALRLFPRADTR FT TVVLAAVESPRQALQLYELLFEQCGARLQAFEYFSGDCLDLVLTHVDGLHEPFAQRYPA FT YVLVELADTIDEAALNALVEEVIGAALERELCLDAAVSASLAQLQTLWRLREEISEAQR FT ADGPHLKHDVSLPIERIPEFMETAAARVRERYPDIRPFIFGHFGDGNLHYNLSRPAGAP FT REWAAEQGDAVTDLVLDEVLRYGGSISAEHGIGQLKRDHFLHSKDPLELRLMREIKRVL FT DPAGIMNPGKLL" FT misc_feature complement(214052..214660) FT /note="HMMPfam hit to PF01565, FAD binding domain" FT misc_feature complement(214385..214414) FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT CDS complement(214698..215393) FT /transl_table=11 FT /locus_tag="BP0209" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative GntR-family FT transcriptional regulator Sma0246 TR:AAK64788 FT (EMBL:AE007207) (233 aa) fasta scores: E(): 4e-20, 36.771% FT id in 223 aa, and to Rhizobium loti transcriptional FT regulator Mll8575 TR:Q982M5 (EMBL:AP003014) (247 aa) fasta FT scores: E(): 5.4e-19, 36.123% id in 227 aa" FT /protein_id="CAE40589.1" FT /translation="MLQPTPTLTDQVAGQLARAIADGAYAVGAKLPTGRALAQQYGVSA FT AVIREATERLRAQGLVQSRQGSGCTVVARTPAGGFQVPAGGLDRAHLARVYELRMELEG FT GAAALAARRRGAADLDRMRQALQALQREPIEPEQGVVHDVGFHVAIATATANPYYLQLL FT QYLNLQLRQAVETARANTRRQGDPVHAVHEEHLAIYRAIERGEPEAARAAAQHHLLGAA FT ARLQLDMNL" FT misc_feature complement(215181..215360) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT repeat_region 215510..215541 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 215510..216562 FT CDS 215612..216562 FT /transl_table=11 FT /locus_tag="BP0210" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40590.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS" FT misc_feature 215870..215935 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 215993..216526 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(216535..216562) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 216559..216590 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 216559..217611 FT CDS 216661..217611 FT /transl_table=11 FT /locus_tag="BP0211" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40591.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 216919..216984 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 217042..217575 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(217580..217611) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(217636..218535) FT /transl_table=11 FT /locus_tag="BP0212" FT /product="putative hydrolase" FT /note="Similar to Staphylococcus cohnii streptogramin B FT lactonase VgbB TR:O87275 (EMBL:AF015628) (295 aa) fasta FT scores: E(): 1.4e-42, 41.637% id in 281 aa, and to FT Streptomyces coelicolor putative hydrolase Scd6.27C FT TR:Q9KZX7 (EMBL:AL353815) (299 aa) fasta scores: E(): FT 3.6e-47, 46.875% id in 288 aa" FT /protein_id="CAE40592.1" FT /translation="MNQVEMTEFPVGKPEEALYGVASTPDGALWFTLAKGNAIGRLSPD FT GEVSRFPLPHADGQPTTITCGPDGRPWFTLSSANAVGRLSPDGALRMFELPRPASRPFG FT IAAGHDGCLWFAEMAGDRIGRITIDGDIEEYDLPVKGGYPSCMAAGRDGLMWFTLNQAG FT AIGSISATAAPRIFPLGAADAAPVGIASDAQGALWIAQAGNGAIARFDAGGRITEFPLH FT SRAARPHALAADAAGNLWFTEWGANRIGRISEAGDTAGYELAAPGSEPHGIAIDPHGCV FT WAALETGSLVRLQASPRD" FT CDS 218690..219238 FT /transl_table=11 FT /locus_tag="BP0213" FT /product="putative acetyltransferase" FT /note="Similar to Alcaligenes faecalis phosphinothricin FT N-acetyltransferase Pat SW:PAT_ALCFA (P31668) (197 aa) FT fasta scores: E(): 1.4e-35, 59.884% id in 172 aa, and to FT Caulobacter crescentus phosphinothricin N-acetyltransferase FT Cc0935 TR:Q9A9P1 (EMBL:AE005770) (180 aa) fasta scores: FT E(): 3.6e-32, 53.757% id in 173 aa" FT /protein_id="CAE40593.1" FT /translation="MTASTPTAILIRDSRDADLPAIAAIYAHHVLHGTASFELEPPGLE FT ALRERRAAVLAHGLPYLAAECGGEIVGYAYATPYRPRPAYRHTVEDSVYVRAGHAGQGI FT GGKLLAALIDRCAAGGWRQMLAVVGDSANTASVALHARHGFDTIGTFRSVGYKHGQWRD FT TVLMQRALGEGDATPPSRP" FT misc_feature 218873..219127 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT CDS complement(219277..219996) FT /transl_table=11 FT /locus_tag="BP0214" FT /product="Conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus ExsB protein FT Cc3160 TR:Q9A3P2 (EMBL:AE005980) (242 aa) fasta scores: FT E(): 2.7e-64, 63.983% id in 236 aa, and to Rhizobium loti FT Mll5936 protein TR:Q98AM3 (EMBL:AP003007) (245 aa) fasta FT scores: E(): 8.9e-59, 60.606% id in 231 aa" FT /protein_id="CAE40594.1" FT /translation="MQNHQRRALVLFSGGQDSTTCLAWALERYAHVETLGFDYGQRHRV FT ELDARQVVLRELRANFPDWAQRLGDDHLLDLGILAQVGDTAMTSDREIEMQANGLPNTF FT VPGRNLLFLTLAAALGYRRQLDVLVGGMCETDFSGYPDCRDDTIKSQQVTLGLGLGTRV FT TIETPLMWLDKAQTWELADRLGGQALVDMVIEHSHTCYLGERGQRHDWGYGCGHCPACA FT LRKNGWERWVAGAAHAD" FT CDS 220068..223010 FT /transl_table=11 FT /gene="ppc" FT /locus_tag="BP0215" FT /product="phosphoenolpyruvate carboxylase" FT /EC_number="4.1.1.31" FT /note="Similar to Corynebacterium crenatum FT phosphoenolpyruvate carboxylase Ppc TR:AAK92540 FT (EMBL:AF406314) (919 aa) fasta scores: E(): 1.2e-95, FT 41.587% id in 945 aa, and to Corynebacterium glutamicum FT phosphoenolpyruvate carboxylase Ppc SW:CAPP_CORGL (P12880) FT (918 aa) fasta scores: E(): 5.4e-95, 41.288% id in 947 aa" FT /protein_id="CAE40595.1" FT /translation="MAAYNAPVSNCQFRLTHILPIPQRHGAPTDPFQMNAIRQQSDSAE FT PLRHDIRLLGRCLGEVIQACEGKRVYDTIETLRRTAVRFRRAGDPADDKLLQARVKQLR FT GNDPNSVARAFSYFLHLSNIAEDRDQNRRQRERALAGAGPERGSLRQAIESLKAQGVNN FT ARIRRLLSEACVMPVLTAHPTEVQRKSTLDVHREISSLLVQRERELTADELSELDLALI FT GQVATLWQTRMLRYTRLTVADEIENALSYYRSTFLNVIPRVYGDLARLLNREPVKPFTP FT PPPPLEPFLRMGSWIGGDRDGNPNVDAATLERALLRQATVLFEHYLQEVHALGAELSAS FT TLLIEADPALLALADAGGDDSPHRRDEPYRRALIGIYARLAATARHLTGQKLARRATVP FT AAPYDTPDALAADLAVIAASLSARHGAPIARLRLSGLQQAVTVFGFHLATVDLRQSSDV FT HERVLAELFARAGDGIDGQAVDYLALDEAARVAGRELAHARPLASPWIAYSEETASELA FT VLRAAAAGRARYGRQAVLQSIVSHTETLSDLLEVLVLQKEAGLIAPPGETIAPGDGLMV FT VPLFETIPDLQRGPEIMAAWLDLPEVRQRVRLAQGDTQEVMLGYSDSNKDGGFLTSNWS FT LYQAERALVDVFSARSVRLRMFHGRGDSVGRGGGSSYDAILAQPPGTVAGQLRLTEQGE FT VIQSKYKDAEVGRWHLELLVAATLESSLAPQAAATSAEDAHMQQHAPAMSFMSELAQRT FT YRGLVYDTPGFADYFFAATPISEIAGLNIGSRPASRKKGQHIEDLRAIPWGFSWAQCRL FT MLTGWYGMGSAIEAYLETGAQGAPRSRRARLAQLREMASDWPAFRTLLSNMEMVLAKSD FT LAIAAGYAQLVPRRGLRERVFGAITAEHGRTLAMLRLLTRRDLLADNPGLMASLRERFA FT YIDPLNYLQIELIKRHRAAQRRAGDDADIRVPRAIHLTINGIAAGLRNSG" FT misc_feature 220398..220985 FT /note="HMMPfam hit to PF00311, Phosphoenolpyruvate FT carboxylase" FT misc_feature 220599..220634 FT /note="ScanRegExp hit to PS00781, Phosphoenolpyruvate FT carboxylase active site 1. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 221679..222908 FT /note="HMMPfam hit to PF00311, Phosphoenolpyruvate FT carboxylase" FT misc_feature 221913..221951 FT /note="ScanRegExp hit to PS00393, Phosphoenolpyruvate FT carboxylase active site 2. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 223601..226399 FT /transl_table=11 FT /gene="sphB1" FT /locus_tag="BP0216" FT /product="autotransporter subtilisin-like protease" FT /note="Previously sequenced as Bordetella pertussis FT autotransporter subtilisin-like protease SphB1 TR:CAC44081 FT (EMBL:AJ318229) (1039 aa) fasta scores: E(): 0, 100.000% id FT in 932 aa, and dimilar to Xylella fastidiosa serine FT protease Xf1026 TR:Q9PEK2 (EMBL:AE003939) (905 aa) fasta FT scores: E(): 1.1e-45, 31.919% id in 943 aa" FT /protein_id="CAE40596.1" FT /translation="MMPPPAVPPQLPEVPAADLPRVRAPLSTYRRPQRTDFVTPTGGPF FT FAKQDKALNTIDLKMAHDLKLRGYRVKVAVVDEGVRSDHPLLNVEKKYGGDYMADGTRT FT YPDPKRQGRHGTSVALVLAGQDTDTYRGGVAPNADLYSANIGTRAGHVSDEAAFHAWND FT LLGHGIKIFNNSFATEGPEGEQRVKEDRNEYHSAANKQNTYIGRLDRLVRDGALLIFAA FT GNGRPSGRAYSEVGSVGRTPRVEPHLQRGLIVVTAVDENGRLETWANRCGQAQQWCLAA FT PSTAYLPGLDKDNPDSIHVEQGTSLSAPLVTGAAVLVQDRFRWMDNDNLRTTLLTTAQD FT KGPYGVDPQYGWGVLDVGRAVQGPAQFAFGDFVARVTDTSTFGNDISGAGGLVVDGPGA FT LVLAGSNTYAGRTTIKRGTLDVFGSVTSAVTVEPGGTLTGIGTVGTVTNQGTVVNKEAG FT LHVKGDYSQTAQGLLVTDIGSLLDVSGRASLAGRLHVDDIRPGYVGGDGKSVPVIKAGA FT VSGVFATLTRSPGLLLNARLDYRPQAVYLTMRRAERVHAAAQRGADDGRRASVLAVAER FT LDAAMRELDALPESQRDAAAPAAAIGRIQRVQSRKVLQDNLYSLAGATYANAAAVNTLE FT QNRWMDRLENHLAQAGGERVAAIAEYRHGQLRWRPDGLQGRQRGNGIMLGLAREVSAGL FT SLAAALTHSRTHWDESSGAPARDNAAMTTPGVLLGARRAWEDGWFVQGALGYSRYRNQA FT TRHISLGDAGHTVGATARGHVWQADAGLGRQWTLAPGHTLAPRAGLQLTHLRQQGFSES FT GAQGLGLRAHALTRTVPTLWAQLQSRHAFMLGATPMTAQLQLGVWHDLRARRYAASGGF FT AGLAQDQGASGYWPVPRTRVQGALGLRAEFAPGLVLGLGYTGQLATHWVDHQLSASLTY FT RY" FT misc_feature 223811..224023 FT /note="HMMPfam hit to PF00082, Subtilase family" FT misc_feature 224507..224539 FT /note="ScanRegExp hit to PS00138, Serine proteases, FT subtilase family, serine active site." FT misc_feature 224507..224686 FT /note="HMMPfam hit to PF00082, Subtilase family" FT misc_feature 225626..225682 FT /note="ScanRegExp hit to PS00095, C-5 cytosine-specific DNA FT methylases C-terminal signature." FT CDS 226857..227789 FT /transl_table=11 FT /locus_tag="BP0217" FT /product="3-hydroxybutyryl-CoA dehydrogenase" FT /EC_number="1.1.1.157" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydrogenase Hbd or Cac2708 FT SW:HBD_CLOAB (P52041) (282 aa) fasta scores: E(): 7.6e-33, FT 42.199% id in 282 aa, and to Rhizobium loti FT 3-hydroxybutyryl-CoA dehydrogenase Mlr6793 TR:Q988C8 FT (EMBL:AP003010) (309 aa) fasta scores: E(): 3.7e-37, FT 36.452% id in 310 aa" FT /protein_id="CAE40597.1" FT /translation="MDNPIQNLAVVGAGAMGSGIAALFASKGFDVVLIDPMEGALTRAA FT QVIERQLGVYAPDAIAPAMQRIRMDAGLEAACSAQLVIEAVPEKLALKRDIFARLDTLC FT DPQAIFATNTSGLSINDIAQAVTRRDRFVGTHFFTPADVIPLVEVVRNDDTSEQTVARV FT MDMLRAGGKRPVLVRKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIR FT LALSGPLEQRDMNGIDVHYAIASYLYQDLENRTTPSELLENKVQAGELGAKSGQGFYAW FT PPERRERVLRDKSAALAELAAWLENRKPV" FT misc_feature 226878..227699 FT /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain" FT CDS 227901..229250 FT /transl_table=11 FT /locus_tag="BP0218" FT /product="short-chain fatty acids transporter" FT /note="Similar to Escherichia coli short-chain fatty acids FT transporter AtoE or B2223 SW:ATOE_ECOLI (P76460) (440 aa) FT fasta scores: E(): 1.4e-62, 39.636% id in 439 aa, and to FT Alcaligenes eutrophus hypothetical 47.8 kDa protein FT TR:Q9F189 (EMBL:AF042280) (446 aa) fasta scores: E(): FT 1.5e-125, 75.281% id in 445 aa. Also similar to BP0404, FT 44.988% identity (46.283% ungapped) in 429 aa overlap." FT /protein_id="CAE40598.1" FT /translation="MNKLTSFFTELMRKYLPDPFVFAIALTLLTVLMAFGIEGQPLDQI FT TREWGKGFWSLLAFTTQMAVILAMGYVLATAPLTDRLLDRIVSHVHQPRTAIIVATLVG FT GVGSYLNWGFGLVIGGVVAKKLALKVKGVHYPLIIAAAYSGFTMYGLGLSASIPVLVTT FT PGHPTADQMGVIPLSETIFSLPMLITSLVIIVTLPLLNAWLHPKQGEQVVEVDPAIDQS FT SAPAKTADELTAEDTLASRLNNSRILSLLIGLLGIAYVVFYFMDGKSLDLNLINFIILF FT LGIILLGTPAAYVAKLNEGIKTISGIILQYPFYAGIMAIMAIMAGSGLVATISKVFVDV FT ASPGSLPFWGLISSFVINFFAPSAGGHWVIQGPFMIDAAKEIGSALNQTTMAVMLGNAW FT NDLVQPFWILPALALSKLKLRDVMGYTVIMMLWVGVIHIAAVLAWGYLTH" FT misc_feature 227901..228008 FT /note="Signal peptide predicted for BP0218 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.941) with cleavage site FT probability 0.635 between residues 36 and 37" FT misc_feature 227901..229232 FT /note="HMMPfam hit to PF02667, Short chain fatty acid FT transporter" FT misc_feature join(227958..228017,228054..228122,228186..228254, FT 228315..228383,228441..228509,228639..228695, FT 228723..228782,228831..228899,228942..229010, FT 229173..229241) FT /note="10 probable transmembrane helices predicted for FT BP0218 by TMHMM2.0 at aa 20-39, 52-74, 96-118, 139-161, FT 181-203, 247-265, 275-294, 311-333, 348-370 and 425-447" FT CDS 229282..230007 FT /transl_table=11 FT /locus_tag="BP0219" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable FT short-chain dehydrogenase Pa4162 TR:Q9HWL9 (EMBL:AE004832) FT (238 aa) fasta scores: E(): 3.1e-29, 45.887% id in 231 aa, FT and to Streptomyces coelicolor putative short chain FT oxidoreductase 2 Scg61.28C TR:Q9K3Y7 (EMBL:AL359949) (253 FT aa) fasta scores: E(): 1.8e-20, 42.324% id in 241 aa. FT Similar to BP3244 (49.153% identity in 236 aa overlap) and FT to BP1222 (44.726% identity in 237 aa overlap" FT /protein_id="CAE40599.1" FT /translation="MKPTAYLVTGASSGISAAIARALLDAGHRVVNIDYRLPADAPQGL FT ASYQADLTDEAQTLAVAREVTEAYDIVGLVNNAGATRPGTADTATLADLDYVVALHLRT FT AMILVQAALPAMRAAGYGRIVNMSSRAALGKPERVVYSATKAGLIGLTRTLAMELGGDG FT ITVNAIGPGPIATELFRNSNPEGAPRTQRIIDSIVVKRLGTPEDVARAAMFFLSPDNGF FT VTGQVLYVCGGTTLGVAPV" FT misc_feature 229282..229341 FT /note="Signal peptide predicted for BP0219 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.931) with cleavage site FT probability 0.543 between residues 20 and 21" FT misc_feature 229291..229812 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 229663..229749 FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT misc_feature 229879..229971 FT /note="HMMPfam hit to PF00678," FT CDS complement(230058..230909) FT /transl_table=11 FT /locus_tag="BP0220" FT /product="probable transcriptional regulator" FT /note="Similar to Rhodococcus opacus PcaR TR:O67983 FT (EMBL:AF003947) (265 aa) fasta scores: E(): 1.2e-41, FT 50.602% id in 249 aa, and to Rhizobium meliloti putative FT transcriptional regulator, IclR family protein Smb20586 FT TR:CAC49898 (EMBL:AL603647) (251 aa) fasta scores: E(): FT 2.2e-39, 48.780% id in 246 aa" FT /protein_id="CAE40600.1" FT /translation="MASRLYNGARSERLHFHLLHTGSMVEQVPQQPGVSYVQSFARGLS FT VIRAFGPQRPQMTLSEVAAATGLTRAGARRILLTLASLGYVAQEDRRFTLTPRILELGY FT AYLSATPLWDLALPYMEEVAETTRESCSVSVLDGVDIVYILRLSTHKVMTINLAVGSRL FT PAWVTSMGRVLLAGLPEAEQDRLLDESQIQPYTPATVVDRAELKRILAGVRADGYACVV FT QELEPGLQSVAVPIVDRGGRVIGAMNVSGHANRYSREEMLQAFLPPLRSAAEHINQALR FT RR" FT misc_feature complement(230073..230633) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT misc_feature complement(230676..230741) FT /note="Predicted helix-turn-helix motif with score 1256 FT (+3.46 SD) at aa 57-78, sequence MTLSEVAAATGLTRAGARRILL" FT CDS 231039..231725 FT /transl_table=11 FT /gene="catI" FT /gene_synonym="pcaI" FT /locus_tag="BP0221" FT /product="3-oxoadipate CoA-transferase subunit A" FT /EC_number="2.8.3.6" FT /note="Similar to Pseudomonas putida 3-oxoadipate FT CoA-transferase subunit A PcaI SW:PCAI_PSEPU (Q01103) (231 FT aa) fasta scores: E(): 3.6e-59, 71.689% id in 219 aa, and FT to Acinetobacter calcoaceticus 3-oxoadipate CoA-transferase FT subunit A PcaI and CatI SW:PCAI_ACICA (Q43973) (228 aa) FT fasta scores: E(): 7.8e-54, 65.929% id in 226 aa. Also FT similar to BP1788 (50.228% identity in 219 aa overlap), and FT to BP2401 (48.684% identity in 228 aa overlap)." FT /protein_id="CAE40601.1" FT /translation="MISKLVATAADALADVPDGATVMIGGFGTAGQPMELIDALLEQGA FT KDLVIINNNAGNGTTGLAALLGAGRVRKIICSFPRQVDSQIFDGLYRAGKLELELVPQG FT NLAERIRAAGAGIGAFFTPTGYGTPLADGKETREINGRQYVLEYPLHADYALIQAERGD FT RWGNLVYRKTARNFGPIMASAARVAVAQVRQVVELGQLDPEAVVTPGIFVKRVVQIDAP FT RGAKEQ" FT misc_feature 231048..231698 FT /note="HMMPfam hit to PF01144, Coenzyme A transferase" FT misc_feature 231090..231137 FT /note="ScanRegExp hit to PS01273, Coenzyme A transferases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT CDS 231725..232369 FT /transl_table=11 FT /gene="catJ" FT /gene_synonym="pcaJ" FT /locus_tag="BP0222" FT /product="3-oxoadipate CoA-transferase subunit B" FT /EC_number="2.8.3.6" FT /note="Similar to Pseudomonas putida 3-oxoadipate FT CoA-transferase subunit B PcaJ SW:PCAJ_PSEPU (Q01104) (212 FT aa) fasta scores: E(): 1.9e-53, 66.190% id in 210 aa, and FT to Acinetobacter calcoaceticus 3-oxoadipate CoA-transferase FT subunit B PcaJ and CatJ SW:PCAJ_ACICA (Q59091) (218 aa) FT fasta scores: E(): 4.1e-50, 62.981% id in 208 aa. Also FT similar to BP1789 (50.472% identity in 212 aa overlap), and FT to BP2400 (49.268% identity in 205 aa overlap)." FT /protein_id="CAE40602.1" FT /translation="MSSKLTRDEIAARVAQDIPEGAYVNLGIGLPTLVANHLPADREVI FT LHTENGMLGMGPAPAKGQEDYDLINAGKQPVTELPGCSFFHHADSFAMMRGGHLDICVL FT GAFQVSQQGDLANWHTGAPDAIPAVGGAMDLAIGAKDVFVMMELQTRDGQSKLVQACTY FT PLTGVRCVSRVYTDMAVFDLRAGQITVTDLFGDTTREQLLALTGLPLKFAD" FT misc_feature 231740..232342 FT /note="HMMPfam hit to PF01144, Coenzyme A transferase" FT CDS 232426..232701 FT /transl_table=11 FT /gene="catC2" FT /gene_synonym="mmlJ" FT /locus_tag="BP0223" FT /product="methylmuconolactone isomerase" FT /EC_number="5.3.3.4" FT /note="Similar to Alcaligenes eutrophus methylmuconolactone FT isomerase MmlJ TR:O51800 (EMBL:X99639) (91 aa) fasta FT scores: E(): 5.3e-23, 63.736% id in 91 aa, and to FT Acinetobacter lwoffii muconolactone delta-isomerase 2 CatC2 FT SW:CTC2_ACILW (O33951) (96 aa) fasta scores: E(): 1.7e-22, FT 63.736% id in 91 aa" FT /protein_id="CAE40603.1" FT /translation="MLFMVQMQVNLPPDMPAERADKLKADEKALAQQMQRDGKWRHLWR FT VAGRYANVSIFDAADNDELHQMLSALPLFPYMDIQVTALARHPSAI" FT misc_feature 232426..232698 FT /note="HMMPfam hit to PF02426, Muconolactone FT delta-isomerase" FT CDS 232727..233023 FT /transl_table=11 FT /locus_tag="BP0224" FT /product="conserved hypothetical protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 11.0 FT kDa protein TR:Q9F188 (EMBL:AF042280) (98 aa) fasta scores: FT E(): 6.7e-25, 65.306% id in 98 aa, and to Caulobacter FT crescentus hypothetical protein Cc0069 TR:Q9AC00 FT (EMBL:AE005681) (93 aa) fasta scores: E(): 2.7e-08, 45.122% FT id in 82 aa" FT /protein_id="CAE40604.1" FT /translation="MPYIIETFDKPGSLAVRQQHRNAHLQFLDQHKHLLLACGAKLDDD FT GKDLGGGLYVVDVDTRAAAEQFIQADPFHLAGLFERVAITRWRKAYVDGTSYL" FT CDS 233069..233848 FT /transl_table=11 FT /gene="catD2" FT /locus_tag="BP0225" FT /product="3-oxoadipate enol-lactone hydrolase" FT /EC_number="3.1.1.24" FT /note="Similar to Alcaligenes eutrophus 3-oxoadipate FT enol-lactone hydrolase CatD2 TR:Q9EV45 (EMBL:AF042280) (259 FT aa) fasta scores: E(): 4.2e-56, 58.915% id in 258 aa, and FT to Pseudomonas putida PcaD-like protein TR:Q9WWZ4 FT (EMBL:AF031417) (228 aa) fasta scores: E(): 1.1e-35, FT 45.778% id in 225 aa" FT /protein_id="CAE40605.1" FT /translation="MSYADLSQARLYYVIDGPADAPVLVLSNSLGTCADMWARQIPELS FT RRFRVLRYDTRGHGKSSVPDGEYSFAQLGGDVAELLEHLRIERAHFCGLSMGGPTGMWL FT ALERPELIDRLVLCNTAARIGSAEGWSARIAAVRQDGLETMAPGLVERWLTPQYRAAEP FT GLVQVLVDMLRRIPDAGYMANCAALRDADLRERVAAIRARTLVISSTHDLAATPQDGKA FT LAAAIPGARYVELDTSHISNWEQPEAFTRALTGFLTE" FT misc_feature 233210..233839 FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT CDS 233845..234894 FT /transl_table=11 FT /locus_tag="BP0226" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical 34.1 FT kDa protein Scif3.09C TR:CAC37528 (EMBL:AL590982) (320 aa) FT fasta scores: E(): 1e-08, 33.529% id in 340 aa" FT /protein_id="CAE40606.1" FT /translation="MNGMQRWKQRPPGSNWGDFGPDDQLGRLNLITPAEVLKAAQEIRA FT GRSFCLSLPLDLPGGNVLNPRRHPPQLSPTRLQDTPYVNFPLRNINPDAVDVLSDDQVL FT LSMQYSTQWDSLAHVGALFDADGDGRAELCYYNGYRAGIDIVGPADADHAGCGCNTGGP FT SSALKLGIENLAQHSVQGRGVLLDLARHYGAGRTLVGYKELTQALAADGIEIESGDMLV FT LRTGYAKAVVGMNGKPDADVLHQYGAALDGTDAELLQWITDSGIAAICADNYAVEAYPA FT RERQGPRAMLPLHHHCLFKLGLPLAELWYLKDLAEWLHANGRHRFMLTAPPLRLPHAIG FT SPVTPVATV" FT CDS complement(234999..235322) FT /transl_table=11 FT /gene="psiF" FT /locus_tag="BP0227" FT /product="phosphate starvation-inducible protein precursor" FT /note="Similar to Escherichia coli phosphate FT starvation-inducible protein PsiF precursor or B0384 FT SW:PSIF_ECOLI (P27295) (106 aa) fasta scores: E(): 0.00082, FT 51.220% id in 82 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa4874 TR:Q9HUT9 (EMBL:AE004901) (138 FT aa) fasta scores: E(): 2.9e-11, 50.562% id in 89 aa" FT /protein_id="CAE40607.1" FT /translation="MISRVSKFAACTLVSLFCSTAAWAQASASKELTPQQKRMAECNKS FT ATGKTGDERKAYMSSCLKGEEPANKLTPQQQRMKDCNSRASEQALTGKKRKAYMSTCLS FT GKS" FT misc_feature complement(235251..235322) FT /note="Signal peptide predicted for BP0227 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.992 between residues 24 and 25" FT CDS complement(235479..236429) FT /transl_table=11 FT /locus_tag="BP0228" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40608.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 235479..235510 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(235479..236531) FT misc_feature complement(235515..236048) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(236106..236171) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(236500..236531) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(236528..237325) FT /transl_table=11 FT /locus_tag="BP0229" FT /product="beta-D-hydroxybutyrate dehydrogenase" FT /EC_number="1.1.1.30" FT /note="Similar to Pseudomonas putida beta-D-hydroxybutyrate FT dehydrogenase BdhA TR:Q9AE70 (EMBL:AJ310211) (256 aa) fasta FT scores: E(): 1.6e-35, 45.349% id in 258 aa, and to FT Pseudomonas SpGM101 beta-hydroxybutyrate dehydrogenase HbdH FT TR:Q9KH52 (EMBL:AF271714) (255 aa) fasta scores: E(): FT 2.1e-35, 45.736% id in 258 aa" FT /protein_id="CAE40609.1" FT /translation="MNPARPLHGRCALITGAEAGLGLAIADTLARSGADIVMHCLQANE FT SARQAQAALAREHGVRVLLLQADLRDVDQIEAMAAQALAELPRLDILVNNAVVRHFEPA FT HELPRAHWDESLAVNLSAAFHLARLALPGMLAQGWGRIINLSSVYGAGAAANRVGYVTT FT KTALLGLTRALAVETAASGITSNAVAPGTAPTPAIVGRITEIARRDGVAQEQAEREYLA FT ARQPTGRFVAMENVAALVAFLCSDAGRDITGATLPIDGGWTAA" FT misc_feature complement(236552..236644) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(236738..237298) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature complement(236801..236887) FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT CDS complement(join(237322..237579,237581..238258)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0230" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 226. The sequence has been checked FT and believed to be correct. Similar to Archaeoglobus FT fulgidus hypothetical 29.0 kDa protein Af1509 TR:O28763 FT (EMBL:AE000998) (262 aa) fasta scores: E(): 3.4e-06, FT 30.290% id in 241 aa, and to Deinococcus radiodurans FT conserved hypothetical protein Dr1823 TR:Q9RTE2 FT (EMBL:AE002022) (253 aa) fasta scores: E(): 0.00019, FT 30.043% id in 233 aa" FT /db_xref="PSEUDO:CAE40610.1" FT misc_feature complement(join(237433..237579,237581..238045)) FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily" FT variation complement(237581..237582) FT /note="GG in pertussis; GG(GT) in parapertussis" FT misc_feature complement(237965..237997) FT /note="ScanRegExp hit to PS00136, Serine proteases, FT subtilase family, aspartic acid active site." FT CDS 238275..238685 FT /transl_table=11 FT /gene="pcaC" FT /locus_tag="BP0231" FT /product="4-carboxymuconolactone decarboxylase" FT /EC_number="4.1.1.44" FT /note="Similar to Acinetobacter calcoaceticus FT 4-carboxymuconolactone decarboxylase PcaC SW:DC4C_ACICA FT (P20370) (134 aa) fasta scores: E(): 1.2e-19, 43.333% id in FT 120 aa, and to Pseudomonas putida PcaC-like protein FT TR:Q9WWZ5 (EMBL:AF031417) (130 aa) fasta scores: E(): FT 2.7e-24, 55.556% id in 108 aa" FT /protein_id="CAE40611.1" FT /translation="MALRPEFQTEQFQKGLAVRRAVVGDAYVDKSLNSADDLTASLQKL FT VTEYCWGEVWTRPGLERKTRSFLNLAMLIALNRPNELRLHLRGAINNGVTKDEIVEVVL FT QAAIYCGVPAALDAMKAVREVVETMEKEGAFA" FT misc_feature 238386..238646 FT /note="HMMPfam hit to PF02627, Carboxymuconolactone FT decarboxylase" FT CDS join(238740..238847,238851..239690) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0232" FT /product="probable oxidoreductase (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAA stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Escherichia coli FT 2-hydroxy-3-oxopropionate reductase GarR or B3125 FT SW:GARR_ECOLI (P23523) (294 aa) fasta scores: E(): 5.1e-26, FT 34.164% id in 281 aa, and to Salmonella typhimurium FT hypothetical oxidoreductase YihU TR:Q9L7S0 (EMBL:AF220438) FT (298 aa) fasta scores: E(): 9.7e-45, 47.751% id in 289 aa" FT /db_xref="PSEUDO:CAE40612.1" FT misc_feature 238761..238802 FT /note="ScanRegExp hit to PS00895, 3-hydroxyisobutyrate FT dehydrogenase signature. Confirmed by InterPro eMOTIF FT pattern match." FT variation 238848..238850 FT /note="TAA stop codon in pertussis; CAA in parapertussis" FT misc_feature 239319..239342 FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT CDS complement(239707..240450) FT /transl_table=11 FT /locus_tag="BP0233" FT /product="GntR family transcriptional regulator" FT /note="Similar to Rhizobium loti transcriptional regulator FT Mll6786 TR:Q988D5 (EMBL:AP003010) (223 aa) fasta scores: FT E(): 8.7e-21, 40.196% id in 204 aa, and to Deinococcus FT radiodurans transcriptional regulator, GntR family Dr0815 FT TR:Q9RW54 (EMBL:AE001936) (267 aa) fasta scores: E(): FT 2e-17, 38.839% id in 224 aa" FT /protein_id="CAE40613.1" FT /translation="MPFPFCNTNRMTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVG FT RFRPGERLPERELCEMTGVSRTLVREALRQLESEGLIVVIPHRGPVVERLSPEQARGIY FT QVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQLLDG FT AGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSL FT HVRNAASVAIAILQDSLADAAATAE" FT misc_feature complement(240175..240351) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(240229..240294) FT /note="Predicted helix-turn-helix motif with score 1104 FT (+2.95 SD) at aa 53-74, sequence LPERELCEMTGVSRTLVREALR" FT CDS complement(240494..241537) FT /transl_table=11 FT /locus_tag="BP0234" FT /product="putative solute-binding periplasmic protein" FT /note="Similar to Rhodobacter capsulatus FT C4-dicarboxylate-binding periplasmic protein precursor DctP FT SW:DCTP_RHOCA (P37735) (333 aa) fasta scores: E(): 1.5e-08, FT 24.074% id in 324 aa, and to Rhizobium meliloti putative FT ABC transporter periplasmic solute-binding protein Smb20036 FT TR:CAC48439 (EMBL:AL603642) (338 aa) fasta scores: E(): FT 3.2e-09, 25.237% id in 317 aa" FT /protein_id="CAE40614.1" FT /translation="MSQRFPLPRGFQAALAAAALCTASWSGAAAAQTYDLTMAVITSPG FT DGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQIATAVREGRVDMSAALHTYLAADE FT PRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSKDPI FT HKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSL FT EFWRIAKNVQNWSLGPINGWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFV FT SNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWNKRAKQVGFDGPAYLDRVRTT FT LGKSASN" FT misc_feature complement(241445..241537) FT /note="Signal peptide predicted for BP0234 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.903 between residues 31 and 32" FT CDS 241708..243810 FT /transl_table=11 FT /locus_tag="BP0235" FT /product="putative membrane protein" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm1708 TR:Q9CKB6 (EMBL:AE006207) (634 aa) fasta FT scores: E(): 7e-37, 27.192% id in 673 aa, and to FT Haemophilus influenzae hypothetical protein Hi0147 FT SW:Y147_HAEIN (P44543) (633 aa) fasta scores: E(): 4.2e-36, FT 27.769% id in 641 aa" FT /protein_id="CAE40615.1" FT /translation="MSSIEMPAPVMPIEPAELAGASPYPLAIDQDFCLIRWMAAISRAC FT GALATVALLLMALSMCYEIFSRYLFNAPTAWATEISGYLLVATVFFGLAAAQASNSHVQ FT VELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTPQWM FT PELAVSVGMVVFCMSILVDIYRLSPPAQAWRRWLTPALLALLAAALVALGANAVPMAAG FT GRFDWGMALIVAALLACAWAWSGVRTLAHVVLVVGGCAVLYGLARGQSLGWVAFLLVAS FT MMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERAWSSTNTFTLTAVPMFIFMGG FT LLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDM FT IERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACF FT MLGALVWALAVPGSAPVARAYTLREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAA FT IGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAGIFSWVFDYLRLPREVV FT NLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFL FT VLMIELGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMW FT LPQQVK" FT misc_feature join(241837..241905,241933..242001,242059..242127, FT 242203..242271,242305..242373,242386..242439, FT 242452..242520,242563..242631,242668..242736, FT 242806..242874,242935..243003,243046..243114, FT 243175..243243,243349..243405,243466..243534, FT 243592..243660,243721..243789) FT /note="17 probable transmembrane helices predicted for FT BP0235 by TMHMM2.0 at aa 44-66, 76-98, 118-140, 166-188, FT 200-222, 227-244, 249-271, 286-308, 321-343, 367-389, FT 410-432, 447-469, 490-512, 548-566, 587-609, 629-651 and FT 672-694" FT CDS join(243807..244331,244331..245194) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0236" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 175. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa hypothetical protein Pa0881 TR:Q9I564 FT (EMBL:AE004522) (450 aa) fasta scores: E(): 6.3e-26, FT 30.752% id in 452 aa, and to Methanothermobacter FT thermautotrophicus conserved protein Mth965 TR:O27046 FT (EMBL:AE000870) (452 aa) fasta scores: E(): 6.3e-22, FT 28.285% id in 449 aa" FT /db_xref="PSEUDO:CAE40616.1" FT variation 244331..244333 FT /note="GCC in pertusssis; G(CTGGGCG)CC in parapertussis" FT misc_feature 244439..244483 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 245221..246177 FT /transl_table=11 FT /locus_tag="BP0237" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus 2,4-diphenoxyacetic FT acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta FT scores: E(): 5.4e-37, 39.048% id in 315 aa, and to FT Rhizobium meliloti conserved hypothetical protein Sma1927 FT TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): FT 1.7e-39, 37.898% id in 314 aa" FT /protein_id="CAE40617.1" FT /translation="MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDAL FT ARPFAKELGDILGQSIVVENKPSNTGQIGATDVARAAADGYTLLLSSAAFATTPAFYPQ FT VPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGIQAL FT ATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTG FT SKRMAILPDVPTVAETLPGFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQML FT ERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP" FT misc_feature 245221..245289 FT /note="Signal peptide predicted for BP0237 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 23 and 24" FT CDS complement(246196..246687) FT /transl_table=11 FT /gene="folK" FT /locus_tag="BP0238" FT /product="2-amino-4-hydroxy-6-hydroxymethyldihydropteridi FT ne pyrophosphokinase" FT /EC_number="2.7.6.3" FT /note="Similar to Escherichia coli FT 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine FT pyrophosphokinase FolK or B0142 SW:HPPK_ECOLI (P26281) (158 FT aa) fasta scores: E(): 3.4e-15, 38.854% id in 157 aa, and FT to Pseudomonas fluorescens FT 7,8-dihydro-6-hydroxymethylpterin -pyrophosphokinase FolK FT TR:Q9ZEP9 (EMBL:AJ130846) (133 aa) fasta scores: E(): FT 1.1e-17, 52.101% id in 119 aa" FT /protein_id="CAE40618.1" FT /translation="MNGSPASTLAYVGLGASLGDAAATLRSVLAELAAAPGILACKASR FT LYRTAPVEAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRHGRERPYRNAPRTLDLDLL FT LYGEQAIDHPRLSVPHPRMHERAFVLAPLCELVPALRLAQGDCAALLAALEDQAIEPLR FT " FT misc_feature complement(246277..246663) FT /note="HMMPfam hit to PF01288, FT 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)" FT misc_feature complement(246376..246411) FT /note="ScanRegExp hit to PS00794, FT 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase FT signature." FT misc_feature complement(246622..246687) FT /note="Signal peptide predicted for BP0238 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.859) with cleavage site FT probability 0.659 between residues 22 and 23" FT CDS complement(246684..248039) FT /transl_table=11 FT /gene="pcnB" FT /locus_tag="BP0239" FT /product="poly(A) polymerase" FT /EC_number="2.7.7.19" FT /note="Similar to Escherichia coli poly(A) polymerase PcnB FT or B0143 SW:PCNB_ECOLI (P13685) (472 aa) fasta scores: E(): FT 6e-64, 43.596% id in 445 aa, and to Pseudomonas aeruginosa FT poly(A) polymerase PcnB or Pa4727 TR:Q9HV72 (EMBL:AE004886) FT (467 aa) fasta scores: E(): 7.2e-77, 48.802% id in 459 aa" FT /protein_id="CAE40619.1" FT /translation="MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCD FT VLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVV FT FGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHTEEV FT IDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMAS FT LIENVPASRLFDEMLKLLTCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELA FT LERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQGEHNIPALVQAADSVLDEQTE FT KLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVL FT AQWWMDLANGDDATRAEMIEETAHLPRETGDAPAQKRRRPRRRPSNRPREPQ" FT misc_feature complement(247158..247181) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(247227..247706) FT /note="HMMPfam hit to PF01743, Poly A polymerase family" FT CDS complement(248040..248738) FT /transl_table=11 FT /locus_tag="BP0240" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0335 TR:Q9I6F6 (EMBL:AE004471) (217 aa) fasta FT scores: E(): 1e-33, 46.575% id in 219 aa, and to Neisseria FT meningitidis hypothetical protein Nma1278 TR:Q9JUK0 FT (EMBL:AL162755) (222 aa) fasta scores: E(): 2e-31, 41.629% FT id in 221 aa" FT /protein_id="CAE40620.1" FT /translation="MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRND FT DLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIRPSLTVQAVDVVRGH FT LAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVR FT VNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVID FT LFDHLEDAKS" FT CDS complement(248735..249436) FT /transl_table=11 FT /locus_tag="BP0241" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma1279 TR:Q9JUJ9 (EMBL:AL162755) (243 aa) fasta FT scores: E(): 1e-19, 35.470% id in 234 aa, and to FT Escherichia coli hypothetical protein yfge YfgE or B2496 or FT Z3759 or Ecs3358 SW:YFGE_ECOLI (P76570) (248 aa) fasta FT scores: E(): 6.5e-15, 33.906% id in 233 aa" FT /protein_id="CAE40621.1" FT /translation="MNRQLLLDVLPAPAPALNNYIAGPNGQALAAAHALTAGRAIYLWG FT PAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDAR FT QAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLSDAD FT KLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLR FT AMLADPHSQAT" FT CDS 249689..250738 FT /transl_table=11 FT /gene="purM" FT /gene_synonym="purG" FT /locus_tag="BP0242" FT /product="phosphoribosylformylglycinamidine cyclo-ligase" FT /EC_number="6.3.3.1" FT /note="Similar to Escherichia coli FT phosphoribosylformylglycinamidine cyclo-ligase PurM or PurG FT or B2499 SW:PUR5_ECOLI (P08178) (344 aa) fasta scores: E(): FT 1.5e-71, 56.598% id in 341 aa, and to Neisseria FT meningitidis putative phosphoribosylformylglycinamidine FT cyclo-ligase PurM or Nma1421 TR:Q9JUA2 (EMBL:AL162755) (344 FT aa) fasta scores: E(): 1.4e-84, 67.151% id in 344 aa" FT /protein_id="CAE40622.1" FT /translation="MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLAGIG FT GFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWNRHDTVGIDLVAMSVNDILVQGAEP FT LYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAGFAV FT GAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDV FT VMAPTRIYVKQVLAALDRHGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPK FT LFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVAATLREQGEIVNRIGEIVPQQ FT DGMAQTVVV" FT misc_feature 249794..250702 FT /note="HMMPfam hit to PF00586, AIR synthase related FT protein, N-terminal domain" FT CDS complement(250844..251785) FT /transl_table=11 FT /gene="miaA" FT /gene_synonym="trpX" FT /locus_tag="BP0243" FT /product="tRNA delta(2)-isopentenylpyrophosphate FT transferase" FT /EC_number="2.5.1.8" FT /note="Similar to Escherichia coli and Shigella flexneri FT tRNA delta(2)-isopentenylpyrophosphate transferase MiaA or FT TrpX or B4171 SW:MIAA_ECOLI (P16384) (316 aa) fasta scores: FT E(): 1.6e-56, 54.839% id in 310 aa, and to Pseudomonas FT aeruginosa tRNA delta(2)-isopentenylpyrophosphate FT transferase MiaA or Pa4945 TR:Q9HUL9 (EMBL:AE004907) (323 FT aa) fasta scores: E(): 8.8e-60, 57.419% id in 310 aa" FT /protein_id="CAE40623.1" FT /translation="MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMD FT IGTAKPSAAERAQVPQHLLDIRDPAQSYSAAEFRADALRLIAEIHARGRIPLLAGGTML FT YYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQRIQ FT RALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAG FT LVEEVRGLHARPDLHPGLPSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLT FT WLRAQPERVIIDCLAGDAVARTVDAMARALPD" FT misc_feature complement(250901..251674) FT /note="HMMPfam hit to PF01715, IPP transferase" FT misc_feature complement(251711..251785) FT /note="Signal peptide predicted for BP0243 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.522 between residues 25 and 26" FT misc_feature complement(251732..251755) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(251782..253671) FT /transl_table=11 FT /gene="mutL" FT /locus_tag="BP0244" FT /product="DNA mismatch repair protein" FT /note="Similar to Escherichia coli DNA mismatch repair FT protein MutL or B4170 SW:MUTL_ECOLI (P23367) (615 aa) fasta FT scores: E(): 4.4e-33, 39.350% id in 554 aa, and to FT Pseudomonas aeruginosa DNA mismatch repair protein MutL or FT Pa4946 TR:Q9HUL8 (EMBL:AE004907) (633 aa) fasta scores: FT E(): 1.5e-81, 49.304% id in 647 aa" FT /protein_id="CAE40624.1" FT /translation="MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARA FT IEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALA FT SIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKFLRS FT EATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVGHVLP FT VLAAAGAIALMGMVTRPTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQP FT AYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPD FT GAAPDTAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAG FT IPATDWQSLYRPLPGDAAPAATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRG FT LVLVDMHAAHERVVYEQLKRALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELG FT FEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACH FT GSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ" FT misc_feature complement(251818..251883) FT /note="Predicted helix-turn-helix motif with score 1054 FT (+2.78 SD) at aa 597-618, sequence MEITERADQCNHGRPTWVQWSV" FT misc_feature complement(252718..253248) FT /note="HMMPfam hit to PF01119, DNA mismatch repair protein" FT misc_feature complement(253363..253383) FT /note="ScanRegExp hit to PS00058, DNA mismatch repair FT proteins mutL / hexB / PMS1 signature." FT misc_feature complement(253423..253608) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT CDS 253758..254396 FT /transl_table=11 FT /gene="dedA" FT /locus_tag="BP0245" FT /product="putative membrane protein" FT /note="Similar to Escherichia coli Deda protein or B2317 or FT Z3579 or Ecs3201 SW:DEDA_ECOLI (P09548) (219 aa) fasta FT scores: E(): 6.7e-36, 51.485% id in 202 aa, and to FT Burkholderia mallei DedA TR:Q9AI54 (EMBL:AF285636) (226 aa) FT fasta scores: E(): 5.3e-51, 64.929% id in 211 aa" FT /protein_id="CAE40625.1" FT /translation="MLDFFNMVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPF FT LPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISGNTVNYTIGRYIGPRVFSMNLRFLD FT RNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALLWVI FT SLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ" FT misc_feature join(253827..253895,253953..254021,254211..254279, FT 254307..254375) FT /note="4 probable transmembrane helices predicted for FT BP0245 by TMHMM2.0 at aa 24-46, 66-88, 152-174 and 184-206" FT misc_feature 253839..254318 FT /note="HMMPfam hit to PF00597, DedA family" FT CDS complement(254539..255783) FT /transl_table=11 FT /gene="amiC" FT /locus_tag="BP0246" FT /product="N-acetylmuramoyl-L-alanine amidase" FT /EC_number="3.5.1.28" FT /note="Similar to Escherichia coli FT N-acetylmuramoyl-L-alanine amidase AmiC precursor or B2817 FT SW:AMIC_ECOLI (Q46929) (417 aa) fasta scores: E(): 8.8e-41, FT 50.608% id in 411 aa, and to Pseudomonas aeruginosa FT N-acetylmuramoyl-L-alanine amidase AmiA or Pa5538 TR:Q9HT36 FT (EMBL:AE004966) (397 aa) fasta scores: E(): 1e-33, 41.667% FT id in 408 aa" FT /protein_id="CAE40626.1" FT /translation="MRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAA FT LNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLKQSVAPQVFTLKPVADYQYRLVLDL FT YPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPALPAP FT PIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQ FT PYMRAYLTRDDDYFVPLHVRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGAS FT STQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTTAQINDSLKVGSAFLDEIKKI FT NRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDR FT YFTANPPLARVGDVS" FT misc_feature complement(254578..255057) FT /note="HMMPfam hit to PF01520, N-acetylmuramoyl-L-alanine FT amidase" FT CDS complement(255855..256391) FT /transl_table=11 FT /locus_tag="BP0247" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical protein FT YjeE or B4168 or Z5775 or Ecs5144 SW:YJEE_ECOLI (P31805) FT (153 aa) fasta scores: E(): 1.6e-19, 44.218% id in 147 aa, FT and to Neisseria meningitidis hypothetical protein Nmb0457 FT TR:Q9K0V2 (EMBL:AE002401) (153 aa) fasta scores: E(): FT 8.7e-18, 44.375% id in 160 aa" FT /protein_id="CAE40627.1" FT /translation="MSAPPTTLCLHLPDEAATENLARQLAPLVDGRRGGQPGGQIHLQG FT DLGAGKTAFTRALLRECGIQGRIKSPSYALLESYKVSNLYFYHLDFYRFSDSREWLDAG FT FRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNAIVP FT PPTARSLPAPPPADA" FT misc_feature complement(255954..256340) FT /note="HMMPfam hit to PF02367, Uncharacterised P-loop FT hydrolase UPF0079" FT misc_feature complement(256236..256259) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 256543..257934 FT /transl_table=11 FT /gene="fumC" FT /locus_tag="BP0248" FT /product="fumarate hydratase class II" FT /EC_number="4.2.1.2" FT /note="Similar to Escherichia coli fumarate hydratase class FT II FumC or B1611 SW:FUMC_ECOLI (P05042) (467 aa) fasta FT scores: E(): 4.8e-121, 71.522% id in 460 aa, and to FT Myxococcus xanthus fumarate hydratase Fhy TR:P95331 FT (EMBL:AF013216) (466 aa) fasta scores: E(): 1e-119, 70.370% FT id in 459 aa" FT /protein_id="CAE40628.1" FT /translation="MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVA FT AMARLKRAAAKVNAELGELDPQVADAIMRAADEVIAGKWPDEFPLSVWQTGSGTQSNMN FT MNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPAL FT KALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLH FT QLAIGGTAVGTGLNAHPQFSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALK FT TLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIMPGKVNPTQCEAVTMLAAQVM FT GNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITE FT LVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDM FT TNARR" FT misc_feature 256573..257910 FT /note="HMMPfam hit to PF00206, Lyase" FT misc_feature 257488..257517 FT /note="ScanRegExp hit to PS00163, Fumarate lyases FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(257951..258931) FT /transl_table=11 FT /locus_tag="BP0249" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5466 TR:Q9HTA4 (EMBL:AE004959) (314 aa) fasta FT scores: E(): 1.1e-31, 43.189% id in 301 aa, and to FT Rhizobium meliloti hypothetical transmembrane protein FT Smc01358 TR:CAC45885 (EMBL:AL591786) (311 aa) fasta scores: FT E(): 3.2e-19, 31.922% id in 307 aa" FT /protein_id="CAE40629.1" FT /translation="MSENSSLRRDAEAPLLSIFLPGSMSVALLVLPDFMLVALGWALRH FT KLGFSREFFAGTERMVYFVLFPALLFQSILRTPISAGHAMQLLQATAALMACGVALAWL FT AGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANVAAV FT YGLARHSGNGLLRELARNPLLVSTLLSLACNLAGLSLPGPIDTVMARLGAAALALGIMC FT VGASLAWEGGKGHGRLIGWMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTAS FT AAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAAGLGAPN" FT misc_feature complement(join(257975..258040,258056..258121, FT 258152..258217,258245..258310,258326..258391, FT 258431..258496,258605..258670,258710..258766, FT 258827..258892)) FT /note="9 probable transmembrane helices predicted for FT BP0249 by TMHMM2.0 at aa 13-35, 55-74, 87-109, 145-167, FT 180-202, 207-229, 238-260, 270-292 and 297-319" FT CDS 259067..260050 FT /transl_table=11 FT /locus_tag="BP0250" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 1.1e-49, 44.207% id in 328 aa, and to FT Comamonas testosteroni OrfJ protein TR:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 1.3e-40, FT 39.752% id in 322 aa." FT /protein_id="CAE40630.1" FT /translation="MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGS FT TDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNP FT ACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSG FT TCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKL FT RAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALK FT DPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVKKQNIKLD" FT misc_feature 259067..259141 FT /note="Signal peptide predicted for BP0254 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.968 between residues 25 and 26" FT CDS complement(260115..261014) FT /transl_table=11 FT /locus_tag="BP0251" FT /product="LysR family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT activator protein LysR or B2839 SW:LYSR_ECOLI (P03030) (311 FT aa) fasta scores: E(): 5.5e-19, 32.155% id in 283 aa, and FT to Rhizobium loti transcriptional regulator Mlr7023 FT TR:Q987J8 (EMBL:AP003010) (301 aa) fasta scores: E(): FT 1.7e-21, 34.237% id in 295 aa" FT /protein_id="CAE40631.1" FT /translation="MRLRHIEIFEAIRRTGSLTEAAAALHISQPAASKLLAHAEAQLGF FT KLFERVKGRLVATREAEILAPEVARLNQDLGSVRRLAASLRDRPHGHLRLGCAPALGLG FT LLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANNHPGLTRTSLGHT FT ELVHLSRLPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYV FT ACALAEAGCGDAVVDAITARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIE FT RLRQACSVLQAQPAPQPE" FT misc_feature complement(260580..261008) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(260904..260969) FT /note="Predicted helix-turn-helix motif with score 1762 FT (+5.19 SD) at aa 16-37, sequence GSLTEAAAALHISQPAASKLLA" FT CDS 261121..262875 FT /transl_table=11 FT /gene="ggt" FT /locus_tag="BP0252" FT /product="gamma-glutamyltranspeptidase" FT /EC_number="2.3.2.2" FT /note="Similar to Escherichia coli FT gamma-glutamyltranspeptidase precursor Ggt or B3447 FT SW:GGT_ECOLI (P18956) (580 aa) fasta scores: E(): 1.6e-52, FT 35.484% id in 589 aa, and to Vibrio cholerae FT gamma-glutamyltranspeptidase Vc0194 TR:Q9KVF2 FT (EMBL:AE004109) (588 aa) fasta scores: E(): 5e-98, 49.206% FT id in 567 aa" FT /protein_id="CAE40632.1" FT /translation="MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERA FT QAHAQRYMIATANPLASEAGYRILRAGGSATDAIIAAQLVLNLVEPQSSGIGGGAFMVH FT YDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLELAHR FT QHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVG FT HRLRNPEFAATLRSIAREGADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVRE FT PVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARMRPGSVEAVHYFSEAGRLAFA FT DRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAI FT EVPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVA FT NRVEPGKRPRSSMAPMIVFRAGKPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIA FT LPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQGIVIGPHGLAGGADPR FT REGLALGD" FT misc_feature 261121..261186 FT /note="Signal peptide predicted for BP0252 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT misc_feature 261316..262860 FT /note="HMMPfam hit to PF01019, FT Gamma-glutamyltranspeptidase" FT CDS complement(262883..264007) FT /transl_table=11 FT /locus_tag="BP0253" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3592 TR:Q9HY34 (EMBL:AE004779) (395 aa) fasta FT scores: E(): 1.4e-94, 68.144% id in 361 aa, and to FT Rhizobium meliloti putative conserved membrane-anchored FT protein Smb21182 TR:CAC49248 (EMBL:AL603645) (394 aa) fasta FT scores: E(): 7.2e-57, 44.986% id in 369 aa" FT /protein_id="CAE40633.1" FT /translation="MAVAALPPGALQGCRVIDLSRVLGGPYCTQILADHGADVLKIEPP FT GGDETRGWGPPFSGQTASYFIGVNRNKRGMALDLSQPAGQELLRGLLADADVLVENFKP FT GTLEKWGLGYDTLSQAFPRLVHCRVSGFGADGPLGGLPGYDACAQAMCGLMSVNGEADG FT PATRVGLPVVDMVTGLNAAVAVLLALQERQRSGLGQFLDITLYDCALSLLHPHAPNYFY FT SGRVPTRTGNAHPNIAPYKTLPTGAGPIFLAVGNNRQFAALADALGAPQLAQDARFASN FT AERLAHRDALCAALTELLRPHEAASLAERLLRLGVPAAAVLDVAQALDHPHARHRGMLL FT EAGDYRGIASPIKLSRTPARLRSVPPALQEPAGA" FT misc_feature complement(263216..263785) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS complement(264021..265001) FT /transl_table=11 FT /locus_tag="BP0254" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 5.2e-48, 45.122% id in 328 aa, and to FT Comamonas testosteroni OrfJ protein TR:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 4.8e-44, FT 43.750% id in 320 aa." FT /protein_id="CAE40634.1" FT /translation="MQQLIRSLVLAAGLALLGGAAAPALADYPDRPVTLVVPFPPGGPT FT DAMARRLAEGLKTQLDQTVVVENRGGAGGNIGAELVAHAKPDGYTLLFGTSGPLAINIS FT LYKKQNYDPRTSFAPIVRIGHLPNILVVHPSVPANNVQELIAYAKANPDKLSYASSGNG FT ASSHLAGVLFNRMAGTRILHVSYKGTGPALNDLLGGQVSMSFTDILTALPHIQAGKLKA FT IGLASAQRSQALPELPTIAEQGLAGYDVSVFFGIVAPKGTPDAIVQKLNAAFIAALDAP FT EVRDTLRKQGIVPAPERTPQALAGFINEEVDKWGELIRAAQISLD" FT misc_feature complement(264924..265001) FT /note="Signal peptide predicted for BP0254 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 26 and 27" FT CDS complement(265037..265630) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0255" FT /product="C-terminal region of a putative oxidoreductase FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. This CDS is the C-terminal region of FT BP3256. Similar to the C-terminal region of Pseudomonas FT aeruginosa probable acyl-CoA dehydrogenase Pa3593 TR:Q9HY33 FT (EMBL:AE004779) (575 aa) fasta scores: E(): 2.5e-31, FT 55.556% id in 198 aa, and to Mycobacterium tuberculosis FT CDC1551 putative acyl-CoA dehydrogenase Mt3904 TR:AAK48270 FT (EMBL:AE007184) (593 aa) fasta scores: E(): 1.2e-09, FT 34.973% id in 183 aa" FT misc_feature complement(265403..265633) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature complement(265463..265522) FT /note="ScanRegExp hit to PS00073, Acyl-CoA dehydrogenases FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT repeat_region 265630..265661 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 265630..266682 FT CDS 265732..266682 FT /transl_table=11 FT /locus_tag="BP0256" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40636.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 265990..266055 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 266113..266646 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(266651..266682) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 266682..267068 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0257" FT /product="C-terminal region of TonB dependent receptor FT protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. This is the C-terminal region of BP0703. FT Similar to the C-terminal region of Pseudomonas spBG33R FT ferrisiderophore receptor-like protein TR:Q9RC04 FT (EMBL:AF153707) (691 aa) fasta scores: E(): 1.4e-26, FT 55.645% id in 124 aa, and to Neisseria meningitidis FT putative siderophore receptor FhuA TR:Q9JPK1 FT (EMBL:AJ391270) (703 aa) fasta scores: E(): 4.9e-09, FT 35.156% id in 128 aa" FT misc_feature 266760..267065 FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT misc_feature 267012..267065 FT /note="ScanRegExp hit to PS01156, TonB-dependent receptor FT proteins signature 2." FT CDS 267242..267787 FT /transl_table=11 FT /locus_tag="BP0258" FT /product="conserved hypothetical protein" FT /note="Similar to Agrobacterium tumefaciens Agr_l_1535p FT TR:AAK89343 (EMBL:AE008274) (214 aa) fasta scores: E(): FT 7.4e-40, 62.941% id in 170 aa, and to Methanococcus FT jannaschii hypothetical protein Mj1563 SW:YF63_METJA FT (Q58958) (152 aa) fasta scores: E(): 2.8e-06, 30.935% id in FT 139 aa" FT /protein_id="CAE40638.1" FT /translation="MALSPQTERFVLHFGEMGSRWGVNRTVGQIYALLFLSPKALHADD FT IAEALGFSRSNVSMGLKELQSWRLVKLMHQVGDRRDYFETPKDVWEIFRILMEEKRKRE FT IDPTLTLLRDTLLERPADEAQVYAQQRMHEMLELIELSTGWFDEVQRLPPETLQNLMKL FT GSKVQKVLGFAGKLRGKD" FT misc_feature 267362..267427 FT /note="Predicted helix-turn-helix motif with score 1256 FT (+3.46 SD) at aa 41-62, sequence LHADDIAEALGFSRSNVSMGLK" FT CDS 267871..269490 FT /transl_table=11 FT /gene="cydA" FT /gene_synonym="cyd-1" FT /locus_tag="BP0259" FT /product="cytochrome D ubiquinol oxidase subunit I" FT /EC_number="1.10.3.-" FT /note="Similar to Escherichia coli cytochrome D ubiquinol FT oxidase subunit I CydA or Cyd-1 or B0733 SW:CYDA_ECOLI FT (P11026) (522 aa) fasta scores: E(): 1.8e-121, 60.980% id FT in 510 aa, and to Vibrio cholerae cytochrome D ubiquinol FT oxidase subunit I Vc1844 TR:Q9KR03 (EMBL:AE004260) (541 aa) FT fasta scores: E(): 1.7e-122, 60.148% id in 542 aa" FT /protein_id="CAE40639.1" FT /translation="MSAVRAGLPSGSVSMIDLDVVNLSRFQFAATALYHFLFVPLTLGL FT SFILAIMESVYVMTGRQIWKRMTMFWGTLFGINFALGVATGVAMEFQFGMNWSYYSHYV FT GDIFGAPLALEGLMAFFLEATFVGLFFFGWNRLSKVGHLVVTWLVAFGTNFSALWILIA FT NGWMQNPVGAMFNPDTMRMEMTDFAAVLLNPVAQAKFVHTVSAGYVAGAMFVMSISAWY FT LLKGRHIDLAKRSMAVAASFGLASALSVVVLGDESGYLTTEHQKMKIAAIEAMWHTEPA FT PASFNLIAIPNQEERRNEFAISIPYVMGLIGTRSLTTPLLGIDDLVRRAEVRIREGITA FT YEALQRVRANPKDVDARMLFERTWPDLGYALLVKRYQPDLSKATDEQIAQAALDTVPNV FT APLFWAFRVMVAVGFYLILFFGVAFWLASRGRLDSRPGLLKVALWSLPLPWVAIESGWF FT VAEYGRQPWVIEGVLPTYYAASGLTITDLAISLAIFLVLYTVLLVIGVKVMLHAVKAGP FT KGEASEPAGRRADPVQAAVDAY" FT misc_feature 267937..269442 FT /note="HMMPfam hit to PF01654, Bacterial Cytochrome FT Ubiquinol Oxidase" FT misc_feature join(267952..268020,268078..268146,268204..268272, FT 268291..268359,268474..268542,268579..268632, FT 269077..269145,269182..269250,269320..269388) FT /note="9 probable transmembrane helices predicted for FT BP0259 by TMHMM2.0 at aa 28-50, 70-92, 112-134, 141-163, FT 202-224, 237-254, 403-425, 438-460 and 484-506" FT misc_feature 269101..269148 FT /note="ScanRegExp hit to PS00225, Crystallins beta and FT gamma 'Greek key' motif signature." FT CDS 269506..270660 FT /transl_table=11 FT /gene="cydB" FT /gene_synonym="cyd-2" FT /locus_tag="BP0260" FT /product="cytochrome D ubiquinol oxidase subunit II" FT /EC_number="1.10.3.-" FT /note="Similar to Escherichia coli cytochrome D ubiquinol FT oxidase subunit II CydB or Cyd-2 or B0734 or Z0901 or FT Ecs0769 SW:CYDB_ECOLI (P11027) (379 aa) fasta scores: E(): FT 4.5e-71, 50.529% id in 378 aa, and to Brucella abortus FT cytochrome D oxidase subunit II CydB TR:Q9FDD0 FT (EMBL:AF284438) (384 aa) fasta scores: E(): 1.6e-78, FT 55.789% id in 380 aa." FT /protein_id="CAE40640.1" FT /translation="MDSLIPFDYATLRVLWWLLLGALLIGFAVMDGFDLGVAALLPLVA FT KTDVERRVVLNVVGPVWEGNQVWLITAGGAIFAAWPLLYAASFSGFYLAMMLVLIALIL FT RPVGFKYRSKMEGTRWRSRWDAVLCFCGVVAALVFGVAMGNIILGVPFGFDAATLRPEY FT EGHFYQLFKPFALLAGLVSVAMMVMHGGVLLAWRTHDPVSSRARNWGRLAALATAALFV FT AGGFWVAYGLDGHVITSAVDMHAPSNPMLKTVELQAGGWMANYEKWPLTWIAPALGVGG FT ALLAFVLLSARANVLAFLASSVSIAGIILTVGFALFPFIMPSSSRPGAGLTVWDGSSSL FT LTLWIMLLAVAFFLPIITVYTAWVYRVMRGKVTEDSVDGTPNSY" FT misc_feature 269533..270624 FT /note="HMMPfam hit to PF02322, Cytochrome oxidase subunit FT II" FT misc_feature join(269542..269595,269752..269820,269881..269949, FT 270025..270093,270130..270198,270310..270378, FT 270397..270465,270523..270591) FT /note="8 probable transmembrane helices predicted for FT BP0260 by TMHMM2.0 at aa 13-30, 83-105, 126-148, 174-196, FT 209-231, 269-291, 298-320 and 340-362" FT CDS 270674..270799 FT /transl_table=11 FT /locus_tag="BP0261" FT /product="putative exported protein" FT /note="Similar to Escherichia coli protein YbgT or B0734.1 FT SW:YBGT_ECOLI (P56100) (37 aa) fasta scores: E(): 0.00014, FT 56.250% id in 32 aa, and to Vibrio cholerae hypothetical FT protein Vc1842 TR:Q9KR05 (EMBL:AE004260) (35 aa) fasta FT scores: E(): 1.3e-07, 63.636% id in 33 aa" FT /protein_id="CAE40641.1" FT /translation="MWYFSWILGLSLACAFGILNAMWFELREGHAHDPYKKPADE" FT misc_feature 270674..270736 FT /note="Signal peptide predicted for BP0261 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.954) with cleavage site FT probability 0.819 between residues 21 and 22" FT misc_feature 270677..270745 FT /note="1 probable transmembrane helix predicted for BP0261 FT by TMHMM2.0 at aa 2-24" FT CDS 270796..272547 FT /transl_table=11 FT /locus_tag="BP0262" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="Similar to Escherichia coli transport ATP-binding FT protein CydD or HtrD or B0887 SW:CYDD_ECOLI (P29018) (588 FT aa) fasta scores: E(): 1.9e-57, 38.529% id in 571 aa, and FT to Shewanella sp barophilic bacterium DNA for pressure FT regulated cluster CydD TR:P96012 (EMBL:D88785) (601 aa) FT fasta scores: E(): 7.7e-53, 37.367% id in 562 aa" FT /protein_id="CAE40642.1" FT /translation="MSGASGIEHDPAAALNKPPREHSRWLAMRARAARVPLAVAGAAPL FT IGGVLLVIQAWLLARVLDQAIVQGAARAELATSIVAISALMLARAALAWLGERAGAAAA FT ERIKRQVREALFARLLALGPQWSRQRASGELASAMVEQVEALDAFFAKYLPAMGAAAVL FT PVAFAVVVLPVDVITGLLLLVSAPLIPLFMALVGWGAEAASRRHLQAFARLSGFFADRL FT RGLATLKLYGRAEAEEQSVVAASDALRQRTMAVLRIAFLSSAVLEFFAAQGVAGVAVYI FT GLTYLGFLDVRASVLTLQGGFFCLLLAPEVYGPLRQFAAHYHDRAAARAAVAQIARTFD FT GLPSPGVEPAPPAQAPALARGAARLAASGLTVTQPGRPAPVLREAALQLDAGAHVALRG FT ASGAGKTTLLELLARLRDGAGAIALDGVPLADWDEAALRERVVLIGQRPYLYAGSIADN FT IRLARPGASAALVEEAARRACVMEFAQALPRGLDTPLGSRGHGLSGGQAQRVALARLFL FT RDPGLILLDEPAAHLDAATQARVLDEVLAFAQGRTLLLATHADAVARRLPRQWMLEQGR FT LRELQPA" FT misc_feature join(270904..270972,271015..271083,271240..271308, FT 271321..271389,271570..271638) FT /note="5 probable transmembrane helices predicted for FT BP0262 by TMHMM2.0 at aa 37-59, 74-96, 149-171, 176-198 and FT 259-281" FT misc_feature 270904..271713 FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region." FT misc_feature 271969..272520 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 271990..272013 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 272299..272343 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 272544..274223 FT /transl_table=11 FT /locus_tag="BP0263" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="Similar to Escherichia coli transport ATP-binding FT protein CydC or MdrA or MdrH or SurB or B0886 SW:CYDC_ECOLI FT (P23886) (573 aa) fasta scores: E(): 5.4e-45, 34.535% id in FT 527 aa, and to Vibrio cholerae transport ATP-binding FT protein CydC or Vc1180 TR:Q9KSS6 (EMBL:AE004198) (573 aa) FT fasta scores: E(): 1.3e-48, 35.818% id in 550 aa" FT /protein_id="CAE40643.1" FT /translation="MSLWRLLFRLYARRKGALALALALSLLTVAAGVGLLGVSGWFLTG FT AALAGAGAVFNLFVPSSLVRGLSFIRIASRYGERLAGHAATLRLLADLRASVFRSLVRL FT TPRQLARYRGGDLVARLTSDVDALDTVFLFVLAPVAVALAGGAILTAVMGAWIPAAALV FT VAAALLLCCAVAPWWLARAGRRPGAAVQESAAALRAATLDAVEGHADIAALHAGAQARA FT QFADACEQSARARAAQVRIAARGQWLAQLAAGAAVLAVLWFGLDGLAAGELGGPLLAGL FT LLATIGIFEVAGPVMRGVSRLGAAVAAAARIGEIAAREPDLRDPAAPRALPPAGELALE FT DVTFAYPVPDAAPHPVLDGASLRVAPGQRVAIVGASGAGKSTVLQLLLRLEDPQRGAVR FT YAGCDVRECAQAELHRRVALLSQDAPLLLGTVRTNLLIGDAQADDAALWRALDAARLGE FT VVRGLPHGLDTWIGETGAGLSAGQARRLCLARALLTGASAILLDEPTAGLDAATEAELL FT ADLARATQGRTVVLATHARLPPGTVDTVYTLQAGRLHRAAPM" FT misc_feature 272544..272690 FT /note="Signal peptide predicted for BP0263 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.716 between residues 49 and 50" FT misc_feature 272595..273428 FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region." FT misc_feature join(272601..272669,272682..272750,272934..273002, FT 273012..273080,273264..273332,273360..273428) FT /note="6 probable transmembrane helices predicted for FT BP0263 by TMHMM2.0 at aa 20-42, 47-69, 131-153, 157-179, FT 241-263 and 273-295" FT misc_feature 273642..274196 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 273663..273686 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 273975..274019 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 274286..274834 FT /transl_table=11 FT /gene="apt" FT /locus_tag="BP0264" FT /product="adenine phosphoribosyltransferase" FT /EC_number="2.4.2.7" FT /note="Similar to Escherichia coli adenine FT phosphoribosyltransferase Apt or B0469 SW:APT_ECOLI FT (P07672) (183 aa) fasta scores: E(): 1.4e-28, 45.349% id in FT 172 aa, and to Neisseria meningitidis adenine FT phosphoribosyltransferase Nmb1662 TR:Q9JYB4 (EMBL:AE002517) FT (188 aa) fasta scores: E(): 1.2e-39, 60.355% id in 169 aa" FT /protein_id="CAE40644.1" FT /translation="MQTDYAELVRRTIRSVPDWPTPGVTFRDITPVLQDPRTFRVLIDL FT FVYRYMRQRLDLVAGVDARGFIVGAVLAHELNLGFVPVRKKSKLPYRTVAEEYSLEYGN FT AAVEMHTDSVRTGQRVLLVDDLIDTGGTMLAAIKLLQRLGANVVEAAAIIDLPYLGGSA FT QITATGTPLYTVCQYQEGD" FT misc_feature 274355..274822 FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain" FT misc_feature 274643..274681 FT /note="ScanRegExp hit to PS00103, Purine/pyrimidine FT phosphoribosyl transferases signature. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(join(274847..274978,274978..275733)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0265" FT /product="probable LysR-family transcriptional regulator FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 252. The sequence has been checked FT and believed to be correct. Similar to Rhizobium meliloti FT putative LysR-family transcriptional regulator Sma1602 FT TR:AAK65531 (EMBL:AE007274) (302 aa) fasta scores: E(): FT 2e-48, 47.959% id in 294 aa, and to Pseudomonas aeruginosa FT probable transcriptional regulator Pa3135 TR:Q9HZ90 FT (EMBL:AE004737) (306 aa) fasta scores: E(): 3.5e-32, FT 39.041% id in 292 aa. Also similar to BP3239, 49.329% FT identity (50.690% ungapped) in 298 aa overlap." FT /db_xref="PSEUDO:CAE40645.1" FT variation complement(274975..274978) FT /note="GGCC in pertussis; (GGCG)GGCC in parapertussis and FT bronchiseptica" FT misc_feature complement(275302..275721) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(275587..275679) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature 275965..276048 FT /note="Signal peptide predicted for BP0266 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 28 and 29" FT CDS 275977..276255 FT /transl_table=11 FT /locus_tag="BP0266" FT /product="putative exported protein" FT /note="no significant database matches. Similar to BP1766, FT BP2719, BP3099, BP3683, and BP3731" FT /protein_id="CAE40646.1" FT /translation="MKRHALATALMVSVTLAGMSAAHADGKTREQVRAELAAAKAAGQV FT TFGELDYPAPAAAPAAGKTREQVRAELAAAKAAGEVTFGELDYPPAK" FT misc_feature 276037..276060 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 276145..276168 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 276465..277298 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0267" FT /product="N-terminal region of an outer membrane porin FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP0138. Similar to the previously sequenced Bordetella FT pertussis outer membrane porin protein precursor FT SW:OMP_BORPE (Q04064) (385 aa) fasta scores: E(): 3.3e-53, FT 58.844% id in 294 aa (BP0840), and to Bordetella pertussis FT OmpQ TR:Q45342 (EMBL:U16266) (364 aa) fasta scores: E(): FT 1.5e-20, 34.752% id in 282 aa (BP3405). Also similar to FT BP2851 (63.345% identity in 281 aa overlap), and to BP0840 FT (58.844% identity in 294 aa overlap)." FT misc_feature 276465..276524 FT /note="Signal peptide predicted for BP0267 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 20 and 21" FT misc_feature 276624..276779 FT /note="HMMPfam hit to PF00267, Gram-negative porin" FT CDS complement(277299..278249) FT /transl_table=11 FT /locus_tag="BP0268" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40648.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 277299..277330 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(277299..278351) FT misc_feature complement(277335..277868) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(277926..277991) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(278320..278351) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 278527..278688 FT /transl_table=11 FT /locus_tag="BP0270" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE40649.1" FT /translation="MGILTVTGDEIEQVTRKKRRQAQAKVLKALGIRLQIRPDGTLLVF FT RTSLGIPH" FT CDS 278696..278836 FT /transl_table=11 FT /locus_tag="BP0271" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE40650.1" FT /translation="MRKSEVLRIWKADIDLPRRMIYLPEAKAGAREQPITAALAEFLDA FT F" FT CDS 278937..>279185 FT /transl_table=11 FT /locus_tag="BP0272" FT /product="integrase (remnant)" FT /note="Partial CDS. Lacking both the N-terminal region and FT a stop codon. Similar to Bacteriophage SfII integrase Int FT TR:O21941 (EMBL:AF021347) (205 aa) fasta scores: E(): FT 0.024, 33.333% id in 78 aa, and to Escherichia coli Int FT protein Int TR:CAC43408 (EMBL:X16664) (386 aa) fasta FT scores: E(): 0.11, 39.726% id in 73 aa" FT /protein_id="CAE40651.1" FT /translation="MGRAGLNIARVVSHTAVSHLVQVGVSLSTVQRMSGPRLAIVARYA FT HQNGDHIRAAMSNLEGRISGTITPKLHKRKSRLQRKRP" FT tRNA complement(279202..279277) FT /note="tRNA Thr anticodon TGT, Cove score 95.16" FT CDS complement(279355..279804) FT /transl_table=11 FT /gene="sspB" FT /locus_tag="BP0273" FT /product="stringent starvation protein B" FT /note="Similar to Escherichia coli stringent starvation FT protein B SspB or B3228 or Z4586 or Ecs4101 SW:SSPB_ECOLI FT (P25663) (165 aa) fasta scores: E(): 9.6e-13, 40.845% id in FT 142 aa, and to Neisseria meningitidis stringent starvation FT protein B Nmb1952 TR:Q9JXN9 (EMBL:AE002543) (130 aa) fasta FT scores: E(): 9.6e-19, 50.407% id in 123 aa" FT /protein_id="CAE40652.1" FT /translation="MGETSTKPYLIRALHEWCTDNGYTPYITVQVDEHTMVPVAHVRDG FT QITLNVGTLATNKLSLGNEFIEFQARFSGVTENVYVPVGAVSAIYARETGAGMGFEVQA FT YEAPEHADAAPPPPESAEAGDAAASPAGDDGDGDEPKRPHLTIVK" FT CDS complement(279814..280425) FT /transl_table=11 FT /gene="sspA" FT /gene_synonym="ssp" FT /locus_tag="BP0274" FT /product="stringent starvation protein A" FT /note="Similar to Escherichia coli stringent starvation FT protein A SspA or Ssp or Pog or B3229 SW:SSPA_ECOLI FT (P05838) (211 aa) fasta scores: E(): 5.4e-29, 42.857% id in FT 203 aa, and to Neisseria meningitidis stringent starvation FT protein A Nmb1953 TR:Q9JXN8 (EMBL:AE002543) (201 aa) fasta FT scores: E(): 1.4e-56, 70.443% id in 203 aa" FT /protein_id="CAE40653.1" FT /translation="MMVLYSGTTCPFSQRCRFVLFEKGMDFEIRDIDLYNKPEDISVMN FT PYGQVPILVERDLVLYESNIINEYIDERFPHPQLMPADPVMRARTRLFLYNFEKELFVH FT VCALEDRSAKPDDKKMVQARQSIRDRLAQLAPMLLKNKYMLGDEFSMLDVAVAPLLWRL FT DHYGIELPKNAAPLQKYAERIFSRPAYIEALTPSEKVMRR" FT misc_feature complement(279862..280422) FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain" FT CDS complement(280584..281432) FT /transl_table=11 FT /gene="petC" FT /locus_tag="BP0275" FT /product="cytochrome C1 precursor" FT /note="Similar to Chromatium vinosum cytochrome C1 FT precursor PetC SW:CY1_CHRVI (O31216) (244 aa) fasta scores: FT E(): 2.7e-26, 41.637% id in 281 aa, and to Neisseria FT meningitidis ubiquinol--cytochrome C reductase, cytochrome FT C1 Nmb2051 TR:Q9JXH1 (EMBL:AE002555) (266 aa) fasta scores: FT E(): 6.6e-32, 42.908% id in 282 aa" FT /protein_id="CAE40654.1" FT /translation="MIKKLIGAVALMLTCTATLAAEGGFPLEKAPDRINDVASLQNGAK FT LFVNYCLNCHSAQSMRYNKLQDIGLTDQQIQDSLLFTGDKVGDLMKIAMTPQDAKKWFG FT TTPPDLSVIARAKSVNAGPSGADYLYTYLRTFYRDTSKATGWNNLAFPNVGMPHALWDR FT QGPRELTTVAVHQVEAADGTRNWERVTTVYDAQGYATAKTEPLADYRGHGSLETRFKAV FT NPAQSADYDQDVADLTAFMSWMAEPVQLYRKQLGVWVLLFLGLFLVVAWRLNAAYWKHV FT R" FT misc_feature complement(join(280605..280670,281352..281417)) FT /note="2 probable transmembrane helices predicted for FT BP0275 by TMHMM2.0 at aa 17-39 and 266-288" FT misc_feature complement(281088..281153) FT /note="Predicted helix-turn-helix motif with score 986 FT (+2.55 SD) at aa 94-115, sequence MTPQDAKKWFGTTPPDLSVIAR" FT misc_feature complement(281265..281282) FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature complement(281373..281432) FT /note="Signal peptide predicted for BP0275 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.992 between residues 20 and 21" FT CDS complement(281458..282840) FT /transl_table=11 FT /gene="petB" FT /gene_synonym="cytB" FT /locus_tag="BP0276" FT /product="cytochrome B" FT /note="Similar to Rhodocyclus gelatinosus cytochrome B PetB FT TR:AAK55422 (EMBL:AF380164) (423 aa) fasta scores: E(): FT 5.3e-99, 70.824% id in 449 aa, and to Neisseria FT meningitidis cytochrome B CytB or Petb or Nma0384 TR:Q9JWG5 FT (EMBL:AL162753) (449 aa) fasta scores: E(): 6.1e-92, FT 58.747% id in 463 aa" FT /protein_id="CAE40655.1" FT /translation="MAGEKTVETTGLLGWLDQRFPVTSTWKAHLSEYYAPKNFNFWYFF FT GSLALLVLVIQIVTGIFLVMHYKPDAERAFQSVEYIMREVPWGWLVRYMHSTGASMFFV FT VVYLHMLRGLFYGSYRKPRELVWIFGVAIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNL FT FSAIPFIGPELSIWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHLVALHEVGSNN FT PDGVEIKKGPKDKYGRPKDGIPFHPFYTVHDIMGVAGFLIIFAAIVFFGPEMGGYFLEY FT NNFLPADPLKTPPHIAPVWYFTPFYSMLRATTDVFTWVLAGAAILGAIALLLRAKGAMR FT IVAPVILVVVAVLLRTIDAKFWGVVAMGGAVVILFFLPWLDHSPVKSIRYRPTWHKWLY FT GIFIVNFLVLGYLGTQPPSDAFNLTSQIGTLIYLGFFFLMPVWSRLGTFKPVPDRVTFH FT AH" FT misc_feature complement(join(281515..281580,281602..281655, FT 281701..281757,281779..281829,281842..281895, FT 282028..282093,282199..282264,282304..282369, FT 282400..282465,282487..282552,282652..282717)) FT /note="11 probable transmembrane helices predicted for FT BP0276 by TMHMM2.0 at aa 41-63, 96-118, 125-147, 157-179, FT 192-214, 249-271, 315-333, 337-354, 361-380, 395-413 and FT 420-442" FT misc_feature complement(281908..281985) FT /note="HMMPfam hit to PF00032, Cytochrome FT b(C-terminal)/b6/petD" FT misc_feature complement(282184..282813) FT /note="HMMPfam hit to PF00033, Cytochrome FT b(N-terminal)/b6/petB" FT misc_feature complement(282556..282591) FT /note="ScanRegExp hit to PS00192, Cytochrome b/b6 FT heme-ligand signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(282905..283546) FT /transl_table=11 FT /gene="petA" FT /locus_tag="BP0277" FT /product="ubiquinol-cytochrome C reductase iron-sulfur FT subunit" FT /EC_number="1.10.2.2" FT /note="Similar to Chromatium vinosum ubiquinol-cytochrome C FT reductase iron-sulfur subunit PetA SW:UCRI_CHRVI (O31214) FT (207 aa) fasta scores: E(): 6.6e-34, 51.613% id in 186 aa, FT and to Rhodocyclus gelatinosus rieske protein PetA FT TR:AAK55421 (EMBL:AF380164) (198 aa) fasta scores: E(): FT 8.4e-50, 65.979% id in 194 aa" FT /protein_id="CAE40656.1" FT /translation="MSQDTLVHDDDGAVDPNLPPDPSRRFWVTTACAVGGVAGVATAVP FT FVSTFAPSEKARAAGAPVEVDVGDLAPGQMRTVEWRGKPVWIIRRTDDQLKGIKSQDGL FT MADPNSERPGFTPAYAKNEYRSRKPELFVCVGICTHLGCSPTAHFETGGGAGMPGNWQG FT GFLCPCHGSTFDMAGRVYKDKPAPDNLEVPPYQYLSDTRIIVGVDEDNKA" FT misc_feature complement(282989..283192) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain" FT misc_feature complement(283031..283048) FT /note="ScanRegExp hit to PS00200, Rieske iron-sulfur FT protein signature 2." FT misc_feature complement(283115..283135) FT /note="ScanRegExp hit to PS00199, Rieske iron-sulfur FT protein signature 1." FT CDS 283686..284144 FT /transl_table=11 FT /gene="mscL" FT /locus_tag="BP0278" FT /product="large-conductance mechanosensitive channel" FT /note="Similar to Clostridium perfringens large-conductance FT mechanosensitive channel MscL SW:MSCL_CLOPE (P53380) (152 FT aa) fasta scores: E(): 3.7e-14, 46.774% id in 124 aa, and FT to Bradyrhizobium japonicum MscL TR:Q9RH75 (EMBL:AF065159) FT (157 aa) fasta scores: E(): 1.6e-23, 55.862% id in 145 aa" FT /protein_id="CAE40657.1" FT /translation="MSKATGFIKEFRDFAVKGNAIDLAVGVIIGAAFGKIVDSLVKDVV FT MPLVNFILGGSVDFSNKFLVLSMPDGYTGPMTYADLTKAGANVLAWGNFITIIINFVLL FT AFVIFWMVKAIYFARRKEEAAPEAPAAPPEDVTVLREIRDLLKDKQGS" FT misc_feature 283704..284132 FT /note="HMMPfam hit to PF01741, Large-conductance FT mechanosensitive channel, MscL" FT misc_feature join(283743..283796,283815..283883,283947..284015) FT /note="3 probable transmembrane helices predicted for FT BP0278 by TMHMM2.0 at aa 20-37, 44-66 and 88-110" FT CDS complement(284169..284945) FT /transl_table=11 FT /locus_tag="BP0279" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4445 TR:Q9HVX2 (EMBL:AE004859) (252 aa) fasta FT scores: E(): 8.6e-49, 53.516% id in 256 aa, and to FT Neisseria meningitidis hypothetical protein Nma0382 FT SW:Y382_NEIMA (Q9JWG6) (249 aa) fasta scores: E(): 6.7e-46, FT 50.996% id in 251 aa" FT /protein_id="CAE40658.1" FT /translation="MKTIHIRELADWLDGALQAARFKDYCPNGLQVEGKAEIAHIITGV FT TASEALLRAAIERGADAVLVHHGWFWRNEDRRVLGPRRTRLALALGHELNLLAYHLPLD FT AHPQWGNNAQLARVLGLQAETGPDGAPRTCGADNLVWLGSAPGVQTVAQLQQRVAERLG FT RTPLVVGEPDRPVRRVAWCTGGAQGMLADAVDAGADAYITGEASESTVHLARETGVAFV FT GAGHHATERYGVQALGEAVARQFGIRVEFIDIDNPV" FT misc_feature complement(284184..284909) FT /note="HMMPfam hit to PF01784, Domain of unknown function FT DUF34" FT misc_feature 284978..285037 FT /note="1 probable transmembrane helix predicted for BP0280 FT by TMHMM2.0 at aa 5-24" FT CDS 284999..286135 FT /transl_table=11 FT /gene="degQ" FT /gene_synonym="hhoA" FT /locus_tag="BP0280" FT /product="protease" FT /EC_number="3.4.21.-" FT /note="Similar to Escherichia coli protease DegQ precursor FT or HhoA or B3234 SW:DEGQ_ECOLI (P39099) (455 aa) fasta FT scores: E(): 1.6e-38, 41.642% id in 341 aa, and to FT Pseudomonas aeruginosa AlgW protein or Pa4446 TR:Q9HVX1 FT (EMBL:AE004859) (389 aa) fasta scores: E(): 5.9e-58, FT 51.862% id in 376 aa" FT /protein_id="CAE40659.1" FT /translation="MTVSLAILFVVITLRPDWLRLSGPAPATRAPAAAASGQAGASYAD FT AVARAAPAVVNVYTTKHVNVPLVPLPDDPVLRQLFGQVPGLSRREASTSLGSGVIVSAE FT GYVLTNYHVVEAADAIEVALADGRQAAAKVVGADPETDLAVLKLAGKLGELPVATFADK FT RAPRVGDVVLAIGNPFGVGQTTTQGIVSALGRNGLGINTYENFIQTDAAINPGNSGGAL FT IDAHGDLVGINTAIYSETGGSLGIGFAIPVDSARRVMEDIVRTGAVRRGWFGIEPQDMT FT PELARAFQLPREARGVIIAGVMRDGPAGKAGMRVGDIVQALNGAPVIDTRGLLGQIASL FT QPGQQAVASVLRAGKPADRLLPACMPLRCPPWPAIRPG" FT misc_feature 285242..285775 FT /note="HMMPfam hit to PF00089, Trypsin" FT misc_feature 285779..286057 FT /note="HMMPfam hit to PF00595, PDZ domain (Also known as FT DHR or GLGF)." FT CDS complement(286132..287082) FT /transl_table=11 FT /locus_tag="BP0281" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40660.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI" FT repeat_region 286132..286163 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(286132..287184) FT misc_feature complement(286168..286701) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(286759..286824) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(287153..287184) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(287181..287807) FT /transl_table=11 FT /locus_tag="BP0282" FT /product="putative regulatory protein" FT /note="Similar to Bacillus subtilis protease synthase and FT sporulation negative regulatory protein Pai2 PaiB FT SW:PAIB_BACSU (P21341) (207 aa) fasta scores: E(): 3.2e-17, FT 30.476% id in 210 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa4182 TR:Q9HWJ9 (EMBL:AE004834) (212 FT aa) fasta scores: E(): 3.6e-27, 41.237% id in 194 aa" FT /protein_id="CAE40661.1" FT /translation="MYTPPAYEERDRHKLHAWMRDWSFATLVTHGDQGLQATHLPFLLD FT PLRGPHGTLISHLARRNPQAADIQAGAQAMVVFQGPHAFISPSWYRNRQTFPTWNYAAI FT HAHGQAAAIEDAQRIRAILTRTVQTYDTPLGGEWTFEAMPEDLIVPRLSAIIALEIPIA FT RLEGKVKLNQDKSPEDRAGVLAALENRRDPGSRGVARMMREALLA" FT CDS complement(287830..288756) FT /transl_table=11 FT /locus_tag="BP0283" FT /product="putative 2-hydroxyacid dehydrogenase" FT /note="Similar to Escherichia coli putative 2-hydroxyacid FT dehydrogenase in phoH-csgG intergenic region YcdW or B1033 FT SW:YCDW_ECOLI (P75913) (325 aa) fasta scores: E(): 2.7e-30, FT 36.364% id in 297 aa, and to Rhizobium loti probable FT dehydrogenase Mll7048 TR:Q987H7 (EMBL:AP003010) (307 aa) FT fasta scores: E(): 1.1e-35, 42.391% id in 276 aa" FT /protein_id="CAE40662.1" FT /translation="MTLIAIASQAPDLLRLPPALRALDPSIDVVVWPDPRCAAAEVAVC FT WAPPPGALAAMPALRLLHTVSAGVDNVLAAPGLPDVPLCRVVDAELNLGMAQYILWGAL FT YFSRGFDQARASQAAGQWRRPDRYGQPPLRVGLMGLGAIGMAALPLLRAAGLPVTGWSR FT TAKRIDGVATHHGPDGLAPFLAASDILVNLLPLTESTRGLLCAATFAGLPPGAALIHCG FT RGAHLVEADLQAALADGRLRGALVDVYAQEPLPPQHPLWRCPSLVITPHMASVAPFERV FT AGQILENLRRLNAGEALMNLVDPRRGY" FT misc_feature complement(287944..288207) FT /note="HMMPfam hit to PF00389, D-isomer specific FT 2-hydroxyacid dehydrogenase, catalytic domain" FT CDS complement(288765..290351) FT /transl_table=11 FT /locus_tag="BP0284" FT /product="probable extracellular solute-binding protein, FT family 5" FT /note="Similar to Rhizobium meliloti probable extracellular FT solute-binding protein, family 5 Sma2075 TR:AAK65791 FT (EMBL:AE007299) (543 aa) fasta scores: E(): 2e-63, 36.364% FT id in 539 aa, and to Rhizobium loti ABC transporter FT oligopeptide-binding protein Mlr3395 TR:Q98GC1 FT (EMBL:AP003001) (536 aa) fasta scores: E(): 8e-52, 33.594% FT id in 512 aa. Also similar to BP2293, 59.693% identity in FT 521 aa overlap." FT /protein_id="CAE40663.1" FT /translation="MNYRHIRGTLRALLLASAAIATLAGAPAQAQTRGGTLRAIVHPEP FT PILITAINSQSPTQFVGGKIFQGLLTYDADLKPQPSLARAWRISPDGLVYTFELQPDVK FT WHDGKPFSADDVVFSIDKLVREVHPRTKLILNAYVESVRAVDPATVEIRLKEPFAPFIS FT MFETGTMPMMPKHLYEGTDYRNNPANQHPVGTGPFKFKEWVRGSHIALVRNDEYWKPGL FT PYLDGIRFQVIPDSASRAVAFEQANVDLVYGDDVDSVDIKRLRALPGVQYTTKGWEMFG FT PMGLMVLNQREAPFDNVLVRRAVMHALNRDFIVKNIFFGMGRVPTGPFSSATLFHDKDL FT PVYDYNIKKARALIKESGVDVGQRTLRLLAFPYGANWERVGEYTRQTLEQLGFKVDIQA FT TDAGGWASRMSQWDFDISFNHPYQYGDPVLGVQRLYLSSNRVKGTPFGNNQGYHNPKAD FT ALWQQAARSVDPAERQKLYSELQRILVDDAALGWLLEIDYPTLYRGNVHNLVTSAIGVK FT ESFDTVYLDAR" FT misc_feature complement(288777..289022) FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT misc_feature complement(289248..290321) FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT misc_feature complement(290262..290351) FT /note="Signal peptide predicted for BP0284 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 30 and 31" FT CDS complement(290348..291352) FT /transl_table=11 FT /locus_tag="BP0285" FT /product="putative acetyl esterase" FT /note="Similar to Escherichia coli acetyl esterase Aes or FT B0476 SW:AES_ECOLI (P23872) (319 aa) fasta scores: E(): FT 2.7e-29, 35.032% id in 314 aa, and to Streptomyces FT coelicolor putative lipase Sc4b10.32 TR:Q9FC55 FT (EMBL:AL391515) (316 aa) fasta scores: E(): 2.6e-28, FT 36.760% id in 321 aa" FT /protein_id="CAE40664.1" FT /translation="MTTAALPYPLDPQIQRFVERMQADSAAHPRRDLVPVEQAHAISEA FT VRRPWAEGGPQMARTREIHVPTPHGPVRLRVYTPRAARPGPALLYVHGGGWVLFSLDTH FT DRLMREYAERAGLTVIGVDYTRAPEARYPRAIEEIVGVIDWLDAHGAELEVDRARLCIG FT GDSAGANLSVAACLTLRERGAAPLAGMVLNYGVYDANLFRDSTVKYGGGEYLLSTQQMV FT WFYWNYLRAGDDPRDPRISPVHADLRGLPPAFMAITELDLLHDTNQDMAARLREAGVDV FT QAKVYPGTVHSFLEAVSLAQVSVAAFDDTAAWLRAVLRPDAAAAAIHTGEHQP" FT CDS 291552..292412 FT /transl_table=11 FT /locus_tag="BP0286" FT /product="probable transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa0791 TR:Q9I5E7 (EMBL:AE004514) FT (262 aa) fasta scores: E(): 1.2e-37, 44.898% id in 245 aa, FT and to Rhizobium loti probable transcriptional regulator FT Mll2686 TR:Q98HW2 (EMBL:AP003000) (292 aa) fasta scores: FT E(): 2.3e-36, 43.902% id in 246 aa. Also similar to BP0288 FT (40.840% identity in 262 aa overlap), and to BP3550 FT (41.121% identity in 214 aa overlap)" FT /protein_id="CAE40665.1" FT /translation="MPAIAKDPSPRRAPAFPAPRQLSYLDLLTRQVQSAPGEMAALATD FT YPAGTVSSLHRHDRGQLLYAMSGVVTVITDLGSWVVAPGQALWIAPGVLHQTRGFESVA FT IRSLYIDPAHADGLPAACQTIQVSPLLQALILEAVKLPPQDAGSERAGHIRALILDEMR FT HVCAAPLYVPMPRDARLARICQALLRDPANAGSLDAWAAYGGLSRRNLTRLFRAQTGAS FT FNAWRQKVLLMEALARLSRGEQITAVALDLGYGSPGAFTAMFRRALGVSPREYFRWTEA FT PQRAD" FT misc_feature 292131..292388 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family" FT misc_feature 292134..292199 FT /note="Predicted helix-turn-helix motif with score 1165 FT (+3.15 SD) at aa 195-216, sequence GSLDAWAAYGGLSRRNLTRLFR" FT CDS complement(292444..293445) FT /transl_table=11 FT /gene="leuA" FT /locus_tag="BP0287" FT /product="2-isopropylmalate synthase" FT /EC_number="2.3.3.13" FT /note="Similar to Corynebacterium glutamicum FT 2-isopropylmalate synthase LeuA SW:LEU1_CORGL (P42455) (616 FT aa) fasta scores: E(): 8.9e-69, 55.077% id in 325 aa, and FT to Mycobacterium tuberculosis 2-isopropylmalate synthase FT LeuA or Rv3710 or Mt3813 or Mtv025.058 SW:LEU1_MYCTU FT (P96420) (644 aa) fasta scores: E(): 3.1e-73, 58.154% id in FT 325 aa. Also similar to N-terminal region of BP0131, FT 68.598% identity (68.598% ungapped) in 328 aa overlap." FT /protein_id="CAE40666.1" FT /translation="MLAHPATKYRPFAPFAADHAERAWPARRPAAAPIWMSTDLRDGNQ FT ALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEAL FT TQSRPDLMARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRAL FT ADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTAN FT VYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGERTG FT NVDLVALALNLERQGIASGLDFRDMAALRACVSECNQLPIDVFHPYAWLDQD" FT misc_feature complement(292477..293331) FT /note="HMMPfam hit to PF00682, HMGL-like" FT misc_feature complement(292678..292719) FT /note="ScanRegExp hit to PS00816, Alpha-isopropylmalate and FT homocitrate synthases signature 2." FT misc_feature complement(293278..293328) FT /note="ScanRegExp hit to PS00815, Alpha-isopropylmalate and FT homocitrate synthases signature 1." FT CDS 293516..294325 FT /transl_table=11 FT /locus_tag="BP0288" FT /product="probable transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1235 TR:Q9I4A3 (EMBL:AE004553) FT (260 aa) fasta scores: E(): 1.1e-46, 52.697% id in 241 aa, FT and to Rhizobium loti probable transcriptional regulator FT Mll2686 TR:Q98HW2 (EMBL:AP003000) (292 aa) fasta scores: FT E(): 3.4e-35, 40.927% id in 259 aa" FT /protein_id="CAE40667.1" FT /translation="MNPLEKDIAESKPQLAPHEHARAPVTALAVDYRDGEHVPRHRHRR FT AQLLYAIEGVMTVQAEAGIWVAPPTRGIWLPAGMAHSIRMHGQPRVRTVFVAPRAAGHL FT PDRCCVLAVGPLLRELIVAATRVPPDWRPGGRDARLMALLLDEIRLEPALPLHLPQPDE FT PRVARVCRGILREPGAARGLAEWAAELGVTAKTVQRLFVRHTGMTFGRWRQQAGLLWAM FT RRLAEGVRVLDVALELGYDSPSAFAAMFRRAVGEPPSAFAARREPPA" FT misc_feature 294053..294310 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family" FT misc_feature 294056..294121 FT /note="Predicted helix-turn-helix motif with score 1471 FT (+4.20 SD) at aa 181-202, sequence RGLAEWAAELGVTAKTVQRLFV" FT CDS 294403..296262 FT /transl_table=11 FT /gene="ilvD" FT /locus_tag="BP0289" FT /product="dihydroxy-acid dehydratase" FT /EC_number="4.2.1.9" FT /note="Similar to Escherichia coli dihydroxy-acid FT dehydratase IlvD or B3771 SW:ILVD_ECOLI (P05791) (616 aa) FT fasta scores: E(): 9.7e-180, 75.041% id in 617 aa, and to FT Neisseria meningitidis dihydroxy-acid dehydratase Nmb1188 FT or Nmb1150 TR:Q9JS61 (EMBL:AE002466) (619 aa) fasta scores: FT E(): 5.7e-183, 73.506% id in 619 aa. Also similar to FT BP3043, 36.661% identity (40.653% ungapped) in 611 aa FT overlap." FT /protein_id="CAE40668.1" FT /translation="MPHYRSRTSTHGRNMAGARALWRATGMKDGDFGKPIIAVVNSFTQ FT FVPGHVHLRDLGALVAREIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSV FT EYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPVVFVSGGPMEAGKITSPVDGKVIA FT KLDLVDAMIKAADPNVSDAEAEEVERSACPTCGSCSGMFTANSMNCLTEAIGLALPGNG FT TIVATHAWRKGLFEQAGRLVVELCRRYYEQDDASVLPRSIATKSAFENAMTLDVAMGGS FT TNTVLHLLAAAQEAGVDFTMSDIDRISRRVPCLCKAAPATDKYHIEDVHRAGGILGILG FT ELGRADLLDLSCGNVHSGTLGEAINQWDINGGAGEAAQKFFRAAPGGIPTTVAFSQDAT FT FLTLDMDRQTGCIRDKAHAYSQDGGLAVLYGNLAEKGCIVKTAGVDESQWVFTGRARVF FT ESQEDAVEGILGDRVQAGDVVIIRYEGPKGGPGMQEMLYPTSYLKSKGLGKTCALFTDG FT RFSGGSSGLVIGHASPEAAEGGTIGLVEEGDTIEIDIPNRRIHLAVGDTVLAERRAAMQ FT ARGEQAWQPVDRERVVSQALRAYAALATSADRGAVRDLSQLKR" FT misc_feature 294592..296091 FT /note="HMMPfam hit to PF00920, Dehydratase family" FT misc_feature 294766..294798 FT /note="ScanRegExp hit to PS00886, Dihydroxy-acid and FT 6-phosphogluconate dehydratases signature 1. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(296391..297593) FT /transl_table=11 FT /locus_tag="BP0290" FT /product="probable transporter" FT /note="Similar to Rhizobium loti transmembrane efflux FT protein Mlr4084 TR:Q98EU2 (EMBL:AP003003) (397 aa) fasta FT scores: E(): 8.6e-82, 64.987% id in 397 aa, and to FT Streptomyces coelicolor putative transmembrane efflux FT protein Sch24.37 TR:Q9X8V1 (EMBL:AL049826) (404 aa) fasta FT scores: E(): 2e-71, 56.566% id in 396 aa. Also similar to FT BP0940 (36.896% identity in 393 aa overlap), and to BP1608 FT (48.947% identity in 380 aa overlap)" FT /protein_id="CAE40669.1" FT /translation="MPIALWALAAGAFGIGTTEFVIMGLLPEVGADLGVSIPQAGLLVT FT GYALGVVVGAPPVAILTARLPRKTLLLGLMLIFTLGNLACALAPGYGALMAARVLTSLA FT HGAFFGVGSVVATSLVRPDKQASAIALMFTGLTLANVLGVPFGTWLGQAWGWRATFWAV FT TAVGIAAMAAIMYWVPASRGQHQADLAGELRALARPQVLLGFAMTVLGFGGVFTTFTYI FT APILTGVSGIAAAAVSPILLLFGVGLVAGNTLGGRLADRRLMPTLVGSLAVLAAVLAAF FT AWTAHHSIAAVATVALLGAAAFATVPPLQMRVLQQAGGAPNLASAFNIAAFNLGNAAGA FT WLGGLTIDHGPGLAATPLVAAAVTGGGLALALLSWSRDRRNDANQRAPALAARACESGQ FT M" FT misc_feature complement(join(296466..296531,296562..296627, FT 296667..296726,296739..296804,296844..296909, FT 296925..296990,297051..297116,297147..297212, FT 297234..297290,297321..297386,297408..297473, FT 297519..297584)) FT /note="12 probable transmembrane helices predicted for FT BP0290 by TMHMM2.0 at aa 40-62, 77-99, 106-128, 138-157, FT 164-186, 196-218, 238-260, 265-287, 300-322, 326-346, FT 359-381 and 391-413" FT CDS 297707..298588 FT /transl_table=11 FT /locus_tag="BP0291" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1859 TR:Q9I2N6 (EMBL:AE004612) FT (295 aa) fasta scores: E(): 7e-66, 59.386% id in 293 aa, FT and to Neisseria meningitidis putative LysR-family FT transcriptional regulator Nma0601 TR:Q9JW03 (EMBL:AL162753) FT (299 aa) fasta scores: E(): 7.2e-46, 45.392% id in 293 aa. FT Also similar to BP1607, 58.703% identity (58.703% ungapped) FT in 293 aa overlap." FT /protein_id="CAE40670.1" FT /translation="MPLNSDALRLFLAVVDAGSMRAAAELLGHTASGVSRGLARLEAEL FT GVTLLTRTTRRMELTEEGRQFQQKARAILLALDEAQECMRIRHQQPAGRLRVDASAPVM FT LHCLVPHVEEFSRRYPEIQLELTSNDRIVDLIEHRSDVALRAGVLSDSSLHARAFKPST FT LLVVASPAYLARHGKPRDVAALRRHRLLGFTQPETLNRWPLRHDGGSTFVVEPDIGASS FT GETLRGLALAGAGIACLSDFMLRADLASGSLVRLLESADNGYRQPLHAVYYRNTQLARR FT IACFLDFYAERM" FT misc_feature 297719..298138 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 297758..297823 FT /note="Predicted helix-turn-helix motif with score 1196 FT (+3.26 SD) at aa 18-39, sequence GSMRAAAELLGHTASGVSRGLA" FT CDS complement(join(298622..299149,299152..299961)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0292" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 270. The sequence has been checked FT and believed to be correct. Similar to Streptomyces FT glaucescens StrU TR:Q54201 (EMBL:X89010) (428 aa) fasta FT scores: E(): 4.6e-07, 33.258% id in 445 aa, and to FT Agrobacterium tumefaciens Agr_l_3299p TR:AAK90225 FT (EMBL:AE008367) (489 aa) fasta scores: E(): 1.2e-96, FT 54.505% id in 444 aa" FT /db_xref="PSEUDO:CAE40671.1" FT variation complement(299150..299153) FT /note="(AC)2 in pertussis; (AC)1 in parapertussis and FT bronchiseptica" FT CDS complement(300091..300651) FT /transl_table=11 FT /locus_tag="BP0294" FT /product="putative 5'(3')-deoxyribonucleotidase" FT /EC_number="3.1.3.5" FT /note="Similar to Homo sapiens mitochondrial 5' Dnt-2 FT TR:Q9NPB1 (EMBL:AJ277557) (228 aa) fasta scores: E(): FT 4.3e-26, 44.865% id in 185 aa, and to Mus musculus 5' Dnt FT or Nt TR:Q9JM14 (EMBL:AF078840) (200 aa) fasta scores: E(): FT 5.1e-26, 42.162% id in 185 aa, and to Staphylococcus aureus FT subspaureus Mu50. conserved hypothetical protein sav0725 FT TR:BAB56887 (EMBL:AP003360) (180 aa) fasta scores: E(): FT 1.4e-05, 29.609% id in 179 aa" FT /protein_id="CAE40672.1" FT /translation="MLILLDQDGVLADFEHAFIDAWRKRHPDIEPVAFEERKSFHIRED FT YAPELRGLAEAIYTAPGFIRDLPPVPGAVEAFRELLALGMDVRICSSPLMQFENCVAEK FT YLWVERHLGRDATQRLILTRDKTLVQGDLLIDDRPVITGAARPRWRHIIYDAPYNRDQT FT DRPRLDWRNWRNVLAGELYRSDA" FT CDS complement(300711..301661) FT /transl_table=11 FT /locus_tag="BP0295" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40673.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 300711..300742 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(300711..301763) FT misc_feature complement(300747..301280) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(301338..301403) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(301732..301763) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(301853..302113) FT /transl_table=11 FT /locus_tag="BP0296" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE40674.1" FT /translation="MVIELIYDTLDPDVAKYLKNNKPAPGIHWHRQLSEDLGARQLVSR FT CFEVVGMAKTCHSIRELRDRVAEHYGHNTVQLTLTLPRSQR" FT repeat_region 302127..302158 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 302127..303179 FT CDS 302229..303179 FT /transl_table=11 FT /locus_tag="BP0297" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40675.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 302487..302552 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 302610..303143 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(303148..303179) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(303176..304174) FT /transl_table=11 FT /locus_tag="BP0298" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2789 TR:Q9I054 (EMBL:AE004706) (359 aa) fasta FT scores: E(): 6.5e-06, 33.134% id in 335 aa, and to FT Agrobacterium tumefaciens Agr_l_258p TR:AAK88699 FT (EMBL:AE008210) (357 aa) fasta scores: E(): 0.042, 26.897% FT id in 290 aa" FT /protein_id="CAE40676.1" FT /translation="MISLSVPGGNFYLAMALSLFCLSTLLTWAVTLAANRGARRWLAAH FT RRLGPALMVLLAVAGAIFPYQHFSQWRQAQREAREQTARRAVLEAARRVDGIDMPAGTE FT LRLAEPGRLDSFQGADFPVPAHVAGLRVTRLVRHGAAPGGRQGWSVTLDGNQRIDGWLC FT SRGHQVELAVRDGTPAFAGCHLAAGNEIGGAAVPPGAWVAARQPGPWLLRTEGSDPLDV FT GRLPLLKVDMTLDDRRQVAGFEGLLARELTLGEMTYPTGTRVASAPAGLAQAQAGDLLF FT SPSRGRAARRGAGTEIVAGKSVLQAPDGTVRAVLANRDAGVLDFAAVRMAP" FT misc_feature complement(join(303980..304030,304070..304135)) FT /note="2 probable transmembrane helices predicted for FT BP0298 by TMHMM2.0 at aa 13-35 and 48-65" FT misc_feature complement(304088..304174) FT /note="Signal peptide predicted for BP0298 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.734 between residues 29 and 30" FT CDS complement(304217..304720) FT /transl_table=11 FT /locus_tag="BP0299" FT /product="MarR-family transcriptional regulator" FT /note="Similar to Rhodopseudomonas palustris FT transcriptional activatory protein BadR SW:BADR_RHOPA FT (O07458) (175 aa) fasta scores: E(): 7.3e-06, 28.873% id in FT 142 aa, and to Rhizobium loti transcriptional regulator FT Mll5432 TR:Q98BT7 (EMBL:AP003006) (156 aa) fasta scores: FT E(): 6.6e-22, 48.905% id in 137 aa" FT /protein_id="CAE40677.1" FT /translation="MIDTPDLETRAAPEDHHALRLWLRMLTCCNLIESEIRSRLRTEFD FT TTLPRFDLMAQLQRAPKGMKMGELSRHMMVTNGNITGITDQLEKEGLVVRTKVESDRRS FT SVLKLTPQGKRTFARMARAHESWVTGMLDDLPEASRHAMYKALGELKLQVVAHRALAQR FT DGAS" FT misc_feature complement(304271..304585) FT /note="HMMPfam hit to PF01047, MarR family" FT misc_feature complement(304382..304486) FT /note="ScanRegExp hit to PS01117, Bacterial regulatory FT proteins, marR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(304724..305614) FT /transl_table=11 FT /locus_tag="BP0300" FT /product="putative esterase" FT /note="Similar to Pseudomonas paucimobilis esterase FT TR:Q9APE2 (EMBL:AF305841) (284 aa) fasta scores: E(): FT 4.4e-12, 28.058% id in 278 aa, and to Pseudomonas spCA10. FT hypothetical 31.6 kDa protein TR:Q9AQQ0 (EMBL:AB047272) FT (289 aa) fasta scores: E(): 2.2e-63, 58.845% id in 277 aa" FT /protein_id="CAE40678.1" FT /translation="MAAIYRHYDRAALDVQYNARATVPDIQPILKRYAEASQQARDALP FT CTLDVPYGDHPDELLDIFPADGVRAAPVLVYIHGGYWRALNKSDSCNMAPAFTRAGALV FT VAVNYSLAPAVTLDRIVDQNRRALAWIHRHIAEYGGDPARITICGSSAGGHLVGALLAG FT GWHGQYGAPEDIVHSAAPLSGLFDLRPLVHTHINEWMRMSPADAERNSPALHMPRRGCP FT IVVSYGETETDEFKRQSDDFLRDWLALGYPGRYIPMPGTNHYDIVLTLNEPASALTQAI FT FALMGLAPPPTPSIR" FT misc_feature complement(305132..305242) FT /note="HMMPfam hit to PF00135, Carboxylesterase" FT CDS 305837..307000 FT /transl_table=11 FT /locus_tag="BP0301" FT /product="putative ABC transporter substrate binding FT protein" FT /note="Similar to Rhodopseudomonas palustris putative ABC FT transporter substrate binding protein HbaE TR:O07470 FT (EMBL:U75364) (392 aa) fasta scores: E(): 4.5e-32, 32.741% FT id in 394 aa, and to Pseudomonas spCA10. putative ABC FT transporter subunit TR:Q9AQP4 (EMBL:AB047548) (386 aa) FT fasta scores: E(): 1.7e-50, 41.237% id in 388 aa" FT /protein_id="CAE40679.1" FT /translation="MRLIPSLLAALALAPGLANADPIKVGIANDISGPFAALGAEARDG FT FNLAIKELGGKLGGQQAEFLQTDMGGNPDQARQLVTRYIQREKVDFFTGPIGSNVALAV FT GPALFAAKIPYLSNNPGPSQYAGAQCNKFWFGNSYQNDAFHEAAGKVAADRGYKKVFIM FT APDYPAGKDALTGFKRGYKTAVAEELYTKLGQIDYAAELAQIRAAKPDAVYIFLPGGMG FT INFVKQFVSTGLAQGTALVGPGFSADEDVIQAVGEPMLGMVNTAQWAHDLDVPQNKKFV FT EAFRKEYNGRYPSVYAAQAYDVIMSIDAAVKQAGGKASDRDAIVKALEQADYPSVRGSF FT TYGKNHYPIQAYYARVVEKDGSGRITNKLTGKVFDKYQDVYVGDCKL" FT misc_feature 305837..305896 FT /note="Signal peptide predicted for BP0301 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 20 and 21" FT CDS 307097..308017 FT /transl_table=11 FT /locus_tag="BP0302" FT /product="probable branched-chain amino acid transport FT system, permease component" FT /note="Similar to Rhodopseudomonas palustris putative ABC FT transporter subunit HbaF TR:O07469 (EMBL:U75364) (286 aa) FT fasta scores: E(): 1.9e-34, 45.333% id in 300 aa, and to FT Rhizobium meliloti putative permease ABC transporter FT protein smc03118 TR:CAC47554 (EMBL:AL591792) (295 aa) fasta FT scores: E(): 1.9e-22, 35.593% id in 295 aa" FT /protein_id="CAE40680.1" FT /translation="MTFTLIVEQLLNGLQFGLMLFLIAAGLTLVFGIMDIMNLAHGSLY FT MAGAYVAAETMQRTGSFTAAVLVAALATGLVGAVLELTLIRKLAVRDHLAQVLGTYAVI FT LIANDLVKMIWGPAPVMLNMPAALSGPVRLLPDLLYPAYRLMIIVFGLAAAAGLYWFVT FT RTRAGVLVRAGASNRQMATLMGVRVPLLFLGVFVLGAMLAAVAGALLGPVTAVQIGMGE FT GILILVLVCIVIGGIGSIRGAFVGALLVGMVDTAGRAFLPMLLRQVFPPAVASSVGPTL FT AAIAIYVLMAGVLVFRPAGLFPARG" FT misc_feature 307097..307252 FT /note="Signal peptide predicted for BP0302 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.761) with cleavage site FT probability 0.492 between residues 52 and 53" FT misc_feature 307112..308014 FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT misc_feature join(307130..307198,307283..307351,307388..307456, FT 307514..307582,307643..307711,307739..307807, FT 307820..307888,307916..307984) FT /note="8 probable transmembrane helices predicted for FT BP0302 by TMHMM2.0 at aa 12-34, 63-85, 98-120, 140-162, FT 183-205, 215-237, 242-264 and 274-296" FT CDS 308021..308986 FT /transl_table=11 FT /locus_tag="BP0303" FT /product="probable branched-chain amino acid transport FT system, permease component" FT /note="Similar to Rhizobium meliloti putative permease ABC FT transporter protein Smc03117 TR:CAC47555 (EMBL:AL591792) FT (330 aa) fasta scores: E(): 4.2e-27, 39.000% id in 300 aa, FT and to Agrobacterium tumefaciens Agr_l_1453p TR:AAK89305 FT (EMBL:AE008271) (335 aa) fasta scores: E(): 4.9e-28, FT 38.658% id in 313 aa" FT /protein_id="CAE40681.1" FT /translation="MHRSTLWTLALLAALALFPLVAPALGLDFYISFVRRVLIYALAAT FT SLNLILGYGGMVALGHAAFFGAGAYAVGILGAAGITSALLAWPAAIALAGALAWITGAI FT SLRTRGVYFIMITLAFAQMVYYVFISLRQYGGEDGLNLSGYSTLPGLDLANDLTFYYLV FT LVLFAVLMGVFGRVVDSRFGAALQGIRENESRMESLGYPVYRLKLTAFVISGAAAGLAG FT ALLANHNLFISPSLMHWTQSANLLIMVLVGGIGLRYGGVAGAVVMLVLEEVLRQWTEYW FT HLPLGVLLLCVVLGAPRGLVGLVGPWFAGRAGADSTRAGT" FT misc_feature 308021..308098 FT /note="Signal peptide predicted for BP0303 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.617 between residues 26 and 27" FT misc_feature join(308033..308101,308129..308197,308201..308260, FT 308270..308338,308351..308419,308477..308545, FT 308648..308716,308759..308827,308864..308932) FT /note="9 probable transmembrane helices predicted for FT BP0303 by TMHMM2.0 at aa 5-27, 37-59, 61-80, 84-106, FT 111-133, 153-175, 210-232, 247-269 and 282-304" FT misc_feature 308096..308935 FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT CDS 308983..309777 FT /transl_table=11 FT /locus_tag="BP0304" FT /product="putative branched-chain amino acid transporter, FT ATP-binding protein" FT /note="Similar to Streptomyces coelicolor putative FT branched-chain amino acid transport ATP-binding protein FT Scf42.19C TR:Q9L2J9 (EMBL:AL137165) (266 aa) fasta scores: FT E(): 9.1e-30, 43.243% id in 259 aa, and to Rhizobium FT meliloti putative branched-chain amino acid uptake ABC FT transporter ATP-binding protein Smb20785 TR:CAC49877 FT (EMBL:AL603647) (254 aa) fasta scores: E(): 1.8e-26, FT 41.057% id in 246 aa" FT /protein_id="CAE40682.1" FT /translation="MNAPAASPALRADGLVRRFGALVATDRVSLTLAPGEIHALIGPNG FT AGKSTLIHLLSGTLPADAGSLKMGERDITALNAHQRVAAGLSRSYQITNIFKSFSVLDN FT LLLAVQARAGSSFRFWRRRAAERELYDAAHELARQCAIDAGMLQRPAGTLPHGEQRKVE FT FALALAARPSVLLLDEPMAGMGPDETLRLTELIETLRGRAAMLLVEHDMQAVFRLADRI FT SVLVYGRVIATGTPEQIRANPEVRQAYLGDEEQTAALEGARC" FT misc_feature 309085..309666 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 309106..309129 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 309771..310475 FT /transl_table=11 FT /locus_tag="BP0305" FT /product="high-affinity branched-chain amino acid FT transporter, ATP-binding protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport ATP-binding protein FT LivF or B3454 SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: FT E(): 7.5e-27, 44.915% id in 236 aa, and to Alcaligenes FT eutrophus TR:P95538 (EMBL:D64144) (240 aa) fasta scores: FT E(): 7e-54, 67.521% id in 234 aa" FT /protein_id="CAE40683.1" FT /translation="MLNVNAVESGYGASQVLFGVDLEIGAGQVVTLLGRNGMGKTTLLR FT TLFGQLPLRAGSVRFAGQEIGGWSPDRIARAGLAIVPEGHQCFPNLTVREHLTAFVAAR FT NPSIGQPWTPQRVFELFPRLGERAGNMGNQLSGGEQQMLAIGRALVTNPRLLILDEATE FT GLAPKIREEIWTCLARLREAGQTILVIDKYVERLLGLADRHVILERGKVVWKGDSAALD FT ADRGLWERYLGV" FT misc_feature 309849..310400 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 309870..309893 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 310173..310217 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS join(310681..311124,311126..313027) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0306" FT /product="probable bifunctional hydroxylase/oxidoreductase FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a stop codon FT and a frameshift following codon 148. The sequence has been FT checked and believed to be correct. Similar to Azoarcus FT evansii 2-amninobenzoyl-CoA monooxygenase/reductase FT TR:AAL02071 (EMBL:AF320254) (773 aa) fasta scores: E(): FT 8.4e-206, 64.277% id in 781 aa, and to Streptomyces FT coelicolor putative bifunctional hydroxylase/oxidoreductase FT Stbac16h6.15 TR:CAC44594 (EMBL:AL596162) (801 aa) fasta FT scores: E(): 1.2e-88, 52.734% id in 768 aa" FT /db_xref="PSEUDO:CAE40684.1" FT misc_feature join(311071..311124,311126..311707) FT /note="HMMPfam hit to PF01360, Monooxygenase" FT variation 311125..311127 FT /note="TAA stop codon in pertussis; TAcgccgA (no stop FT codon) in parapertussis" FT misc_feature 311918..312937 FT /note="HMMPfam hit to PF00724, NADH:flavin oxidoreductase / FT NADH oxidase family" FT misc_feature 312173..312217 FT /note="ScanRegExp hit to PS00399, ATP-citrate lyase / FT succinyl-CoA ligases family active site." FT misc_feature 312428..312466 FT /note="ScanRegExp hit to PS00383, Tyrosine specific protein FT phosphatases active site." FT CDS join(313024..313272,313275..313817) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0308" FT /product="probable short chain dehydrogenase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 83. The frameshift occurs within a FT polymeric tract of (GC)6. The sequence has been checked and FT believed to be correct. Similar to Pseudomonas spGM101 FT beta-hydroxybutyrate dehydrogenase HbdH TR:Q9KH52 FT (EMBL:AF271714) (255 aa) fasta scores: E(): 2e-30, 45.669% FT id in 254 aa, and to Thauera aromatica putative alcohol FT dehydrogenase TR:Q9AJT0 (EMBL:AJ278289) (260 aa) fasta FT scores: E(): 3.3e-53, 63.320% id in 259 aa" FT /db_xref="PSEUDO:CAE40685.1" FT misc_feature join(313054..313272,313275..313607) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT variation 313264..313275 FT /note="(GC)6 in pertussis; (GC)5 in parapertussis" FT misc_feature 313458..313544 FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT misc_feature 313698..313790 FT /note="HMMPfam hit to PF00678," FT CDS 313839..314702 FT /transl_table=11 FT /locus_tag="BP0309" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="Similar to Azoarcus evansii putative enoyl-CoA FT hydratase/isomerase TR:AAL02065 (EMBL:AF320253) (281 aa) FT fasta scores: E(): 7.9e-79, 71.583% id in 278 aa, and to FT Rhizobium loti Mll5431 protein TR:Q98BT8 (EMBL:AP003006) FT (267 aa) fasta scores: E(): 7.8e-71, 67.407% id in 270 aa" FT /protein_id="CAE40686.1" FT /translation="MTQSEQVHTMKHHKRPYAGHAARTFQWQVSDDGKIATITLNRPER FT KNPLTFDSYAELRDLFRGLVYATDIKVVVLTGAGGNFCSGGDVHEIIGPLTRMSMPELL FT DFTRMTGDLVKAMRACPQPIVAAVDGVCAGAGAMMALASDMRLGTPAARTAFLFTRVGL FT AGADMGACTLLPRMIGQGRASELLYTGRAMNADEGLQWGFFNALHDPAELSGAALALAE FT QLAAGPTFAHGVTKKLLHQEWNMGVDEAIEAEAQAQAQAICMQTQDFRRAYDAFVARRK FT PVFEGD" FT misc_feature 313944..314465 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature 314211..314273 FT /note="ScanRegExp hit to PS00166, Enoyl-CoA FT hydratase/isomerase signature." FT CDS 314705..315874 FT /transl_table=11 FT /locus_tag="BP0310" FT /product="putative acyl-CoA dehydrogenase" FT /note="Similar to Azoarcus evansii putative acyl-CoA FT dehydrogenase TR:AAL02066 (EMBL:AF320253) (404 aa) fasta FT scores: E(): 2.7e-99, 71.318% id in 387 aa, and to Thauera FT aromatica putative acyl-CoA dehydrogenase TR:Q9AJS9 FT (EMBL:AJ278289) (388 aa) fasta scores: E(): 3e-95, 67.700% FT id in 387 aa" FT /protein_id="CAE40687.1" FT /translation="MPDLSWQDWPFFDPLHRELARELEAWCGPALAAIDHRDTDAACCA FT LVRSLGQAGWLRYAVPAGPGGGWGGRLPKIDSRAVCILRETLARHDGLADFAFAMQGLG FT SGAISLMGSDALRQQYLPPVARGEAIAAFALSEPEAGSDVAALACEARADGDGYVLNGE FT KTWISNGGIADFYCVFARTGEAPGARGISAFVVDAGTPGLEIAERIDLIAPHPLARLRF FT ADCRIPASRRLGEAGQGFKLAMMTLDIFRASVVAAALGFARRALDEGLARARGRRMFGQ FT TLADLQLTQAALGDMATAVDASALLTYRAAWMRDVQEVRTTREAAMAKMTATESAQAVI FT DRALQMFGGAGVVAGTTVERLYREIRALHIYEGATEVQKLIIARELLKS" FT misc_feature 314993..315319 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 315104..315142 FT /note="ScanRegExp hit to PS00072, Acyl-CoA dehydrogenases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 315362..315856 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS 315915..317564 FT /transl_table=11 FT /locus_tag="BP0311" FT /product="probable acid-coenzyme A ligase" FT /note="Similar to Rhodopseudomonas palustris FT benzoate-coenzyme A ligase BadA TR:Q59760 (EMBL:L42322) FT (521 aa) fasta scores: E(): 1.1e-49, 34.990% id in 523 aa, FT and to Azoarcus evansii 2-aminobenzoate-CoA ligase FT TR:AAL02069 (EMBL:AF320253) (542 aa) fasta scores: E(): FT 5.2e-121, 58.165% id in 545 aa" FT /protein_id="CAE40688.1" FT /translation="MEPSAHLDSFARDNLPPASEWPEFLLDGPDVAYPKRFNCAAELVD FT AMVRQGHGERVALRWRQDERIETMTYGQLQALTNRIARVLVEDMGLVPGNRLLLRGPNN FT PMMAAAWLGAIKAGLVTVPTMPLLRAKELRQIIEKAQVQAVLCDARLKDEALHCAAPAH FT EHYCPGLGQVMLFNDGAPDALDARAAAKPEDFPACDTAADDVCLIAFTSGTTGAPKGCM FT HFHRDVLAMCDLFPRHVIRPGPDDIFCGTPPLAFTFGLGGLLCFPLRVGASAVLAEKLS FT PDTLLALIHDFRATISFTAPTFYRQMAALAPKYDISSLRKSVSAGEALPDATRQLWRQA FT TGIEMIDGIGGTEMIHVFVSSPPEEVRQGAIGKAVPGYVAEVVDEQMRPVPNGTVGRLA FT IKGPTGCRYLADERQQRFVQQGWNLPGDTFLRDDDGYFFYQARNDDMIISAGYNIAGPE FT VEDALLRHEAVAECGVVGAPDDDRGQLVKAYVVLKPGYEPDDALAAALQAFVKAGIAPY FT KYPRAIEFVDALPRTETGKLQRFALRRMAAEG" FT misc_feature 316122..317336 FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature 316536..316571 FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 317566..318000 FT /transl_table=11 FT /locus_tag="BP0312" FT /product="probable 4-hydroxybenzoyl CoA thioesterase" FT /note="Similar to Pseudomonas SpdJ-12. 4-hydroxybenzoyl-CoA FT thioesterase FcbC TR:Q9RBQ8 (EMBL:AF051771) (142 aa) fasta FT scores: E(): 7.8e-07, 33.333% id in 132 aa, and to Bacillus FT halodurans 4-hydroxybenzoyl-CoA thioesterase Bh1999 FT TR:Q9KBC9 (EMBL:AP001514) (138 aa) fasta scores: E(): FT 3.8e-05, 26.772% id in 127 aa" FT /protein_id="CAE40689.1" FT /translation="MAEPFVSEVEVRFRHCDPAGIVFYPRYFEMINDFVEEWFDKGMGL FT PFHALHVDRHIGTPLASVQCDFSAPSRWHERLRQELSVRRIGGASFRADVRFLGPDDRL FT RLSADLTIVTVDLRSMRSTPLPDDLRARMQAFLSPQARDA" FT CDS 318025..318426 FT /transl_table=11 FT /locus_tag="BP0313" FT /product="conserved hypothetical protein" FT /note="Similar to Azoarcus evansii hypothetical 14.6 kDa FT protein TR:AAL02075 (EMBL:AF320254) (132 aa) fasta scores: FT E(): 3e-28, 55.303% id in 132 aa, and to Rhizobium loti FT Mll5429 protein TR:Q98BU0 (EMBL:AP003006) (137 aa) fasta FT scores: E(): 3.2e-31, 62.879% id in 132 aa" FT /protein_id="CAE40690.1" FT /translation="MKILQPPDWLAPRGYSNGTLTEMAVGSKLVFVGGQVGWNGQQQFE FT TDDFAEQVRQTLVNVLAIMAEGGAGPQHIVRMTWYVKNKAEYVASYPEIGKHYRELIGR FT HFPAMTAVEVADLIEDRAKVEIEVTAVIP" FT misc_feature 318046..318420 FT /note="HMMPfam hit to PF01042, YjgF family" FT CDS complement(318520..320145) FT /transl_table=11 FT /locus_tag="BP0314" FT /product="conserved hypothetical protein" FT /note="Similar to Vibrio cholerae hypothetical protein FT Vca1085 TR:Q9KKL8 (EMBL:AE004434) (556 aa) fasta scores: FT E(): 3.5e-23, 27.632% id in 456 aa, and to Thermotoga FT maritima conserved hypothetical protein Tm0735 TR:Q9WZJ4 FT (EMBL:AE001744) (455 aa) fasta scores: E(): 2.1e-13, FT 30.947% id in 475 aa" FT /protein_id="CAE40691.1" FT /translation="MTIANALQLELDEATCVLSAAYAPTGENDTLPTWDTLVAAVQARG FT WPATVLDQISAIVFIEQCRDTAGPVEACIGEVRNGTFELEVAEDRMSAQLTLRAPKGGQ FT PVGESDLLAGLQAHGIVHGLIPEALRQALERGACEALEIARGTLPEAGEPARFESLLDA FT LKTRLSEDDENAIIDYRNLGDLTLVSAGTPLMRRIPATPGQPGTNVLGGPVAPPAVADP FT PFAPKLNGVEVDPEDPGLLRAAIAGSPMLVQHGATVNSLVEVPAVDLSSGNIDFEGTLR FT VKGDITAGMHVRVSGDVVVNGTIEAAHVEAGGNVTVNGGIIGSAEGVADSRGGSRMARI FT VSGGSVKARFIDNAQVRAEKNVAAEREIRQSTVTAGETITVGPPGSQQGVITGGTAHAY FT KSVHAGTLGSMAGIPTVVRAGLNPHANAKRAALETRARELEEEKAKLEKLILFLHNNPA FT KNVNNMSERARQTHAKISADLVELQAEDARLAKELQPLETAMIVASRRFFGGVTLHLGV FT KVTEFLEDQVGGKAVLEQGELAIR" FT misc_feature complement(319474..319494) FT /note="ScanRegExp hit to PS00092, N-6 Adenine-specific DNA FT methylases signature." FT CDS complement(320385..321668) FT /transl_table=11 FT /gene="hemL" FT /gene_synonym="gsa" FT /gene_synonym="popC" FT /locus_tag="BP0315" FT /product="glutamate-1-semialdehyde 2,1-aminomutase" FT /EC_number="5.4.3.8" FT /note="Similar to Escherichia coli glutamate-1-semialdehyde FT 2,1-aminomutase HemL or Gsa or PopC or B0154 SW:GSA_ECOLI FT (P23893) (426 aa) fasta scores: E(): 6.9e-94, 60.094% id in FT 426 aa, and to Neisseria meningitidis FT glutamate-1-semialdehyde 2,1-aminomutase HemL or Nma0592 FT SW:GSA_NEIMA (Q9JW10) (427 aa) fasta scores: E(): 3.1e-105, FT 65.808% id in 427 aa" FT /protein_id="CAE40692.1" FT /translation="MSTNAELFDRACRSIPGGVNSPVRAFRSVGGTPRFIQRAQGPYVW FT DAEGKQYIDYVGSWGPAILGHAHPEVVRAVQEAAVHGLSFGAPTEAEVELAEMLIARLP FT SLEQVRLVSSGTEATMTAIRLARGATGRHKIIKFEGCYHGHSDSLLVKAGSGLLTFGNP FT SSAGVPPEFVAHTLTLEFNNLAVVDAAFSQHGAEIACVIVEPVAGNMNLIKPAEGFLAG FT LRELCTRHGAVLIFDEVMTGFRIGPQGVQGLTGVRPDLTTLAKVIGGGMPVGAFGGRAD FT LMTHIAPLGGVYQAGTLSGNPVAVAAGLATMRLIGEPGFYERLSAQTARLAQGLQERAR FT AAGVPFSADAIGGMFGLYFGDRVPASFAEVSACDTEAFKRFFHAMLERGIHFAPSAFEA FT GFVSATHDDAVIDATLEAAEQVFATLRA" FT misc_feature complement(320457..321548) FT /note="HMMPfam hit to PF00202, Aminotransferase class-III" FT misc_feature complement(320859..320969) FT /note="ScanRegExp hit to PS00600, Aminotransferases FT class-III pyridoxal-phosphate attachment site." FT CDS complement(321685..322338) FT /transl_table=11 FT /gene="thiE" FT /locus_tag="BP0316" FT /product="thiamine-phosphate pyrophosphorylase" FT /EC_number="2.5.1.3" FT /note="Similar to Escherichia coli thiamine-phosphate FT pyrophosphorylase ThiE or B3993 SW:THIE_ECOLI (P30137) (211 FT aa) fasta scores: E(): 4.3e-12, 37.811% id in 201 aa, and FT to Xylella fastidiosa thiamin-phosphate pyrophosphorylase FT Xf0378 TR:Q9PGC4 (EMBL:AE003889) (234 aa) fasta scores: FT E(): 5.2e-25, 43.062% id in 209 aa" FT /protein_id="CAE40693.1" FT /translation="MKTLRFPAGLYGITPEWDDTDRLLAAVRAAAAGGMTALQLRRKLA FT DERLRAAQARALAPLCRELGVVFLVNDHWKLALDVGADGAHLGRDDADPATVRAQAGAG FT LLLGVSCYNDLRRADALLAAGADYVAFGTVFASPTKPEAVHAPLQTLTEARARVLACPA FT PRPAVVAIGGITPANVSQVAQAGADSAAVISGLFEAPDIQAAARACAAAFSVNP" FT misc_feature complement(321751..322179) FT /note="HMMPfam hit to PF02581, Thiamine monophosphate FT synthase/TENI" FT CDS complement(322335..323183) FT /transl_table=11 FT /gene="thiD" FT /locus_tag="BP0317" FT /product="phosphomethylpyrimidine kinase" FT /EC_number="2.7.4.7" FT /note="Similar to Escherichia coli phosphomethylpyrimidine FT kinase ThiD or B2103 SW:THID_ECOLI (P76422) (266 aa) fasta FT scores: E(): 0.0004, 24.255% id in 235 aa, and to FT Pseudomonas aeruginosa phosphomethylpyrimidine kinase ThiD FT or Pa3975 TR:Q9HX41 (EMBL:AE004815) (265 aa) fasta scores: FT E(): 3.6e-12, 31.298% id in 262 aa" FT /protein_id="CAE40694.1" FT /translation="MRPDYPFFAVVPVLDSVTPPLVLIIGPVDPSGADGLPADAVSCAR FT LGCHALAAVTALTVQDTAGIEEVHPVAPELLDDQARCLLEDMSVQAIKVGALLSAEAAS FT VAAQIAADYSHVPLVLHLGQRTPLPQDAADQDDADDLLAATLELVLPQTDLVVVEHVRL FT AQWQADGSIDTSGAPSPAHALLAGGAQWALVLGSPARPGHQVNMLVGPEGQTSTWPWQA FT PPDRNGDTGGVAAIAAAAMLAQGMEMPRAVEQALAHAERTIAASFLPGMGRRLPNRVAQ FT S" FT CDS 323300..323464 FT /transl_table=11 FT /gene="rubA" FT /locus_tag="BP0318" FT /product="rubredoxin" FT /note="Similar to Acinetobacter calcoaceticus rubredoxin FT RubA SW:RUBR_ACICA (P42453) (54 aa) fasta scores: E(): FT 1.2e-15, 55.556% id in 54 aa, and to Pseudomonas aeruginosa FT rubredoxin Pa5350 TR:Q9HTK8 (EMBL:AE004947) (55 aa) fasta FT scores: E(): 6.2e-16, 62.963% id in 54 aa" FT /protein_id="CAE40695.1" FT /translation="MRTWMCLICGWVYDEEAGLPDEGIAPGTRWEDVPPNWVCPECGAR FT KEDFELMEI" FT misc_feature 323300..323446 FT /note="HMMPfam hit to PF00301, Rubredoxin" FT misc_feature 323396..323428 FT /note="ScanRegExp hit to PS00202, Rubredoxin signature." FT CDS 323552..324157 FT /transl_table=11 FT /locus_tag="BP0319" FT /product="putative transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa AlgH or Pa0405 FT TR:Q9RQ16 (EMBL:AF137022) (189 aa) fasta scores: E(): FT 2.9e-31, 49.730% id in 185 aa, and to Neisseria FT meningitidis hypothetical protein Nma1550 TR:Q9JU12 FT (EMBL:AL162756) (182 aa) fasta scores: E(): 7.6e-30, FT 43.407% id in 182 aa" FT /protein_id="CAE40696.1" FT /translation="MTDSHRPDADDIPDDDELSTDFSNQFLLAMPGVVEGSLAGTVIYI FT CEHTRRGALGLVINRPTDLTLATLFERIDLKLEIGPVKDEMVFFGGPVQTDRGFVLHAP FT AGDYTSSINLGELALTTSRDVLQAVADGNGPARMLVTLGYAGWGAGQLESEMAQNSWLS FT VGADSHIIFDVAPEDRYPAALKLLGVDPVMLAGGAGHA" FT misc_feature 323609..324154 FT /note="HMMPfam hit to PF02622, Uncharacterized ACR, FT COG1678" FT CDS 324150..324551 FT /transl_table=11 FT /locus_tag="BP0320" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical protein FT YqgF or B2949 SW:YQGF_ECOLI (P52050) (138 aa) fasta scores: FT E(): 1.9e-19, 47.727% id in 132 aa, and to Pasteurella FT multocida hypothetical protein Pm1870 TR:Q9CJX0 FT (EMBL:AE006224) (140 aa) fasta scores: E(): 6.2e-17, FT 43.182% id in 132 aa" FT /protein_id="CAE40697.1" FT /translation="MPEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGR FT IGQLLQEWQPQRAVVGLPLTLDGQEQPASARARRFANQLHGHFGLAVELVDERSSSMEA FT QQLLGTHADDDAVAAAVILQRYLDTLSQP" FT CDS 324565..325518 FT /transl_table=11 FT /gene="pyrB" FT /locus_tag="BP0321" FT /product="aspartate carbamoyltransferase" FT /EC_number="2.1.3.2" FT /note="Similar to Pseudomonas putida aspartate FT carbamoyltransferase PyrB SW:PYRB_PSEPU (Q59711) (334 aa) FT fasta scores: E(): 6.5e-77, 64.821% id in 307 aa, and to FT Pseudomonas aeruginosa aspartate carbamoyltransferase PyrB FT or Pa0402 SW:PYRB_PSEAE (Q59653) (334 aa) fasta scores: FT E(): 2.7e-78, 66.234% id in 308 aa" FT /protein_id="CAE40698.1" FT /translation="MLNPQLNRHGELIHLLSTEGLPRRIIEQILDLAATFVPAPGQEFP FT KLPLLHGKSVFNLFFENSTRTRTTFEIAAKRLSADVVNLNIAASSTSKGESLLDTIANL FT SAMQADLFVVRHGASGAPYLIAQHVAPHVHVINAGDGRHAHPTQALLDMYTIRHHKGDF FT NQLTVAIVGDVLHSRVARSDIHALTTLGVPEVRVVAPATLLPEGLAQMGVRVCTDMEEG FT LRDADVVIMLRLQNERMRGALLPSAHEYFKHYGLTQARLALARPDAIVMHPGPMNRGVE FT IASEVADSGQAVILDQVTFGIAVRMAAMSLVAGVRP" FT misc_feature 324604..325044 FT /note="HMMPfam hit to PF02729, Aspartate/ornithine FT carbamoyltransferase, carbamoyl-P binding domain" FT misc_feature 324739..324762 FT /note="ScanRegExp hit to PS00097, Aspartate and ornithine FT carbamoyltransferases signature." FT misc_feature 325051..325503 FT /note="HMMPfam hit to PF00185, Aspartate/ornithine FT carbamoyltransferase, Asp/Orn binding domain" FT CDS 325515..326690 FT /transl_table=11 FT /gene="pyrC" FT /gene_synonym="pyrC'" FT /gene_synonym="pyrX" FT /locus_tag="BP0322" FT /product="dihydroorotase" FT /note="Similar to Pseudomonas aeruginosa FT dihydroorotase-like protein PyrC' or PyrX or Pa0401 FT SW:PYRX_PSEAE (Q51551) (423 aa) fasta scores: E(): 5.5e-50, FT 44.041% id in 386 aa, and to Pseudomonas putida FT dihydroorotase-like protein PyrC' SW:PYRX_PSEPU (Q59712) FT (424 aa) fasta scores: E(): 2.5e-49, 42.674% id in 389 aa" FT /protein_id="CAE40699.1" FT /translation="MTVRTVRIAGGRLIDPASGADARADLYLADGRIAAIGQAPAGFQA FT QQHIDARGLAVLPGLVDLSARVHGAGLAPLACEMQAALAGGVTRLVVPPDTDPPLDEPG FT RVEMLRHRAHQAGQAQLHPLGALTEGLRGERLSEMAALAEAGCVAFSQAGLPVADTRVL FT WRAMQYARTFGLALWLRPLDPWMGRDGVAAAGAYASRLGLAEVPVQAETLALHTIFELQ FT RATGARVHLMRLSSAAGVALVRAARREGLPLTCDVAAHQIHLTDVDIGFFDSRFRLDPP FT LRGQRDRDAIVAGLADDTIDAICSDHRPVGDTGKLLPFAEAEAGASGLELLLSLTLKWA FT QRERVPLARALALVTSAPAAILRAATAAPPPCGELAAGAPADLCLVDLDAD" FT misc_feature 325653..326684 FT /note="HMMPfam hit to PF00744, Dihydroorotase-like" FT CDS 326810..327550 FT /transl_table=11 FT /locus_tag="BP0323" FT /product="acyltransferase" FT /note="Similar to Neisseria gonorrhoeae FT 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC FT SW:PLSC_NEIGO (Q59601) (255 aa) fasta scores: E(): 5.3e-21, FT 33.862% id in 189 aa, and to Burkholderia pseudomallei FT putative 1-acyl-sn-glycerol-3-phosphate acyltransferase FT PlsC TR:O69114 (EMBL:AF064070) (289 aa) fasta scores: E(): FT 6.4e-25, 34.694% id in 245 aa" FT /protein_id="CAE40700.1" FT /translation="MKLLRFVFRVFLVVPWVLFGLLCVTLVYRGLRQDQRARLNRCWSA FT CLMRLCGIAVHVRGAPRLRGGVLWVANHVSWIDIFVVNSVRATSFVAKSEIRAWPVIGY FT LAAGAGTLFIDRTQRHAVHAMGQSIHDCFARGDAVGLFPEGTTTEGFTTRPFHASLFEP FT ARAEGVDIQPVALRFMHRGQRSGFAAFVGEETLVANLWRVLGTTGLAVEVVFLEPLPTQ FT HAEGHQPTRLELSHMVRNAIAGEL" FT misc_feature 326828..326896 FT /note="1 probable transmembrane helix predicted for BP0323 FT by TMHMM2.0 at aa 7-29" FT misc_feature 326978..327520 FT /note="HMMPfam hit to PF01553, Acyltransferase" FT CDS complement(327587..328420) FT /transl_table=11 FT /gene="apaH" FT /locus_tag="BP0324" FT /product="diadenosine-tetraphosphatase" FT /EC_number="3.6.1.41" FT /note="Similar to Escherichia coli FT bis(5'-nucleosyl)-tetraphosphatase ApaH or B0049 FT SW:APAH_ECOLI (P05637) (280 aa) fasta scores: E(): 6.3e-42, FT 40.221% id in 271 aa, and to Burkholderia pseudomallei FT bis(5'-nucleosyl)-tetraphosphatase ApaH SW:APAH_BURPS FT (O69115) (282 aa) fasta scores: E(): 1.5e-63, 56.767% id in FT 266 aa" FT /protein_id="CAE40701.1" FT /translation="MKGNIWTIGDVQGCCAPLAELLAHPEIAGDTDSRFWFAGDLVNRG FT PQSLAVLRRIMAMGERCTAVLGNHDLHLLAAYAGVRKPSKSDTLDEVLQAPDAVDLIDW FT LRFRPLAHYEAGHLMVHAGVLAKWDVAKTLALAGEVEQALRGPNWRKALQKMYGNEPAT FT WKDDHTGGKRMRVIINALTRIRLCTPSGHMEFATKVAPGAWPAGLVPWFDVPNRATRDV FT TVVFGHWSTLGLLMRPDVICLDTGCVWGGALSALRLHDRKLVQVKCKRFQDPNGD" FT CDS complement(328417..329595) FT /transl_table=11 FT /locus_tag="BP0325" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3827 TR:Q9HXH5 (EMBL:AE004800) (355 aa) fasta FT scores: E(): 3e-11, 28.212% id in 358 aa, and to Vibrio FT cholerae hypothetical protein Vc2499 TR:Q9KP76 FT (EMBL:AE004319) (356 aa) fasta scores: E(): 9.1e-10, FT 25.956% id in 366 aa" FT /protein_id="CAE40702.1" FT /translation="MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDKFSM FT LALFYMQALALPTRLYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWV FT ITIPLMIGATLLSEFVTPAAEIKSGEADLTFRGKTGGGRLNSGYWFKEPTPQNGTRIIN FT IKTLLADGQVKDVTLYEFRSDLEMTALWTAPNGRFSRGDLVLTDVSETRIDEHAPSALA FT DAKQPKEPPARVTKVPELKLDTTLSPERLLARVLTPERMSALTLVDYIEYLRHNQLQYD FT RQVVALWRKLVYPFTLLVMITIAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALN FT VGMLSRWPPWITALGPNLGALLLAFGALSMMEYRHAIARFMQHRWPWRKVPA" FT misc_feature complement(join(328483..328548,328579..328644, FT 328666..328722,329275..329340,329356..329421, FT 329497..329562)) FT /note="6 probable transmembrane helices predicted for FT BP0325 by TMHMM2.0 at aa 41-63, 88-110, 115-137, 321-340, FT 347-369 and 379-401" FT misc_feature complement(329497..329595) FT /note="Signal peptide predicted for BP0325 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 33 and 34" FT CDS complement(329692..330363) FT /transl_table=11 FT /gene="mtgA" FT /locus_tag="BP0326" FT /product="monofunctional biosynthetic peptidoglycan FT transglycosylase" FT /EC_number="2.4.2.-" FT /note="Similar to Escherichia coli monofunctional FT biosynthetic peptidoglycan transglycosylase MtgA or B3208 FT SW:MTGA_ECOLI (P46022) (242 aa) fasta scores: E(): 6.1e-24, FT 39.623% id in 212 aa, and to Neisseria gonorrhoeae FT monofunctional biosynthetic peptidoglycan transglycosylase FT MtgA SW:MTGA_NEIGO (Q51005) (233 aa) fasta scores: E(): FT 3.8e-33, 44.495% id in 218 aa" FT /protein_id="CAE40703.1" FT /translation="MAVLCIAILYQLWMFSLVVWYAYRDPGSSAIMRQELARLRERDPE FT AELKYQWVPYDRISNTLKQAVVASEDANFTEHDGVEWDAIRKAWEYNQRQAERGRTKMR FT GGSTITQQLAKNLFLSGSRSYLRKGQELVLAYMIEHVMPKERILELYLNVAEWGVGVFG FT AEAAARHYYNTSAARLGAGQAARLAAMLPNPRYYDRHRNTGYLNSRTATLTRRMRMVEI FT P" FT misc_feature complement(329752..330276) FT /note="HMMPfam hit to PF00912, Transglycosylase" FT misc_feature complement(330322..330387) FT /note="1 probable transmembrane helix predicted for BP0326 FT by TMHMM2.0 at aa 46-68" FT repeat_region 330441..330472 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 330441..331493 FT CDS 330543..331493 FT /transl_table=11 FT /locus_tag="BP0327" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40704.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 330801..330866 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 330924..331457 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(331462..331493) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(331490..331864) FT /transl_table=11 FT /locus_tag="BP0328" FT /product="conserved hypothetical protein" FT /note="Similar to Bacillus halodurans Bh0200 protein FT TR:Q9KGB0 (EMBL:AP001507) (107 aa) fasta scores: E(): 3.3, FT 30.108% id in 93 aa, and to the N-terminal region of Vibrio FT cholerae UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase FT Vc0918 TR:Q9KTI4 (EMBL:AE004175) (413 aa) fasta scores: FT E(): 8.2, 26.126% id in 111 aa. Also similar to BP0934, FT 48.598% identity (48.598% ungapped) in 107 aa overlap." FT /protein_id="CAE40705.1" FT /translation="MNAMPRHKLVVLTNPVEGREQEFDDWYMNTHMPDVMRVPGFVSGQ FT RFTWAHAQAKPHAQTWRYLTILEIDTDDLQATLDDLMARPGTAAMRMSDALAEQRLAYV FT FTAATPVFAPDGAGGITLRD" FT CDS complement(331861..333540) FT /transl_table=11 FT /locus_tag="BP0329" FT /product="putative coenzyme A ligase" FT /note="Similar to Pseudomonas diterpeniphila coenzyme A FT ligase TdtL TR:AAK95584 (EMBL:AF274704) (543 aa) fasta FT scores: E(): 3.2e-55, 36.813% id in 546 aa, and to FT Streptomyces griseus subspgriseus NonL TR:O85737 FT (EMBL:AF074603) (555 aa) fasta scores: E(): 4.4e-53, FT 35.754% id in 537 aa. Also similar to BP0930, 60.517% FT identity (61.308% ungapped) in 542 aa overlap." FT /protein_id="CAE40706.1" FT /translation="MKQTQPTPPAAAIDVHAAFGEMRHWTTGHIVARRAALSGSQTFLR FT NMADGRCHTYLDLHRQTNGIAQALAALGIGHGDHVAVMLENCPEQVFSYVALGKLGAVS FT VPINTAAKGQLLRYYLDHADCTAIVVSDTLAAPLADIIAALPRLQRVIVLGQARAAAAG FT LPDGVAVHPFPDVDGSDAAPRVPVRFDDLAYLLYTSGTTGPSKAIMITHACAHFWGEQN FT IRYRHFLPGEVDYVFLPLFHANALLLGVTSALMAGTTVALARRFSTSRFWSDVRTAGAT FT RFNAIGAVGNFLYSQPPDPRDRDHKVRLCSLAPPPPFVHDFERRFGIKVLNGYALSDYC FT AATWSPLDAPPQKVFSAGLARDSVRVRIVDDDDFDLPADSPGEILLRVEQPWGTPLGYY FT KMPEATLAAHRNGWFHTGDRGRLDADGYLHFTDRKKDAIRRRGENISAYEVEAIILGHP FT AVRQAAVYPVRSEFTEDEVAASIVLHDGQALTPEALVLHCRDNMSSFMVPRFVEFVAEL FT PLTLTNKVEKYKLRARAEADPAALWDSQQHAGGTARAAATGG" FT misc_feature complement(332146..333381) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature complement(332923..332958) FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature." FT CDS complement(333550..334566) FT /transl_table=11 FT /locus_tag="BP0330" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas chlororaphis hypothetical FT 35.8 kDa protein TR:Q9L3W5 (EMBL:AJ271325) (336 aa) fasta FT scores: E(): 4e-24, 30.380% id in 316 aa, and to Rhizobium FT meliloti conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 1.3e-23, FT 31.288% id in 326 aa" FT /protein_id="CAE40707.1" FT /translation="MKPMPVHRAGAAGPDAVRRSLLAAIPGLMLGAVARAQPAAYPAHR FT VTLLVPYTAGTAADAVARFIAAKLTALWGTTVLVENKAGADGVVGTRAVLQAPADGHMV FT LFTGPPFLYNTEMLQTAPYVPLRDFQPVARVSSAMWLFAAGRQAPFANLAELIALDKRQ FT GRAADIAVSGSAAMAVATALKNATGARLNIVPYTSTSQAITDAAAGHVDAVAAAIAGVA FT PLVRSGMLNALGVSGPTRSLAVPEIPTLAEAGAPGFGFVSWNAAFVRSGTPEAAIARLA FT EGMGAVAASAEFREFAREQGVEPAFMGPDAWPAEAADQQARWSGLLREAGLIKPKQG" FT CDS complement(334579..334992) FT /transl_table=11 FT /locus_tag="BP0331" FT /product="conserved hypothetical protein" FT /note="Similar to Methanococcus jannaschii hypothetical FT protein Mj1552 TR:Q58947 (EMBL:U67596) (141 aa) fasta FT scores: E(): 4.3e-07, 36.842% id in 95 aa, and to FT Archaeoglobus fulgidus conserved hypothetical protein FT TR:O29957 (EMBL:AE001085) (165 aa) fasta scores: E(): FT 2.2e-06, 25.424% id in 118 aa. Also similar to BP0932, FT 50.400% identity (50.806% ungapped) in 125 aa overlap." FT /protein_id="CAE40708.1" FT /translation="MNIENPAPILDQDPYVQAYPETRAFWEAAAQGRFVLPRCRDCGQS FT HWYPRGLCPLCGSTALEWQDAAGTGTLYSYSVMRAAPQPYAIAYVQLAEGPLVLTNIVD FT SDLERLRIGQPVRVAFQRTQEGRSAPVFVALAD" FT misc_feature complement(334591..334932) FT /note="HMMPfam hit to PF01796, Domain of unknown function FT DUF35" FT CDS complement(334989..336185) FT /transl_table=11 FT /locus_tag="BP0332" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1016 TR:Q9I4V7 (EMBL:AE004534) (383 aa) fasta FT scores: E(): 3.6e-43, 40.874% id in 389 aa, and to FT Rhodococcus spNCIMB 9784 non-specific lipid carrier-like FT protein CampC TR:AAK50624 (EMBL:AF323755) (408 aa) fasta FT scores: E(): 7.9e-30, 31.807% id in 393 aa. Also highly FT similar to BP0933, 80.964% identity (81.378% ungapped) in FT 394 aa overlap." FT /protein_id="CAE40709.1" FT /translation="MGGEQRETNLSIRGKAYIVGAFEHPLRYAPAHSVAQLHAECALGA FT LADAGLTLADVDGYFCAGDAGASPATLVDHMNLRLRHVDGTEIGGGSYLALIGHAAQAI FT ASGKCRVALITLAGKPRSAGQATGTEARQPGPDRPASAWEAPYRWTVAGIYGNFARRHM FT HEYGTTSEQLAWVKVAASHHAQHNEHALLRKVYSVEDVLASPMIADPLHRLDCCVITDG FT GGALVLAAPEVARSLARPRIRVLGCGETIRTNNGGHHADMLHTGAQRSGPAAFAEAGVT FT PADIKYASVYDNFTIMVIMQLEDLGFCEKGAGGRFVADGNLISGTGRLPWNTDGGGLCN FT NHPANRGGITKAIEAVRQLRGEAHPSVQVPNCDLALAAGPGLVFGVGHSHATVILERE" FT CDS complement(336272..337156) FT /transl_table=11 FT /locus_tag="BP0333" FT /product="metallo-beta-lactamase family protein" FT /note="Similar to Alteromonas carrageenovora arylsulfatase FT precursor AtsA or Ats SW:ARS_ALTCA (P28607) (328 aa) fasta FT scores: E(): 8.2e-09, 27.541% id in 305 aa, and to FT Caulobacter crescentus metallo-beta-lactamase family FT protein Cc1176 TR:Q9A918 (EMBL:AE005795) (317 aa) fasta FT scores: E(): 6.4e-13, 29.097% id in 299 aa" FT /protein_id="CAE40710.1" FT /translation="MNLWLLGTGTPTPSLWRMCSGYLVRVGDEYLVFDHGFGAHHRMLE FT LGVRATQVSHAFFSHHHYDHMGDYPRLLLTRWDQGVGRIDDMDVYGPPPLKLITERLIG FT DDGAFGPDLISRTENQCSIDVYQARGGTGMRARPQPHLHELAADAVVRTPGWTVRVAPV FT NHFAPHLVSYGYRLDADGQSFVYSGDTGPSRALRELAQDCDVLVHMCHYVSGTAPSKTF FT AAFTMGHRELAELAAEANVRNLVISHVTEQFDHPGMRERIVREVGEIYRGNIFFGEDGM FT EIPFAGPRQTRLD" FT misc_feature complement(336470..337117) FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily" FT CDS complement(337169..338164) FT /transl_table=11 FT /locus_tag="BP0334" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1.3e-37, 41.176% id in 323 aa, and to Pseudomonas putida FT hypothetical 34.5 kDa protein in clcB-clcD intergenic FT region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta FT scores: E(): 8.8e-35, 38.816% id in 304 aa" FT /protein_id="CAE40711.1" FT /translation="MQHLHRPTRLMGAIAIITTAFALAGVPAQAGAAPSDQPLRIVVPY FT APGGTGDVIARLVAKKLGEQSGQSVVVENKPGAAGSIGASTVARAAADGNTLLLGYTSE FT MVINPIVQKGVSYDVARDFAPVALAGSTPLLLVANPTVGVNSIAELVALAKAKPNRLSY FT ASAGPGSPAHIAGALLAREAGIQLLHVPYKGGSQAVTDTVGGVVSIYFSGMPPAVPFVK FT NGKLTALGVTARQPSPALPDVPALAAQDYPRLDLAGWFGFFAPREVPAPVQAALHDRIT FT AALAADDIRQALAVQGVETRPMSAQAFGDFVAAEQKKYARFIDELGIAAE" FT misc_feature complement(338069..338134) FT /note="1 probable transmembrane helix predicted for BP0334 FT by TMHMM2.0 at aa 45-67" FT misc_feature complement(338069..338164) FT /note="Signal peptide predicted for BP0325 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.606 between residues 32 and 33" FT CDS join(338269..338472,338471..338971) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0335" FT /product="LysR-family transcriptional regulator FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 68. The frameshift occurs within a FT dimeric tract of (CG)2. The sequence has been checked and FT believed to be correct. Similar to Pseudomonas aeruginosa FT probable transcriptional regulator pa2206 TR:Q9I1R1 FT (EMBL:AE004647) (315 aa) fasta scores: E(): 1.8e-12, FT 30.516% id in 213 aa, and to Rhizobium meliloti putative FT transcriptional activator of the pca operon, lysr family FT protein TR:CAC49892 (EMBL:AL603647) (313 aa) fasta scores: FT E(): 1.5e-10, 30.435% id in 207 aa" FT /db_xref="PSEUDO:CAE40712.1" FT misc_feature join(338317..338472,338471..338746) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 338359..338451 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT variation 338469..338472 FT /note="(CG)2 in pertussis; (CG)3 in parapertussis" FT variation 338912..338914 FT /note="There is a large insertion in parapertussis and FT bronchispetica, relative to pertussis, following this FT codon" FT CDS 339025..339855 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0336" FT /product="putative exported protein (pseudogene)" FT /note="Pseudogen. The N-terminal region of this CDS is FT deleted relative to its orthologues in B. pertussis and B. FT bronchiseptica. Similar to the C-reminal regions of FT Rhizobium meliloti conserved hypothetical protein Sma0690 FT TR:AAK65024 (EMBL:AE007228) (466 aa) fasta scores: E(): FT 2.3e-08, 28.617% id in 311 aa, and to Escherichia coli FT hypothetical protein YacH or B0117 SW:YACH_ECOLI (P36682) FT (617 aa) fasta scores: E(): 8.7e-11, 30.357% id in 280 aa" FT /db_xref="PSEUDO:CAE40713.1" FT CDS 339852..340682 FT /transl_table=11 FT /locus_tag="BP0337" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical 34.3 kDa FT protein Sma0689 TR:AAK65023 (EMBL:AE007228) (316 aa) fasta FT scores: E(): 4.7e-14, 32.971% id in 276 aa" FT /protein_id="CAE40714.1" FT /translation="MSMHNKHSMVRRALGALALAWATAGAAMAQAPYPTAQAAGDALVD FT AIATSDDVAMARVLGANYRQVFPAGDHTQAIYRFLAAWADRHDIQSEGDRRAWLAVGLS FT GWTFPVPMARGGQGQWRFDLQAGVAEMRRRTIGRNELVAIDGVRQLVQAQARYAQGPGQ FT GRYASRLVSRPEHRDGLYWPAADQADAPPFGPDALAMGADTPLDQAYAGYRFRVEAAPD FT GKDFRVVAWPAQYRRSGVYTFAADASGQVLQRDLGGAGAVGMRTDLAGWQPVAQ" FT misc_feature 339852..339938 FT /note="Signal peptide predicted for BP0337 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.980 between residues 29 and 30" FT misc_feature 339888..339956 FT /note="1 probable transmembrane helix predicted for BP0337 FT by TMHMM2.0 at aa 13-35" FT CDS complement(340692..341834) FT /transl_table=11 FT /locus_tag="BP0338" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE40715.1" FT /translation="MYRTDRLYSPPAWPVTRWLADPGRNVPDDIRQALLGGLFGTISIF FT VGGVLNSVLVALIIAIRLPQAPFIAWLAFELACCLARAVVLVSARRAAAAGRPTHTDAY FT IVLTVLWSCSVGYGTLISVASGDWVAAILACLSAAAMVGGICFRNFSAPRLTALMICVS FT LGPCTTLPWFTGEHSLWIVSVQLPLYLASMTVAAYRFNRMLVATMQAERDSDRLARCDA FT LTGLMNRFGLGFALERAVAATRRDGNEFALLYLDLDGFKSVNDTHGHAAGDRLLRDVAA FT RLTELAPADAAIARIGGDEFVLLVRDCDEACATALGDRIVARICELYDLGTPRPVRIGG FT SVGIALVPRHGQEMTAILKAADRALYLAKSAGKSRTALAA" FT misc_feature complement(340710..341204) FT /note="HMMPfam hit to PF00990, GGDEF domain" FT misc_feature complement(join(341235..341300,341313..341369, FT 341385..341450,341463..341528,341568..341633, FT 341664..341729)) FT /note="6 probable transmembrane helices predicted for FT BP0338 by TMHMM2.0 at aa 35-57, 67-89, 102-124, 128-150, FT 155-174 and 178-200" FT misc_feature complement(341424..341468) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS complement(341929..342516) FT /transl_table=11 FT /gene="ogt" FT /locus_tag="BP0339" FT /product="methylated-DNA--protein-cysteine FT methyltransferase" FT /EC_number="2.1.1.63" FT /note="Similar to Escherichia coli FT methylated-DNA--protein-cysteine methyltransferase Ogt or FT B1335 SW:OGT_ECOLI (P09168) (171 aa) fasta scores: E(): FT 1e-25, 42.857% id in 168 aa, and to Caulobacter crescentus FT methylated-DNA--protein-cysteine methyltransferase Cc0689 FT TR:Q9AAB5 (EMBL:AE005744) (220 aa) fasta scores: E(): FT 2.5e-30, 53.254% id in 169 aa" FT /protein_id="CAE40716.1" FT /translation="MRGTRAPHTVKAPSNQERIMQFFQAQLESPLGALSLVTDDRQQVR FT ALEFADSPQRLQRLLHLHYGTYTLREAPAPAAIVTALAHYFSGQCDALDGIATATGGSA FT LQQRVWQALRRIPAGEVTSYGALARQLGHDDRQAARAIGGANAANPIALIVPCHRVIGK FT DGALKGYAWGLERKRWLLAHENAAAGLLREAG" FT misc_feature complement(341950..342291) FT /note="HMMPfam hit to PF01035, 6-O-methylguanine DNA FT methyltransferase, DNA binding domain" FT misc_feature complement(342034..342054) FT /note="ScanRegExp hit to PS00374, FT Methylated-DNA--protein-cysteine methyltransferase active FT site. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(342537..343187) FT /transl_table=11 FT /gene="alkB" FT /gene_synonym="aidD" FT /locus_tag="BP0340" FT /product="alkylated DNA repair protein" FT /note="Similar to Escherichia coli alkylated DNA repair FT protein AlkB or AidD or B2212 SW:ALKB_ECOLI (P05050) (216 FT aa) fasta scores: E(): 9.4e-44, 56.808% id in 213 aa, and FT to Brucella melitensis AlkB TR:Q9LA70 (EMBL:AF148683) (212 FT aa) fasta scores: E(): 9.9e-47, 58.294% id in 211 aa" FT /protein_id="CAE40717.1" FT /translation="MQADLFDAEQTGIRTRLGEQAWVLRGFALPWLDALLPALRAVIAQ FT APLRHMATPGGFTMSVALTNCGALGWTTDAHGYRYRPDDPQTGLPWPPMPQAFAQLARE FT AAAQAGFAGFDPDACLVNRYAPGARMSLHQDKNERDFGAPIVSVSLGLPAMFLFGGARR FT DERPARIPLLHGDVAVWGGVDRLRYHGVMPLAEGQHPLLGRQRINFTLRRAGA" FT CDS complement(343199..343921) FT /transl_table=11 FT /locus_tag="BP0341" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr1862 protein TR:Q98JN4 FT (EMBL:AP002998) (247 aa) fasta scores: E(): 2.1e-59, FT 61.039% id in 231 aa, and to Caulobacter crescentus FT hypothetical protein Cc0708 TR:Q9AA98 (EMBL:AE005746) (234 FT aa) fasta scores: E(): 7.4e-54, 57.778% id in 225 aa" FT /protein_id="CAE40718.1" FT /translation="MDTCPNTVQARIGALDWPALETALDARGAAVAHGLLDARECGELA FT ALYAQPRLFRSRIVMARHGFGRGEYQYFAYPLPPLVAQLRTAFYPPLAAVANRWNAALR FT DPMRYPARHADWLHTCHQADQARPTPLLLKYGPGDYNCLHQDLYGERVFPLQVAILLSR FT PGRDFDGGEFVMTEQRSGHAARAEVMPLAQGDALVFAVNRRPAQGARGPVQASLRHGVS FT ELRAGQRYTIGIIFHDAT" FT CDS 344066..344566 FT /transl_table=11 FT /locus_tag="BP0342" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0312 TR:Q9I6H9 (EMBL:AE004469) (164 aa) fasta FT scores: E(): 5.4e-27, 58.182% id in 165 aa, and to FT Rhizobium loti Mll0105 protein TR:Q98NK1 (EMBL:AP002994) FT (167 aa) fasta scores: E(): 1.1e-26, 59.236% id in 157 aa" FT /protein_id="CAE40719.1" FT /translation="MEWVLVSACLLGRPVRYDGRDAATGHPVLARWQAERRVVAVCPEV FT AGGLPTPRPPAEIAAGAGGAAVLDGLAQVREASGVDVSAAFVEGARQALALVRERGIRV FT AVLKEGSPSCGSGYTYDGSFSGARIAREGVTAASLRRAGVRVFSEHELDAAQAWLRHLE FT TGA" FT CDS complement(344570..345358) FT /transl_table=11 FT /gene="bhuV" FT /locus_tag="BP0343" FT /product="putative ATP-binding component of hemin transport FT system" FT /note="Similar to Yersinia pestis hemin transport system FT ATP-binding protein HmuV SW:HMUV_YERPE (Q56993) (266 aa) FT fasta scores: E(): 1.6e-23, 41.176% id in 255 aa, and to FT Yersinia enterocolitica ATPase component HemV TR:P74981 FT (EMBL:X77867) (266 aa) fasta scores: E(): 1.7e-24, 42.353% FT id in 255 aa" FT /protein_id="CAE40720.1" FT /translation="MTLQARNLTLARGGAPILTDVSLTLAPGALVGLLGANGAGKSTLL FT AALAGELAPRSGQVFLGDADLATLSARQLARRRAVLPQKPSLSFDLGVSDVVGMGAYPF FT PELDPAAVRQLVRDALEQAGVTHLAQRRYPQLSGGEQQRVQFARVLAQCHAMHAPGQTR FT YLMLDEPISNLDPRHQMELLATARALAHEAGMGVLVIVHDINQAARWCDTLALLADGRL FT AALGPPADVLTPDHMRRVYGIEADVLAHPTLPGRLLVLAR" FT misc_feature complement(344699..345277) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(344909..344953) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT misc_feature complement(345233..345256) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(345373..346308) FT /transl_table=11 FT /gene="bhuU" FT /locus_tag="BP0344" FT /product="putative hemin permease" FT /note="Similar to Yersinia enterocolitica hemin permease FT HemU TR:P74980 (EMBL:X77867) (334 aa) fasta scores: E(): FT 4.8e-47, 50.000% id in 286 aa, and to Yersinia pestis hemin FT transport system permease protein HmuU SW:HMUU_YERPE FT (Q56992) (334 aa) fasta scores: E(): 7.3e-47, 49.141% id in FT 291 aa. Also similar to BP3340, 40.256% identity (42.568% FT ungapped) in 313 aa overlap." FT /protein_id="CAE40721.1" FT /translation="MGILAAASGAVHIPLADLARLIGGDSTPRDALWRNVLFDIRLPRV FT LFAATAGAALAICGAAMQALFRNPLAEPGLVGISAGGAMGAVLAIVLTSGGFAITAPAA FT FAGSLLATGCAYVLGRRAHGVAGLLLAGIAINTVAGSVIGLLTFMASDAQLRDLTFWSM FT GSLAGARWSLLAFLAPWTLLWSWWLMRQWRAMNALLLGEREAHHLGFALRSVRRQLVLA FT TALIVGPLVAATGGIGFVGLVVPHLIRMTLGADHRWLLPASMLAGALALTLADWLARVV FT IVPAELPIGLVTSLVGGPFFLWLLARGRRL" FT misc_feature complement(345388..346284) FT /note="HMMPfam hit to PF01032, FecCD transport family" FT misc_feature complement(join(345391..345447,345469..345534, FT 345580..345645,345745..345810,345871..345936, FT 345952..346017,346030..346086,346108..346173)) FT /note="8 probable transmembrane helices predicted for FT BP0344 by TMHMM2.0 at aa 45-67, 74-93, 97-119, 124-146, FT 166-188, 221-243, 258-280 and 287-306" FT CDS complement(346361..347230) FT /transl_table=11 FT /gene="bhuT" FT /locus_tag="BP0345" FT /product="putative hemin binding protein" FT /note="Similar to Yersinia enterocolitica hemin binding FT protein HemT TR:P74979 (EMBL:X77867) (279 aa) fasta scores: FT E(): 8.2e-29, 37.638% id in 271 aa, and to Yersinia pestis FT hemin-binding periplasmic protein HmuT precursor FT SW:HMUT_YERPE (Q56991) (279 aa) fasta scores: E(): 9.4e-29, FT 37.638% id in 271 aa" FT /protein_id="CAE44677.1" FT /translation="MRQAMKRLLAWLLAMACAGAAAAAQTAPAQRVVTLGGTVTEIVYA FT LGQGGRLVGDDLSSLYPQAATQLPRIGYYRAVPVEGVLALEPDLVLASEQAGPPDAIER FT LKAVGVRVAVVSDQASVQSLHARIRAIAQALDAVPEGERLAAQLDAELARAEALPASGA FT RALLLMNRTGTPLGAGRDTAADLLLRLSGLANALAGQEGYKPLSAEALGALAPEVIVVT FT AASLAASGGLEKLRAQPGIAATPAAQRQCIVVMDDLLALGTGPRLPQAIRQLKETPCVA FT GHGAPPAR" FT misc_feature complement(346457..347149) FT /note="HMMPfam hit to PF01497, Periplasmic binding protein" FT misc_feature complement(347144..347209) FT /note="1 probable transmembrane helix predicted for BP0345 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(347162..347230) FT /note="Signal peptide predicted for BP0345 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.617 between residues 23 and 24" FT CDS complement(347227..348273) FT /transl_table=11 FT /gene="bhuS" FT /locus_tag="BP0346" FT /product="putative hemin transport protein" FT /note="Similar to Yersinia pestis hemin transport protein FT HmuS SW:HMUS_YERPE (Q56990) (345 aa) fasta scores: E(): FT 1.1e-46, 42.486% id in 346 aa, and to Yersinia FT enterocolitica hemin transport protein HemS SW:HEMS_YEREN FT (P31517) (345 aa) fasta scores: E(): 1.2e-46, 43.413% id in FT 334 aa" FT /protein_id="CAE44678.1" FT /translation="MTEPTFATRAAALRQRNDELAASQPGQRARNLAQALGVSEAEWIA FT AGCNGARVTALRGKPQAIFRDLGELGEVMALTRNDWCVHERHGRYEDIQAEGPVGLVLG FT PDIDLRVFFNCWASAWAVEQDGHTSLQFFDGAGVAVHKVYRTEATDGAAWEALVARYAG FT EPEWPEPQPYPPAADAAAVDDPAALRRDWLAMQDTHEFFPLLRRLKVGRLAALKAAGAD FT LAQQVPAETVEHMLTQAAASGLSIMCFVGNRGMIQIHTGPVEKLRRTGPWYNVLDPRFN FT LHLNTETVDSAWVVSKPTSDGWVTSLELYTAGGELIVQFFGERKPGKPELTAWRQLLSG FT LCGQPLAE" FT CDS complement(348309..350846) FT /transl_table=11 FT /gene="bhuR" FT /locus_tag="BP0347" FT /product="outer membrane heme receptor" FT /note="Previously sequenced as Bordetella pertussis outer FT membrane heme receptor BhuR TR:AAK38153 (EMBL:AY032627) FT (149 aa) fasta scores: E(): 2.7e-49, 100.000% id in 149 aa. FT Similar to Rhizobium meliloti putative iron transport FT protein Smc02726 TR:CAC46967 (EMBL:AL591790) (743 aa) fasta FT scores: E(): 4.6e-37, 37.630% id in 768 aa" FT /protein_id="CAE44679.1" FT /translation="MRGALAACALAGTLAAAPAAAQPTAAPASAGARAWHIDAGPLGEA FT LARFADQAGITLLYDPAAVRGRASAGLQGVYSVPDGLARLLDGSGLDARQRGAGTYVLQ FT ALPAGPVAQLAPVTIEADGVRADPAWARTATRRELDARQVLDWSDIGKRVDPGVNYNRR FT TKSINIRGLDENRVVTRIDGIRLPWLDDGARGIQGGLNAVDFNTLSRLDVVRGADSSAA FT GSGALGGLADLRTLEPADLLRDGRRFGALAKSDYDSADASWGLNAALAGQVHDDTSWLL FT QAGTRNGHDLDNRADTGGYGSKRSQPSPEDYAQNNFLLKLQQRIDGGHRLGLTGEYFKR FT RADLDQMYQQGAGTSYQYGANRTHEETTRKRVSLDYQYNAPQAGAAIDSARAMVYWQRL FT RLDSSQDARRTRDGRAYARPGDPYFYGYPSGPYGRSNSIQESILGVNGELSSRFEGMVS FT QRVTIGGEWYGNRTEQYSDGYDNCPAIPPGTPAPMGPRLCDMLHTNQADMPRVKGSQWA FT IWAQDEIAFADGRYILTPSLRYDHYEQKPQQGGGYQNNPNAGALPPSSSGGRFSPKLLG FT TWKAREALTLYAQYGFGYRAPSATELYTNYGGPGTYLRVGNPSLKPETSKGWELGARLG FT DDQLGGAVSLFDNRYQNFIDKNVPLGKGSPQWQPAWDGQYPLGVTGLANRARVRIYGAE FT ASAHWRFAPNWRTWGSLAWAVGKDENTGQHLNSVPPLKAILGLGYQRDEWGIDAMLTAA FT TRRDDVQYPEASASARYADFQAPGYGVVDLSAYWRPAAVKGLQLQAGVFNLFDKKYWEA FT INVPTAGAIAIPRPLDWYNEPGRSVRVSLTYQY" FT misc_feature complement(348312..348680) FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT misc_feature complement(350784..350846) FT /note="Signal peptide predicted for BP0347 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.975 between residues 21 and 22" FT CDS complement(351054..351971) FT /transl_table=11 FT /gene="hurR" FT /locus_tag="BP0348" FT /product="heme uptake transmembrane sensor" FT /note="Similar to Escherichia coli protein FecR or B4292 FT SW:FECR_ECOLI (P23485) (317 aa) fasta scores: E(): 1e-22, FT 32.459% id in 305 aa, and to Pseudomonas aeruginosa FT probable transmembrane sensor Pa1911 TR:Q9I2J3 FT (EMBL:AE004617) (316 aa) fasta scores: E(): 2.4e-32, FT 41.118% id in 304 aa" FT /protein_id="CAE44680.1" FT /translation="MAREAARWLVRLGSGQASADEIQACDHWRASHAEHERAWQRARRL FT TSMFDRIPPAVGQAALGRARDRRAMLKSLVALLAAPPAAWAALRGARNSGWLADLRTGT FT GETRTVALGPGTQLRLNTGTAVSLDDGSGLLSLRLHRGEIYLEADRPCRVLTRGGMIRT FT QAAHLWLRQDDADGLLGVVAGLAFWQGADNRTHSVAAGQRIAWHDGALQGAAQTLDGSP FT DWLRGVLRADAMRLDRFLRELSRYRPGTLRCDPRVAGLRLSGVFQLAHTDDILRALPAL FT LPVQLSYVTPYWITVGPRPAGATT" FT misc_feature complement(351915..351971) FT /note="Signal peptide predicted for BP0348 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.708) with cleavage site FT probability 0.708 between residues 19 and 20" FT CDS complement(352007..352516) FT /transl_table=11 FT /gene="hurI" FT /locus_tag="BP0349" FT /product="heme uptake regulator" FT /note="Similar to Escherichia coli probable RNA polymerase FT sigma factor FecI or B4293 SW:FECI_ECOLI (P23484) (173 aa) FT fasta scores: E(): 1.2e-26, 50.649% id in 154 aa, and to FT Pseudomonas aeruginosa putative RNA polymerase sigma factor FT Pa1912 TR:Q9I2J2 (EMBL:AE004617) (168 aa) fasta scores: FT E(): 8.9e-31, 55.689% id in 167 aa. Also similar to BP1136, FT 46.875% identity in 160 aa overlap" FT /protein_id="CAE44681.1" FT /translation="MPLTSLAPQDAVHALYREHHGWLQSWLRKKLNDAYDAADLAQDTF FT VRVLRHRAELATLREPRAYLLTIAGRLVVNHYRRRSLERAYLEALASLPPAHAPSPEQR FT ALILEALDQIDAFLHSLAPKVRQAFLLAQLERLPYADIARRLQVSVRTVQRYIAQGYEQ FT CILLAP" FT misc_feature complement(352043..352108) FT /note="Predicted helix-turn-helix motif with score 1853 FT (+5.50 SD) at aa 137-158, sequence LPYADIARRLQVSVRTVQRYIA" FT misc_feature complement(352277..352444) FT /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF FT subfamily)" FT CDS complement(352690..352860) FT /transl_table=11 FT /locus_tag="BP0350" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44682.1" FT /translation="MQHARIGQQLLPHFAQRAELRRTIPLFPFTLAELLAPLRRKTTNR FT PGSDEPALDAR" FT CDS 353195..353512 FT /transl_table=11 FT /locus_tag="BP0351" FT /product="putative ferredoxin" FT /note="Similar to Synechocystis sp ferredoxin PetF or FT Sll1382 TR:P74159 (EMBL:D90912) (122 aa) fasta scores: E(): FT 0.074, 28.125% id in 96 aa, and to Anabaena variabilis FT putative TR:AAL05047 (EMBL:AF410434) (99 aa) fasta scores: FT E(): 0.015, 30.526% id in 95 aa" FT /protein_id="CAE44683.1" FT /translation="MPIVVFHKGDETFTDEVKDNTNLVVRAGIKQFPYPNLRYQCGMGK FT CATCACRILAGGEHLPEPNWKEKKQLGDRLAQGYRLACQLWITHDIELRQDAAAPAGGG FT D" FT misc_feature 353204..353461 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 353315..353341 FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT CDS 353514..353813 FT /transl_table=11 FT /locus_tag="BP0352" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44684.1" FT /translation="MYVILTNKPGQFHTEAGPEFEVVEEYDYLFYGQRKAIYQIAALRG FT EAKVAIVEEGPGAVVNHVPSKFLEKFESLQGARDALTDLTRFGSMQAELVRRDA" FT CDS 353832..354137 FT /transl_table=11 FT /locus_tag="BP0353" FT /product="putative ferredoxin" FT /note="Similar to Ralstonia spKN1 ferredoxin-like protein FT PhyF TR:Q9RAF3 (EMBL:AB031996) (115 aa) fasta scores: E(): FT 0.00015, 36.957% id in 92 aa, and to Pseudomonas putida FT ferredoxin, plant-type NahT SW:FERN_PSEPU (P23263) (108 aa) FT fasta scores: E(): 0.00022, 30.303% id in 99 aa" FT /protein_id="CAE44685.1" FT /translation="MNTMVEITFITNGGKVVTAPENSNLLRVSLKEQGGIPFKCGGGLC FT GTCKCLIESGLEHTDAIKPKERRHLTPEDFERGYRMACQTFVNGDIKVSWQKPKPV" FT misc_feature 353850..354098 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 353949..353975 FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT CDS 354148..355080 FT /transl_table=11 FT /locus_tag="BP0354" FT /product="probable ornithine cyclodeaminase" FT /note="Similar to Halobacterium sp ornithine cyclodeaminase FT Ocd2 or Vng1364G TR:Q9HQ24 (EMBL:AE005056) (328 aa) fasta FT scores: E(): 3.7e-18, 31.494% id in 308 aa, and to FT Rhizobium loti ornithine cyclodeaminase Ocd2 or Mlr3204 FT TR:Q98GR8 (EMBL:AP003001) (321 aa) fasta scores: E(): FT 5.4e-16, 33.127% id in 323 aa" FT /protein_id="CAE44686.1" FT /translation="MLHIDDAMIEDAVTPQAAQEVLHAAFLDFGRGSAAMQRRVRTEAG FT GVKLSTLGAVIPGQGVAGAKVYTTIKGQFQFVILLFSAADGRPLATCDAGTLTRKRTAA FT CTVLAAGALARPRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGR FT RCGVPARMAAPADIAAQADIVVTATRSTTPLFAGQALRAGAFVGAIGSSLPHTRELDDE FT ALRRARAVVVEWREQTLSEAGDLVLAAPDTGLDAKVVELADVLAGRAAARQADEDIVIY FT KSVGVGLEDVALAGYAYRRLAAQRGWPAP" FT misc_feature 354148..355062 FT /note="HMMPfam hit to PF02423, Ornithine FT cyclodeaminase/mu-crystallin family" FT CDS complement(355077..356027) FT /transl_table=11 FT /locus_tag="BP0355" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44687.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 355077..355108 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(355077..356129) FT misc_feature complement(355113..355646) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(355704..355769) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(356098..356129) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(356139..356861) FT /transl_table=11 FT /locus_tag="BP0356" FT /product="GntR-family transcription regulator" FT /note="Similar to Rhizobium leguminosarum transcription FT activator MatR TR:Q9JP74 (EMBL:AF117694) (222 aa) fasta FT scores: E(): 9.1e-15, 37.824% id in 193 aa, and to FT Streptomyces coelicolor putative transcriptional regulator FT Sc4b5.15 TR:Q9ZBV3 (EMBL:AL034443) (225 aa) fasta scores: FT E(): 1.1e-17, 33.028% id in 218 aa. Also similar to BP2975, FT 56.034% identity (56.522% ungapped) in 232 aa overlap." FT /protein_id="CAE44688.1" FT /translation="MAISGPSTYPLDAGHSAPSLKIGEQHMPLFAVIRDKLRERILSGE FT FTPGDRLIEGRLSDDMGVSRIPVREALRALAAEGLVTIEPRRGASVAVPSEAIAYDMVE FT VRATLEGLNAKLAAQRRDDATVTRLRKFLDDGTEAARSDDLQQFLALNSQFHEMLATIA FT GNVVLTDLMRSLRDRTALLFAPSNMRRAKQNWDEHAQILNAVIAGNGELASLLATQHVH FT NAARAYTEAQQQNQPSAA" FT misc_feature complement(356589..356765) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(356637..356711) FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(356960..357703) FT /transl_table=11 FT /locus_tag="BP0357" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Sma1368 TR:AAK65408 (EMBL:AE007262) (241 aa) fasta scores: FT E(): 1e-21, 36.325% id in 234 aa, and to Vibrio cholerae FT hypothetical protein Vca1052 TR:Q9KKQ0 (EMBL:AE004431) (240 FT aa) fasta scores: E(): 2.8e-14, 28.507% id in 221 aa" FT /protein_id="CAE44689.1" FT /translation="MPWLAYAPDPWLFAAMAATVFVAAVAQGIGGVGFAMLAAPVAGIF FT FPQLAPGPLLTLGGFVSLLTALRERAAIDWATVGYTLVGRFAGTLVAVYALTRFAPQLL FT SVLFAVSILAAVGISVAGVRISASPAQMSGAGLASGVMGTITSVGAPPLAIMMQHSPPP FT RLRATLGLILFIGASFSLTMLSLADRYGVNEFLLSVGLLPFLLLGFSCSSRLKERMRPA FT TVRRILLGICAIGALVVLARAALGA" FT misc_feature complement(join(356966..357022,357059..357115, FT 357146..357196,357233..357298,357329..357394, FT 357416..357475,357506..357571,357593..357658)) FT /note="8 probable transmembrane helices predicted for FT BP0357 by TMHMM2.0 at aa 15-37, 44-66, 76-96, 103-125, FT 135-157, 169-186, 196-215 and 227-246" FT misc_feature complement(357524..357553) FT /note="ScanRegExp hit to PS00178, Aminoacyl-transfer RNA FT synthetases class-I signature." FT misc_feature complement(357626..357703) FT /note="Signal peptide predicted for BP0357 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.833) with cleavage site FT probability 0.688 between residues 26 and 27" FT CDS 357934..359442 FT /transl_table=11 FT /locus_tag="BP0358" FT /product="putative membrane protein" FT /note="Similar to Bacillus halodurans Bh2161 protein FT TR:Q9KAX5 (EMBL:AP001514) (477 aa) fasta scores: E(): FT 2.9e-34, 46.573% id in 496 aa, and to Bacillus subtilis FT hypothetical 48.8 kDa protein YhfA TR:O07599 (EMBL:Y14083) FT (463 aa) fasta scores: E(): 2.6e-16, 32.520% id in 492 aa. FT Also similar to BP2974, 65.139% identity (65.663% ungapped) FT in 502 aa overlap." FT /protein_id="CAE44690.1" FT /translation="MQSDVVLGAAHWVYLLSVVAIILTMVLRANAVVPSVLGTFLVVLA FT FTGSPIQALVGIFTASFVAAKELFNIFLVITFMTALLNALKVLQADVRMVQPLRRVMTN FT GHASFLILAGCTYGLSLFFWPTPAVPLVCAILLPAAVAAGLPPLAGAMAIAIAGQGMAL FT SSEYVIGVAPGISAKAAGAAVSAAVVADRALVLSVITGAIALVMTYLFMRKHIVPGDTA FT LLAAWQARAQDGELERIEGSGSFDKAELARGASQPVKGGAEARLAGWSRAFALITPIAF FT LGVIALMALPRLVPGLPALRGGDAAALVGGVAFMLMMLATLAAEGPRRMLDVCPEHVTD FT GFVFAFRAMGSVLPIAGFFFIGAAETAAPILGLESGHAPGLLFDLISAAQHLIPENHYL FT VAFGVLLVGMVTGIDGSGFAGLPLTGTLSGALGPVVGIDPATLAAVGQMGAVWTGGGTL FT IAWSSLIAVAGFARVHVLDMVRALMLPVLLALSVSTIAAILIWS" FT misc_feature join(357946..358014,358039..358107,358135..358188, FT 358246..358305,358333..358401,358435..358503, FT 358513..358566,358735..358803,358846..358905, FT 359128..359196,359278..359346,359365..359433) FT /note="12 probable transmembrane helices predicted for FT BP0358 by TMHMM2.0 at aa 5-27, 36-58, 68-85, 105-124, FT 134-156, 168-190, 194-211, 268-290, 305-324, 399-421, FT 449-471 and 478-500" FT misc_feature 359194..359211 FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT CDS 359562..360293 FT /transl_table=11 FT /locus_tag="BP0359" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia muridarum putative coenzyme pqq FT synthesis protein C Tc0900 TR:Q9PJC9 (EMBL:AE002356) (236 FT aa) fasta scores: E(): 2.5e-11, 28.729% id in 181 aa, and FT to Pseudomonas aeruginosa pyrroloquinoline quinone FT biosynthesis protein C Pqqc or Pa1987 TR:Q9I2C2 FT (EMBL:AE004625) (250 aa) fasta scores: E(): 2e-06, 28.638% FT id in 213 aa" FT /protein_id="CAE44691.1" FT /translation="MSDLMSREEFRSALENAIKGKSANASPFSIAWASGQLSREHLARW FT AENHYHYVGPFADYLAYIYGRTPDTYTEAKDFLLANMYEEEIGGDRHTDLLIRFAEACG FT TTRERVVSPDNMSPTTRGLQSWCYAVAMREDPIVAVAGLVVGLESQVPSIYRKQTPTLR FT EKYGFTDEEVEFFDLHIVSDEIHGERGYQIVLEHANTPELQQRCLRICEVGAQMRLLYT FT TALYTDYVQHELSLDKLKLAA" FT misc_feature 359979..360056 FT /note="ScanRegExp hit to PS00217, Sugar transport proteins FT signature 2." FT CDS 360338..361798 FT /transl_table=11 FT /locus_tag="BP0360" FT /product="probable aldehyde dehydrogenase" FT /EC_number="1.2.1.3" FT /note="Similar to Bacillus stearothermophilus aldehyde FT dehydrogenase, thermostable AldhT SW:DHAL_BACST (P42329) FT (488 aa) fasta scores: E(): 1.1e-77, 46.008% id in 476 aa, FT and to Bacillus subtilis probable aldehyde dehydrogenase FT YcbD SW:DHA1_BACSU (P42236) (488 aa) fasta scores: E(): FT 7.9e-77, 45.702% id in 477 aa" FT /protein_id="CAE44692.1" FT /translation="MEDLRNHEFKNYIGGQWVACAAGKTYPNVNPADTDDIVGRFQASQ FT AEDAAAAVAAAQAAFDGWRNLAVSKRAALMQRAADYLEAHAEQFGRELTREEGKALNLA FT KDEVLRSAQTIRFYAAEGQSFSGETFVNDDPDMVVYSQREPLGVVTVISPWNFPVSIPA FT RKIAPALITGNTVVFKPSSDAPLSGLRLVEAFEQAGLPPGVLNLVTGSASAIGAAITQA FT SQVRAVSFTGSTAAGEQIHRSVDMTTRTQMELGGKNPLIVMADADLDRAVDLVVKGGFS FT LSGQACTGTSRVLVDAPVKAAFTEKLLAKVKALKVGNSLEGSFDLGPLATARQLESVMR FT YIEVGKQEARLLCGGERLEGPGYERGYYLTPAVFADVTQQMRIAREEIFGPVIALIEVN FT GYEDAIAKANDTEYGLAAAIATTNAQYAHRFARDIQAGTVKINRTTTGNLINAPFGGLK FT RSSTSTFRESGRIGLEFYTQIKTVYRAG" FT misc_feature 360383..361795 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature 361091..361114 FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT misc_feature 361175..361210 FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT CDS 361823..362302 FT /transl_table=11 FT /locus_tag="BP0361" FT /product="conserved hypothetical protein" FT /note="Similar to Citrobacter freundii hypothetical 15.0 FT kDa protein in dhaT-dhaS intergenic region SW:YDHY_CITFR FT (P45517) (142 aa) fasta scores: E(): 4.1e-11, 33.803% id in FT 142 aa, and to Clostridium pasteurianum hypothetical 15.1 FT kDa protein TR:O30453 (EMBL:AF006034) (143 aa) fasta FT scores: E(): 5.6e-11, 36.957% id in 138 aa" FT /protein_id="CAE44693.1" FT /translation="MKQIYRLELEEARVMIQAAIAKSEEIGVLESICIVDDGGYPIALE FT RMNGARITGPQIAWNKAFTTAGHKRSTHLFNTPPNGPALPGNEAFGIQWSFEGKFAVFV FT GGFPIVVDDEVIGGVGLSGGNGEQDTKAGVAALQALADMLAERGMKVMVAADIKK" FT CDS 362321..363331 FT /transl_table=11 FT /locus_tag="BP0362" FT /product="CDP-6-deoxy-delta-3,4-glucoseen reductase" FT /EC_number="1.17.1.-" FT /note="Similar to Yersinia pseudotuberculosis FT CDP-6-deoxy-delta-3,4-glucoseen reductase AscD or RfbI FT SW:ASCD_YERPS (P37911) (328 aa) fasta scores: E(): 1.2e-35, FT 33.846% id in 325 aa, and to Yersinia pestis FT CDP-6-deoxy-delta-3,4-glucoseen reductase DdhD TR:CAB63270 FT (EMBL:AJ251713) (329 aa) fasta scores: E(): 4.9e-36, FT 33.739% id in 329 aa. Also similar to BP1817, 40.000% FT identity in 350 aa overlap" FT /protein_id="CAE44694.1" FT /translation="MAYRIHLMETGEQFSAEPGESVLDAATRANVRMAHECTFGGCGTC FT RVKLLEGRVEYEEPPMALSEEEAACGYALVCQARACSDLEISVASGPSFAEPRRIAARV FT AHIAPLCSDVTHLALEVDPDQWPDYRAGQYMNIVLPDGQTRSFSMASDPRHGRLDFHVR FT RIAGGRFTDRWLAAAQAGAPLEIEAPLGTFCYHEQDYRPLVMVATGTGLAPIKAMLESL FT LDDDECPPVSLYWGMRTEADLYLRDAIASWQGRLYEFDFVPVLSRPDAGWRGRSGYVQD FT AVLQDFDDLSEHALYLCGSPTMIAQAKHRFAERGASLDHLYADSFTFQHPLAAAA" FT misc_feature 362327..362566 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 362429..362455 FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT misc_feature 362918..363250 FT /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding FT domain" FT CDS 363546..364286 FT /transl_table=11 FT /locus_tag="BP0363" FT /product="probable extracellular solute-binding protein" FT /note="Similar to Rhizobium loti probable binding protein FT component of amino acid ABC transporter Mlr2201 TR:Q98IX6 FT (EMBL:AP002999) (262 aa) fasta scores: E(): 0.0001, 29.104% FT id in 134 aa, and to Synechocystis sp hypothetical 30.6 kDa FT protein Sll0174 TR:Q55556 (EMBL:D63999) (284 aa) fasta FT scores: E(): 4.9e-29, 41.304% id in 230 aa" FT /protein_id="CAE44695.1" FT /translation="MMIDPELRPAFLPAGKLRAAINLGNPILAGTDAAGQAVGVSVDLA FT REFARRLNAGIELRVFDTAGQSVDAVTREEADIGFFAIDPARGAGIAFTGPYVLIEGAY FT LVRDDSPLQANEDVDRAGKRVTVGKGSAYDLHLTRALQHAEIVRAASSQAVVDTFLARR FT LDVAAGVKQQLQADARRVGGVRLLPGRFMVIRQAMGLPKARGDAAAACLDAFVESMKGN FT GFVAQALARHGIQGASVAPPGRDG" FT misc_feature 363594..364250 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT CDS 364493..365467 FT /transl_table=11 FT /locus_tag="BP0364" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smb20179 TR:CAC48579 (EMBL:AL603642) (324 aa) fasta FT scores: E(): 1.3e-14, 24.615% id in 325 aa, and to FT Rhizobium loti Mlr3473 protein TR:Q98G63 (EMBL:AP003002) FT (390 aa) fasta scores: E(): 6.7e-12, 30.864% id in 324 aa" FT /protein_id="CAE44696.1" FT /translation="MVRCALAGAGLACCVSAMATPIFVLNSLNADVSIIDSQTYAEMRR FT VPTGKEPHHLYLTPDEQSLMVANAMSDTITLLDPRTGAVQHTLTGIVDPYHLRFSPDMK FT WFVTAANRLDHIDIYSWERRTEEFDLKLARRIPAGRTPSHIAIDSGSRVAYVTLQDSDQ FT LIAIDLGTQAPLWTIPVGKTPADVFVTGDDKILLVALTGDSYVEAYDLTVSPARLVRRI FT KTGAGAHAFRAQGDGRHLFVSNRAANTISRIDMQTLEVVDSYPAPGGPDCMDVLADGKM FT LLVTSRWAGKLTVIDLETKKVSQQVRVGKSPHGVWTLGHAAAR" FT misc_feature 364493..364549 FT /note="Signal peptide predicted for BP0364 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.728 between residues 18 and 19" FT misc_feature 364496..364564 FT /note="1 probable transmembrane helix predicted for BP0364 FT by TMHMM2.0 at aa 7-29" FT misc_feature 365423..365455 FT /note="ScanRegExp hit to PS00639, Eukaryotic thiol FT (cysteine) proteases histidine active site." FT CDS complement(365464..366414) FT /transl_table=11 FT /locus_tag="BP0365" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44697.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQDQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 365464..365495 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(365464..366516) FT misc_feature complement(365500..366033) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(366091..366156) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS complement(366496..367275) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0366" FT /product="putative universal stress protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The insertion occurred near the FT C-terminus. It is not clear whether this insertion affects FT the function of the protein. Similar to Pseudomonas FT aeruginosa hypothetical protein Pa4352 TR:Q9HW49 FT (EMBL:AE004851) (286 aa) fasta scores: E(): 3e-15, 33.721% FT id in 258 aa, and to Wolinella succinogenes hypothetical FT 23.3 kDa protein TR:CAC50083 (EMBL:AJ318778) (204 aa) fasta FT scores: E(): 3e-07, 30.319% id in 188 aa" FT /db_xref="PSEUDO:CAE44698.1" FT misc_feature complement(366862..367167) FT /note="HMMPfam hit to PF00582, Universal stress protein FT family" FT CDS 367463..368101 FT /transl_table=11 FT /locus_tag="BP0367" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1037 TR:Q9I4T7 (EMBL:AE004536) (206 aa) fasta FT scores: E(): 1.7e-45, 60.294% id in 204 aa, and to Vibrio FT cholerae hypothetical protein Vc2115 TR:Q9KQ86 FT (EMBL:AE004285) (207 aa) fasta scores: E(): 3.4e-37, FT 51.515% id in 198 aa" FT /protein_id="CAE44699.1" FT /translation="MPPDPSVLLLYTLYLVAIVAEAMTAALAAGRRDMDWVGVCVIACV FT TALGGGSLRDVLLGHYPLSWVAHPEYLWMTAGAALLTALGARALRRLRSLFLLLDAIGL FT VAFTIIGCQVAQQMEMPLTIVLVSGMITGCAGGVLRDVLCNDIPLLFRSELYASVSAVT FT GGLYLAMYGQGVSASVSVPVALAVGLAFRLLALRFNWQMPKFVYRGDWH" FT misc_feature join(367490..367549,367568..367636,367673..367726, FT 367745..367813,367826..367879,367904..367972, FT 367982..368050) FT /note="7 probable transmembrane helices predicted for FT BP0367 by TMHMM2.0 at aa 10-29, 36-58, 71-88, 95-117, FT 122-139, 148-170 and 174-196" FT CDS complement(368138..369481) FT /transl_table=11 FT /gene="gdhA" FT /locus_tag="BP0368" FT /product="NADP-specific glutamate dehydrogenase" FT /EC_number="1.4.1.4" FT /note="Similar to Escherichia coli NADP-specific glutamate FT dehydrogenase GdhA or B1761 SW:DHE4_ECOLI (P00370) (447 aa) FT fasta scores: E(): 3.7e-126, 72.398% id in 442 aa, and to FT Pasteurella multocida GdhA or Pm0043 TR:Q9CPJ4 FT (EMBL:AE006038) (449 aa) fasta scores: E(): 2.4e-126, FT 72.321% id in 448 aa" FT /protein_id="CAE44700.1" FT /translation="MKLQSLDDFLRRVAARDPQQAEFMQAVQEVMLSLWPFIEKHPHYA FT EHALLERLVEPERVIQFRVCWTDDQGQAQVNRAFRIQHSSAIGPFKGGMRFHPTVNLSV FT LKFLAFEQTLKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQALMLELHRHLGPDTDV FT PAGDIGVGAREVGFMAGMMKKLSNSAASVFTGKGLCFGGSLIRPEATGYGTVYFAQEML FT QRAGLSFDGMRVSVSGSGNVAQYAIEKAMALGAKVVTISDSCGTVIDEAGFTHEKLLAL FT MHIKNDLRGRLDTYASQFGLRYEAGVRPWHVPVDVALPCATQNELDENDARTLIRNGVK FT CVAEGANMPATLDAAKAFIAAEVLYAPGKASNAGGVAVSGLEMSQNSARLPWTREQVNA FT RLHAIMRDIHENCVRHGHGAGNYVNYVDGANIAGFVKVADAMRQQGLY" FT misc_feature complement(368147..368881) FT /note="HMMPfam hit to PF00208, FT Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" FT misc_feature complement(369080..369121) FT /note="ScanRegExp hit to PS00074, Glu / Leu / Phe / Val FT dehydrogenases active site. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(369904..370692) FT /transl_table=11 FT /locus_tag="BP0369" FT /product="putative endonuclease" FT /note="Similar to Neisseria meningitidis putative nuclease FT Nma0348 or Nmb2082 TR:Q9JR99 (EMBL:AL162752) (259 aa) fasta FT scores: E(): 5e-63, 56.705% id in 261 aa, and to FT Streptomyces coelicolor putative exodeoxyribonuclease FT Sce87.25C TR:Q9RKB3 (EMBL:AL132674) (274 aa) fasta scores: FT E(): 2.3e-48, 47.388% id in 268 aa" FT /protein_id="CAE44701.1" FT /translation="MLRITSLNLNGIRSAFRKGLQPWMTAHNADVLCLQEIKVSHDDLT FT DELRHPPGYTGHFHHAEKKGYSGVGMYLRAGAERVVAGFDCEEFDAEGRILRADWKDLS FT VISAYLPSGSSGDERQQTKYRFLDQFGPWLDGLMAEHRKTGREFVICGDWNIAHKEIDL FT KNWKGNQKNSGFLPEERAWLTEVFDRRGFVDVFRKLDERADQYTWWSNRGQAWAKNVGW FT RIDYQIATPGIAERARATSIYKDERFSDHAPLTVDYDIAL" FT misc_feature complement(369916..370689) FT /note="HMMPfam hit to PF01260, AP endonuclease family 1" FT misc_feature complement(370579..370608) FT /note="ScanRegExp hit to PS00726, AP endonucleases family 1 FT signature 1." FT CDS 370830..371504 FT /transl_table=11 FT /gene="pyrE" FT /locus_tag="BP0370" FT /product="orotate phosphoribosyltransferase" FT /EC_number="2.4.2.10" FT /note="Similar to Escherichia coli orotate FT phosphoribosyltransferase PyrE or B3642 SW:PYRE_ECOLI FT (P00495) (212 aa) fasta scores: E(): 7.5e-42, 58.879% id in FT 214 aa, and to Salmonella typhimurium orotate FT phosphoribosyltransferase PyrE SW:PYRE_SALTY (P08870) (212 FT aa) fasta scores: E(): 2.2e-42, 59.346% id in 214 aa" FT /protein_id="CAE44702.1" FT /translation="MSASASTAADFVRFALDEGVLRFGSFKVKSGRISPYFFNAGLFNS FT GRSVGTLAGFYAQALIDSGVAFDMLFGPAYKGIPLATATSVALAGHGAMAGRDVPFAFN FT RKEAKDHGEGGTLVGAPLTGKVVIIDDVITAGTSVRESVEIIRAAGAEPAAVLIALDRM FT ERAGPDDALSPHSAVQDVARTYGIPVVSIASLADIMTLLQDDAQFAEHRAAVQAYRSKY FT GV" FT misc_feature 370932..371417 FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain" FT misc_feature 371205..371243 FT /note="ScanRegExp hit to PS00103, Purine/pyrimidine FT phosphoribosyl transferases signature. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(371618..373072) FT /transl_table=11 FT /gene="gatB" FT /locus_tag="BP0371" FT /product="glutamyl-tRNA(GLN) amidotransferase subunit B" FT /note="Similar to Staphylococcus aureus glutamyl-tRNA(GLN) FT amidotransferase subunit B GatB TR:Q9RF06 (EMBL:AF205033) FT (475 aa) fasta scores: E(): 4.7e-84, 47.521% id in 484 aa, FT and to Neisseria meningitidis glu-tRNA(GLN) FT amidotransferase subunit A GatB or Nma1570 TR:Q9JTZ3 FT (EMBL:AL162756) (476 aa) fasta scores: E(): 2.6e-114, FT 62.526% id in 483 aa" FT /protein_id="CAE44703.1" FT /translation="MNWEIVIGLETHTQLSTDSKIFSGSSTRFGAAPNTQANAVDLALP FT GSLPVMNRGAAERAILFGLAVGGKVAPRSVFARKNYFYPDLPKGYQISQYELPVVEGGT FT LSFFVGEEEKTVNLTRAHLEEDAGKSLHDEFSLASGAPASGIDLNRAGTPLLEIVTEPE FT MRSAAEAVAYARALHSLVVWLGICDGNMQEGSFRCDANVSVRPVGQKEFGTRTEIKNVN FT SFRFLERAILFEARRQIELIEDGGTVVQETRLYDADRDETRSMRSKEDAHDYRYFPDPD FT LPPLVIGQDWIDAVRAGMPELPAAQRARFEADYGLPAYDAAQLTVSRAMADYFEAVARA FT LPAGQAKLAANWIMGEVAATLNREEKDIDAAPVSAAALAALINRIIDGTISNKIARDVF FT AAMWAGENGGDADAIIEARGLKQISDSGAIGAMIDEVLAANPAIVEEYRAGKQKAFNSL FT VGQIMKAAKGKANPQQVNELLKEKLG" FT misc_feature complement(371621..372883) FT /note="HMMPfam hit to PF01162, PET112 family, C terminal FT region" FT misc_feature complement(372587..372631) FT /note="ScanRegExp hit to PS01234, Glutamyl-tRNA(Gln) FT amidotransferase subunit B signature." FT CDS complement(373075..374613) FT /transl_table=11 FT /gene="gatA" FT /locus_tag="BP0372" FT /product="glutamyl-tRNA(GLN) amidotransferase subunit A" FT /EC_number="6.3.5.-" FT /note="Similar to Bacillus subtilis glutamyl-tRNA(GLN) FT amidotransferase subunit A GatA SW:GATA_BACSU (O06491) (485 FT aa) fasta scores: E(): 6.9e-34, 46.680% id in 497 aa, and FT to Pseudomonas aeruginosa glu-tRNA(GLN) amidotransferase FT subunit A GatA or Pa4483 TR:Q9HVT8 (EMBL:AE004862) (484 aa) FT fasta scores: E(): 4.1e-45, 57.344% id in 497 aa" FT /protein_id="CAE44704.1" FT /translation="MTQSALHTEFGGIAALRDALARRQVSAVELAQSGLDAAQAASGLN FT AFLHIDPDLTLAQARAADAALAAGTAGPLAGIPIAHKDAFVTRGWRTTAGSKMLAGYAS FT PFDATVVERLAEAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTQAVPGGSSGGSAA FT AVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGIIAFGSSLDQAGPLAPS FT SRDLLELLDVMTGFDPRDATSLQACDGQANESGRVRRGHDAAQAGYDAAGSQPLKGLRI FT GVPQEYFGAGLAPDVAAAVEAALAQFEQLGAVRVPVSLPRTELAIPAYYVIAPAEASSN FT LARYDGVRYGHRAAQYGDLNEMISRSRAEGFGDEVKRRILIGTYVLSHGYYDAYYLQAQ FT RLRRLIAQDFQRAFAGQCDVIMGPVSPTVAKNIGDNRDDPTADWLADVYTLGVSLAGLP FT AMSVPCGFGGQDGRRPVGLQIIGNYFDEGRLLALADRYQQVTDWHQRAPVSQDA" FT misc_feature complement(373144..374529) FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature complement(374056..374151) FT /note="ScanRegExp hit to PS00571, Amidases signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS complement(374616..374924) FT /transl_table=11 FT /gene="gatC" FT /locus_tag="BP0373" FT /product="glutamyl-tRNA(GLN) amidotransferase subunit C" FT /EC_number="6.3.5.-" FT /note="Similar to Bacillus stearothermophilus FT glutamyl-tRNA(GLN) amidotransferase subuni GatC FT SW:GATC_BACST (P58250) (96 aa) fasta scores: E(): 9e-05, FT 34.021% id in 97 aa, and to Neisseria meningitidis FT glutamyl-tRNA(GLN) amidotransferase subuni GatC or Nmb1355 FT SW:GATC_NEIMB (Q9JZ00) (96 aa) fasta scores: E(): 3.4e-12, FT 47.059% id in 102 aa" FT /protein_id="CAE44705.1" FT /translation="MALNEQDVARIARLARIELTPDQRGRAQAELNGILHLIERLQAVD FT TQGVEPLAHPLSAHEDITLRLREDAVSEQATEARRAELLANAPESADGLFLVPKVIE" FT misc_feature complement(374634..374870) FT /note="HMMPfam hit to PF02686, Glu-tRNAGln amidotransferase FT C subunit" FT CDS 375155..376198 FT /transl_table=11 FT /gene="mreB" FT /gene_synonym="envB" FT /gene_synonym="rodY" FT /locus_tag="BP0374" FT /product="rod shape-determining protein" FT /note="Similar to Escherichia coli rod shape-determining FT protein MreB or EnvB or RodY or B3251 SW:MREB_ECOLI FT (P13519) (347 aa) fasta scores: E(): 2.6e-88, 72.595% id in FT 343 aa, and to Vibrio cholerae MreB or Vc0415 TR:Q9ZA92 FT (EMBL:AF079234) (347 aa) fasta scores: E(): 2.6e-91, FT 74.487% id in 341 aa" FT /protein_id="CAE44706.1" FT /translation="MFGFLRSYFSSDMAIDLGTANTLIYVRGKGIVLDEPSVVAIRHEG FT GPNGKKIIQAVGHEAKQMLGRVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHPRNM FT LAPSPRIIVCVPCGSTQVERRAIRESALGAGASHVYLIEEPMAAAIGAGLAVSDASGSM FT VVDIGGGTTEVAVISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEPTAELIKKE FT IGSAFPGSEVREIEVKGRNLAEGVPRSFTVSSNEILESLTDPLNQIVSAVKIALEQTPP FT ELGADITDKGIALTGGGALLRDLDRLLQEETGLPVVVADDPLTCVVRGCGEALEHLEKL FT GAIFIND" FT CDS 376287..377171 FT /transl_table=11 FT /gene="mreC" FT /locus_tag="BP0375" FT /product="rod shape-determining protein" FT /note="Similar to Escherichia coli rod shape-determining FT protein MreC or B3250 SW:MREC_ECOLI (P16926) (367 aa) fasta FT scores: E(): 6.4e-29, 36.330% id in 267 aa, and to FT Pseudomonas fluorescens rod shape determining protein MreC FT TR:Q9RH82 (EMBL:AF063934) (366 aa) fasta scores: E(): FT 2e-31, 39.146% id in 281 aa" FT /protein_id="CAE44707.1" FT /translation="MQRQATPPLFRRGPPAEVRLAVLVILALALLIVDSQLRVLEPVRR FT AVSVALYPFQRAVMAPRDLVQQVDEWINAASLIRSENEALQRQRIELAQVATHAAQLAA FT ENAQLRRLLGVTDTVAQSAVVVEVLYEPPNAFHQRLVFNKGAKSGLAPGMPVIDEGGVV FT GQIVRVTPMTAEAALVTDERVSIPVQVLRNGLRLIAFGANIPGVIEVRYLAANADIKVG FT DTIVTSGVGGLFPAGLPVAKVASVERDTASGFARALGEPLAHPERYRHFLVLQVDVDQA FT ESNRQEADVDGAD" FT misc_feature join(377251..377304,377431..377490,377527..377595, FT 377605..377673) FT /note="4 probable transmembrane helices predicted for FT BP0376 by TMHMM2.0 at aa 32-49, 92-111, 124-146 and FT 150-172" FT CDS 377257..377721 FT /transl_table=11 FT /gene="mreD" FT /locus_tag="BP0376" FT /product="rod shape-determining protein" FT /note="Similar to Escherichia coli rod shape-determining FT protein MreD or B3249 or Z4607 or Ecs4121 SW:MRED_ECOLI FT (P16927) (162 aa) fasta scores: E(): 1.5e-06, 33.333% id in FT 117 aa, and to Pseudomonas aeruginosa rod shape-determining FT protein MreD or Pa4479 TR:Q9HVU2 (EMBL:AE004862) (164 aa) FT fasta scores: E(): 1.5e-09, 31.507% id in 146 aa" FT /protein_id="CAE44708.1" FT /translation="MWGTVLLVWLLSLLPWRQWPGSPDVLVLVIAFWCVHEPRRVGLLT FT AFVFGLLLDVHDAGLLGGHALSYTLTAYGAIALHRRLQRFDLWSQAMHMLPVFFLAQLV FT TQIILAWLAGKWPGWQWAVSVGLTVAIWPLAGWVLHMPQRRYDDVESSAV" FT CDS 377735..379687 FT /transl_table=11 FT /gene="mrdA" FT /gene_synonym="pbpA" FT /locus_tag="BP0377" FT /product="penicillin-binding protein 2" FT /note="Similar to Escherichia coli penicillin-binding FT protein 2 MrdA or PbpA or B0635 or Z0781 or Ecs0673 FT SW:PBP2_ECOLI (P08150) (633 aa) fasta scores: E(): 9.7e-85, FT 40.065% id in 614 aa, and to Pseudomonas aeruginosa FT penicillin-binding protein 2 PbpA or Pb or Pa4003 TR:Q9X6V3 FT (EMBL:AF147448) (646 aa) fasta scores: E(): 3.3e-93, FT 43.472% id in 651 aa" FT /protein_id="CAE44709.1" FT /translation="MFEFKKTGQQQKQRFRLRAWVGGLFALACFGVLAGRFWYLQVDRY FT EGFSERADRNRIAVVPIPPRRGEILDRNGEVLARNYRTYTLEVVPAQAGNLDQLFDRLA FT RVVYISPSDQRRFKRRVGESSRYASLQLRNNLNDTEAAWFSAHSFEFPGVELRARWVRE FT YPQGEAAAHVVGFIGRIAENDIEELDKAGQLGNYRGTDVIGKKGIEKTWEAALHGRTGL FT EEVEVTAGGRPMRTLRRIDPVPGSDIMLSIDLELQKLAEQAFEGRRGALVALDPDTGEV FT LAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLYGTYPIGSTYKPFVALAALE FT LGKRRATDRMPDPGYFEFGGQKFRNAGGAAYGMTDMHRAIVVSSDTYFYSLGPEIGVNA FT LHDFSKQFGFGQITGIDLEGEKAGVLPSTEWKRKAYKDRDRQRWYAGETISVAVGQGYN FT SFTLLQLAQATSTLANSGLYRRPHLVHAIRDSRSGSVNPTEIAPDYRIPLKQENVDVIK FT RAMADVVRAGTARRAFAGAPYQAAGKTGTAQVFSLRGGQYRASAIDERLRDHALFMGFA FT PVEQPRIAVALIVENAGWGASAAAPIARTLFDNWLGRADAPSVVRAGAKPVAAEPEAAA FT LELGATDGPMQERRQ" FT misc_feature 377735..377836 FT /note="Signal peptide predicted for BP0377 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.984) with cleavage site FT probability 0.979 between residues 34 and 35" FT misc_feature 377789..377821 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 377792..377860 FT /note="1 probable transmembrane helix predicted for BP0377 FT by TMHMM2.0 at aa 20-42" FT misc_feature 378494..379561 FT /note="HMMPfam hit to PF00905, Penicillin binding protein FT transpeptidase domain" FT misc_feature 378704..378751 FT /note="ScanRegExp hit to PS00146, Beta-lactamase class-A FT active site." FT CDS 379684..380820 FT /transl_table=11 FT /gene="mrdB" FT /gene_synonym="rodA" FT /locus_tag="BP0378" FT /product="rod shape-determining protein" FT /note="Similar to Escherichia coli rod shape-determining FT protein MrdB or RodA or B0634 or Z0780 or Ecs0672 FT SW:RODA_ECOLI (P15035) (370 aa) fasta scores: E(): 5.6e-36, FT 45.278% id in 360 aa, and to Vibrio cholerae rod FT shape-determining protein RodA or Vc0949 TR:Q9KTF3 FT (EMBL:AE004177) (373 aa) fasta scores: E(): 1.3e-35, FT 48.753% id in 361 aa" FT /protein_id="CAE44710.1" FT /translation="MKRLGLILLRVFTAFDWPLLLILILFTLLGLTVMHSAVGSTDWRF FT AEQSRNFLIAFAAMWAMALVPPNTLMKLALPFYVLGVILLLGVEFFGETSKGATRWLNL FT GVTRIQPSEMMKIAVPMMLAWYFQRHDGAVRIRDFFVAAAMLAAPFVLIVLQPDLGTAL FT LVFGAGFFVIYFAGLSFKLLVPCLLAGIIAIGTLIYYEDQLCEPEVDWVVLHDYQKHRV FT CTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAE FT EFGLYGGVALLVLYGLFMARGLAIASRASSQFGRLLAGAITMMMFIYVFVNVGMVTGIL FT PVVGVPLPFMSYGGTALLTMGIACGILMSISRRRPAPA" FT misc_feature 379684..379800 FT /note="Signal peptide predicted for BP0378 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.985) with cleavage site FT probability 0.961 between residues 39 and 40" FT misc_feature join(379702..379770,379888..379956,380080..380148, FT 380158..380217,380230..380283,380530..380598, FT 380632..380700,380728..380796) FT /note="8 probable transmembrane helices predicted for FT BP0378 by TMHMM2.0 at aa 7-29, 69-91, 133-155, 159-178, FT 183-200, 283-305, 317-339 and 349-371" FT misc_feature 379729..380811 FT /note="HMMPfam hit to PF01098, Cell cycle protein" FT misc_feature 380677..380751 FT /note="ScanRegExp hit to PS00428, Cell cycle proteins ftsW FT / rodA / spoVE signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(380846..381901) FT /transl_table=11 FT /gene="ldh" FT /locus_tag="BP0379" FT /product="putative L-lactate dehydrogenase" FT /EC_number="1.1.1.27" FT /note="Similar to Alcaligenes eutrophus L-lactate FT dehydrogenase Ldh SW:LDH_ALCEU (Q07251) (349 aa) fasta FT scores: E(): 1.4e-89, 66.097% id in 351 aa, and to FT Escherichia coli hypothetical 38.9 kDa protein in dinG-glnQ FT intergenic region YbiC or B0801 SW:YBIC_ECOLI (P30178) (361 FT aa) fasta scores: E(): 5.4e-36, 35.277% id in 343 aa" FT /protein_id="CAE44711.1" FT /translation="MKLSIAQAIAFGQRLLAAQGVPDDIARDVAEHLVESDRVGYTSHG FT LSILPNYRRVLAEGFVKADGRAKLLNDRGAMLAFDGDNGFGQHVGKAVMQQAIERARQY FT GQCIVTLRRTHHLGRMGYYGEMAAEAGLILLAFTNVVNRPPTVAPYGGAQACLTTNPLC FT FAGPLPGGCPPFLVDMATSSIAVNKARVLAARGEPAPDGALIDAQGNPTNDPNALFADP FT PGALLPFGGHKGYAMGLVAELLAGVLSGGGTIQPEHPRNGVATNNMFAILLDPQVDFNA FT DWRTQEVGAFIDYLHACPPQPGVDRVQYPGEYEAMNRARHAEAIEFEGAIWDSLAKLAQ FT DLGAADALPRA" FT misc_feature complement(380888..381901) FT /note="HMMPfam hit to PF02615, Malate/L-lactate FT dehydrogenase" FT CDS complement(381912..383405) FT /transl_table=11 FT /locus_tag="BP0380" FT /product="putative Sodium:sulfate symportert" FT /note="Similar to Escherichia coli putative tartrate FT carrier YgjE or B3063 SW:TTDT_ECOLI (P39414) (487 aa) fasta FT scores: E(): 1.6e-25, 26.141% id in 482 aa, and to FT Alcaligenes eutrophus membrane protein SW:MEMP_ALCEU FT (Q07252) (513 aa) fasta scores: E(): 1.6e-127, 72.525% id FT in 495 aa" FT /protein_id="CAE44712.1" FT /translation="MTAPAAVPAPQSPPKVKIPIGLIAGIIAMVVVLLLPLPAELPPAG FT HRMLAILAFAVVVWITEAVSYEASAIMITTLMAFLLGTAPNVKNPDVLYGTSAAISMAL FT TGFSNSALALVTGALFIAAAMTFTGLDKRIALVTLARVGTSTRRILLGAIAVTIVLSLV FT VPSATARSAAVVPIMLGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLT FT VGFMDKMLGERVAWSDWLIAGVPWSLLMSAVLVFVVLRLLPPESDAIAGGKEAVEASLR FT ELGPMTSAQKRLILVSIMLLLFWSTEGKLHKFDTTSTTYFGLVLLMLPRFGVMTWKDVQ FT TRIPWGAVIVFGVGISLGTALLTTQAGQWLGAQVVAHTGLDHLGPLGIFAILSAFLILI FT HLGFASATALTSAMLPILIAVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVAL FT GTETFTAKQFAKVGIVLTIVGYLLMLLMSVTYWRWLGWM" FT misc_feature complement(381915..383369) FT /note="HMMPfam hit to PF00939, Sodium:sulfate symporter FT transmembrane region" FT misc_feature complement(join(381927..381992,382032..382097, FT 382128..382178,382194..382259,382305..382370, FT 382407..382457,382623..382688,382770..382826, FT 382887..382952,383016..383072,383193..383258, FT 383280..383345)) FT /note="12 probable transmembrane helices predicted for FT BP0380 by TMHMM2.0 at aa 20-42, 49-71, 111-130, 151-173, FT 193-212, 239-261, 316-333, 345-367, 382-404, 409-426, FT 436-458 and 471-493" FT CDS complement(383618..384193) FT /transl_table=11 FT /locus_tag="BP0381" FT /product="putative TetR-family transcriptional regulator" FT /note="Similar to Escherichia coli Ttk protein or B3641 FT SW:TTK_ECOLI (P06969) (198 aa) fasta scores: E(): 1.6e-19, FT 44.693% id in 179 aa, and to Vibrio cholerae FT transcriptional regulator, TetR family vc0214 TR:Q9KVD2 FT (EMBL:AE004111) (210 aa) fasta scores: E(): 1.9e-24, FT 48.148% id in 189 aa" FT /protein_id="CAE44713.1" FT /translation="MASKPGERKTQILHTLAEMLEQPHAARITTSALAARMQVSEAALY FT RHFASKAQMFEGLIEFIETSIFTVVNQIAVSEPYGMGQARKTVAMLLAFAERNRGITRV FT LTGDALVTEDNRLQERINHINDRIEASLKQCLRVAVSDGALPADANIAAHASLLTHLVL FT GRWLRYAQSGWRVAPTTHLEEHLRLALG" FT misc_feature complement(384020..384160) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT misc_feature complement(384047..384112) FT /note="Predicted helix-turn-helix motif with score 1743 FT (+5.12 SD) at aa 28-49, sequence ITTSALAARMQVSEAALYRHFA" FT CDS complement(384243..384989) FT /transl_table=11 FT /locus_tag="BP0382" FT /product="putative hydrolase" FT /note="Similar to Neisseria meningitidis hydrolase, FT putative Nmb0040 TR:Q9K1P1 (EMBL:AE002362) (237 aa) fasta FT scores: E(): 1e-20, 37.674% id in 215 aa, and to Rhizobium FT meliloti conserved hypothetical protein Smc01730 FT TR:CAC41872 (EMBL:AL591783) (258 aa) fasta scores: E(): FT 4.3e-20, 36.058% id in 208 aa" FT /protein_id="CAE44714.1" FT /translation="MQARRYLLRPAARLRRSRRIATAAPERLWLFDLDNTLHDTSHAIF FT PLIDRGMTEAVAETLAVDEATANRLRAEYWRRYGATVIGLVRHHGVDADAFLHRSHNFE FT VAPLVRAETALADKLRRLPGRKVLLTNAPLHYARAVLRHLGLLRQFDSIWAIEQMCMHG FT QFRPKPSDALLRYVLAREGVPAARAVLIEDTLDNLRSARRVGLRTVHVFHPGTPFARGH FT RQRPGYVDLRVNSVSDLLLRRRPLRG" FT misc_feature complement(384348..384914) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS complement(384989..385891) FT /transl_table=11 FT /gene="argB" FT /locus_tag="BP0383" FT /product="acetylglutamate kinase" FT /EC_number="2.7.2.8" FT /note="Similar to Corynebacterium glutamicum FT acetylglutamate kinase ArgB SW:ARGB_CORGL (Q59281) (294 aa) FT fasta scores: E(): 4.9e-39, 46.545% id in 275 aa, and to FT Neisseria meningitidis putative acetylglutamate kinase ArgB FT or Nma1275 TR:Q9JUK2 (EMBL:AL162755) (298 aa) fasta scores: FT E(): 6.6e-60, 60.208% id in 289 aa" FT /protein_id="CAE44715.1" FT /translation="MTDTPDPAAVLSPAVKAAVLSEALPYIRRFHGKTIVVKYGGNAMT FT EERLQRSFAHDVVLLKLVGLNPVVVHGGGPQIDDALRRIGKQGTFVQGMRVTDAETMEV FT VEWVLGGQVQQDIVMMINEVGGKAVGLTGKDGMLIQATKKLMVNKDDPSQPLDIGLVGD FT ITRVEPAVVKALQDDQFIPVISPIGYGEDGTAYNINADVVAGKMAEVLGAEKLLMMTNT FT PGVLDKGGKLLRSLSAQTIDELFADGTISGGMLPKISSSLDAAKNGVNSVHIVDGRVPH FT CLLLEILTDQGVGTMISSH" FT misc_feature complement(385166..385795) FT /note="HMMPfam hit to PF00696, Amino acid kinase family" FT CDS 386153..386941 FT /transl_table=11 FT /locus_tag="BP0385" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3931 TR:Q9HX85 (EMBL:AE004811) (259 aa) fasta FT scores: E(): 3.5e-62, 68.775% id in 253 aa, and to Xylella FT fastidiosa outer membrane protein Xf0873 TR:Q9PF05 FT (EMBL:AE003927) (261 aa) fasta scores: E(): 1.8e-53, FT 57.812% id in 256 aa. Also similar to BP2818, 53.585% FT identity in 265 aa overlap." FT /protein_id="CAE44716.1" FT /translation="MRMNFVRSALLASAFLLAGGAAQAEKLVVGATQVPHAEILEVVKP FT ALAKEGVELDIKVFTDYVQPNLQLADKQLDANFFQHQPYLDTFNKDRKTNLVSVGLVHV FT EPFGGYSKKIKSLAELKDGATIAIPNDPSNSGRALLLLQKQGLLKLKDPSNIVATPIDI FT AENPKKLKFRELEAAMLPRSFDDLDLALINTNYALEAGLVPTRDALFIEGADSPYANLV FT AARPDNKDAPAVKKLVNALHSEAVRKFIIEKYKGAVVPAF" FT misc_feature 386153..386224 FT /note="Signal peptide predicted for BP0385 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.911 between residues 24 and 25" FT CDS complement(387082..387573) FT /transl_table=11 FT /locus_tag="BP0386" FT /product="putative thioredoxin" FT /note="Similar to Treponema pallidum thioredoxin TptrX FT TR:Q9R788 (EMBL:U95250) (185 aa) fasta scores: E(): FT 1.5e-08, 32.143% id in 140 aa, and to Neisseria FT meningitidis thioredoxin, putative Nmb1958 TR:Q9JXN4 FT (EMBL:AE002544) (166 aa) fasta scores: E(): 8e-16, 34.375% FT id in 160 aa" FT /protein_id="CAE44717.1" FT /translation="MKKIALVLIIAVAAGIGGWFMWRPAQTAPDVAFTTLEGQKITMQD FT LRGKVVLVKFWATSCVTCVKQMPDNIANYNQYHPQGYETIAVAMNYDPPNYVLNFAQTR FT KLPFPVALDTSGELAQAFGNVRLTPTAFLIDKQGQIIKRYLGEYDKAEFQATVQKALAG FT " FT misc_feature complement(387493..387573) FT /note="Signal peptide predicted for BP0386 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.921 between residues 27 and 28" FT misc_feature complement(387508..387558) FT /note="1 probable transmembrane helix predicted for BP0386 FT by TMHMM2.0 at aa 5-22" FT CDS complement(387570..388313) FT /transl_table=11 FT /locus_tag="BP0387" FT /product="putative exported protein" FT /note="Similar to Haemophilus influenzae hypothetical FT protein Hi1658 precursor SW:YRAP_HAEIN (P45301) (193 aa) FT fasta scores: E(): 8.2e-20, 39.037% id in 187 aa, and to FT Pasteurella multocida hypothetical protein Pm0649 TR:Q9CN01 FT (EMBL:AE006101) (194 aa) fasta scores: E(): 5.4e-16, FT 36.464% id in 181 aa" FT /protein_id="CAE44718.1" FT /translation="MMPDAKTAARPLLLAAALSAAALTLSACAPLVIGGAAATTAVVVT FT DRRTSGVQLEDQNIAFKAESQIAQKLGNTARVNAMVYGGHVLLTGDAPTEEAKAQATAI FT AQSIENVKAVTNQLTVGPAADFSTRSNDTWLTSKVKTALINTKYVPSGTISVTTSRGVV FT YLMGKVTQAEGDYAANAAAGVGGVARVVKLFETISREEAIRLSGSGTKSGEGSSDGTAA FT QKAPIESGAAPAGSGSNGVEAIPIK" FT misc_feature complement(388200..388313) FT /note="Signal peptide predicted for BP0387 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.551 between residues 38 and 39" FT misc_feature complement(388212..388277) FT /note="1 probable transmembrane helix predicted for BP0387 FT by TMHMM2.0 at aa 12-34" FT misc_feature complement(388230..388262) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(388310..388912) FT /transl_table=11 FT /locus_tag="BP0388" FT /product="probable phosphosugar isomerase" FT /note="Similar to Neisseria meningitidis phosphoheptose FT isomerase LpcA or Nma0340 or Nmb2090 TR:Q9JQM1 FT (EMBL:AL162752) (197 aa) fasta scores: E(): 9.3e-41, FT 56.545% id in 191 aa, and to Pseudomonas aeruginosa FT probable phosphoheptose isomerase Pa4425 TR:Q9HVZ0 FT (EMBL:AE004857) (197 aa) fasta scores: E(): 2.8e-36, FT 51.269% id in 197 aa" FT /protein_id="CAE44719.1" FT /translation="MRAMDMTSRMTSHFRDAMALCEQSADALAAPLAAAVDLLFAALAN FT NGRILACGNGGSAADAQHFIAELVGRFERERLPLAGIALNTDTSIMTAVGNDYGFDEIF FT ERQVHALGQPGDVLVAISTSGNSPNVVRAMETAREREMHVIALTGKGGGVMGELITPHD FT VHLCVPHDRTMRIQEVHIILLHALCDGIDALLLGDTE" FT misc_feature complement(388319..388795) FT /note="HMMPfam hit to PF01380, SIS domain" FT CDS complement(join(388912..389415,389417..389446)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0389" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 10. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT hypothetical protein YraN or B3148 SW:YRAN_ECOLI (P45465) FT (131 aa) fasta scores: E(): 1.6e-11, 46.774% id in 124 aa, FT and to Xylella fastidiosa hypothetical protein Xf0554 FT TR:Q9PFV3 (EMBL:AE003902) (121 aa) fasta scores: E(): FT 2.5e-09, 47.414% id in 116 aa" FT /db_xref="PSEUDO:CAE44720.1" FT variation complement(389416..389417) FT /note="(C)2 in pertussis; (C)1 in parapertussis and FT bronchiseptica" FT CDS 389513..390451 FT /transl_table=11 FT /locus_tag="BP0390" FT /product="putative tetrapyrrole methylase" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smc00416 TR:CAC41773 (EMBL:AL591783) (309 aa) fasta FT scores: E(): 5.7e-38, 49.286% id in 280 aa, and to FT Neisseria meningitidis hypothetical protein Nma0342 FT TR:Q9JWJ7 (EMBL:AL162752) (291 aa) fasta scores: E(): FT 1.4e-37, 46.290% id in 283 aa" FT /protein_id="CAE44721.1" FT /translation="MNQDVLSPAQGDAWSRVADRVAAQHWPAATLYVIATPIGNLGDLG FT LRAWQALVRADVIAAEDTRASRTLLDAWGVSTPLMAAHRHNEASAAQAICERLAQGQRV FT ALVSDAGAPAVSDPGARIVRAVREAGYAVVPVPGPSAVIAALMGSGATSDENPAFAFAG FT FLPAKAVARQRWLRQWCALPAPVVMFESPHRLAATLADLREAGGPARLLTVARELTKRF FT EEIATMPLGEAADWLAADAHRGQGEFVLIVHQAPGAQDDEADPADPRTDALLDALLESL FT SVRDAARVAAKVTGLARDVLYARALARKEQP" FT misc_feature 389600..390214 FT /note="HMMPfam hit to PF00590, Tetrapyrrole FT (Corrin/Porphyrin) Methylases." FT misc_feature 389834..389869 FT /note="ScanRegExp hit to PS01296, Uncharacterized protein FT family UPF0011 signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 390448..391020 FT /transl_table=11 FT /gene="ogt" FT /locus_tag="BP0391" FT /product="methylated-DNA--protein-cysteine FT methyltransferase" FT /EC_number="2.1.1.63" FT /note="Similar to Escherichia coli FT methylated-DNA--protein-cysteine methyltransferase Ogt or FT B1335 SW:OGT_ECOLI (P09168) (171 aa) fasta scores: E(): FT 8.1e-17, 48.598% id in 107 aa, and to Mycobacterium leprae FT putative methylated-DNA--protein-cysteine methyltransferase FT Ogt or Ml1151 SW:OGT_MYCLE (P52982) (165 aa) fasta scores: FT E(): 1.4e-24, 45.342% id in 161 aa" FT /protein_id="CAE44722.1" FT /translation="MNPPSAQATDILYCDTDTPLGPMRLAARGQALCGAWFVDQRDCPA FT AAGWTLDAAHPALRQAAAELEQWFAGRRRAFEVAMQPEGTPFQRQVWQALLELPFGATI FT SYGELARRVGRPKAARAVAGAVGRNPISILIPCHRIIGHDTSLTGFGGGLPRKQALLAH FT EGHRYLSRAARARRVSTTQMELPLGAA" FT misc_feature 390622..390954 FT /note="HMMPfam hit to PF01035, 6-O-methylguanine DNA FT methyltransferase, DNA binding domain" FT misc_feature 390850..390870 FT /note="ScanRegExp hit to PS00374, FT Methylated-DNA--protein-cysteine methyltransferase active FT site." FT CDS complement(391017..391967) FT /transl_table=11 FT /locus_tag="BP0392" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44723.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 391017..391048 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(391017..392069) FT misc_feature complement(391053..391586) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(391644..391709) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(392038..392069) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 392065..392970 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0393" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The insertion occurred near the FT N-terminus. It is not clear whether this insertion affects FT the function of the protein. Similar to Rhizobium meliloti FT hypothetical protein transmembrane Smb20040 TR:CAC48443 FT (EMBL:AL603642) (286 aa) fasta scores: E(): 3.9e-43, FT 45.683% id in 278 aa, and to Mycobacterium smegmatis FT putative membrane protein DcsA TR:Q9Z6F0 (EMBL:AF072874) FT (301 aa) fasta scores: E(): 4e-37, 46.454% id in 282 aa" FT misc_feature 392134..392190 FT /note="Signal peptide predicted for BP0393 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.655) with cleavage site FT probability 0.391 between residues 19 and 20" FT misc_feature 392146..392517 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature join(392197..392265,392302..392361,392371..392439, FT 392458..392517,392545..392604,392623..392691, FT 392719..392787,392806..392874,392887..392940) FT /note="9 probable transmembrane helices predicted for FT BP0393 by TMHMM2.0 at aa 22-44, 57-76, 80-102, 109-128, FT 138-157, 164-186, 196-218, 225-247 and 252-269" FT misc_feature 392572..392949 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT CDS 392967..393626 FT /transl_table=11 FT /locus_tag="BP0394" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2306 TR:Q9I1G9 (EMBL:AE004657) (205 aa) fasta FT scores: E(): 2.9e-42, 57.436% id in 195 aa, and to FT Rhizobium meliloti hypothetical transmembrane protein FT Smc01425 TR:CAC46687 (EMBL:AL591789) (197 aa) fasta scores: FT E(): 2.5e-40, 55.959% id in 193 aa" FT /protein_id="CAE44725.1" FT /translation="MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSG FT LTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLERLPWLYSTLKYGGTAYLLYLAWKI FT ATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIATLVC FT GVVNLPSVGVWAAFGMALRRWLHRPAAVRAFNVGMAVLLVVSLYPVGLDLLALYTG" FT misc_feature join(393000..393068,393126..393194,393213..393272, FT 393432..393500,393537..393596) FT /note="5 probable transmembrane helices predicted for FT BP0394 by TMHMM2.0 at aa 12-34, 54-76, 83-102, 156-178 and FT 191-210" FT CDS 393716..394639 FT /transl_table=11 FT /locus_tag="BP0395" FT /product="putative exported protein" FT /note="Similar to Mycobacterium tuberculosis hypothetical FT 29.7 kDa protein Rv2307c or Mt2364 or Mtcy339.02 FT SW:YN07_MYCTU (Q50658) (281 aa) fasta scores: E(): 7.3e-16, FT 32.491% id in 277 aa, and to Escherichia coli from bases FT 2662068 to 2677236 Bem46 or B2534 TR:P77538 (EMBL:AE000340) FT (293 aa) fasta scores: E(): 9.3e-15, 28.279% id in 244 aa" FT /protein_id="CAE44726.1" FT /translation="MVSLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQ FT RWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDAPTVLYLHGARWNLNGSAFRMEGWT FT RMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLGGAI FT AIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTT FT PMLLLHGTADRVVPHTMSDELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVAD FT FVRDAGRGYAGRQGAPTPLTASRPGT" FT misc_feature 393716..393808 FT /note="Signal peptide predicted for BP0395 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.341 between residues 31 and 32" FT CDS complement(394645..395100) FT /transl_table=11 FT /locus_tag="BP0396" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Sma1780 TR:AAK65640 (EMBL:AE007284) (147 aa) fasta scores: FT E(): 5.4e-17, 39.855% id in 138 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa2880 TR:Q9HZW7 FT (EMBL:AE004714) (171 aa) fasta scores: E(): 1.1e-27, FT 51.064% id in 141 aa" FT /protein_id="CAE44727.1" FT /translation="MSSSSRQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDM FT GVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTMPVRVAHAVGFELGLVLIIVPLAAW FT WLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA" FT misc_feature complement(join(394696..394761,394774..394839, FT 394900..394956,394987..395052)) FT /note="4 probable transmembrane helices predicted for FT BP0396 by TMHMM2.0 at aa 16-38, 48-67, 87-109 and 113-135" FT misc_feature complement(394990..395100) FT /note="Signal peptide predicted for BP0396 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.986 between residues 37 and 38" FT CDS complement(395097..396200) FT /transl_table=11 FT /locus_tag="BP0397" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical 27.8 kDa FT protein in celF-katE intergenic region YdjC or B1733 FT SW:YDJC_ECOLI (P37794) (249 aa) fasta scores: E(): 0.00011, FT 25.993% id in 277 aa, and to Rhizobium loti Mll3087 protein FT TR:Q98H07 (EMBL:AP003001) (272 aa) fasta scores: E(): FT 2.7e-11, 34.420% id in 276 aa" FT /protein_id="CAE44728.1" FT /translation="MTSERYDEGQQPAHHVGPQRGQAGPFHAGDRDGPMGGGRGASDGN FT EPGNLSQQAAHVEEVSPLRNQAGDVRCRRIAVCGDDFGMNEAIDGALIELAGAGRLSAV FT SCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLDPDW FT IDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAP FT GLQFGLPLAEAAKARLIGALGAGALARAAGQEGWQTNRRMLGVYGFTGGPRRYAGLLHH FT WLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHPELGTWLARNGLRIVSLSQVR FT GRQASQESGKVRNVPHFGSFRRLASRL" FT CDS complement(396388..398007) FT /transl_table=11 FT /locus_tag="BP0398" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3556 TR:Q9HY61 (EMBL:AE004776) (549 aa) fasta FT scores: E(): 4.1e-31, 30.059% id in 509 aa, and to FT Salmonella typhimurium hypothetical 61.8 kDa protein in FT pmrG-pmrD intergenic region TR:O52327 (EMBL:AF036677) (548 FT aa) fasta scores: E(): 3.1e-26, 31.445% id in 353 aa" FT /protein_id="CAE44729.1" FT /translation="MTLATRSMQPHAVSPGQARSWPLPAAGWLLLAVGVWLAFLSWMRP FT LALPDEGRYAGVAWDMLRNGSFAVPLIDGMPYFHKPPLYYWLAELSFRLFGVNEWAARL FT PSALAAWASAVALYLFVRRHRDAASATLCVLVLATLPLFFGGAQYANMDMLVAGMITLC FT VLAGADTALRVRGGQAWRAMALATGVCAALAMLAKGLIGLVLPGAILLAWLAWRRDWRG FT LRALLWPPAILAFAVVAVPWFWLMQVRYPGFFQYFFVHQHFERFAQTGFNNVQPFWFYL FT PVIAGLALPWSLWAGGLLRKQFWAADADPDGLRRLALVWLAVIVAFFSMPQSKLVGYIM FT PVLPPLAFLLAEVVMGALRDPAVARATRRMARVSALVAVAICVTAVFVASFNARGSSRE FT LALSLRGELRPDDTLVALHTYPFDLQLYAHAARPMWVVDDWSNPEIPKRDNWRRELYDA FT VQFEPALGERLLVSADTFQQRLCQAPEGSRYWVWGTAADEEAYAPLRGQAARFADARRS FT LWLVLVDEAFKGRVCDGTPTGG" FT misc_feature complement(join(396829..396894,396934..396999, FT 397015..397071,397111..397176,397264..397329, FT 397366..397431,397558..397623,397645..397710, FT 397879..397944)) FT /note="9 probable transmembrane helices predicted for FT BP0398 by TMHMM2.0 at aa 21-43, 99-121, 128-150, 192-214, FT 226-248, 277-299, 312-331, 336-358 and 371-393" FT CDS complement(398004..399062) FT /transl_table=11 FT /locus_tag="BP0399" FT /product="putative glycosyl transferase" FT /note="Similar to Shigella flexneri GtrbI TR:Q9RPZ6 FT (EMBL:AF139596) (306 aa) fasta scores: E(): 1.2e-41, FT 40.000% id in 305 aa, and to Synechocystis sp putative FT glycosyl transferase Sll0501 sll0501 SW:Y501_SYNY3 (Q55487) FT (318 aa) fasta scores: E(): 3.7e-50, 44.118% id in 306 aa" FT /protein_id="CAE44730.1" FT /translation="MFMYTEFRSQLLAGAGTSAAGQSARMAVLAGDGATGVQVSCVVPG FT LNEAANLRVLVPALRACLEQWCASWEIIVVDDGSTDDTAELMAQWSAVEGIRYVQLSRN FT FGKEAALTAGLEAADGDAVICLDADMQHPPELIGDMLAAWRNGADMVYAVRRQRDDEPW FT FKRVGARAFYRLLSTARGVEVPPHAGDFRLMDRRVVEALVALPERTRFMKGLYAWVGFK FT SQAVPYTPQARRHGASHFSAWKLFRLACDGLTAFTTWPLRLVSLIGVLFALLSLSYGGY FT LVADYLISGNAVSGWTTIVTALLFFAGINLISLGVVGEYVARIFDEVKGRPLFIARQRR FT GRAKRAAKARSQ" FT misc_feature complement(join(398100..398165,398211..398276)) FT /note="2 probable transmembrane helices predicted for FT BP0399 by TMHMM2.0 at aa 262-284 and 299-321" FT misc_feature complement(398454..398945) FT /note="HMMPfam hit to PF00535, Glycosyl transferase" FT misc_feature complement(398973..399062) FT /note="Signal peptide predicted for BP0399 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.931) with cleavage site FT probability 0.423 between residues 30 and 31" FT CDS 399192..399686 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0400" FT /product="putative acetyltransferase (pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481. Similar to Streptomyces coelicolor hypothetical FT 20.3 kDa protein Sc1c3.24 TR:O69866 (EMBL:AL023702) (189 FT aa) fasta scores: E(): 1.1e-05, 30.625% id in 160 aa, and FT to Deinococcus radiodurans conserved hypothetical protein FT Dr1396 TR:Q9RUJ0 (EMBL:AE001985) (170 aa) fasta scores: FT E(): 0.34, 32.237% id in 152 aa" FT /db_xref="PSEUDO:CAE44731.1" FT misc_feature 399336..399617 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT repeat_region 399677..400002 FT CDS 399779..400756 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0401" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. Transposase for IS481 element. The FT transposase lacks a stop codon, hence it is extended by 8 FT codons at its C-terminal end." FT /db_xref="PSEUDO:CAE44732.1" FT repeat_region 400003..400728 FT misc_feature 400160..400693 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(400698..400728) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 400952..402157 FT /transl_table=11 FT /gene="gltS" FT /gene_synonym="gltC" FT /locus_tag="BP0402" FT /product="putative sodium/glutamate symport carrier FT protein" FT /note="Similar to Escherichia coli sodium/glutamate symport FT carrier protein GltS or GltC or B3653 SW:GLTS_ECOLI FT (P19933) (401 aa) fasta scores: E(): 1.3e-51, 40.786% id in FT 407 aa, and to Helicobacter pylori glutamate permease FT Hp1506 TR:O26036 (EMBL:AE000648) (408 aa) fasta scores: FT E(): 3.1e-54, 42.928% id in 403 aa" FT /protein_id="CAE44733.1" FT /translation="MISLTPVQSLLACCLVLVAGRILTTRIGVLSRYSIPDPIVGGLLF FT AVLATALDTWGGIQISLETNIKPTLLLIFFGCIGLTADLKLLARGGPRLIAFLLALIPF FT LVLQNAVGLGLAWLLDMHPLMGLIGGTITLVGGHGTGAAYAARFADINNIQDVMALAMT FT AATIGLVLGGIIGGPVAEWLIRRHKLDPRMAGKDANQVLPEVETTAEAPTATSFITSLT FT AVFVTVVVGTYLAGLVEDAPISLPNFLWCLATGAIIRNFGGYVGIRLDDRVSEIIGSIS FT LSLFLGLTMMTLDLSSVVRLAGPLALMLVAQALVCALYAGWAVFRMLKRDYEAAVMAAA FT FCGFAMGATATAIANMQALTRRHGPAPESFIVVPVTGAFLVDILNVIVLTSLIALPFVG FT GM" FT misc_feature join(400970..401038,401066..401125,401159..401212, FT 401240..401308,401321..401389,401432..401500, FT 401597..401665,401693..401752,401771..401830, FT 401858..401926,401945..402013,402083..402151) FT /note="12 probable transmembrane helices predicted for FT BP0402 by TMHMM2.0 at aa 7-29, 39-58, 70-87, 97-119, FT 124-146, 161-183, 216-238, 248-267, 274-293, 303-325, FT 332-354 and 378-400" FT CDS 402154..403665 FT /transl_table=11 FT /locus_tag="BP0403" FT /product="putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE44734.1" FT /translation="MTMFIRWLILSACLLLAACSRAPDTEILQRDVGQTLAATYGPDLF FT DIVALRRMGSATDSTAPPGQTRRVVYYDVVLGLKKDLTLGAWDQPGAAALVSLLGAGPR FT SISGVKSSGNAAGDQIVAHASAIYQRDAEQWVHVAPASFTATEAPSLDTGAPPPVTRQL FT LQTLEQITRSVPYSASSTAQHVVQQELERSVARINGRLARLQKGYPLATGPDKGEYLAF FT GQALAAIGRNEQVRVIPLITGGSADNMAMLRSGAAVAALSQADIAQLAYEGKGPFESQG FT PFSGLRALGSLYPELVHIVVRQGDGIATVGALRGKKIALGPSGSAVRTTLETVLAAHGL FT QPGRDYAVIDTPAAAALPQLSEGRVDAVAQVIGTPAAPLRAALTQARLALLPLDRAAID FT KLVQADPTLMALDIPANTYPSQAAAIPTVGMAALLVTTADLTRDEAAHMVDVVYRAGQD FT LLAAGSAQGAQVSAANAGRGLSIPLHDGAVEAFEKLGAPPLPEGR" FT misc_feature 402154..402219 FT /note="Signal peptide predicted for BP0403 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.619 between residues 22 and 23" FT misc_feature 402178..402210 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(403681..404994) FT /transl_table=11 FT /gene="atoE" FT /locus_tag="BP0404" FT /product="putative short-chain fatty acids transporter" FT /note="Similar to Escherichia coli short-chain fatty acids FT transporter AtoE or B2223 SW:ATOE_ECOLI (P76460) (440 aa) FT fasta scores: E(): 2.5e-76, 47.018% id in 436 aa, and to FT Bacillus halodurans short-chain fatty acids transporter FT AtoE or bh0358 TR:Q9KFW3 (EMBL:AP001508) (441 aa) fasta FT scores: E(): 2.8e-96, 57.437% id in 437 aa. Also similar to FT BP0218, 44.988% identity (46.283% ungapped) in 429 aa FT overlap" FT /protein_id="CAE44735.1" FT /translation="MFKLMSRSAVKMVERYLPDPYVFVVLLTLVAAGAAMIIEGQTPMA FT VVRWWGNGFWGLLTFAMQMLLVLVTGYMLASTPLVKRMLARLASLATSAGGAIILVSVV FT SLAASWINWGFGLVVGALFAKQIARQVRVDYRLLVASAYSGFIIWHGGLAGSIPLTIAT FT EGHFSADKIGIIPTGDTIFAVFNLVIVVAMFILVPLVNRLMLPDEKESVYVDPARLEEA FT SVPASDDDKRPAARLENSRLLAWLIAAGGLAYMFDYYVVRGAGLNLNVINFSFLILAIL FT LHGTPRRLLASLDEAIKGGAGIVIQFPFYAGIMAIMMDSGLAATLSEWFVSIASAATLP FT FWTFISAGIVNIFIPSGGGQWAVQSPIVISAAQALGADMPRVAMAVAWGDAWTNMLQPF FT WALPVLAIAGLKAKDIMGYCIIQLLVTGVIISVGLSFF" FT misc_feature complement(403684..404994) FT /note="HMMPfam hit to PF02667, Short chain fatty acid FT transporter" FT misc_feature complement(join(403693..403749,403930..403995, FT 404041..404106,404143..404199,404212..404268, FT 404386..404451,404512..404577,404614..404664, FT 404677..404733,404770..404835,404881..404931)) FT /note="11 probable transmembrane helices predicted for FT BP0404 by TMHMM2.0 at aa 21-38, 53-75, 87-106, 110-127, FT 139-161, 181-203, 242-261, 265-284, 296-318, 333-355 and FT 415-434" FT misc_feature complement(404797..404853) FT /note="ScanRegExp hit to PS00095, C-5 cytosine-specific DNA FT methylases C-terminal signature." FT CDS complement(405185..405364) FT /transl_table=11 FT /locus_tag="BP0405" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2501 TR:Q9I0Y1 (EMBL:AE004677) (55 aa) fasta FT scores: E(): 0.93, 40.476% id in 42 aa" FT /protein_id="CAE44736.1" FT /translation="MHPDTNTMLIIIAAPVALMIVGFGLRDRNLGLGLLGIGLIAALAT FT IAYKAYITFNSFYY" FT misc_feature complement(join(405203..405268,405290..405340)) FT /note="2 probable transmembrane helices predicted for FT BP0405 by TMHMM2.0 at aa 37-54 and 61-83" FT tRNA complement(405640..405714) FT /note="tRNA Val anticodon CAC, Cove score 85.38" FT CDS complement(405774..406508) FT /transl_table=11 FT /gene="dnaQ" FT /gene_synonym="mutD" FT /locus_tag="BP0406" FT /product="DNA polymerase III, epsilon chain" FT /EC_number="2.7.7.7" FT /note="Similar to Escherichia coli DNA polymerase III, FT epsilon chain DnaQ or MutD or B0215 SW:DP3E_ECOLI (P03007) FT (243 aa) fasta scores: E(): 8.2e-45, 52.301% id in 239 aa, FT and to Salmonella typhimurium DNA polymerase III, epsilon FT chain DnaQ or MutD SW:DP3E_SALTY (P14566) (243 aa) fasta FT scores: E(): 2.4e-44, 51.883% id in 239 aa" FT /protein_id="CAE44737.1" FT /translation="MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNP FT DRDSDPEALAVHGLTTEFLADKPRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQR FT IGRDPLNTHCENIVDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAE FT VWLAMTRGQDALLIDVDDQGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDK FT AVGGACAWRAIEPLPAESGQPG" FT misc_feature complement(405981..406016) FT /note="ScanRegExp hit to PS01258, Apoptosis regulator, FT Bcl-2 family BH2 domain signature." FT misc_feature complement(405990..406502) FT /note="HMMPfam hit to PF00929, Exonuclease" FT CDS complement(406517..408853) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0407" FT /product="probable membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Pseudomonas aeruginosa FT probable Rnd efflux transporter pa4375 TR:Q9HW27 FT (EMBL:AE004853) (1018 aa) fasta scores: E(): 9.5e-114, FT 44.518% id in 757 aa, and to Vibrio cholerae multidrug FT resistance protein, putative Vc0914 TR:Q9KTI8 FT (EMBL:AE004175) (1036 aa) fasta scores: E(): 1.4e-105, FT 41.153% id in 763 aa. Also similar to BP0827, 41.307% FT identity in 765 aa overlap." FT misc_feature complement(406592..408850) FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family" FT misc_feature complement(join(406598..406663,406709..406774, FT 406838..406903,406916..406981,407003..407068, FT 407969..408034,408137..408202,408248..408313, FT 408374..408439,408470..408526,408548..408613)) FT /note="11 probable transmembrane helices predicted for FT BP0407 by TMHMM2.0 at aa 103-125, 132-151, 161-183, FT 203-225, 240-262, 296-318, 618-640, 647-669, 673-695, FT 716-738 and 753-775" FT repeat_region 408852..408882 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 408852..409903 FT CDS 408953..409903 FT /transl_table=11 FT /locus_tag="BP0408" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44739.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS" FT misc_feature 409211..409276 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 409334..409867 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(409876..409903) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(410035..410433) FT /pseudo FT /transl_table=11 FT /gene="fusA'" FT /gene_synonym="fus'" FT /gene_synonym="far'" FT /locus_tag="BP0409" FT /product="N-terminal region of elongation factor G FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP0413. Similar to the N-terminal regions of Escherichia FT coli elongation factor G FusA or Fus or Far or B3340 FT SW:EFG_ECOLI (P02996) (703 aa) fasta scores: E(): 6e-35, FT 85.593% id in 118 aa, and to Pasteurella multocida FT elongation factor G FusA or Pm1356 SW:EFG_PASMU (P57938) FT (700 aa) fasta scores: E(): 1.5e-36, 85.000% id in 120 aa. FT The C-terminal region of this CDS is found in BP0413" FT /db_xref="PSEUDO:CAE44740.1" FT misc_feature complement(410071..410412) FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT misc_feature complement(410236..410283) FT /note="ScanRegExp hit to PS00301, GTP-binding elongation FT factors signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(410844..411314) FT /transl_table=11 FT /locus_tag="BP0410" FT /product="putative universal stress protein" FT /note="Similar to Bacillus subtilis hypothetical 15.9 kDa FT protein in bglH-wapA intergenic region precursor YxiE or FT N17E SW:YXIE_BACSU (P42297) (148 aa) fasta scores: E(): FT 6.3e-09, 33.775% id in 151 aa, and to Agrobacterium FT tumefaciens Agr_c_878p TR:AAK86309 (EMBL:AE007985) (160 aa) FT fasta scores: E(): 2.6e-13, 41.216% id in 148 aa" FT /protein_id="CAE44741.1" FT /translation="MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAAT FT IGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQ FT AAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK" FT misc_feature complement(410874..411215) FT /note="HMMPfam hit to PF00582, Universal stress protein FT family" FT misc_feature complement(411261..411314) FT /note="Signal peptide predicted for BP0410 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.937) with cleavage site FT probability 0.856 between residues 18 and 19" FT CDS complement(411403..411747) FT /transl_table=11 FT /locus_tag="BP0411" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc0924 TR:Q9A9Q0 (EMBL:AE005769) (135 aa) fasta FT scores: E(): 1.6e-09, 42.991% id in 107 aa, and to FT Rhizobium loti Mll8311 protein TR:Q983I8 (EMBL:AP003013) FT (112 aa) fasta scores: E(): 1e-13, 44.860% id in 107 aa" FT /protein_id="CAE44742.1" FT /translation="MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGP FT DQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCT FT NLFAAAQQLG" FT CDS complement(411847..413247) FT /transl_table=11 FT /locus_tag="BP0412" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative FT transcriptional regulator protein Smb20039 TR:CAC48442 FT (EMBL:AL603642) (474 aa) fasta scores: E(): 3.8e-58, FT 40.517% id in 464 aa, and to Pseudomonas aeruginosa FT probable transcriptional regulator Pa5283 TR:Q9HTS1 FT (EMBL:AE004941) (458 aa) fasta scores: E(): 3.7e-44, FT 38.987% id in 454 aa" FT /protein_id="CAE44743.1" FT /translation="MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSR FT FTVVEAYDRLVARGLVQSRHGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLR FT NMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLA FT SMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGA FT RPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPIGHTLSAGAAYDILRLAERHD FT FMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLT FT DLKMLAGLTSPELGERVVHRVLVEGQYQRHIERVRARVNEARLRSIQALQQLGLSVPHE FT PHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQ FT SIAAVMAQ" FT misc_feature complement(413035..413214) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature 413261..414388 FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT CDS 413279..415039 FT /pseudo FT /transl_table=11 FT /gene="fusA'" FT /gene_synonym="fus'" FT /gene_synonym="far'" FT /locus_tag="BP0413" FT /product="C-terminal region of elongation factor G FT (Pseudogene)" FT /note="Pseudogene. The N-terminal region of this CDS is FT BP0409. Similar to the C-terminal region of Escherichia FT coli elongation factor G FusA or Fus or Far or B3340 FT SW:EFG_ECOLI (P02996) (703 aa) fasta scores: E(): 1.3e-149, FT 69.521% id in 584 aa, and to Salmonella typhimurium FT elongation factor G FusA SW:EFG_SALTY (P26229) (703 aa) FT fasta scores: E(): 1.7e-149, 69.178% id in 584 aa. The FT N-terminal region of this CDS is found in BP0409" FT misc_feature 414467..414988 FT /note="HMMPfam hit to PF00679, Elongation factor G FT C-terminus" FT CDS complement(415036..415554) FT /transl_table=11 FT /locus_tag="BP0414" FT /product="putative Mg(2+) transporter" FT /note="Similar to Salmonella typhimurium Mg(2+) transport FT ATPase protein C MgtC SW:ATMC_SALTY (P22037) (231 aa) fasta FT scores: E(): 1.3e-12, 40.972% id in 144 aa, and to FT Agrobacterium radiobacter AttV TR:Q9WWC7 (EMBL:U59485) (194 FT aa) fasta scores: E(): 1e-30, 58.750% id in 160 aa" FT /protein_id="CAE44745.1" FT /translation="MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYE FT RERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGVIIKL FT GNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDD FT KRVVAQPPP" FT misc_feature complement(415072..415461) FT /note="HMMPfam hit to PF02308, MgtC family" FT misc_feature complement(join(415093..415149,415162..415218, FT 415240..415296,415327..415392)) FT /note="4 probable transmembrane helices predicted for FT BP0414 by TMHMM2.0 at aa 83-105, 115-134, 141-160 and FT 164-183" FT CDS 415665..416420 FT /transl_table=11 FT /locus_tag="BP0415" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical FT transmembrane protein Smc03171 TR:CAC47481 (EMBL:AL591792) FT (250 aa) fasta scores: E(): 2.2e-67, 75.410% id in 244 aa, FT and to Agrobacterium tumefaciens Agr_l_786p TR:AAK88966 FT (EMBL:AE008238) (275 aa) fasta scores: E(): 8.8e-68, FT 74.502% id in 251 aa. Also similar to the N-terminal FT regions of BP1903 (51.261% identity in 238 aa overlap), and FT to BP1173 (51.250% identity in 240 aa overlap)" FT /protein_id="CAE44746.1" FT /translation="MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQ FT HQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWK FT ATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIM FT FVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYA FT AMAFSALVEGLNMMARRAREGRGAGAAGG" FT misc_feature join(415707..415775,415836..415892,415920..415973, FT 416031..416099,416142..416210,416229..416288, FT 416316..416375) FT /note="7 probable transmembrane helices predicted for FT BP0415 by TMHMM2.0 at aa 15-37, 58-76, 86-103, 123-145, FT 160-182, 189-208 and 218-237" FT misc_feature 416313..416336 FT /note="ScanRegExp hit to PS00030, Eukaryotic RNA FT Recognition Motif (RRM) RNP-1 region signature." FT CDS 416616..417848 FT /transl_table=11 FT /locus_tag="BP0416" FT /product="conserved hypothetical protein" FT /note="Similar to Rhodococcus spAD45 putative racemase IsoG FT TR:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: E(): FT 6.1e-48, 37.940% id in 398 aa, and to Streptomyces FT coelicolor putative racemase Scf41.21 TR:Q9RJU8 FT (EMBL:AL117387) (403 aa) fasta scores: E(): 5.3e-41, FT 37.317% id in 410 aa" FT /protein_id="CAE44747.1" FT /translation="MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVR FT GIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARL FT GLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYA FT PSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPL FT GPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRT FT QHIHAIYRLVSDDIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDH FT PSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAA FT ARQLPEGTDHD" FT misc_feature 416820..417389 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS 417841..418626 FT /transl_table=11 FT /locus_tag="BP0417" FT /product="probable enoyl-CoA hydratase" FT /EC_number="4.2.1.17" FT /note="Similar to Escherichia coli probable enoyl-CoA FT hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) (262 aa) FT fasta scores: E(): 1.7e-20, 34.221% id in 263 aa, and to FT Pseudomonas putida PhaB TR:O84979 (EMBL:AF029714) (263 aa) FT fasta scores: E(): 9.8e-21, 33.468% id in 248 aa" FT /protein_id="CAE44748.1" FT /translation="MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGA FT DLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSLQAYRSGIQRIPLALYNLEV FT PTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSR FT ACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLRE FT GQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG" FT misc_feature 417880..418410 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS 418693..419664 FT /transl_table=11 FT /locus_tag="BP0418" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1.8e-32, 36.218% id in 312 aa, and to Pseudomonas putida FT hypothetical 34.5 kDa protein in clcB-clcD intergenic FT region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta FT scores: E(): 3.2e-32, 35.294% id in 306 aa" FT /protein_id="CAE44749.1" FT /translation="MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGA FT DTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAA FT VFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTAT FT YQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLA FT VTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEG FT KAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE" FT misc_feature 418693..418764 FT /note="Signal peptide predicted for BP0418 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.873 between residues 24 and 25" FT CDS complement(419675..420592) FT /transl_table=11 FT /locus_tag="BP0419" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Bacillus subtilis als operon regulatory FT protein AlsR SW:ALSR_BACSU (Q04778) (302 aa) fasta scores: FT E(): 1.9e-26, 30.592% id in 304 aa, and to Pseudomonas FT aeruginosa probable transcriptional regulator Pa1826 FT TR:Q9I2R9 (EMBL:AE004609) (301 aa) fasta scores: E(): FT 4.1e-30, 39.781% id in 274 aa" FT /protein_id="CAE44750.1" FT /translation="MELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGV FT QLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYS FT LMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQA FT DHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQ FT EAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNAT FT PTTANFVDMACRLMQTEPAAGQAR" FT misc_feature complement(420158..420586) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(420452..420544) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(420482..420547) FT /note="Predicted helix-turn-helix motif with score 1187 FT (+3.23 SD) at aa 16-37, sequence LNFHRAAERLHMAQPPLSTAIK" FT CDS 420790..421950 FT /transl_table=11 FT /locus_tag="BP0420" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable acyl-CoA FT dehydrogenase Pa1022 TR:Q9I4V2 (EMBL:AE004534) (381 aa) FT fasta scores: E(): 2.4e-29, 33.159% id in 383 aa, and to FT Mycobacterium tuberculosis CDC1551 acyl-CoA dehydrogenase, FT putative Mt3665 TR:AAK48023 (EMBL:AE007168) (385 aa) fasta FT scores: E(): 5.6e-27, 33.508% id in 382 aa" FT /protein_id="CAE44751.1" FT /translation="MGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWM FT GHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAVGAPVSAHWVADRQTA FT PLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRK FT IWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVL FT FDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRCDAAPQRA FT QVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALH FT ASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR" FT misc_feature 420928..421407 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 421264..421314 FT /note="ScanRegExp hit to PS00237, G-protein coupled FT receptors family 1 signature." FT misc_feature 421444..421545 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS 421977..423005 FT /transl_table=11 FT /locus_tag="BP0421" FT /product="putative acyl-CoA dehydrogenase" FT /note="Similar to Mycobacterium tuberculosis CDC1551 FT acyl-CoA dehydrogenase, putative Mt3669 TR:AAK48027 FT (EMBL:AE007168) (318 aa) fasta scores: E(): 1.4e-09, FT 30.132% id in 302 aa, and to Streptomyces coelicolor FT putative acyl-CoA dehydrogenase Scf37.28C TR:Q9RJX3 FT (EMBL:AL133210) (362 aa) fasta scores: E(): 2.6e-05, FT 28.691% id in 359 aa" FT /protein_id="CAE44752.1" FT /translation="MVSTMQQDLYETFARALAGLCPLERVRELEAAADPRAGAARAWNE FT VDALGYGDALSPAEHGGAGLSLADAEGLLRAAGAMALPFPFADTLLARALLRAAGQAVP FT DGPIALGVALPHGAGWRCAPIAGVALAQAVAVEHDGCLALWPAPDAVQPGLFRPRASGA FT PAWRGTPAQAGRAGAPAGAVQAWRNAADAAGMAGAMQAVLDRCVAYVQERQQFGRALGR FT FQAVQQDISMLAEQVAAVAMAARLACASGVLFPDPALAACARLRACEAVPVVCALAHAV FT HGAIGITEELPLGLYTARLHEWRATGMSEDDCAELLGRRVLADGERTLLDVVRGMVSAA FT HA" FT misc_feature 422277..422327 FT /note="ScanRegExp hit to PS00372, PTS EIIA domains FT phosphorylation site signature 2." FT misc_feature 422550..422657 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS 423071..424264 FT /transl_table=11 FT /locus_tag="BP0422" FT /product="probable thiolase" FT /note="Similar to Alcaligenes eutrophus acetyl-CoA FT acetyltransferase PhbA SW:THIL_ALCEU (P14611) (393 aa) FT fasta scores: E(): 1.5e-60, 46.530% id in 389 aa, and to FT Rhizobium meliloti probable thiolase Sma1450 TR:AAK65449 FT (EMBL:AE007266) (396 aa) fasta scores: E(): 7e-83, 60.870% FT id in 391 aa. Also similar to BP0447 (53.684% identity in FT 380 aa overlap)" FT /protein_id="CAE44753.1" FT /translation="MSVHPDPVVIVAARRTPIGAFQGALAHYSAPQLGAHALAAAVRQA FT GLQPDAAQEALMGCCLFAGLGQAPARQAVLGAGLPTDVQATTLSKMCGSGMKAAMLAHD FT MLRAGSADVVLAGGMESMSNAPHLIPKARQGYRLGDGQLLDHMYRDGLQDAYEGRLMGH FT YADLAAREYGFSREQQDAYAHESVLRAQRSVAEGEFAEEIAPIAGLARRGAPAAMVAVD FT ETPGLCDVSRLASLKPVFNADGTVTAGNASSISDGAAALVLTRQAHAERLGLAPQARIV FT GHATAALPPGQFPAAPVRAIARLFERVGWDRDSVDLFEINEAFAVVTMIALRELGLPAE FT RVNVNGGACALGHPVGATGARLIVTLMHALRRRGLRRGVACLCLGGGEATAIAVERA" FT misc_feature 423083..424261 FT /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain" FT CDS complement(join(424313..425515,425514..425945)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0423" FT /product="putative fatty acid CoA ligase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 144. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT probable crotonobetaine/carnitine-CoA ligase CaiC or B0037 FT SW:CAIC_ECOLI (P31552) (522 aa) fasta scores: E(): 9.2e-40, FT 29.899% id in 495 aa, and to Pseudomonas diterpeniphila FT coenzyme A ligase TdtL TR:AAK95584 (EMBL:AF274704) (543 aa) FT fasta scores: E(): 3.7e-55, 37.100% id in 531 aa" FT /db_xref="PSEUDO:CAE44754.1" FT misc_feature complement(join(424595..425515,425514..425825)) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature complement(425372..425407) FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature." FT variation complement(425513..425516) FT /note="GGCC in pertussis; GGatCC in parapertussis" FT CDS complement(426046..426996) FT /transl_table=11 FT /locus_tag="BP0424" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44755.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 426046..426077 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(426046..427098) FT misc_feature complement(426082..426615) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(426673..426738) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(427067..427098) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(427095..428000) FT /transl_table=11 FT /locus_tag="BP0425" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Alcaligenes eutrophus putative regulator FT of catechol degradation CatR TR:Q9EV43 (EMBL:AF042281) (330 FT aa) fasta scores: E(): 2.1e-15, 28.136% id in 295 aa, and FT to Azorhizobium caulinodans nac gene TR:O66393 FT (EMBL:AJ006238) (311 aa) fasta scores: E(): 1.2e-21, FT 33.333% id in 300 aa" FT /protein_id="CAE44756.1" FT /translation="MELRQLRYFVETAHRRSITKAASALHIVQPALTAQIKALEDELGT FT QLLERSARGVSLTVDGEAVLRDAVAILRAVDDLKRRHAAAAHSGRAVKIGIPNGMTRTF FT AGQLIERARQQCSFDIELIEGMSGHLLEWLKSGRLDIAVLFASQPLRQLEVRRLTADSI FT DLVGPPGALDAQRPVAFRDLTGYPLILPNAKHGLTRHIQAQARAQGVELRHHTTLDSIA FT EIKHLVSQGVVYTLLAPMVYRLEMEQGLLSATPVCDPALTRELVTATRRSQEAGDDIAQ FT VRALVHEICGARQDPIAAPG" FT misc_feature complement(427572..427994) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(427860..427952) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(427890..427955) FT /note="Predicted helix-turn-helix motif with score 1219 FT (+3.34 SD) at aa 16-37, sequence RSITKAASALHIVQPALTAQIK" FT CDS complement(428176..428379) FT /transl_table=11 FT /gene="cspA" FT /locus_tag="BP0426" FT /product="cold shock protein" FT /note="Similar to Escherichia coli cold shock protein CspA FT or B3556 SW:CSPA_ECOLI (P15277) (69 aa) fasta scores: E(): FT 9.5e-12, 55.385% id in 65 aa, and to Bordetella pertussis FT cold shock-like protein CspA SW:CSPA_BORPE (Q9Z5R4) (67 aa) FT fasta scores: E(): 2.9e-16, 68.657% id in 67 aa. Also FT similar to BP1770 (68.657% identity in 67 aa overlap), FT BP1772 (71.186% identity in 59 aa overlap), BP2757 (61.905% FT identity in 63 aa overlap), and to BP3871 (54.545% identity FT in 66 aa overlap)." FT /protein_id="CAE44757.1" FT /translation="MQTGIVKWFNDEKGFGFIMPENGGPDLFAHYSEIQGEGHKVLVEQ FT QRVSYVPGHGPKGPMATKITPL" FT misc_feature complement(428179..428379) FT /note="HMMPfam hit to PF00313, 'Cold-shock' DNA-binding FT domain" FT misc_feature complement(428278..428337) FT /note="ScanRegExp hit to PS00352, 'Cold-shock' domain FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 428890..429330 FT /transl_table=11 FT /locus_tag="BP0427" FT /product="putative exported protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc3247 TR:Q9A3F7 (EMBL:AE005988) (108 aa) fasta FT scores: E(): 4, 34.524% id in 84 aa" FT /protein_id="CAE44758.1" FT /translation="MKRLKKALARVANACLGILPPATTAERPNKAHNRHQPGTHAAILS FT PWRVYRIYARPGHLLLRNDQGRIYDLGIMKGVEPHLTYRLFTRGLKGQGFASRTLLLDD FT IARRIEDGEISDELLTLSECTAEPGADLDRGTHTDVSMRLAR" FT misc_feature 428890..428961 FT /note="Signal peptide predicted for BP0427 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.526 between residues 24 and 25" FT CDS complement(429360..430019) FT /transl_table=11 FT /locus_tag="BP0428" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative FT transcriptional regulator, GntR family protein Smb20773 FT TR:CAC49865 (EMBL:AL603647) (228 aa) fasta scores: E(): FT 7e-10, 32.203% id in 177 aa, and to Streptomyces coelicolor FT putative GntR-family regulatory protein Scbac8d1.07C FT TR:CAC37896 (EMBL:AL591084) (263 aa) fasta scores: E(): FT 5.8e-22, 38.164% id in 207 aa" FT /protein_id="CAE44759.1" FT /translation="MEVNRMARMVPPANLRESVIAQLRSQIVSGAAAPGMIYSVPSLAN FT ELGISTTPVREALLELSRSGLVEPLRNRGFRVQAITLQDLENHFDVRVMLESGALATLA FT RQGLTDTAPLVALADEVAQAVKDQDVGQYIESDRSFHEALVSRAGNPLLTRMIMHLRAD FT MRLYGINSEEGRVRQRASVEEHYEMIDLAVKQQPDAIVALITRHIESWKPLFAAAL" FT misc_feature complement(429789..429965) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT CDS complement(430105..431745) FT /transl_table=11 FT /locus_tag="BP0429" FT /product="delta-1-pyrroline-5-carboxylate dehydrogenase FT precursor" FT /EC_number="1.5.1.12" FT /note="Similar to Homo sapiens FT delta-1-pyrroline-5-carboxylate dehydrogenase precursor FT AldH4a1 or P5cdh or AldH4 SW:PUT2_HUMAN (P30038) (563 aa) FT fasta scores: E(): 7.8e-101, 50.094% id in 531 aa, and to FT Mycobacterium tuberculosis delta-1-pyrroline-5-carboxylate FT dehydrogenase RocA or Rv1187 or Mtv005.23 TR:O50443 FT (EMBL:AL010186) (543 aa) fasta scores: E(): 1.7e-118, FT 58.868% id in 530 aa" FT /protein_id="CAE44760.1" FT /translation="MRPSVNSLMNTSHIANEPVLDYRPGSAERQCLANALDALRVAQSH FT VPLVIGGQRQRGVAARALHCPHDHGHTLGMVEQADELTAGAAVQAAVAAQAEWAAMPFG FT ERAAIFLRAAELLAGPWRQTLNAATMAGQSKTVHQAEIDSACELIDFLRFNVAFAERLQ FT QSQPLSTHGALNRLDYRPLEGFVYAVTPFNFTAIGGNLPCAPALMGNTVVWKPAFTASL FT SNYLILELLEAAGLPPGVINFVPGDSAAVSAAVLRSADFAGLHFTGSTAVFDGLWQQVA FT RNLPGYRTYPRLVGETGGKDFVLAHASADPETLGVALLRGAFEYQGQKCSAASRAYVPA FT SLWPRARQALLDNLATVRMGDVADFGNFMGALIDRKAYERVMRYIDRAPAQGSTVLAGG FT RGDDRVGYFVQPTVIEAADPKAATMQEEIFGPVLSVHVYPDAGWNDVLALVDQTSPYSL FT TGAVFANDRQAIGQAAAALRFAAGNFYVNDKPTGAVVGQQPFGGTRRSGTNDKAGSMLN FT LQRWVSPRTVKETWVPARHYGYPSMDDAA" FT misc_feature complement(430153..431580) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature complement(430744..430779) FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT misc_feature complement(430840..430863) FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT CDS complement(431742..433205) FT /transl_table=11 FT /locus_tag="BP0430" FT /product="short-chain fatty acids transporter" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2002 TR:Q9I2A7 (EMBL:AE004626) (474 aa) fasta FT scores: E(): 7.3e-97, 53.564% id in 463 aa, and to FT Haemophilus influenzae short-chain fatty acids transporter FT AtoE or Hi0772 SW:ATOE_HAEIN (P44051) (447 aa) fasta FT scores: E(): 9.5e-33, 28.788% id in 462 aa" FT /protein_id="CAE44761.1" FT /translation="MPNNHLAAAAPAQGRQAIASPMERFSQAMVAWAEKWFPDAYVFVV FT VACAVVALGAVLHGGDPLAVSKAFGEGFWSIIPFTMQMAMVAITGYVLALSPPVARLLR FT ALAHVPSTPRGAVVFIGTLSILLSLVNWGLSLIFSGLLVREMARRTDLRLDYRAAGAAG FT YLGLGCGFTLGMSSSAAQLQATPASIPASLMPITGVIGFSETILTWQNLVVVILVTVVS FT GLVCYFTAPSPERSLTAQDLGVDLTEPEAQAAQRQRPGDYLEFSPWLTVAVVGLASGWL FT YLTFRSGNPFITMSQLNTYNFVFLLLGLLLHWRPRSFLESFGRAMPSIGGVMLQFPFYG FT GIGYVLTKVANVQGHTLSDAIAHWFVSLAHDSSVFSILVSIYSAFLGFFIPSAGGKWVI FT EAPYIMDAANQIQAHLGWTVMVYNIAETLPNFINPFWMLPLLGILRLKSKDLVGYTAMQ FT FLVHFPIVVAAGAILMHTFSYVPPVIPGQ" FT misc_feature complement(431784..433145) FT /note="HMMPfam hit to PF02667, Short chain fatty acid FT transporter" FT misc_feature complement(join(431787..431852,432021..432086, FT 432165..432230,432267..432323,432354..432419, FT 432522..432587,432666..432731,432795..432860, FT 432921..432986,433026..433082)) FT /note="10 probable transmembrane helices predicted for FT BP0430 by TMHMM2.0 at aa 41-60, 73-95, 115-137, 158-180, FT 206-228, 262-284, 294-313, 325-347, 373-395 and 451-473" FT CDS complement(433236..436622) FT /transl_table=11 FT /locus_tag="BP0431" FT /product="putative molybdopterin oxidoreductase" FT /note="Similar to Salmonella typhimurium thiosulfate FT reductase precursor PhsA SW:PHSA_SALTY (P37600) (758 aa) FT fasta scores: E(): 6.8e-17, 23.279% id in 799 aa, and to FT Archaeoglobus fulgidus molybdopterin oxidoreductase, FT molybdopterin binding subunit Af1203 TR:O29065 FT (EMBL:AE001021) (741 aa) fasta scores: E(): 2.9e-26, FT 26.489% id in 789 aa" FT /protein_id="CAE44762.1" FT /translation="MGKGNMKQVTGYCTLCRSRCGSVNHVENGRLVAVTPLAGHPTGGA FT LCAKGRAAPEMMAESHRLLRPLRRTNPRGAADPGWREIEWSEALDEVAARLAVARRRDG FT AESVAFAVTTPSGTPMVDSFEWVERFVRVFGSPNLIYAVEVCGWHKDYAHALTFGRGIG FT VPDLEHTDTMLLWGHNPARTWLAQAARIAAARQRGARVVVVDPNREGSSQQADLWLRVR FT PGADGALALGAIRHLLHTGRFDHDFVARWSNGPYLVDGASGALLRAVDLWPDADPAARV FT VMQDGSPAASGRGADTARAELFGSWTLRLHDGRACEAVTVMHALRVAVERYTPDEVARL FT AWLDEAELAQFNAIFENAPRLSYHSWTGVGQHTNATQTDRAIATLYALTGACDRKGGNL FT WTVAPPYRAVNGYRELLSPVQRAKALGLDELPLGPPSLGWITARDFCRAVLQQDPYPVR FT TLVSFGSNLLVSQAETARNLEALQALDFHVHVDMSMNPTAMNADIVLPANMPWEREALK FT LGFEITQAAVEHVQLRPRMVEPAGESRADYEIVLELARRLGLRDAFFGADMDACWNHQL FT APLGIDVQALRRQPEGIRFPQPFVHEKYKAVRDGQPVGFPTQDGRVQIHCAALRDIGQP FT ALPVHVEPADTPARHAGAYPLVMSTAKSGWFVHSSHRYVASLRRKSPEPQVYLSVQAAR FT ARGIASGDWVRVRTPYGEVALRAKINADLHENVAIAEFGWWQGCEGLGRVDGAIVGPAS FT SNINAIMTDRHRDPVSGSVPLRATVCDIVRDDARNRGSWSGAREFVLAQKRGIAHDVAE FT FRLLPCDAQALPDFLPGQHVIVSMPGGAARRAYSLTGPNREPAHLSIAVRRVRDGDGPA FT GVMSNALHELAEGARVLLSAPAGVFTPPLRTARPVILMASGIGITPFHGYLEALAQDAG FT PAPSVLLVHACRDGSSHPYGAELKRLAQRIGSVCTLTVYAEPASDDAPGRDYQQRGRLD FT FAWLPPATVAARPLVYLCGSPGFLAFCTDALAARGIPRFDIFSETFTSEKRVPATLAPQ FT PIEIEAEQGGFTWDPSAGTLLDAAERAGLSLPSGCRVGQCESCAMHIVSGQVAHLIDFD FT GSADTCLTCQAVPITPLTLRR" FT misc_feature complement(433257..433469) FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature complement(433563..433916) FT /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding FT domain" FT misc_feature complement(434289..434657) FT /note="HMMPfam hit to PF01568, Molydopterin dinucleotide FT binding domain" FT misc_feature complement(434961..435167) FT /note="HMMPfam hit to PF00384, Molybdopterin FT oxidoreductase" FT misc_feature complement(435447..435479) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(436764..437168) FT /transl_table=11 FT /locus_tag="BP0432" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4173 TR:Q9HWK8 (EMBL:AE004833) (132 aa) fasta FT scores: E(): 1.7e-40, 75.194% id in 129 aa, and to FT Escherichia coli O157:H7 EDL933 Orf, hypothetical protein FT YjgH TR:AAG59447 (EMBL:AE005657) (131 aa) fasta scores: FT E(): 3.7e-30, 62.791% id in 129 aa" FT /protein_id="CAE44763.1" FT /translation="MSARNVVFPAGRQALYDRNRYSPAIRSNGFLFVSGQVGSQEDGSP FT KQGLQEQVRQAFDNLNAILAAAGCSFEDVVDVTVFMVDPQSRFEQIWEVVPEYWGQAPH FT PTLTAVGVTWLYGFDFEIKVIAKLPRAGEG" FT misc_feature complement(436785..437144) FT /note="HMMPfam hit to PF01042, YjgF family" FT CDS 437312..438298 FT /transl_table=11 FT /locus_tag="BP0433" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa4174 TR:Q9HWK7 (EMBL:AE004834) FT (307 aa) fasta scores: E(): 3.7e-80, 70.588% id in 306 aa, FT and to Rhizobium meliloti putative transcription regulator FT protein Smc01092 TR:CAC41866 (EMBL:AL591783) (296 aa) fasta FT scores: E(): 5.1e-50, 46.918% id in 292 aa" FT /protein_id="CAE44764.1" FT /translation="MDRFDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLR FT VRLLNRTTRKVNATADGAAYYERVQQLLADLEDAETSLSGASATPRGRLRVDVPSPFAS FT TILVPALPAFQARYPDILLHLGVSDREVDLIDENVDCVIRGGQISNLSLAARHVGDLQL FT GVYAAPGYLARAGVPAHPGELQDARHRIVGFSWSRARRLFPCAMQRADERIEVAGRHAL FT LLDEGNAYLAAGLAGMGVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHV FT SAKLRAFIDWIVELMARHAPVTDAPPPRRSARLPGGPDAAPPDITGA" FT misc_feature 437321..437740 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 437360..437425 FT /note="Predicted helix-turn-helix motif with score 1530 FT (+4.40 SD) at aa 17-38, sequence GSFTKAADTLHMSKTSVTQLVQ" FT misc_feature 437363..437455 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(join(438285..438602,438601..439248)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0434" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 216. The frameshift occurs within FT a polymeric tract of (CG)4. The sequence has been checked FT and believed to be correct. Similar to Rhizobium meliloti FT conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 4.2e-39, FT 45.070% id in 284 aa, and to Comamonas testosteroni OrfJ FT protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: FT E(): 4.3e-36, 39.048% id in 315 aa" FT /db_xref="PSEUDO:CAE44765.1" FT variation complement(438602..438609) FT /note="(CG)4 in pertussis; (CG)5 in parapertussis" FT misc_feature complement(439186..439248) FT /note="Signal peptide predicted for BP0454 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 21 and 22" FT CDS complement(439312..440544) FT /transl_table=11 FT /locus_tag="BP0435" FT /product="putative dehydratase/racemase" FT /note="Similar to Rhodococcus erythropolis putative FT dehydratase/racemase TR:Q9AH11 (EMBL:AF323606) (400 aa) FT fasta scores: E(): 2.6e-21, 29.398% id in 415 aa, and to FT Caulobacter crescentus hypothetical protein Cc3562 FT TR:Q9A2J9 (EMBL:AE006014) (433 aa) fasta scores: E(): FT 7.5e-21, 29.056% id in 413 aa" FT /protein_id="CAE44766.1" FT /translation="MNLDFLKGVRVIESSAFIAAPLAGLTLAQFGAEVIRLDMTGGGID FT YERMPRMPGGTSLYWTGLNKQKRSVALDLRKPEGRDLARKLVCAPGPDAGILLTNIGVS FT WLSHAALAEGRPDVITCTIEGNADGSSAVDYTVNCATGYPHATGDGREPVNSPLPAWDA FT CCGYQAAMAVVSVVLRRRQTGQGAELRLALSDVAFALMSHLGTLAQAELLGEDREPLGN FT HLYGAFGRDFVTRDGNRVMVAAISKGQWQSLVRTCGLAEAVAAIEARTGAKLAEEAQRF FT AHRDAIAAACEPWFRARMLAQVRTALDAGGVCWGLYQTATQMLARDGRAGSANPLFERI FT ATAGAGEHWALGTSVREPRAMRRPTQGASRLGQHTDQVLGELLGLSARQLSDLHAAGVV FT AGPSGDPRGAH" FT misc_feature complement(439360..439425) FT /note="Predicted helix-turn-helix motif with score 1034 FT (+2.71 SD) at aa 374-395, sequence HTDQVLGELLGLSARQLSDLHA" FT misc_feature complement(439786..440337) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS complement(440544..441038) FT /transl_table=11 FT /locus_tag="BP0436" FT /product="conserved hypothetical protein" FT /note="Similar to Salmonella enteritidis FkbR2 =TR:AAK97549 FT (EMBL:AF376036) (175 aa) fasta scores: E(): 1.7e-27, FT 55.634% id in 142 aa, and to Streptomyces hygroscopicus FT varascomyceticus FkbR2 TR:Q9KIF1 (EMBL:AF235504) (175 aa) FT fasta scores: E(): 7e-27, 52.055% id in 146 aa" FT /protein_id="CAE44767.1" FT /translation="MSMDAKSMLLARGRLLEDFKTGDQYAHWPGRTITEADNIQFSLLT FT MNRHPTHCDHHYASQTEFGKPLVNSGLTLAIVLGMSVDDISANAVANLGWQEIELLAPV FT HPGDTVYARSEVLSVRESKSRPGQGVVTVRTEGVRADGVVFMRFVRSCLVPSRASLAGA FT R" FT misc_feature complement(440622..440987) FT /note="HMMPfam hit to PF01575, MaoC like domain" FT CDS 441170..442132 FT /transl_table=11 FT /locus_tag="BP0437" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli cyn operon FT transcriptional activator CynR or B0338 SW:CYNR_ECOLI FT (P27111) (311 aa) fasta scores: E(): 2.3e-21, 31.119% id in FT 286 aa, and to Rhizobium meliloti putative transcriptional FT regulator protein Smb20123 TR:CAC48523 (EMBL:AL603642) (298 FT aa) fasta scores: E(): 7.4e-25, 30.104% id in 289 aa" FT /protein_id="CAE44768.1" FT /translation="MGKEKSRPLPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTG FT QIKQLEAQLGVDLFHRTTRQVRLTAEGAQLLESARRAAHEMENGLRQIQETVDLKRGRI FT FLSCSTTVSSTRLAPILAAFERDYPGVEVFVRELTSGDMFETVRREQADFGIGPIMELP FT EFDFEPILTENLYAVVPRNLFPDTAEQITLARLASMPLLLLNPGTALRALIDDTARSRG FT LTINAKFQFSQAQTLISMATAGLGAAVLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVR FT LRHRKLTPAAARLAQLVRDLIHGPLGRRTARATTRRPSA" FT misc_feature 441209..441637 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 441248..441313 FT /note="Predicted helix-turn-helix motif with score 1062 FT (+2.80 SD) at aa 27-48, sequence CSFRQAAELSHRSQAAVTGQIK" FT misc_feature 441251..441343 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(442110..443363) FT /transl_table=11 FT /locus_tag="BP0438" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc3562 TR:Q9A2J9 (EMBL:AE006014) (433 aa) fasta FT scores: E(): 1.5e-66, 42.750% id in 400 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa3733 FT TR:Q9HXQ9 (EMBL:AE004792) (409 aa) fasta scores: E(): FT 2.3e-59, 40.786% id in 407 aa" FT /protein_id="CAE44769.1" FT /translation="MQSFYQEPAVAADLKEAPHPPKALSGLRVLDIATFLAAPFCGTIM FT ADFGADVIKIEQPRGGDSLRKFGTPSPCGDTYMWMSEARNKRFVTLDLRTPEGAALFKE FT LVRESDVVLENFRPGTLEKWGLGYDVLSELNPGLILLRVSAYGQDGPKREEPGFARIAH FT AFGGLAHLAGEPDGPPVVPGSTSLADYISGLWGAIGVLMALQARNHTGLGQVVDIGLYE FT SVFRLLDELAPVYAATGFVRRRLGADVPNVAPHSHYQTRCGQWVAIACSNDRMFERLAS FT AMGAPGLAGDARFATAAARAENRQAINALVAAWSARFDLQALLDLCRNEGVPCSKVYSI FT EDIFQDEQYRARGNLMEVDDPRIGKTVLPASVPRLSGTPARFLRAGGALGQDNAGVYEE FT LLGVCGERLAALRQTGVV" FT misc_feature complement(442527..443099) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT repeat_region 443383..443414 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 443383..444435 FT CDS 443485..444435 FT /transl_table=11 FT /locus_tag="BP0439" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44770.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 443743..443808 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 443866..444399 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(444404..444435) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(444432..444776) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0440" FT /product="N-terminal region of isovaleryl-CoA dehydrogenase FT (Pseudogene)" FT /EC_number="1.3.99.10" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP0444. Similar to Pseudomonas aeruginosa probable acyl-CoA FT dehydrogenase Pa2015 TR:Q9I296 (EMBL:AE004628) (387 aa) FT fasta scores: E(): 1.2e-31, 73.684% id in 114 aa, and to FT Rhizobium meliloti putative isovaleryl-CoA dehydrogenase FT protein TR:CAC49100 (EMBL:AL603644) (387 aa) fasta scores: FT E(): 8.5e-26, 66.972% id in 109 aa" FT /db_xref="PSEUDO:CAE44771.1" FT misc_feature complement(444435..444749) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS complement(444990..445364) FT /transl_table=11 FT /locus_tag="BP0441" FT /product="MerR-family transcriptional regulator" FT /note="Similar to Rhizobium loti probable transcriptional FT regulator Mll1317 TR:Q98KU4 (EMBL:AP002997) (128 aa) fasta FT scores: E(): 1.2e-16, 44.915% id in 118 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT Pa2016 TR:Q9I295 (EMBL:AE004628) (134 aa) fasta scores: FT E(): 1.9e-16, 50.000% id in 122 aa" FT /protein_id="CAE44772.1" FT /translation="MSTWTISELAREFDITPRTIRFYEDQGIVSPLRDGRNRVYSTRDR FT ARLKLALRGKRLGLLLSEIRSLIDMYDGPGDTAPQLRHYLTILAQHRATLTQQQRDIED FT TLAEIAQQELQCQRLLAQKQ" FT misc_feature complement(445245..445346) FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT proteins, merR family" FT misc_feature complement(445290..445355) FT /note="Predicted helix-turn-helix motif with score 2015 FT (+6.05 SD) at aa 4-25, sequence WTISELAREFDITPRTIRFYED" FT CDS 445439..446497 FT /transl_table=11 FT /locus_tag="BP0442" FT /product="metallo-beta-lactamase family protein" FT /note="Similar to Caulobacter crescentus FT metallo-beta-lactamase family protein Cc0395 TR:Q9AB39 FT (EMBL:AE005712) (317 aa) fasta scores: E(): 2.2e-44, FT 39.812% id in 319 aa, and to Deinococcus radiodurans FT conserved hypothetical protein Dr2076 TR:Q9RSP8 FT (EMBL:AE002043) (347 aa) fasta scores: E(): 1.8e-14, FT 29.969% id in 327 aa" FT /protein_id="CAE44773.1" FT /translation="MNPNEQKLQYPWDQTQPEPGVALVVAEGVKWIRMPLPFALDHINL FT WLLRDEIDGRQGWTIVDCGIARDEVKTIWEQVFENELEGLPVLRVLVTHMHPDHIGLAH FT WLCERWNAPLWISMTDFMVASLWSRRTDGGASGGQAAVEHFARHGLTDTDAQEQIRQRA FT GYYPNLVSAVPSRYTRLLHGDEVAIGGHPWRVIVGYGHAPEHVSLFSPAHKVLISSDMV FT LPRISTNVSVFDHEPDANPLPLYLRSLDRYDDLPADTVVLPSHGRPFVGLHERIAQQHA FT HHDERLAEVLQACATPQSTADIVPVLFKRKLDLHQLTFAMGEALAHLHALYFEGKLKRR FT TDADGIVRFQAA" FT misc_feature 445550..446233 FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily" FT CDS complement(446521..447471) FT /transl_table=11 FT /locus_tag="BP0443" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44774.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 446521..446552 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(446521..447572) FT misc_feature complement(446557..447090) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(447148..447213) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(447542..447572) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 447571..448407 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0444" FT /product="C-terminal region of isovaleryl-CoA dehydrogenase FT (Pseudogene)" FT /EC_number="1.3.99.10" FT /note="Pseudogene. This CDS is the C-terminal region of FT BP0440 which was disrupted by the insertion of IS481 FT element. Similar to Solanum tuberosum isovaleryl-CoA FT dehydrogenase precursor Ivd2 TR:Q9FS87 (EMBL:AJ278988) (401 FT aa) fasta scores: E(): 3.2e-70, 67.391% id in 276 aa, and FT to Rhizobium meliloti putative isovaleryl-CoA dehydrogenase FT protein TR:CAC49100 (EMBL:AL603644) (387 aa) fasta scores: FT E(): 3.2e-79, 75.451% id in 277 aa" FT misc_feature 447571..448383 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 447613..447651 FT /note="ScanRegExp hit to PS00072, Acyl-CoA dehydrogenases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 448264..448323 FT /note="ScanRegExp hit to PS00073, Acyl-CoA dehydrogenases FT signature 2." FT CDS join(448446..449687,449691..450305) FT /pseudo FT /transl_table=11 FT /gene="aceK" FT /locus_tag="BP0445" FT /product="isocitrate dehydrogenase kinase/phosphatase FT (Pseudogene)" FT /EC_number="2.7.1.116" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Escherichia coli isocitrate FT dehydrogenase kinase/phosphatase AceK or B4016 FT SW:ACEK_ECOLI (P11071) (578 aa) fasta scores: E(): 8.7e-78, FT 41.426% id in 589 aa, and to Pseudomonas aeruginosa FT isocitrate dehydrogenase kinase/phosphatase AceK or Pa1376 FT TR:Q9I3W8 (EMBL:AE004567) (577 aa) fasta scores: E(): FT 1.6e-84, 43.294% id in 589 aa" FT /db_xref="PSEUDO:CAE44776.1" FT misc_feature 449424..449447 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT variation 449688..449690 FT /note="in-frame TAG stop codon in pertussis; GAC in FT parapertussis and bronchiseptica" FT CDS 450353..451522 FT /transl_table=11 FT /locus_tag="BP0447" FT /product="acetyl-CoA acetyltransferase" FT /EC_number="2.3.1.9" FT /note="Similar to Clostridium acetobutylicum acetyl-CoA FT acetyltransferase Thl or Cac2873 SW:THL_CLOAB (P45359) (392 FT aa) fasta scores: E(): 4e-66, 50.674% id in 371 aa, and to FT Pseudomonas putida FadaX fadaX TR:Q9AHY0 (EMBL:AF290950) FT (397 aa) fasta scores: E(): 4e-84, 61.579% id in 380 aa" FT /protein_id="CAE44777.1" FT /translation="MLSFPSPARPWAACWACLSGLAAHELGSAAIKAAIERAGIKPEQV FT DEVIMGNVLQAGQGQAPARQAALGAGLPLGVGCTTIHKVCGSGLKAAMFGHDLLTADSV FT DVVVAGGQESMSNAPYLLLKGRQGYRYGHNTVYDHMALDGLEDAYDRGKAMGVFAEDCA FT TKYSFTREQQDAFSLESLRRARAASEDGSFKWEITPVTVAGRKGDTVIDTDEAPTKAMP FT EKIPTLKPAFKKDGTVTAANSSSISDGAAAMVLMRASTAEKLGVKPLARIVAHAQHAQE FT PNWFTTAPVGALKNLFKKTGWQASDVDLYEINEAFAVVTMATMKDFDLPHDKVNVHGGA FT TALGHPIGASGARLMATLVGALRKTGGKRGVATLCIGGGEAVAMAIEML" FT misc_feature 450353..450427 FT /note="Signal peptide predicted for BP0447 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.625) with cleavage site FT probability 0.181 between residues 25 and 26" FT misc_feature 450368..451519 FT /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain" FT misc_feature 451460..451501 FT /note="ScanRegExp hit to PS00099, Thiolases active site." FT CDS 451617..453230 FT /transl_table=11 FT /gene="accB" FT /locus_tag="BP0448" FT /product="carboxyltransferase subunit of acetyl-CoA FT carboxylase" FT /EC_number="6.4.1.4" FT /note="Similar to Myxococcus xanthus acetyl-CoA carboxylase FT carboxyltransferase AccB TR:Q9FAF6 (EMBL:AB039884) (538 aa) FT fasta scores: E(): 1.7e-93, 47.330% id in 543 aa, and to FT Homo sapiens 3-methylcrotonyl-Coa carboxylase subunit MccB FT TR:AAK49409 (EMBL:AF261884) (563 aa) fasta scores: E(): FT 8.1e-142, 68.182% id in 528 aa" FT /protein_id="CAE44778.1" FT /translation="MPMPIIESRIDTRSQDYADNARAMQAQLDDLNQKLARTAQGGSET FT ARAKHVGRGKLLPRERVEQLVDPGSPFLELSPMAAHGMYGDEAPGAGMITGVGRIAGTE FT CVIVCNDATVKGGTYYPMTVKKHLRAQEIAAQNRLPCVYLVDSGGANLPRQDEVFPDRD FT HFGRIFYNQAVMSSQGIAQIAVVMGSCTAGGAYVPAMCDESIIVRDQGTIFLGGPPLVK FT AATGEEVSAEDLGGGDVHTRLSGVADHLAANDMHALQLARNAVARLNRAKPAALALAPV FT REPRYDASELNGIIPADTRKPYDVREVIARIVDGSEFDEFKARYGTTLVTGFAHIHGMP FT VGIVANNGILFSESAQKGAHFIELCAQRKIPLVFLQNITGFMVGRKYENEGIARHGAKM FT VTAVATAAVPKFTILIGGSFGAGNYGMCGRAYSPRMLFMWPNARISVMGGEQAASVLAT FT VKRDGIEARGAQWSGAEEDAFKQPIREQYEREGHPYYATARLWDDGIIAPADTRRVLGL FT ALSAALNAPIEDTRFGVFRM" FT misc_feature 451719..453221 FT /note="HMMPfam hit to PF01039, Carboxyl transferase domain" FT CDS 453277..455298 FT /transl_table=11 FT /gene="accA" FT /gene_synonym="accC" FT /gene_synonym="FabG" FT /locus_tag="BP0449" FT /product="biotin carboxylase subunit of acetyl-CoA FT carboxylase" FT /EC_number="6.4.1.4" FT /note="Similar to Myxococcus xanthus acetyl-Coa Carboxylase FT biotin carboxylase subunit AccA TR:Q9FAF5 (EMBL:AB039884) FT (573 aa) fasta scores: E(): 8.6e-85, 46.667% id in 570 aa, FT and to Escherichia coli biotin carboxylase AccC or FabG or FT B3256 SW:ACCC_ECOLI (P24182) (449 aa) fasta scores: E(): FT 6.6e-76, 51.106% id in 452 aa. Also similar to BP0889 FT (50.224% identity in 446 aa overlap), and BP2996 (47.903% FT identity in 453 aa overlap)" FT /protein_id="CAE44779.1" FT /translation="MFSTLLIANRGEIACRVAATARRMGLRTVAVYSDADANARHVAAC FT DVAVHIGGAEPRASYLRADAILQAARDTGAQAIHPGYGFLSENEGFAEAVAQAGMVFVG FT PPAGAIAAMGSKSAAKALMERAGVPLVPGYHGEDQDPQFLRQQADAIGYPVLIKASAGG FT GGKGMRVVEESAAFADALASCQREASASFGDDRVLIERYLQKPRHIEIQVFADSHGNCV FT YLFERDCSVQRRHQKVIEEAPAPGMTPERRRAMGEAAVAAARAVGYVGAGTVEFIAEPD FT GRFYFMEMNTRLQVEHPVTEMITGHDLVEWQLRVAASQPLPAAQDELRLDGHAIEARIY FT AENPEKGFLPSIGTLAYLGLPAHTAFANGEVRVDGGVRMGDTITPYYDPMIAKLIVHGA FT DREQARARMIQALAHTQAVGVQTNAAFLGRLMRDEAFATADLDTGLIERRRATLLPEPQ FT PAGADVLALASAAVLVRQGLAQPQGEAGKTADPWDARDGWRLGGRYRQTLCWVDNGERR FT DIEITREGGQWRIGAAPAAGQAFSWHAQPSANPQLSYGLRITLDGRESAGTVVLHAGKA FT YVFHDGATHILDLYDALAHAQDDAEGHGGGLTAPMPGKIISIAVAVGDKVEKGQALLVM FT EAMKMEHTITAPAAGEVAGLFYAVGDQVGEGAALIEVK" FT misc_feature 453286..454404 FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain" FT misc_feature 453733..453777 FT /note="ScanRegExp hit to PS00866, Carbamoyl-phosphate FT synthase subdomain signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 454132..454155 FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT misc_feature 455089..455292 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme" FT misc_feature 455161..455214 FT /note="ScanRegExp hit to PS00188, Biotin-requiring enzymes FT attachment site." FT CDS complement(455327..455572) FT /transl_table=11 FT /locus_tag="BP0450" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3012 TR:Q9HZJ4 (EMBL:AE004726) (124 aa) fasta FT scores: E(): 9.3e-07, 42.667% id in 75 aa, and to FT Clostridium acetobutylicum hypothetical protein Cac1208 FT TR:Q97JR5 (EMBL:AE007634) (173 aa) fasta scores: E(): 0.75, FT 33.333% id in 57 aa" FT /protein_id="CAE44780.1" FT /translation="MAMQDFRPGVYRHYKGDHYLALGLARADETDEVVVVYTRLYARAG FT LPMSTRLLRIWNETVDTGAGPQPRFAYVGHVTPEQG" FT CDS complement(455586..456776) FT /transl_table=11 FT /gene="argM" FT /gene_synonym="astC" FT /gene_synonym="cstC" FT /locus_tag="BP0451" FT /product="succinylornithine transaminase" FT /EC_number="2.6.1.-" FT /note="Similar to Escherichia coli succinylornithine FT transaminase ArgM or AstC or CstC or B1748 SW:ARGM_ECOLI FT (P77581) (406 aa) fasta scores: E(): 1.9e-57, 44.503% id in FT 382 aa, and to Pseudomonas aeruginosa probable class III FT pyridoxal phosphate-dependent aminotransferase Pa0530 FT TR:Q9I606 (EMBL:AE004489) (393 aa) fasta scores: E(): FT 2e-65, 48.438% id in 384 aa" FT /protein_id="CAE44781.1" FT /translation="MEFSQFKVNALMEITARPDLVFVRGQGSWLEDHAGKRYLDFVQGW FT AVNTLGHCAPEMKRAMAEQADKLMNPSPAFYNLPSIELAQRLTSASCFDRVFFANSGAE FT ANEGAIKLARKWGRVNRNGAYKIITMNHGFHGRTLATMSASGKPGWDTMFAPQVEGFPK FT AEINDLDSVRALIDAQTVAVMLEPVQGEAGVIPATREFMQGLRKLADEHGILFIVDEVQ FT TGMGRTGSLFAYQQFDVIPDIMTLAKGIGGGIPLAALLAREEVCVFAHGDQGGTYNGNP FT LCAAVGVAVFDTITAPGFMEAAQARTRQLSEGLLALSAKWSLRGERGMGLLRALVLDRD FT DAPAIVEAARMLAPEGLLLNAPRGNLLRFMPALNVTEADMARMLEQLDGVIAAVRK" FT misc_feature complement(455658..456698) FT /note="HMMPfam hit to PF00202, Aminotransferase class-III" FT misc_feature complement(456018..456131) FT /note="ScanRegExp hit to PS00600, Aminotransferases FT class-III pyridoxal-phosphate attachment site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 456972..457937 FT /transl_table=11 FT /locus_tag="BP0452" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 1.9e-42, 41.956% id in 317 aa, and to FT Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 FT (EMBL:AE008213) (329 aa) fasta scores: E(): 3.3e-40, FT 41.009% id in 317 aa" FT /protein_id="CAE44782.1" FT /translation="MNRVFAGLCAGLALAAASFAAHADYPERPIRMLVPFPPGQATDIF FT ARALAEKLGADLKQPIVVENRAGAGSNIGMGEAARATPDGYTLVVAGSAAAVNQTLYKN FT INYSLTKDFAPVSGVFSVPLVFLATPASGIDSLQKLVTQARAHPGELAYASAGIGGTQH FT LSAEMFKAAADIDIRHIPYKGSGPAQADFLGHQVPLMVDSVTAGLPHIKTGKAVPLAVT FT TAGRLAQLPDVPTVAESGYPGFEAIGWAAVLAPAGTPPAVTELLSRHIGQALGSAELAR FT FLRERGAEPMPTTPQATGQFIAAEVQKWGDAVRRSGAQVD" FT misc_feature 456972..457040 FT /note="Signal peptide predicted for BP0452 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.990 between residues 23 and 24" FT misc_feature 456981..457040 FT /note="1 probable transmembrane helix predicted for BP0452 FT by TMHMM2.0 at aa 25-44" FT CDS complement(457960..459099) FT /transl_table=11 FT /locus_tag="BP0453" FT /product="low-specificity D-threonine aldolase" FT /note="Similar to Arthrobacter sp metal-activated pyridoxal FT enzyme TR:O82872 (EMBL:AB010956) (379 aa) fasta scores: FT E(): 8.3e-99, 71.698% id in 371 aa, and to Alcaligenes FT xylosoxydans xylosoxydans low-specificity D-threonine FT aldolase TR:Q9RBG6 (EMBL:AB026892) (377 aa) fasta scores: FT E(): 8.3e-44, 45.195% id in 385 aa" FT /protein_id="CAE44783.1" FT /translation="MNASVAPILPPAARAGQALCDVDTPSLALDLAAFERNLRVMQDWA FT ERLGVALRPHAKAHKCPEVALRQLALGARGICCQKVSEALPFVAAGVRDIHISNEVVGP FT VKLALLGELARQADISVCVDHPDNLEALAQAMERAGARVTVLVEVDVGQGRCGVTDPQV FT VLALALARRADAAAGLRFGGLQAYHGSVQHMRTQADRAAVCAEVARAAAAHADALRAAG FT LACPTITGSGTGSAQFDAASGVFTELQAGSYPFMDADYGDNEWAETLRFEPSLYVLSTV FT MSTPAAGRVVLDAGLKSSTAECGPPRVAGRAGLTYLAANDEHGVARVEPGAPAPALGKM FT VRLVPSHVDPTFNLHDSLVVFRDDVVVDLWPIAARGLSR" FT CDS 459311..460273 FT /transl_table=11 FT /locus_tag="BP0454" FT /product="putative exported protein" FT /note="Similar to Brucella abortus 31 kDa immunogenic FT protein precursor Bcsp31 SW:BCSP_BRUAB (P12920) (329 aa) FT fasta scores: E(): 1.8e-68, 61.329% id in 331 aa, and to FT Archaeoglobus fulgidus immunogenic protein Af0635 TR:O29620 FT (EMBL:AE001060) (330 aa) fasta scores: E(): 1.7e-37, FT 45.098% id in 306 aa" FT /protein_id="CAE44784.1" FT /translation="MSMKSWIKTLTLALAVAGAATSANAQQFFRIGTGGTAGTYYPVGG FT MIANSISQPGKLIATAVASNGSVANINGILGGSLEAGFTQSDVAYWAYSGTGTFDGKPK FT AQDLRLIATLYPESIHLVARKGSGIKTVADLRGKRVSMDEPGSGTLVDVRLILGAFGMT FT DKDIKAEYLKPNQAGDKLKDGGLDAFFFVSGAPAGAISELASSGAGIELVPIVGPEIDK FT LRSQQEFFTPDTIAANTYQNVGEVKTISINAQLVTSAKLPEQTVYDIVKALYSDATRKT FT LDNGHAKGKLITKENAVKGAGIPFHAGAEKYYKEVGLLK" FT misc_feature 459311..459385 FT /note="Signal peptide predicted for BP0454 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 25 and 26" FT CDS 460397..462421 FT /transl_table=11 FT /locus_tag="BP0455" FT /product="putative membrane protein" FT /note="Similar to Bacillus halodurans Bh2945 protein Bh2945 FT TR:Q9K8Q8 (EMBL:AP001517) (656 aa) fasta scores: E(): FT 1.6e-57, 41.705% id in 657 aa, and to Pasteurella multocida FT hypothetical protein Pm1580 TR:Q9CKN1 (EMBL:AE006195) (660 FT aa) fasta scores: E(): 1.5e-56, 37.065% id in 661 aa" FT /protein_id="CAE44785.1" FT /translation="MQIDHDKTQQLTEKYDSEIRFRPLDKTATWIVSILLVTLSIFHYY FT TAGFGLLREATHRGVHLAFVLSLIFLVFGFSKAHYQREPKSTLLCPGGVPLYDWAIAIV FT LALSVLYIPYIFEDLAFRVGNPLPMDVAMGTILIVGLLEGTRRAMGWPLPIIAMVFLAY FT AAFGPYFPGLLQHAGNNWPQIVNHMYLTSQGIYGVAVGVVATYVFHFVLFGVLATRIGL FT GQLFLDVASTIAGRYAGGPAKVSVFGSAMFGMLSGSSVANAVTVGSLTIPAMIRIGYPR FT HFAAGVEAASSTGGQITPPIMGAAAFLMIEFLGIPYQQIAIAGIFPAFLYFFGMFMQVH FT FEAKREGLRGLTEEEMPTLKASFKKRWPTLLPLIMLIGVLASGRTPYLAAFAGITGCIV FT VGLLNPMQRLRLRDLYEAFETGAKYALAVGAAAGTVGLVIGVVTLTGVGFKISYIVISA FT AQAIAGGVGTIIPDVVANTQTLTLIAALVMTGIVCILMGCGIPTTANYIIMVAVAAPTL FT VQLGVQPIAAHFFVFYFGILADITPPVALAAYAAAGMAGSDPFKTGNTAFRLGITKLIV FT PFVFVFSPSLLISVQGFTWYDFFTTLVGCMVGLVLLSAAFSRYMLVEMKSWERWVCVVG FT ALLTILPGLTSGLVGLAICIPVFLRQLAQLKLENGAKAA" FT misc_feature join(460484..460552,460571..460624,460682..460744, FT 460763..460822,460850..460918,460979..461047, FT 461339..461407,461555..461623,461666..461734, FT 461753..461821,461831..461890,461909..461977, FT 461987..462055,462092..462160,462188..462247, FT 462284..462352) FT /note="16 probable transmembrane helices predicted for FT BP0455 by TMHMM2.0 at aa 30-52, 59-76, 96-116, 123-142, FT 152-174, 195-217, 315-337, 387-409, 424-446, 453-475, FT 479-498, 505-527, 531-553, 566-588, 598-617 and 630-652" FT CDS 462618..464861 FT /transl_table=11 FT /gene="hemC" FT /locus_tag="BP0456" FT /product="putative heme receptor" FT /note="Similar to Haemophilus ducreyi TonB-dependent heme FT receptor A precursor TdhA TR:O87381 (EMBL:AF052977) (739 FT aa) fasta scores: E(): 1.4e-134, 48.743% id in 716 aa, and FT to Haemophilus influenzae heme/hemopexin utilization FT protein C precursor HxuC or Hi0113 SW:HXC1_HAEIN (P44523) FT (744 aa) fasta scores: E(): 2.8e-139, 48.299% id in 735 aa" FT /protein_id="CAE44786.1" FT /translation="MSSPRPPAPWRAPLALAGLSLGCAAGAYGAPAPAQTVVTLPAQEV FT IGDSVAAARSVLRLPEIERAQADNFASLVDQLPGISMAGSPRPGGQSLNIWGMGDTEDV FT KIVLDGAPKGFEKYRQGSVFIEPELIRRIEVDKGPHNLVDGNGGFGGTVKIDTKDAADL FT LPPGARFGALAKYGRHSNDGQDIYSVALYGRTRADGADGLLYANRRDGGDLRRPDGTRF FT AYSRNNQRSLLAKVNLYPDDAQTITLSAMRSNAAGWQPFAAKRDDLPAPSQADIDRYGL FT TEAWRRKLVHRDQLDQNYSAKWNIAPSAHPWVNLTLAYARSDTRQRDRRSSRASQSAFL FT GTLGNKSWVDYRDDRFDLSNESHVALGTAEHVLLAGLRWHRHRRDTLMYYPPGRGEPDY FT NHGYFQPHYMPSGTQTVRSLYLQDAVTVGGLTVTPGVRYDHVANTGRPNDAPRYNNPAP FT VAGHDYRRVSYAGWTPHLGVVWKAARGVALFADAGRTWRAPVIDEQYEVQYAKSNVSGS FT SRALRPERIVGLRAGAVLDYNDIATRGDSVQIRTTLFRNRGKHEIFQRRGVACRGQAEG FT GAASDCPKPLSNYRNLPGYTIEGLELETYYDSPAMFASLSLSAMRGHRDASPRDPWGPR FT TWIAEIPPVSARAMLGVKLPRLDMVLGWRGEFVRRQDRSPTDGDPLAGYWALPKTAGYA FT LHGLFASWQPRHVKGLDVRLAADNLFNRPYHPYLGEAVSGTGRNIKLSIAQRF" FT misc_feature 462618..462704 FT /note="Signal peptide predicted for BP0456 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.901 between residues 29 and 30" FT misc_feature 462654..462686 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 462759..462806 FT /note="ScanRegExp hit to PS00589, PTS HPR component serine FT phosphorylation site signature." FT misc_feature 464523..464858 FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT misc_feature 464718..464783 FT /note="ScanRegExp hit to PS00392, DDC / GAD / HDC / TyrDC FT pyridoxal-phosphate attachment site." FT misc_feature 464805..464858 FT /note="ScanRegExp hit to PS01156, TonB-dependent receptor FT proteins signature 2." FT CDS 465140..465598 FT /transl_table=11 FT /locus_tag="BP0457" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli protein Smg or B3284 FT SW:SMG_ECOLI (P30853) (157 aa) fasta scores: E(): 3.5e-12, FT 40.506% id in 158 aa, and to Vibrio cholerae Smg protein FT Vc0049 TR:Q9KVU0 (EMBL:AE004096) (158 aa) fasta scores: FT E(): 4.1e-12, 39.490% id in 157 aa" FT /protein_id="CAE44787.1" FT /translation="MFDILVYLFENYYTPQACPAADVLAKRLAAAGFEHEDIDDALGWL FT YGLAETTERCVELAHAPATGIRIYTDAEYQQLGTESIGFITFLESAGVLPAPLREIVID FT RALASPETPISLSKIKIIALMVLWSQEAEIDNLVLEELLDDEGSRRLH" FT CDS join(465615..466043,466036..466539) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0458" FT /product="probable aminoacyl-tRNA synthetase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 143. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa probable aminoacyl-transfer RNA synthetase FT Pa4724 or GltX TR:Q9HV75 (EMBL:AE004886) (293 aa) fasta FT scores: E(): 2e-41, 47.138% id in 297 aa, and to Vibrio FT cholerae glutamyl-tRNA synthetase-related protein Vc0595 FT TR:Q9KUC7 (EMBL:AE004144) (304 aa) fasta scores: E(): FT 7.6e-40, 44.966% id in 298 aa" FT /db_xref="PSEUDO:CAE44788.1" FT misc_feature 465681..465968 FT /note="HMMPfam hit to PF00749, tRNA synthetases class I (E FT and Q)" FT variation 466044 FT /note="35 bp deletion in pertussis relative to FT parapertussis and bronchiseptica" FT misc_feature 466132..466359 FT /note="HMMPfam hit to PF00749, tRNA synthetases class I (E FT and Q)" FT CDS complement(466526..469147) FT /transl_table=11 FT /locus_tag="BP0459" FT /product="putative membrane protein" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm0986 TR:Q9CM56 (EMBL:AE006137) (824 aa) fasta FT scores: E(): 4e-10, 26.310% id in 897 aa" FT /protein_id="CAE44789.1" FT /translation="MQVDTHQQAGSELYAWRQFLGRATLWLGVVLLGSAVVCWVAANWP FT AMTKIQRFAGAQGLLALSAVIAAWVAWRLREATGVRRHGVGALLVLAGLFLGALLALLG FT QTYQTGADTWELFAWWALLLLPWALAGASQALWLLWALILNVAVALWLGERLLSWWWSL FT SGAGFPALVLAALNLAMLACWEWVAHHRHVSTRVGPRVLALLAQGVLVAALLFDFGALA FT DLASATGIAWIATTLGMGFYYQQVRRDLVILALLAAAMICVSLRVVGAWLLELEPGVWA FT ALPLAGLLMAEAVWAVRWLRRLGEQSTRAAVDAEPAGASAGNGLDPAEAGAPVLELAPE FT DARGAAETPWYVHGLLGLSAWLATWLLLLFVAASGIVASKEGALVAGLGLCIVAVAVLR FT TDSGPFWRQCATAMGFAGQILVMVGLWDSASFASACFFILALGAVVYALTPDLLLRFLS FT GWMIALAGAGLIWRGLTPGMGDKQLLGLLLEFDALRAAFVWLPVAVVGAWGAAVAFSLG FT HRWSRIRPQQLDPLGWALALAAQSMVWLAGGVTAMQLRALWALHPSTAVLTVAGVLLPV FT AVALSVLWPRRRQLTAGMLWGVPLALLVLALFWLPSPGVAFALAWLLLGFGLHKPRLTM FT LGVISLLAYLMIYYYQLQIPLLDKALWLAGGALLLFLGRLLVWLVPQWMRTAAPATRAP FT MGPPSRSLRWRVALVLAGLAVTLAVVNGNIWQREALLAKGRVAILELAPVDPRSLMQGD FT YMALRFAAGEDIERWRNDRPADGQDAAAFAHIDGYVVLAPDERGVARPVRIQEQAAPRD FT GNEIVLRYRLRASGVRLVTNAYFFPEGEQQRYQRARYGEMRVDDRGTGLLVRMLGEDLN FT PL" FT misc_feature complement(join(466973..467038,467099..467164, FT 467192..467248,467294..467359,467396..467461, FT 467492..467557,467597..467662,467723..467779, FT 467801..467857,467870..467935,467951..468001, FT 468032..468097,468251..468316,468332..468397, FT 468419..468475,468488..468544,468584..468649, FT 468689..468739,468755..468799,468830..468895, FT 468932..468988,469019..469084)) FT /note="22 probable transmembrane helices predicted for FT BP0459 by TMHMM2.0 at aa 21-43, 53-72, 84-106, 116-131, FT 136-153, 166-188, 201-220, 224-243, 250-272, 277-299, FT 350-372, 382-399, 404-426, 430-449, 456-475, 495-517, FT 530-552, 562-584, 596-618, 633-652, 661-683 and 703-725" FT CDS 469211..471838 FT /transl_table=11 FT /gene="topB" FT /locus_tag="BP0460" FT /product="DNA topoisomerase iii" FT /EC_number="5.99.1.2" FT /note="Similar to Escherichia coli DNA topoisomerase III FT TopB or B1763 SW:TOP3_ECOLI (P14294) (653 aa) fasta scores: FT E(): 5.8e-37, 33.866% id in 626 aa, and to Haemophilus FT influenzae DNA topoisomerase III TopB or Hi0444 FT SW:TOP3_HAEIN (P43704) (651 aa) fasta scores: E(): 6.3e-51, FT 33.703% id in 632 aa" FT /protein_id="CAE44790.1" FT /translation="MNKTLIIAEKPSVALDISRALGGFAREGDYFESDRYVLASSIGHL FT LSLVAPNDPVKGKWSFTHLPVIPPAFELGPTDKKSAERLKLLVRLAKRKDVDAIINACD FT AGREGELIFRYIVQFAGVKKPIQRLWLQSMTQQAIRDAFANLRDDEQLKPLEAAARSRA FT EADWLVGINGTRAMTAFNSKDGGFFKTPVGRVQTPTLAIVNERENRIRSFVSRDYWEVH FT ATFVAAAGLYEGRWIDPAFRKDERDPEKRESRLWSLAAAQSVVAACRAQSGSVTEESKP FT STQMSPALYDLTSLQREANGRFGFSAKTTLALAQTLYERHKALTYPRTDSRYLPEDYIN FT TVRQTMQVLAQGDSNAVGALSRHADTVLAQNWVKPNRRIFDNKKVSDHFAIIPTLQVPR FT DLSEAEGKLYDLVLKRFLAVFFPAAEYRVTTRLTEVQGHRFKTEGKVLVTPGWLAVYGK FT EAQGEDANLVPVADGETVRAEDVEAVGLATKPPARYNEATLLSAMEGAGKLVDDEELRE FT AMSERGLGTPATRAAIIEGLLNEAYLRRDGRDLVPTAKARQLMALLSGLDVSELTSPEL FT TGEWEHKLKQIEQGALDRAAFMREIAQMTQVIVKRAKEYERDTVPGDYATLQTPCPKCG FT GVVKENYRRFACTQCDFSIGKHPGGRTFELPEVEELLAKREIGPLQGCISKMGRPFAAI FT LRISGEYKLEFDFGQNDEEDNEAVDFSGHTPVGACPKCSARVFEHGMSYVCEKLVGLQK FT SCDFRSGKVILQQEISREQMEKLLTAGRTDLLDGFVSSRTNRKFKAFLVRQPDGKVGFE FT FEPRGDKPGRPGAAAKKAAGKTATKTAAKAPAKTAAKKAVKKAAPKKAATKTAAKKAAK FT KSAA" FT misc_feature 469217..469606 FT /note="HMMPfam hit to PF01751, Toprim domain" FT misc_feature 469682..470908 FT /note="HMMPfam hit to PF01131, DNA topoisomerase" FT misc_feature 470153..470200 FT /note="ScanRegExp hit to PS00396, Prokaryotic DNA FT topoisomerase I active site." FT misc_feature 471689..471712 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 471990..473054 FT /transl_table=11 FT /locus_tag="BP0461" FT /product="putative exported protein" FT /note="Similar to Rhizobium loti ABC transporter, FT substrate-binding protein Mlr7949 TR:Q984L7 (EMBL:AP003013) FT (337 aa) fasta scores: E(): 2.5e-08, 25.085% id in 295 aa, FT and to Agrobacterium tumefaciens Agr_l_1197p TR:AAK89177 FT (EMBL:AE008258) (333 aa) fasta scores: E(): 2.6e-07, FT 25.267% id in 281 aa" FT /protein_id="CAE44791.1" FT /translation="MTALRSPRGATRRRFLAGSGALMAVGLAGSRLSWAQPALGRVAYG FT QGSIDPFFAAGYVALKQGYFAADELEVEYLNSQSGPRTNQLLAAGQIVFGATAATAAPA FT LTLAGKPAALVFGFDRKLTYANIIVRRADYESGKIRTLADLAGKRVGATQPQSSTWLMA FT LYLMQKAGVADKVDIRPLGDLATMLGALKTGSVSASMATLSMMEQAVQEGWGMPIFDAT FT TEASWQEFMGGDVPGIAALTLQDTIQKRPEVVQAFVGALVKAQDFISANSAAAVTDLIY FT DDYLNAYARPAIEKTIGLYQQTVFLRDNIITEDAYARMTAIMGDGRQFSNEELKKVPYS FT ACVDMRFVRKARGL" FT CDS 473051..473824 FT /transl_table=11 FT /locus_tag="BP0462" FT /product="ABC-transporter, ATP-binding component" FT /note="Similar to Streptomyces coelicolor putative FT ABC-transport protein, ATP-binding component Sc8g12.21 FT TR:Q9KYY4 (EMBL:AL355753) (270 aa) fasta scores: E(): FT 3.4e-32, 45.312% id in 256 aa, and to Agrobacterium FT tumefaciens Agr_l_1200p agr_l_1200 TR:AAK89178 FT (EMBL:AE008258) (273 aa) fasta scores: E(): 2.9e-34, FT 48.261% id in 230 aa" FT /protein_id="CAE44792.1" FT /translation="MMIELEHVGKVYQARNATVHAVGEVSLRIDDGEFVAIVGPSGCGK FT STLLNMIAGFLPPTTGTVRVAGAPVAGQVPPALGYIFQKDTLLPWFNVRKNVALGLRFQ FT GVDSARIARRVDELLELGHLSGFANAYPHQLSGGMRRRVALLMSLAVEPRILLLDEPFG FT ALDTHTKTHLHRELGEIWRKLGQTIVMVTHDLDEAITLADRVVVLSGPPSRVLLDERIA FT IAHPRDVFTLRDTPQFTAHMRSLWAVLGQQFRNAA" FT misc_feature 473144..473683 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 473165..473188 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 473453..473497 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 473833..474666 FT /transl_table=11 FT /locus_tag="BP0463" FT /product="ABC transporter, permease component" FT /note="Similar to Escherichia coli taurine transport system FT permease protein TauC or SsiC or B0367 SW:TAUC_ECOLI FT (Q47539) (275 aa) fasta scores: E(): 7.1e-16, 28.195% id in FT 266 aa, and to Rhizobium loti ABC transporter, permease FT Mlr7951 TR:Q984L5 (EMBL:AP003013) (292 aa) fasta scores: FT E(): 8.7e-36, 37.681% id in 276 aa" FT /protein_id="CAE44793.1" FT /translation="MSSDSPLPDALRDGVRRRLRVTAWQLLILALILGAWEGLTRVPWF FT VQNTIFDPFFISQPSRVAQRLWQWMQPGPQSVWPHLWLTLQATLLGLAVGVGSGFVVGL FT ALSRSRMLADVFNPFIVAFNSMPRIAFVPLITMFFELGMASKVVTSWFVVFFLVFFNTY FT KGGRSVERELVDFCRTLGGSPRQILWRVRIPTAAAWTFAALPNAISFALIGVVLAEFVG FT STTGMGYLMITALATLNATDMFAAVTLLSVVGIVLVYCVTWLERRLLHWAPEFRD" FT misc_feature join(473893..473952,474070..474138,474175..474243, FT 474253..474321,474427..474495,474553..474621) FT /note="6 probable transmembrane helices predicted for FT BP0463 by TMHMM2.0 at aa 21-40, 80-102, 115-137, 141-163, FT 199-221 and 241-263" FT misc_feature 474325..474558 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS 474679..475458 FT /transl_table=11 FT /gene="idnO" FT /locus_tag="BP0464" FT /product="gluconate 5-dehydrogenase" FT /EC_number="1.1.1.69" FT /note="Similar to Escherichia coli gluconate FT 5-dehydrogenase IdnO or B4266 SW:IDNO_ECOLI (P39345) (254 FT aa) fasta scores: E(): 1.8e-29, 40.000% id in 250 aa, and FT to Agrobacterium tumefaciens Agr_c_4386p TR:AAK88153 FT (EMBL:AE008155) (256 aa) fasta scores: E(): 1e-45, 54.545% FT id in 253 aa" FT /protein_id="CAE44794.1" FT /translation="MISLPYLQRFALSGQVALVTGSARGLGLRIAQALAGSGAHVLING FT RDAHAVEAAVSDLRQQGLRASAQPFDVSDEQAMEQAFARIDAEHGRLDILVNNVGARNR FT KPLAETSPAEIRAMMDTNLIAGILLARLAAQRMMRQRYGRLIAITSVAGELARANDAVY FT PAAKQGLTGMMRALAVEFGGHGITSNAIAPGAFATETNAAIANDPQAGAAMAARNPTGR FT WGDPEEIAGAAVFLASPAASYVNGHVLVVDGGLSVQF" FT misc_feature 474721..475275 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 475126..475212 FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT misc_feature 475339..475431 FT /note="HMMPfam hit to PF00678," FT CDS 475532..476965 FT /transl_table=11 FT /locus_tag="BP0465" FT /product="probable aldehyde dehydrogenase" FT /note="Similar to Ustilago maydis indole-3-acetaldehyde FT dehydrogenase Iad1 TR:Q92460 (EMBL:U74468) (497 aa) fasta FT scores: E(): 1.2e-68, 42.827% id in 474 aa, and to Bacillus FT halodurans NADP-dependent aldehyde dehydrogenase DhaS or FT Bh0539 TR:Q9KFE2 (EMBL:AP001508) (498 aa) fasta scores: FT E(): 1.3e-69, 41.788% id in 481 aa" FT /protein_id="CAE44795.1" FT /translation="MKQHFIDNASVPGSSGERIPVIDPSTGQEFDSIARGNAADIDLAV FT QAARRAYEGAWGRLSAAERGRLMLALSLKVLEHRDELTALESRDCGKPLKQARADVIAI FT ARYFEYYGGAADKLHGETIPYQQGYTVLTLREPHGVTGHVVPWNYPLQIFGRSVGAALA FT AGNACVVKPAEDACLSLLRVAELAAETGFPAGALNIVTGYGHEAGDALTRHPGIDHISF FT TGSPRVGVLVTQTAAERHVPVTLELGGKSPQIVFADADLDALVPVAVNAIVQNAGQTCS FT AGSRLLVERGAYERVLERLGAAFAALRAGPAQSDLDCGPLIRKTQQERVRGFLDLARGD FT GIATVAQGRIVPEAPAEGYYQAPTLLRDVPVDHPLAQEEVFGPVLAAIPFDDEADAVRI FT ANATEYGLAASVWTRDGGRQLRIARKVRSGQVFINNYGAGGGIELPFGGVKASGHGREK FT GFEALYGFTVLKTISIKHD" FT misc_feature 475556..476959 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature 476264..476287 FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 476348..476383 FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT CDS 476993..477751 FT /transl_table=11 FT /locus_tag="BP0466" FT /product="alcohol dehydrogenase" FT /note="Similar to Escherichia coli 7-alpha-hydroxysteroid FT dehydrogenase HdhA or HsdH or B1619 or Z2624 or Ecs2327 FT SW:HDHA_ECOLI (P25529) (255 aa) fasta scores: E(): 7.5e-24, FT 37.751% id in 249 aa, and to Pseudomonas paucimobilis FT 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX FT SW:LINX_PSEPA (P50198) (250 aa) fasta scores: E(): 9.2e-27, FT 40.873% id in 252 aa" FT /protein_id="CAE44796.1" FT /translation="MRLNGKTAIVTGAGSGFGEGIAAAFAREGAKVAVADINEAGGQRV FT AAAINAAGGQAVFVRADVSDNAAVANLLAATLKAFDGLDIVVNNAGTTHRNRPMLEVEE FT DEFDRIYAINVKSIYLTAKHMVPYFRAHGGGSFINIASTAAIRPRPGLTWYNGSKGAVV FT TTSKSMAAELGPDNIRVNCVNPVIGATGLLADFMGVPDTPENRKRFLATIPLGRFSTPQ FT DIANACLYLASDETAFITGACLEVDGGRCV" FT misc_feature 476993..477070 FT /note="Signal peptide predicted for BP0466 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.899) with cleavage site FT probability 0.812 between residues 26 and 27" FT misc_feature 477008..477565 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 477464..477511 FT /note="ScanRegExp hit to PS00038, Myc-type, FT 'helix-loop-helix' dimerization domain signature." FT misc_feature 477638..477730 FT /note="HMMPfam hit to PF00678," FT CDS complement(477807..479657) FT /transl_table=11 FT /locus_tag="BP0467" FT /product="acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Saccharomyces cerevisiae acetolactate FT synthase, mitochondrial precursor Ilv2 or Smr1 or Ymr108w FT or Ym9718.07 SW:ILVB_YEAST (P07342) (687 aa) fasta scores: FT E(): 1.7e-87, 42.710% id in 583 aa, and to Rhizobium FT meliloti probable acetolactate synthase isozyme III large FT subunit protein TR:CAC46693 (EMBL:AL591789) (592 aa) fasta FT scores: E(): 1.3e-81, 52.860% id in 577 aa. Also similar to FT BP0789 (50.000% identity in 580 aa overlap)" FT /protein_id="CAE44797.1" FT /translation="MVSMNDRLHTSTLSALQQVEHAAAVNGAKILLHTLIERGVDTVFG FT YPGGAVLPLYDALYAEPRLRHVLVRHEQAAVHAAEGYARTTGRPGVVFVTSGPGMANTT FT SGLLDAMCDSVPVLCISGQVSTAAIGTDAFQECDAIGISRSVTKWNTQIRAVQDVAEVV FT GRAFDLTRQGRPGPVLVDFPKDIQLASPADAPQGEADPARRQLAALRARRQGGKAATRV FT PQGAVRRAAALLAQARRPVFYGGGGLVNSGPQACAAFTELVRQSGAPCTLTLMGLGAFP FT ASDPQFVGMLGMHGTLEANLAMHNADLVVCIGVRFDDRITGKLSEFCPHARKIHIDIDP FT ASINKVVRVDVALVGDCLPLVQALRDELAASPLPAQRLGPWWQRIDTWRARDCLAYTPA FT ADEILPQHLMHRLGAALDGRDAIVSTDVGQHQMWAAQYLRFDRPNRWLTSGGAGTMGYG FT VPAAIGAQIAHPGKTVVCVSGDASVLMNIQELSTAMQHDVPVKIVLCNNGYMGMVRQWQ FT ELIHGGRYSHSYNASLPDFVALARAFGWGAARVERPQDLDAALAACLEHPGPYFLDVAV FT AEQENCFPMMPAGHGHHRMMLADGQWYEEPPLPESPSPQA" FT misc_feature complement(477936..479555) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT misc_feature complement(478212..478271) FT /note="ScanRegExp hit to PS00187, Thiamine pyrophosphate FT enzymes signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 479751..480227 FT /transl_table=11 FT /locus_tag="BP0468" FT /product="AsnC-family transcriptional regulator" FT /note="Similar to Pseudomonas putida bkd operon FT transcriptional regulator BkdR SW:BKDR_PSEPU (P42179) (161 FT aa) fasta scores: E(): 1.3e-19, 39.073% id in 151 aa, and FT to Pseudomonas aeruginosa probable transcriptional FT regulator Pa4508 TR:Q9HVR3 (EMBL:AE004864) (157 aa) fasta FT scores: E(): 1.4e-20, 42.105% id in 152 aa. Also similar to FT BP2981 (41.333% identity in 150 aa overlap), and to BP1122 FT (42.667% identity in 150 aa overlap)" FT /protein_id="CAE44798.1" FT /translation="MKLDKFDLAILKALQDNARASLNDIGAAVGLSSTPCWNRIKRMEG FT AGIIRGYTVDIDPASIGFTDTVIVHVTLESHSEETLYEFGRALAQIPEVLEAFLVSGDY FT DYYIRIAVRDTRDYERLLHERLYRIPGIRHSKSCFVLRSLKETRLPLTPPPEQA" FT misc_feature 479877..480140 FT /note="HMMPfam hit to PF01037, AsnC family" FT CDS complement(480244..481200) FT /transl_table=11 FT /locus_tag="BP0469" FT /product="putative membrane protein" FT /note="Similar to Escherichia coli O157:H7 hypothetical FT 36.8 kDa protein Ecs2127 TR:BAB35550 (EMBL:AP002557) (321 FT aa) fasta scores: E(): 2.3e-34, 38.170% id in 317 aa, and FT to Rhizobium loti Mll4386 protein TR:Q98E66 (EMBL:AP003004) FT (309 aa) fasta scores: E(): 8.8e-45, 45.724% id in 304 aa" FT /protein_id="CAE44799.1" FT /translation="MWLPKFRCSQIVMIVRPRPTAWGLLFILRGSVIPHIAAKVAVIVA FT LSCVVAWLHARQWFAPGHLNAVPFSLFGLALSVFLGFRNNVCYDRWWEARKQWAELSAQ FT CRSLARETAAVLSGAADAPRQARIVRRLIGFNHALVARLRGGDPLTAARPWLPDAESMA FT LAGHRNVPDAILRAVTGDLHEGGPQRRYGEVVYQGLQQRVLACAQVQAACERIKTTPTP FT FAYSLLLHRTAWLFCLLLPFGLVGTLGPLTPLAVAFVAYTFFGLDALGDELEEPFGLAE FT NDLPLAALARDLEIDLLEGLGAHPLPAPLLPRGYVLT" FT misc_feature complement(join(480433..480498,480961..481026, FT 481072..481137)) FT /note="3 probable transmembrane helices predicted for FT BP0469 by TMHMM2.0 at aa 21-43, 58-80 and 234-256" FT CDS 481262..481771 FT /transl_table=11 FT /locus_tag="BP0470" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1478 TR:Q9PDA1 (EMBL:AE003977) (139 aa) fasta scores: FT E(): 4.3e-20, 48.227% id in 141 aa, and to Homo sapiens FT similar to kiaa0304 gene product TR:AAH07353 FT (EMBL:BC007353) (175 aa) fasta scores: E(): 1.8e-14, FT 37.908% id in 153 aa" FT /protein_id="CAE44800.1" FT /translation="MRPMTEIIKPWHSVRRSRLHGNGVFATRKIPAGTRIIEYGGKRIS FT AEEADRRHPTNPDDPFHTFFFSLSSGRVIDGGDEGNDARWINHSCDPNCEAQEGRHGKR FT VYIVALRDIARGEELFYDYGLVLDGRITRKLKEGYRCLCGTTPCRGTMLALPEKKKTKA FT RSAEKA" FT misc_feature 481268..481651 FT /note="HMMPfam hit to PF00856, SET domain" FT CDS 482145..482837 FT /transl_table=11 FT /gene="ribB" FT /gene_synonym="htrP" FT /locus_tag="BP0471" FT /product="3,4-dihydroxy-2-butanone 4-phosphate synthase" FT /note="Similar to Escherichia coli 3,4-dihydroxy-2-butanone FT 4-phosphate synthase RibB or HtrP or B3041 or Z4399 or FT Ecs3929 SW:RIBB_ECOLI (P24199) (217 aa) fasta scores: E(): FT 1.3e-39, 57.843% id in 204 aa, and to Vibrio cholerae FT 3,4-dihydroxy-2-butanone 4-phosphate synthase Vca1060 FT TR:Q9KKP2 (EMBL:AE004431) (218 aa) fasta scores: E(): FT 3.9e-38, 57.214% id in 201 aa" FT /protein_id="CAE44801.1" FT /translation="MSNVVPTPVFPLFAQPFATRLERALQHLRIGRPVILMDDFDRENE FT ADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDSNRSRYSTAFTVSI FT EAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSV FT DLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARGATGA FT PAELAVAA" FT misc_feature 482205..482792 FT /note="HMMPfam hit to PF00926, 3,4-dihydroxy-2-butanone FT 4-phosphate synthase" FT misc_feature 482484..482513 FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT CDS complement(482851..483048) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0472" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Pseudomonas aeruginosa FT hypothetical protein Pa0144 TR:Q9I6Y8 (EMBL:AE004452) (208 FT aa) fasta scores: E(): 0.00032, 50.000% id in 54 aa" FT repeat_region 483044..483075 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 483044..484096 FT CDS 483146..484096 FT /transl_table=11 FT /locus_tag="BP0473" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44803.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 483404..483469 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 483527..484060 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(484065..484096) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 484213..485280 FT /transl_table=11 FT /locus_tag="BP0474" FT /product="choloylglycine hydrolase" FT /EC_number="3.5.1.24" FT /note="Similar to Clostridium perfringens choloylglycine FT hydrolase SW:CBH_CLOPE (P54965) (329 aa) fasta scores: E(): FT 1.7e-06, 25.959% id in 339 aa, and to Rhizobium loti FT Mlr8141 protein TR:Q983W5 (EMBL:AP003013) (350 aa) fasta FT scores: E(): 7.4e-110, 80.059% id in 341 aa" FT /protein_id="CAE44804.1" FT /translation="MIFRRSRPGTIGAVTLLCASLLAMPASSACTRFVYHGANDEVITA FT RSMDWKVDVGTNLWAFPRGMQRSGQAGPNSIQWTSKHGSVIASGYDISTTDGMNEAGLV FT ANVLWLAESSYPEYDGKTPGLTLAAWAQYVLDNFASVREAVDTLASEPFTVVTDNVPGE FT QRPATLHLSLSDASGDSAIIEYIDGKQVIHHNRAYQVMTNSPTFDKQLALNEYWKQIGG FT TVMLPGTNRASDRYARAYFYVNAIPKSEDPVEAIASVFSVIRNVSVPYGITTPDQPNIS FT STRWRTVADHKRKRYFFESALTPNIFWIDLGALDFSAESGKVMKLDLGPDQAHIYSGQA FT NAHFEQAAPFKFLGL" FT misc_feature 484270..484302 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 484300..485133 FT /note="HMMPfam hit to PF02275, Choloylglycine hydrolase" FT CDS complement(485356..488484) FT /transl_table=11 FT /gene="rne" FT /gene_synonym="ams" FT /gene_synonym="hmp1" FT /locus_tag="BP0475" FT /product="ribonuclease E" FT /EC_number="3.1.4.-" FT /note="Similar to Escherichia coli ribonuclease E Rne or FT Ams or Hmp1 or B1084 SW:RNE_ECOLI (P21513) (1061 aa) fasta FT scores: E(): 1.6e-93, 44.328% id in 1049 aa, and to FT Neisseria meningitidis ribonuclease E Nmb0196 TR:Q9K1F8 FT (EMBL:AE002377) (919 aa) fasta scores: E(): 5.8e-109, FT 50.558% id in 985 aa" FT /protein_id="CAE44805.1" FT /translation="MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGV FT ITRIEPGLEACFVNYGEDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVE FT KEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGM FT SIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFS FT PEIGEILIDTDEIADQATAFMSVVIPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTV FT QLPSGGAVVIDHTEALVAVDVNSARSTRGADIEETALRTNLEAAEEVARQLRLRDLGGL FT IVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSH FT ITCPRCNGTGVIRDAESSALHVLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADIT FT KMEARLKVNLVLIPNKHLETPHHHIERLRHDDPRLEETKTSFELAEAPATDLTWQPREH FT EIKARPEALVKGITPAQPAPVSTPAPAKAPAAAAAAQGGLGGWFKRLTSWLGGSAEPAK FT TETKSEDEKRGANRARRAHDGQNRRGERHGSDRNRHRRNEPRGEHAESGDARHHVRGGR FT RQEERGERGERGQKEARTEREQTQQQQAAGQPRQERPSTAETGEEGGRGRGRGRRGRGR FT GRREEGQTDTPMTEQENMVAALAETVATALPEKRQAAPAPAAAAAAALTVAEAASSNEQ FT APVTEDADGIDGIDANADAGAETGTDPERKRRRRRSRRGRRSQEDGSTVNAEGVEGADD FT EQADAPAGVADIETPAQPAEPETVAAPVAVSVAADEPAATIETAAAEPAAPQATEAPQA FT EPVVAAADTAPQAVQPVQAELTPVETPQAQAQPAEPAAAAPVETAPVETAPVETAPVET FT TPVEAPVKPAEQAAAPVEAEAPVAQPEKTPEPAAVRPAAAIVVPAQAAAPATGALHDVL FT DAAGLTWVETDPERHAQTQMRIAAAATPARLGRERKPVASVSNEPLVQVETRH" FT misc_feature complement(488131..488382) FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT CDS 489007..489957 FT /transl_table=11 FT /gene="rluC" FT /locus_tag="BP0477" FT /product="ribosomal large subunit pseudouridine synthase C" FT /EC_number="4.2.1.70" FT /note="Similar to Escherichia coli ribosomal large subunit FT pseudouridine synthase C RluC or B1086 SW:RLUC_ECOLI FT (P23851) (319 aa) fasta scores: E(): 5.8e-52, 50.000% id in FT 316 aa, and to Pasteurella multocida RluC or Pm0992 FT TR:Q9CM51 (EMBL:AE006138) (326 aa) fasta scores: E(): FT 1e-53, 50.157% id in 319 aa" FT /protein_id="CAE44806.1" FT /translation="MRKETSPGTTPPAVRMLAIGPEHDGQRIDNFLLRLCKGVPKSHIY FT KAIRGGEVRVNKGRISAEYRLVEGDVVRVPPLRLPDPGATRPVPGAEFPVVYEDDALLV FT IDKPAGVAVHGGSGVSFGVIEQLRAARPQARFLELVHRLDRETSGLLMLAKKRSALLAL FT HAMLREGKGDKHYLALVEGDWVNDRQHIRLALTKWTTQSGERRVRVDQAGQAAHTIVTL FT RKRFGGYSLVDAELRTGRTHQIRVHLASSGFPIVGDDKCGTDEIRAAFARRGFGRMFLH FT AHQLTLPHPLTGETLRLTADLPPACLKLLKQLETA" FT misc_feature 489307..489756 FT /note="HMMPfam hit to PF00849, RNA pseudouridylate FT synthase" FT misc_feature 489424..489468 FT /note="ScanRegExp hit to PS01129, Rlu family of FT pseudouridine synthase signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 489960..490631 FT /transl_table=11 FT /locus_tag="BP0478" FT /product="probable hydrolase" FT /note="Similar to Erwinia chrysanthemi indigoidine FT systhesis protein IdgB TR:Q9KHB5 (EMBL:AF265211) (230 aa) FT fasta scores: E(): 4.8e-18, 40.777% id in 206 aa, and to FT Pseudomonas aeruginosa probable hydrolase Pa2974 TR:Q9HZN0 FT (EMBL:AE004723) (230 aa) fasta scores: E(): 2.1e-26, FT 44.340% id in 212 aa" FT /protein_id="CAE44807.1" FT /translation="MGYSLVVFDWDGTLMDSTHSIVAAIQGACRDLDLPVPSASSASWV FT IGLSLESALRRAVPELTQAMVPRFLERYRTHYLLRDSELRLFEGVRELLADLASQDVRL FT AVATGKSRVGLNRALAATGLGPLFDATRTADETFSKPHPAMLQELMHELGHEADAVVMV FT GDTSHDLQMAANAGVHGLGVAYGAHTLAELEACAPQAVVDSVAVLREWLLARSPGRIES FT V" FT misc_feature 489966..490517 FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS 490788..491747 FT /transl_table=11 FT /locus_tag="BP0479" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smc01281 TR:CAC45962 (EMBL:AL591787) (313 aa) fasta FT scores: E(): 1.3e-65, 55.799% id in 319 aa, and to FT Agrobacterium tumefaciens Agr_c_3511p TR:AAK87679 FT (EMBL:AE008111) (346 aa) fasta scores: E(): 3.1e-67, FT 55.728% id in 323 aa" FT /protein_id="CAE44808.1" FT /translation="MLIRKPSDIPSSQITPETVWQGRRDWIARAGLAAAALGLPGWAQR FT AAFAQDAALPGAPNSRYAVVDKPTSFKDVTTYNNYYEFGLDKGDPAAHAGRLRTWPWEI FT AIEGEVGKPGVYAIDDLLKLAPMEERIYRLRCVEGWSMVIPWVGYSLSTLLQRVEPTGN FT AKYVEFVTAVQRDTMPGVRSSVLDWPYVEALRLDEALHPLTMLVFGVYGKVLPNQNGAP FT VRLAVPWKYGFKSAKSLVAIRLVEKQPVSSWMNAAPQEYGFYANVNPDVPHPRWSQATE FT RRIGEDGLFSPKRKTLMFNGYAEQVASLYQGLDLRANY" FT CDS 491797..492417 FT /transl_table=11 FT /locus_tag="BP0480" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical FT transmembrane protein Smc01282 TR:CAC45961 (EMBL:AL591787) FT (216 aa) fasta scores: E(): 1.1e-23, 41.429% id in 210 aa, FT and to Caulobacter crescentus hypothetical protein Cc2747 FT TR:Q9A4T3 (EMBL:AE005940) (253 aa) fasta scores: E(): FT 1.3e-23, 43.229% id in 192 aa" FT /protein_id="CAE44809.1" FT /translation="MPAAPLTARAIGRIKPLLFVAGLLPFARWFWLGANDGLSANPVEF FT LTRSSGTWTLVCLLVTLAITPLRRLTGQPALVRLRRMCGLFAFFYGSLHFLAWVWWDRG FT LDPVSMLQDVGERPFITVGFAAFVLMAALAATSTQWAMRKLGKRWQTLHRAVYAIGLLA FT ILHFWWHKAGKNDLQQPLLYGSVLALLLGWRVAAWWRRRGAAR" FT misc_feature join(491845..491898,491941..492009,492046..492099, FT 492142..492210,492247..492306,492334..492387) FT /note="6 probable transmembrane helices predicted for FT BP0480 by TMHMM2.0 at aa 31-48, 63-85, 98-115, 130-152, FT 165-184 and 194-211" FT CDS complement(492414..493364) FT /transl_table=11 FT /locus_tag="BP0481" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44810.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 492414..492445 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(492414..493466) FT misc_feature complement(492450..492983) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(493041..493106) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS complement(493457..494887) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0482" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Agrobacterium tumefaciens FT Agr_l_695p TR:AAK88921 (EMBL:AE008234) (577 aa) fasta FT scores: E(): 2e-74, 48.261% id in 460 aa" FT /db_xref="PSEUDO:CAE44811.1" FT CDS complement(494921..495766) FT /transl_table=11 FT /locus_tag="BP0483" FT /product="AraC-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative transcription FT regulator protein Smc03170 TR:CAC47480 (EMBL:AL591792) (279 FT aa) fasta scores: E(): 2.4e-11, 30.515% id in 272 aa, and FT to Bacillus halodurans Bh0401 protein TR:Q9KFS6 FT (EMBL:AP001508) (299 aa) fasta scores: E(): 4.2e-08, FT 27.119% id in 295 aa" FT /protein_id="CAE44812.1" FT /translation="MKPKTRLYYAERLEPVLAWLAARPDADADLHRLAELACLSPYYFH FT RVYRALLGETVHATVQRMRLARASVALAQGKGSLRQVADRAGYASEAAFSRAFSAQYGL FT PPGRYRAKRSSPFNPEELRMYPLTMEDFPGLSLAILAHQGDYQEIGNTFDRLALLAAIQ FT DLVRDGMQPPPRYIGVYYDDPAQVARDALRSRAGVSLPPGTAAPAPFEPLDIPAMRCAV FT LEYTGPYSEIEAPYNWLFSQWLPASGQEPGDFPMFEEYLNDPKTTPAAQLKTRIYLPLA FT " FT misc_feature complement(495428..495688) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family" FT misc_feature complement(495449..495583) FT /note="ScanRegExp hit to PS00041, Bacterial regulatory FT proteins, araC family signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(495854..497017) FT /transl_table=11 FT /gene="lldD" FT /gene_synonym="lctD" FT /locus_tag="BP0484" FT /product="L-lactate dehydrogenase" FT /EC_number="1.1.2.3" FT /note="Similar to Escherichia coli L-lactate dehydrogenase FT LldD or LctD or B3605 SW:LLDD_ECOLI (P33232) (396 aa) fasta FT scores: E(): 3.5e-63, 46.825% id in 378 aa, and to FT Pseudomonas aeruginosa L-lactate dehydrogenase LldA or FT Pa2382 TR:Q9I197 (EMBL:AE004664) (383 aa) fasta scores: FT E(): 2.1e-118, 78.068% id in 383 aa" FT /protein_id="CAE44813.1" FT /translation="MTQNLSTITCIEDLRVIAQKRVPRMFYDYADSGAWTESTYRANES FT DFQRIKLRQRVAVDMEGRSLRTTMAGSDAVMPVAIAPTGLTGMQHADGEILAARAAAEF FT GVPFTLSTMSICSIEDVAQGSGKPFWFQLYVMRDREFVGNLIDRAKAAGCSALVLTLDL FT QILGQRHKDIKNGLSAPPRPTLRNLIDLAFKPRWCLGMLGTRRRTFGNIVGHAKGVTDL FT SSLSSWTAEQFDPRLSWDDVEWIKRRWGGKLILKGILDAEDARLAAESGADALIVSNHG FT GRQLDGAVSSISALPAIAEAVGSRIEVWMDGGIRSGQDVLKAVALGARGTMIGRAFLYG FT LGAYGQAGVTRALGILYKEMDVTMALCGHKHINQIDRGILMPGTYPQ" FT misc_feature complement(495872..496966) FT /note="HMMPfam hit to PF01070, FMN-dependent dehydrogenase" FT misc_feature complement(496166..496186) FT /note="ScanRegExp hit to PS00557, FMN-dependent FT alpha-hydroxy acid dehydrogenases active site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS join(497172..497417,497411..497422) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0485" FT /product="probable acylphosphatase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 82. The sequence has been checked FT and believed to be correct. Similar to Pyrococcus abyssi FT acylphosphatase Pab7421 TR:Q9UY47 (EMBL:AJ248288) (91 aa) FT fasta scores: E(): 3e-10, 50.769% id in 65 aa, and to FT Aeropyrum pernix 104aa long hypothetical acylphosphatase FT Ape1591 TR:Q9YBK7 (EMBL:AP000062) (104 aa) fasta scores: FT E(): 1.5e-10, 53.521% id in 71 aa" FT /db_xref="PSEUDO:CAE44814.1" FT misc_feature order(497184..497417,497411..497412) FT /pseudo FT /note="This hit extended beyond the end of the feature by 0 FT aa and was clipped." FT /note="HMMPfam hit to PF00708, Acylphosphatase" FT misc_feature 497280..497330 FT /note="ScanRegExp hit to PS00151, Acylphosphatase signature FT 2. Confirmed by InterPro eMOTIF pattern match." FT variation 497415..497417 FT /note="~21 bp deletion in pertussis relative to FT parapertussis downstream of this codon." FT CDS complement(497436..498407) FT /transl_table=11 FT /locus_tag="BP0486" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 4.4e-38, 36.013% id in 311 aa, and to FT Comamonas testosteroni Orf4 protein TR:Q9S155 FT (EMBL:AB024335) (325 aa) fasta scores: E(): 3e-34, 32.923% FT id in 325 aa" FT /protein_id="CAE44815.1" FT /translation="MFKASLKALALCALAVLPMAAPAAQADWPAKPVTLVVPFPPGGST FT DVIGRYFGARLGELLGQSIVVENRPGANTGIGATAVARAPADSYTFMISGAPTYTTNSL FT LYANLNYDPIKSYEYVAIAASAPFVILTNPQTGIATVQDIVRKSASQPLSFGSFGTAST FT PHLAGEYLAQHGGAKLLHVPYRGSAPAMTDLIGNQIPLSIDTLVAALPQIRAGKVRAVA FT LTSSARSPLLPELPTVAESGVAPYDFQTWFGIVAPHGTPQAVVQRMAQALQTMLAEPGT FT QARMRELGFEPEYVDAAGFRARVEQEMARNAGVIKAAGIRIE" FT misc_feature complement(497856..497888) FT /note="ScanRegExp hit to PS00133, Zinc carboxypeptidases, FT zinc-binding region 2 signature." FT misc_feature complement(498330..498407) FT /note="Signal peptide predicted for BP0486 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.794 between residues 26 and 27" FT CDS complement(498446..499873) FT /transl_table=11 FT /locus_tag="BP0487" FT /product="probable amidase" FT /note="Similar to Pseudomonas aeruginosa probable amidase FT Pa4342 TR:Q9HW59 (EMBL:AE004850) (494 aa) fasta scores: FT E(): 3.5e-67, 45.436% id in 482 aa, and to Rhizobium loti FT amidotransferase, subunit A Mlr3187 TR:Q98GT2 FT (EMBL:AP003001) (472 aa) fasta scores: E(): 1.8e-58, FT 41.226% id in 473 aa" FT /protein_id="CAE44816.1" FT /translation="MGWESICAMTALQLRAELAAGHLSAREILQAHLEAIEHWNPTVNA FT IVTLDVEGARRRAAAADQAQARGEPLGLLHGLPVAHKDSFLTAGMRTTHGSPVFADFVP FT ERSSLVVTRQQAAGAITLGKTNLPEFGAGSQTFNAVFGPTRNPYDPAMTAGGSSGGAAA FT ALACRMVLLADGTDMGGSLRNPASFCNVVGLRPSPGRVPMWPTAAPYNTLSVAGPMART FT VADAALMLAALAGPDARDPLTIDADPGLFLGALERDFAGTRVAYAPDWGGLPVDPAVGR FT VLQAQLPRWEELGCRVDQACPDFGQADSSFHALRGLAFAINQGETVRRHRDRVKDTVIW FT NTELGLNQSGAVLAQAERDRAQLFERMHDFMQQYEFLIGPVSQVPPFSADQEYIQRIGD FT VEMRNYIDWMRSGYYLSLTGHPAISVPCGFTETGLPIGIQIVGRYRDERGVLQLAHAFE FT QLTQCWRQAPALRAPAA" FT misc_feature complement(498521..499795) FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature complement(499316..499411) FT /note="ScanRegExp hit to PS00571, Amidases signature." FT misc_feature complement(499499..499522) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 499948..500784 FT /transl_table=11 FT /locus_tag="BP0488" FT /product="transcriptional regulator" FT /note="Similar to Pseudomonas putida pca regulon regulatory FT protein PcaR SW:PCAR_PSEPU (Q52154) (291 aa) fasta scores: FT E(): 1.8e-22, 31.250% id in 272 aa, and to Rhizobium FT meliloti putative transcriptional regulator, Iclr family FT protein Smb20586 TR:CAC49898 (EMBL:AL603647) (251 aa) fasta FT scores: E(): 1.8e-23, 33.471% id in 242 aa" FT /protein_id="CAE44817.1" FT /translation="MHNAGKQVAAPLETPMPAATAALLAERADHPLYVASVEKGMRVLE FT AFDAARDSLSLTDIVQLTGMGKSAAQRFTHTWEALGYLAKDPQSRRYRLGPKVVELSYY FT FLRSDHLVSLAAPHLVALREHCGLAVNMSVLSGDDMIYLLRLPSRQLTLVEMLPGRRMP FT AWSNSAGRMLLSQRDDASVRDLLARAAPQLYTPRTQTDPQALLAEIRQAREDGYAITQD FT QVLLNQMGVATLLRDERRQPLAAISVTAAADEYPRARLVAEIVPQMLKAAYAICGA" FT misc_feature 500221..500781 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS complement(500903..503356) FT /transl_table=11 FT /gene="gyrB" FT /gene_synonym="parA" FT /gene_synonym="nalC" FT /gene_synonym="acrB" FT /gene_synonym="pcbA" FT /gene_synonym="himB" FT /gene_synonym="hisU" FT /locus_tag="BP0489" FT /product="DNA gyrase subunit B" FT /EC_number="5.99.1.3" FT /note="Similar to Escherichia coli DNA gyrase subunit B FT GyrB or ParA or NalC or AcrB or PcbA or HimB or HisU or FT B3699 SW:GYRB_ECOLI (P06982) (803 aa) fasta scores: E(): FT 6e-179, 59.902% id in 813 aa, and to Salmonella typhimurium FT DNA gyrase subunit B GyrB SW:GYRB_SALTY (Q60008) (803 aa) FT fasta scores: E(): 2.4e-180, 60.394% id in 813 aa" FT /protein_id="CAE44818.1" FT /translation="MSDQQNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGL FT HHMVFEVVDNAIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEI FT VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQRVA FT PLTATGPTDKRGTEVRFLADPAIFTNIEYHYEILSKRLRELSFLNNGVKVRLVDQRQGK FT EENFAFSGGVKGFVEYINRSKSVLHLNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVL FT CFTNNIPQRDGGTHLTGLRAAMTRVLNKYIADNELAKKAKVETTGDDMREGLACVLSVK FT VPEPKFSSQTKDKLVSSEVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAA FT RKAREMTRRKSVLEGAGLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAIL FT PLRGKVLNVEKARFDRLIASEQIATLITALGTSIGPDFNIDKLRYHRLIIMTDADVDGA FT HIRTLLLTLLYRQMPELVARGHVYIAQPPLYKVKVGRDERYLKDDQEEAQFMLQLALKD FT AELIPSQGAAPIRGEALNELARQYVLADAVISRLSRVFDVAALSALAEGVEIDLEDAER FT TKASAQRLSDALHAASPANGVEVVAEYDDVAEKHRLAVRRMHHGNVRVSVLDADFVRGA FT DYAVLAKSAKTFLGLVGAGAIVARGEGDKRKEQFVSDFREAMQWLRGEAERGLSKQRYK FT GLGEMNPEQLWETTMDPKVRRLLRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSA FT GNIDA" FT misc_feature complement(500939..501136) FT /note="HMMPfam hit to PF00986, DNA gyrase B subunit, FT carboxyl terminus" FT misc_feature complement(501719..502063) FT /note="HMMPfam hit to PF01751, Toprim domain" FT misc_feature complement(502025..502051) FT /note="ScanRegExp hit to PS00177, DNA topoisomerase II FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(502226..502786) FT /note="HMMPfam hit to PF00204, DNA topoisomerase II FT (N-terminal region)" FT misc_feature complement(502799..503239) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT CDS complement(503451..504560) FT /transl_table=11 FT /gene="dnaN" FT /locus_tag="BP0490" FT /product="DNA polymerase iii, beta chain" FT /EC_number="2.7.7.7" FT /note="Similar to Escherichia coli DNA polymerase III, beta FT chain DnaN or B3701 or Z5192 or Ecs4636 SW:DP3B_ECOLI FT (P00583) (366 aa) fasta scores: E(): 1e-52, 42.424% id in FT 363 aa, and to Neisseria meningitidis DNA polymerase III, FT beta subunit Nmb1902 TR:Q9JXS8 (EMBL:AE002539) (367 aa) FT fasta scores: E(): 1.3e-62, 47.696% id in 369 aa" FT /protein_id="CAE44819.1" FT /translation="MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAF FT IATDLEVQITTHADFGVGPENESTTVAARKLLDILKALPDTGEVKLGLASNKLSVQSAK FT SRFALQTLAASEFPTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLV FT FEPGRVRAVATDGHRLAHCATEADGIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAP FT GQIRFRFGDVELVSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFK FT GVRLQLAQHQMKISSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENVQW FT SVMPDANASALITLPDDEQFKYVVMPMRI" FT misc_feature complement(503466..504560) FT /note="HMMPfam hit to PF00712, DNA polymerase III beta FT subunit, N-terminal domain" FT misc_feature complement(504297..504314) FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT CDS complement(504563..505972) FT /transl_table=11 FT /gene="dnaA" FT /locus_tag="BP0491" FT /product="chromosomal replication initiator protein" FT /note="Similar to Escherichia coli chromosomal replication FT initiator protein DnaA or B3702 SW:DNAA_ECOLI (P03004) (467 FT aa) fasta scores: E(): 3.7e-81, 53.945% id in 469 aa, and FT to Proteus mirabilis chromosomal replication initiator FT protein DnaA SW:DNAA_PROMI (P22837) (466 aa) fasta scores: FT E(): 1.3e-81, 53.105% id in 467 aa" FT /protein_id="CAE44820.1" FT /translation="MKEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDEAQAVLRVAAP FT NRFKLDWVRKNFSHQIEALAAEWYQRPVQVTFELPGTSSAPRIPMAVPRPVAVSVPAVV FT AAVQQASEPAPPAPASADAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAENPG FT TSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDD FT FKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDS FT RLISRFDSGLTVAIEPPELEMRVAILLRKAESEGVPMPEEVAFFIAKHLRSNVRELEGA FT LRKVLAYARFHGRDVLTVDVCKEALKDLLSVSNGQITVENIQKTVADFYKIKVADMYSK FT RRPANIALPRQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDARAKQAELNH FT TLHVLEQTLKG" FT misc_feature complement(504635..504694) FT /note="ScanRegExp hit to PS01008, DnaA protein signature. FT Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(504635..505576) FT /note="HMMPfam hit to PF00308, Bacterial dnaA protein" FT misc_feature complement(505433..505456) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 506378..506512 FT /transl_table=11 FT /gene="rpmH" FT /gene_synonym="ssaF" FT /gene_synonym="rimA" FT /locus_tag="BP0492" FT /product="50S ribosomal protein L34" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L34 RpmH or SsaF or RimA or B3703 or Z5194 or Ecs4638 FT SW:RL34_ECOLI (P02437) (46 aa) fasta scores: E(): 1e-10, FT 65.909% id in 44 aa, and to Neisseria meningitidis 50S FT ribosomal protein L34 RpmH or Nma0551 or nmb1904 FT SW:RL34_NEIMA (Q9JRA1) (44 aa) fasta scores: E(): 3.1e-14, FT 86.364% id in 44 aa" FT /protein_id="CAE44821.1" FT /translation="MKRTYQPSVTRRKRTHGFRVRMKTRAGRAILNARRAKGRKRLAV" FT misc_feature 506378..506509 FT /note="HMMPfam hit to PF00468, Ribosomal protein L34" FT misc_feature 506381..506440 FT /note="ScanRegExp hit to PS00784, Ribosomal protein L34 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 506608..506979 FT /transl_table=11 FT /gene="rnpA" FT /locus_tag="BP0493" FT /product="ribonuclease P protein component" FT /EC_number="3.1.26.5" FT /note="Similar to Escherichia coli ribonuclease P protein FT component RnpA or B3704 SW:RNPA_ECOLI (P06277) (119 aa) FT fasta scores: E(): 0.00048, 30.894% id in 123 aa, and to FT Neisseria meningitidis ribonuclease P protein component FT RnpA or Nmb1905 SW:RNPA_NEIMB (Q9JXS6) (121 aa) fasta FT scores: E(): 1e-05, 38.679% id in 106 aa" FT /protein_id="CAE44822.1" FT /translation="MPRATLPAEARLHRPSEFAAALKGRRLARGAFFIVSASPCAPADD FT QPARARLGLVIAKRFAARAVTRNTLKRVIREAFRARRLALPAQDYVVRLHSKLTPASLT FT ALKRSARAEVDAHFTRIAR" FT misc_feature 506623..506973 FT /note="HMMPfam hit to PF00825, Ribonuclease P" FT CDS 506976..507248 FT /transl_table=11 FT /locus_tag="BP0494" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas putida hypothetical 9.2 kDa FT protein in rnpA 3'region SW:YIDD_PSEPU (P25753) (81 aa) FT fasta scores: E(): 2.2e-18, 65.714% id in 70 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa2045 FT SW:YK45_PSEAE (Q9I270) (86 aa) fasta scores: E(): 3.4e-16, FT 57.831% id in 83 aa" FT /protein_id="CAE44823.1" FT /translation="MIRRLLIAPIRFYRYFLSPWVGRQCRFTPTCSAYAIEAIERHGAW FT RGLWLAARRIGRCHPWSPGGYDPVPPGHGAGAQACCAHRHRTEPD" FT misc_feature 506979..507182 FT /note="HMMPfam hit to PF01809, Domain of unknown function FT DUF37" FT CDS 507297..508988 FT /transl_table=11 FT /locus_tag="BP0495" FT /product="probable inner-membrane protein" FT /note="Similar to Pseudomonas putida 60 kDa inner-membrane FT protein homolog SW:60IM_PSEPU (P25754) (560 aa) fasta FT scores: E(): 1.2e-81, 43.750% id in 576 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa5568 FT TR:Q9HT06 (EMBL:AE004968) (578 aa) fasta scores: E(): FT 1.6e-67, 42.905% id in 592 aa" FT /protein_id="CAE44824.1" FT /translation="MDIRRTVLWMIFSFSLLLLWNNWQIHNGKPSLFGGPAPEAAATQQ FT PKADANGTAASSTASIPSSPAAAPAAASVPGAAAPAAAKSEQVVITTDVLRLTFDSNGA FT QLIRAELLKYPSSSQSDKPTVLMDRSADLVYVAQTGVVGAPQGESFPTHQTPFHLVSSE FT RSLTGDTLDVVFEAESGGLKVTKTYTLHRGRYDVDVRHAMANTGGAPLNPALYLQLERD FT GTDPAGTSSFYHTFTGVAVYSEQDKFQKVTFSDIEKKKGTYIKQADNGWIGIVQHYFAT FT AWIPAQGKQRTNELLQVQQNLYAARTIEAVGTIAPGSSANVDAHLWVGPQDQKAMAAVA FT PGLELVVDYGWLTIIAKPLFTLMTWLHGLLGNWGWTIVALTVIIKAVFFPLAAASYRSM FT ARMKQVAPRLQALKEKYGDDRQKLNQAMMEMYRTEKINPLGGCLPMVVQIPVFIALYWV FT LLASVEMRGAPWILWVHDLSVRDPFFILPAIMMATMFLQIKLNPTPPDPVQAKVMMIMP FT LVFGGMMFFFPAGLVLYWCVNNTLSIAQQWTITRNLERQAAAAANR" FT misc_feature join(507315..507368,508413..508481,508608..508676, FT 508833..508901) FT /note="4 probable transmembrane helices predicted for FT BP0495 by TMHMM2.0 at aa 7-24, 373-395, 438-460 and FT 513-535" FT misc_feature 507519..507725 FT /note="HMMPfam hit to PF02096, 60Kd inner membrane protein" FT misc_feature 507837..508958 FT /note="HMMPfam hit to PF02096, 60Kd inner membrane protein" FT CDS complement(509219..510169) FT /transl_table=11 FT /locus_tag="BP0496" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44825.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 509219..509250 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(509219..510271) FT misc_feature complement(509255..509788) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(509846..509911) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(510240..510271) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(510251..510505) FT /pseudo FT /transl_table=11 FT /gene="acpD'" FT /locus_tag="BP0497" FT /product="N-terminal region of acyl carrier protein FT phosphodiesterase (pseudogene)" FT /EC_number="3.1.4.14" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP3054. Similar to the N-terminal regions of Escherichia FT coli acyl carrier protein phosphodiesterase AcpD FT SW:ACPD_ECOLI (P41407) (200 aa) fasta scores: E(): 4.3e-07, FT 40.476% id in 84 aa, and Pseudomonas aeruginosa FT hypothetical protein PA1962 TR:Q9I2E2 (EMBL:AE004622) (202 FT aa) fasta scores: E(): 4e-06, 45.570% id in 79 aa." FT /db_xref="PSEUDO:CAE44826.1" FT CDS 510627..511550 FT /transl_table=11 FT /locus_tag="BP0498" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative transcription FT regulator protein Smc01330 TR:CAC45914 (EMBL:AL591787) (313 FT aa) fasta scores: E(): 1.1e-45, 44.027% id in 293 aa, and FT to Pseudomonas aeruginosa probable transcriptional FT regulator Pa1961 TR:Q9I2E3 (EMBL:AE004622) (311 aa) fasta FT scores: E(): 2.4e-42, 43.464% id in 306 aa" FT /protein_id="CAE44827.1" FT /translation="MQDLNDLYYFAQVVEQGGFSAASRVLDVPKSRLSRRISQLEDRLG FT VRLLQRTTRRLRLTTAGERYLHYCQEMTASARAAEDAMRQLQSAPAGPVVVSCPVSIAQ FT QMLAPLLPEFLDAWPSVSVQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIA FT SGTLVASPAYLQRHGTPETPQELASHRTLSFNDPQNEVRWPLTNQRGESVEVAVQPVLA FT SNDFIVLTQAAVRGRGIALLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYPSRRGMM FT PAVRAFLDFLAKRVPPLVRQSDTARP" FT misc_feature 510636..511055 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 510675..510740 FT /note="Predicted helix-turn-helix motif with score 1087 FT (+2.89 SD) at aa 17-38, sequence GGFSAASRVLDVPKSRLSRRIS" FT CDS complement(511559..511957) FT /transl_table=11 FT /locus_tag="BP0499" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44828.1" FT /translation="MFPLLIRNLRHLLGLPVGADEPVTSLAIDEQWAVHIGCEDDMVTV FT LLPLGPAPDPLPGAALVNSLAQWPPVLLDLSEQGEAILWAREHVGRLTAEQLHALLVRV FT AARAAALMAPAAAPPAPQDTAEVAGRKA" FT CDS 512199..514169 FT /transl_table=11 FT /locus_tag="BP0500" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44829.1" FT /translation="MLSNNVNPVVGLSYRPLPETPPSGQAAAHPSMRLLEPNNDEFVRS FT VASPRLHHSSEALREVKHDVRQFQASGDRSLQQLRDLEVALNHWEASQPREFAKRGGLV FT AELRTAIDAYKQQLHEQAPSHANLDVKWLDGLRAGSMALQGDVKVWMQNLEDLHTRRPD FT EFAARLQQSTDALYSHLEAQWAKQHGTPPTASDVAGMPQWQEYTAMLRERFAGLDTIRP FT NLTAEENGVAILKTQTQLLALQRAQEALQASLADGVSHQGDVGLLRTQLLAGMVEGLIA FT LQQADDDSALWSRPSAADSGGRLSVEAGAKASTDFEAPASKGELLRGKGISGEAVLEAF FT ANIEMSVSGSRAGAAGEAEGSLRLYGESTARAEVSGSFEPFALSGSIGREEADGDTAAS FT ANPVLSLNVSAELSSKLGLEAQGSVTLGSLLKLDAEGRAEVGASAEVSGAAAIDKRSDG FT LSVRLEAQAEAFAGLKAEGTLTANLLHSKYADAHGLTASVTGSAANVGLGATAEGKLVA FT SPGQFEMGGEVGTTLGVGGNIGWNSKVDVNASTAYAYELASAAMARFDALRASQLDHDA FT KTSGNESQLNRLAANLQSHIDATSQKLDALNSASRIRKVDGFAAGDGAQAAAGLAAQMA FT LVGTGADLSHDIKITALNLRA" FT CDS complement(514195..515472) FT /transl_table=11 FT /locus_tag="BP0501" FT /product="C-terminal region of two component sensor kinase FT (partial)" FT /note="Partial. This CDS is the C-terminal region of BP3351 FT which was disrupted by the integration of a prophage. FT Similar to Salmonella enterica TctE TR:Q9FA47 FT (EMBL:AF020810) (488 aa) fasta scores: E(): 1.5e-21, FT 30.079% id in 379 aa, and to Pseudomonas aeruginosa FT probable two-component sensor Pa0757 TR:Q9I5H2 FT (EMBL:AE004510) (460 aa) fasta scores: E(): 4.6e-24, FT 37.500% id in 376 aa" FT /protein_id="CAE44830.1" FT /translation="MRKYYRIEEIDPPWPENLPGMPREPGRALSGMPEMPRPPYWPRSN FT GQPVFFDAVYRNDPVRAVAVVRDLYYRNQHRQVLVVVAESIGKRVEAEASAQRQEVLRD FT TRMLALVALLVWWGVNWALRPLVRLRNDIRTRRPDDLTPLDATRVPSEVAPLVEAVNHH FT IARHRRVLDEQSQFLADASHQLRTPLAIMLTQAQYALRERDPVRAQEGLRAIVDQLGRT FT RCLTEQLLSLAHASQADAPPRQELDLNDVARDVVLQYLPLAHEKQQDLGWVDARGDEAE FT GASDTAVVPVWGSEVELHEALSNLVHNAINYAPAGAHITVSVVRYPGRAEVQVADDGPG FT IEPLLRARAFARFDRMAGDRHASSSGSGLGLSIARAYARRNDGDIELRDGEPNAQGGIG FT LCAVFWIPLYDQSAPADEAEAFRRSG" FT misc_feature complement(514243..514596) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature complement(514759..514956) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT CDS 515656..516645 FT /transl_table=11 FT /locus_tag="BP0502" FT /product="integrase" FT /note="Similar to Escherichia coli shufflon-specific DNA FT recombinase Rci SW:RCI1_ECOLI (P10487) (384 aa) fasta FT scores: E(): 7.5e-17, 30.796% id in 289 aa, and to FT Pasteurella multocida putative integrase/recombinase Rci FT TR:Q9L6A5 (EMBL:AF237934) (329 aa) fasta scores: E(): FT 2.4e-36, 37.651% id in 332 aa" FT /protein_id="CAE44831.1" FT /translation="MGTYRKRGDTWRAEINKAGVRESKTFPTKREAQEWAAARETELAT FT IAVGGITPKSVAQVLQRYCDEISPRNKGHRWERVRIARFLKEEADLCAKLIHTISTADL FT GAWRDRRLAQVQPVSVRRDIALLRAAWGYARREWRNLKDDPWLDLTMPPEGRHRERIYT FT QDEVDRLVLALGWEEGQKVVTARQQTAVCFLLSLETAMRSGELLSLEHSQVDLKKRVAQ FT LDQTKNGDRRAVPLSSRAVALFKSLAGLNDVKVFTITPALRDVYFRQGKAIAEVDGATF FT HDARATALTRLSKKLSILELARMVGHRDPRSLMIYYRESAADIAKKLD" FT misc_feature 515656..523331 FT /note="Region of atypical GC content containing several FT phage-like genes. Potentially a degenerate integrated FT prophage." FT misc_feature 516121..516633 FT /note="HMMPfam hit to PF00589, Phage integrase family" FT CDS complement(516642..516842) FT /transl_table=11 FT /locus_tag="BP0503" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage P4 hypothetical 9.7 kDa FT protein SW:Y9K_BPP4 (P12552) (88 aa) fasta scores: E(): FT 0.82, 30.357% id in 56 aa, and to Vibrio cholerae FT transcriptional regulator Vc0497 TR:Q9KUL8 (EMBL:AE004136) FT (66 aa) fasta scores: E(): 0.023, 28.571% id in 63 aa" FT /protein_id="CAE44832.1" FT /translation="MEDRFITHTEIASLLQLNPAHVRDRLTKRKDFPRPFIFGGARRWK FT YSEVEDWIDGRRQAPDGRRAA" FT CDS complement(516843..516962) FT /transl_table=11 FT /locus_tag="BP0504" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44833.1" FT /translation="MPDLPYLALLGIAVGAVVVLALALHRWLNREIEKEEREE" FT misc_feature complement(516879..516944) FT /note="1 probable transmembrane helix predicted for BP0504 FT by TMHMM2.0 at aa 6-28" FT misc_feature complement(516900..516962) FT /note="Signal peptide predicted for BP0504 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.808) with cleavage site FT probability 0.771 between residues 21 and 22" FT CDS complement(516955..517296) FT /transl_table=11 FT /locus_tag="BP0505" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf39 orf39 TR:Q9MC83 FT (EMBL:AF165214) (108 aa) fasta scores: E(): 0.018, 36.937% FT id in 111 aa, and to Mycobacteriophage TM4 Gp13 TR:Q9ZX64 FT (EMBL:AF068845) (139 aa) fasta scores: E(): 9.6, 32.609% id FT in 92 aa" FT /protein_id="CAE44834.1" FT /translation="MELAAKAAGMGVWPGTGFQAHMLFTRPAKADPDGKVAGIEWNPLT FT DDGDALRLAVKLRLWVHVDDYGGSARRPGDTWFGCAAHKYGGIEAATRRAIVRAAAEIG FT AKMQEAAHA" FT CDS complement(517307..518494) FT /transl_table=11 FT /locus_tag="BP0506" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44835.1" FT /translation="MMENQHQKIKGYRDLSQAEIDAMNEAKALAEQCGALVQKLRAPVA FT DERAPHIKALQDLRLGVEMDQHCMEDGDAKLAALDAAITALRWSAGALQALNIEADKIT FT LDGETRTVGDILDHADRALASAPVAGEAQPVIHQHGFAADNQRLRAINESLDKQLEEVM FT TERDEYHDMADKLANAIAHHLLVEIGEHSSSNCPWMRALDAIENAAPQASAYGHKPEPL FT DTSPGHSAPQAPAGWRWTLHPAGLHPDVYAAAAARDSAEDVRNAALEEAAQVLDRLHYE FT NRRYHTKFRQAANAVRTLKSTPAPTAAEDSQASEAVRDADIPASLAQLVAAVKGMTKLY FT PHVWDRTDGGLVVFPENVARFDAAFDALRIAVGEAADDDETAVLAARKEGDGNAN" FT CDS complement(518528..519055) FT /transl_table=11 FT /locus_tag="BP0507" FT /product="hypothetical protein" FT /note="Similar to the internal region of Bordetella FT pertussis pertactin outer membrane protein PrnA TR:AAK92093 FT (EMBL:AF348485) (910 aa) fasta scores: E(): 2.5, 25.767% id FT in 163 aa, and to Bordetella pertussis pertactin Prn7 FT TR:Q9S6N1 (EMBL:AJ133784) (910 aa) fasta scores: E(): 3.4, FT 24.540% id in 163 aa" FT /protein_id="CAE44836.1" FT /translation="MFSLQEQTAILAHLNVRTERHGDEPAGGADLKISFTTGNGILSEF FT HPRLRHGLYKAEEAPNQAEMAVGEALTERIYADLIDRVRLKHDLKGAKVLIGFGLGGSS FT DIQMDPVDVDGFQAELHEGGSVTLTFRVKCHPTGEQVKKLHEVLGNEITISVTPAIEKQ FT GALGLNLEPEAA" FT CDS complement(519113..519760) FT /transl_table=11 FT /locus_tag="BP0508" FT /product="phage-related exonuclease" FT /note="Similar to Escherichia coli O157:H7 exonuclease FT Ecs1174 TR:BAB34597 (EMBL:AP002554) (226 aa) fasta scores: FT E(): 2.4e-11, 30.918% id in 207 aa, and to Bacteriophage FT VT2-Sa exonuclease Exo TR:Q9T1N7 (EMBL:AP000363) (226 aa) FT fasta scores: E(): 2.8e-11, 30.918% id in 207 aa" FT /protein_id="CAE44837.1" FT /translation="MNRYILSPHEQGSDGWLPDRCGRVTGSRAADMLAMTAKKEWSTKR FT ADYKFELAIEVLTGMPQGSDYTSKEMQWGIDQEPFARMAYEEASGNVAIESGFMYLPDV FT AAGCSVDGLFVEDGRRGVLETKCPKSTTHIRYLEAGTLPDQYRPQCLHNVWVTGAEFAD FT FVSFDPRFPEELQLFVCRFIPTAKELADHEKAVLQFLAERDELVVQLKRLAA" FT CDS complement(519757..520743) FT /transl_table=11 FT /locus_tag="BP0509" FT /product="phage-related DNA recombination protein" FT /note="Similar to Escherichia coli RecT protein RecT or FT B1349 SW:RECT_ECOLI (P33228) (269 aa) fasta scores: E(): FT 3.4e-09, 30.047% id in 213 aa, and to Escherichia coli FT O157:H7 recombinase RecT protein Ecs1933 TR:BAB35356 FT (EMBL:AP002556) (269 aa) fasta scores: E(): 1.3e-09, FT 30.516% id in 213 aa" FT /protein_id="CAE44838.1" FT /translation="MNNLAVITQDIYNARESFAAVLTDQSISFEKEAGFAIQVLQNNDY FT TLKVATGNRQSVINAVTNVAAIGISLNPAKRQAYLVPRDGRICLDISYMGLIDPAVATG FT SIRWAQAELVRSADTFALNGFDAPPTHVFNPFSKERGEIIGAYVVVKTADGDYLTTPMS FT RDEIDGIMNRSQSVKSGKSSPWKTDYGEMAKKTVVKRAYKYWPKNDRLSEAIHHLNTDG FT GEGLATTASAPVDPDLLPRLRKAVDAARDAAALEKVWKDGLAEVRATRDMAIYNAFKSA FT VAARGAVLRGEAVPTEPPPDDGKTIDEPPRDPSDDGFGRDDQGGIQE" FT CDS complement(520747..520929) FT /transl_table=11 FT /locus_tag="BP0510" FT /product="phage-related putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE44839.1" FT /translation="MSRRLIAYLRATRLDLDLAGYAAMVAALAVATGLIGPTLDARSTL FT TACEGCGKTAVAAKE" FT misc_feature complement(520768..520791) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(520813..520869) FT /note="1 probable transmembrane helix predicted for BP0510 FT by TMHMM2.0 at aa 20-39" FT CDS complement(520926..521303) FT /transl_table=11 FT /locus_tag="BP0511" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44840.1" FT /translation="MLPLTYPTECGTAAVVRPLTDAERLAELRRDLDADLHYALVAQRC FT VRWPYGDPELVAEALYAATIGDAQSEAAFSLLVRAAARGESAVSVGTLFVEWTKLARAR FT LLDTLVELTEDGQRVTFGSRQ" FT misc_feature complement(521061..521303) FT /note="ScanRegExp hit to PS00430, TonB-dependent receptor FT proteins signature 1." FT CDS complement(join(521306..521374,521374..521496)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0512" FT /product="phage-related hypothetical protein (pseudogene)" FT /note="no significant database matches" FT /db_xref="PSEUDO:CAE44841.1" FT CDS complement(521537..522004) FT /transl_table=11 FT /locus_tag="BP0513" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44842.1" FT /translation="MSDTKATLKFEVTLADLRRDGACFEGYNKVVRAVQGREFSGDDSE FT RESYIKFSHAEPVALTAILASNGLDDALWALRCVPGVDRDARLFAVWCARQVEHLMTDQ FT RSKDALDVAERFANGEATEEERAAARAAAWAAQKEMFIAMCEGRAPWQQTT" FT CDS complement(522040..522990) FT /transl_table=11 FT /locus_tag="BP0514" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44843.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 522041..522071 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(522041..523092) FT misc_feature complement(522076..522609) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(522667..522732) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS complement(523089..523331) FT /transl_table=11 FT /locus_tag="BP0515" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44844.1" FT /translation="MEAKLIERVALNDEFQAACQRYAHGNGSSMAIAGEALRAAGMPEL FT LQAAVLVRDYLHRNGTRQGDVPLALIEAIRATGAA" FT CDS complement(523498..524139) FT /transl_table=11 FT /locus_tag="BP0516" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44845.1" FT /translation="MKPLLVAALSATALLVGCAAKQPQLTRSEYLKVTQRTYEGKSAEE FT VLNAAEKLFRLADGDDFKFFHDDDSMSASRSWIVYVVLAAAMGTDTWTVRTKEIPGGVR FT VSAALNTSAGSVLPMPTTGGDMSAGTTPGMGGNVPGTAIYDVFWARMDYLLGLSDQWMT FT CEESNRRVSTGAVWGPNDALCNGFNVKDDLPAELVGKIEKPKPSSTFNDG" FT CDS complement(524150..525100) FT /transl_table=11 FT /locus_tag="BP0517" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44846.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 524150..524181 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(524150..525202) FT misc_feature complement(524186..524719) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(524777..524842) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(525171..525202) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(525210..525605) FT /transl_table=11 FT /locus_tag="BP0518" FT /product="conserved hypothetical protein" FT /note="Similar to Saccharomyces cerevisiae highdosage FT growth inhibitor Hig1 TR:BAB20815 (EMBL:AB050475) (129 aa) FT fasta scores: E(): 6.3e-10, 34.579% id in 107 aa, and to FT Halobacterium sp Vng2099C TR:Q9HNH7 (EMBL:AE005099) (127 FT aa) fasta scores: E(): 2e-10, 38.532% id in 109 aa" FT /protein_id="CAE44847.1" FT /translation="MPASTAPARYLAPDTLARPGGHYSHACVANGMVYVSGQLPIGPDG FT TKLADAPFEAQARQVLDNVAAALAAAGSGIDRLVQVRVYVDSVENWPAFDAIYAEWAGA FT ARPARAVVPTGPLHYGFKVEVEAVALA" FT misc_feature complement(525213..525563) FT /note="HMMPfam hit to PF01042, YjgF family" FT CDS 525775..526476 FT /transl_table=11 FT /locus_tag="BP0519" FT /product="probable glutathione S-transferase" FT /note="Similar to Loligo opalescens S-crystallin TR:Q25368 FT (EMBL:U19300) (217 aa) fasta scores: E(): 3.2e-06, 24.537% FT id in 216 aa, and to Rhizobium meliloti probable FT glutathione S-transferase protein TR:CAC49678 FT (EMBL:AL603646) (240 aa) fasta scores: E(): 5.3e-42, FT 52.321% id in 237 aa" FT /protein_id="CAE44848.1" FT /translation="MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLADMR FT RRRDTAPFAPPYLVADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTA FT EAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWS FT YADLSLYHVVEGLLHAFPRRMRTLMHRYPRLMTLHARVAELPELRGYLASDRRLPFGDG FT IFRHYPELDGA" FT misc_feature 525940..526389 FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain" FT CDS 526740..527600 FT /transl_table=11 FT /locus_tag="BP0520" FT /product="putative exported protein" FT /note="Similar to Escherichia coli HflC protein HflC or FT HflA or B4175 or Z5782 or Ecs5151 SW:HFLC_ECOLI (P25661) FT (334 aa) fasta scores: E(): 2.4e-06, 24.806% id in 258 aa, FT and to Thermotoga maritima FtsH protease activity modulator FT HflC Tm1823 TR:Q9X2E3 (EMBL:AE001819) (283 aa) fasta FT scores: E(): 4.3e-09, 26.210% id in 248 aa" FT /protein_id="CAE44849.1" FT /translation="MIPRNAKLAAGAGVLFVLILMLAFSSWFQVDQGERGVVLRNGKLV FT RVSEPGLDFKTPFIDSVSTVSVRDHTFIFENLEAYSYDQQPATLRVSVTYRVPAEHVAE FT LYAEYGTISNLQMRVLERKTPDAVKNVFGRYTAVRAIQERQKLGVDVNAAVLSAMDGAP FT VQIVGVQVEEVGFSKAYEHSIEQRMLAQVQIETTRQQKETAMITAEIQVVKAKAEADAR FT RQQFTAEADGIRLRGEAEAASIRAKAEALVANTNLVSLNAVEKWDGVLPATQVPGAALP FT FIGIK" FT misc_feature 526740..526814 FT /note="Signal peptide predicted for BP0520 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.781 between residues 25 and 26" FT misc_feature 526758..526826 FT /note="1 probable transmembrane helix predicted for BP0520 FT by TMHMM2.0 at aa 7-29" FT misc_feature 526773..527402 FT /note="HMMPfam hit to PF01145, SPFH domain / Band 7 family" FT CDS complement(527675..528010) FT /transl_table=11 FT /locus_tag="BP0521" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical 12.0 kDa FT protein in baeR-ogrK intergenic region YegP or B2080 FT SW:YEGP_ECOLI (P76402) (110 aa) fasta scores: E(): 2.1e-17, FT 54.545% id in 110 aa, and to Pasteurella multocida FT hypothetical protein Pm0519 TR:Q9CNB3 (EMBL:AE006087) (114 FT aa) fasta scores: E(): 7.9e-14, 47.222% id in 108 aa" FT /protein_id="CAE44850.1" FT /translation="MSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASV FT QKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSNAPGAP FT TKDQTQA" FT CDS complement(528151..529296) FT /transl_table=11 FT /locus_tag="BP0522" FT /product="putative metal-activated pyridoxal enzyme" FT /note="Similar to Arthrobacter sp metal-activated pyridoxal FT enzyme TR:O82872 (EMBL:AB010956) (379 aa) fasta scores: FT E(): 1.6e-16, 31.026% id in 390 aa, and to Agrobacterium FT tumefaciens Agr_l_1808p TR:AAK89478 (EMBL:AE008289) (397 FT aa) fasta scores: E(): 7.1e-74, 55.526% id in 380 aa" FT /protein_id="CAE44851.1" FT /translation="MTTTHAHPLDTLDTPAAIVDVARMQHNIARMQDRMNGLGVSLRPH FT VKTSKCTPVALAQLAAGAHGVTVSTLKEAEQFFAAGITDILYAVGMAEHRLPAALALRR FT RGCDLKIITDNAGSARAIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALH FT EGGMRLGGVMTHAGSSYDLDTPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTP FT TALSAAQLQGVTEVRAGVYVFFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDA FT GWMAMSRDRGTQKQKQDFGYGQVCTADGAPLAGYTLIGANQEHGIMAGGPAGEDVTTRF FT PVGMRLRILPNHACATGAQFPQYHALEADGGLQAWERAHGW" FT CDS complement(529324..529983) FT /transl_table=11 FT /locus_tag="BP0523" FT /product="probable haloacid dehalogenase" FT /note="Similar to Pseudomonas putida 2-haloalkanoic acid FT dehalogenase H-109 DehH109 SW:HAD2_PSEPU (Q59728) (224 aa) FT fasta scores: E(): 1.5e-05, 28.241% id in 216 aa, and to FT Thermus thermophilus hypothetical 24.1 kDa protein YsaA FT TR:Q9F1Q2 (EMBL:AB048605) (218 aa) fasta scores: E(): FT 6.3e-07, 35.567% id in 194 aa" FT /protein_id="CAE44852.1" FT /translation="MSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEY FT LRLAYGCGRYVPYEQLVREAARATGLPESAPAALEAGWHELPVWDDARALLRALRPHCK FT LAVVTNCSRDLGRQAAGLLGVDWDAIVTAEEAGFYKPDPRPYRMALQALQVPADAAAFV FT AGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAVALPWLQAFRPAVR" FT misc_feature complement(529426..529956) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS join(530076..530852,530860..530991) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0524" FT /product="probable transcriptional regulator (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 259. The frameshift occurs within FT a polymeric tract of (GGCGCGC)3. The sequence has been FT checked and believed to be correct. Similar to Pseudomonas FT aeruginosa probable transcriptional regulator Pa3565 FT TR:Q9HY52 (EMBL:AE004777) (306 aa) fasta scores: E(): FT 4.4e-27, 36.700% id in 297 aa, and to Agrobacterium FT tumefaciens Agr_l_412gMp TR:AAK89475 (EMBL:AE008289) (304 FT aa) fasta scores: E(): 5.2e-45, 43.478% id in 299 aa" FT /db_xref="PSEUDO:CAE44853.1" FT misc_feature 530085..530453 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 530127..530219 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT variation 530840..530860 FT /note="(GGCGCGC)3 in pertussis; (GGCGCGC)2 in parapertussis FT and bronchiseptica" FT CDS 530988..531194 FT /transl_table=11 FT /locus_tag="BP0525" FT /product="putative integrase (Remnant)" FT /note="Pseudogene (remnant). Similar to the N-terminal FT region of Escherichia coli putative lambdoid prophage Rac FT integrase IntR or B1345 SW:INTR_ECOLI (P76056) (411 aa) FT fasta scores: E(): 0.7, 39.583% id in 48 aa, and to FT Bacteriophage 933W integrase Int TR:Q9XJG6 (EMBL:AF125520) FT (444 aa) fasta scores: E(): 5.1, 37.778% id in 45 aa" FT /protein_id="CAE44854.1" FT /translation="MSGKFEGVRPASESSIEISFVYQGRTCVRRLRMKPTVANLKRAAE FT QRAAIVETIARGEFDPLVAPRRQ" FT CDS 531303..531428 FT /transl_table=11 FT /locus_tag="BP0526" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44855.1" FT /translation="MRAPFYLSEEDNMKTCIHALAAVSGDARDQRETDAEMRYGK" FT CDS 531460..531591 FT /transl_table=11 FT /gene="ecnA1" FT /locus_tag="BP0527" FT /product="entericidin A anti-toxin precursor" FT /note="Similar to Escherichia coli anti-toxin entericidin A FT precursor EcnA or B4147.1 SW:ECNA_ECOLI (P56548) (41 aa) FT fasta scores: E(): 0.86, 42.857% id in 42 aa, and to FT Rickettsia conorii hypothetical 6.7 kDa protein Rc1154 FT TR:AAL03692 (EMBL:AE008664) (64 aa) fasta scores: E(): FT 0.008, 46.512% id in 43 aa. Note in E. coli ecnA is located FT next to the bacteriolytic toxin ecnB. This is not the FT situation in B. pertusis. However, B. pertusis does possess FT an ecnB orthologue BP2531. B. pertusis also carries a FT second possible ecnA paralogue, BP2565" FT /protein_id="CAE44856.1" FT /translation="MNNRIRAALLAAITLVALAGCNTMSGAGKDIERGGEKIQEKAQ" FT misc_feature 531460..531534 FT /note="Signal peptide predicted for BP0527 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.463 between residues 25 and 26" FT misc_feature 531478..531537 FT /note="1 probable transmembrane helix predicted for BP0527 FT by TMHMM2.0 at aa 7-26" FT misc_feature 531490..531522 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 532218..538940 FT /transl_table=11 FT /locus_tag="BP0529" FT /product="autotransporter" FT /note="Similar to Mycobacterium tuberculosis PgrS-family FT protein Rv3345c or Mtv004.01C or Mtv016.45C TR:O53395 FT (EMBL:AL021841) (1538 aa) fasta scores: E(): 5.8e-17, FT 26.329% id in 1618 aa, and to Salmonella typhimurium ShdA FT TR:Q9XCJ4 (EMBL:AF140550) (2035 aa) fasta scores: E(): FT 6.6e-16, 26.428% id in 2206 aa" FT /protein_id="CAE44857.1" FT /translation="MGSGPSGMNERVTVNQGARIETNASAAISVGTSGQVRIEGGAVVQ FT STVNTAASGQYAKTLEAASNNNISIQVNAQLLAKGSASQSSALGLSGAGNTVTNHGTIR FT ADNAAAIWVTANTANAANTIDNYGTIETVLNGGYANAIGSTRNNSATGAGVTVRNHANG FT RIVGNVKFEAGDDSVILDGGSTITGSLNGGSGNNSLTLKAGDGTLGRAIRNFGTITKQE FT AGTWTLNGQVGRNDNNLKSTVKVEGGTLVLRGDNSGATQGGVLQVSAGATADVTAASAM FT QSISNAGTVQFTQDSNAAYAGVLSGTGSIVKRGGGDLTLTGNNTHTGKVVVEAGSLSVS FT AANNLGGAGSSVQLKGGALALKKTIVVNRGLTLDSGAQTLIIEPGTTTTWQGQVSGAGK FT LVTQGGTLVLEHASNTYSGGTEINNGTLRAAHDASLGSGTLALKNSQLAATDSFTATRA FT LTLAGNESIDVAATKILSWNGEISGAGTLVKEGQGTLLLRGTNQQNGGTTVNAGTLQIS FT RDANLGRGALALNDGTLQSTGSFATSRAATLRGQATMEVDASHTVTWNGELSGGGMLRK FT SGQGTLVLAGANTYSGGTVVEAGALRAGHEDNLGRGAITLQGGDLLAGGSFSSNRDLTL FT VRGSLDVARDATLTWSGAISGAGDLVKKGDGRLTLTGVNEYAGQTVLRGGKLRVARDEN FT LGRGALVLEDNTVFESMGSHAATRQVTLKGAPKVETLDGTTLEWRGTVDGDGKLYKQGG FT GTLVLSGNNTYAKGVEVWGGVVQVSRDQNLGAANGAVTLNGGGLAANGDFTSNRQLELT FT AGAKAIDVAAGKDVTWRGVVNGAGALTKAGDGTLALAGANTYTGGTRLQGGTVQVSRDN FT NLGQAAGAVTFDGGRLANTGSFATARTATLNKAGQIDTDRGTTLTWNGAIGGKGELRKQ FT GAGTLVLGGANTYQGDTRVEAGTLQVSADANLGQGAVHLHDSRLATTGTFATSRRLELT FT GRGAVQAAAAATLDWRGTVAGAGTLVKEGAGTLVLAGDNQHAGGTEVRAGTLQVSRATN FT LGPGALALENAALATTASFTATQAATLTGNAAIDTAAGTTLGWEGAIGGTGSLHKKGEG FT KLVLVKDNHHDGGTTIHAGTLQVSRDANLGSGQSAVTLDGGALAVSAGFSSGREIVVGA FT GHGALSVTGGHTLQWQGQVGGAGALTKTGDGTLVLEHDNTHAGGTRITGGVLRVSRDEN FT LGEAHGMLTLDGGTLSTTAGFASRRNATVGNGGGRIVVADAATLDLQGDVAGAGRLVKE FT GAGTLALGGTNTYAGGTVVEAGTLRVARDANLGGGALTLNNSRLHATAGFATGRDATLS FT GRASIDTDDRATLQWRGTVNGAGRLVKQGLGTLVLDGDNRYAGGTEVNAGTLQVARDAN FT LGAGDVALNGSSLAATASFATARTATLSGAAAIDTADGATLDWNGLLDGDGALVKQGNG FT TLALAAANRYGGGTIVKAGAVRIARDANLGRAGTGVTLDGGALATTADLATGRAATLGA FT ANGTLDVAAGTRLDWNGAIGGAGALTKTGAGTLALNHDNQHAGGTLVHGGTLRIARDAN FT LGAAGTAVTLDGGTLATTASLAPERALRVGARNGVLLPDAGTTLDWRGVVAGAGKLTKA FT GPGTLVLSADNRHGGGTAVTGGTLQVSRDANLGAAAGALTLDGGTLLSTASFASARVAT FT LDAAGGTFVTRDGTRLDWDGAIGGAGGLVKEGAGELRLGNANTYQGPTRIAAGRLAVNG FT SIASPVTVEQAGVLGGTGRIVGDVANRGVVAPGNSIGALTVAGNYAGTGGSLEVEAVLG FT GDAAPADRLVLDGGAASGVTPVVVKPQGGVGGLTLRGIPVVVAQGGATTAPGAFRLAQP FT LVAGAYEYQLLRGAGDGAAAQAQDWYLRTSRVERDKAGRIVKVVPFYRPEVALYAGTPM FT LMRMVGTEALGSYRERAGQPGAAAPEAGAAARRGVWARTFGRRFERSAGSEAAPSFNGS FT LAGMQLGADLYTRRSATRHADAFGVFGGYATARGDVRGLARGEIQAVGTSTLRAAQLGA FT YWTHTGPSGWYVDTVLAGTRYKQQTSSSAHVGATSRGWGMMASVEAGYPWQLNPRWQIE FT PQAQLVYQQLGIANGADRVSSVSYKTPDALTGRLGTRLAGQYAYGKAQLRPFMGVSLLH FT DFTGADTVTFAGVHSVRASRQNTAVDLKAGVDTQLGKSVGLWGQVGYGKSVGSGDGSDR FT GWSANLGLRVAY" FT misc_feature 533328..533363 FT /note="ScanRegExp hit to PS00141, Eukaryotic and viral FT aspartyl proteases active site." FT misc_feature 538851..538874 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 538974..539573 FT /transl_table=11 FT /locus_tag="BP0530" FT /product="conserved hypothetical protein" FT /note="Similar to Burkholderia cepacia ureidoglycolate FT hydrolase AllA TR:Q9AP01 (EMBL:AF317836) (177 aa) fasta FT scores: E(): 0.0025, 28.289% id in 152 aa, and to FT Rhodobacter capsulatus probable ureidoglycolate hydrolase FT SW:ALLA_RHOCA (O68109) (161 aa) fasta scores: E(): 0.0036, FT 32.558% id in 129 aa" FT /protein_id="CAE44858.1" FT /translation="MRLYWRMPTTTPALRPQDLTETAFAPYGWMLGKPLPAGDDVLRFS FT NPATDFWQEHVFDTGAGAGRETEVLWVNYRISQPGFDTLEKHLLTQQAIVPLTGAIVQI FT VARSAFDGSPDLASLAAFVVPPGQGICMRPGCWHATRISGGEVTCLMLTRRSTTLDLVR FT HLHGEPARESEIVAIVPHGLDLPARPTAEGPAPHGR" FT CDS 539846..540823 FT /transl_table=11 FT /locus_tag="BP0531" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus 2,4-diphenoxyacetic FT acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta FT scores: E(): 3.2e-27, 34.323% id in 303 aa, and to FT Comamonas testosteroni OrfJ protein TR:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 3.5e-28, FT 32.407% id in 324 aa" FT /protein_id="CAE44859.1" FT /translation="MYRIVSALAVSVTCLAGMGAAQADQGAAAYPDKPIKIVIPYSAGG FT GTDQFMRIVSERASRVLGQPITILNKPGGSTVIGVNAVIGAAPDGYTLLVSTNTSYTLI FT PYVMSPPPYAPEKSLDYVATLGQTSMVLTANKTMPSDLKTVLDSARQSPGRYTYATYGV FT GSSTHLAGEVFMNDTGVEFRHIPYKGVEAVTALAGNQVDLMIDGINAAGTMLDAGKTQA FT LVVLQRTRSQFLPDTPTLVEAGYPEAAENVISYVMAAPKGTPAAVIDKLQNSFAEALRD FT PGVLAQAKAMRTEAAFKGPAQTQAFVDSQPALFKDIVEKKNIKF" FT misc_feature 539846..539914 FT /note="Signal peptide predicted for BP0536 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 23 and 24" FT CDS 540858..542411 FT /transl_table=11 FT /locus_tag="BP0532" FT /product="putative substrate-CoA ligase" FT /note="Similar to Mycobacterium tuberculosis CDC1551 FT substrate--CoA ligase Mt2580 TR:AAK46884 (EMBL:AE007094) FT (547 aa) fasta scores: E(): 2.8e-44, 32.422% id in 512 aa, FT and to Rhizobium meliloti putative fatty-acid-CoA ligase FT protein Smc00261 TR:CAC46268 (EMBL:AL591788) (549 aa) fasta FT scores: E(): 1.5e-41, 32.184% id in 522 aa" FT /protein_id="CAE44860.1" FT /translation="MQPPGHTWWDIIEEHARRFPERDALAHGDGAITYGELAARVRRCA FT AGLSARGIGAGDCVALLAPPTPDAMVCLLAAARLGALWVGLNPRYQPREMAYVIGHAQP FT KLVLSVREFEARRYADDLDAALATLAPQARRPDLLFYDSRASCDEAMLHALCDAPDAPC FT PAPFEDAAQPCMLVYTSGTTGIPKGVLLSQTALIYRSTVQARTFATQSHPVVINFAPIN FT HIGGMHFRGLSQILAGGTIIYQERYRPAEVMGLIEKHRVNMLMLGSTMLQMLIREPSFD FT MSIMRGMEWFIFSGAAIPMPILQRVKEHCPRIGSTYGLTESCGSVSYIVASDSLEAAAY FT TVGRAIPEGQLRVADEQGQPLPAGTQGELQVRGQYCMNGYLRDAAATAGAFTRDGWLKT FT GDMAQRDDDGNFRLVGRIKEMYKSGGYNVYPREIEVVLEQHPNVLMSAVIAVDDELYQQ FT VGHAHLILRPDTEVSEPELVQWCRERMANYKVPKRIFVRNSLPMLSIGKVDKIALRQQH FT " FT misc_feature 540954..542201 FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature 541383..541418 FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 542419..543159 FT /transl_table=11 FT /locus_tag="BP0533" FT /product="probable transcriptional regulator" FT /note="Similar to Pseudomonas putida efflux pump regulator FT SrpS TR:Q9R9U0 (EMBL:AF061937) (259 aa) fasta scores: E(): FT 4.8e-12, 33.471% id in 242 aa, and to Streptomyces FT coelicolor putative transcriptional regulator Stah10.11C FT TR:Q9RKU6 (EMBL:AL132824) (270 aa) fasta scores: E(): FT 1.6e-11, 33.065% id in 248 aa" FT /protein_id="CAE44861.1" FT /translation="MSNPLNRYHHILHAIAGRPGGLSLADLAAATGLPRSTTHRMATTL FT REIDYLDQDDASGNFVLGDGLIGLMRSSLAQDSKLALFDPALNFVVGRLEETAFCARLW FT NDKVDLVQAVTPTRKDQLYIYPGVGGRPLDKCSSSKAILAYLDPARIQALLEPLASSTP FT GLRVDTLMQELDQVHRQGFAICDGEIDEGVLSVACPVMSGPARGLYSIGVVGPAARLKS FT HDLQEIVAVLHSAADLAAAELLNS" FT misc_feature 542482..542547 FT /note="Predicted helix-turn-helix motif with score 1208 FT (+3.30 SD) at aa 22-43, sequence LSLADLAAATGLPRSTTHRMAT" FT misc_feature 542596..543144 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS 543183..543947 FT /transl_table=11 FT /locus_tag="BP0534" FT /product="probable enoyl-CoA hydratase/isomerase" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydratase Crt or Cac2712 FT SW:CRT_CLOAB (P52046) (261 aa) fasta scores: E(): 1.8e-17, FT 31.624% id in 234 aa, and to Sulfolobus solfataricus enoyl FT CoA hydratase Orf-C09_013 or Paaf-2 TR:Q9UX44 (EMBL:Y18930) FT (252 aa) fasta scores: E(): 2.7e-17, 29.279% id in 222 aa" FT /protein_id="CAE44862.1" FT /translation="MKEIISLEKTGAVATVTIDRGGKRNALSQEMVLRLTDIALELQQD FT TSVACIVLSGNQNEFSAGIDLGDAMRWSLDDKTQLERRAIALRGTRLCKAWEDLPQITI FT AAVEGMNVGGGIALTLACDWRAMGKSAFLFVPEVQIGIPLGWQTIPRLVNLVGPARAKQ FT IVLLGEKMSADTALEWGVADFVVADGAACAHAQDLAARIGKMPELAVRMSKQSINAYAN FT ALNHLGSHMDVDQAMLCGQTRDAVAVRDRYAR" FT misc_feature 543222..543743 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature 543516..543548 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 543992..544327 FT /transl_table=11 FT /locus_tag="BP0535" FT /product="probable carboxymuconolactone decarboxylase" FT /note="Similar to Haemophilus influenzae hypothetical FT protein Hi1053 SW:YA53_HAEIN (Q57498) (113 aa) fasta FT scores: E(): 3.8e-17, 52.885% id in 104 aa, and to FT Neisseria meningitidis hypothetical protein Nmb1590 FT TR:Q9JYH0 (EMBL:AE002509) (111 aa) fasta scores: E(): FT 6.7e-16, 50.459% id in 109 aa" FT /protein_id="CAE44863.1" FT /translation="MLDWNQYRSELMTRIGEIAKASPETVKGYQQLSAAGKQTNQLDAK FT TRELIALAVAVTTRCDGCIAVHAKAATDNGATKGEIAEALGVAVALNAGAALVYSARVM FT DAVDAAQ" FT misc_feature 544022..544309 FT /note="HMMPfam hit to PF02627, Carboxymuconolactone FT decarboxylase" FT CDS 544381..545310 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0536" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The insertion occurred near the FT C-terminus (following codon 302), replacing the 28 FT C-terminal aa with 11 aa encoded within the IS481 element. FT It is not clear whether this insertion affects the function FT of the protein. Similar to Rhizobium meliloti conserved FT hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) FT (330 aa) fasta scores: E(): 1.4e-42, 48.000% id in 275 aa, FT and to Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 FT (EMBL:AE008213) (329 aa) fasta scores: E(): 4.4e-39, FT 46.099% id in 282 aa" FT /db_xref="PSEUDO:CAE44864.1" FT misc_feature 544381..544449 FT /note="Signal peptide predicted for BP0536 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.958 between residues 23 and 24" FT misc_feature 545026..545076 FT /note="ScanRegExp hit to PS00237, G-protein coupled FT receptors family 1 signature." FT CDS complement(545270..546220) FT /transl_table=11 FT /locus_tag="BP0537" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44865.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 545270..545301 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(545270..546322) FT misc_feature complement(545306..545839) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(545897..545962) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(546291..546322) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(546339..547283) FT /transl_table=11 FT /locus_tag="BP0538" FT /product="arginase" FT /EC_number="3.5.3.1" FT /note="Similar to Bacillus caldovelox arginase RocF FT SW:ARGI_BACCD (P53608) (299 aa) fasta scores: E(): 3.5e-44, FT 44.000% id in 300 aa, and to Rhizobium loti arginase FT Mll6778 TR:Q988E1 (EMBL:AP003010) (310 aa) fasta scores: FT E(): 3.2e-44, 45.847% id in 301 aa" FT /protein_id="CAE44866.1" FT /translation="MIAASFPHGVSLIGAPTDIGAGQRGASMGPEALRVAGLVRLLERR FT GLQVTDRGNLQGAPNPWRPPANGYRHLNEVIGWNQLVHDAVSAELRQERLPILLGGDHS FT LAIGSISAVARYCRASGRKLRVLWLDAHADFNTNRLTPTGNVHGMPVACLCGNGPAALT FT SMAGRTPAIEPGWVRQIGIRSVDEGERNLVYDAGLEVYDMRYLDEVGMRAVMEAALAGL FT DPQTHLHVSFDVDFLDPELAPGVGTTVPGGPTYREAQLCMEMIADTGLMRSRDIVELNP FT ALDVRNKTAQVAVDLVESLFGKSTLMRRRPGSA" FT misc_feature complement(546441..547250) FT /note="HMMPfam hit to PF00491, Arginase family" FT misc_feature complement(546528..546593) FT /note="ScanRegExp hit to PS01053, Arginase family signature FT 3. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(546882..546908) FT /note="ScanRegExp hit to PS00148, Arginase family signature FT 2. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(546948..546989) FT /note="ScanRegExp hit to PS00147, Arginase family signature FT 1. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(547280..548521) FT /transl_table=11 FT /locus_tag="BP0539" FT /product="ornithine aminotransferase" FT /EC_number="2.6.1.13" FT /note="Similar to Bacillus subtilis ornithine FT aminotransferase RocD SW:OAT_BACSU (P38021) (401 aa) fasta FT scores: E(): 7.1e-82, 52.083% id in 384 aa, and to Bacillus FT halodurans ornithine aminotransferase RocD or Bh3943 FT TR:Q9K5Z2 (EMBL:AP001520) (400 aa) fasta scores: E(): FT 2.7e-84, 50.249% id in 402 aa" FT /protein_id="CAE44867.1" FT /translation="MNMPAPAATRRDRIEDELGAHNYQPLDVVLARGSGVWLYDTAGRR FT YLDCLSAYSAVNQGHCHPRILAAMVEQAQRLTLTSRAFRHDQLAPLYEDLARLTGAHKV FT LPMNSGAEAVETALKAVRKWGYEARGVPAGQAEIIVCANNFHGRTLGIVGFSTDPDARG FT GYGPFAPGFTVVPFGDFAALQAAVTPRTVAFLVEPIQGEAGVILPPPGYFRQVRKLCSE FT RDIVLILDEIQTGLGRTGAFLAEAHEGIEADVTLIGKALSGGFYPVSAVLSNQAVLGIF FT QPGQHGSTFGGNPLACAVARAALRVLHDEGMIDNAREQGAYFMQRLRALPGPVREVRGR FT GLMLALELEPDAGPARAYCERLMARGMLVKDTHGQTLRLSPPLIVTREQIDWACAQLAH FT VLAHSAPGSSGGPS" FT misc_feature complement(547373..548419) FT /note="HMMPfam hit to PF00202, Aminotransferase class-III" FT misc_feature complement(547730..547843) FT /note="ScanRegExp hit to PS00600, Aminotransferases FT class-III pyridoxal-phosphate attachment site." FT repeat_region 548581..548612 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 548581..549633 FT CDS 548683..549633 FT /transl_table=11 FT /locus_tag="BP0540" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44868.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 548941..549006 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 549064..549597 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(549602..549633) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(549630..550304) FT /transl_table=11 FT /locus_tag="BP0541" FT /product="probable transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1269 TR:Q9I475 (EMBL:AE004556) FT (222 aa) fasta scores: E(): 1.7e-28, 42.347% id in 196 aa, FT and to Rhizobium loti transcriptional regulator Mlr7144 FT TR:Q986Z8 (EMBL:AP003011) (253 aa) fasta scores: E(): FT 2.9e-20, 34.715% id in 193 aa" FT /protein_id="CAE44869.1" FT /translation="MNLVAPMPETAQRKVAGTATERAYGELRKRILEGSLAEGAPIRQD FT EVAADLGISKIPVREALVRLQSEGLVVFTPNAGATVAVLTAADYVEMLDLRLAIECRAL FT ELAVPNMAPSDLAQARRLLDAYSRHENASEWSELNAQFHDCLYAPANRPRLLAMIRSVR FT DHMGKLMRLRVTEAAGHDRSHQEHLKILAACEEGNAARAVALLRKHIEHTQREVQAYFR FT KA" FT misc_feature complement(550062..550238) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT CDS complement(550389..551384) FT /transl_table=11 FT /locus_tag="BP0542" FT /product="putative exported protein" FT /note="Similar to Pseudomonas chlororaphis hypothetical FT 35.8 kDa protein TR:Q9L3W5 (EMBL:AJ271325) (336 aa) fasta FT scores: E(): 1.2e-36, 39.264% id in 326 aa, and to FT Pseudomonas sp hypothetical 35.9 kDa protein in tcbD-tcbE FT intergenic region precursor SW:YTCB_PSESQ (P27103) (336 aa) FT fasta scores: E(): 3.5e-36, 39.144% id in 327 aa" FT /protein_id="CAE44870.1" FT /translation="MKGYARENRRRTLLAAALAGCLLAGGTAHADESGADKRPIRLIVG FT FSAGGYTDVIARILAEQLGHSLNRSVIVENRAGANGAIGATAVARSAKDGATVLLSPPG FT LITNTLISPELSYSIQDFAPVARVTSLPNMLVVSANSKYRSLAELLDGARKADGKLTYG FT SGGVGSSNHLSMALLMRQANVQMLHVPYKGSSLAETDVMAGHVESMFSGAASAIPHVNG FT GRFHALAVSGDKRIGALPDVPTVAEAGVPGYSHGTWLGLFVAAGTPAQAVAGLNQAVNK FT VMADARVQARMTDLGADASQANTVDEFTAFVQSDLAAQKTLIGNASLSGN" FT misc_feature complement(551295..551384) FT /note="Signal peptide predicted for BP0542 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 30 and 31" FT CDS complement(551539..552828) FT /transl_table=11 FT /locus_tag="BP0543" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti probable oxidoreductase FT Mll7103 TR:Q987C9 (EMBL:AP003011) (427 aa) fasta scores: FT E(): 1.1e-46, 39.394% id in 396 aa, and to Pseudomonas FT aeruginosa probable oxidoreductase Pa1028 TR:Q9I4U6 FT (EMBL:AE004535) (428 aa) fasta scores: E(): 7e-40, 37.084% FT id in 391 aa" FT /protein_id="CAE44871.1" FT /translation="MDRPAHRATANPPLRRGGGGAGAMNPDRLLGEPLRLPDSLWAATA FT PAAPALPSLDGRHAADVLIIGAGFTGLSAAIRLCREGRRVIVLDAAEPGWGASGRNNGQ FT VIAGLKQDPEVIETLYPGEAGRRLVRFGSEAPGVVFRLIDEFGIDCAAGNKGWIQPAFT FT RSGLRAVERRCQAWGERGVATRLLQADELARLLGTPRYRLGWLDPRGGHVQPLAYARGL FT ARVALSLGATICGGARVEALRREAGQWLARCQAGEARAPSVIVATGGYADRLVPGLRTS FT IVPVRTAQVATRVLPEAMRREILPQGHVSSDTRQLLTSFRLSPDGRLVMGGAGATAGLE FT HARIVPFLHRAGAELFAHLGKLDWEYHWSGYFAVTTDHLPHVHEPAAGMHVSLGCNGRG FT IAISTALDIELAERVLGAPAESLSVPVSDL" FT CDS 553080..553271 FT /transl_table=11 FT /locus_tag="BP0544" FT /product="putative 4-oxalocrotonate tautomerase" FT /note="Similar to Streptococcus thermophilus putative FT 4-oxalocrotonate tautomerase subunit 4-OT TR:Q9EVV8 FT (EMBL:AJ251800) (61 aa) fasta scores: E(): 0.0013, 38.182% FT id in 55 aa, and to Sphingomonas chungbukensis FT 4-oxalocrotonate isomerase PhnL TR:Q9Z3X0 (EMBL:AF073359) FT (77 aa) fasta scores: E(): 0.0033, 36.508% id in 63 aa" FT /protein_id="CAE44872.1" FT /translation="MPTVRVELSPGRSAEQKTRYMQEVTRLTVEILKCPVESVDVIFIE FT IPPTEWAHGGKFYAQPPA" FT CDS 553378..554697 FT /transl_table=11 FT /locus_tag="BP0545" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0916 TR:Q9I541 (EMBL:AE004525) (440 aa) fasta FT scores: E(): 6.7e-148, 83.524% id in 437 aa, and to FT Escherichia coli hypothetical protein YliG or B0835 or FT Z1061 or Ecs0915 SW:YLIG_ECOLI (P75802) (441 aa) fasta FT scores: E(): 1.2e-131, 73.793% id in 435 aa" FT /protein_id="CAE44873.1" FT /translation="MSSPKVGFVSLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVV FT VNTCGFIDSAKAESLEAIGEAIAENGKVIVTGCMGVEESVIRQVHPSVLAVTGPQQYEE FT VVRAVHGVAPPRQDHNPYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDL FT VSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPVKTRMTELCAA FT LSELGVWTRLHYVYPYPHVDEVIGLMADGKVLPYLDIPFQHASPRILRAMKRPAFEDKT FT LARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYSPVEGAP FT ANTLDNPVPDEVKQERWERFMEHQQAISTARLSTRVGREIDVLIDSVDEEGAVGRSSAD FT APEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA" FT misc_feature 553390..554691 FT /note="HMMPfam hit to PF00919, Uncharacterized protein FT family UPF0004" FT misc_feature 553798..553860 FT /note="ScanRegExp hit to PS01278, Uncharacterized protein FT family UPF0004 signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(554768..555337) FT /transl_table=11 FT /locus_tag="BP0546" FT /product="bacterioferritin" FT /note="Similar to Azotobacter vinelandii bacterioferritin FT Bfr SW:BFR_AZOVI (P22759) (156 aa) fasta scores: E(): FT 3.5e-05, 30.345% id in 145 aa, and to Pseudomonas FT aeruginosa probable bacterioferritin Pa4880 TR:Q9HUT3 FT (EMBL:AE004901) (177 aa) fasta scores: E(): 3.7e-41, FT 71.084% id in 166 aa" FT /protein_id="CAE44874.1" FT /translation="MSSILGVSDMEQSATQPHRAFAVDVKAIRAKVRRDIESGAVTEGY FT RADRATVLRLLNEALATEVVCWLRYKRHAFMARGLSAEPVAAEFAEHAAEEQGHADRLA FT ERIVQLGGEPDLSPVGLLERSHAEYVEGKDLKDMIKENLIAERIAIDSYRQMVDYVGEA FT DPTTRRLLEDILAMEEEHADDLSDLL" FT misc_feature complement(554771..555190) FT /note="HMMPfam hit to PF01334, Bacterioferritin" FT CDS 555518..556105 FT /transl_table=11 FT /locus_tag="BP0547" FT /product="putative lysine decarboxylase" FT /note="Similar to Eikenella corrodens lysine decarboxylase FT TR:Q9Z4R8 (EMBL:U89166) (183 aa) fasta scores: E(): FT 7.3e-25, 43.353% id in 173 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa4923 SW:YDC3_PSEAE FT (P48636) (195 aa) fasta scores: E(): 8.9e-40, 53.684% id in FT 190 aa" FT /protein_id="CAE44875.1" FT /translation="MKIQNICVYCGSNSGRQPEYIEHAQGFARELVKRGLGLVYGGASV FT GIMGAVADTVMAEGGRVIGIIPEALMKKELAHRGLTELHVVQSMHERKTLMAQKADGFV FT ALPGGAGTLEEIFEIWTWAQLGMHQKPCGLLNIAGYYDLLGQFLNHTVDEAFMRPQHRA FT MLAIDHDPAALLDHFASYVAPTVSKWIAPGEH" FT CDS 556112..556714 FT /transl_table=11 FT /locus_tag="BP0548" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44876.1" FT /translation="MTHAMPTQPAAPRTTACLLRDYFRAKDENRPLYMARAFAPDAVLK FT MALRTQAIAFPPESHGLAAIADTLSRKFGQTYDNVYTFYLAHPGEHAVLPEFSCDWIVG FT MTDKASGEVRVGCGSYDWVFQAEPHLVKRLTITIESMLTLPADTAGPVFGWLTALPYPW FT TDAQRVVASAPPIESLAPIMYWLRRDVRRADPTGGMA" FT CDS 556711..557367 FT /transl_table=11 FT /locus_tag="BP0549" FT /product="probable haloacid dehalogenase-like hydrolase" FT /note="Similar to Caulobacter crescentus hydrolase, FT haloacid dehalogenase-like family cc1643 TR:Q9A7S7 FT (EMBL:AE005839) (246 aa) fasta scores: E(): 2.3e-26, FT 42.574% id in 202 aa, and to Agrobacterium radiobacter VirP FT protein TR:O52276 (EMBL:AF242881) (210 aa) fasta scores: FT E(): 1.4e-21, 36.318% id in 201 aa" FT /protein_id="CAE44877.1" FT /translation="MKYRLAAFDFDGTLADTLPWFESVMDGVADKYGFRKASAADKAQL FT RHRSTREIMAFLEVPVWKLPAIMAHVRQLMREIDPAVRMFAGVPAALAQLKAAGLRLAV FT CSSNSLDNVRRVLGPQTGALIDDYECGADLFGKPAKLARLMARHGVERTRCILIGDEMR FT DIDAARKAGVMAGSVAWGYNHVDALRARAPDEIFEQVADLAAVLAPGFPSFPPTP" FT misc_feature 556717..557253 FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS 557364..557990 FT /transl_table=11 FT /locus_tag="BP0550" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc2577 TR:Q9A580 (EMBL:AE005926) (204 aa) fasta FT scores: E(): 4.3e-46, 60.099% id in 203 aa, and to FT Rhizobium loti Mll0539 protein TR:Q98MK8 (EMBL:AP002995) FT (203 aa) fasta scores: E(): 9e-44, 58.000% id in 200 aa" FT /protein_id="CAE44878.1" FT /translation="MSSDPTHRITDLDTLQARYGTPAPNSLTKEVDYLHPHYRAFVEAA FT PFVVLATSGPQGLDASPRGDGPGFVVIEDDRTLLLPDRRGNNRIDSLRNIVADPRVALL FT FLVPGVGETLRVNGQAEISVEPALLARFAVDGKPPRSVLRVRLETVFFQCSRAIVRSAL FT WNPDARVDRASLPSAGQILGALSAGMLDGERYDRELPERVRATVY" FT CDS complement(558013..558951) FT /transl_table=11 FT /gene="fmt" FT /locus_tag="BP0551" FT /product="methionyl-tRNA formyltransferase" FT /EC_number="2.1.2.9" FT /note="Similar to Escherichia coli methionyl-tRNA FT formyltransferase Fmt or B3288 SW:FMT_ECOLI (P23882) (314 FT aa) fasta scores: E(): 2.7e-53, 55.518% id in 299 aa, and FT to Neisseria meningitidis methionyl-tRNA formyltransferase FT Fmt or Nma0163 TR:Q9JWY9 (EMBL:AL162752) (308 aa) fasta FT scores: E(): 2.6e-54, 54.839% id in 310 aa" FT /protein_id="CAE44879.1" FT /translation="MRLVFAGTPEFARIALDALLAAGHDVPLVLTQPDRPAGRGLKLTP FT SPVKQAALAAGIEVAQPRSLRLDGRYPDEAAAARAQLERVAPDVMVVAAYGLILPQWTL FT DLPRLGCLNIHASLLPRWRGAAPIQRAIEAGDAETGVTIMQMDAGLDTGDMLLERAVPI FT GAQQTAAQLHDELARVGGQAIVDALAALAQGGLAPRRQPDAGVTYAAKLYKAEAALDCS FT LPAAVLARRVRAFNPVPGATIRLPGLDDPVKVWRAQALEQAAGGTSGAVLRADAQGIDI FT ATGQGVLRLLELQKAGGKRQPVDVFVRGWQP" FT misc_feature complement(558388..558951) FT /note="HMMPfam hit to PF00551, Formyl transferase" FT CDS complement(559017..559529) FT /transl_table=11 FT /gene="def" FT /gene_synonym="fms" FT /locus_tag="BP0552" FT /product="polypeptide deformylase" FT /EC_number="3.5.1.31" FT /note="Similar to Escherichia coli polypeptide deformylase FT Def or Fms or B3287 SW:DEF_ECOLI (P27251) (168 aa) fasta FT scores: E(): 8.2e-32, 53.846% id in 169 aa, and to FT Neisseria meningitidis polypeptide deformylase Def or FT Nma0164 or Nmb0110 TR:Q9JQN0 (EMBL:AL162752) (167 aa) fasta FT scores: E(): 6.1e-38, 64.848% id in 165 aa. Also similar to FT BP0039, 40.881% identity (44.218% ungapped) in 159 aa FT overlap." FT /protein_id="CAE44880.1" FT /translation="MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGV FT GLAATQVDVHERVVVIDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVER FT AARIRCKALDQQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKA FT EREAERA" FT misc_feature complement(559098..559517) FT /note="HMMPfam hit to PF01327, Polypeptide deformylase" FT CDS complement(559631..560881) FT /transl_table=11 FT /locus_tag="BP0553" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2080 TR:Q9I235 (EMBL:AE004635) (416 aa) fasta FT scores: E(): 6.6e-108, 63.462% id in 416 aa, and to FT Rhizobium loti probable kynureninase Mll0621 TR:Q98MD7 FT (EMBL:AP002995) (415 aa) fasta scores: E(): 1.4e-87, FT 54.348% id in 414 aa" FT /protein_id="CAE44881.1" FT /translation="MTTRQACLEADRRDPLAAFKDEFELPAGLIYLDGNSLGALPRGAA FT ARAAQVIGQEWGQGLIRSWNTAGWFELPARLGNKLAGLIGAGQDEVVMTDSTSLNIFKA FT LAAALRLAQRAAPQRKVIVSERDNFPTDLYMIQGMIDLLRQGYELRLVDAGLSLEQALD FT DDVAVVLLSHVNYRTGAMHDMAAVSRRAHARGALIIWDLAHAAGAVPVALDADGADFAV FT GCTYKYLNGGPGSPAFIWVAPRHRDDFWQPLSGWWGHRQPFEMADTYVPAQGIRRYLCG FT TQPIVSLATAECGLDIALRADIAQVRAKSLALGDRFIALVESRCADHPLTLATPREHAR FT RGSHVSFLHPQGYAVMQALIARGVIGDYREPELLRFGLTPLYLSHADIWDAVEILREVL FT DTRAWDRPQYRERAAVT" FT misc_feature complement(560081..560149) FT /note="ScanRegExp hit to PS00179, Aminoacyl-transfer RNA FT synthetases class-II signature 1." FT CDS 560970..561503 FT /transl_table=11 FT /gene="lrp" FT /gene_synonym="alsB" FT /gene_synonym="livR" FT /gene_synonym="ihb" FT /gene_synonym="oppI" FT /locus_tag="BP0554" FT /product="leucine-responsive regulatory protein" FT /note="Similar to Escherichia coli leucine-responsive FT regulatory protein Lrp or AlsB or LivR or Ihb or Oppi or FT b0889 SW:LRP_ECOLI (P19494) (163 aa) fasta scores: E(): FT 4.8e-16, 38.667% id in 150 aa, and to Rhizobium meliloti FT leucine-responsive regulatory protein Lrp or R01568 or FT Smc01223 SW:LRP_RHIME (P56901) (156 aa) fasta scores: E(): FT 1.6e-18, 43.243% id in 148 aa" FT /protein_id="CAE44882.1" FT /translation="MHEYANQFEQHERKLPMQLDAIDRRILDILQTEGRLSNQDLADRV FT ALSPSACLRRVRALEDGGVIQGYRAVLDPRCLGLDFEAIVHVSLDQSQAGWHEAFVARL FT AGLEEVRQASIVTGSSNYVLQVRTRDLAAFSAFVVDKLNGIAGVREIHSHIVMRKVKDC FT GGVLPVGPAGLAGP" FT misc_feature 561075..561140 FT /note="Predicted helix-turn-helix motif with score 1211 FT (+3.31 SD) at aa 36-57, sequence LSNQDLADRVALSPSACLRRVR" FT misc_feature 561078..561158 FT /note="ScanRegExp hit to PS00519, Bacterial regulatory FT proteins, asnC family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 561096..561407 FT /note="HMMPfam hit to PF01037, AsnC family" FT CDS 561604..562716 FT /transl_table=11 FT /gene="smf" FT /locus_tag="BP0555" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli Smf protein Smf or FT B3285/B3286 SW:SMF_ECOLI (P30852) (374 aa) fasta scores: FT E(): 1.5e-32, 43.974% id in 307 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa0021 pa0021 TR:Q9I7A6 FT (EMBL:AE004441) (362 aa) fasta scores: E(): 5.2e-50, FT 51.639% id in 366 aa" FT /protein_id="CAE44883.1" FT /translation="MPLTHTRAELSAWLRLSQEPGVGPAAAYALLAALGMPEQIYAQGS FT ATLARHVPQDVARQLRAPLSDEAAALIEQTLQWAEQPGHHILTLADPAYPQQLLTIADP FT PILLYVNGDPACLRRPAMAVVGARNATPGGQDNARAFARHLAGQGWCIVSGLALGIDAA FT AHEGALLAGEQGAGTVAVMGTGIDRIYPAAHRDLAHRIVQHGALVSELPLGTGAQRHHF FT PRRNRLVAGLARGVLVVEAARQSGSLITARLAGESGREVFAIPGSIHSPLSRGCHALIR FT QGAKLVETVQDIADELGGAGPAASARTAPPARPAPPHPLLDALGFDPLHLDALQARTGM FT DAASLNAQLLELELDGRVARVEGGRFQRLR" FT misc_feature 561835..562467 FT /note="HMMPfam hit to PF02481, SMF family" FT CDS 562830..563738 FT /transl_table=11 FT /gene="hmgcL" FT /locus_tag="BP0556" FT /product="hydroxymethylglutaryl-CoA lyase" FT /EC_number="4.1.3.4" FT /note="Similar to Gallus gallus hydroxymethylglutaryl-CoA FT lyase HmgcL SW:HMGL_CHICK (P35915) (298 aa) fasta scores: FT E(): 1.8e-60, 54.452% id in 292 aa, and to Pseudomonas FT aeruginosa hydroxymethylglutaryl-CoA lyase Pa2011 TR:Q9I2A0 FT (EMBL:AE004627) (300 aa) fasta scores: E(): 1.5e-63, FT 58.863% id in 299 aa. Also similar to BP3695, 42.657% FT identity in 286 aa overlap" FT /protein_id="CAE44884.1" FT /translation="MSQPSRVKIVEVSPRDGLQNEKEFIATDIKVELVDRLSAAGFQNV FT EAASFVSPKWVPQMADGAEVMARIARRPGTIYSVLTPNMKGLEGALAARADEIVIFGAA FT SEAFSQKNINCSIAESIARFEPVAAAARQAGVRVRGSISCALGCPYQGEVPVEAVVDVA FT RRFLALGCDEIDVADTIGVGTPRRVREVMDAVTRVVDPARVSGHFHDTYGQALANILAA FT LETGIAIFHASASGLGGCPYAKGATGNVATEDVLYMLRGLDIETGIDFDAVVDIGQWIS FT GHLQRKGSSRAGNAVAAKRAA" FT misc_feature 562866..563693 FT /note="HMMPfam hit to PF00682, HMGL-like" FT CDS 563881..564357 FT /transl_table=11 FT /locus_tag="BP0557" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE44885.1" FT /translation="MNNLFAAPTPEEHAALLQEIGPLPLSGQAWPDWVRILAWIVLAVI FT GVQIVTTAIGLPPGQVNPILAGTIILCFLGLALVSWHMQISVTRIDESGLRQTWITRRE FT VAWQDIQFAKFVPLLFSKRLVVFTRHGRPIVFQGGTRDLQVAFAKISLLYRRKR" FT misc_feature join(563977..564045,564055..564123) FT /note="2 probable transmembrane helices predicted for FT BP0557 by TMHMM2.0 at aa 73-95 and 99-121" FT CDS complement(564392..565408) FT /transl_table=11 FT /locus_tag="BP0558" FT /product="amino acid-binding periplasmic protein" FT /note="Similar to Rhizobium leguminosarum general L-amino FT acid-binding periplasmic protein AapJ precursor FT SW:AAPJ_RHILV (Q52812) (341 aa) fasta scores: E(): 3.3e-75, FT 56.932% id in 339 aa, and to Vibrio cholerae amino acid ABC FT transporter, periplasmic amino acid-binding protein vc1362 FT TR:Q9KS97 (EMBL:AE004216) (342 aa) fasta scores: E(): FT 5.2e-79, 58.333% id in 336 aa" FT /protein_id="CAE44886.1" FT /translation="MKIAQGLAAAALLAGMVAGAQGATLDVVKKRGTVVCGTTTGFAGF FT SAPDKQGTWRGLDVDLCRAVAAAVFGDASKIKVVPLNSQQRFTALQSGEVDVLTRNTTV FT TQQRDTALGIIHAGINFYDGQGFMVPKSLGVKSAKELNGATICLQTGTSNENTLADWAR FT ANQVSYKPVVIETFNEVVNAFASGRCDVFSTDASGLASIRISRLEKPDDYVVLPEIISK FT EPLGPFVRQGDDAWLNIVRWSLSAMIEAEEYGVTTANVDEQLKSENPNVRRILGVTPGA FT GANLGLDEKWAYNIIKQVGNYGESFERNVGQGSPLKIQRGLNAQWTQGGLMYALPIR" FT misc_feature complement(564473..565309) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT misc_feature complement(564866..564895) FT /note="ScanRegExp hit to PS00659, Glycosyl hydrolases FT family 5 signature." FT misc_feature complement(565202..565243) FT /note="ScanRegExp hit to PS01039, Bacterial extracellular FT solute-binding proteins, family 3 signature. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(565343..565408) FT /note="Signal peptide predicted for BP0558 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.790 between residues 22 and 23" FT CDS complement(565522..566763) FT /transl_table=11 FT /locus_tag="BP0559" FT /product="probable aminotransferase" FT /note="Similar to Thermococcus profundus multiple substrate FT aminotransferase TR:Q9V2W5 (EMBL:AB027131) (417 aa) fasta FT scores: E(): 2.9e-42, 36.693% id in 387 aa, and to FT Streptomyces coelicolor putative aminotransferase Sce68.04C FT TR:Q9WX27 (EMBL:AL079345) (404 aa) fasta scores: E(): FT 8.4e-59, 48.429% id in 382 aa" FT /protein_id="CAE44887.1" FT /translation="MPLAAPDYAFAAPFQHPPASPIRSLMPYAMRPGTISLAGGYPAQE FT LFDVEGLAAASRQVLERLGACLQYSNIDGQASLRHELARLSAARGLHCDADTELAVTGG FT SQQALALLARVMLQPGDAAVIETPAFPNSVQALRYTGAAVHTVPSGPSGIDLDALDALA FT ARVRPKMVCVVASFSNPCGATISRERRLRLLELAVRHRFLIVEDDPYGELRFAGETVPP FT IAALAEGQARHWAVYISSMSKTMAPALRIGWVVAPAEVRRRVVGAKAADDMACSAWTQE FT MVAQYLADGRYAQHVPRIRAAYGARCDAMAAALQRELGDRVVFRKPEGGMFFWARLNGA FT IDATRLLPYAIEHEVVYVPGKAFYADPAQADPHALRMSFATMNETQIAQGIVRLGRALQ FT ACEANAPVSISLAA" FT misc_feature complement(565564..566745) FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II" FT CDS join(567025..567369,567371..567739) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0560" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 115. The sequence has been checked FT and believed to be correct. Similar to Xylella fastidiosa FT hypothetical protein Xf1717 TR:Q9PCR1 (EMBL:AE003995) (266 FT aa) fasta scores: E(): 4.8e-38, 53.247% id in 231 aa, and FT to Aquifex aeolicus hypothetical protein Aq_274 aq_274 FT SW:Y274_AQUAE (O66631) (228 aa) fasta scores: E(): 2.4e-28, FT 46.875% id in 224 aa. Also similar to BP1320, 57.576% FT identity (58.333% ungapped) in 231 aa overlap." FT /db_xref="PSEUDO:CAE44888.1" FT misc_feature join(567049..567369,567371..567724) FT /note="HMMPfam hit to PF01168, Uncharacterized protein FT family UPF0001" FT variation 567370..567372 FT /note="CAT in pertussis; C(-)T in parapertussis and FT bronchiseptica" FT CDS 567897..568862 FT /transl_table=11 FT /locus_tag="BP0561" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 8.8e-35, 36.957% id in 322 aa, and to Rhizobium meliloti FT conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 8.3e-40, FT 38.907% id in 311 aa" FT /protein_id="CAE44889.1" FT /translation="MHKHAKRLLTLAALTFAAGAAAQSWPSQPLRWIVPYPAGGGTDVV FT ARTVAGSLEKPLGQTIVVENRPGAATIIGATAIAQADPAGYVVGTADSGTLAFNPSLYA FT KLSYDPAKFTYIGGIARFPLMLAVNVNSPYKSVEDVLQAARKEPAKLTAASAGAGSPHH FT LALELFKQRANVDVLHVPYKGAAPAIQDLLGGQVDMMFIDLAAGLPNIKAGKLRVLGTA FT TPERLAVLPDAPTMAEQGVADFTAYAWQGLVGPAGMPEAAVKKLGGELEQSLKSPAVSQ FT KLLDMGVMPMPMTPQDFKAYAEKERAAWADVVKKANIRLE" FT misc_feature 567897..567962 FT /note="Signal peptide predicted for BP0561 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.848 between residues 22 and 23" FT CDS complement(568909..569400) FT /transl_table=11 FT /locus_tag="BP0562" FT /product="putative exported protein" FT /note="Similar to Rhizobium loti Mll3326 protein TR:Q98GH4 FT (EMBL:AP003001) (179 aa) fasta scores: E(): 6.4e-18, FT 41.830% id in 153 aa, and to Neisseria meningitidis FT hypothetical protein Nmb1557 TR:Q9JYJ5 (EMBL:AE002506) (157 FT aa) fasta scores: E(): 1e-15, 40.541% id in 148 aa" FT /protein_id="CAE44890.1" FT /translation="MNIRKWGVGAVLGLSVATTAWAADFKVGQVEVDDLWVRASAPGQA FT NGAGYMEIENDAKAADRLVSVSSPAAERVELHNVVTENGVAQMRQVDGVAVPADGKARL FT APGGYHVMFLKLKAPFAEGGEVPATLKFEQAGEVAVKFKVKPLGHNPGMAGHDHGHMKH FT " FT misc_feature complement(569335..569400) FT /note="Signal peptide predicted for BP0562 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT CDS complement(569496..570395) FT /transl_table=11 FT /locus_tag="BP0563" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Streptomyces coelicolor putative FT LysR-family transcriptional regulator Sc5f8.17C TR:Q9K4K7 FT (EMBL:AL357613) (300 aa) fasta scores: E(): 2.8e-46, FT 46.644% id in 298 aa, and to Agrobacterium tumefaciens FT Agr_c_1691p TR:AAK86733 (EMBL:AE008023) (319 aa) fasta FT scores: E(): 5.4e-44, 43.434% id in 297 aa" FT /protein_id="CAE44891.1" FT /translation="MKLDHGNLRALAAVVREGSFERAAAALSVTPSAVSQRVKALEDRM FT GRLLVQRTVPARATDDGQVLVQLAEQAALLEHDALNRLGVAEDEVPHASIPVAVNHDSL FT ETWFVDAAVRFAARSRATLDLQSEDQDHTAALLRKGAVLGAVTTLADPVQGCRIHALGS FT MRYVACCTPAFHQRYFAQGVSARTLASAPVLVFNRKDALQARYAHRIIGRAAWEPPVWW FT LPSSRAFVQATLGGLGWTMNPLPLVQAELDAGQLVPLRARAWEDVPLYWQHWRVNSQAM FT EALTDAVLAAARALVRRR" FT misc_feature complement(569961..570374) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(570249..570341) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(570279..570344) FT /note="Predicted helix-turn-helix motif with score 1673 FT (+4.89 SD) at aa 18-39, sequence GSFERAAAALSVTPSAVSQRVK" FT CDS 570525..571160 FT /transl_table=11 FT /locus_tag="BP0564" FT /product="probable transporter" FT /note="Similar to Streptomyces coelicolor putative membrane FT transport protein Sc5f8.18 TR:Q9K4K6 (EMBL:AL357613) (204 FT aa) fasta scores: E(): 4.7e-24, 42.714% id in 199 aa, and FT to Pseudomonas aeruginosa probable transporter Pa4365 FT TR:Q9HW36 (EMBL:AE004852) (200 aa) fasta scores: E(): FT 2.7e-22, 41.500% id in 200 aa" FT /protein_id="CAE44892.1" FT /translation="MFTLSVPAYVTAWASGAATGLGLFAVVGAQSAFILRQGLMRAHLL FT SILAVCALIDAVFIFGSVWGLQTLTGWFPWLIQAILWFGVAFLAWYALQSARRALRSDG FT GLEVARQAIPSRGAALLGAIGFSLLNPHFWLDMMVVGSLAHGFADARLAFAAGALTASV FT VWLAVLGVGSRLFAPLFSSPRAWRVLDGLIAAVMALLAARLALGGLAG" FT misc_feature 570525..570611 FT /note="Signal peptide predicted for BP0564 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.835) with cleavage site FT probability 0.262 between residues 29 and 30" FT misc_feature join(570552..570620,570654..570722,570735..570803, FT 570861..570929,570972..571040,571077..571145) FT /note="6 probable transmembrane helices predicted for FT BP0564 by TMHMM2.0 at aa 10-32, 44-66, 71-93, 113-135, FT 150-172 and 185-207" FT misc_feature 570744..571064 FT /note="HMMPfam hit to PF01810, LysE type translocator" FT CDS complement(571157..572107) FT /transl_table=11 FT /locus_tag="BP0565" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44893.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region complement(571157..572209) FT misc_feature complement(571193..571726) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(571784..571849) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(572178..572209) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(572242..573090) FT /transl_table=11 FT /locus_tag="BP0566" FT /product="putative dioxygenase" FT /note="Similar to Rhizobium meliloti hypothetical/unknown FT protein Smc01026 TR:CAC46020 (EMBL:AL591787) (296 aa) fasta FT scores: E(): 0.25, 27.090% id in 299 aa, and to FT Agrobacterium tumefaciens Agr_c_2627p TR:AAK87216 FT (EMBL:AE008068) (292 aa) fasta scores: E(): 0.21, 27.852% FT id in 298 aa" FT /protein_id="CAE44894.1" FT /translation="MTARVGRVDHPVVAVHDLDRTSQQYRKLGFVVPPSGKHQEWGTEN FT LCIMFPGDYLEIRGIGDPNKFLAGVDKFLAKGEGLYSVAFNAASAQESYQAGLAAGLEI FT EPPRHLNRKLVLEDRTLDLHFETVMLGHDLYPGLTHANLCQHLTADTLRQPGWTDHPNG FT VVAFGRLVGMVSDFDAAAAAYTRLIGAENVTRGDDHILLDFGAGADIELIGPAEAQRRG FT DAQPQLGDAYLASATLLVKDAAATAALFEANGVRFTRQPGGELKVDPADACGAHLYFKQ FT A" FT misc_feature complement(572245..572574) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS 573224..574000 FT /transl_table=11 FT /locus_tag="BP0567" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3505 TR:Q9HYA4 (EMBL:AE004771) (267 aa) fasta FT scores: E(): 7.8e-19, 34.409% id in 279 aa, and to FT Methanothermobacter thermautotrophicus conserved protein FT Mth973 TR:O27054 (EMBL:AE000871) (257 aa) fasta scores: FT E(): 2.9e-18, 37.647% id in 255 aa. Also similar to BP1922, FT 41.036% identity in 251 aa overlap." FT /protein_id="CAE44895.1" FT /translation="MNTPLRVGIVGCGVLANAMAGHLARQPRPVEIVGCLVRDPGRARG FT ALPCHGSWEALLAQRPDVVVECAGQAALAQYAQAILAAGVDLVPASVGALADDALRGAL FT LEAAAAAGARIRIPSGAMVGIDGLAAARHVGVAEVLYRGTMPPVALQRYVSGPLPERGL FT AFAGSAREAVARFPKNVNLTGTIALAGIGFDRTRVEMLIDPDATANVHELLARGEFGDF FT HARVSGLRISESSPSSRIVAGSLAQAALGSGFLALS" FT misc_feature 573236..573970 FT /note="HMMPfam hit to PF01958, Domain of unknown function FT DUF108" FT CDS complement(574046..574675) FT /transl_table=11 FT /locus_tag="BP0568" FT /product="putative amino acid efflux protein" FT /note="Similar to Escherichia coli homoserine/homoserine FT lactone efflux protein RhtB or B3824 SW:RHTB_ECOLI (P27847) FT (206 aa) fasta scores: E(): 1.6e-14, 31.100% id in 209 aa, FT and to Rhizobium meliloti putative amino acid efflux FT transmembrane protein Smc02981 TR:CAC47452 (EMBL:AL591792) FT (211 aa) fasta scores: E(): 1.3e-40, 58.852% id in 209 aa" FT /protein_id="CAE44896.1" FT /translation="MTLATLALFVLASGLIIVTPGPTVLLALSNGSRHGVRRACWGMAG FT AVLADLVLVAAVAGGLGMLLAASEPAFQALKWIGAGYLAYLGWRLLRSDAALVLPAPAA FT GGGDSGAGALFSRSFLVALTNPKALLFMSAFLPQFIDPAAALAPQYGALALVLAVLNLA FT AMLGYAALGARLVRALRTGGLRWINRLCGGMLVVLAGTVALYRRAG" FT misc_feature complement(join(574061..574117,574157..574222, FT 574268..574333,574478..574543,574589..574654)) FT /note="5 probable transmembrane helices predicted for FT BP0568 by TMHMM2.0 at aa 7-29, 44-66, 114-136, 151-173 and FT 186-205" FT misc_feature complement(574148..574471) FT /note="HMMPfam hit to PF01810, LysE type translocator" FT misc_feature complement(574595..574675) FT /note="Signal peptide predicted for BP0568 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.963) with cleavage site FT probability 0.729 between residues 27 and 28" FT CDS 574783..576117 FT /transl_table=11 FT /locus_tag="BP0569" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli Sun protein Sun or Fmu FT or Fmv or Rsmb or B3289 SW:SUN_ECOLI (P36929) (429 aa) FT fasta scores: E(): 7.1e-43, 36.406% id in 434 aa, and to FT Neisseria meningitidis Sun homolog Nma0162 TR:Q9JWZ0 FT (EMBL:AL162752) (419 aa) fasta scores: E(): 3.8e-54, FT 44.651% id in 430 aa" FT /protein_id="CAE44897.1" FT /translation="MPSSVDSSVLAPPLSAVLLGAAAAVQAVRKGRSLTDALAETPPAL FT RPAVQAISFHAMRQLGWADAVAETLVRRSPGPLFDALLRVALSLLRPAPGAAAQPGAPQ FT YAPHTVVDQAVTAAAGQRKLAAYKGLLNASLRRFLREREALQDSVAERPAARWNHPRWW FT VELLERAYPDQWRGILAGANVPAPLTLRVNRRRATVEQARQALAQAGVAAAPVGDAGLV FT LAEPRPVPQLPGYGAGWWSVQDAGAQLAAPLLAPADGMRVLDACAAPGGKTAHLLELAD FT IDLLALDADVQRLERVDQNLERLGLRTPRVRLAAADASDLDAWWDGRPFDAVLADVPCT FT ASGIVRRHPDIRWLRRAKDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQ FT AEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKRT" FT misc_feature 575314..576105 FT /note="HMMPfam hit to PF01189, NOL1/NOP2/sun family" FT misc_feature 575770..575805 FT /note="ScanRegExp hit to PS01153, NOL1/NOP2/sun family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 576136..576747 FT /transl_table=11 FT /locus_tag="BP0570" FT /product="putative exported protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma0161 TR:Q9JWZ1 (EMBL:AL162752) (199 aa) fasta FT scores: E(): 3.5e-12, 31.088% id in 193 aa, and to FT Neisseria meningitidis hypothetical protein Nmb0113 FT TR:Q9K1K4 (EMBL:AE002370) (180 aa) fasta scores: E(): FT 5.1e-11, 32.278% id in 158 aa" FT /protein_id="CAE44898.1" FT /translation="MLLRICRMSMILRLFVALLLVFCSFSPITSGLAHAADPHVQRIEP FT LVRDGKLELSADVHFELNDQLRDAAQRGVPLYFTADLQITRSRWWWFDHTLVDKSITWR FT IAYNALTRQWRAGAGELSLPVASLDDAMDLVRHIRNWQVADASEFDPGVRYGGQLRVRL FT DTSQLARPFQVNALNSSSWSPATPWAEFSFALAEPARDPS" FT misc_feature 576136..576240 FT /note="Signal peptide predicted for BP0570 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 35 and 36" FT CDS 576744..579053 FT /transl_table=11 FT /locus_tag="BP0571" FT /product="putative two-component sensor kinase" FT /note="Similar to Azorhizobium caulinodans nitrogen FT regulation protein NtrY SW:NTRY_AZOCA (Q04850) (771 aa) FT fasta scores: E(): 8.8e-14, 29.107% id in 773 aa, and to FT Neisseria meningitidis nitrogen regulation protein NtrY, FT putative Nmb0114 TR:Q9K1K3 (EMBL:AE002370) (706 aa) fasta FT scores: E(): 6.2e-41, 37.748% id in 755 aa" FT /protein_id="CAE44899.1" FT /translation="MRMFLRLALVVGGVSGLALLGLLAWSTGNASRFARYYDTLLILNG FT IFAFALFVWVVALTVRLARQIRRRQFGARLTARFALAFALIGVVPGALIYTLSVQFMSR FT SIESWFNVRVDSALESGLNLGRAALDSQLADMDVRARAMAAELNNMSDNDIPLALTRLR FT EANGAQEATVFTGSGRILAFSTNTYGQLLPPSLPATLLNQLRLARGYSAAEADDPAIPG FT AEGGLHLRVVIPLSAPARFDGILGGSAEPRWLQLMHAVPDQIAHNANRVQQGFRDYQEL FT ALSRLGLRKLYGITLTLALLLAVFAAIAVALSLSKRLVRPLLRLAGGTQAVGVGDFRPL FT PEPPERDEVGQLTRSFNAMTRQLEEARQMVESNRRQLERSNVYLESVLSNLSSGVIAFD FT EGFRVTTVNQGAQTILQADLRSVIGRPLETVDGMLEFAQVVRQAFAAHAAVGSERLHWQ FT QQFEITPGLDETGGQPVTLLARGTHLRVDGRGNGYLVVFDDITEVISANRTVAWGEVAR FT RLAHEIKNPLTPIQLSAERLAMKLADRLQPADAQMLIRSTNTIVNQVGSLKQMVDDFRE FT YARTPPAVMQRIDLNALVADVLSLYGWDPGDGGGRGAARVLNLDVELAPGLPDIEGDPT FT QLRQVIHNLLSNARDAVAEQGGEGRVKVTTQIVQSEQPDGGQQRAVRFTVADTGPGFPP FT QVMQRAFEPYVTTKAHGTGLGLAIVRKIIEEHGGRIDLANRKEGGARISILLTRLALPS FT DTMDATAQKKDNAATQ" FT misc_feature 576744..576833 FT /note="Signal peptide predicted for BP0571 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.360 between residues 30 and 31" FT misc_feature join(576762..576821,576849..576917,576978..577046, FT 577617..577685) FT /note="4 probable transmembrane helices predicted for FT BP0571 by TMHMM2.0 at aa 7-26, 36-58, 79-101 and 292-314" FT misc_feature 577629..577838 FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature 578274..578492 FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT misc_feature 578637..578993 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT CDS 579064..579753 FT /transl_table=11 FT /locus_tag="BP0572" FT /product="putative two-component response regulator" FT /note="Similar to Salmonella typhimurium transcriptional FT regulatory protein HydG SW:HYDG_SALTY (P25852) (441 aa) FT fasta scores: E(): 7.1e-09, 35.849% id in 159 aa, and to FT Neisseria meningitidis putative two-component FT trancriptional regulator Nma0159 TR:Q9JWZ3 (EMBL:AL162752) FT (425 aa) fasta scores: E(): 1.2e-25, 53.939% id in 165 aa" FT /protein_id="CAE44900.1" FT /translation="MARILVVDDEVGIRELLSEILYDEGHTVELAENAAQARAARLRMR FT PDLVLLDIWMPDTDGVSLLKEWASQGLLDMPVIMMSGHATIDTAVEATRIGAMDFLEKP FT ITLQRLLKTIEAGLARVRAPRAAPPLAHAAAAPVAVALEDELDPPQPFQAPVEAPAASN FT GQLGSISLDQPLREARDEFERIYFEYHLVRENHSMTRVSERTGLERTHLYRKLKQLGIE FT SARKRGT" FT misc_feature 579067..579405 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT misc_feature 579649..579714 FT /note="Predicted helix-turn-helix motif with score 1397 FT (+3.94 SD) at aa 196-217, sequence HSMTRVSERTGLERTHLYRKLK" FT CDS 579750..581129 FT /transl_table=11 FT /gene="trkA" FT /locus_tag="BP0573" FT /product="Trk system potassium uptake protein" FT /note="Similar to Escherichia coli Trk system potassium FT uptake protein TrkA or B3290 or Z4660 or Ecs4155 FT SW:TRKA_ECOLI (P23868) (458 aa) fasta scores: E(): 6.9e-78, FT 48.478% id in 460 aa, and to Salmonella typhimurium Trk FT system potassium uptake protein TrkA or SapG SW:TRKA_SALTY FT (P39445) (458 aa) fasta scores: E(): 1.8e-78, 48.913% id in FT 460 aa" FT /protein_id="CAE44901.1" FT /translation="MKILIMGAGRVGTSVAENLVSEQNDITVIDTDVGQLRYLQDRFDL FT RVVQGDGIQVSVLESAGADDTDLFIACAASDAANLVACKIAREVFNVPRRIARIRMPEF FT ADHPELMSDEGFAIDALISPERSVTTYLHSLIEFPEALQVVEFAGGRVSVITVRVGHGS FT PMAHHPVDELREVWPDVTARIVDVLRDGRPLHAGTGTVVAPGDEVVLAVDTRHARRAVR FT QLREAEKTVHRVMIAGGGNIGLRLARQLAEEGYSVRIIEHDAKRCEYLAAELPDNVLVL FT HGNGTDEALLERENIEDMDTWLALTSDDEDNIMSSLLAKRLGARKVIALINRQAYGELM FT QGSHIDVAVSPSQATMSELLRHVRRGDVVAVHRLRQGVAEALEAVAHGDRSNSRVVGRA FT VGKIGLPKGASIGVLVRGDEIIVPDADTEIQSDDHVIVFVPSRRQMPRVEKLFQVSASF FT F" FT misc_feature 579753..580121 FT /note="HMMPfam hit to PF02254, KTN NAD-binding domain" FT misc_feature 580164..580433 FT /note="HMMPfam hit to PF02080, Potassium channel" FT misc_feature 580446..580802 FT /note="HMMPfam hit to PF02254, KTN NAD-binding domain" FT misc_feature 580845..581117 FT /note="HMMPfam hit to PF02080, Potassium channel" FT CDS 581178..582647 FT /transl_table=11 FT /gene="trkH" FT /locus_tag="BP0574" FT /product="Trk system potassium uptake protein" FT /note="Similar to Escherichia coli Trk system potassium FT uptake protein TrkH or B3849 or Z5371 or Ecs4777 FT SW:TRKH_ECOLI (P21166) (483 aa) fasta scores: E(): 4e-74, FT 42.798% id in 486 aa, and to Salmonella typhimurium Trk FT system potassium uptake protein TrkH or Stmd1.3 FT SW:TRKH_SALTY (Q9L6L2) (483 aa) fasta scores: E(): 2e-74, FT 43.004% id in 486 aa" FT /protein_id="CAE44902.1" FT /translation="MKRLLATFYVLGLTMVVFALTMVIPLAVAYIGQDAGFTAFLEGFL FT LALGIGAGTWLATRRGRSELHARDGFLLVSTVWAALPALAAIPLLLYYDDVGIPLSFTD FT AYFEAMSGLTTTGATVLSGLDALPASINLWRATLIWIGGMGILVLAVAILPLLGVGGHQ FT VVRAETPGPMKDERLTPRIASTAKALYAVYFGFSMVCLLAYRAVGLSWFDAWCHMATTM FT GLGGFSTYDDGFAHFDSLSVELVAIVFMTISGINFATHFNALRQRNWRAYVVCPQTIPY FT LTVMLGAGLVISVFLYIKGVYGDPWEALRYGMFNTISVATTTGYANVDYASWPLFAPLT FT MLLLSAFVTSAGSTGGGIKMIRIILLVKQARNELVTMLHPHAVSPVRIGSRVVDQRVMA FT SVLAFMLVYGLSVGVLSSLLLLSGLDLITAFSAVMAMINNTGPGLGPVGPMGNFSVLND FT FQTWVCTFAMLIGRLELLTVLVLFTPLFWRK" FT misc_feature 581178..581264 FT /note="Signal peptide predicted for BP0574 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.611 between residues 29 and 30" FT misc_feature join(581202..581270,581280..581348,581385..581453, FT 581586..581654,581745..581813,581892..581960, FT 582018..582086,582183..582251,582372..582440, FT 582570..582638) FT /note="10 probable transmembrane helices predicted for FT BP0574 by TMHMM2.0 at aa 9-31, 35-57, 70-92, 137-159, FT 190-212, 239-261, 281-303, 336-358, 399-421 and 465-487" FT misc_feature 581367..582638 FT /note="HMMPfam hit to PF02386, Sodium transport protein" FT CDS 582793..583260 FT /transl_table=11 FT /locus_tag="BP0575" FT /product="probable MarR-family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT regulator protein SlyA TR:Q9F8R8 (EMBL:AF242208) (135 aa) FT fasta scores: E(): 2.1e-06, 29.630% id in 135 aa, and to FT Streptomyces coelicolor putative transcriptional regulator FT Sc4c6.14 TR:Q9XAM6 (EMBL:AL079355) (154 aa) fasta scores: FT E(): 8.9e-15, 40.000% id in 135 aa" FT /protein_id="CAE44903.1" FT /translation="MFDPAKQVLWSRPGYLVRRLNQIHYALFYEECKTQNVTPVQYGVL FT TALSLSPWLDQTAIGMELGLDRTTTADVIKRLQERGLVERRVNPNDKRSRQAVITQEGL FT RIMGLLQGGMARAQQRLLEPLSPCNREIFMKLLSTLVDANNQYSRTALKAM" FT misc_feature 582901..583212 FT /note="HMMPfam hit to PF01047, MarR family" FT CDS complement(583268..584263) FT /transl_table=11 FT /locus_tag="BP0576" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4618 TR:Q9HVH3 (EMBL:AE004876) (323 aa) fasta FT scores: E(): 7.3e-44, 42.271% id in 317 aa. Also similar to FT BP2128, 50.893% identity (53.271% ungapped) in 336 aa FT overlap." FT /protein_id="CAE44904.1" FT /translation="MNALDLDVLQHARDWLASGRRVHLVTVVQTWGSAPRQAGAMLAVR FT DDGQVVGSVSGGCIEDDLIARARAGTLPERAERLTYGVTRDEATRFGLPCGGTLRLVAE FT PLAPRDAWLDEVLQAIAEHRLVRRTIDLHTGAAALEAAAPAEGPDFDGRMFRAVYGPHW FT RLLIIGANQTAQVLADIAATLDFQVIVCDPREEFHAAWHAPHATLVATMPDDIVLEIGT FT DERTAIVALTHDPKLDDMVLLEALKSRAFYVGALGSRANQEKRRERLRLFDLGDEDIAR FT LRGPVGLPIASRTPAEIAVAVAAELVWVRNTLGDREPSGAPLPAALAPAR" FT misc_feature complement(583316..584227) FT /note="HMMPfam hit to PF02625, Uncharacterized BCR, FT COG1975" FT CDS 584397..584996 FT /transl_table=11 FT /locus_tag="BP0577" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc0019 TR:Q9AC47 (EMBL:AE005676) (210 aa) fasta FT scores: E(): 7e-13, 41.176% id in 204 aa, and to FT Agrobacterium tumefaciens Agr_pat_742p TR:AAK90876 FT (EMBL:AE007918) (230 aa) fasta scores: E(): 1.5e-09, FT 37.056% id in 197 aa" FT /protein_id="CAE44905.1" FT /translation="MGILLAGGQGRRFAAASGGQDKLLARLADGTAVAVRAAAALREAT FT DAVVAMVRPESAALAALLRGQGCHVLESEQASEGMGASLAAAARFLLAGPVPNMPQRAD FT VCLVALADMPWVRRDTLSAVRAAACADGITVPVHQGRRGHPVAFGRSLWGELAALRGDV FT GARELLRRHRVAAVAVDDPGVAADVDTPGDLAGDRA" FT CDS 585320..586282 FT /transl_table=11 FT /locus_tag="BP0578" FT /product="conserved hypothetical protein" FT /note="Similar to Synechocystis sp hypothetical 38.3 kDa FT protein Slr0619 TR:Q55861 (EMBL:D64004) (348 aa) fasta FT scores: E(): 1e-44, 47.569% id in 288 aa, and to FT Agrobacterium tumefaciens Agr_c_4595p TR:AAK88260 FT (EMBL:AE008165) (327 aa) fasta scores: E(): 3.2e-35, FT 45.260% id in 327 aa" FT /protein_id="CAE44906.1" FT /translation="MTKVRKIAFEEHFTAVGFGDYSKAFVQHLDPGFAAELGARLTDFG FT AGRLAEMDAAGIDYAILSQTGPGVQGEPDAAVALRRARENNDFLAERIARHPDRFGGFA FT TLPMHDPKTAAAELTRAVRELGFKGSLVNGHTNGVYYDDPAYDAFWEQMQELDVPLYLH FT PFDAYVLPHAYKGHPELAGATWGWGVETGTHALRLLFGGVFDRFPKLKIILGHMGEGLP FT FQRWRFDSRFAAYPYGVKLQRAPSEYIGSNILITTSGVCSHPTLVGAIAEMGAEAVMFS FT IDYPYESTALAVEFIESAPLDAATRDLVCYGNAARLFKL" FT CDS 586308..587060 FT /transl_table=11 FT /gene="maiA" FT /locus_tag="BP0579" FT /product="maleate cis-trans isomerase" FT /note="Similar to Serratia marcescens maleate cis-trans FT isomerase MaiA TR:Q9KWI0 (EMBL:AB035810) (250 aa) fasta FT scores: E(): 3.6e-69, 78.800% id in 250 aa, and to Bacillus FT stearothermophilus maleate cis-trans isomerase MaiA FT TR:Q9WX57 (EMBL:AB015134) (251 aa) fasta scores: E(): FT 4.3e-57, 65.339% id in 251 aa. Identical to BP1955, 99.600% FT identity (99.600% ungapped) in 250 aa overlap." FT /protein_id="CAE44907.1" FT /translation="MQKTYRIGQIVPSSNTTMETEIPAMLLARQQIRGERFTFHSSRMR FT MKKVVKEELAAMDAESDRCAVELSDARVDVLGYACLVAIMAMGRGYHRQSQARLTAHTA FT ANGGEAPVITSAGALVDALKVMGARKIAVVAPYMKPLTELVVDYIGNEGYEVVDYRALE FT IADNLEVGRHDAGRLPEIVAGLDYREADVIVLSACVQMPSLGAIAKVEAQTGKPVVTAA FT VATTYAMLKALGLEAVVPGAGALLSGAY" FT CDS join(587080..587730,587732..587899) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0580" FT /product="probable hydrolase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 217. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa esterase Pa2949 TR:Q9KJG6 (EMBL:AF170828) (315 FT aa) fasta scores: E(): 6.2e-07, 27.437% id in 277 aa, and FT to Coccidioides immitis hypothetical alpha/beta hydrolase FT TR:Q9P418 (EMBL:AF284472) (201 aa) fasta scores: E(): FT 2.7e-41, 56.122% id in 196 aa. Identical to BP1956, 99.634% FT identity (100.000% ungapped) in 273 aa overlap." FT /db_xref="PSEUDO:CAE44908.1" FT misc_feature join(587245..587733,587732..587875) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT variation 587731..587732 FT /note="G in pertussis; G(AG) in parapertussis and FT bronchiseptica" FT CDS 587927..588958 FT /transl_table=11 FT /locus_tag="BP0581" FT /product="conserved hypothetical protein" FT /note="Similar to Pyrococcus horikoshii hypothetical 34.8 FT kDa protein Ph1048 TR:O58749 (EMBL:AP000004) (320 aa) fasta FT scores: E(): 1.5e-06, 25.429% id in 350 aa. Identical to FT BP1957, 100.000% identity (100.000% ungapped) in 343 aa FT overlap." FT /protein_id="CAE44909.1" FT /translation="MPVSDYEMIRAWTQVLRLSRLQAGQTVTVLTSAATHPQTLGTALV FT AAQSLGAVVNRLDLPPVNGEKALSRDALAYLGTTPLTGNKAAIAMLKASDLVLDLMTLL FT FSPEQHEILQGGTRILLAVEPPEVLARLVPTEGDRQRVKAAAARIAGAREMTVESEAGT FT RLRCGLGEFPAISEYGYVDEPGRWDHWPSGFALTWPDEGSANGTIVIDRGDILLPQKSY FT VSEPIVLTVENGYATRIEGGLDAEMLREYVATFKDPQAYAISHIGWGLQPRASWTTLGL FT YDREATIGMDARAYEGNFLFSLGPNNEAGGSRTTACHIDIPLRRCTVRLDGREVVREGK FT VLD" FT CDS 588974..589591 FT /transl_table=11 FT /locus_tag="BP0582" FT /product="putative isochorismatase" FT /note="Similar to Arthrobacter sp N-carbamoylsarcosine FT amidase SW:CSH_ARTSP (P32400) (264 aa) fasta scores: E(): FT 2e-14, 32.673% id in 202 aa, and to Thermoplasma volcanium FT isochorismatase Tvg0787823 TR:Q97AM6 (EMBL:AP000993) (175 FT aa) fasta scores: E(): 6.1e-07, 28.409% id in 176 aa. FT Identical to BP1958, 100.000% identity (100.000% ungapped) FT in 205 aa overlap." FT /protein_id="CAE44910.1" FT /translation="MSNDLGSYERQGFGAALPLKAPYGLLIVDFVNGFADPAQFGGGNI FT AAAIETTRTVLAAARERGWAVAHSRIVYADDDADGNIFSIKVPGMLTLKEHAPASAIVP FT QLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMSAGF FT RPLVLSDCVGDRALGPHEANLFDMRQKYAAVMTHDEALAKTK" FT misc_feature 589043..589522 FT /note="HMMPfam hit to PF00857, Isochorismatase family" FT CDS complement(589662..590177) FT /transl_table=11 FT /locus_tag="BP0583" FT /product="probable ring hydroxylating beta subunit" FT /note="Similar to Pseudomonas sp salicylate-5-hydroxylase FT small oxygenase component NagH TR:O52380 (EMBL:AF036940) FT (161 aa) fasta scores: E(): 1.4e-17, 36.364% id in 154 aa, FT and to Burkholderia sp RasC ferredoxin oxidoreductase FT TR:Q9Z5Q7 (EMBL:U62430) (161 aa) fasta scores: E(): FT 8.8e-18, 36.364% id in 154 aa" FT /protein_id="CAE44911.1" FT /translation="MSQTFFPPRTIDPARAIALKLEVEEFNADYCAALDGGQVESWPDF FT FTETALYRVTARENAELNLPVGLVYAEGRDMMHDRAVAISRTQMFAPRYMLHMVSNTRV FT TSETPDGEIAASSTFLLMQTLVEGPTTLHLAGSYHDRFVRENGTLKLQERQVIYDTAIL FT ANDLVYPV" FT misc_feature complement(589680..590078) FT /note="HMMPfam hit to PF00866, Ring hydroxylating beta FT subunit" FT CDS complement(590192..591481) FT /transl_table=11 FT /locus_tag="BP0584" FT /product="probable Ring hydroxylating alpha subunit" FT /note="Similar to Pseudomonas sp salicylate-5-hydroxylase FT large oxygenase component NagG TR:O52379 (EMBL:AF036940) FT (423 aa) fasta scores: E(): 4.2e-80, 46.731% id in 413 aa, FT and to Pseudomonas aeruginosa O-halobenzoate dioxygenase FT alpha subunit OhbB TR:O87618 (EMBL:AF087482) (421 aa) fasta FT scores: E(): 2.5e-76, 46.229% id in 411 aa" FT /protein_id="CAE44912.1" FT /translation="MYQSQTVIGRTLAAKDAPLSECAWPQYALHFIPDWVYTNNAVYEQ FT ELEKIFRGKTWNFVALEAELPNAGDYKRSYVGAKPVVVSRAEDGSINVFENRCAHRGAE FT FCRHNQGNAKEFVCPYHQWSYDLKGNLQGIPFKRGVNREGGMPKDFKNDEHGLRRLHVT FT TRNGVVFASYSSEVEPIAEYLTPEILADFDAVFPGKKLKILGYYRNELPCNWKMYHENL FT KDPYHATLLHSFLVVFGLLVAGNKSAMLVDSVHGRHGTMASAKSEDKYATVSEENKKEM FT RSFHDGLRLRDDRFLEFIKEFDSPWSVTMQTIWPNLIVQREMNTLGVRHIIPNGPDSMI FT MQWTMFGYEDDTEEMQRHRLRQGNLMGPAGFLGLEDNEAMKFVQEGVRRASTDVNVIKL FT ESGKQGTSNTLISEAAIRSMYSYYREVMGF" FT misc_feature complement(590198..590944) FT /note="HMMPfam hit to PF00848, Ring hydroxylating alpha FT subunit (catalytic domain)" FT misc_feature complement(591074..591256) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain" FT misc_feature complement(591119..591190) FT /note="ScanRegExp hit to PS00570, Bacterial ring FT hydroxylating dioxygenases alpha-subunit signature." FT CDS complement(591517..592779) FT /transl_table=11 FT /locus_tag="BP0585" FT /product="putative ferredoxin reductase" FT /note="Similar to Pseudomonas sp ferredoxin reductase BphA4 FT TR:Q52437 (EMBL:D16831) (408 aa) fasta scores: E(): FT 5.8e-45, 40.244% id in 410 aa, and to Rhizobium meliloti FT MocF TR:Q9R9P5 (EMBL:AF076471) (408 aa) fasta scores: E(): FT 2.2e-49, 43.826% id in 413 aa" FT /protein_id="CAE44913.1" FT /translation="MDEIQSIVIVGAGQAGAVAAASLRQLGYRGGLTLVGQEAHPPYER FT PPLSKAVLQGTATHAEAAVHPAGFYAENDIALLTETAVAALDPAARTVRLADGRTLPYD FT RCLLATGGHARELPALPRGRAGVHYIRTLDDALDLRAALRPGVRAAVIGGGFLGLEVAS FT TARELGAKVTVIENGSRLLERALPAIVSDWLAERVRASGVDLRLGGAIAAIGDGPPYAI FT TLADGTQVNADLIVVSIGLAPEVTLARQAGLPLDDNGGICVDSQARTADPQVYAAGDCA FT SQPRACLGTAARFESWQNANEQARAAAAAMLGLAPAAEPYPWFWTDQYGCNIQILGLPQ FT PGLRYVCRPQTDPQAAPRVLWIGLRDGVPCHGIAVNAGGDLRQLRVLFERGIPVDPHRL FT ADPAEALKPLVKAWQAAIAVA" FT misc_feature complement(591940..592761) FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase" FT CDS complement(592782..593093) FT /transl_table=11 FT /locus_tag="BP0586" FT /product="ferredoxin" FT /note="Similar to Pseudomonas putida naphthalene FT 1,2-dioxygenase system ferredoxin component NdoA or NahaB FT or DoxA or NdoC1 SW:NDOA_PSEPU (P23082) (103 aa) fasta FT scores: E(): 1.4e-20, 55.882% id in 102 aa, and to FT Pseudomonas sp ferredoxin NagaB or PahaB TR:O52381 FT (EMBL:AF036940) (104 aa) fasta scores: E(): 1.9e-19, FT 49.505% id in 101 aa" FT /protein_id="CAE44914.1" FT /translation="MNWIKIATTDQLEDDEVMPVTAGEAKLALYRSEGEYFASDNVCTH FT AYALLSDGYLEDGCIECPLHQARFDIKTGKAMCAPATADIRIYPLKIENDDIYVDLQA" FT misc_feature complement(592851..593033) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain" FT CDS 593563..594666 FT /transl_table=11 FT /locus_tag="BP0589" FT /product="putative exported protein" FT /note="Similar to Rhodobacter sphaeroides periplasmic FT mannitol-binding protein SmoM TR:O30835 (EMBL:AF018073) FT (365 aa) fasta scores: E(): 2.1e-68, 47.411% id in 367 aa, FT and to Agrobacterium tumefaciens Agr_pat_385p TR:AAK90643 FT (EMBL:AE007896) (370 aa) fasta scores: E(): 3.8e-69, FT 48.189% id in 359 aa. Also similar to BP2963 (55.249% FT identity in 362 aa overlap), BP1487 (54.521% identity in FT 365 aa overlap), and to BP2661 (48.916% identity in 323 aa FT overlap)" FT /protein_id="CAE44915.1" FT /translation="MQRRRFLAQAAGAAGAGLAAVGMPAMAQANPTVRWRMSTSWPKSL FT DTIYGSADELCKRVGQLTDGKFEIRAFPGGELVPSAQNMDAVSNGTVECNHVLSTMYIG FT KNTALTFDTGLSFGLNARQHNAWIHYGGGLQQLRELYKKYNIVNHVCGNVGVQMDGWYR FT KEIKSTADLNGLNMRIGGIGGMVLSKLGVVPQQIPLGDIYPALEKGTIDAAEWIGPYDD FT EKLGFNKVAPYYYSPGWFEGSASITSMVNDKAWEALPPAYQAAFEAACGEQSMRMLANY FT DARNPLALRKLIAGGAKVSFFPKEVMDAVYKASQQLWTELSEKNPDFKAIYPGWKKFQE FT DEAGWFRVAENALDNYTFAAVARAQAK" FT misc_feature 593563..593643 FT /note="Signal peptide predicted for BP0589 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.666 between residues 27 and 28" FT CDS 594696..597068 FT /transl_table=11 FT /locus_tag="BP0590" FT /product="oxidoreductase, large chain" FT /note="Similar to Pseudomonas putida quinoline FT 2-oxidoreductase, large chain QorL TR:P72224 (EMBL:X98131) FT (788 aa) fasta scores: E(): 1.2e-91, 36.882% id in 789 aa, FT and to Mycobacterium tuberculosis CDC1551 carbon monoxide FT dehydrogenase, large subunit, putative Mt0388 TR:AAK44610 FT (EMBL:AE006943) (799 aa) fasta scores: E(): 3.4e-84, FT 36.181% id in 796 aa" FT /protein_id="CAE44916.1" FT /translation="MTTEHTGAEVGAGSRQGVGARVPRKEDARHLHGKGNFVADMAMPG FT LCEVAFLRSPLAHARITDVRVPESVRDKVVLRSMMGDARDIAADSTLPTYQPSVQPPLA FT SGKVRFVGEPVAMTFAPTRAEAEDHAELVEVDYDDLPVYADVAGAQQATSDLVHEHWRD FT NVFVTLNADRDFDEHAARAEVVVRRKIDLARQCMVPMEGKAVLAYWDHQADQLVVISAT FT QVPHMIRSVLAQCLDLEQGRVRVVSPDVGGAFGYKCVLQQEELCVAWLAKTYKRPFRFI FT EDRREHLTAGANSREHHYEMTAYADKRGKLLALDARITIDGGAYSVWPFTIGLEPDQAV FT GNLPGPYGFRGYRCETRCVATNKPGFVPYRGRTGVCFAIELTMDAVAREVGREPWEVRL FT ENLVQPEQMPYVNVTNKHFDSGDYPASLRKALEMIDIDGVRTRQARGEADGRRIGVGVA FT TYTEQAAHGTSVFAAWGTPVIPGFDQATVRVTPDGGLEVRVGVHSHGQGMETTFAQIAH FT EILGIDVARIKVLHGDTGQTPFSTGTYASRSLVMSGGAVSQACKRLLPRMRHIAAHMLG FT VADDAVTLQDGIYRAGEKSVATGDVADAWYLRPQLLPPDVDPAGLEVNVGYKPKVDTGC FT FTYASHAAVVAVDPDTGAVEILDYVVVEDCGTMINPMVVEGQTIGGIAQGIGTAFYEET FT PYDANGQPLASTLADYMLPGPTEVPNMRLHHFETPSPHTEFGAKGMGEGGAIAPPAVLF FT NAVNDALRGLGAAELSRTPLTPIRVLQAIAQGAGEAA" FT misc_feature 594789..594893 FT /note="HMMPfam hit to PF01315, Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain" FT misc_feature 594981..596852 FT /note="HMMPfam hit to PF01315, Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain" FT CDS 597065..597901 FT /transl_table=11 FT /locus_tag="BP0591" FT /product="oxidoreductase, medium chain" FT /note="Similar to Pseudomonas putida quinoline FT 2-oxidoreductase, medium chain QorM TR:P72222 (EMBL:X98131) FT (288 aa) fasta scores: E(): 4.4e-20, 38.182% id in 220 aa, FT and to Arthrobacter nicotinovorans nicotine dehydrogenase, FT medium chain NdhA TR:Q59127 (EMBL:X75338) (283 aa) fasta FT scores: E(): 4.5e-23, 36.015% id in 261 aa" FT /protein_id="CAE44917.1" FT /translation="MKAAQFEYFRAESMQQALQWLRQHDGRAKLMAGGQSLGPMLNLRL FT ARPPVVIDISGVPALREVGERGGRVRVGAAVTHAEIEDGVHAALRGSALQQVATGIAYR FT AIRNRGTIGGSLAHADPAADWVLTMVALGADIEIAGVDGERMVPAESFMQGAYTTVVGE FT GELIAAVHVPAMTDGARWGYYKFCRKAGEFAEASCAAWFEPARWVARIAVGALDGAPCL FT LPGLADAVARQGAAALQAERIDEAVAQAMPGKDALHRKLHATAVARCLKQALGVQE" FT misc_feature 597068..597898 FT /note="HMMPfam hit to PF00941, FAD binding domain in FT molybdopterin dehydrogenase" FT CDS 597898..599085 FT /transl_table=11 FT /locus_tag="BP0592" FT /product="putative iron-sulfur binding protein" FT /note="The N-terminal region of this CDS is similar to FT Pseudomonas putida quinoline 2-oxidoreductase, small chain FT QorS TR:P72223 (EMBL:X98131) (168 aa) fasta scores: E(): FT 2.3e-22, 47.260% id in 146 aa, and to Mycobacterium FT tuberculosis CDC1551 carbon monoxide dehydrogenase, small FT subunit, putative Mt0389 TR:AAK44611 (EMBL:AE006943) (159 FT aa) fasta scores: E(): 4.7e-22, 50.000% id in 146 aa." FT /protein_id="CAE44918.1" FT /translation="MTMVQVTLEVNGRQVAHEASPRMHLGDFLRDQARLTGTHLGCEHG FT VCGACTVLVDGQPVRSCITYAVACEGRQVTTIEGYDGDPVMARLRAAFTKYHALQCGYC FT TPGMLTTSRDIVLRMPDADEARVRVELSGNLCRCTGYMGIVGAVMSVLRDLREQPDAAV FT QALRAAAADGRLPAPRGEQPIAFQPFTPSAPTAAQAEPRPAAAASPVGGKGNQIVDAFT FT VPFPAAEVWAFMVDLPAVAACLPGAVIEETDSQRVKGKIAIKFGPMAAAFNGAARLERD FT EAAMRAVFRGAGQDSLSQSRATGDIAYQVEAVSENETRVKVDLQYALQGPLAQFSRSGL FT VQDFVRRMIADFGKNVTARLRQPGGEALPQAQFNPVAMFFSVLWMRIKRWFGHGG" FT misc_feature 597913..598101 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 598021..598047 FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT misc_feature 598123..598347 FT /note="HMMPfam hit to PF01799, [2Fe-2S] binding domain" FT CDS 599120..600148 FT /transl_table=11 FT /locus_tag="BP0593" FT /product="putative exported protein" FT /note="Similar to Rhizobium loti Mlr6799 protein Mlr6799 FT TR:Q988C5 (EMBL:AP003010) (336 aa) fasta scores: E(): FT 1.4e-16, 27.879% id in 330 aa, and to Agrobacterium FT tumefaciens Agr_l_129gMp TR:AAK88849 (EMBL:AE008228) (329 FT aa) fasta scores: E(): 2.8e-16, 26.074% id in 326 aa" FT /protein_id="CAE44919.1" FT /translation="MEMQKAIGKWWRRAMGGIALLAAAGTAGAQAPEPLRVRLDWTPWG FT VQAAFHLAQQKGWYKQAGLDVTLEDSNGSVTTVQIVGGSDRFDLGHAALASMMIARDKG FT LPVKAVAVFARHSDIGLLVPADSGIAGPEQLKGRKVAYTAGSLEAPFIDAFLARGKLKK FT SDLELINVDAASKASTYAVGRADAAFSTIPFFLPVVSQNRPSRAVRFADFGLDMPSFGL FT FASEDKLRERGEAIGRFASVSARAWEYIYAGHEDEAVSAILAQRPQARLDRTVLRGQID FT ALRGYFGLAAGQRVGAPVPADWEQAVKTLSSVGLVRADAKAADFYVPDLARPQRYDALV FT KP" FT misc_feature 599120..599206 FT /note="Signal peptide predicted for BP0593 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.754 between residues 29 and 30" FT CDS 600145..600933 FT /transl_table=11 FT /locus_tag="BP0594" FT /product="probable ABC transporter, ATP-binding component" FT /note="Similar to Arthrobacter keyseri transporter ATPase FT PtrA TR:Q9AGL2 (EMBL:AF331043) (275 aa) fasta scores: E(): FT 3.8e-32, 48.018% id in 227 aa, and to Agrobacterium FT tumefaciens Agr_l_1027gMp TR:AAK88847 (EMBL:AE008228) (269 FT aa) fasta scores: E(): 1.5e-36, 48.583% id in 247 aa" FT /protein_id="CAE44920.1" FT /translation="MSVAAVSAAGVRKKYPGERGVQALETISIDVPAGRFVSILGPSGC FT GKSTFLRCVAGLETISEGELRVAGQPVKGPPDGIGMVFQRDALLEWRNIRRNILLPVEF FT AGKPVARYRDKVDALLRLTGLAAFADNYPRELSGGMRQRAAICRALVDDPALLLMDEPF FT GALDALTRDQMNVELQRIWMETRNTVMFVTHGIAEAVFLGDEVMVFSPRPGRVLETIRI FT DLPRPRPLAVRETAEFGRYVRHIRGLFEQMGLIDEGGRAP" FT misc_feature 600244..600780 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 600265..600288 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 600550..600594 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 600930..601703 FT /transl_table=11 FT /locus_tag="BP0595" FT /product="ABC transporter, permease component" FT /note="Similar to Rhizobium loti ABC transporter, permease FT protein Mlr6798 TR:Q988C6 (EMBL:AP003010) (275 aa) fasta FT scores: E(): 9.2e-31, 39.592% id in 245 aa, and to FT Agrobacterium tumefaciens Agr_l_128gMp TR:AAK88848 FT (EMBL:AE008228) (267 aa) fasta scores: E(): 8e-32, 42.105% FT id in 228 aa" FT /protein_id="CAE44921.1" FT /translation="MTATGRKCLHAAAGAVSLAVFLLLWEGLGRALEVRPIMLPLPSQI FT ALELAAEWRWYADQAWYTLMTTVAGFAVAVVGGVLIAVMLVSSRWCESFLYPLIVALNS FT VPKVAIAPLFVIWLGTGAEPKIAIAFLIAVFAVIVDTVHGLKSVPQDVLDLGRVLKGSR FT RDFFFKVRLPGALPSIVTGMKVAVSLALVGAIVGEFVSSQRGLGYVIMSAQGTFDTVRV FT FAALTVLAVMGMALFALLVWFERKATPWRTPVEGH" FT misc_feature join(600948..601016,601122..601190,601209..601277, FT 601305..601364,601449..601517,601590..601658) FT /note="6 probable transmembrane helices predicted for FT BP0595 by TMHMM2.0 at aa 7-29, 65-87, 94-116, 126-145, FT 174-196 and 221-243" FT misc_feature 601359..601592 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 601539..601562 FT /note="ScanRegExp hit to PS00030, Eukaryotic RNA FT Recognition Motif (RRM) RNP-1 region signature." FT CDS 601743..602372 FT /transl_table=11 FT /locus_tag="BP0596" FT /product="putative membrane protein" FT /note="Similar to Rhizobium loti Mll5171 protein Mll5171 FT TR:Q98CF5 (EMBL:AP003005) (194 aa) fasta scores: E(): FT 5.1e-34, 50.785% id in 191 aa, and to Agrobacterium FT tumefaciens Agr_pat_389p TR:AAK90645 (EMBL:AE007896) (222 FT aa) fasta scores: E(): 5.4e-38, 53.333% id in 180 aa. FT Almost identical to BP1488, 99.522% identity in 209 aa FT overlap." FT /protein_id="CAE44922.1" FT /translation="MWALLALSRGIDALNLRVGRAVTWVTLLVVLVSAGNAVVRKVFHS FT SSNAWLELQWYMFGAMFLLTAGYTLLKNEHVRVDILSSRLPRHKQIWIEIFGVVFFLLP FT ACTLIMVLSWPVFMDSYLSGEQSSNSGGLIRWPVKLLIPVGFALLVLAGLSHLIKCIGF FT LRGQCPDPTAREGSKSAEELLAEEIAREALEREASVQEQRNNHEGR" FT misc_feature join(601803..601859,601902..601955,602013..602081, FT 602139..602207) FT /note="4 probable transmembrane helices predicted for FT BP0596 by TMHMM2.0 at aa 21-39, 54-71, 91-113 and 133-155" FT CDS 602375..604033 FT /transl_table=11 FT /locus_tag="BP0597" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical FT transmembrane protein Smc04249 TR:CAC46498 (EMBL:AL591788) FT (597 aa) fasta scores: E(): 4.8e-127, 61.922% id in 562 aa, FT and to Rhizobium loti Mll5170 protein TR:Q98CF6 FT (EMBL:AP003005) (589 aa) fasta scores: E(): 7.4e-122, FT 61.749% id in 549 aa" FT /protein_id="CAE44923.1" FT /translation="MEFLIANLAPIMFATLVLFLLLGFPVAFALAANGILYGLVGIELD FT LLSPALFQALPQRVFGIISNDTLLAVPFFTLMGLVLERSGMAEDLLETIGQVFGPLRGG FT LAIAVVFVGAMLAATTGVVSASVISMGLISLPIMLRYGYDRRLASGVIAASGTLSQIIP FT PSLVLIILADQLGRSIGDMYRAAMVPGFVLAGAYIAYVVIVSLVKPSAAPALPEEARRF FT REPNGSRGGRSLLVLMLISSLSAYVLGQWLENDTAPVDEQVVVSLLLWGLTAFVIAIAN FT KVFRLKMLSALAERVTFVMIPPLFLIFLVLGTIFIGVATPTEGGAMGAVGAIIMALIRR FT RLTLDLLKQAMDTTTKLSCFVVFILVGSTVFGLTFRGVNGDLWVEHLLIGLPGGEWGFL FT IVVSVLTFVLAFFLDFFELAFIIVPLLGPVADKMGIDLIWFGIILAVNMQTSFMHPPFG FT FALFYLRSVAPKDAYKDKITGKIIQPVTTGQIYWGSVPFIVIQLFMVAAVMLFPGMVMH FT YKGGQSTVDPASVKIEVEGGYGGSVYGGGDATPFK" FT misc_feature 602375..602467 FT /note="Signal peptide predicted for BP0597 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.703 between residues 31 and 32" FT misc_feature join(602411..602479,602549..602617,602654..602722, FT 602735..602803,602822..602890,602918..602986, FT 603062..603130,603158..603226,603260..603328, FT 603338..603406,603443..603511,603554..603613, FT 603632..603700,603728..603781,603842..603910) FT /note="15 probable transmembrane helices predicted for FT BP0597 by TMHMM2.0 at aa 13-35, 59-81, 94-116, 121-143, FT 150-172, 182-204, 230-252, 262-284, 296-318, 322-344, FT 357-379, 394-413, 420-442, 452-469 and 490-512" FT CDS 604382..605623 FT /transl_table=11 FT /locus_tag="BP0598" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical 41.7 kDa FT protein in nfnB-entD intergenic region YbdK or B0581 FT SW:YBDK_ECOLI (P77213) (372 aa) fasta scores: E(): 1.2e-51, FT 40.872% id in 367 aa, and to Mycobacterium tuberculosis FT hypothetical 42.3 kDa protein Rv0433 or Mt0448 or FT Mtcy22g10.30 SW:Y433_MYCTU (P96279) (376 aa) fasta scores: FT E(): 8.2e-32, 31.831% id in 355 aa" FT /protein_id="CAE44924.1" FT /translation="MEQIPFVSSAPNTLGIELELQLVDPRSFDLAAASDELLAQLANHP FT IADRVKPEITRSMIELNSSVHEHPAGLLAEMREMRDVLCEAADAVGVGVTGGGAHPFMR FT WQDRAISDTPRFQYLAEMYGYLARQFTVFGQHIHLGVPSGDAAVRMVRGLSPYVPHFIA FT LSAASPYCEGVDTLFSCCRLNAVNSFPLAGHMPADVTDWYRFEAHLAQLCASGLAESIK FT DLYWDIRPKPEYGTVEIRVCDTPLTVERACQLAAFAQALAVQVARDPEPSQQAWLAYRS FT NHFQACRFGLHGSYVTPDGQRVRLVDHLRALFERLAPVAEELGTGDMLQTLRDEILRNG FT NDARWLRGQFLKVRELPLVVESMAQNWRGQGVQDTPPSAVRRRIRATSEPVGGVCALST FT PQGDPLPGWAERLH" FT CDS complement(605639..606562) FT /transl_table=11 FT /locus_tag="BP0599" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb0271 TR:Q9K196 (EMBL:AE002383) (262 aa) fasta FT scores: E(): 1.6e-17, 35.102% id in 245 aa, and to Xylella FT fastidiosa biotin synthesis protein Xf2099 TR:Q9PBP1 FT (EMBL:AE004025) (295 aa) fasta scores: E(): 1.1e-13, FT 33.910% id in 289 aa" FT /protein_id="CAE44925.1" FT /translation="MSLPSSLPSLPIVAADVVRQFSRRGDLAQAQFLYGEVAQRMMGRL FT RYIRLQPAALLDAGCGAGASLPLLRDRFPSAAYTGLDAAEPLLAHARQAWTPGGVAAWL FT GRLAQRGKPAVSFVRADLAASGLPPEQLDLVWSNLALHWHPEPHAVLAEWRRILKVGGL FT AMFSCLGPGTLRELREALADAGLRTATPTFVDMHDFGDLLVENGFADPVMDQETLTLTY FT ETPQRLLEDVRALGGNPARDRRAGLAGRAWLDRLHAALEARRGPQGRISLSIEVAYGHA FT WRAPARRAAPGETHLSVSAIGGRRAG" FT CDS 606770..607384 FT /transl_table=11 FT /locus_tag="BP0600" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa probable FT phosphoribosyl transferase Pa0489 TR:Q9I629 (EMBL:AE004486) FT (241 aa) fasta scores: E(): 2.9e-13, 39.109% id in 202 aa, FT and to Neisseria meningitidis hypothetical protein Nma2217 FT TR:Q9JSM9 (EMBL:AL162758) (241 aa) fasta scores: E(): FT 1.5e-12, 35.644% id in 202 aa" FT /protein_id="CAE44926.1" FT /translation="MAALGPATPRCPCCAVRLAPRARHCADCLRLRPAYQRVVAALDYA FT GPYRGLISRYKTACRHELAVALADLMLRAIRQADPPLRGPCLLVPVPASAASLRRRGFN FT PAAELVAALAARLGWPLARTQLRPARVLAGRQTLRGRRDRLRGATGRWRALPVPAGATV FT ALVDDVVTTGATAHCAARALLAAGAGRVIVLAAARTPASHG" FT CDS 607459..607929 FT /transl_table=11 FT /locus_tag="BP0601" FT /product="rRNA methylase" FT /note="Similar to Escherichia coli hypothetical tRNA/rRNA FT methyltransferase YibK or B3606 SW:YIBK_ECOLI (P33899) (157 FT aa) fasta scores: E(): 5.4e-28, 51.282% id in 156 aa, and FT to Neisseria meningitidis RNA methyltransferase, TrmH FT family Nmb0268 TR:Q9K199 (EMBL:AE002383) (154 aa) fasta FT scores: E(): 8.9e-33, 58.974% id in 156 aa" FT /protein_id="CAE44927.1" FT /translation="MFHVVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLR FT RAGLDYHEWQPVQVHDTLPQALAATGAAAPRIFALTTRARTSLADMAFQAGDVFVFGRE FT TAGLSEAHMALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQSGYAGSI" FT misc_feature 607459..607890 FT /note="HMMPfam hit to PF00588, SpoU rRNA Methylase family" FT misc_feature 607504..607533 FT /note="ScanRegExp hit to PS00449, ATP synthase a subunit FT signature." FT CDS complement(join(607948..608940,608943..608945)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0602" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following the start codon. The frameshift occurs FT within a dimeric tract of (CT)2. The sequence has been FT checked and believed to be correct. Similar to Comamonas FT testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 FT aa) fasta scores: E(): 4.9e-36, 37.267% id in 322 aa, and FT to Rhizobium meliloti conserved hypothetical protein FT Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 1.7e-36, 38.019% id in 313 aa" FT /db_xref="PSEUDO:CAE44928.1" FT misc_feature complement(608851..608945) FT /note="Signal peptide predicted for BP0602 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 31 and 32" FT variation complement(608939..608942) FT /note="(CT)2 in pertussis; (CT)1 in parapertussis and FT bronchiseptica" FT CDS complement(609000..610055) FT /transl_table=11 FT /gene="gpsA" FT /locus_tag="BP0603" FT /product="glycerol-3-phosphate dehydrogenase [NAD(P)+]" FT /EC_number="1.1.1.94" FT /note="Similar to Escherichia coli glycerol-3-phosphate FT dehydrogenase [NAD(P)+] GpsA or B3608 or Z5035 or Ecs4486 FT SW:GPDA_ECOLI (P37606) (339 aa) fasta scores: E(): 4.3e-31, FT 41.714% id in 350 aa, and to Pseudomonas lemoignei FT glycerol-3-phosphate dehydrogenase [NAD(P)+] GpsA FT SW:GPDA_PSELE (Q59680) (335 aa) fasta scores: E(): 1.2e-46, FT 55.102% id in 343 aa" FT /protein_id="CAE44929.1" FT /translation="MSQARPATLRVAVLGAGSWGTALAAAASRRHPTVLWARDGAQAQA FT MAARHENTRYLPGVALPHALQVSADLAQALAHLAHDPAHALIILGVPVAGMTPLCTELA FT ARLPALGLQAVPLVWTCKGFEEQTARLPHETVQAALGAMPGLAAGVLSGPSFAREVAQG FT LPVALTVASGSSAVRDAVTTALHGAAVRIYASTDVVGVEVGGALKNVIAVACGICDGLA FT LGTNARAALITRGLAEMARFGAALGAQQETFAGLTGLGDLVLTATGELSRNRRVGLEIG FT AGRKLADILASGMTAEGVRCARAARDRARALNIELPITEAVCAVLFEGLSPMTAVSALL FT AREARPESPTP" FT misc_feature complement(609039..610034) FT /note="HMMPfam hit to PF01210, NAD-dependent FT glycerol-3-phosphate dehydrogenase" FT misc_feature complement(609378..609443) FT /note="ScanRegExp hit to PS00957, NAD-dependent FT glycerol-3-phosphate dehydrogenase signature. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(609984..610055) FT /note="Signal peptide predicted for BP0603 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.824 between residues 24 and 25" FT CDS complement(610071..610598) FT /transl_table=11 FT /gene="secB" FT /locus_tag="BP0604" FT /product="protein-export protein" FT /note="Similar to Escherichia coli protein-export protein FT SecB or B3609 or Z5036 or Ecs4487 SW:SECB_ECOLI (P15040) FT (155 aa) fasta scores: E(): 5.4e-19, 39.041% id in 146 aa, FT and to Neisseria meningitidis protein-export protein SecB FT Nmb1789 TR:Q9JY16 (EMBL:AE002529) (147 aa) fasta scores: FT E(): 1.5e-23, 46.207% id in 145 aa" FT /protein_id="CAE44930.1" FT /translation="MADQDQTNQQAGSDAPSFNLQRVYLKDLSLEMPNAPHVFLEQEAP FT QVEVSINVGGQRLAETVFESTVTVTVTTRVNDKVLYLVEGTQAGIFELANIPAEQMDPL FT LGIVCPTMLYPYLRANVADAITRTSLPALHLAEVNFQALYEQRLAEMAQQQPDAANGND FT SGIILPPGATRQ" FT misc_feature complement(610140..610598) FT /note="HMMPfam hit to PF02556, Preprotein translocase FT subunit SecB" FT CDS complement(610652..610912) FT /transl_table=11 FT /gene="grxC" FT /locus_tag="BP0605" FT /product="glutaredoxin 3" FT /note="Similar to Escherichia coli glutaredoxin 3 GrxC or FT B3610 SW:GLR3_ECOLI (P37687) (82 aa) fasta scores: E(): FT 5.4e-14, 56.250% id in 80 aa, and to Pseudomonas FT fluorescens glutaredoxin 3 Grx3 TR:AAK38716 (EMBL:AF359453) FT (84 aa) fasta scores: E(): 4.2e-15, 56.627% id in 83 aa" FT /protein_id="CAE44931.1" FT /translation="MQKVVMYSKDYCPYCARAQALLKQRGVADLEIIRIDQDPSQRDIM FT IERTGRRTVPQIFIGETHVGGSDDLQALDRSGGLLPLLNGG" FT misc_feature complement(610730..610906) FT /note="HMMPfam hit to PF00462, Glutaredoxin" FT misc_feature complement(610847..610903) FT /note="ScanRegExp hit to PS00194, Thioredoxin family active FT site." FT CDS complement(610946..611368) FT /transl_table=11 FT /locus_tag="BP0606" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5130 TR:Q9HU54 (EMBL:AE004926) (139 aa) fasta FT scores: E(): 6.5e-09, 33.846% id in 130 aa, and to Xylella FT fastidiosa hypothetical protein Xf1800 TR:Q9PCH9 FT (EMBL:AE004001) (161 aa) fasta scores: E(): 2.8e-08, FT 30.935% id in 139 aa" FT /protein_id="CAE44932.1" FT /translation="MDLLQFLIDKNNVFIVAVAVVSGIMLMLPALRKGRAGAAVGTSEA FT IQMVNQRQAVWVDVRPTEQFQAGHIAQARSLPAADLEKKAGALPKNKPLIVVCEQGRDA FT ARIAARLRSQGFAEVSVLEGGMRAWFAAGLPVTQKG" FT misc_feature complement(610973..611248) FT /note="HMMPfam hit to PF00581, Rhodanese-like domain" FT misc_feature complement(611276..611332) FT /note="1 probable transmembrane helix predicted for BP0606 FT by TMHMM2.0 at aa 12-31" FT CDS 611521..612273 FT /transl_table=11 FT /gene="gpmA" FT /gene_synonym="gpm" FT /locus_tag="BP0607" FT /product="phosphoglycerate mutase 1" FT /EC_number="5.4.2.1" FT /note="Similar to Escherichia coli phosphoglycerate mutase FT 1 GpmA or Gpm or B0755 SW:PMG1_ECOLI (P31217) (249 aa) FT fasta scores: E(): 2e-63, 63.821% id in 246 aa, and to FT Borrelia burgdorferi phosphoglycerate mutase Bb0658 FT TR:O51602 (EMBL:AE001167) (253 aa) fasta scores: E(): FT 1.4e-61, 61.694% id in 248 aa" FT /protein_id="CAE44933.1" FT /translation="MYKLVLMRHGESQWNLENRFTGWTDVDLTETGREQARKAGELLKR FT EGYAFDLAYTSVLKRAIRTLWIALDAMDAMYTPVGINWRLNERHYGQLQGLNKAETAAK FT YGDEQVLIWRRAYAIAPEPLDLEDPRHPRFDGRYAKIPADQLPATECLKDTVARVLPFW FT NESIAPAIRAGRRVLVAAHGNSLRALIKHLDNVSDDDIVGVNIPTGQPLVYELDEDLKP FT IRHYYLGDAAEIEAAMAAVAAQGKAKKD" FT misc_feature 611533..612177 FT /note="HMMPfam hit to PF00300, Phosphoglycerate mutase FT family" FT misc_feature 611536..611565 FT /note="ScanRegExp hit to PS00175, Phosphoglycerate mutase FT family phosphohistidine signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 612277..613842 FT /transl_table=11 FT /locus_tag="BP0608" FT /product="putative peptidase" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5133 TR:Q9HU51 (EMBL:AE004926) (428 aa) fasta FT scores: E(): 4.3e-20, 33.665% id in 502 aa, and to FT Escherichia coli hypothetical 46.6 kDa protein in secB-tdh FT intergenic region YibP or B3613 SW:YIBP_ECOLI (P37690) (419 FT aa) fasta scores: E(): 1e-14, 31.218% id in 394 aa" FT /protein_id="CAE44934.1" FT /translation="MRVAAGLLVWAAVAVAPPAAWAVSDLAGRQSEAERQQAALRDRID FT ALQKEIDTREAARKEAADALKESESAISRINLRLRELGEASRKAEAELAGLEKQVVAQQ FT AVLQKRRAELADQLRTQYTSGLSPWTALLSGDDPQQLGRNLGYLDYVSRARAQAVHALR FT EDIARLAALQGQADARRDDIQTLVAETSSQKAALVEQQKTRATLLAKLEGQIAAQRAEA FT GKLGRDDQRLSHLIDDLGSAIARQAEEDARRRAAEEARRKEEEARQAEAARRAEAARQQ FT EAARQAAAAREADARRQAETARQAQQARDAEARDAAAAREQAEAAARQGRGPVALADPD FT AAGLRQVEGGRLVDPQAAPPRETRPAARAEPAEPAPREAAPARTASAAPVGGGNGLRRG FT LPMPVRGTIQGRFGVDRPDGGVWRGLVLRTAEGTPVKVVAPGTVVYAEWLRGFGNLIIV FT DHGQQYLTVYAYNQSLLKRVGDRVAAGDTIATVGATGGQVESGLYFEIRHRGAPVDPAQ FT WLAQ" FT misc_feature 612277..612342 FT /note="Signal peptide predicted for BP0608 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 22 and 23" FT misc_feature 612442..612507 FT /note="Predicted helix-turn-helix motif with score 980 FT (+2.52 SD) at aa 56-77, sequence AARKEAADALKESESAISRINL" FT misc_feature 613582..613830 FT /note="HMMPfam hit to PF01551, Peptidase family M23/M37" FT CDS 613869..615314 FT /transl_table=11 FT /gene="ctpA" FT /locus_tag="BP0609" FT /product="putative carboxy-terminal processing protease FT precursor" FT /note="Similar to Bartonella bacilliformis carboxy-terminal FT processing protease precursor CtpA SW:CTPA_BARBA (Q44879) FT (434 aa) fasta scores: E(): 8.3e-36, 44.545% id in 440 aa, FT and to Bartonella quintana carboxy-terminal protease CtpA FT TR:Q9ZF67 (EMBL:AF110497) (441 aa) fasta scores: E(): FT 1.5e-38, 44.622% id in 437 aa" FT /protein_id="CAE44935.1" FT /translation="MSTRKFRGFGLVAIGAVAGILLSVGVSAVAQRGSPLPLDELRQLS FT NVFAAIKNNYVEAVDDKTLIGNAISGMVSNLDPHSAYLDADAFREMQTATQGEFGGLGI FT EVGAEDGFVKVISPIEDTPAARAGIQAGDLIIKIDDTPTKGMSLNDAVKLMRGAPKSPI FT TLTIMRADRPQPIVVKIVRDIIKVRSVRSKMLDSNVAYLRIAQFQEKTGPDLARHLKEL FT GAKGAPKSLVLDLRNDPGGLLTSAIGVAGAFLPPDALVVSTDGRTPDSRHKYRATPSEY FT ARGEGNYLNDLPGWVKTVPMVVLVNVGSASASEIVAGALQDHKRAKVLGNRTFGKGSVQ FT VILPLSESTAVKLTTSRYFTPSGRSIQATGIEPDYVVADTADGDLFRLPREADLQRHLS FT NQQSPDAEVKSNNDDNTEVAGKAFEFGGKDDFQLQQALNLLAGKPVQKGSARAQAKADI FT KPSEGKTQRMTITPTGVEPAKSK" FT misc_feature 613869..613952 FT /note="Signal peptide predicted for BP0609 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.461 between residues 30 and 31" FT misc_feature 614136..614378 FT /note="HMMPfam hit to PF00595, PDZ domain (Also known as FT DHR or GLGF)." FT CDS 615311..616105 FT /transl_table=11 FT /gene="thiF" FT /locus_tag="BP0610" FT /product="adenylyltransferase" FT /EC_number="2.7.7.-" FT /note="Similar to Escherichia coli adenylyltransferase ThiF FT or B3992 SW:THIF_ECOLI (P30138) (251 aa) fasta scores: E(): FT 1.1e-41, 50.000% id in 252 aa, and to Pseudomonas FT aeruginosa molybdopterin biosynthesis MoeB protein or FT Pa4663 TR:Q9HVC9 (EMBL:AE004880) (252 aa) fasta scores: FT E(): 5.7e-48, 54.365% id in 252 aa" FT /protein_id="CAE44936.1" FT /translation="MNDQQLLRYARHILLDELGIEGQERFLAARVLIIGAGGLGCPAAL FT YLATAGVGHITLVDDDVVELSNLQRQILHASDSVGRAKAESGRDMLARFNPETQVEARV FT ERLGGAALDAAVAQADVVLDCSDNFATRHAINRACVRHRKPLVSGAAIRFDGQVSVYDL FT RDAQAPCYHCLFPEADDVEELNCATTGVFAPLVGIIGSGQAAEALKLLAGIGQSLAGRL FT LQLDVRSMQWHSVNVPRDPDCAVCGQGGQAAEHARGDAAHCA" FT misc_feature 615386..615454 FT /note="1 probable transmembrane helix predicted for BP0610 FT by TMHMM2.0 at aa 26-48" FT misc_feature 615389..615799 FT /note="HMMPfam hit to PF00899, ThiF family" FT CDS complement(616102..617052) FT /transl_table=11 FT /locus_tag="BP0611" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44937.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 616102..616133 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(616102..617154) FT misc_feature complement(616138..616671) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(616729..616794) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(617123..617154) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 617222..618193 FT /transl_table=11 FT /locus_tag="BP0612" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 6.5e-37, 36.196% id in 326 aa, and to FT Comamonas testosteroni Orf4 protein TR:Q9S155 FT (EMBL:AB024335) (325 aa) fasta scores: E(): 3.9e-36, FT 35.831% id in 307 aa" FT /protein_id="CAE44938.1" FT /translation="MHRLIRSTLLAATLAALGPAQAADADGYPQGPISYVVPAPPGGLI FT DTMARTVAETMGRELKQPVVIENKPGGNTNIGIAYVARAKPDGLTWLAVSSTLAVNATL FT FKQLPFDPEKDLIPVALFATTPMGMAVPANSPYSNVQDIIKAAKSGKVLNVGSSGFGTP FT PHLALVLFQRLTGAKFNHIPYKGGAPSLNDLVGGQLDLIFTTLSESRSFIHAGRLKLLA FT VSSSERVKEFPSVPTTGEQGLPDMLIAGWTGLMMPAGTPAPIVDSISAKLVAEVAKPAM FT KQKLEDLGYVVAPQDHARFTRFYRDEIRKWGDVIIQENIERM" FT misc_feature 617222..617287 FT /note="Signal peptide predicted for BP0612 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.988 between residues 22 and 23" FT CDS complement(618253..619059) FT /transl_table=11 FT /locus_tag="BP0613" FT /product="probable transcriptional regulator" FT /note="Similar to Erwinia chrysanthemi pectin degradation FT repressor protein KdgR SW:KDGR_ERWCH (P37728) (305 aa) FT fasta scores: E(): 1.7e-11, 29.057% id in 265 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT Pa2010 TR:Q9I2A1 (EMBL:AE004627) (267 aa) fasta scores: FT E(): 2.3e-26, 35.178% id in 253 aa. Also similar to BP3482 FT (47.244% identity in 254 aa overlap)" FT /protein_id="CAE44939.1" FT /translation="MEKNRRGIQSVELGSRVLQALAQFGRPAGLTELAQECDMPPGKVH FT PYLVSFMKVGFVARDPASGLYELGHLALELGLAKLHRLDPVREASQAIADLAAETGHGT FT GLVVWGNLGPTLIRLEEPAHPLHVNLRIGTVMSLVHTATGRLFAAYLPAKVVSRVLEAD FT PMGVHFGSRHQSRPAQEDYERQLSEIRSRGISRTLGSPIPGIDAFCAPVFDSMGHIAAG FT LLVMGPSATFDSDWDGQIATRLHACANDISRKLGYIDTPASPRAAR" FT misc_feature complement(618298..618864) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS join(619190..619957,619957..620946) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0614" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 256. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa hypothetical protein Pa2243 TR:Q9I1M6 FT (EMBL:AE004650) (577 aa) fasta scores: E(): 3e-91, 47.018% FT id in 570 aa, and to Mycobacterium tuberculosis FT hypothetical 60.6 kDa protein Rv3537 or Mtcy03c7.19C FT TR:P71864 (EMBL:Z82098) (563 aa) fasta scores: E(): FT 6.8e-57, 36.316% id in 570 aa" FT /db_xref="PSEUDO:CAE44940.1" FT variation 619958..619960 FT /note="ACA in pertussis; (G)ACA in bronchiseptica" FT CDS 621022..621981 FT /transl_table=11 FT /locus_tag="BP0615" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni Orf4 protein FT TR:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): FT 1.7e-32, 38.782% id in 312 aa, and to Rhizobium meliloti FT conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 5.6e-29, FT 32.399% id in 321 aa" FT /protein_id="CAE44941.1" FT /translation="MRHSLRIAVLAASALLGAVGPAHAYPTKPVTIVVPFPAGSQTDMV FT ARIAGAELERRLGKPFVVENKPGASGSIAAKYVADSAPDGSTLLLTTAAIQAMNKSLFK FT QPSYDPVKDFTPVAQIATTSMMLMTRPDFPADNVEELVALARKDGNAMSAGYGSSGAQI FT ALALFQARAGTDVLAVPYKGIPNAVTDVIGKTITFTFVDVGNALRFQQGKQLKPLAIAS FT ARRSRLAPSVPSLSESLKDYNITSWYGLVGPKAMPDSVAQSLAQALQASLADAATVEKL FT AVAGVEPAYMPPAPFGKHIELEVDNWARLVQLARIEPQ" FT misc_feature 621022..621093 FT /note="Signal peptide predicted for BP0615 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT CDS 622035..622880 FT /transl_table=11 FT /locus_tag="BP0616" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium tuberculosis CDC1551 FT conserved hypothetical protein Mt3614 TR:AAK47972 FT (EMBL:AE007164) (278 aa) fasta scores: E(): 4.2e-15, FT 27.698% id in 278 aa, and to Agrobacterium tumefaciens FT Agr_c_2623p TR:AAK87214 (EMBL:AE008068) (291 aa) fasta FT scores: E(): 8.6e-11, 30.516% id in 213 aa" FT /protein_id="CAE44942.1" FT /translation="MKIIDFRLRPPAMGFLNARIYTRPDIRNRFTRQLGFEPAPSAEEK FT SLELMFEEMAAAGIEQGVCVGRNSSVLGSVSNADVAAVAKAYPDKFHPVGSIEAATRKE FT AMTQMQEILDLGIRIVNLEPGVWATPMHVDDRRLYPLYAFCEDNGIPVIMMTGGNAGPD FT ITYTNPEHIDRVLGDFPDLTVVSSHGNWPWVQEIIHVAFRRPNLYLSPDMYLYNLPGHA FT DFIQAANSFLADRMLFGTAYPMCPLKEYTEWFLTLPIKPDAMEKILHGNAERLLAQAGR FT " FT CDS complement(622934..623548) FT /transl_table=11 FT /locus_tag="BP0617" FT /product="TetR-family transcriptional regulator" FT /note="Similar to Caulobacter crescentus transcriptional FT regulator, TetR family Cc0992 TR:Q9A9I8 (EMBL:AE005777) FT (210 aa) fasta scores: E(): 1.8e-13, 34.503% id in 171 aa, FT and to Rhodococcus spNCIMB 9784. transcriptional repressor FT CampR TR:AAK50621 (EMBL:AF323755) (206 aa) fasta scores: FT E(): 2.3e-11, 25.000% id in 184 aa" FT /protein_id="CAE44943.1" FT /translation="MHQLKREALLREAIAAFNQKGFHATSLGDIATSLGVTKAALYHYF FT PNKHALLFEAFAEALRVGFEAIEAAERHGGSGLDKLQMAVREYLQVTLSEMSRCVIITE FT EHALEPQDRAKIVEQRDRFEAKLRGFVREGIEDGSVIPCDPKLAIFSIFGAVNWVPKWF FT SDSGNWSNKQLAKGMSELLCRAVARHPAEAFAPDIGKMRVE" FT misc_feature complement(623384..623524) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT misc_feature complement(623396..623488) FT /note="ScanRegExp hit to PS01081, Bacterial regulatory FT proteins, tetR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(623411..623476) FT /note="Predicted helix-turn-helix motif with score 1707 FT (+5.00 SD) at aa 25-46, sequence TSLGDIATSLGVTKAALYHYFP" FT CDS complement(623630..625039) FT /transl_table=11 FT /gene="lpdA" FT /gene_synonym="lpd" FT /locus_tag="BP0618" FT /product="dihydrolipoamide dehydrogenase" FT /EC_number="1.8.1.4" FT /note="Similar to Escherichia coli dihydrolipoamide FT dehydrogenase LpdA or Lpd or B0116 SW:DLDH_ECOLI (P00391) FT (473 aa) fasta scores: E(): 4.1e-94, 55.579% id in 466 aa, FT and to Salmonella enterica subspenterica serovar FT Typhimurium. dihydrolipoamide dehydrogenase Lpd TR:Q9ACP1 FT (EMBL:AJ297525) (475 aa) fasta scores: E(): 4.7e-94, FT 55.246% id in 467 aa" FT /protein_id="CAE44944.1" FT /translation="MASTMETDLLVLGGGPGGYTAAFRAADLGLSVVLVEQRPTLGGVC FT LNVGCIPSKALLHCAKALDEARAMSELGIEFSEPRIRLDKLRAHKEALVAKLCGGLGGL FT ARQRKVEVVTGTGRFDGPHSLAVSDGSRVAFKQAVIAVGSRPVRLPFLPDDPRIMDSTG FT ALELKEIPRRLLVIGGGVIGMELATVYAALGARVTVVELTDGLLPGCDRDLVKPLAQRV FT ASRYEAVLLGTRVSAAQARDDGIHVSFDGPQAPGPQVYDQVLVAAGRRPNGAAIDAERA FT GARVDEGGFIRVDAQQRTNVGHIYAIGDVVGEPMLAHKAAHEGKVAAETAAGMRVANDA FT RVIPAVAYTDPEVAWVGLTETAAQRDGIAYEKAAFPWAASGRALSLGRGEGLTKILVDP FT ATHALLGVGMVGPQAGDLIAEAALAIEMGAEPGDIALTIHPHPTLSETLAFAAEAYEGT FT LTELYLTRKKS" FT misc_feature complement(624110..625015) FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase" FT misc_feature complement(624884..624916) FT /note="ScanRegExp hit to PS00076, Pyridine FT nucleotide-disulphide oxidoreductases class-I active site. FT Confirmed by InterPro eMOTIF pattern match." FT CDS complement(625056..625796) FT /transl_table=11 FT /locus_tag="BP0619" FT /product="branched-chain amino acid ABC transporter, FT ATP-binding protein" FT /note="Similar to Thermotoga maritima branched chain amino FT acid ABC transporter, ATP-binding protein Tm1139 TR:Q9X0M3 FT (EMBL:AE001771) (239 aa) fasta scores: E(): 4.2e-29, FT 46.186% id in 236 aa, and to Deinococcus radiodurans FT branched-chain amino acid ABC transporter, ATP-binding FT protein Dr2118 TR:Q9RSK6 (EMBL:AE002047) (236 aa) fasta FT scores: E(): 8.1e-29, 43.644% id in 236 aa" FT /protein_id="CAE44945.1" FT /translation="MLEVRNLQVSYGAIDAVRGVTLTAQPDGITALIGANGAGKSSLMR FT AISGVTPARGGQILLDGVDITRMPPYERARHGIAHAMEGRRIFHQHTVEENLITAWHFR FT KPKGNFKAALESVYGNFPILEQRRGAKAGTLSGGQQQMLILSMATLHQPRCVLLDEPSL FT GLAPIVVSQIFDFIKQYCAQGGRVVLLSEQMASLALRVADFGYVLKHGQTVFEGTREQL FT ASGAGGDLSSAYLGAGKARPVPTE" FT misc_feature complement(625164..625718) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(625350..625394) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT misc_feature complement(625674..625697) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(625789..627612) FT /transl_table=11 FT /locus_tag="BP0620" FT /product="branched-chain amino acid ABC transporter, FT permease protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport ATP-binding protein FT LivG or B3455 or Z4825 or Ecs4302 SW:LIVG_ECOLI (P22730) FT (255 aa) fasta scores: E(): 2.2e-23, 36.905% id in 252 aa, FT and to Deinococcus radiodurans branched-chain amino acid FT ABC tranpsorter, ATP binding protein Dra0261 TR:Q9RYP8 FT (EMBL:AE001863) (587 aa) fasta scores: E(): 6.1e-44, FT 34.028% id in 576 aa" FT /protein_id="CAE44946.1" FT /translation="MRPMKLLGQLLTNSWTLGVLAIALAVGAGHADTGTVQMWSFVIIN FT ILLAQGINLLTGINGQISLGHAGFFAIGAYVSAIALKSWGVPFPVALAMATIVASGVGF FT LLAGPAGRVREFYLAMMSLGFGLIVYELARELRGVTGGVMGMRGIPSSQIGTLQIFGWS FT IDTVAYFRILLAVLLVVMLMLRNFVKSHYGRAFYAVHVSEIAAGSLGISQAAVKRAAYA FT ISGGLAGLAGGFYAHMIGYLTPESFGLMRSIEILVMSIVGGLGSLAGQVYGAVLFTYLP FT QKLQAFNDYQYIVYGLILVFIFTLLPRGLAGLLGTQTRYSKYDQLRRAVAGQPAAPLGE FT RPSHARRDAAQPLIRVEQVVMEFAGLRALAGVSLDLHAGSITALVGPNGSGKSTLVNVV FT SGIYRPTSGRVLYKGQDIAGWPSHKVAQAGITRTFQDPRNVPSFTVRENILMGAHRRYR FT HGALAAAVNTAGARREEAAFLRQVDALMQAAGLSEHADAIMSELPYGIQRLAEVARALA FT SDPELLLLDEPAAGLSELESGHLIGLVRLARDHGVAVMVIDHHMDFLAELAEDVVVFEA FT GDEIYRGDMDGMRADPAVIQAYLGAEEPAHA" FT misc_feature complement(625882..626478) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(626101..626133) FT /note="ScanRegExp hit to PS00133, Zinc carboxypeptidases, FT zinc-binding region 2 signature." FT misc_feature complement(626434..626457) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(626668..627522) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT misc_feature complement(join(626671..626736,626776..626841, FT 626887..626952,627049..627114,627211..627267, FT 627289..627354,627370..627426,627448..627513, FT 627526..627591)) FT /note="9 probable transmembrane helices predicted for FT BP0620 by TMHMM2.0 at aa 7-29, 33-55, 62-81, 86-108, FT 115-134, 166-188, 220-242, 257-279 and 292-314" FT misc_feature complement(627520..627612) FT /note="Signal peptide predicted for BP0620 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 31 and 32" FT CDS complement(627609..628493) FT /transl_table=11 FT /locus_tag="BP0621" FT /product="branched-chain amino acid ABC transporter, FT permease protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport system permease protein FT LivH or B3457 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: FT E(): 8.7e-22, 32.895% id in 304 aa, and to Salmonella FT typhimurium high-affinity branched-chain amino acid FT transport system permease protein LivH or LivA FT SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 2.1e-22, FT 32.895% id in 304 aa" FT /protein_id="CAE44947.1" FT /translation="MDFFIQMIVSGLSVGAVYALIGLGLNLTFWTTRVLNFGQGSVLMA FT GAMLTAVMVGAGVNVFLAVGVSLLVTAFILWIVELVGVRPMRRMSGSMGWVVSTLGIGI FT FLQGMASWLFGTQAVAFPDVLFSSADTVEFMGAYISLQYIAVFVISVMIVCLMELFLRH FT SIWGYGVRAVAHDRDLAALMGIPVYRVVVFSFLVSGVLAGIAGILVSQVSGTVDPNFGL FT HLLILAFVAAVVGGMGSAFGSLVGGLILGIMEKLVGGYVSPAAAEVVAFVLLIGVLTIR FT PQGLFGKRETVKV" FT misc_feature complement(627624..628484) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT misc_feature complement(join(627660..627725,627747..627812, FT 627858..627923,628011..628076,628146..628211, FT 628248..628313,628326..628391,628413..628478)) FT /note="8 probable transmembrane helices predicted for FT BP0621 by TMHMM2.0 at aa 5-27, 34-56, 60-82, 94-116, FT 139-161, 190-212, 227-249 and 256-278" FT CDS complement(628563..629771) FT /transl_table=11 FT /locus_tag="BP0622" FT /product="putative leu/ile/val-binding protein precursor" FT /note="Similar to Escherichia coli leu/ile/val-binding FT protein precursor LivJ or B3460 SW:LIVJ_ECOLI (P02917) (367 FT aa) fasta scores: E(): 5e-13, 28.428% id in 299 aa, and to FT Rhizobium meliloti probable leu/ile/val-binding protein FT TR:CAC45495 (EMBL:AL591785) (368 aa) fasta scores: E(): FT 6.4e-15, 32.861% id in 353 aa" FT /protein_id="CAE44948.1" FT /translation="MSWYRKSTTCLAVAAAVLASGAALAADTIKIGMTSALTGPYNEFG FT EGNRRAVELAVEQWNAKGGINGKKIEIAMLLDDQLNPDRAVQNIRAILDNKDIVGIIGP FT AGSGPMLAVIDMVQADGRPYMNPIAQTPVVTYPGEKTGEKPRPNVFSFALQNDIEAVAM FT GEYLAKKFKRVGIIHESTAYGVTGVDYLAASIAKNGGAKPVATDSYNQGAQDMTAQVAR FT MKRANVDAIAAIGLGKDLAVLRRTMARLNVNVPLAASNGALGQPYQEGAGELTLGTLGT FT MIGAFGNPMRAPAADFAKAYKAKYGTDRWWGNDPENPQLFMAISVSNGYDAANILFEGI FT RLANSTDPKAVIAAIESIKDYQGVNTAYTFSKERHHGIETDGVKVFEYVKKGDKIRLEP FT IAQ" FT misc_feature complement(629685..629750) FT /note="1 probable transmembrane helix predicted for BP0622 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(629697..629771) FT /note="Signal peptide predicted for BP0622 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 25 and 26" FT CDS complement(join(629846..631189,631193..631204)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0623" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAA stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Methanothermobacter thermautotrophicus FT conserved protein Mth965 TR:O27046 (EMBL:AE000870) (452 aa) FT fasta scores: E(): 5.4e-16, 30.851% id in 376 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa0881 FT TR:Q9I564 (EMBL:AE004522) (450 aa) fasta scores: E(): FT 7.5e-17, 26.667% id in 435 aa" FT /db_xref="PSEUDO:CAE44949.1" FT variation complement(631190..631192) FT /note="in-frame TAA stop codon in pertussis; CAA in FT bronchiseptica" FT CDS complement(631264..632757) FT /transl_table=11 FT /locus_tag="BP0624" FT /product="putative substrate-CoA ligase" FT /note="Similar to uncultured proteobacterium EBAC31A08 FT predicted acid--CoA ligase FadD13 TR:Q9F7P5 (EMBL:AF279106) FT (504 aa) fasta scores: E(): 6.2e-59, 37.600% id in 500 aa, FT and to Amycolatopsis SpHR167 feruloyl-CoA synthetase Fcs FT TR:Q9EY88 (EMBL:AJ290449) (491 aa) fasta scores: E(): FT 3.3e-60, 37.037% id in 486 aa" FT /protein_id="CAE44950.1" FT /translation="MFNLSASIAFHARRTPDKAAIVYRDQEIGYAEFHQRILQAAAMLH FT ARGIGQNDVVALFMKNSAAFLELAFAASYLGAVFLPVNYRLAAPEAAYILGDAGAKLLL FT VDEEFDAIVALETPKIVIDAQAQADSRRLGQPGLEIPPQAAVAETDLVRLMYTSGTTSR FT PKGVMHSYGNLHWKSIDHVIALGLTASEKLLVVGPLYHVGAFDLPGIAVLWVGGTLCVH FT REFDPEAVLASIERHRLTCGWMAPVMLSRVLTVPDPDRFDLDTFAWCIAGGEKTPESRI FT RDFTRVFTRGRFVDGFGMTETCSGDTLMEAGREIEKIGSTGRALPHVEIRIADGAGGWL FT PANRKGEICMRGPKVTKGYWNAPEKTAEAFYGDWLRSGDVGYLDEEGFLFVTDRTKDMI FT LTGAENVASSEVEAALYELPQIAEAAVIGVHDDKWGERITAVVVLNPGQTLTLEEIDRH FT CRQRLASFKVPRELKVVAELPRNPSGKVLKRVLRDEYNG" FT misc_feature complement(631480..632673) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature complement(632263..632298) FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature." FT CDS complement(632837..634012) FT /transl_table=11 FT /locus_tag="BP0625" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Pseudomonas putida FadfX TR:Q9AHX9 FT (EMBL:AF290950) (375 aa) fasta scores: E(): 8.8e-34, FT 33.425% id in 362 aa, and to Archaeoglobus fulgidus FT acyl-CoA dehydrogenase Af0964 TR:O29298 (EMBL:AE001038) FT (394 aa) fasta scores: E(): 5.4e-66, 44.810% id in 395 aa" FT /protein_id="CAE44951.1" FT /translation="MDFSLSDEQKLIVETARRIGEDYGVDYWHDLDRRKAFPQECWQAI FT CDAGLAGVALPQEHGGSGLGMLDLALIVEELSAGGGGATLGQLFMINPIFGGVPISKFG FT SEQMKRELLPALVGGKMNFCMALTEPDAGTNTLAMKSYAEAEPGGGWRLNGRKIWITAV FT DAAQKMLVVVRTSRQTEGARPSDGISMFIIDVEREGLSYSAIDKVGTQTLSACSVFFDN FT VRIEPHELVGTLDKGFRELLDVLNTERIVTTASLIGAGRLAKRLAVQYANDRKVFGGKP FT ISSYQGLQFPLAQSHAELQCARLMNLKAAALCDQRLPYGTEANIAKLIGSQAASHAIER FT SMQTMGGMGYAREFHVERLWSDARLFKFAPVSEEMILNYIAIHDLGMPKSY" FT misc_feature complement(632915..634000) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature complement(632927..632986) FT /note="ScanRegExp hit to PS00073, Acyl-CoA dehydrogenases FT signature 2." FT CDS complement(634018..634839) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0626" FT /product="probable 2-oxo acid dehydrogenases FT acyltransferase (pseudogene)" FT /note="Pseudogene. This CDS has an internal deletion FT relative to its orthologue in B. bronchiseptica. Similar to FT the C-terminal regions of Escherichia coli dihydrolipoamide FT succinyltransferase component of 2-oxoglutarate FT dehydrogenase complex SucB or B0727 SW:ODO2_ECOLI (P07016) FT (404 aa) fasta scores: E(): 1e-17, 41.954% id in 174 aa, FT and to Haemophilus influenzae dihydrolipoamide FT succinyltransferase component of 2-oxoglutarate FT dehydrogenase complex SucB or Hi1661 SW:ODO2_HAEIN (P45302) FT (409 aa) fasta scores: E(): 1.9e-19, 44.253% id in 174 aa" FT /db_xref="PSEUDO:CAE44952.1" FT misc_feature complement(634039..634671) FT /note="HMMPfam hit to PF00198, 2-oxo acid dehydrogenases FT acyltransferase (catalytic domain)" FT misc_feature complement(634606..634827) FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme" FT misc_feature complement(634666..634755) FT /note="ScanRegExp hit to PS00189, 2-oxo acid dehydrogenases FT acyltransferase component lipoyl binding site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(634843..635628) FT /transl_table=11 FT /locus_tag="BP0627" FT /product="probable enoyl-CoA hydratase/isomerase" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-coa dehydratase Crt or Cac2712 FT SW:CRT_CLOAB (P52046) (261 aa) fasta scores: E(): 8.7e-33, FT 39.764% id in 254 aa, and to Clostridium FT thermosaccharolyticum crotonase Crt TR:P97087 (EMBL:Z92974) FT (259 aa) fasta scores: E(): 8.7e-33, 40.698% id in 258 aa" FT /protein_id="CAE44953.1" FT /translation="MSEQSILTEVRDHVGIITINRPKLHNALDTPTLLELERALTTLEA FT DAECRVIVVTGAGEKSFVAGGDLVDLNSRQGLAHYQEFAEDIHHVFRRFETSDKPTIAA FT VNGWALGGGTELLLCLDLRIVADNAAIALTEVNLGLFPGAGGTQRIIRQISPCQAKEMM FT FTGGRISAADAVRIGLANRAVPAADLMAETLALAGQIAAKSPLVLKLLKRTLRDGADMP FT LANALAHEQAMIGLVLDTRDAHEGIGAFLEKRAARFTGQ" FT misc_feature complement(635074..635586) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS complement(635643..636617) FT /transl_table=11 FT /locus_tag="BP0628" FT /product="putative pyruvate dehydrogenase E1 beta subunit" FT /note="Similar to Zea mays pyruvate dehydrogenase E1 beta FT subunit isoform 2 Pdh2 TR:Q9ZQY2 (EMBL:AF069909) (374 aa) FT fasta scores: E(): 4.3e-56, 47.077% id in 325 aa, and to FT Rhizobium loti acetoin dehydrogenase Mll3628 TR:Q98FT4 FT (EMBL:AP003002) (332 aa) fasta scores: E(): 3.5e-60, FT 51.713% id in 321 aa" FT /protein_id="CAE44954.1" FT /translation="MAELRFAHAINRALAECMEEDPMVFLFGEDIAEAGGPFGVTRGLH FT DRFGSDRIRDTPISEATMANAAVGAALSGLKPVLEIMFMDFMTLTMDALVNQAAKARFM FT FGGQASVPMVVRTPHGGGISAGPQHSQCLEAWFAHIPGLKVVCPSNPADAYGLLKSAIR FT DPDPVVFVENKALYAAKGEVPDDVGPIPLGQARIARAGRDLTVVSYGAMVHKVERAAEA FT LARDGIEAEVLDLRSIQPWDEAAVLASLRRTHRLLIVHEAVEAFGVGAEIAARMADIGF FT DELDAPIVRVAAPFVPVPFAPSLEAQYQPQEADIIAAARKLCA" FT CDS complement(636619..637590) FT /transl_table=11 FT /gene="pdhA" FT /locus_tag="BP0629" FT /product="putative pyruvate dehydrogenase E1 component, FT alpha subunit" FT /note="Similar to Clostridium magnum TPP-dependent acetoin FT dehydrogenase alpha-subunit TR:Q46142 (EMBL:L31844) (326 FT aa) fasta scores: E(): 8.2e-48, 43.631% id in 314 aa, and FT to Pseudomonas aeruginosa probable dehydrogenase e1 FT component Pa4150 TR:Q9HWN1 (EMBL:AE004831) (324 aa) fasta FT scores: E(): 3.1e-48, 45.541% id in 314 aa" FT /protein_id="CAE44955.1" FT /translation="MARANKEQLLDAYQRMLGIRLVELRLGRLFADGEVPGFIHLSVGQ FT EAVAAAMGMVLRPDDTVASTHRGHGHALAKGIDMDDFFLELMAREEGICKGRGGSMHVA FT NMSIGMLGANAIVGASIPIALGSALAHQVRKTDALAVAFFGDGAMAEGGLHESLNLAAL FT WQLPLLFLCENNGWAEFSPTHKQFVAPLDKLSAAFSIPHAKVDGNDVLAVMDAAQAAVA FT DIRAGKGPRVLECITHRWRGHYEGDPQKYRDSDEISGLDEHDPVARFEAVLDSKGVSQA FT QRQKVRDAVQAQVDQAVERARKGRPPVWETARTDVYTQAEAR" FT misc_feature complement(636661..637551) FT /note="HMMPfam hit to PF00676, Dehydrogenase E1 component" FT CDS complement(637904..638737) FT /transl_table=11 FT /locus_tag="BP0630" FT /product="probable transcriptional regulator" FT /note="Similar to Escherichia coli negative regulator of FT allantoin and glyoxylate utilization operons AllR or GlxA3 FT or B0506 or Z0660 or Ecs0567 SW:ALLR_ECOLI (P77734) (271 FT aa) fasta scores: E(): 1.7e-10, 27.237% id in 257 aa, and FT to Pseudomonas aeruginosa probable transcriptional FT regulator Pa1015 TR:Q9I4V8 (EMBL:AE004534) (266 aa) fasta FT scores: E(): 4.6e-31, 39.184% id in 245 aa" FT /protein_id="CAE44956.1" FT /translation="MPHFHFSWREKFSVFRMAAEPPEKLVGALVGGLRVLRYLSAAPAG FT VGVTRVARDLQLNSSTCYNFLKTLVYEGLVTFDESTKTYSIALGLVELAKGVLEQGAYV FT RLIHPHLEEIARAHRVTATLWQRTSNERVVLVDRADNDSSVRVHMSVGQRLPMYIAALG FT RCMAANAGLDRDQLEQRFNALRWDDKPPFDEYLAGVQEARKNGYATDAGHYVKGVSTAS FT AAVLDAFGKPVMAISAVGFSAQFTGDALEQLGEDLHERAGRITRALSGGRAGADS" FT misc_feature complement(637937..638488) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS complement(join(638766..639071,639070..639393)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0631" FT /product="C-terminal region of a putative enoyl-CoA FT hydratase/isomerase (Pseudogene)" FT /note="Pseudogene. Due to a large deletion, this CDS is FT truncated at the N-terminus, and it also appears to have a FT frameshift mutation following codon 108. The frameshift FT occurs within a polymeric tract of (CG)4. The sequence has FT been checked and believed to be correct. Similar to FT Rhizobium loti enoyl-CoA hydratase Mlr8461 SWALL:Q982W6 FT (EMBL:AP003014) (273 aa) fasta scores: E(): 1.4e-08, 26.34% FT id in 205 aa, and to Agrobacterium tumefaciens enoyl-CoA FT hydratase/isomerase family protein Atu3481 or Agr_l_2700 FT SWALL:Q8UA93 (EMBL:AE009278) (280 aa) fasta scores: E(): FT 1.8e-08, 31.42% id in 175 aa" FT /db_xref="PSEUDO:CAE44957.1" FT variation complement(639070..639077) FT /note="(CG)4 in pertussis; (CG)5 in bronchiseptica" FT misc_feature complement(639073..639456) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT variation complement(639391..639393) FT /note="large deletion around this position relative to FT bronchiseptica" FT CDS complement(639403..641250) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0632" FT /product="C-terminus truncated putative pimeloyl-CoA FT synthetase (Pseudogene)" FT /note="Pseudogene. Due to a large deletion, this CDS is FT truncated at the C-terminus. Similar to Pseudomonas FT aeruginosa pimeloyl-CoA synthetase Pa1017 SWALL:Q9I4V6 FT (EMBL:AE004534) (715 aa) fasta scores: E(): 2.7e-58, 36.08% FT id in 618 aa, and to Anabaena sp. acetyl-CoA synthetase FT All0769 SWALL:Q8YYS7 (EMBL:AP003583) (916 aa) fasta scores: FT E(): 1.4e-47, 35.23% id in 613 aa" FT misc_feature complement(640828..641175) FT /note="HMMPfam hit to PF02629, CoA binding domain" FT CDS complement(641252..642244) FT /transl_table=11 FT /locus_tag="BP0633" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 5.4e-41, 39.577% id in 331 aa, and to FT Comamonas testosteroni OrfJ protein TR:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 7.1e-42, FT 42.368% id in 321 aa" FT /protein_id="CAE44959.1" FT /translation="MNIGTSFPRISSRLAGALLATLAVAPMQAYAQQAYPSKPIEIIVA FT SSAGGILDTIARAAAYGLERLGQSAVAKNLPGGGGTIATAALARMPGDGYTLGAVATSH FT AINPNIYNKLAYDTGRDFTNITQMVELTNFLVVNPSVPASNLKEFIALAKAKPGTLTYG FT SAGVGQSNHLSGELLQQDAGIKLVHVPYRGSAQALTDVIGGSVSAMFVDALSAEPYVKA FT GKLKLIAATGLARSPAYPDYPTLAESGLPGFNGNTWLGLVAPAGVPKDIVAKLQDAVRA FT EFEDPDVRKRLISQGVIPVASTPQAFSAFLDSEMKRWAEVIKVAGIEAN" FT misc_feature complement(642152..642244) FT /note="Signal peptide predicted for BP0633 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 31 and 32" FT CDS 642492..643640 FT /transl_table=11 FT /locus_tag="BP0634" FT /product="probable acyl-CoA dehydrogenase" FT /EC_number="1.3.99.-" FT /note="Similar to Bacillus subtilis acyl-CoA dehydrogenase FT AcdA or Acd SW:ACDA_BACSU (P45867) (379 aa) fasta scores: FT E(): 1.1e-49, 40.849% id in 377 aa, and to Bacillus FT halodurans acyl-CoA dehydrogenase AcdA or Bh3798 TR:Q9K6D1 FT (EMBL:AP001520) (380 aa) fasta scores: E(): 5.8e-53, FT 41.270% id in 378 aa" FT /protein_id="CAE44960.1" FT /translation="MSLSFAFSSEHEAVRDTVRRLCQEELAPLVFEAEEQEAFPRRVFE FT RWGELGLLGVRYPEADGGSGLDKVSDCIVREELSYLSQAFASTWSAHTHLGIWPIWKAG FT TPAQKARFLAPALAGRKVAGFGLSEPDGGSNVRAMKTRAERVEGGWRLHGSKLYITNAP FT FADFLLVAARTSAALKPESISLFIVELPNAGFDIAKLKKEGIRASETALIHIDNAFVPD FT DCLLGETEGTYPLILESLSENRVGVAANALGMARAAFDAAASFANDRLVAGKRVGEYQA FT IAHKLADMSAQIEATRWLVYYGAWRVDQGTLDAATAARVKLVASETAVAVSEQAIRIFG FT GAGIMREYPVGRIHRDALVYVIGEDTSEIQKNIIARSLGFKP" FT misc_feature 642510..643619 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS 643637..644443 FT /transl_table=11 FT /locus_tag="BP0635" FT /product="probable enoyl-CoA hydratase" FT /EC_number="4.2.1.17" FT /note="Similar to Escherichia coli probable enoyl-CoA FT hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) (262 aa) FT fasta scores: E(): 5.2e-25, 33.846% id in 260 aa, and to FT Rhizobium meliloti putative enoyl-CoA hydratase protein FT TR:CAC49952 (EMBL:AL603647) (263 aa) fasta scores: E(): FT 8.5e-28, 39.147% id in 258 aa" FT /protein_id="CAE44961.1" FT /translation="MSDYVLRERRGATFVITLNRPERRNAFDLEVRQSLAEAIFEARDD FT DAVKAVIITGTQGVFCAGGDLKSLSDGKRPIYQDRDRIRRLHTWFHELVNLEKPVIAAV FT DGPAFGAGFNLALACDFILGTPAARFCAVFGRIGLVPDLGGFFLLPRIVGLQQAKELVF FT TAREVGADEARALGILYRVVPAPGLLDEALALAARFHSASTLALGMSKNILNRSFNLDQ FT NTLAELESHAQALAIHSEYHEAAVARFLDKQPLPFSWPGEDKDGQS" FT misc_feature 643676..644188 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature 643937..643999 FT /note="ScanRegExp hit to PS00166, Enoyl-CoA FT hydratase/isomerase signature." FT CDS 644440..645594 FT /transl_table=11 FT /locus_tag="BP0636" FT /product="conserved hypothetical protein" FT /note="Similar to Rhodococcus spNCIMB 9784 non-specific FT lipid carrier-like protein CampC TR:AAK50624 FT (EMBL:AF323755) (408 aa) fasta scores: E(): 8.1e-37, FT 35.106% id in 376 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa1016 TR:Q9I4V7 (EMBL:AE004534) (383 FT aa) fasta scores: E(): 2.1e-46, 41.425% id in 379 aa" FT /protein_id="CAE44962.1" FT /translation="MSMNAFITGASDTSVGELPGSSCMGLHAEAAFGAIADAGLEPGDI FT DGVLCAYSFTEPHLMLGSVFCEYTGIHPGFCTAVQAGGASACIMIMQAAALVASGQCRH FT VLVVTGDNHLTGLSRDGAVAALAEVGHPQFERPFGISVPASYALVAQRYMHEYGATPEH FT LAAIAVEHRRHAGRHPKAHKRDPISIDDVLNSREISTPLRLLDCCLISDGGAALVISSR FT AASAASSKRSVEILGAGQGHTHEHIVAAPSLTDFGCKASSARAFAAAGVRPADIDVAQI FT YDSFTITLLVELESIGFFERGQAGSAAMQGQLGLGGALPCNTHGGLLSYGHSGAAGGMF FT HAVEAVHQLRGQADQRQVDGARLAFVHGDGGILSAHCSLVLGAA" FT misc_feature 644443..645567 FT /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain" FT CDS 645596..645997 FT /transl_table=11 FT /locus_tag="BP0637" FT /product="conserved hypothetical protein" FT /note="Similar to Thermoplasma volcanium hypothetical FT protein Tvg0142586 TR:Q97CG7 (EMBL:AP000991) (135 aa) fasta FT scores: E(): 1.1e-07, 36.522% id in 115 aa, and to FT Archaeoglobus fulgidus conserved hypothetical protein FT Af0284 TR:O29957 (EMBL:AE001085) (165 aa) fasta scores: FT E(): 2.2e-06, 29.091% id in 110 aa" FT /protein_id="CAE44963.1" FT /translation="MDKPPITPNAESLPFWQGCRDHRLRYQQCASCGTVQRIPRAVCTH FT CHGRALQWRDSAGQGVVLSHTTVRRAPTPAFKADTPYAIALVDLDEGFRLMVNVRGGAG FT APLAIGARVRIVFEARGDGAVPIAEMETP" FT misc_feature 645623..645982 FT /note="HMMPfam hit to PF01796, Domain of unknown function FT DUF35" FT misc_feature 645722..645739 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT CDS 645994..646389 FT /transl_table=11 FT /locus_tag="BP0638" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE44964.1" FT /translation="MTQLYTYETFTPGTVLGEWAEPLDARLVATWGRLFGAEARDQPAR FT QVGLTVALMIRAYLNVVTPRPPGNIHAQQILSIDGLPGVGETVRSRIRCLGKEIRRERR FT YLQLEVSGVGERERNLYTGRMNLIWAA" FT CDS 646386..646778 FT /transl_table=11 FT /locus_tag="BP0639" FT /product="conserved hypothetical protein" FT /note="Similar to Archaeoglobus fulgidus monoamine oxidase FT regulatory protein, putative Af0198 TR:O30041 FT (EMBL:AE001092) (146 aa) fasta scores: E(): 6.9e-07, FT 44.444% id in 90 aa, and to Archaeoglobus fulgidus FT conserved hypothetical protein Af1124 TR:O29141 FT (EMBL:AE001026) (159 aa) fasta scores: E(): 1.6e-06, FT 28.182% id in 110 aa" FT /protein_id="CAE44965.1" FT /translation="MRNTMTQRLEEVSMRVTQADIDIYAELTDDFNPLHVDPAFAATTP FT MGGTIAHGTLSVNLIWQSLARSLGAAALARIDLDIRFLKPLFAGGAITAGGQPDAAEPD FT RYEVWVKGADGATLIAGHARLAPITD" FT misc_feature 646389..646745 FT /note="HMMPfam hit to PF01575, MaoC like domain" FT CDS 646789..647949 FT /transl_table=11 FT /locus_tag="BP0640" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Pseudomonas putida FadfX TR:Q9AHX9 FT (EMBL:AF290950) (375 aa) fasta scores: E(): 3.6e-38, FT 33.858% id in 381 aa, and to Pseudomonas aeruginosa FT probable acyl-CoA dehydrogenase Pa2889 TR:Q9HZV8 FT (EMBL:AE004715) (386 aa) fasta scores: E(): 6.2e-86, FT 55.584% id in 385 aa" FT /protein_id="CAE44966.1" FT /translation="MQFTHEHRELARTTRRIIAEHLDPYLDEWEAAQMFPAHQVMKALG FT SAGLLGIGKPAEYGGMALDFSYEMVFAETLGEVRSSGLSSAIGVQSTMCTPALARHGSD FT ALKRAYLAPTIAGDLVGCIGASEASAGSDVSQIKTWARRDGDDYVINGSKMWITNGVQG FT DWICLLCNTSQEGGPHKNKSLIIVPLDTPGVSVSRKLDKLVLRASDTAELFFDDVRVPV FT SNRIGAENMGFIYQMEQFQEERMFVAARGMRSMERVIEETIAYAGQRQVFGGTVLSNQV FT VYHKLAQMQTEIEALRSLLYRAIGQYLDGQDITQLASMAKYCAGRLSMRIPNECLQFWG FT GQGVMNENWISRAYRDLRQTAIGGGANEIMLEVIAKTMGIHPGKRA" FT misc_feature 646795..647916 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 647797..647856 FT /note="ScanRegExp hit to PS00073, Acyl-CoA dehydrogenases FT signature 2." FT CDS 647987..648958 FT /transl_table=11 FT /locus_tag="BP0641" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 1.5e-40, 40.000% id in 315 aa, and to FT Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 FT (EMBL:AE008213) (329 aa) fasta scores: E(): 4.7e-39, FT 40.312% id in 320 aa" FT /protein_id="CAE44967.1" FT /translation="MHGKNALRALLAGLALGATAAGAAPYPERPVRLIAPIAVGGLTDT FT LARLVASGLADKLGQPVVVENKPGAGGIIGMEAAAQAAPDGYTLILVYQGVAAVNASLY FT KNLPYDTRRDFAPVAGLGNFPLVLVASPASGIQSVGALLERAGKQAKAPSYASAGNATT FT SHLTMELFKNASGLQALHVPYKGEGPANTDVAGGQVDIAFSSLASVAPLVKSGRLVALG FT ISTPERSAVLPDVPTIAQAGVADFEAVGWYGLLAPAGTPAEVVAKLSDAVAAVLDQPAI FT RAKLEALGVNARATPAADFGRQIDAETEKWRAVIQTAGITLD" FT misc_feature 647987..648055 FT /note="Signal peptide predicted for BP0641 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.967 between residues 23 and 24" FT CDS 648966..650114 FT /transl_table=11 FT /locus_tag="BP0642" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3592 TR:Q9HY34 (EMBL:AE004779) (395 aa) fasta FT scores: E(): 1.9e-30, 35.567% id in 388 aa, and to FT Rhodococcus erythropolis putative dehydratase/racemase FT TR:Q9AH11 (EMBL:AF323606) (400 aa) fasta scores: E(): FT 8.9e-30, 32.626% id in 377 aa" FT /protein_id="CAE44968.1" FT /translation="MLNHALAGITVLDFSQGIAGPHGACLLGEMGAEVIKIEPPAGDWL FT RGLGHRQGGTSVLFGYFNRGKAGVALDLKDHAQRRQALALIDKADVLIESNRPGVMARL FT GLGYEQARQRNPGLVYISVTGFGQDGPHRDLPATDAAMQAYSGFSFGAGDMRDPVRVRV FT SVVDIVTGVYVSNAALAALMARHGNQGQGQYIDLSLMHGISAVQGAKYAEHAATRGVIS FT RELYAAIGIYPTRDGHIALSAMRDQQVTDFIGLAGRADLLADPRYATQQARYDNQDELR FT ALIAAELAKQPTAHWIEAARRIDLICQPVQTYDQFRQDPQVRTYELFQDMDLGYDMPLP FT AVRMPGMTATQASLRPPPRLGADTAAVLRRHGASPPSADATP" FT misc_feature 649170..649724 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS complement(650111..651001) FT /transl_table=11 FT /locus_tag="BP0643" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT activator protein LysR or B2839 SW:LYSR_ECOLI (P03030) (311 FT aa) fasta scores: E(): 1.9e-27, 34.843% id in 287 aa, and FT to Pseudomonas aeruginosa probable transcriptional FT regulator Pa5085 TR:Q9HU98 (EMBL:AE004921) (318 aa) fasta FT scores: E(): 1e-25, 35.395% id in 291 aa" FT /protein_id="CAE44969.1" FT /translation="MKLNLRQIEVFRAVMITGSIRGASELLFVSQPAVSRLLSHMEQRI FT GFALFERIRGRLYATLEARKLFHEVEAVYAGVQRVNDMARDLFEHQEGILNLVASPSLG FT QMLIPAAIAQYRQAHPQVKLSFHHLTQAPLTERLLKRQADLALTILPAGHPNLEQEEIG FT AARMVLICPPGHPLAGREPVGAEALAPYPLVAYERGSAFGQKLQAWFDAQSVAARPVIE FT VGSPQNTCALVQAGAGVALVDEFSARSWPGAGFVMRPVRDLAPLTAYLLRLREEPASHL FT MQSFIETLRRVMRRA" FT misc_feature complement(650264..650290) FT /note="ScanRegExp hit to PS00847, MCM family signature." FT misc_feature complement(650561..650989) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(650855..650947) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(650885..650950) FT /note="Predicted helix-turn-helix motif with score 1486 FT (+4.25 SD) at aa 18-39, sequence GSIRGASELLFVSQPAVSRLLS" FT CDS 651208..652155 FT /transl_table=11 FT /locus_tag="BP0644" FT /product="putative dihydrodipicolinate synthase" FT /note="Similar to Thermotoga maritima dihydrodipicolinate FT synthase DapA or Tm1521 SW:DAPA_THEMA (Q9X1K9) (294 aa) FT fasta scores: E(): 8.1e-16, 28.400% id in 250 aa, and to FT Agrobacterium tumefaciens Agr_pat_671p TR:AAK90832 FT (EMBL:AE007915) (302 aa) fasta scores: E(): 6.3e-20, FT 32.056% id in 287 aa" FT /protein_id="CAE44970.1" FT /translation="MQASHGARIDEQTSGVYVIAATPFADDGELDLASLDSLTDFYLDK FT DVAGLTILGMMGEASKLTEAETATVMTRILKRVDGRVPVVVGVSHPSNRHLERLARQAM FT ELGAAGVMVAPAAGRHTDDQVYGYYATVAERLGADIPICLQDFPQSAGVHTSVAVIHRL FT VDDFPQVVMLKHEDFPGMRKLSQVRARSEAEGRRRISILVGNGGLFLPQEMLRGADGAM FT TGFAYPEMLVQVCRLFAAGKAEAAEDLFNLYLPLLRHEFQYGIGLALRKETLRRRGAIR FT SAYVRQPGPALDAVDHAELGRLIARLEAQLGRAA" FT misc_feature 651304..652083 FT /note="HMMPfam hit to PF00701, Dihydrodipicolinate FT synthetase family" FT repeat_region 652152..652183 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 652152..653204 FT CDS 652254..653204 FT /transl_table=11 FT /locus_tag="BP0645" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44971.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 652512..652577 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 652635..653168 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(653173..653204) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 653201..653232 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 653201..654253 FT CDS 653303..654253 FT /transl_table=11 FT /locus_tag="BP0646" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE44972.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 653561..653626 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 653684..654217 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(654222..654253) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(654250..654657) FT /transl_table=11 FT /locus_tag="BP0647" FT /product="conserved hypothetical protein" FT /note="Similar to Pyrococcus abyssi hypothetical 13.6 kDa FT protein Pab1062 TR:Q9UY93 (EMBL:AJ248288) (130 aa) fasta FT scores: E(): 4e-09, 30.328% id in 122 aa, and to Pyrococcus FT horikoshii hypothetical 14.0 kDa protein Ph0353 FT SW:Y353_PYRHO (O58091) (134 aa) fasta scores: E(): 2.1e-08, FT 31.405% id in 121 aa" FT /protein_id="CAE44973.1" FT /translation="MSEVFAVDRAWGPVVEGQALVMREGFSPRYDLDRWSGVISRIGHS FT AEGESIKDRILVIPTAKGGVAGGWAFYDLLHKGIAPKALVFGKLNPVMVQGAVLAGMPI FT MEGFDARLLQAIASGAALRLDPAAKSIALLG" FT CDS complement(join(654654..655355,655351..655923)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0648" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 191. The frameshift occurs within FT a polymeric tract of (CGCGG)2. The sequence has been FT checked and believed to be correct. Similar to FT Methanococcus jannaschii hypothetical protein Mj1313 FT TR:Q58709 (EMBL:U67571) (403 aa) fasta scores: E(): FT 1.2e-30, 28.205% id in 390 aa, and to Pyrococcus abyssi FT hypothetical 42.5 kDa protein Pab1061 TR:Q9UY94 FT (EMBL:AJ248288) (387 aa) fasta scores: E(): 5.7e-30, FT 30.130% id in 385 aa. Also similar to BP2613 (43.137% FT identity in 408 aa overlap)" FT /db_xref="PSEUDO:CAE44974.1" FT variation complement(655351..655360) FT /note="(CGCGG)2 in pertussis; (CGCGG)3 in bronchiseptica" FT CDS complement(655941..656912) FT /transl_table=11 FT /locus_tag="BP0649" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 1.4e-43, 43.168% id in 322 aa, and to FT Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 FT (EMBL:AE008213) (329 aa) fasta scores: E(): 5.1e-43, FT 41.667% id in 324 aa" FT /protein_id="CAE44975.1" FT /translation="MKLRNLIAGGLAATALGLGSVAAAAYPDKPIRIIVPFPAGGATDV FT VARMLGARLGEELGQSVIVENRSGAGGNIGADTVARSPADGYTLLVGSPAEVAINPLLY FT AKMPYDPAKDLVAVARVASAPLVLVVNARSPAHSVADLLAQIKGKDGAANYASSGTGGP FT QHLAGEWFRLESRAGIAHIPYKGGAPAMTDLLGGQVDMFFSGLPPALPHLKAGKLRALA FT VTTPQRSALLPEVPTMAEQGFAGFAIENWQGVFAPAGTPPEVIKLLSGKIGAITREPGF FT AERLQAQGASPAFMDAGDMARFVDAERRKYGKLVKESGAKAD" FT misc_feature complement(656562..656591) FT /note="ScanRegExp hit to PS00215, Mitochondrial energy FT transfer proteins signature." FT misc_feature complement(656832..656897) FT /note="1 probable transmembrane helix predicted for BP0649 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(656838..656912) FT /note="Signal peptide predicted for BP0649 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.436 between residues 25 and 26" FT CDS 657019..657981 FT /transl_table=11 FT /locus_tag="BP0650" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Azospirillum brasilense galactose-binding FT protein regulator GbpR SW:GBPR_AZOBR (P52661) (342 aa) FT fasta scores: E(): 1.7e-23, 31.683% id in 303 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT Pa2206 TR:Q9I1R1 (EMBL:AE004647) (315 aa) fasta scores: FT E(): 4.2e-28, 32.468% id in 308 aa" FT /protein_id="CAE44976.1" FT /translation="MAQQRLAGGSVPAVFKSRLRMKHLELFRNLCELHSLRKAAEASSM FT TQPAATKLIQELESMFGVPLFERDRRGMRPNAHGDLIKRHFNVVMSDVGHMCDELALYA FT SGGAGVVRLGIVPSLSAQLLARITDDLLSAHPNVRLELTEGATDRLMEGLRRNDLDLIF FT GRILDRARISELRVVEVYTESFEVVSAAGHPLARKARVSWEDLSQARWILPATGSPLRD FT MAEQLFTGRGILRPVVSVEYSSFHQMRYVIAGSQLIGLLPTSVALQGEAQGDIARLSPA FT ERARFAPISLISRQDFEQPPVVRQFEAIVLRAARDLGQA" FT misc_feature 657079..657507 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 657118..657183 FT /note="Predicted helix-turn-helix motif with score 1359 FT (+3.82 SD) at aa 34-55, sequence HSLRKAAEASSMTQPAATKLIQ" FT misc_feature 657121..657213 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature 657655..657672 FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT CDS 658100..659821 FT /transl_table=11 FT /gene="dld" FT /locus_tag="BP0651" FT /product="D-lactate dehydrogenase" FT /EC_number="1.1.1.28" FT /note="Similar to Escherichia coli D-lactate dehydrogenase FT Dld or B2133 SW:DLD_ECOLI (P06149) (570 aa) fasta scores: FT E(): 1.2e-136, 58.111% id in 561 aa, and to Neisseria FT meningitidis D-lactate dehydrogenase Nmb0997 TR:Q9JZL7 FT (EMBL:AE002450) (563 aa) fasta scores: E(): 3e-150, 63.129% FT id in 556 aa" FT /protein_id="CAE44977.1" FT /translation="MVHATPPTPGPGDSRGFVEQLRGIVGAAHVLTDEHRTRRYRAGFR FT FGFGRAIAVVRPGSLLEQWRIVQACVAHGKIVIMQAANTGLTGGSTPDGNDYDREIVII FT STMRMKKIQLILDGRQVICFPGSTLDQLEQTLAPLGREPHSLIGSSCLGASVFGGICNN FT SEGSLIQRGPAYTELAVYAQLGEDGRLRLVNHLGVALGDSPEEILGRLDQGQFGANDVE FT TAVGSGSDHEYAEHVRAVDADSPARYNADPRRLFEASGSAGKLILFAVRLDTFPAETQT FT RVFYIGTNDPGELTAIRRHMLTRLPALPIAGEYLHRDAFDIADVYGKDTFLAIRQLGTA FT RLPRLFAIKARIDSFCERVPLLPKYLSDRVLQFASRLFPDHLPRRLREYRDAYAHHLMI FT KVPGKIGDQTRRFLQAYFDDATGASFECTPEEGKAAFLLRFAAAGAAVRYRAVHAGQVE FT DIVALDIALKRNDRDWLEQLPPDVEAPILMKLYYGHFFCHVFHQDYIVKKGEDCLALEH FT RMWKLLDERGAEYPAEHNVGHLYDAKPELKAFYRGLDPCNQFNPGIGRTSKLQGWR" FT misc_feature 658154..658771 FT /note="HMMPfam hit to PF01565, FAD binding domain" FT misc_feature 659582..659602 FT /note="ScanRegExp hit to PS00290, Immunoglobulins and major FT histocompatibility complex proteins signature." FT CDS complement(659865..660995) FT /transl_table=11 FT /locus_tag="BP0652" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Caulobacter crescentus acyl-CoA FT dehydrogenase family protein Cc1311 TR:Q9A8P2 FT (EMBL:AE005806) (401 aa) fasta scores: E(): 2.8e-46, FT 40.476% id in 378 aa, and to Pseudomonas aeruginosa FT probable acyl-CoA dehydrogenase Pa0746 TR:Q9I5I3 FT (EMBL:AE004509) (387 aa) fasta scores: E(): 3.9e-26, FT 31.622% id in 370 aa" FT /protein_id="CAE44978.1" FT /translation="MDFSYSEEQRMLADSLRRFIETGYTFEKRRAIVCGDAGMDPAIWA FT GLAELGIQGLNVRAEHGGFGADAATQLVVQHELGRGLVSEPITPSAVIATTIIQGHGND FT EQRRAWLPGLAAGACIAATAYLEQGGRSNPEAVQTVAERAGEAYVLNGAKTLVWHGAAA FT DVLVVSARLAGTDGLSLFLVPTRGTAGLALASQPTMDGQRAASVRLADVRLPASALLGA FT PGAGLAALQAGLDWGIAALCAEAAGAMERLIELTAEYLRTRKQFGVPLASFQALQHRMA FT DMLVQKELALSMAYVAAQALDEADAAARQRKLSAAKVVVARAGRYVGEQAIQLHGGMGM FT TDEMAPGDYFKRLAMIDPLLGGTDHHLDRYAALLQA" FT misc_feature complement(659964..660365) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature complement(660444..660866) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS complement(661009..662199) FT /transl_table=11 FT /locus_tag="BP0653" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Caulobacter crescentus acyl-CoA FT dehydrogenase family protein Cc1310 TR:Q9A8P3 FT (EMBL:AE005806) (404 aa) fasta scores: E(): 2e-81, 50.495% FT id in 404 aa, and to Pseudomonas aeruginosa probable FT acyl-CoA dehydrogenase Pa1022 TR:Q9I4V2 (EMBL:AE004534) FT (381 aa) fasta scores: E(): 2e-46, 41.582% id in 392 aa" FT /protein_id="CAE44979.1" FT /translation="MDLRFTSEEQAFREEVRGFLAQALPGELSEKVLAHQHLLRDDYIR FT WHRILHAHGWGAPGWPVEFGGTGWTPLQRLIFDIECGRAGAPRLLPFGLSMIAPVLMKY FT GSSAQQQRFLPRMPGVEDFWCQGYSEPGAGSDLASLRTRAERKGDRYVVNGQKTWTTMA FT HWADWIFCLVRTDAEAKPQAGISLLLIDMKTPGITVRPIKTLDGGHDINETWFEDVEVP FT VENLVGEENRGWTYAKYLLGHERTGIAGIGNCHRELAQLKRYAAATADGHGRTLIEDPR FT VRDKIVRIEMDVMALEMLLLRVATQAAGAPGPEASIVKIRGSELQQDLAMLQMEIAGPD FT AWPFDSAWLDGGGQAVDSPAWAACATATYFDMRKTTIFGGVTEVQKNIISKAILGL" FT misc_feature complement(661027..661089) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature complement(661450..661554) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature complement(661603..662022) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS complement(662380..663399) FT /transl_table=11 FT /locus_tag="BP0654" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1.4e-36, 37.690% id in 329 aa, and to Rhizobium meliloti FT conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 4.1e-35, FT 36.677% id in 319 aa" FT /protein_id="CAE44980.1" FT /translation="MCIQIAARTSRLLRRLLFSLSAPLLLGAWAPTAMAADVAWPGLKP FT VTLIVGYPAGGGADTVARLVADRLGKKYNQRFIVENRSGASGTIAATVVARAPADGYTL FT LASASSELTVVPTIRTSLQYDPAKDFEPVAVTSQTTYLLVSNLEFPANTLQELVAYAKK FT NPGKVSYGSYGQNTFTHLTGEYLQLLTGTKLLHVPYKGGGDLIPALLGNQIEISFNSPA FT EVLSQVQAGRMKALAVLSPQRLKEMPSLPTSAKAGYPDLTARGWNGLMAPKGTPTQVLD FT ELNAAVNEIMCSEDVVRDLQARGIEPGGGTRQAARERIDNELQRWRDVVEKVGLQRID" FT misc_feature complement(663295..663399) FT /note="Signal peptide predicted for BP0654 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 35 and 36" FT misc_feature complement(663298..663363) FT /note="1 probable transmembrane helix predicted for BP0654 FT by TMHMM2.0 at aa 12-34" FT CDS complement(663532..664704) FT /transl_table=11 FT /locus_tag="BP0655" FT /product="putative acetylornithine deacetylase" FT /EC_number="3.5.1.16" FT /note="Similar to Escherichia coli acetylornithine FT deacetylase ArgE or B3957 SW:ARGE_ECOLI (P23908) (383 aa) FT fasta scores: E(): 4.8e-26, 32.454% id in 379 aa, and to FT Pseudomonas aeruginosa probable peptidic bond hydrolase FT Pa5390 TR:Q9HTH4 (EMBL:AE004951) (384 aa) fasta scores: FT E(): 4e-107, 70.449% id in 379 aa. Also similar to BP3588 FT (50.134% identity in 373 aa overlap)." FT /protein_id="CAE44981.1" FT /translation="MSSATGDLLARLVAFPTVSRESNLALSSFVQDYLAQAGVASELFY FT NEAGTKANLFATIGLRDRAGIVLSGHTDVVPVDGQPWTTDPFCLTEKDGRLHGRGTADM FT KGFIAAVLAAVPALVERPLRIPVHLAFSYDEELGCLGVGSMLAEIEKRAPLPSMCLIGE FT PTLLRPVLGHKGKAAMRCQVKGHACHSAYAPSGVNAIEYAARLIGKLNEIGERLARPQH FT HDGRFDPPFSTVQTGTIAGGRALNIVPAECEFDFEVRALPGFDPGLVQRELRTYADREL FT LPRMQAVNPETGIEMRPLSAYPGLATEAHSEAARLLAQWCGSDDFGTAAYGSEGGLFSR FT SGIPTVICGPGSMDQGHKPDEFVSLQQLAQCDAMLARLVAHVREPAAQTE" FT misc_feature complement(663868..664680) FT /note="HMMPfam hit to PF01546, Peptidase family FT M20/M25/M40" FT misc_feature complement(664291..664404) FT /note="ScanRegExp hit to PS00759, ArgE / dapE / ACY1 / CPG2 FT / yscS family signature 2." FT CDS complement(664697..665371) FT /transl_table=11 FT /locus_tag="BP0656" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5391 TR:Q9HTH3 (EMBL:AE004951) (224 aa) fasta FT scores: E(): 1.9e-54, 68.304% id in 224 aa, and to FT Aeropyrum pernix hypothetical 32.5 kDa protein Ape1388 FT TR:Q9YC63 (EMBL:AP000061) (301 aa) fasta scores: E(): FT 2.2e-18, 42.771% id in 166 aa" FT /protein_id="CAE44982.1" FT /translation="MTFSIIGLCPDTGQLGVAISSSSIAVGARCPWLKPGVGAVSTQNI FT TLPSLGPAILDLLAAGAAPRQALEQALDADPWRQHRQVTVIDAQGRTASFTGSGALGVH FT HVVEAENCVAAGNLLSNTAVIGAMASAFERAAGPLADRLLAGMAAGVAAGGEAGPVHSA FT ALSLAGEVSWPIADLRVDWDEGCPIASLDALWQAYRPQMQDYLARALNPTVAPTYGVPG FT DE" FT CDS complement(665382..665810) FT /transl_table=11 FT /locus_tag="BP0657" FT /product="putative endoribonuclease" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5392 TR:Q9HTH2 (EMBL:AE004951) (140 aa) fasta FT scores: E(): 5.7e-50, 92.086% id in 139 aa, and to FT Rhizobium meliloti hypothetical 14.1 kDa protein Sma2289 FT TR:AAK65890 (EMBL:AE007308) (130 aa) fasta scores: E(): FT 2.3e-07, 33.333% id in 123 aa" FT /protein_id="CAE44983.1" FT /translation="MPTHTRVRMFNTKDTYPNQTLDNDLCQAVRAGQTVYVRGQVGTDF FT EGRLVGLGDARAQTEQAMSNVKQLLEEAGSDLSHIVKTTTYLVDPRYREPVYQEVGKWL FT KGVFPISTGLVVSALGQPQWLMEIDVIAVIPDGWQAQR" FT misc_feature complement(665409..665759) FT /note="HMMPfam hit to PF01042, YjgF family" FT CDS complement(665841..667115) FT /transl_table=11 FT /locus_tag="BP0658" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5393 TR:Q9HTH1 (EMBL:AE004951) (450 aa) fasta FT scores: E(): 2.8e-129, 75.962% id in 416 aa, and to FT Synechocystis sp hypothetical 46.6 kDa protein Slr0801 FT TR:Q55951 (EMBL:D64005) (416 aa) fasta scores: E(): FT 1.8e-54, 40.594% id in 404 aa" FT /protein_id="CAE44984.1" FT /translation="MTVDSPILTDTLVVGGGQAGIAMSEHLTGQGVPHIVLERDRIAQR FT WRTGRWDSLVANGPAWHDRFPGLEFEGLDPDGFASKDAVADYLEAYARKFNAPIRTGVE FT VVRAERNGGRYGFTVETSAGTYEAQRIVVATGPFQRPVIPAIAPRDPALTQIHSADYRN FT PGQLPEGAVLVIGAGSSGVQIADELQRAGREVYLSVGPHDRPPRRYRGRDFCWWLGVLG FT LWDQETVQPGREHVTIAVSGTDGGRTIEFRALAHQGITLVGVTKSFRDGVVAFENDLAE FT NVARGDANHFALLDAADAYIARNGLSLPDEPQARRVPPDPACMTEPILQLDLAAANVTS FT IIWATGYAAEYGWLNVDAFDANGKPRHQRGVSSEPGVYFLGLPWLSRRGSAFLWGVWHD FT AKHIAGHIAMQRNYLSYPDFGQSQQ" FT misc_feature complement(665937..667079) FT /note="HMMPfam hit to PF00743, Flavin-binding FT monooxygenase-like" FT CDS 667480..668463 FT /transl_table=11 FT /locus_tag="BP0659" FT /product="probable zinc-binding dehydrogenase" FT /note="Similar to Escherichia coli protein YhdH or B3253 FT SW:YHDH_ECOLI (P26646) (324 aa) fasta scores: E(): 3.9e-65, FT 57.500% id in 320 aa, and to Rhizobium loti dehydrogenase, FT zinc-binding alcohol dehydrogenase, NADPH quinone FT oxidoreductase, oxidoreductase Mlr3212 TR:Q98GR0 FT (EMBL:AP003001) (329 aa) fasta scores: E(): 8.3e-71, FT 59.752% id in 323 aa" FT /protein_id="CAE44985.1" FT /translation="MFDALVLEKNDDFNASVRQVDDSFLPDGDVTVDIHYSTLNYKDGL FT AITNRSPVVRDWPMVAGIDGAGIVRASENPAWRPGDAVILNGFGVGEKHKGCLAQRARL FT RGDWLVRLPEGLSLRQAMAIGTAGYTAMLCVMALERNGVRPGDGPVLVTGATGGVGSIA FT VLLLAKLGHQVVAVTGKASEAPYLRSLGAAEILDRAELSGQGKPLQKERWSAAVDVVGS FT HTLANVLAQTRYGGAVAACGLAQGADLPATVMPFILRGVSLIGVDSVMAPLEIRNQAWQ FT RLAKDLDLAMLETLTREIALAEAIPAAHELMAGRVRGRILVGTGNA" FT misc_feature 667519..668451 FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenases" FT CDS complement(668547..669491) FT /transl_table=11 FT /locus_tag="BP0660" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa0218 TR:Q9I6S0 (EMBL:AE004459) FT (306 aa) fasta scores: E(): 9.4e-28, 32.886% id in 298 aa, FT and to Rhizobium loti transcriptional regulator Mll7443 FT TR:Q986A7 (EMBL:AP003011) (303 aa) fasta scores: E(): FT 2.3e-21, 29.097% id in 299 aa" FT /protein_id="CAE44986.1" FT /translation="MLSRITLRQLEYCLAAGDYKSIAEAAACIHVSPSSISAAIAHIES FT ELDAQVFVRHHAQGLSTTPLGEDLLKQMRGVLDQTAGLYGIVSDAQSSIRGPLRVGCFT FT TLAAMVTPELCQGFSRAHPQVQVTHVEDHHEGLIERLYKGQIDVAVTYDLEVQGTDITF FT EPLATLPPHVIVGETSPLAQQRVADLKGLAEHPMVLLDLPRSREYFFGLFHAQQLEPLV FT AARSGSPDVVRSLVANGVGYSLVNVRPRMSHSLDGKRVLSLRLAGKHQPMRLGMAWIPV FT PRPRRVLEAFMQRCRTYISDEHVPGMVAPSHFM" FT misc_feature complement(669042..669473) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(669339..669431) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(669369..669434) FT /note="Predicted helix-turn-helix motif with score 1682 FT (+4.92 SD) at aa 20-41, sequence KSIAEAAACIHVSPSSISAAIA" FT CDS complement(669639..671780) FT /transl_table=11 FT /locus_tag="BP0661" FT /product="putative acetyl-CoA synthetase" FT /EC_number="6.2.1.13" FT /note="Similar to Entamoeba histolytica acetyl-CoA FT synthetase TR:Q9NAT4 (EMBL:AF286346) (713 aa) fasta scores: FT E(): 7.1e-57, 32.460% id in 687 aa, and to Pseudomonas FT aeruginosa pimeloyl-CoA synthetase pa1017 TR:Q9I4V6 FT (EMBL:AE004534) (715 aa) fasta scores: E(): 5.4e-63, FT 32.345% id in 708 aa" FT /protein_id="CAE44987.1" FT /translation="MDNASVSPGFTRPPRLSVARIVAPGSIAVVGASDDLKKFGGRIIH FT YVTRNGYRGTVIPVNPRRAEVAGLLAVPSIAHLGPVDVAILALPVDMIEQAIGECAAAG FT VGACVIVSAGFAELGDEGVARQDRIVRIAREAGMRLVGPNCMGIINPHHRMALTSSLVV FT EQGELLPGNIGLISQSGALMVSMYDRACREQIRFSACVSLGNQCDLEICDFFEYMIDDP FT LTRVITMYVEGFVDTGRFAKLARRAQRAGKPVLLTKTGRTAAGAEAARSHTASLAGNYR FT ALEALCEATGVTIVDDPDGMLQLAAILARFGRCAAEGVGIVSPSGGAIGIGVDRLSDVG FT IRLGRLDAASQQLLGTVMNPSHAFNPVDLGNRTTEEMSQLRTIVQAYNQAPDIGVIFVI FT LTTSPHFEQVTLALGQAMAQAGGKPVLFLVTPGGVADNCRTLLQDLGLPYVDRMDDATR FT ILRHYVPKADALPARDAPRPASWPMPEGAGRMLGARPGESEVKALLRAYGIPLAQERFC FT RTAEQAVEAARAIGFPVVLKAVSAQLVHKSDIGAVKLRLADDAAVRRAWAEIEQALSSQ FT VDGAVLDGCLVAEMVTAQSELLVGAINDAQFGPMIMVGFGGVTVELVPDTQLAVAPVDT FT EQAMALLRRLKQWPLLDGYRGMPKADVAAVAEVVSRVSWLIADLRDQVAELDINPLLIR FT AGDGKPIGVDARAAMLGPG" FT misc_feature complement(671376..671720) FT /note="HMMPfam hit to PF02629, CoA binding domain" FT CDS complement(671780..672559) FT /transl_table=11 FT /locus_tag="BP0662" FT /product="probable enoyl-CoA hydratase" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydratase Crt or Cac2712 FT SW:CRT_CLOAB (P52046) (261 aa) fasta scores: E(): 8.8e-24, FT 33.725% id in 255 aa, and to Halobacterium sp enoyl-CoA FT hydratase Fad2 or Vng0428G TR:Q9HS32 (EMBL:AE004998) (256 FT aa) fasta scores: E(): 8.7e-24, 35.878% id in 262 aa" FT /protein_id="CAE44988.1" FT /translation="MAGTIDITHEGAVSTMTINAPPLNVFSVEMLHALLEGLQALEQRE FT QTRAIVIRGAGSRAFSAGANLNDQADFSEHDARMLRVIGREVVERIETLEKPVITAIEG FT WCIGGGTGIAWIGDIRIASDTAKFRAGDAYLGIIPTWSIGMVRLVHFLGRNRTLGLLLL FT GEDIDAAAALELGLVTRVVPAGEFNEQVAQIAARLATAAPMSVKAIKLAVRAQYRDNTD FT RAAQLEEEWCTRIWASEDKNEGIAAFKEKRQPRFKGR" FT misc_feature complement(672011..672520) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS 672958..673851 FT /transl_table=11 FT /locus_tag="BP0663" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor putative FT lipoprotein Scbac1a6.20C TR:Q9ADG7 (EMBL:AL589708) (367 aa) FT fasta scores: E(): 0.0011, 26.549% id in 226 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa3449 FT TR:Q9HYF7 (EMBL:AE004765) (333 aa) fasta scores: E(): FT 0.006, 24.473% id in 237 aa" FT /protein_id="CAE44989.1" FT /translation="MKLRLAENFRAVFYAPFYALKALGHAGREGLEIEWLPPAGPGGAI FT DEVKAGAVDLTWGGPMRVIKDHDSAPDNGASLLSFGEAVGRDPFSLVGRAGLAARGLHD FT LPSLRLGVVSEVPTPWYCLRADLHDRGIDIARDGRLVEALTMPQQVQALADGTLDVAQL FT FEPCASQALAAGGRLLYDAASRGPTVYTTFICSRDGLARNGAALAALDRALRATQAWIH FT AHDARDLARLTAPFFTELAPDILHAAIERYRRNGIWSETTHVNKEGFDRLACSLHSGGF FT VSSRIGYEACVHNFDH" FT CDS 673915..674934 FT /transl_table=11 FT /locus_tag="BP0664" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 1.9e-44, 39.752% id in 322 aa, and to FT Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 FT (EMBL:AE008213) (329 aa) fasta scores: E(): 1.4e-44, FT 40.426% id in 329 aa" FT /protein_id="CAE44990.1" FT /translation="MAILHPLNFARGLCRLPRLALSASILLLASLASPAASAADAFPNR FT SIRMIAPFSAGGPADIVSRLYAQHLSDLMGQPVVVLNRDGAGGIIGTNEAARAAPDGYT FT IVFGTTSTMVINQIISKKLPYDFFRDFSLVGLIANAPHVLAVRADFPARTVPELIALAK FT QHPGKYTFATSGIGTIVQMGGELLKYTAGINLMHVPYKGGGPATLALLGGEVDMTVNDL FT TTIKNHIASGKLRALAVADKNRLALLPDVATFTELGLPKMVSSTWWGIALPQATPADIQ FT ARFQAANSKIVANPDYAARLAELAVQPLVLTDQEARDFIAAETQKWQTIANVADISVD" FT misc_feature 673915..674028 FT /note="Signal peptide predicted for BP0664 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.943 between residues 38 and 39" FT CDS 674991..675971 FT /transl_table=11 FT /locus_tag="BP0665" FT /product="thymidine diphosphoglucose 4,6-dehydratase" FT /note="Similar to Saccharopolyspora erythraea thymidine FT diphosphoglucose 4,6-dehydratase Gdh TR:Q54116 FT (EMBL:L37354) (329 aa) fasta scores: E(): 2.7e-13, 26.524% FT id in 328 aa, and to Streptomyces tenebrarius AprE FT TR:Q9F5R6 (EMBL:AF306787) (332 aa) fasta scores: E(): FT 3.6e-13, 29.429% id in 333 aa" FT /protein_id="CAE44991.1" FT /translation="MSVLVTGGAGFVGLNLIEQLLERGEDVVAFGPAPLPDAATAAMAH FT LPGRLSTVLGDVRRGADLDAALREHAVDRVVHGAAVTAGLEREKNAAADIFTVNLLGAV FT KVMEAGLRHGVRQVVQLGTGSVFGAAGQVEGMLDETSAVLPETLYGISKFAAERTGVRY FT RKTRGLNLTVLRLGTVFGRWEYDTGVRDTLSLPLQLSGIAEAGGQAVVHSLAADDWVYS FT VDVARGILAVLDRGQTPDPVYHLSAGARWSVRDWCERLRERFPRFAYRMADNLDECTIG FT RDKAVQRAPMDIARLRRDTGYEPLYMLERAFDDYLAWRAAVGRIA" FT misc_feature 674997..675959 FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family" FT CDS complement(676169..678001) FT /transl_table=11 FT /gene="glmS" FT /locus_tag="BP0666" FT /product="glucosamine--fructose-6-phosphate FT aminotransferase [isomerizing]" FT /EC_number="2.6.1.16" FT /note="Similar to Escherichia coli FT glucosamine--fructose-6-phosphate aminotransferase FT [isomerizing] GlmS or B3729 SW:GLMS_ECOLI (P17169) (608 aa) FT fasta scores: E(): 1.2e-120, 53.984% id in 615 aa, and to FT Neisseria meningitidis glucosamine--fructose-6-phosphate FT aminotransferase GlmS or Nma0276 TR:Q9JWN9 (EMBL:AL162752) FT (612 aa) fasta scores: E(): 1.7e-139, 60.616% id in 617 aa" FT /protein_id="CAE44992.1" FT /translation="MCGIVGAVAQRDITPILIEGLKRLEYRGYDSCGVALYMDGHLRRT FT RSTKRVAELSEQVAEDKLGGFTGIAHTRWATHGIPATYNAHPHFSAQGKDEPRIALVHN FT GIIENHEELRQELQGVGYVFESQTDTEVIAHLVNHLYAGDLFEAVQQAVRRLQGAYAIA FT VFCRDEPHRVVGARQGSPLVVGLGQNENFLASDALALAGTTDQIIYLEDGDVVDLQLAR FT VWIVDQAGKQVERKAHTVQVHTGAAELGPYRHFMQKEIFEQPRAVGDTLQDIESITPEL FT FGDGAYKVFKEIDSLLILACGTSYYAGLTAKYWIESIARIPVAVEIASEYRYRDSVPNP FT NALVVTISQSGETADTLAALKHVRSLGMQHTLTVCNVVTSAMVRECELAYITRAGVEIG FT VASTKAFTTQLTALFLLTLALAQTRGRLTEEQEAEHLKALRHLPAAIGAVLALEPQIMA FT WADRFASKENALFLGRGMHYPIALEGALKLKEISYIHAEAYPAGELKHGPLALVTEHMP FT VVTIAPKDALLEKLKSNMQEVRARGGELYVFADADSKIANAEGMHVIRMPEYYGALSPI FT VHTIPLQLLSYHTACVRGTDVDKPRNLAKSVTVE" FT misc_feature complement(676214..676624) FT /note="HMMPfam hit to PF01380, SIS domain" FT misc_feature complement(676736..677143) FT /note="HMMPfam hit to PF01380, SIS domain" FT misc_feature complement(677447..677998) FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II" FT misc_feature complement(677984..678001) FT /note="ScanRegExp hit to PS00443, Glutamine FT amidotransferases class-II active site." FT CDS 678151..678639 FT /transl_table=11 FT /locus_tag="BP0667" FT /product="AsnC-family transcriptional regulator" FT /note="Similar to Escherichia coli hypothetical FT transcriptional regulator YbaO or B0447 SW:YBAO_ECOLI FT (P54986) (152 aa) fasta scores: E(): 2.4e-13, 33.333% id in FT 150 aa, and to Haemophilus influenzae hypothetical FT transcriptional regulator Hi0224 SW:Y224_HAEIN (P44580) FT (168 aa) fasta scores: E(): 1.6e-17, 37.162% id in 148 aa" FT /protein_id="CAE44993.1" FT /translation="MQNTPNPSVPLDDLDRRILDQMQRDCTLTNQELAARVHASPPTCL FT RRVRRLVDEGVIEKQVAIVAPAKVGSTLTAIVEITLDVQAAERLAEFEASLLDEPAVLQ FT CYRVSPGPDFVVIVQVADMPAYHALAHRVFTAQANVRNVRTFFSVHRAKFETRIGIGG" FT misc_feature 678232..678297 FT /note="Predicted helix-turn-helix motif with score 1218 FT (+3.34 SD) at aa 28-49, sequence LTNQELAARVHASPPTCLRRVR" FT misc_feature 678253..678564 FT /note="HMMPfam hit to PF01037, AsnC family" FT CDS complement(678661..679845) FT /transl_table=11 FT /locus_tag="BP0668" FT /product="probable thiolase" FT /note="Similar to Cucurbita maxima 3-ketoacyl-CoA thiolase FT precursor TR:P93112 (EMBL:D70895) (461 aa) fasta scores: FT E(): 1.1e-50, 42.569% id in 397 aa, and to Deinococcus FT radiodurans acetyl-CoA acetyltransferase Dr1428 TR:Q9RUF8 FT (EMBL:AE001987) (402 aa) fasta scores: E(): 4.6e-94, FT 65.140% id in 393 aa" FT /protein_id="CAE44994.1" FT /translation="MLDAVIVSTARTPIGKARRGALNLTHGADLGAHAIRHAVLRAGLE FT AGEVEDVILGCGYPEGGTGRNVARLSALRAGMPVTVSGMTVQRACSSGLQAIAIAAGRI FT RTEGVPAIVAGGVESVSLVLDHINRSSHRNEWLSAHLPGIDMTMIETADLVAQRYGISR FT EAQDEYALRSQRLTAAAQEAGRFEHEIAPIRTTMRTIDPATGEAVLRQVECARDEGARP FT DTSLDNLARLAPVRGDGQFVTAGNASQLSDGAAACVLMSGREAARRGLEPLGVFRGFAT FT VGCEPQEMGIGPVLAVPRLLERHGLTVDDIDLWELNEAFACQVLYCRDRLGIPDARLNV FT DGGAISIGHPFGMSGARMVGHALIEGRRRGARYVVVTMCVGGGMGAAGLLEVQQ" FT misc_feature complement(678667..679845) FT /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain" FT misc_feature complement(678781..678831) FT /note="ScanRegExp hit to PS00737, Thiolases signature 2. FT Confirmed by InterPro eMOTIF pattern match." FT CDS complement(679875..681992) FT /transl_table=11 FT /locus_tag="BP0669" FT /product="probable enoyl-CoA hydratase/3-hydroxyacyl-CoA FT dehydrogenase, bifunctional enzyme" FT /EC_number="4.2.1.17" FT /note="Similar to Cavia porcellus peroxisomal bifunctional FT enzyme EhhadH SW:ECHP_CAVPO (P55100) (725 aa) fasta scores: FT E(): 1.9e-65, 41.018% id in 707 aa, and to Rhizobium loti FT enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase Nll4199 FT TR:Q98EK7 (EMBL:AP003003) (689 aa) fasta scores: E(): FT 6.5e-103, 46.802% id in 688 aa" FT /protein_id="CAE44995.1" FT /translation="MTNPDFEHIKPVVSVARHRNVAVLSVDNPPINALSDTVRAGLCSA FT LREAEADPAVRAVVLACEGNTFVAGADIREFARAKGAAEAIDVPAVIESCRKPVVAALH FT GQALGGGLELALACHGRVALAGCRLGLPEITLGLIPGGGGTQRLPRLIGLEAAAELILS FT GATIDAETARESGLLDAVWPDRLRERAIEFAASLADSPAGVRRASTLAHPPMSPQTGQD FT LRKIAESRPAALRAPQAGAAAVEALSAAAQPDFARGRALERELFARLRDGEESRALRAL FT FFAERSARRVGLDDATSAPPMAHDAAVVGAGTMGRGIAIALADAGLRVRFIDVEQASLD FT RALEAIRAHYRSLAARGRMTEAAARDAVARISPASDMQAAAEADVVVEAAFEDLAIKQA FT IFRQLDSIVRPGAVLATNTSTLDVDAIAAATRRPQDVVGTHFFSPANVMRLLEVVRGAR FT TAPRTLGAVLALGRRMGKVCVTVGVCDGFVANRMSAHRARQIELLLQHGALPQDIDQAA FT REFGFSMGPCAATDLAGLDISWRIRRGKGARSPIADALCELGRFGQKVGRGYFSYAPGS FT RVAVPDPEVEALIRRMAEQLGIRRQSFDLATITDRLILPVINEGARVLQDGVARQARDI FT DLIWVHGFGWPARRGGPMFHAERVGLASVCDRLARLADALEDASLQPAPLLRDLATRGA FT GFASLHAARQA" FT misc_feature complement(679896..679919) FT /note="ScanRegExp hit to PS00030, Eukaryotic RNA FT Recognition Motif (RRM) RNP-1 region signature." FT misc_feature complement(680277..681077) FT /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain" FT misc_feature complement(681444..681929) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS 682250..684052 FT /transl_table=11 FT /locus_tag="BP0670" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Escherichia coli AidB protein B4187 FT SW:AIDB_ECOLI (P33224) (541 aa) fasta scores: E(): 1.4e-32, FT 30.983% id in 468 aa, and to Pseudomonas aeruginosa FT probable acyl-CoA dehydrogenase Pa3593 TR:Q9HY33 FT (EMBL:AE004779) (575 aa) fasta scores: E(): 7.1e-91, FT 47.120% id in 573 aa" FT /protein_id="CAE44996.1" FT /translation="MPLANHEVSPSRPRTADAAESIPNDCRGQNFWRLDPSLRQLLALC FT ADTEELRHFTPHFDRLGELAGNTLDELADAADKHPPTLAPRDRHGRDVDRIDYHPAYRE FT MERIAFSEFGMAAIGHKPGVLGWPGHASPLVKYTLTYLFSQAEFGLLCPVNGNDAAVGM FT IQRYADDTLKQRMAGMLSQDMRTLLKIGHFMTERTGGSDLAGIGTHARFDGSAWKIYGE FT KWFYSAIDADYVLVLARPEGAPAGTRGLGMFVVPRLLEDGTRNRYRIARLKNKLGTRSM FT ATGEVVFDGALAHAIGQGRDGIRYAVLPINASRLSHGVRAAGMMRRCLNESLHFARRRA FT AFGKPVIAHPLMKRSLLKIMVPTEQALSACMFVASTMHRAGADDPRDRKIVRLATALLK FT FRACRDNATVATAAMEVRGGSGYIEEWINARLVRDAQTGLLWEGTSNINALDIVTRAVA FT RDAAHEALRQRLMELARDARVPPRHGAALTQAVEEAVARIAAIAADPQLEHLARSASSR FT LYHVMTAVLLAHEGAMLAARTGDARRLLLSWMVLMHRIEHAEPFDGEHARRESRAADLL FT LDVDRPVTLEALHAVTGMLDANAA" FT misc_feature 682829..683305 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 683411..683611 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 683492..683551 FT /note="ScanRegExp hit to PS00073, Acyl-CoA dehydrogenases FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 684134..685120 FT /transl_table=11 FT /locus_tag="BP0671" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus 2,4-diphenoxyacetic FT acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta FT scores: E(): 1.3e-29, 32.288% id in 319 aa, and to FT Comamonas testosteroni OrfJ protein TR:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 7.6e-31, FT 32.110% id in 327 aa" FT /protein_id="CAE44997.1" FT /translation="MQKKRRALLSLLGASAFPALAGQAFGQGPAWPTRHLRFISGGAAG FT GTSDIVARNLQEPLQSKFGQSVVIENMPGVGGLIGAGNAARATDGHTFFVSNLASNVLS FT VLLYEKVPFDWHTDLPGVARCCTLPNGLFVRSDTGITSAQQLFDTLRKDPEKRVFSSAA FT IGTTSHLSCVMLGQRLGIDLLHIPFKGAAGNMLGLLQGDVFFTIENIPTFAALVKEGRL FT RLLAVSTAERSPNFPDVPTIQESDIENFDVFSWFGISAARSTPRAAIDAVAAEILGQLA FT EPVMQTRFENLGMTVAGLGPDAYDKFIASEMADWGATVKAAGLKPAK" FT misc_feature 684134..684196 FT /note="Signal peptide predicted for BP0671 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.773 between residues 21 and 22" FT misc_feature 684152..684211 FT /note="1 probable transmembrane helix predicted for BP0671 FT by TMHMM2.0 at aa 7-26" FT CDS 685172..687361 FT /transl_table=11 FT /locus_tag="BP0672" FT /product="acetyl-CoA synthetase" FT /note="Similar to Pseudomonas mendocina pimeloyl-CoA FT synthetase TR:Q9ZER2 (EMBL:AJ012480) (711 aa) fasta scores: FT E(): 2.2e-99, 40.979% id in 715 aa, and to Entamoeba FT histolytica acetyl-CoA synthetase TR:Q9NAT4 (EMBL:AF286346) FT (713 aa) fasta scores: E(): 1.1e-55, 31.549% id in 710 aa" FT /protein_id="CAE44998.1" FT /translation="MPTPSQSRRPGSGHTLTALFEPRSVAVVGASDDPSKIGGRPLHLL FT KAARFALPIYPVNPARSVVQGLDAYARITETPTRPDLAIVAVPAAHVLATFDDVVAAGA FT RAAIVYTSGFAEIGAEGVKVQAELTARARASGVRVLGPNCLGVINTRSKLIATFSGAVG FT HAPPRPGSIGLASQSGALGAHCLVLAERRGIAFSVWATSGNESDIDVAELIAYMATDPG FT THVIVACIEGVRDAGRLIEALELARTHGKQIVMMKVGSSPIGAAAAASHTASMVGSDQV FT FDAVLREFGVYRAHSIEDMLDVAYALTVHQSPRGRSLAVVTTSGGVGVLLADEAERLGV FT DMPELPAIAQARIRELLPYAGTRNPVDVTAQITNTPEILGPMLDALLASGTVGSLLLFL FT SHLGLNAAMMRRLMPALTALSKRPGPQVRVACLLACDEVRQELEALGFSVFEDPTRAIR FT TVAALMEIATAQAQARPARTLPRLPDTAHAVTPGMQYSETEAKRLVRSIGIQTLPERIA FT QDPAQAAAIATELGFPVALKIVSPEILHKSDVGGVQLAVQTADEARSVYTSMMARVRRN FT CPQARIDGIAIAPMARPGVDLILGCIQDPTFGPCLMLGSGGVYTEILADAVIRRAPFDA FT ATARSMIAQLKGAPLLDGARGMPRADTDALAQAVAMLSVYAYANRRHIESLEINPLRVL FT PAGQGVVALDALATTVRHPTEPGEATVCPAQEAHS" FT misc_feature 685226..685573 FT /note="HMMPfam hit to PF02629, CoA binding domain" FT CDS 687358..688155 FT /transl_table=11 FT /locus_tag="BP0673" FT /product="conserved hypothetical protein" FT /note="Similar to Chlorobium limicola ATP-citrate lyase FT alpha-subunit AclA TR:Q9AJC4 (EMBL:AB054670) (608 aa) fasta FT scores: E(): 0.0026, 21.961% id in 255 aa, and to FT Methanothermobacter thermautotrophicus citrate synthase I FT Mth962 TR:O27043 (EMBL:AE000870) (280 aa) fasta scores: FT E(): 1.4e-15, 31.727% id in 249 aa" FT /protein_id="CAE44999.1" FT /translation="MNDMHHFTTAISKIVSTPQEEETIIRGHRLSDLIREQPFVASAFL FT LLTGRLPDAGEARTLDAVLTACVDHGVTPAAAIGRTFASYGAPIAQAMAGAALLYGDVA FT GGVGDPLAAMMKQAIAEAGARNGAPGEHDVDAAAGNLVAAALRAGGRMPGFGNPPHARD FT PRPRVLLEVARCAGTAGIHCELLLAAERHLAAAKGRDIPINIDGIVAALALDLGLPDGC FT AAALVMIARKFSVLTHYLEEKGQNTKWRHVPQECVHYTGPMPS" FT CDS 688152..688988 FT /transl_table=11 FT /locus_tag="BP0674" FT /product="probable transcriptional regulator" FT /note="Similar to Salmonella typhimurium acetate operon FT repressor IclR SW:ICLR_SALTY (P17430) (274 aa) fasta FT scores: E(): 9.3e-08, 25.410% id in 244 aa, and to FT Caulobacter crescentus transcriptional regulator, putative FT Cc1811 TR:Q9A7B3 (EMBL:AE005855) (257 aa) fasta scores: FT E(): 3.5e-17, 29.555% id in 247 aa" FT /protein_id="CAE45000.1" FT /translation="MIGALRHACPGSRAAAFVLSGLQTMTNEVKSAVRVIQILEYFDTV FT RREAGVLEISRALGFPASSTAGILRSLQRLSYLVQDEQRLYRPTPRVTLLGSWIDPLLA FT HDGPLMALMSHLSKATGETIILALQVDAGARYIHIIPSTQRVRLHVNVGDVRPLLTSGT FT GRLFVSTMEPDQVRRAVFRHNALRGANEPEINLSTVTRDATQIRKNGYATSLDRLVPGV FT GIIAALLPEREGTRPMAVAVGGPSVTIRTRTAELASLLREGIGQYLPHLGNAGDQS" FT misc_feature 688407..688940 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS 689008..691383 FT /transl_table=11 FT /locus_tag="BP0675" FT /product="probable molybdopterin oxidoreductase" FT /note="Similar to Rhodobacter sphaeroides biotin sulfoxide FT reductase SW:BISC_RHOSH (P54934) (744 aa) fasta scores: FT E(): 9.8e-113, 42.457% id in 749 aa, and to Mycobacterium FT tuberculosis CDC1551 molybdopterin oxidoreductase Mt1487 FT TR:AAK45750 (EMBL:AE007018) (766 aa) fasta scores: E(): FT 6.1e-146, 49.547% id in 773 aa" FT /protein_id="CAE45001.1" FT /translation="MKERDTNAARPDGEPPVQWRRHSSHWGVFDAAHTGDRLKVRPFAG FT DPDPNRLIENLPDAIRHGVRVPEPMVRLGWLRDGPGPDTRRGSDDYVPMSWDEILDRLA FT RKLRRVVDHHGTAGVFGGSYGWSSAGRFHHAQSQLHRFLNVALGGYVRSVHSYSSGAAQ FT VVLPHVVGGFDEVTLCNVSWEQITRHTDVVLAFGGMALKNSRVAAGGVSRHIERQAMAQ FT AAGRGCRFYTIGPQRDDLPTEAAATWLPVVPGTDVALMLGIAHTLVAAGLHDRDFVVDF FT CDGWPVFEDYLLGRADGLAKNAAWAAALCGIDAAAITELALGLAGKRVLVTVAHSLQRA FT DHGEQPVWMGLVLAALLGQVGLEGGGYSYALGSISKYGRRKNAVSIAALPQGANHEKRF FT IPCARIADMLLSPGETFPYNGRTLRYPHIRLAYWAGGNPFHHHQDLGRLAQAFQRLDTF FT VVHEIGWTATARHADIVLPCTMTLERDDIGASPTDDLMVAMQQVVPPYADARNDYDIFS FT DLAQRMGCGAAMTEGRSASDWLQWIYAATREQLAAKGLDAPSFDAFWEKGELRLPQRPD FT DGGAQRAFRLDPAAHPLPTPSGRIQIASAQIAAFGYDDCPGHPAWLPPADPVSAAYPLY FT LVANQPANKLHSQFDYGGYSQASKREGREVCTLHPALARAREIGEGDIVRIYSPRGSCL FT AAATLSTDIREDVVRLPTGAWYDPEQDERGLPMCVHGNPNAVTRDAGTSSLAQGCSGQL FT TAVQIEKYLGPLRDVRAYCPPAIATRPGPPGPLAPPAG" FT misc_feature 690376..690567 FT /note="HMMPfam hit to PF00384, Molybdopterin FT oxidoreductase" FT misc_feature 690907..691272 FT /note="HMMPfam hit to PF01568, Molydopterin dinucleotide FT binding domain" FT repeat_region 691380..691411 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 691380..692432 FT CDS 691482..692432 FT /transl_table=11 FT /locus_tag="BP0676" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE45002.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT" FT misc_feature 691740..691805 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 691863..692396 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(692405..692432) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT tRNA complement(692825..692900) FT /note="tRNA Phe anticodon GAA, Cove score 86.41" FT CDS 693155..694429 FT /transl_table=11 FT /gene="hemA" FT /locus_tag="BP0677" FT /product="glutamyl-tRNA reductase" FT /EC_number="1.2.1.-" FT /note="Similar to Escherichia coli glutamyl-tRNA reductase FT HemA or B1210 or Z1981 or Ecs1715 SW:HEM1_ECOLI (P13580) FT (418 aa) fasta scores: E(): 1.1e-63, 45.232% id in 409 aa, FT and to Neisseria gonorrhoeae glutamyl-tRNA reductase HemA FT SW:HEM1_NEIGO (Q9ZHD6) (415 aa) fasta scores: E(): 1.3e-72, FT 50.605% id in 413 aa" FT /protein_id="CAE45003.1" FT /translation="MSVAVLAFGLNHTSAPVSVRERVSMPVDLVKPALEGLRATFGGAV FT REAAILSTCNRTELYCAAEGQVAEHLPAWLAEHNRLEAAALRPHLYRHQHDDAVRHAFR FT VASGLDSMVLGEPQILGQMKDAVRAANEAGALGTLLHQLFQRTFSVAKEVRSQTAIGAH FT SVSMAATAVRLAERVFGQLEDARTLFIGAGEMIELCATHFAAQRPRSMVVANRTIERAE FT TLAGRFSAQTMKLADLTERLAEFDVIVSCTASSLPILGLGMVERATRQRRHRPMVMIDL FT AVPRDIEPEVGRLDDVYLYSVDDLGRLVQSGTDARRAAVVQAEAIIETRVQGFMHWMQS FT REVVPVIRDLHQAADDVRAAELERARRMLARGESPEAVLEQLAHGLTQKYLHGPLAALN FT RSEGDERRQLLAWVPRLFPGRDSRR" FT misc_feature 693161..694414 FT /note="HMMPfam hit to PF00745, Glutamyl-tRNAGlu reductase" FT misc_feature 693455..693526 FT /note="ScanRegExp hit to PS00747, Glutamyl-tRNA reductase FT signature." FT misc_feature 693629..693676 FT /note="ScanRegExp hit to PS00012, Phosphopantetheine FT attachment site." FT CDS 694516..695598 FT /transl_table=11 FT /gene="prfA" FT /gene_synonym="sueB" FT /gene_synonym="uar" FT /locus_tag="BP0678" FT /product="peptide chain release factor 1" FT /note="Similar to Escherichia coli peptide chain release FT factor 1 PrfA or SueB or Uar or B1211 SW:RF1_ECOLI (P07011) FT (360 aa) fasta scores: E(): 9.8e-89, 65.922% id in 358 aa, FT and to Neisseria meningitidis peptide chain release factor FT 1 Nmb1686 TR:Q9JY93 (EMBL:AE002519) (358 aa) fasta scores: FT E(): 2e-96, 71.989% id in 357 aa. Also similar to BP1104, FT 40.571% identity in 350 aa overlap." FT /protein_id="CAE40989.1" FT /translation="MKPSMRSRLEQLAHRLIEVDALLAEPETAADMDRFRKLSRERAEL FT EPVVEAFNAFLGVEADVATAQEMLSDPDMKAMAEDEIKTGRARIEEMEAALQLLLLPRD FT PDDGRSLFLEIRAGTGGDESALFSGDLLRMYTRYAETRGWRVEIMSESESELGGYKEVI FT ARIDGDGAYGRLKFESGAHRVQRVPATEAQGRIHTSACTVAVMPEADAMSDIVINPSDL FT RIDTFRASGAGGQHINKTDSAVRITHVPTGLVVECQDDRSQHRNKDKAMQVLAARLKDK FT EMRERQSKEAAERKSLIGSGDRSERIRTYNYPQGRVTDHRINLTLYKLQQIMEGDLDEL FT TGALLAEHQAEQLAALGHDL" FT misc_feature 695137..695478 FT /note="HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase FT domain" FT CDS 695609..696421 FT /transl_table=11 FT /gene="hemK" FT /locus_tag="BP0679" FT /product="heme biosynthesis protein" FT /EC_number="2.1.1.-" FT /note="Similar to Escherichia coli HemK protein or B1212 FT SW:HEMK_ECOLI (P37186) (277 aa) fasta scores: E(): 1.2e-32, FT 42.578% id in 256 aa, and to Neisseria meningitidis HemK FT protein or Nma0369 TR:Q9JWH6 (EMBL:AL162753) (273 aa) fasta FT scores: E(): 7.5e-41, 48.846% id in 260 aa" FT /protein_id="CAE40990.1" FT /translation="MTLLKDLLADPGLPRLEARMLAEHVLGRSRAWLLAHDTDPVEPAH FT EAAWRQLAARRLAGEPMAYLLGGREFMGHWYALTPDVLIPRPDTELLVETALHWLQGRA FT APRVLDLGTGSGAIAVSVALGCPQAEVTATDLSAAALAVAEGNAQRLGARVRCLAGDWY FT EALPAQDRYDLIVSNPPYIAREDAHLAQGDLRFEPRGALTDENDGLAALARIAGGAPGR FT LLPGGAIWMEHGWDQAEAARALLRQAGLREVHSRRDLAGIERISGGYL" FT misc_feature 695807..695842 FT /note="ScanRegExp hit to PS00213, Lipocalin signature." FT misc_feature 696131..696151 FT /note="ScanRegExp hit to PS00092, N-6 Adenine-specific DNA FT methylases signature." FT CDS 696458..696784 FT /transl_table=11 FT /locus_tag="BP0680" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma0984 or Nmb0773 TR:Q9JR73 (EMBL:AL162754) (103 FT aa) fasta scores: E(): 2.8e-24, 66.337% id in 101 aa, and FT to Rhizobium meliloti conserved hypothetical protein FT Smc00538 TR:CAC46360 (EMBL:AL591788) (111 aa) fasta scores: FT E(): 9.6e-21, 57.009% id in 107 aa" FT /protein_id="CAE40991.1" FT /translation="MSDVQEFIRETVTQHPVVLFMKGTTQFPQCGFSGRAIQILKGCGV FT KKLVTVNVLEDDEVRQAIKTFSNWPTIPQLYVGGEFIGGSDIMSEMNESGELKQLLDDS FT GATA" FT CDS 696789..697349 FT /transl_table=11 FT /locus_tag="BP0681" FT /product="probable flavoprotein" FT /note="Similar to Streptomyces sp VdcB TR:Q9X696 FT (EMBL:AF134589) (200 aa) fasta scores: E(): 4.8e-33, FT 51.892% id in 185 aa, and to Escherichia coli phenylacrylic FT acid decarboxylase-like protein Pad1 TR:Q9F8R0 FT (EMBL:AF242211) (197 aa) fasta scores: E(): 1.5e-31, FT 49.189% id in 185 aa" FT /protein_id="CAE40992.1" FT /translation="MRRLVVGITGATGAIYAVRLLQALRGVSDVESHLIVSASGVLNIK FT HELDVGRHDVQALADHVHSVRDVGATLASGAFQTAGMVIVPCSMRTLAAVAHGLSDNLI FT TRAADVTLKERRRLVMMVRETPFNLAHLRNMTAVTEMGGIIFPPLPAFYHRPASIEEMV FT DHTVARVLELFDIEVPGPHWAGM" FT misc_feature 696792..697157 FT /note="HMMPfam hit to PF02441, Flavoprotein" FT CDS 697590..698582 FT /transl_table=11 FT /locus_tag="BP0682" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus 2,4-diphenoxyacetic FT acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta FT scores: E(): 1.4e-38, 36.577% id in 298 aa, and to FT Rhizobium meliloti conserved hypothetical protein Sma1927 FT TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): FT 2.3e-42, 38.769% id in 325 aa" FT /protein_id="CAE40993.1" FT /translation="MQRRSFLAKVAHIAAAVGVSACAATSSFAATGDFPNKPLDIIVTF FT PPGGGTDMLARLIGNYLTESLGQTAVVENRPGASGNVGARLVADRAPDGYSLLMVNSSF FT AVNPGVFRNLPFDPKKDFAAVINVAYVPSVFVVPAGSKYKTLGELMAAAKQTNTQVTYG FT SCGNGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFIKA FT GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAK FT VMQRDDVQKKLADLGYSTASDGPEVFQKMVETDIDRFSALTKQIGLKVD" FT misc_feature 697590..697676 FT /note="Signal peptide predicted for BP0682 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.982 between residues 29 and 30" FT misc_feature 697605..697673 FT /note="1 probable transmembrane helix predicted for BP0682 FT by TMHMM2.0 at aa 13-35" FT misc_feature 697623..697655 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 698601..699596 FT /transl_table=11 FT /locus_tag="BP0683" FT /product="4,5-dihydroxyphthalate decarboxylase" FT /EC_number="4.1.1.55" FT /note="Similar to Burkholderia cepacia FT 4,5-dihydroxyphthalate decarboxylase OphC TR:Q9ZFR0 FT (EMBL:AF095748) (330 aa) fasta scores: E(): 6.3e-68, FT 49.848% id in 329 aa, and to Comamonas testosteroni FT 4,5-dihydroxyphthalate decarboxylase PhtD SW:PHTD_COMTE FT (Q59727) (330 aa) fasta scores: E(): 3.6e-65, 48.632% id in FT 329 aa" FT /protein_id="CAE40994.1" FT /translation="MSSKLKISLSCGDYDRTRALFDGRAPIEGCEVTAVPLEPEEAFHR FT AFRYHEYDVTEISMSSHMMTTARGDNEYIAIPAFLSRVFRHSGIYVRTDRDIDKPQDLR FT GKTIGVPEYQITANVWIRGILEDAYGVKPQDIKWRRGGIEEPGRGERAPIELPDGIDLQ FT QIPDDKTLSDMLEAGEIDGYIGARAPSCFLRGAPNVGRLFNDYLKTEQDYFRETRIFPI FT MHMVGIRRSLVEQNPWLPVSVYKAFLKAKMLAVKELNEICHLAVTLPWMVHHYNAAREL FT MGDDYWPYGLDANRHVIETFARYHYGQGLSRRLVKPEELFAASSLDLSKI" FT CDS join(699612..700388,700390..700482) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0684" FT /product="molybdopterin dehydrogenase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 259. The frameshift occurs within FT a polymeric tract of (T)3. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas putida FT quinoline 2-oxidoreductase, medium chain QorM TR:P72222 FT (EMBL:X98131) (288 aa) fasta scores: E(): 1.2e-31, 37.063% FT id in 286 aa, and to Arthrobacter nicotinovorans ketone FT dehydrogenase medium subunit KdhM TR:O87681 (EMBL:AJ306903) FT (296 aa) fasta scores: E(): 2.5e-37, 39.175% id in 291 aa" FT /db_xref="PSEUDO:CAE40995.1" FT misc_feature 699615..700442 FT /note="HMMPfam hit to PF00941, FAD binding domain in FT molybdopterin dehydrogenase" FT variation 700388..700390 FT /note="(T)3 in pertussis; (T)2 in parapertussis and FT bronchiseptica" FT CDS 700479..700988 FT /transl_table=11 FT /locus_tag="BP0684A" FT /product="probable 2Fe-2S ferredoxin" FT /note="Similar to Pseudomonas thermocarboxydovorans carbon FT monoxide oxygenase [cytochrome b-561], small chain Cut C FT TR:Q52589 (EMBL:X77931) (163 aa) fasta scores: E(): FT 1.1e-31, 57.051% id in 156 aa, and to Sulfolobus FT solfataricus carbon monoxide dehydrogenase, small chain FT amino-end fragment CutC-2 TR:Q97VI6 (EMBL:AE006859) (163 FT aa) fasta scores: E(): 5.3e-32, 54.658% id in 161 aa" FT /protein_id="CAE40996.1" FT /translation="MSDITESTAQHVSLTVNGRACGGCAEPRMHLADFLRGELGLTGTH FT IGCEHGVCGACTVLVDGYSTRSCLMLAVQAQDSRIDTIEGLAGEDDALHPIQQAFHELH FT ALQCGYCTPGILMSVAELLAANPNPDEAQVRDVLSGHLCRCTGYQNIVAAVLRAAQLMR FT AEAGHD" FT misc_feature 700512..700700 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 700620..700646 FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT misc_feature 700722..700949 FT /note="HMMPfam hit to PF01799, [2Fe-2S] binding domain" FT CDS 700981..703362 FT /transl_table=11 FT /locus_tag="BP0685" FT /product="probable dehydrogenase/oxidase" FT /note="Similar to Pseudomonas putida quinoline FT 2-oxidoreductase, large chain QorL TR:P72224 (EMBL:X98131) FT (788 aa) fasta scores: E(): 7.5e-52, 36.189% id in 782 aa, FT and to Arthrobacter nicotinovorans ketone dehydrogenase FT large subunit KdhL TR:CAC37487 (EMBL:AJ306904) (794 aa) FT fasta scores: E(): 9.9e-82, 35.379% id in 766 aa" FT /protein_id="CAE40997.1" FT /translation="MTDATSPGLGRSAPRIEDDALLRGQARFLDDIEVEGVLHACFVRS FT PHAHARLVSIDLSAARAVPGVAAVYGARDLFGQLTSWRMPLGFPLAALPDDTTPFVLAE FT REVAFVGEAIAVVVADSRHIAEDAAARVAIEYEVLGAVVDCRDALRPDAPLVRGELASN FT ILQQYTLAYGDCETAFAQAHRVLEDDFWVHRGCAHPMEGRGVLARMDRATDTLTVWSST FT QMAHELHYTLALMLGQPEDRLRVVTPDVGGGFGAKFMIYPEEMAIPAAARKLGRPVKWV FT EDRREHFTTSIQERDQYWKVAMAIDDQGHVLGIRGNFVHDNGAYTPQGTNVPYNAASSM FT TGPYVVPAFSLDVSVAYTNKVPVATVRGAGYPQAAFVMERMMDRVAAELGIDPGECRRR FT NLIGPAKIPYTKPLKSRAGMPLTIDSGDFPALQACALQASDYDGFAVRRDAALARGRWR FT GIAVANSVEPTGRGPFEVARVRVQPSGQVSIYTGALAMGQGIKTTLAQICAGHLGVPVA FT AVEVQAGDTAYVGYGMGGFASRQAIMAGSAVDQAAAQVRRQALETAAAVLKAEAETLEL FT ADGEVRAPDGQSVSLARLAMLRKGVPGYALVSPGDPGLDATAYFHCDAQTYAGASHVCE FT VEVDPATGAIEIVRYVAAQDSGRIINPQLAEGQVHGGVVHGIGNALFEWMGYDAAGQPL FT STTFAEYLLPTAPEVPPIEVVFQPSPTPLNPLGVKGVGECATIPVAVAVVGAVEHAVAH FT CGVRVTEFPLTPVRLLELLTQAEARAAAPTDSGEFVDGVH" FT misc_feature 701047..703110 FT /note="HMMPfam hit to PF01315, Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain" FT misc_feature 702397..702426 FT /note="ScanRegExp hit to PS00215, Mitochondrial energy FT transfer proteins signature." FT CDS join(703403..703765,703769..704125) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0686" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Arthrobacter nicotinovorans Orf235 FT TR:AAK64256 (EMBL:AF373840) (235 aa) fasta scores: E(): FT 4.7e-09, 31.604% id in 212 aa, and to Mycobacterium FT tuberculosis CDC1551 hypothetical 21.6 kDa protein mt0384.1 FT TR:AAK44606 (EMBL:AE006943) (200 aa) fasta scores: E(): FT 1.7e-07, 34.194% id in 155 aa" FT /db_xref="PSEUDO:CAE40998.1" FT variation 703766..703768 FT /note="In-frame TAG stop codon in pertussis; CAG in FT parapertussis and bronchiseptica" FT CDS complement(704230..705180) FT /transl_table=11 FT /locus_tag="BP0688" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE40999.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 704230..704261 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(704230..705282) FT misc_feature complement(704266..704799) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(704857..704922) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(705251..705282) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(705279..706229) FT /transl_table=11 FT /locus_tag="BP0689" FT /product="putative lipoprotein" FT /note="Similar to Pseudomonas aeruginosa rare lipoprotein A FT precursor RlpA or Pa4000 TR:Q9X6V6 (EMBL:AF147448) (342 aa) FT fasta scores: E(): 8.6e-23, 39.869% id in 306 aa, and to FT Vibrio cholerae rare lipoprotein A, putative Vc0948 FT TR:Q9KTF4 (EMBL:AE004177) (263 aa) fasta scores: E(): FT 3.4e-23, 37.079% id in 267 aa" FT /protein_id="CAE41000.1" FT /translation="MIRSRPLALLSTLLLALAIAGCSTPGKKRGGYYKDDGPDANPPSN FT LDNVPDATPRLEPLASGPNRPYVVFGKRYVPDTSERPFRQQGLASWYGKKFHGNSTSNG FT ESYDMYAMTAAHPTMPIPSYARVTSKINGRTVIVRVNDRGPFHSDRIMDLSYVAAHKLG FT IIGPGSGPVTVERILPAEILAMNGGAAAPRPGPASATGPLPVAAPSAAAAVELHPATQL FT ASNAPTPPRPAAGAGSGVYLQLGAFSQPANAESLVSRINGQLDPASGIPPAVVEQANNL FT YRVRIGPYATREAALGAVQPVADRTGILPSLSATP" FT misc_feature complement(706164..706196) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(706167..706229) FT /note="Signal peptide predicted for BP0689 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.564 between residues 21 and 22" FT CDS complement(706226..707098) FT /transl_table=11 FT /locus_tag="BP0690" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb0738 TR:Q9K080 (EMBL:AE002428) (284 aa) fasta FT scores: E(): 6e-48, 46.643% id in 283 aa, and to Vibrio FT cholerae hypothetical protein Vc2532 TR:Q9KP47 FT (EMBL:AE004322) (286 aa) fasta scores: E(): 1.9e-42, FT 43.554% id in 287 aa" FT /protein_id="CAE41001.1" FT /translation="MLRVVLITGISGSGKSVALRLLEDAGFTCIDNLPVRFLAEFIANA FT RDDAMERVAVAIDVRSPGELAELPDVITASRAMGTSLSVIFLDANTDTLVQRYSESRRR FT HPLTDRLARGGKTPSLAECIALERELMAPLRDQEHVIDTSDLTPGQLRAWIRDLIQADR FT PPLVLTFESFAYKRGVPSDADLMFDVRCLPNPYYDRTLRPLTGRDEPVATWLGGFDIVT FT QMIDDIAAFIRRWLPQYTQDTRNYLTVAIGCTGGQHRSVYVVEQLARRFSDHDPLLVRH FT RTQLPDDPA" FT misc_feature complement(706631..706696) FT /note="Predicted helix-turn-helix motif with score 1076 FT (+2.85 SD) at aa 135-156, sequence RDQEHVIDTSDLTPGQLRAWIR" FT misc_feature complement(707051..707074) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS join(707270..707929,707929..708019) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0691" FT /product="probable cytochrome C (pseudogene)" FT /note="Similar to Pseudomonas aeruginosa probable FT cytochrome C Pa2482 SWALL:Q9I100 (EMBL:AE004676)(217 aa) FT fasta scores: E(): 2.9e-14, 33.01% id in 212 aa." FT /db_xref="PSEUDO:CAE41002.1" FT misc_feature 707270..707377 FT /note="Signal peptide predicted for BP0691 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.939 between residues 36 and 37" FT misc_feature 707429..707446 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature 707708..707944 FT /note="HMMPfam hit to PF00034, Cytochrome c" FT misc_feature 707735..707752 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT CDS 708029..709315 FT /transl_table=11 FT /locus_tag="BP0692" FT /product="cytochrome C" FT /note="Similar to Pectobacterium cypripedii cytochrome C FT precursor TR:O34215 (EMBL:U97665) (441 aa) fasta scores: FT E(): 2.7e-35, 41.106% id in 416 aa, and to Acetobacter FT pasteurianus cytochrome C subunit of alcohol dehydrogenase FT TR:Q57536 (EMBL:D13893) (472 aa) fasta scores: E(): FT 2.7e-34, 40.146% id in 411 aa" FT /protein_id="CAE41003.1" FT /translation="MKIIKRVLVVAILALLAAVATLYWLGTRDHVPAGPQAAPATGSAD FT ELVEQGRYLARAGNCMACHTARGGQAYAGGTPIPTPFGTLYGPNITPDAETGIGGWSAD FT DFWQVLHNGKGPGGRLLYPAFPYTEYTRMTRADADALYAFLRTVEPVRQASRPHELASP FT YDQRLLLAAWRALYFEPGGPQADPGQSLQWNRGRYLTEGLGHCAACHTPRNSLGATRAA FT EALGGGMIDGLGWYAPPLTGQPGTGLGDWSAQDIAALLTTGIAPHSTVAGPMAEVVLGS FT TQYLSGDDALAIGTYLKSLPAAASPPARRGAPSATVMELGGKLYGQHCAQCHQADGKGS FT FPAWPALAGNPSVIAAEPANVIRMVLDGGFAPATAANPRPHGMPPFAQALPDNDIAMLV FT SYVRNSWGNQAGAVTPLDVKRTRESGAGR" FT misc_feature 708029..708088 FT /note="Signal peptide predicted for BP0692 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.305 between residues 20 and 21" FT misc_feature 708047..708106 FT /note="1 probable transmembrane helix predicted for BP0692 FT by TMHMM2.0 at aa 7-26" FT misc_feature 708206..708223 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature 708644..708661 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature 708980..709246 FT /note="HMMPfam hit to PF00034, Cytochrome c" FT misc_feature 709013..709030 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT CDS complement(709369..710295) FT /transl_table=11 FT /locus_tag="BP0693" FT /product="Hpr serine kinase/phosphatase" FT /EC_number="2.7.1.-" FT /note="Similar to Bacillus subtilis Hpr(ser) FT kinase/phosphatase HprK or PtsK SW:HPRK_BACSU (O34483) (309 FT aa) fasta scores: E(): 2.3e-34, 36.149% id in 296 aa, and FT to Neisseria meningitidis putative kinase/phosphatase FT nma0947 TR:Q9JV91 (EMBL:AL162754) (320 aa) fasta scores: FT E(): 1.1e-48, 49.505% id in 303 aa" FT /protein_id="CAE41004.1" FT /translation="MLTVQELVDDNADKIPFSWIAGHDAADRAISDDGMAAADLVGHLN FT LIHPSRIQVFGQEELAYYTRFDLRRRMHHMDELLIGGVPAILLADGLTPPQDLIDQCAQ FT HQVPLLSTPVAAAQLIDLLRIYLGKKLAPTTTVHGVFLDVLGLGVLITGESGLGKSELA FT LELISRGHGLVADDAVELSRTAPGVIEGHCPQLLQNLLEVRGLGLLDIRTIFGETSVRR FT KMRLKLIVHLVRATAQDKFERLPLQDITQDMLGLPIRKVMLQVAAGRNLAVLVEAAVRN FT TILKLRGIDTLGEFMERQAMAILQSSK" FT misc_feature complement(709372..710292) FT /note="HMMPfam hit to PF02603, Hpr Serine kinase" FT misc_feature complement(709816..709839) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(710314..710769) FT /transl_table=11 FT /gene="rpoP" FT /gene_synonym="ptsN" FT /locus_tag="BP0694" FT /product="nitrogen regulatory IIA protein" FT /EC_number="2.7.1.69" FT /note="Similar to Escherichia coli nitrogen regulatory IIA FT protein PtsN or RpoP or B3204 SW:PTSN_ECOLI (P31222) (163 FT aa) fasta scores: E(): 6.2e-13, 40.000% id in 120 aa, and FT to Alcaligenes eutrophus hypothetical 16.5 kDa protein FT TR:Q9EX66 (EMBL:AJ131690) (151 aa) fasta scores: E(): FT 1.6e-37, 65.986% id in 147 aa" FT /protein_id="CAE41005.1" FT /translation="MNHLSRILPAGNVVLDMLATSKKRAFEQAGLLFENHHGLARSVVF FT DSLFSRERLGSTALGQGVAVPHGRVKGLDQALAAFIRLAQPIPFDAPDGQPVSMLLCLL FT VPEAATQQHLDILAELAQLMSNKPLREALASETDPAAVHRMLTTGQL" FT misc_feature complement(710509..710640) FT /note="HMMPfam hit to PF00359, FT Phosphoenolpyruvate-dependent sugar phosphotransferase FT system, EIIA 2" FT misc_feature complement(710566..710616) FT /note="ScanRegExp hit to PS00372, PTS EIIA domains FT phosphorylation site signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(join(711046..711273,711276..711386)) FT /pseudo FT /transl_table=11 FT /gene="rpoN" FT /locus_tag="BP0696" FT /product="probable sigma(54) modulation protein FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 37. The frameshift occurs within a FT dimeric tract of (CA)2. The sequence has been checked and FT believed to be correct. Similar to Alcaligenes eutrophus FT probable sigma(54) modulation protein SW:RP5M_ALCEU FT (P28613) (130 aa) fasta scores: E(): 4.3e-18, 50.820% id in FT 122 aa, and to Pseudomonas aeruginosa RpoN TR:Q51562 FT (EMBL:L26916) (103 aa) fasta scores: E(): 3.6e-14, 52.174% FT id in 92 aa" FT /db_xref="PSEUDO:CAE41006.1" FT misc_feature complement(join(711100..711273,711276..711383)) FT /note="HMMPfam hit to PF02482, Sigma 54 modulation protein FT / S30EA ribosomal protein" FT variation complement(711272..711275) FT /note="(CA)2 in pertussis; (CA)1 deleted in parapertussis FT and bronchiseptica" FT CDS complement(711621..712412) FT /transl_table=11 FT /locus_tag="BP0697" FT /product="ABC transporter" FT /note="Similar to Rhizobium leguminosarum ABC-type permease FT homolog TR:Q52785 (EMBL:U23471) (258 aa) fasta scores: E(): FT 3.3e-47, 60.938% id in 256 aa, and to Alcaligenes eutrophus FT hypothetical 28.7 kDa protein TR:Q9EX70 (EMBL:AJ131690) FT (263 aa) fasta scores: E(): 1.6e-57, 69.811% id in 265 aa" FT /protein_id="CAE41007.1" FT /translation="MTDSHATLSTATAAGAAAGSLRATGLRKTYNGRTVVQDVSLSVVS FT GEVVGLLGPNGAGKTTSFYMIVGLVPADSGRIEIDGSNITSMPIHKRARMGLSYLPQDA FT SVFRRLTVEQNIRAVLELQLGPNGKPLPEARIRDNLEALLEELQIGHIRANTAISLSGG FT ERRRVEIARALATSPRFILLDEPFAGVDPIAVIEIQRIVRFLKGRGIGVLITDHNVRET FT LGICDRAYIISEGKVLTDGHPDEIVGDPAVRRVYLGEHFRM" FT misc_feature complement(711708..712277) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(711891..711935) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(712233..712256) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(712344..712412) FT /note="Signal peptide predicted for BP0697 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.962) with cleavage site FT probability 0.565 between residues 23 and 24" FT CDS complement(712444..713064) FT /transl_table=11 FT /locus_tag="BP0698" FT /product="putative exported protein" FT /note="Similar to Escherichia coli protein YhbN precursor FT YhbN or B3200 or Z4563 or Ecs4079 SW:YHBN_ECOLI (P38685) FT (185 aa) fasta scores: E(): 0.19, 28.877% id in 187 aa, and FT to Alcaligenes eutrophus hypothetical 16.9 kDa protein FT TR:Q9EX71 (EMBL:AJ131690) (155 aa) fasta scores: E(): FT 2.3e-09, 37.984% id in 129 aa" FT /protein_id="CAE41008.1" FT /translation="MTHLRLSLAPLRLCSILLLAAAGAAQAQAQSGQAAPAEEPSTLIL FT SDTLHYDDIKRQSIFTGNVILTRGLMTLTSDKLEVNEDAAGNQFGVATADKGKIVTIRQ FT DRPETFELIEGKGLRAEYESSKSQFDLIGQAIVTRYICGKPFDTIRGDRVRYNEKTGIY FT QAQGGPNSSAAGGRVRSLAEPRAKADAAIAECRAKKQAPKKPQ" FT misc_feature complement(712984..713064) FT /note="Signal peptide predicted for BP0698 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.604 between residues 27 and 28" FT CDS complement(713061..713690) FT /transl_table=11 FT /locus_tag="BP0699" FT /product="putative exported protein" FT /note="Similar to Neisseria meningitidis putative FT periplasmic hypothetical protein Nma2133 TR:Q9JSU4 FT (EMBL:AL162758) (193 aa) fasta scores: E(): 0.00062, FT 23.711% id in 194 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa4459 TR:Q9HVV8 (EMBL:AE004860) (190 FT aa) fasta scores: E(): 0.04, 22.989% id in 174 aa" FT /protein_id="CAE41009.1" FT /translation="MKERFPSLIALFLLLALVVGTWWAADYAQRAVQVDPPRRLTHEMD FT SWARDFVMLRTDVQGHPINRLEGVYVEHFPDDDSYHVTTPRAIGQQAGNPITIGVSKTA FT IMEQGGQRIVMNGDTHVHRQPDARNETLDVRSQQLILLPDEDVVFTDLPAQVNKGNSRM FT NGTGMHYNNKTRQLRVSAAADVEIAGTEGRKRQSTETPANSNQNKP" FT misc_feature complement(713607..713690) FT /note="Signal peptide predicted for BP0699 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.508 between residues 28 and 29" FT misc_feature complement(713619..713669) FT /note="1 probable transmembrane helix predicted for BP0699 FT by TMHMM2.0 at aa 7-24" FT CDS complement(713703..714311) FT /transl_table=11 FT /locus_tag="BP0700" FT /product="probable hydrolase" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma2134 TR:Q9JSU3 (EMBL:AL162758) (178 aa) fasta FT scores: E(): 3.7e-25, 44.706% id in 170 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa4458 FT TR:Q9HVV9 (EMBL:AE004860) (179 aa) fasta scores: E(): FT 4.9e-25, 48.428% id in 159 aa" FT /protein_id="CAE41010.1" FT /translation="MTKNSPVSVPHPAEALVLARIPASVRERAAAVRLMVFDVDGVLTD FT GGLYYGEHGEMFKRFHALDGHGLRLLMEGGLKVALITGRSGPIADRRAAELGIAEVLQG FT VRDKGGALSELAQRVGVQLNQTGYMGDDIIDLPAMQRAGFAASVANAPGYVAQAAHWVS FT SQPGGQGAVRECCDLLLAAQGRLGTFLGTPALLGPGAIQ" FT misc_feature complement(713856..714218) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS complement(714308..715297) FT /transl_table=11 FT /locus_tag="BP0701" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli GutQ protein GutQ or FT SrlQ or B2708 SW:GUTQ_ECOLI (P17115) (321 aa) fasta scores: FT E(): 2e-49, 48.438% id in 320 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa4457 TR:Q9HVW0 FT (EMBL:AE004860) (326 aa) fasta scores: E(): 6.5e-60, FT 56.190% id in 315 aa" FT /protein_id="CAE41011.1" FT /translation="MSAHPDPTPEAILASARRTLQTEAQAIADLAARLDDSFVQVVGML FT LACRGRVVVSGIGKTGHIARKLAATLASTGTPAFFVHAAEAIHGDLGMVTRDDVLIAIS FT YSGTGQELLTILPVVRRMGAGLIAITGNAESELARLADVHLDASVSQEACPLNLAPTAS FT TTAALALGDALAVACLEARGFGREDFARSHPGGALGRRLLTHVRDVMRHGPALPIVAED FT APLPRALEEISAKGMGMTAVVDAQRKPVGIFTDGDLRRLIERVGDIRSLTVADGMTRAP FT RTIGPDALAAEAAQQMDDRRLNQMLVVDTAGVLIGALHTHDLMAAKVV" FT misc_feature complement(714314..714475) FT /note="HMMPfam hit to PF00571, CBS domain" FT misc_feature complement(714509..714670) FT /note="HMMPfam hit to PF00571, CBS domain" FT misc_feature complement(714767..715171) FT /note="HMMPfam hit to PF01380, SIS domain" FT CDS 715403..716617 FT /transl_table=11 FT /gene="purT" FT /locus_tag="BP0702" FT /product="phosphoribosylglycinamide formyltransferase 2" FT /EC_number="2.1.2.-" FT /note="Similar to Escherichia coli FT phosphoribosylglycinamide formyltransferase 2 PurT or B1849 FT SW:PURT_ECOLI (P33221) (391 aa) fasta scores: E(): 1.7e-87, FT 63.409% id in 399 aa, and to Pseudomonas aeruginosa FT phosphoribosylglycinamide formyltransferase 2 PurT or FT Pa3751 TR:Q9HXP3 (EMBL:AE004794) (393 aa) fasta scores: FT E(): 9.7e-93, 67.424% id in 396 aa" FT /protein_id="CAE41012.1" FT /translation="MSTFPAPVLGTPLSPTATRVMLLGAGELGKEVVIALQRLGVEVIA FT VDRYADAPGHQVAHRAHVVSMTDPQALRQVIEQERPHVVVPEIEAIATDLLVALEDEGA FT VHVTPTARAAHLTMNREGIRRLAAETLGLPTSPYRFVDTEQALREAIDGGIGYPCVIKP FT VMSSSGKGQSIIRSADDIAAAWRYAQEGGRVGAGRVIVEGFIEFDYEITLLTVRARGAD FT GQIVTQFCEPIGHRQVDGDYVESWQPHPMSPVALQRSREIALAVTGDLGGLGIFGVELF FT VAGDQVWFSEVSPRPHDTGMVTLISQVQNEFELHARALLGLPVDTRLRQPGASSVIYGG FT VDARGVAFEGVAQALAEPGTDIRLFGKPESYAKRRMGVGLAVADDVDQARAKAARVSQA FT VRVRA" FT misc_feature 715538..716050 FT /note="HMMPfam hit to PF02222, ATP-grasp domain" FT CDS 716754..718487 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0703" FT /product="N-terminal region of TonB dependent receptor FT protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP0257. Similar to Salmonella typhimurium ferrichrome iron FT receptor FhuA TR:O86925 (EMBL:Y14025) (729 aa) fasta FT scores: E(): 3.6e-19, 25.738% id in 610 aa, and to FT Pseudomonas SpBG33R. ferrisiderophore receptor-like protein FT TR:Q9RC04 (EMBL:AF153707) (691 aa) fasta scores: E(): FT 1.2e-118, 56.469% id in 572 aa. Similar to BP1962 (30.179% FT identity in 613 aa overlap)" FT /db_xref="PSEUDO:CAE41013.1" FT misc_feature 716754..716837 FT /note="Signal peptide predicted for BP0703 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.938 between residues 28 and 29" FT repeat_region 718467..718498 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 718467..719519 FT CDS 718569..719519 FT /transl_table=11 FT /locus_tag="BP0704" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41014.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAHALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 718827..718892 FT /note="Predicted helix-turn-helix motif with score 2363 FT (+7.24 SD) at aa 87-108, sequence LTQARIAHALGVSASTVSRVLA" FT misc_feature 718950..719483 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(719488..719519) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 719519..720826 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0705" FT /product="putative C-terminal region of dehydrogenase FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. This is the C-terminal region of BP3209. FT Similar to Escherichia coli choline dehydrogenase BetA or FT B0311 SW:BETA_ECOLI (P17444) (556 aa) fasta scores: E(): FT 1.2e-51, 40.515% id in 427 aa, and to Pseudomonas FT aeruginosa probable Gmc-type oxidoreductase Pa3710 FT TR:Q9HXT1 (EMBL:AE004790) (557 aa) fasta scores: E(): FT 1.3e-107, 65.367% id in 436 aa. The N-terminal part of this FT partial CDS is BP3209." FT misc_feature 719567..720790 FT /note="HMMPfam hit to PF00732, GMC oxidoreductase" FT CDS 720953..722239 FT /transl_table=11 FT /locus_tag="BP0706" FT /product="putative membrane protein" FT /note="Similar to Roseateles depolymerans Orf428 protein FT TR:Q9F206 (EMBL:AB028938) (428 aa) fasta scores: E(): FT 7.6e-89, 58.080% id in 427 aa, and to Xylella fastidiosa FT hypothetical protein Xf0042 TR:Q9PHA2 (EMBL:AE003858) (420 FT aa) fasta scores: E(): 4.2e-44, 53.682% id in 421 aa" FT /protein_id="CAE41016.1" FT /translation="MPHAIEIVATLLFSVAVLHTFSVPFFARLAHRNGPHAGVWHLLSE FT VEAVFGVWAFVLIACMALMAGTDRAVQYMDTRNFTEPLFVFAIMVVASSRPILELVGSV FT VRLLAAMVPIRRELATFFIVMSIVPLGGSFITEPAAMTLAAILLRDGYFRCSGRAGFKY FT MTLGVLFVNVSIGGVLTSYAAPPVLMVAATFGWDTAYMATHFGWRAAVAVFLNAGVLTM FT LCRQALLEGAVGTGAGVNASGDASEKRPPVPAPVTLMHLAFLVGIVLTAHHPAVFLGML FT MMFIGFAHAYQRHQSRLMIREGLMVGFFLAGLVVLGGLQKWWLQDLLGGLEPTVLFWGA FT TALTAITDNAALTYLGSLVEGTSEAWRYMLVAGAVTGGGLTVIANAPNPAGFAILGKYF FT PDGSISSGRLFIAALVPTLVAAAMFMLPV" FT misc_feature join(720962..721030,721073..721141,721199..721267, FT 721325..721393,721454..721522,721739..721807, FT 721844..721912,721955..722023,722060..722128, FT 722171..722230) FT /note="10 probable transmembrane helices predicted for FT BP0706 by TMHMM2.0 at aa 21-43, 58-80, 100-122, 142-164, FT 185-207, 280-302, 315-337, 352-374, 387-409 and 424-443" FT CDS 722405..722713 FT /transl_table=11 FT /locus_tag="BP0707" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical 10.8 FT kDa protein Sce22.04 TR:Q9KYV8 (EMBL:AL355832) (110 aa) FT fasta scores: E(): 2.8e-07, 34.653% id in 101 aa, and to FT Mycobacterium leprae hypothetical ser-rich C-terminus FT protein Ml0180 TR:Q9CD66 (EMBL:AL583917) (99 aa) fasta FT scores: E(): 9.8e-05, 32.673% id in 101 aa" FT /protein_id="CAE41017.1" FT /translation="MPIYAYKCSACGHAEDVLQKISDAPLADCPACGQSTYSKQVTAAG FT FQLKGSGWYVTDFRNNNGAGKPAAGQSAAPAASGGDAGGASASAATPAPAAPAATST" FT CDS 722714..723379 FT /transl_table=11 FT /locus_tag="BP0708" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis putative integral FT membrane protein Nma2020 TR:Q9JT22 (EMBL:AL162757) (245 aa) FT fasta scores: E(): 1.3e-33, 47.143% id in 210 aa, and to FT Rhizobium meliloti hypothetical transmembrane protein FT Smc00229 TR:CAC46233 (EMBL:AL591788) (230 aa) fasta scores: FT E(): 3.8e-26, 41.627% id in 209 aa" FT /protein_id="CAE41018.1" FT /translation="MRHSVMRVFKKYFITGLLIWVPLAITVWVLGLLVATLEGFVPGFL FT SSQSLFGVDIPGFRFVLVITVVLLTGVFAANLLGRSLLEHWERILGRIPLVRSIYNSVK FT QVSDTVLAPNGRAFRQAVLIQYPRAGSWTIAFLTGTPSGEVASYLPGEHLSVYVPTTPN FT PTSGFFLMMPRDQVIDLQMSVDAALKYIVSMGVVAPADRRPVSPPTTPGAPLAPGAEP" FT misc_feature 722729..722869 FT /note="Signal peptide predicted for BP0708 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.871) with cleavage site FT probability 0.441 between residues 47 and 48" FT misc_feature join(722747..722815,722882..722950) FT /note="2 probable transmembrane helices predicted for FT BP0708 by TMHMM2.0 at aa 7-29 and 52-74" FT CDS 723420..725210 FT /transl_table=11 FT /gene="aspS" FT /gene_synonym="tls" FT /locus_tag="BP0709" FT /product="aspartyl-tRNA synthetase" FT /EC_number="6.1.1.12" FT /note="Similar to Escherichia coli aspartyl-tRNA synthetase FT AspS or Tls or B1866 SW:SYD_ECOLI (P21889) (590 aa) fasta FT scores: E(): 1.7e-138, 58.179% id in 593 aa, and to FT Neisseria meningitidis aspartyl-tRNA synthetase Nmb0466 FT TR:Q9K0U5 (EMBL:AE002403) (602 aa) fasta scores: E(): FT 2.1e-173, 70.252% id in 595 aa" FT /protein_id="CAE41019.1" FT /translation="MRTCYTGQVCRDHLGQTVTLYGWVNRRRDHGGVIFIDLRDRTGLA FT QIVFDPDNAEAFGTAERLRNEFCISITGLVRLRPEGTANAELASGEVEVLCQQVEILNA FT SVTPPFQLDDDNLSETTRLTHRVLDLRRPQMQHNLMLRYRVSIEVRKYLDQLGFIDIET FT PMLTKSTPEGARDYLVPSRVNAGYFFALPQSPQLFKQMLMVSGFDRYYQITKCFRDEDL FT RADRQPEFTQIDCETSFLNEVEIREIFEGMIRHVFKVVQDVDLPTPFPIMSWTEAMQRY FT GSDKPDLRVNLEFTDMTDVMRDVDFKVFASAATTAGSRVVALRVQGGGEMSRSEIDAYT FT QFVGIYGAKGLAYIKVNDVAKGREGLQSPIVKNLHDAALAELVKRTGAQNGDIIFFGAD FT RAKVVNDAIGALRVKIGHSEFGKKAGLFSGGWKPLWVVDFPMFEYDEEENRYTAAHHPF FT TSPKDGHEDFLESDPGKAVAKAYDMVLNGWEIGGGSVRIHREEVQSKVFRALKIDAEEA FT REKFGFLLDALQYGAPPHGGIAFGLDRIITMMAGAESIRDVIAFPKTQRAQCLLTGAPS FT EVDEKQLRELHIRLRNVEVK" FT misc_feature 723471..723725 FT /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding FT domain" FT misc_feature 723771..725117 FT /note="HMMPfam hit to PF00152, tRNA synthetases class II FT (D, K and N)" FT misc_feature 724068..724121 FT /note="ScanRegExp hit to PS00179, Aminoacyl-transfer RNA FT synthetases class-II signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 725034..725063 FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT CDS 725323..726183 FT /transl_table=11 FT /locus_tag="BP0710" FT /product="putative endonuclease/exonuclease/phosphatase FT family protein" FT /note="Similar to Escherichia coli hypothetical protein FT YbhP or B0790 or Z1009 or Ecs0868 SW:YBHP_ECOLI (P75772) FT (253 aa) fasta scores: E(): 2.3e-20, 36.426% id in 291 aa, FT and to Pseudomonas aeruginosa hypothetical protein Pa2156 FT TR:Q9I1V9 (EMBL:AE004642) (245 aa) fasta scores: E(): FT 4.6e-20, 37.457% id in 291 aa. Also similar to BP1340, FT 37.801% identity (46.610% ungapped) in 291 aa overlap." FT /protein_id="CAE41020.1" FT /translation="MSLIRVVSYNIHKGRSALGRRESLNDLRLGLYGLRPDLVFLQEVQ FT GRNEVSSVLHAQHESLAAALRLQAAYGRNAIRTGTDHGNALLSRFDILDHENQDISDHR FT LEQRGLLHARIDVGGTEVHCFVVHLGLFAGSRGRQIQALTDRIRQSVPDGAPLLIVGDF FT NDWGDRLAPMFVQQLGLYEVFSHAPRSHGGDLPRLRDSVRRLGNVLRGVPNSVAVLERN FT NQLGMGGAYCPLPPPRTFPAVFPWFRLDRIYQRGFAVRSARVLRGREWARLSDHSPLLA FT ELELP" FT CDS 726180..727385 FT /transl_table=11 FT /locus_tag="BP0711" FT /product="putative phospholipase" FT /note="Similar to Escherichia coli cardiolipin synthetase FT Cls or Nov or B1249 SW:CLS_ECOLI (P31071) (486 aa) fasta FT scores: E(): 2.8e-13, 28.378% id in 370 aa, and to FT Escherichia coli hypothetical protein YbhO or B0789 or FT Z1008 or Ecs0867 SW:YBHO_ECOLI (P75771) (413 aa) fasta FT scores: E(): 9.9e-28, 38.265% id in 392 aa" FT /protein_id="CAE41021.1" FT /translation="MKAQIVRLHWTDGNAIRLLQNGGDFFPALCEAIDAARLSVHMETY FT IFLLDRTGRQMLECLESAARRGVKVRVVLDGFGSAGTAETIRLRITQAGGQCRIFRPEP FT RWLGHLAFSRSRLRRLHRKVAVVDAELAFVGGINIVDDYDDLDPGDDIPAPRFDFAVAV FT QGPLVPHILYAQDLLWVRLNWARLRRHPGDWMRLFKPVHADASPAGKLRAALLLRDNLR FT FRQTFEQAYLYGIQHARRDILIANAYFFPGHQFRKSLMQAAARGVRVRLLLQGKPEYRM FT QYFATRALYDRLLRGGIEIYEYMPGYLHAKVAVIDNMATVGSSNLDPFSLLLAREANVV FT VDDQPFAWDLQERLERAIALGGQFIRPLDYQRRGWLRRCVDVAAYTMLRIGVALTGRAG FT RY" FT misc_feature 726525..726608 FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif" FT misc_feature 727089..727169 FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif" FT CDS complement(727382..728266) FT /transl_table=11 FT /locus_tag="BP0712" FT /product="putative membrane protein" FT /note="Similar to Vibrio cholerae hypothetical protein FT Vca0090 TR:Q9KN75 (EMBL:AE004352) (297 aa) fasta scores: FT E(): 9.3e-45, 47.887% id in 284 aa, and to Rhizobium loti FT Mlr1585 protein TR:Q98K88 (EMBL:AP002997) (305 aa) fasta FT scores: E(): 4.8e-22, 34.343% id in 297 aa" FT /protein_id="CAE41022.1" FT /translation="MPRRDLLDLLALAAVWGGSFLFMRVAVPEFGPAALMELRVGLAAL FT FLLPLALWRGKPALIARHWKAILVVGTLNSALPFLLYAYAAQSLGAGFLSVANAVTPVW FT GAVIGWLWLGDRLPRMRALGLLISLSGIIVLVWDKLDFHDGGTGPAVLAAISAPVFYGM FT AANWTKRYLGHVDALTNATGSMVAASLVLAPLAIIHWPEQAVSFEAWRATVLLAIVCTG FT AAYIVFFRLIARVGPTAAVSVTFLVPVFGVLWGVWFLDEAVTPRILAGAGVILVGTALA FT LGLVGARRVAAAD" FT misc_feature complement(join(727412..727477,727493..727549, FT 727571..727636,727667..727732,727772..727825, FT 727856..727906,727928..727993,728009..728074, FT 728111..728176,728189..728245)) FT /note="10 probable transmembrane helices predicted for FT BP0712 by TMHMM2.0 at aa 7-26, 30-52, 64-86, 91-113, FT 120-137, 147-165, 178-200, 210-232, 239-258 and 263-285" FT misc_feature complement(727418..727792) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature complement(727856..728227) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT CDS complement(join(728282..728758,728776..729744)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0713" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 323. The frameshift occurs within FT a dimeric tract of (TGGATTAt/cTCCCCGAGC)2. The sequence has FT been checked and believed to be correct. Similar to FT Burkholderia cepacia major facilitator superfamily FT transporter homolog OrfD TR:Q9RPH2 (EMBL:AF158699) (531 aa) FT fasta scores: E(): 1e-57, 41.492% id in 429 aa, and to FT Rhizobium loti Mlr6842 protein Mlr6842 TR:Q987Z4 FT (EMBL:AP003010) (529 aa) fasta scores: E(): 7.2e-38, FT 32.353% id in 442 aa" FT /db_xref="PSEUDO:CAE41023.1" FT misc_feature complement(join(728327..728383,728414..728479, FT 728516..728581,728594..728659)) FT /note="4 probable transmembrane helices predicted for FT BP0713 by TMHMM2.0 at aa 24-46, 50-72, 84-106 and 116-135" FT variation complement(728759..728792) FT /note="(TGGATTA(c/t)TCCCCGAGC)2 in pertussis; FT (TGGATTAcTCgCCGAGC)1 in parapertussis and bronchiseptica" FT misc_feature complement(join(728806..728871,728935..729000, FT 729031..729087,729127..729192,729208..729273, FT 729313..729378,729391..729447,729487..729552, FT 729583..729648)) FT /note="9 probable transmembrane helices predicted for FT BP0714 by TMHMM2.0 at aa 32-54, 64-86, 99-118, 122-144, FT 157-179, 184-206, 219-238, 248-270 and 291-313" FT CDS complement(729783..730235) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0715" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Pseudomonas carboxydovorans FT CoxG protein TR:Q9KX24 (EMBL:X82447) (205 aa) fasta scores: FT E(): 3.9e-07, 32.877% id in 146 aa, and to Rhizobium FT meliloti conserved hypothetical protein Smc01132 FT TR:CAC41825 (EMBL:AL591783) (152 aa) fasta scores: E(): FT 3e-08, 38.393% id in 112 aa" FT misc_feature complement(729789..729845) FT /note="1 probable transmembrane helix predicted for BP0715 FT by TMHMM2.0 at aa 118-137" FT CDS complement(730180..731178) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0716" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. Transposase for IS481 element. The FT transposase lacks a stop codon, hence it is extended by 15 FT aa at its C-terminus" FT /db_xref="PSEUDO:CAE41025.1" FT repeat_region 730229..730259 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(730229..731280) FT misc_feature complement(730264..730797) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(731249..731280) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(731338..732210) FT /transl_table=11 FT /locus_tag="BP0718" FT /product="carboxyvinyl-carboxyphosphonate phosphorylmutase" FT /EC_number="2.7.8.23" FT /note="Similar to Streptomyces hygroscopicus FT carboxyvinyl-carboxyphosphonate phosphorylmutase BcpA FT SW:CPPM_STRHY (P11435) (294 aa) fasta scores: E(): 2.5e-36, FT 39.789% id in 284 aa, and to Sulfolobus solfataricus FT carboxyphosphonoenolpyruvate phosphonomutase PrpB TR:Q97VN2 FT (EMBL:AE006855) (285 aa) fasta scores: E(): 1e-39, 46.099% FT id in 282 aa" FT /protein_id="CAE41026.1" FT /translation="MSNSTKRVLRERVAQRNGMLVAGAFNAMSARIVADQGFEAVYLTG FT AGLTNMHYGAPDLGIIGLRDVADATSRIRDAVELPLIVDADTGFGNAVNVWHTVRVLER FT AGADAIQLEDQVFPKRCGHFAGKSVAPLSEMVSKIKAAADARRDEDFLIIARTDARAVE FT GFDAAIERARRFAEAGADILFVEAIVDQDEVGKLPQLLSQPLLVNIVVGGKTPPMPAAQ FT LGRLGYSVVLYANATLQGAVLGMQRALGALRRDGKLDEDPALLAPFLERQRLVGKPLYD FT ELEERYKDA" FT misc_feature complement(731728..731976) FT /note="HMMPfam hit to PF00463, Isocitrate lyase family" FT misc_feature complement(732109..732210) FT /note="Signal peptide predicted for BP0718 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.731) with cleavage site FT probability 0.411 between residues 34 and 35" FT CDS 732551..732769 FT /transl_table=11 FT /locus_tag="BP0720" FT /product="conserved hypothetical protein" FT /note="Similar to Thermoplasma volcanium Tvg1306680 protein FT TR:Q978Z7 (EMBL:AP000996) (64 aa) fasta scores: E(): 7.1, FT 33.333% id in 48 aa, and to Agrobacterium tumefaciens FT Agr_c_4413p TR:AAK88168 (EMBL:AE008157) (121 aa) fasta FT scores: E(): 1.3e-13, 59.375% id in 64 aa" FT /protein_id="CAE41027.1" FT /translation="MSRKYIDCREFPSEMNCSVALSADSDAELLEAAVQHATTVHKHAD FT TPELRAQLKTMFHEGTPPLAAQAGSRA" FT CDS complement(732809..734188) FT /transl_table=11 FT /locus_tag="BP0721" FT /product="probable aminotransferase" FT /note="Similar to Bilophila wadsworthia taurine:pyruvate FT aminotransferase TR:Q9APM5 (EMBL:AF269146) (456 aa) fasta FT scores: E(): 9.3e-99, 54.000% id in 450 aa, and to Bacillus FT subtilis probable aminotransferase YhxA SW:YHXA_BACSU FT (P33189) (450 aa) fasta scores: E(): 7.4e-62, 37.418% id in FT 457 aa" FT /protein_id="CAE41028.1" FT /translation="MNDLATINDLHSVVEDDRNAIWHHMLQHDALQATAPWVVVEGKGT FT RIRDASGKEYLDATAGGFWTVNVGYGRERIANAMRDQMLKLNYFAQSAGNVPGALFARQ FT LVSKMPGMSRVYFSNSGSEANEKVFKMVRQISARHHAGRKYKILFRERDYHGSSIATLA FT AAGQPERAAQYGPFPDGFVQVPHCLEYRKQWDVANYGERAADAIEEVILREGPETVGLL FT CLEPITAGGGIIVPPEGYWRRVQEICRRYDVLLHIDEVVCGLGRTGKWFGYQHFDIEPD FT FVTLAKGTASGYAAIACTVTHERIFEQFKDEPDDPLSFFRDVSTFGGCAGSAAAALENL FT RILEEEGLVEHAAQVGDYLQACLRQLADKHAVIGDVRGKGLLQGVELVSDRAAKTPVSE FT ADAKRVVAQCKAQGVLIGVITRALPGLNTTLCLAPPLILTRDEVDELCGAIDRALATVF FT G" FT misc_feature complement(732911..734059) FT /note="HMMPfam hit to PF00202, Aminotransferase class-III" FT CDS complement(734230..735627) FT /transl_table=11 FT /locus_tag="BP0722" FT /product="probable amidase" FT /note="Similar to Bradyrhizobium japonicum indoleacetamide FT hydrolase Bam SW:HYIN_BRAJA (P19922) (465 aa) fasta scores: FT E(): 2.6e-45, 39.409% id in 406 aa, and to Streptomyces FT spR1128 enantiomer selective amidase ZhuL TR:Q9F6D0 FT (EMBL:AF293442) (507 aa) fasta scores: E(): 3.5e-27, FT 33.407% id in 452 aa" FT /protein_id="CAE41029.1" FT /translation="MTSELWRLSACEIVAGVKSGAFSASEAVRAALDRMEAVNGRINAV FT VDSDPQAALAAAARVDARIAAGEDPGPLAGVPVTVKVTHDQAGFATTMGIRKLKDHRAA FT ANSPIVDNFERAGAIPIGRTNMPAFGLRWFTNGRLHGDTYNPFDRSLTPGGSSGGASAA FT VASGIGAIAHGTDIAGSIRYPAYACGVHGLRPTLGRIPNYNASFPERGLGGQLMSVSGP FT LARTVADIELSFAALAHADPRDPWWVPAPLAGPARPRRVALCLRPDGLEIDAAVADALL FT DAAARLRDAGWEVAELDDIPPMRDAAVAQVTLWLGDEYPALLAEAQAEGDPGALAMLRG FT QPQSAGVTLQSYCSALKARASYLRQWMLFFEDYPLMMLPVSARLTFANDLDTRSAADYD FT SVWEAQMPQLGLAFMGLPCMSVATGMCGSAPVGIQLAAGRYREDLLFLAAEDIAARGMP FT PVPVDPV" FT misc_feature complement(734722..735552) FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature complement(735073..735168) FT /note="ScanRegExp hit to PS00571, Amidases signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS complement(735667..737319) FT /transl_table=11 FT /locus_tag="BP0723" FT /product="probable ABC transporter, ATP-binding protein" FT /note="Similar to Rhizobium meliloti probable ABC FT transporter, ATP-binding protein Sma1434 TR:AAK65441 FT (EMBL:AE007265) (550 aa) fasta scores: E(): 1e-76, 46.125% FT id in 542 aa, and to Agrobacterium tumefaciens Agr_l_3504p FT TR:AAK90329 (EMBL:AE008378) (575 aa) fasta scores: E(): FT 7.1e-84, 48.780% id in 533 aa" FT /protein_id="CAE41030.1" FT /translation="MIFRKRDLQHRPVVLRIAGLSLVDGQPGAGSAILRDIDVDIRQGE FT TVCLVGESGSGKSMTSLAVMGLLPKGHLRVTGGRIELDGQNLLDLGPAALRDLRAKRIS FT MIFQEPMTALNPVMKVGPQIEEVLDSHTALPRREKKQRVLDIMEQVHLPDVARIYESYP FT HQLSGGQRQRIMIAMALVLEPRLLIADEPTTALDVTTQNQVLKLISELQHKHDTAVLFI FT THDMGVVAEIADRVYVMRLGEIVESAPVEQLLREPRQDYTRKLLKSVPSLIPRPGRAAP FT QACATLQVQGLAKRYAMGGFPGRRREVQAAHDVAFSIQPGRTLGIVGESGSGKSTVARC FT VMRLIEPSEGAIRVGDADIARLGPRQLKPFRKHLQIVFQDPYRSLNPRRTIGASLIEGP FT VNFGQDRQAALAQAAELLELVGLPADALARYPHQFSGGQRQRIAIARAIAMRPDVLVAD FT EAVSALDVSVQAQVLELLDTLQRKLDIAILFITHDLRVAAQICDEVMVMRHGRVVEHDT FT AENVLARPAHAYTRALIEAAPGRDWDFANFRER" FT misc_feature complement(735790..736359) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(735976..736020) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(736315..736338) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(736594..737190) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(736780..736824) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(737146..737169) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(737323..738207) FT /transl_table=11 FT /locus_tag="BP0724" FT /product="probable ABC transporter, permease protein" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter permease protein Y4tQ SW:Y4TQ_RHISN (Q53192) FT (291 aa) fasta scores: E(): 1.4e-52, 53.307% id in 257 aa, FT and to Rhizobium loti ABC transporter, permease protein FT mlr6290 TR:Q989T2 (EMBL:AP003008) (280 aa) fasta scores: FT E(): 5.7e-46, 47.547% id in 265 aa. Also similar to several FT B. pertussis CDSs such as BP3161 (57.348% identity in 279 FT aa overlap), BP1825 (57.977% identity in 257 aa overlap), FT BP3459 (55.725% identity in 262 aa overlap), P2592 (40.304% FT identity in 263 aa overlap)" FT /protein_id="CAE41031.1" FT /translation="MTTLPQPASALQAVFRVTQLPAWCRFGWPPIAAALVLAVLVLATA FT AAYLYIPHDPIAINPLMRLKPASADHWLGTDALGRDVFSRVMAGGQVSLLVGVAAAVIS FT IAAGLCIGLVSGFFRVLDGVVMRITDAVMSVPSILLAIALVALNGPSIWSVIIAITVPE FT VPRVVRLVRSVVLSAREEPYVEAALALGTSMPGILWRHIMPNTLAPLMVQATYVCASAI FT LTEAVLSFLGAGVSTEIPTWGNIMAEARMYFQIRPGLMLWPGLLLSLCILSINLLGDTA FT RDMLDPRLKRRGE" FT misc_feature complement(join(737374..737430,737491..737556, FT 737731..737796,737857..737922,738052..738117)) FT /note="5 probable transmembrane helices predicted for FT BP0724 by TMHMM2.0 at aa 30-52, 95-117, 137-159, 217-239 FT and 259-278" FT misc_feature complement(737464..737685) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(737596..737682) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign." FT CDS complement(738207..739148) FT /transl_table=11 FT /locus_tag="BP0725" FT /product="probable ABC transporter, permease protein" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter permease protein Y4tP SW:Y4TP_RHISN (Q53191) FT (313 aa) fasta scores: E(): 3.2e-65, 54.839% id in 310 aa, FT and to Rhizobium loti ABC transporter, permease protein FT Mlr6289 TR:Q989T3 (EMBL:AP003008) (314 aa) fasta scores: FT E(): 5e-52, 47.284% id in 313 aa. Also similar to several FT B. pertussis CDSs such as BP3160 (58.147% identity in 313 FT aa overlap), BP3458 (54.633% identity in 313 aa overlap), FT BP1824 (53.922% identity in 306 aa overlap), BP2395 FT (44.268% identity in 314 aa overlap), and BP2691 (40.256% FT identity in 313 aa overlap)" FT /protein_id="CAE41032.1" FT /translation="MFGYILRRVLATIPVVVIVAVFVFLLLRLTPGDAAAIIAGDSATP FT AQIENIRKSLGLTEPLTVQFRTWMTQLASGDLGTSIISRQPVTKLIGQRVGPTLQIATL FT TIILSVLIAVPLGVLAAWRHRSWLDYAVMAFSVIGFSIPAFVVGYILMKIFAVDLRWLP FT VQGFTSVFQDPQQFLCTAVLPCMTLATVFVALIARMTRASMLDVLGEDYIRTARAKGVK FT ERIVLFRHALGNAAVPIVTIIGTGFALLIVGVVVTESVYNIPGIGRLTVDAVLARDYPV FT IQAMILLTSALYVFINLLIDLSYTIFDPRIRY" FT misc_feature complement(join(738228..738293,738387..738452, FT 738561..738617,738678..738743,738783..738848, FT 739068..739133)) FT /note="6 probable transmembrane helices predicted for FT BP0725 by TMHMM2.0 at aa 5-27, 100-122, 135-157, 177-196, FT 232-254 and 285-307" FT misc_feature complement(738324..738539) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS complement(739227..740846) FT /transl_table=11 FT /locus_tag="BP0726" FT /product="probable ABC transporter, periplasmic binding FT protein" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter periplasmic binding protein Y4tO precursor FT SW:Y4TO_RHISN (P55669) (531 aa) fasta scores: E(): 5.6e-64, FT 37.786% id in 524 aa, and to Bradyrhizobium japonicum FT putative ABC transporter TR:Q9RH65 (EMBL:AF065159) (516 aa) FT fasta scores: E(): 1.1e-62, 37.670% id in 515 aa" FT /protein_id="CAE41033.1" FT /translation="MFIARNAADPAVKIRAGARLAAVAAALCGLAATVPAAAQAPKTVT FT AVMHSGLRVLDPIITTAHITRNHGYMIYDVLVSMDKDFNVRPQMADFSVSPDGLTYTFT FT LRENLWFHDGAPVTAADVVASLKRWGERDTGGQHIFDQTESLAATDARTITWKLSKPFG FT PMLETLGKQSTVPPFIMPKRVARTPSSEAITDYTGSGPFRFVLDEFSPGVKVAYAKFDK FT YVPRNEPANWMAGGKVVKVDRANWVTMPDAQTAVSALSSGEIDYLEQTPTDLLPILESN FT ADVVLEVRDQLGYQALGRMNFKQPPFNDKRIRQAALKAMSQEPILAAMVGNPKYYQVCG FT AVLGCGTPLASEAGAGALTGKGDVEGARALLKEAGYDGSPVVILQPTDVPILAAPPLVA FT AQQLRAAGFKVDLQPMDWQTLVTRRTNKGAPSQGGWSMFFSYWMVPEVTTPLINATLNA FT RGDEGFFGWAQDPELEAMRGEYITAGSPQAQLDVAKRIQARVMDEVTYLPLGQFQTVQG FT RRANLVDIIASPVPVFWQMDKK" FT misc_feature complement(739902..740132) FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT misc_feature complement(740463..740795) FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT misc_feature complement(740730..740786) FT /note="1 probable transmembrane helix predicted for BP0726 FT by TMHMM2.0 at aa 20-39" FT misc_feature complement(740733..740846) FT /note="Signal peptide predicted for BP0726 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.895 between residues 38 and 39" FT CDS 741013..741828 FT /transl_table=11 FT /locus_tag="BP0727" FT /product="probable transcriptional regulator" FT /note="Similar to Rhodococcus opacus putative regulator of FT catechol degradative operon CatR TR:O33539 (EMBL:X99622) FT (256 aa) fasta scores: E(): 1.1e-17, 33.468% id in 248 aa, FT and to Alcaligenes eutrophus hypothetical 30.8 kDa protein FT TR:Q9L789 (EMBL:AF225972) (279 aa) fasta scores: E(): FT 3.4e-22, 33.871% id in 248 aa" FT /protein_id="CAE41034.1" FT /translation="MRRSIVNSELGVRSPTEEELEDPLFVQAAARTLQVLSAFHRAVRP FT MSLDEIAEASGVGRSSTQRILNTLRVLGYVERSDGGRGYVPGIRILDHALDYLRLNTLI FT SRASPVLLDLRRNALERVDLSVFDDLRLVYASRLQSKRETFFATLVGHSVPTFCTAGGR FT AILSHLPGAEVDDIIARSDRAPFTDKTITALREIRKKVEQARVSGYAVTIEEVLVGEIG FT IGVAVLGADGRPVGAIHIAGSLSEWTPEAFTARFAPLAVEAATAINRLS" FT misc_feature 741148..741213 FT /note="Predicted helix-turn-helix motif with score 1461 FT (+4.16 SD) at aa 46-67, sequence MSLDEIAEASGVGRSSTQRILN" FT misc_feature 741262..741822 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS complement(741896..742465) FT /transl_table=11 FT /locus_tag="BP0728" FT /product="probable transcriptional regulator" FT /note="Similar to Streptomyces roseosporus TetR homologue FT WhiR TR:P72569 (EMBL:U58281) (179 aa) fasta scores: E(): FT 0.00038, 28.814% id in 118 aa, and to Pseudomonas FT aeruginosa probable transcriptional regulator Pa1283 FT TR:Q9I461 (EMBL:AE004558) (186 aa) fasta scores: E(): FT 8.1e-17, 32.973% id in 185 aa. IS481 inserted immediately FT upstream of the start codon. It is not clear whether this FT insertion has any effect on the expression of this gene" FT /protein_id="CAE41035.1" FT /translation="MVRPRTIDRERLLDIAESIISEAGAVTISFGGLAEAAGLSKASVQ FT SVFGTREAMMEALLERWLRKEQRAYQKKIGPQSSLRERVRRHVKITGKESSEANSRLAA FT VLTALVGSDATEGVMAKWYASRVGKFSAETQEERLLRIAFLAAEGAFFMRHVAGFPMSD FT RLWRELFHDLLDFVAEPVGGAARSAA" FT misc_feature complement(742319..742384) FT /note="Predicted helix-turn-helix motif with score 1201 FT (+3.28 SD) at aa 28-49, sequence ISFGGLAEAAGLSKASVQSVFG" FT CDS complement(742466..743416) FT /transl_table=11 FT /locus_tag="BP0729" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41036.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 742466..742497 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(742466..743518) FT misc_feature complement(742502..743035) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(743093..743158) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(743487..743518) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 744071..745168 FT /transl_table=11 FT /gene="nspC" FT /locus_tag="BP0731" FT /product="carboxynorspermidine decarboxylase" FT /note="Similar to Vibrio alginolyticus carboxynorspermidine FT decarboxylase NspC TR:Q56575 (EMBL:D31783) (377 aa) fasta FT scores: E(): 1.4e-71, 52.291% id in 371 aa, and to FT Rhizobium meliloti putative carboxynorspermidine FT decarboxylase protein TR:CAC49950 (EMBL:AL603647) (365 aa) FT fasta scores: E(): 6.7e-103, 69.041% id in 365 aa" FT /protein_id="CAE41037.1" FT /translation="MLKTPYYLIDKRALLQNLEVIRRIRERSGAKVLLALKCFATWSVF FT DLMREYMDGTTSSSLFEVRLGREKFGGETHAYSVAYAEDDIDDVVACADKIIFNSLSQL FT ERYAPRASAIPRGLRLNPGISVSGYDLANPARPFSRLGETDLDRIAQAMPMIDGFMVHN FT NCENRDFTRFDALLTELEHRYGHLLGQINWISLGGGIHFTEPGYALDAFCDRLRRFSEQ FT YGVQVYLEPGEAAITNTATLEVTVLDVMRNEKNLAIVDAATEAHMLDLLIYRMSARVQP FT DQGPHRYVIYGNSCLAGDVFGEFSFESPLQPGSRISIQDAAGYTMVKKNWFNGVRMPAI FT AIRELDGEIRLVREFGYQDYVDSLS" FT CDS 745202..746467 FT /transl_table=11 FT /locus_tag="BP0732" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smb21630 TR:CAC49949 (EMBL:AL603647) (413 aa) fasta FT scores: E(): 2.6e-117, 67.317% id in 410 aa, and to FT Agrobacterium tumefaciens Agr_l_1365p TR:AAK89265 FT (EMBL:AE008267) (412 aa) fasta scores: E(): 4.7e-117, FT 67.317% id in 410 aa" FT /protein_id="CAE41038.1" FT /translation="MKRNVLIIGAGGVAHVVAHKCAQHNATLGEIHIASRTLDKAQGIV FT RSVHAMGNLQTNGVVKAHGLNALDIKATAALIRATNARIVIQAGTSFLNMAVLAACIET FT GAAYIDTAIHEDPAKTCEAPPWYANYEWKQAQACADAGVTAILGAGFDPGVVNAYAKLA FT VDELFDEVSSIDIIDTNAGSHGKYFATNFDPEINFREFTGSVWSWQEGRWCENRMFEEQ FT RAWDLPVVGRQTTYLTGHDEIHSLSTHLNVPNIRFWMGFSDHYINVFTVLNSLGLLSEQ FT PVRTAEGQQVVPLKVVKAVLPDPASLARTYKGKTCIGDLVRGVKDGRPHEVLIYNVCDH FT EQAYREVGSQAISYTAGVPATAAALLIADGAWDNRKMNNIEQLAPRPWLQLLETMGLPS FT RIRDAHGDRALLSPCGKLLKAA" FT misc_feature 745202..745261 FT /note="Signal peptide predicted for BP0732 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.648) with cleavage site FT probability 0.520 between residues 20 and 21" FT misc_feature 746123..746146 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT repeat_region 746523..746554 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 746523..747575 FT CDS 746625..747575 FT /transl_table=11 FT /locus_tag="BP0733" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41039.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 746883..746948 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 747006..747539 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(747544..747575) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 747617..747772 FT /transl_table=11 FT /locus_tag="BP0734" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE41040.1" FT /translation="MAISTLGPTAPGGLHWCRQRNAVAVSYGYRFNRTFLILMPCPGGQ FT LAWPPP" FT misc_feature 747701..747733 FT /note="ScanRegExp hit to PS00284, Serpins signature." FT CDS 747819..748409 FT /transl_table=11 FT /locus_tag="BP0735" FT /product="putative exported protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1840 TR:Q9PCE1 (EMBL:AE004005) (237 aa) fasta scores: FT E(): 4e-29, 47.486% id in 179 aa, and to Zymomonas mobilis FT hypothetical 22.3 kDa protein zm10orf9 TR:Q9XBR4 FT (EMBL:AF157493) (204 aa) fasta scores: E(): 1.4e-18, FT 34.807% id in 181 aa" FT /protein_id="CAE41041.1" FT /translation="MKKNYPAYFAATLLALAGLSAQAAPVDYRIDPEHTEVVVTWDHLG FT FSKPTAHAGGVTGVVRYDAASPADSAVDLRIPVSKLTSHVPKLDGMLQGVQFFEAARYP FT DIRFKSTSVTDRGDGRLQIDGILRIKGIDKPVVLQARRNGQGMHPMAQRPAIGFDATTT FT LKRSDFGVDAFAPDVSDEVQLRITIEAVAEAAR" FT misc_feature 747819..747887 FT /note="Signal peptide predicted for BP0735 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 23 and 24" FT CDS complement(748425..750869) FT /transl_table=11 FT /gene="bfrF" FT /locus_tag="BP0736" FT /product="putative ferric siderophore receptor" FT /note="Similar to Escherichia coli ferrichrome-iron FT receptor precursor FhuA or TonA or B0150 SW:FHUA_ECOLI FT (P06971) (747 aa) fasta scores: E(): 7.8e-38, 40.000% id in FT 725 aa, and to Pseudomonas aeruginosa probable FT hydroxamate-type ferrisiderophore receptor Pa0470 TR:Q9I648 FT (EMBL:AE004484) (802 aa) fasta scores: E(): 1.4e-103, FT 40.000% id in 815 aa" FT /protein_id="CAE41042.1" FT /translation="MVITFNLFSVKHSMRARPSAATRALHSSSRPRRLIPALLGALACL FT GTGVQAAPIDVDIPPQNLAQALHQLGRQANLQVLYSQDLVDGQRSPAVQGRMEPAEALE FT RLLKGRNIRYSIQHNTVTLTPMPLTATLPAISVVGALPDSDTYVATGTTAGTKTDTPLI FT EIPQSISVVTAAQIREQNPQTLGDAVRYTPGIVVQEGFNRTDDPFIIRGFDVRTNPGVM FT FRDGLKIPLPHYSAMSEPYALERIEVVKGPASVLYGQASPGGIVNVVSKRPTDSPLREL FT QLSGGSHSNRQLAGDFGGRIDDEGRLTYRLTGLARNADTMIDHVPDDRYYLAPALTWRI FT SPDTSLTLLASYMKNKTINNAGYPLEGTVKYNPNGRIPRHRFTGEPDWSKWDQEVANVG FT YQFAHRFNDTWQFKQNLGYAQSRNRVNHAYWWTWVPGSDFSTAERGAYRRDDDAHGVSI FT DNQFEATWQSGRFRHNTLFGLDYTETSFTRKQYAGYNNLAPIDFFDPAYGSDVLLPAKP FT DTYTNEKRSQLGLYLQDQIKFDDKLVVVLSGRYDNADGSTLNKLSGVNTRTGDNAFTWR FT TGLLYLADNGLAPYTSYSTSFQPQAGTTSPARGTTPFDPTKGKQWEAGVKYQPNGSNSF FT ITASVFELTRTNVPTTDPANPVYSVQEGEVRSRGLELSATANLASGWNLIAAYTYTDAE FT ITKSNSNTLGNTPEAVPRNMASLWSDYTVPSGALAGLNIGAGVRYMGSTYNNTNAAKVG FT DYTVFDAALRYDFGARSPSLKGWTADLTVRNLFDKDYVASCTYACFYGEGRTVLGRVTY FT KW" FT misc_feature complement(748428..748757) FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT misc_feature complement(750717..750869) FT /note="Signal peptide predicted for BP0736 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 51 and 52" FT misc_feature complement(750738..750770) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(750989..751960) FT /transl_table=11 FT /locus_tag="BP0737" FT /product="putative inner membrane sensor for iron FT transport" FT /note="Similar to Bordetella bronchiseptica putative inner FT membrane sensor BupR TR:Q9L429 (EMBL:AJ251793) (344 aa) FT fasta scores: E(): 7.6e-19, 33.025% id in 324 aa, and to FT Pseudomonas aeruginosa probable transmembrane sensor Pa2388 FT TR:Q9I192 (EMBL:AE004665) (331 aa) fasta scores: E(): FT 3.9e-47, 44.377% id in 329 aa" FT /protein_id="CAE41043.1" FT /translation="MAVPPSKQDDLLTEQAVQWCVRIHDACCSEQDRAALQAWLEADPR FT HAREYEAVRDIWTLAQDLPAHEAPAKACAPRRRPYPAARRALGACALGLACWAAGWWFA FT VLPSSYHRYASDARVATVTLGDGTEVDMNIDTAMVYRNYRDARRVRLSDGEAYFRVFHD FT ASHPFVVEAGAGTITVTGTAFNVWKSGDNVVVTLVEGRVDLRASATGKTVSLQPLTQAR FT YAGRGEPVTRAVDGAQSAAWRHGKLVLDNTTLRDAIMQINRYLPAEARYTAVDPAIAGL FT RLGGTYDVRNVGELARALPDILPVRTVRKADGSLALVPNPPR" FT misc_feature complement(751646..751702) FT /note="1 probable transmembrane helix predicted for BP0737 FT by TMHMM2.0 at aa 86-105" FT CDS join(752092..752547,752547..752579) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0738" FT /product="ECF-family sigma factor Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 152. The sequence has been checked FT and believed to be correct. Similar to Bordetella FT bronchiseptica putative Ecf sigma factor BupI TR:Q9L430 FT (EMBL:AJ251793) (177 aa) fasta scores: E(): 6.1e-14, FT 37.419% id in 155 aa, and to Escherichia coli probable RNA FT polymerase sigma factor FecI or B4293 SW:FECI_ECOLI FT (P23484) (173 aa) fasta scores: E(): 1.2e-10, 34.507% id in FT 142 aa" FT /db_xref="PSEUDO:CAE41044.1" FT misc_feature 752119..752283 FT /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF FT subfamily)" FT misc_feature 752455..752520 FT /note="Predicted helix-turn-helix motif with score 996 FT (+2.58 SD) at aa 134-155, sequence MSHDEIANSLGISVDMVHKHLT" FT variation 752548 FT /note="T in pertussis; (A)T in parapertussis and FT bronchiseptica" FT CDS complement(752576..753526) FT /transl_table=11 FT /locus_tag="BP0739" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41045.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 752576..752607 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(752576..753628) FT misc_feature complement(752612..753145) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(753203..753268) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(753597..753628) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(753623..753661) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0739A" FT /product="transposase (pseudogene)" FT /note="transposase fragment for IS481-like element" FT repeat_region complement(753623..753751) FT /note="Fragment of a IS481-like element" FT repeat_region 753723..753751 FT /note="Inverted repeat for IS481-like element" FT CDS complement(753748..755943) FT /transl_table=11 FT /locus_tag="BP0740" FT /product="putative DNA methylase" FT /note="no significant database matches" FT /protein_id="CAE41047.1" FT /translation="MPPPSRKPAAPRRVRRPAAAPVPRLAPVAGPGRLIDEGLSFYEAS FT LAGKAERYGRGETPHTIHVWWARRPHSAMRALVYAALRAPADKRAAARLSELGATPVPQ FT PGLLAEAAAELAGQYGGAPRVLDMFGGGGTIAFEAALLGCDAHSIDVNELAVFLQQANL FT TYGATLDHGLLKQLAHRHGQAVLQRLARRTETLYPLRGRLASQAEKPIVYLWTYRHACP FT QCGYAYTLSRRPWLSKKAGKALAMVATPGPDGDGVDMVSLPDGEPPPSRWAGRGATACP FT RCSATATPGIADSADHCVAVVTSAGVGKQFALRDDALPAAGLLREQEETLLQRTGLALP FT ATTLPAWSGIVNPALYGMRGHADLFNPRQRLVTLMLLEELLAEHRTLQAAHGADVARFV FT SASLSGLIDQMVDWNCRLSMWIPQNEQVGRAFCGPGVAMLWDYAEVDPVGTGPGNLHAK FT LERICAGIDALALLRRPVQVQRASAAALPYPDDSFDAIVTDPPYYDNIFYSVLADFFYA FT WKKPLIDAIENRPTTPPHVPTANSGHDELVASRQRAGGSARAAHDEYCARLGQALREAA FT RVLKPDGLLAFVYSHASVLGWAALVTAFRAAPFTINSVQPLSIERKARPRALASEAVNT FT CTTFVARRAQAPRPVLARAALQAQFDAILRGGLHRSLLRAGWHEHDAGVALIAQGVALL FT ANCAAVEDADTAALIVDLAGQVSALLPGFSIKQRASL" FT misc_feature complement(754438..754458) FT /note="ScanRegExp hit to PS00092, N-6 Adenine-specific DNA FT methylases signature." FT CDS complement(756016..756444) FT /transl_table=11 FT /locus_tag="BP0741" FT /product="putative transcriptional regulator" FT /note="Similar to Bacteriophage 434 repressor protein CI FT SW:RPC1_BP434 (P16117) (94 aa) fasta scores: E(): 1.2, FT 35.088% id in 57 aa, and to Bacillus subtilis hypothetical FT 15.6 kDa protein TR:O52855 (EMBL:U09819) (139 aa) fasta FT scores: E(): 0.38, 33.333% id in 69 aa. It's possible that FT the upstream IS481 element has inserted within the FT N-terminus of this CDS. Also similar to BP0744, 65.972% FT identity (70.370% ungapped) in 144 aa overlap." FT /protein_id="CAE41048.1" FT /translation="MKKFSDRLKHARRLRQLSQENLAHISGLSQSAVASYENGLRQSSR FT SIRKLAIALQVNLDWFETGVGPMELEAYPSGPAAWRPGLMEPGGERAAAPWPFRAVAHA FT RYQALSARDKLLLEQLVRTFIDACHADYGRAPPWPRER" FT misc_feature complement(756262..756423) FT /note="HMMPfam hit to PF01381, Helix-turn-helix" FT misc_feature complement(756331..756396) FT /note="Predicted helix-turn-helix motif with score 1793 FT (+5.29 SD) at aa 45-66, sequence LSQENLAHISGLSQSAVASYEN" FT repeat_region 756444..756475 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 756444..756846 FT CDS join(756546..756845,756848..756940,756940..757116, FT 757116..757493) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0742" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have three FT frameshift mutations. Transposase for IS481 element" FT /db_xref="PSEUDO:CAE41049.1" FT repeat_region 756847..756941 FT repeat_region 756934..757115 FT repeat_region 757111..757493 FT misc_feature 757143..757457 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(757462..757493) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(757609..758052) FT /transl_table=11 FT /locus_tag="BP0744" FT /product="putative transcriptional regulator" FT /note="Similar to Bacteriophage 434 repressor protein CI FT SW:RPC1_BP434 (P16117) (94 aa) fasta scores: E(): 0.021, FT 37.097% id in 62 aa, and to Bacillus subtilis hypothetical FT transcriptional regulator YqaE yqaE SW:YQAE_BACSU (P45902) FT (116 aa) fasta scores: E(): 0.058, 27.083% id in 96 aa. FT Also similar to BP0741, 65.972% identity (70.370% ungapped) FT in 144 aa overlap." FT /protein_id="CAE41050.1" FT /translation="MKTFSDRLKHARALRSLTQQDLARASGLSQSAVASYENGQRQSSR FT SVRKLAAALQVNLDWLETGKGSMESLADYSASPAGGAYYLMEPGSGEAPPRALPPWPFT FT TIARAQYEALAARDKRLLEQMLRSFVEACHAEYADGRGRARKH" FT misc_feature complement(757870..758031) FT /note="HMMPfam hit to PF01381, Helix-turn-helix" FT misc_feature complement(757939..758004) FT /note="Predicted helix-turn-helix motif with score 2149 FT (+6.51 SD) at aa 17-38, sequence LTQQDLARASGLSQSAVASYEN" FT CDS 758160..758909 FT /transl_table=11 FT /locus_tag="BP0745" FT /product="putative transcriptional regulator" FT /note="Similar to Neisseria cinerea BasR TR:Q9F9Y4 FT (EMBL:AF139614) (222 aa) fasta scores: E(): 0.17, 28.729% FT id in 181 aa, and to Bordetella pertussis transcriptional FT regulatory protein, putative BasR TR:Q9S3M3 (EMBL:AJ132741) FT (223 aa) fasta scores: E(): 0.0027, 28.319% id in 226 aa" FT /protein_id="CAE41051.1" FT /translation="MLAFSSVMIEARVQLEAGWRQAGWIVDWCEGQHALARLLAMHPPD FT AVALCGVAGTLSGLVRTTRTSVPAAVVVALLSEGGLPERIAMMRAGVDLCWPIETQVEE FT VAAMVDAFARRGTASAAAASAWYLSNAGRVLAGPGGVRLPLTVAEREFMARLLAAPGHR FT LARQQLACGFRQRGVQDGAPVSSEVLPSWTANSSHAASYDAAAGLSRNVDVMVSRLRAK FT AQRMGINLPLLSVRRWGYLFIADSDAG" FT CDS complement(759075..760151) FT /transl_table=11 FT /gene="proB" FT /locus_tag="BP0746" FT /product="glutamate 5-kinase" FT /EC_number="2.7.2.11" FT /note="Similar to Escherichia coli glutamate 5-kinase ProB FT or B0242 or Z0303 or Ecs0269 SW:PROB_ECOLI (P07005) (367 FT aa) fasta scores: E(): 1.2e-47, 42.697% id in 356 aa, and FT to Pseudomonas aeruginosa glutamate 5-kinase ProB or Pa4565 FT SW:PROB_PSEAE (Q9HVL9) (372 aa) fasta scores: E(): 6.1e-79, FT 61.064% id in 357 aa" FT /protein_id="CAE41052.1" FT /translation="MGSSLVTNEGRGLDRAAVGHWAAQIAALHQQGKQVVLVSSGAIAE FT GMARLGWRKRPSAMHELQAAAAVGQMGLCQAYEAAFAEFGLRTAQILLTHEDLADRHRY FT LNARSTLFALLRLGVVPIVNENDTVVTDEIRFGDNDTLGALVTNLIEADALIILTDQRG FT LYEADPRRDPAARFVAHAQAGDAALEAMAGGAGSGVGTGGMLTKILAAKRAAHSGAHTV FT IASGRERNVLTRLAQGECIGTELRAVLPVWSARKQWLADHLRLRGRVVLDDGAVHALLH FT EGKSLLPIGVAEVQGEFERGDVVACVDMHGRECARGLINYSSADTRRILRQPSSQIARI FT LGSMTDPELMHRDNLVVT" FT misc_feature complement(759129..759353) FT /note="HMMPfam hit to PF01472, PUA domain" FT misc_feature complement(759297..759320) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(759510..759563) FT /note="ScanRegExp hit to PS00902, Glutamate 5-kinase FT signature." FT misc_feature complement(759591..760169) FT /note="HMMPfam hit to PF00696, Amino acid kinase family" FT CDS complement(760282..761415) FT /transl_table=11 FT /locus_tag="BP0747" FT /product="probable GTP-binding protein" FT /note="Similar to Burkholderia pseudomallei GTP-binding FT protein TR:Q9FD27 (EMBL:AF292383) (372 aa) fasta scores: FT E(): 2.6e-86, 63.947% id in 380 aa, and to Neisseria FT meningitidis GTP-binding protein Nmb2086 TR:Q9JXE5 FT (EMBL:AE002558) (384 aa) fasta scores: E(): 3.1e-77, FT 58.639% id in 382 aa" FT /protein_id="CAE41053.1" FT /translation="MKFVDEATIEVIAGKGGNGVASFRREKFIPKGGPDGGDGGRGGSI FT YAVADRNINTLIDFRYARLHRAKNGENGRGSDQYGAAAPDITLRVPVGTVVHDADTGEV FT LFDLDRHDQKVTLAAGGAGGMGNIHFKSSTNRAPRQWTPGKEGEQRRLRMELKVLADVG FT LLGLPNAGKSTLISRISNARPKIADYPFTTLHPNLGVVRTSPSRSFVVADIPGLIEGAS FT EGAGLGHLFLRHLARTRVLLHLVDISSPDPEADPIEQAVVDANAIVEELRRYDPELAAK FT PRWLVLNKLDMVPDAQDAQQRFCAEFGWTGPVFAISGLNGEGTQDLIWALQDYLDAEKR FT KDQDAQDQADGTYVFEDPRFDASRGGAAPATPPGGDE" FT misc_feature complement(760423..761370) FT /note="HMMPfam hit to PF01018, GTP1/OBG family" FT misc_feature complement(760738..760779) FT /note="ScanRegExp hit to PS00905, GTP1/OBG family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(760897..760920) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(761565..761825) FT /transl_table=11 FT /gene="rpmA" FT /locus_tag="BP0748" FT /product="50S ribosomal protein L27" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L27 RpmA or B3185 SW:RL27_ECOLI (P02427) (84 aa) fasta FT scores: E(): 2.8e-21, 71.084% id in 83 aa, and to Vibrio FT cholerae ribosomal protein L27 Vc0436 TR:Q9KUS9 FT (EMBL:AE004131) (86 aa) fasta scores: E(): 5.1e-23, 73.256% FT id in 86 aa" FT /protein_id="CAE41054.1" FT /translation="MAQKKGGGSTRNGRDSESKRLGVKVYGGQSILAGSIIVRQRGTRF FT HPGVNVGVGKDHTLFALANGKVHFSVKGALNKPTVSVVAAE" FT misc_feature complement(761577..761822) FT /note="HMMPfam hit to PF01016, Ribosomal L27 protein" FT misc_feature complement(761682..761726) FT /note="ScanRegExp hit to PS00831, Ribosomal protein L27 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(761859..762170) FT /transl_table=11 FT /gene="rplU" FT /locus_tag="BP0749" FT /product="50S ribosomal protein L21" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L21 RplU or B3186 or Z4549 or Ecs4065 SW:RL21_ECOLI FT (P02422) (103 aa) fasta scores: E(): 4.8e-18, 47.573% id in FT 103 aa, and to Burkholderia pseudomallei 50S ribosomal FT protein L21 RplU TR:Q9FD29 (EMBL:AF292383) (103 aa) fasta FT scores: E(): 1.4e-29, 80.583% id in 103 aa" FT /protein_id="CAE41055.1" FT /translation="MYAVIKTGGKQYRVATGEKLKVEQIPADIGQEITLDQVLSVGEGD FT QLKVGTPLVSGAVVKATVLAHGRHDKIKIFKMRRRKHYQKHQGHRQNYTEIRIEAITA" FT misc_feature complement(761883..762170) FT /note="HMMPfam hit to PF00829, Ribosomal prokaryotic L21 FT protein" FT misc_feature complement(761889..761957) FT /note="ScanRegExp hit to PS01169, Ribosomal protein L21 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 762595..763743 FT /transl_table=11 FT /locus_tag="BP0750" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical 41.1 FT kDa protein Scf41.20C TR:Q9RJU9 (EMBL:AL117387) (390 aa) FT fasta scores: E(): 2.9e-72, 54.856% id in 381 aa, and to FT Agrobacterium tumefaciens Agr_c_4970p TR:AAK88456 FT (EMBL:AE008188) (386 aa) fasta scores: E(): 7e-73, 53.457% FT id in 376 aa" FT /protein_id="CAE41056.1" FT /translation="MAVPHDDLPEDLERALLVGRVWQPAPVDGPCVVAVRGGRLYDLTA FT VTPTLADLLDRGDRVALARNAAGECLGPAADWLAGRAAGAMLAPCDLQPVKAAGATFAA FT SLVERIGAEQAGGDAGRAAAVRERIAGLIGTDLSQLRPGSPEAARLKAVLWARGMWSPY FT LEVGLGPDAEVFSKAPPMASVGYGSWIGLLPESEWNNPEPEIVLAVDARGQAVGATLGN FT DVNLHDVEARSALLQNRAKDNNGSCAMGPFVRLFDASYGLGDVRRADVRLRIEGQEDGF FT VLDATSHMREISRDPLELVRQTCGGHHQYPDGFMLFLGTMFSPTQDRAAAGRGFTHRPG FT DLVRIASPRLGALVNRVGLATAIAPWTFGVRALYANLRRRGL" FT CDS 763858..764823 FT /transl_table=11 FT /gene="ispB" FT /gene_synonym="cel" FT /locus_tag="BP0751" FT /product="octaprenyl-diphosphate synthase" FT /EC_number="2.5.1.-" FT /note="Similar to Escherichia coli octaprenyl-diphosphate FT synthase IspB or Cel or B3187 SW:ISPB_ECOLI (P19641) (323 FT aa) fasta scores: E(): 1.2e-63, 53.560% id in 323 aa, and FT to Vibrio cholerae octaprenyl-diphosphate synthase Vc0434 FT TR:Q9KUT1 (EMBL:AE004131) (348 aa) fasta scores: E(): FT 3.1e-63, 53.870% id in 323 aa" FT /protein_id="CAE41057.1" FT /translation="MNLPELIAPIADDMKAVDTVIRDRLNSDVVLIRTIGDYIIGAGGK FT RMRPAMVLMVARALGYQGTHHQLLAAVVEFIHTATLLHDDVVDESDLRRGRDTANAVFG FT NAASVLVGDYLYSRSFEMMVEADSMRIMQILSQATTVIAEGEVLQLLNVHDPDVSQERY FT LQVVRYKTAKLFEAAAQVGAVLAGASPEQETAAAAYGRHVGTAFQLVDDVLDYSGDAHA FT LGKNVGDDLREGKPTLPLIRVMETGTPEQRELIREAIKTGQADFAAVAQAIQATDALAH FT ARQAAENEAELARQALSAFPVSLYQKSLLEFCAFAVNRDR" FT misc_feature 763948..764700 FT /note="HMMPfam hit to PF00348, Polyprenyl synthetase" FT misc_feature 764098..764142 FT /note="ScanRegExp hit to PS00723, Polyprenyl synthetases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 764464..764502 FT /note="ScanRegExp hit to PS00444, Polyprenyl synthetases FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT tRNA 764870..764946 FT /note="tRNA Pro anticodon CGG, Cove score 84.17" FT CDS complement(765092..765958) FT /transl_table=11 FT /locus_tag="BP0752" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT activator protein LysR or B2839 SW:LYSR_ECOLI (P03030) (311 FT aa) fasta scores: E(): 4.6e-23, 34.507% id in 284 aa, and FT to Agrobacterium tumefaciens regulatory protein NocR FT SW:NOCR_AGRT5 (Q00678) (300 aa) fasta scores: E(): 5.3e-22, FT 33.333% id in 285 aa" FT /protein_id="CAE41058.1" FT /translation="MLNFRQVETFRAVMLTRSMTQAAKDLHTTQPNVSRVIAQLEARIG FT LRLFERVAGKLVPTREGEVFFRDVEMTFAGLRSLESSAATLRRRGTGHLRISAVPSPAL FT VTVPEAMQLFAERFPDVTVSMHVADSITVCQWTAAGYSDIGVASDIFSSPGIGHHVASE FT ALGVCIVPAGHRLAGMPRALAPADLAGERFLSLSPNDAMRKEIDKVFAAAICHMVGLGL FT GVSIANPDVADGFRSLDIAIKPFAPDIRFSTYLVYPSSSPLSLLAQTFCECYEISAGRK FT RARRQAG" FT misc_feature complement(765521..765913) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(765815..765907) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(765845..765910) FT /note="Predicted helix-turn-helix motif with score 1682 FT (+4.92 SD) at aa 4-25, sequence RSMTQAAKDLHTTQPNVSRVIA" FT CDS 766089..768137 FT /transl_table=11 FT /gene="hyuA" FT /locus_tag="BP0753" FT /product="putative hydantoin utilization protein A" FT /note="Similar to Pseudomonas sp hydantoin utilization FT protein A HyuA SW:HYUA_PSESN (Q01262) (690 aa) fasta FT scores: E(): 2.8e-78, 35.044% id in 682 aa, and to FT Rhizobium loti hydantoin utilization protein A Mlr7024 FT TR:Q987J7 (EMBL:AP003010) (692 aa) fasta scores: E(): FT 2.1e-118, 47.415% id in 677 aa" FT /protein_id="CAE41059.1" FT /translation="MSLRIGVDIGGSFADFAVLDESTRTIQTLKVFSRPDAPGSEVLAG FT IEQLKARHGLDPAQVSYFTHGTTVGVNAVVQRRGLKLALITTRNFEDVLDIGRLKIPDM FT YHLMSKRPAPLISRDRVFGVDERLGADGSVVAPVDEASVLAAAEALREAGCEGVVVSLL FT HAYRNPAHERQVKAILQRALPGMFVSCSHEVWPIIREYERTLTATIGGYVQPRVSHYLE FT SLQGALRESGVPVDLKVTKSNGGVMSAEHGKANCVQMILSGTASGVIGAAYIADLCHIP FT NCMSLDIGGTTADIALIVDGKPQFATGEYIGDFQIHIPSVSVSSVGDGGGSIAWVDELG FT VLKVGHQSAGSTPGPVCYGKGGTQPTITDAFAVMGVIGSQQLGYNAVQVDVEAARRSIE FT PLAEKLGTDVLRTAEAIVNVSVSSMYAGVSRVISRFGIDPRVFSLMPFGGAGPMLACYL FT AKALKVQKLLVPTTPGVLSALGGLIADVKNDFVRTTYCDLNAATVGSLAQAASELEAQA FT RAWLVAEVGTDADAEIDISADMRYRGQSFEIDTPVERAWLEAGAIDSLSQAFHKEHERL FT YGHGDASAGVQVVAMRLVITSRTPKPELNHIAQGAGVPPRESTLRIWLEGQYRDVPLYR FT CEKLLAGQAFSGPAIVAQDDCTTCVLPGFDARVDTYGNLELTALALN" FT misc_feature 766098..767741 FT /note="HMMPfam hit to PF01968, Hydantoinase/oxoprolinase" FT CDS 768155..770152 FT /transl_table=11 FT /gene="hyuB" FT /locus_tag="BP0754" FT /product="hydantoin utilization protein B" FT /note="Similar to Pseudomonas sp hydantoin utilization FT protein B HyuB SW:HYUB_PSESN (Q01263) (592 aa) fasta FT scores: E(): 1.7e-52, 31.134% id in 591 aa, and to FT Rhizobium loti hydantoin utilization protein B Mlr7025 FT TR:Q987J6 (EMBL:AP003010) (661 aa) fasta scores: E(): FT 4.6e-142, 55.807% id in 663 aa. Also similar to BP0821 FT (58.133% identity in 664 aa overlap)" FT /protein_id="CAE41060.1" FT /translation="MNFDKTVLQIFANYCVAAAESMAHTLMRTAHSAFVKETEDFSCTI FT MTPRGQTFASPKTLGATWYPGLDFSGAIDMIDGYEPGDICMTNDAYSGYVATHTPDIMM FT WKPVYYQGEMVCFVGGHIHNTDMGGAVPASLSRTLTEVHQEGIRFPPTKIVRRGVLNEE FT LMRLMELNVRSPDQNRGDLQAQTAMLMTGERRIVEIIERFGLQAFKEGMAAMLDYSEQQ FT ARAIVRAMPDGEYFFAEYANEDSLNGKPLRVAITLRIRGDELEFDFTGSDPQLTSSLNM FT PTGGKERHVLALVGLNYVLYSLNPEILLNAGMLRVARCILPEGSVVNPLAPAAVGMRSL FT TCKVVQYATMGVFSQVVPDRLPASPAGGMSIVNVKTTDRDGKTIIAAIEPVGGGAGGDP FT YSDGADASGAIVAFLRNTPVEINETEVPIRITRYGMVPDSGGPGRYRGGLGTCMEFQVY FT TPNSAVTARNRDRSRFASWGVLGGKAGTVSRFLRNPGTAHEEDLGVHDFIHCQPGDVIR FT LEGCGGGGYGSPWERDPARVLHDVRCGYVSVENARGQYGVVIEGGEVSRDATARLRAEL FT AGRDPAVAHYDHGAGRDAFEAVWTLARYERMTHHLAGVAPIWRHFLKIKIFDALEQRLG FT GNVADTRPEIVDEIFAQLLKACPQLQAASA" FT misc_feature 768161..769774 FT /note="HMMPfam hit to PF02538, Hydantoinase B/oxoprolinase" FT misc_feature 768653..768676 FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT CDS 770187..771524 FT /transl_table=11 FT /locus_tag="BP0755" FT /product="putative amino acid deaminase" FT /note="Similar to Proteus vulgaris L-amino acid deaminase FT Lad TR:Q9LCB2 (EMBL:AB030003) (471 aa) fasta scores: E(): FT 9.2e-29, 31.628% id in 430 aa, and to Proteus mirabilis FT amino acid deaminase Aad TR:Q51890 (EMBL:U35383) (473 aa) FT fasta scores: E(): 7e-29, 28.638% id in 426 aa" FT /protein_id="CAE41061.1" FT /translation="MQQLKQALLRIDTPHTPPAEVDVAIIGAGAAGVATAHELTRLGVR FT VAVIEKGWVAAEQSSRNWGWCRTLGRDIRELELARLSVDLWRSVQADTGVDAGFRETGV FT VFVTDDPSELRTWERWQQAAAARGVPARMLSAREANATHAWGKTPWIGGIRTERDGYAE FT PARAIPLLARHAMDNGAQVIQQCAVNELLVEGGRVAGVQTECGLVRASQVVVAGGVWSS FT LFCRKHKLPLPILQVHSSASRSRQFDTGGAAPARATHFSFRHREDGGLTLAKSGRGTMH FT VVPDLLRYGMKFRSLYRARKANVRLSIGRQFFAQCWDEFRYFHLDRPPYARHRVLDPGP FT DMALVRSAYEDAGAVFPGMGSDLIDQAWGGVIDNTPDGIPVISDVARMPGLYLCTGFSG FT HGFSSSLGAGRCLAQWIARGRSDLSLDAFSYARLVDGRRLQPSILY" FT misc_feature 770607..770630 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS join(771521..771685,772735..773640) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0756" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Comamonas testosteroni OrfJ FT protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: FT E(): 2.7e-31, 33.735% id in 332 aa, and to Rhizobium FT meliloti conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 1.1e-31, FT 35.629% id in 334 aa" FT /db_xref="PSEUDO:CAE41062.1" FT repeat_region 771685..772736 FT CDS 771787..772734 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0756A" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. Transposase for IS481 element. The FT transposase lacks a stop codon, hence it is fused to the FT C-terminal portion of the disrupted CDS." FT misc_feature 772045..772110 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 772168..772701 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(772706..772736) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 773695..775176 FT /transl_table=11 FT /gene="gabD" FT /locus_tag="BP0757" FT /product="succinate-semialdehyde dehydrogenase [NADP+]" FT /EC_number="1.2.1.16" FT /note="Similar to Escherichia coli succinate-semialdehyde FT dehydrogenase [NADP+] GabD or B2661 SW:GABD_ECOLI (P25526) FT (482 aa) fasta scores: E(): 4.7e-99, 52.664% id in 488 aa, FT and to Agrobacterium radiobacter AttK TR:Q9WWD5 FT (EMBL:U59485) (484 aa) fasta scores: E(): 4.7e-106, 57.819% FT id in 486 aa" FT /protein_id="CAE41064.1" FT /translation="MSLSVGNAALLPGRNLIGSEWREAALGARFAVADPATGKVIAHVP FT DSGARDAGAAVTAAHQAFADWRRTPAKVRAQIIKRWNALLHENAEDLARLISSEQGKPL FT AEARGEVSYAASYVEWFAEEATRADGDLIPSPAQGRRMFALREPVGVVAAITPWNFPAA FT MIARKIAPALAAGCTVVCKPAEDTPLTSLALTALAQQAGVPPGVLNIVTASRGRAAEVA FT DAWLDDPRVRKITFTGSTPVGKHLARRSADTLKRVSLELGGNAPFIVFDDADLDAAVEG FT LMVSKFRNGGQTCVCPNRIFVQAGVHDAFVRKLAARVEGLVVGPASDPASQIGPMINAR FT AVEKIEHHVADALERGARLAVGGKRIHSARCAGDHYYAPTVLTGVDETMACFREETFGP FT VAPITVFASEAEVVAAANATAFGLAAYFYSTDVRRIWRLADALETGIVGVNEGALAAEA FT APFGGVKDSGYGREGSRHGLAEYMQIKYVCQGQLD" FT misc_feature 773752..775167 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature 774268..774333 FT /note="Predicted helix-turn-helix motif with score 975 FT (+2.51 SD) at aa 192-213, sequence LALTALAQQAGVPPGVLNIVTA" FT misc_feature 774469..774492 FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT misc_feature 774553..774588 FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT CDS complement(775192..775749) FT /transl_table=11 FT /gene="cyaC" FT /gene_synonym="HlyC" FT /locus_tag="BP0758" FT /product="cyclolysin-activating lysine-acyltransferase" FT /EC_number="2.3.1.-" FT /note="Identical to the previously sequenced Bordetella FT pertussis cyclolysin-activating lysine-acyltransferase CyaC FT SW:CYAC_BORPE (Q45359) (185 aa) fasta scores: E(): 2.1e-78, FT 99.459% id in 185 aa, and to Escherichia coli FT hemolysin-activating lysine-acyltransferase HlyC FT SW:HLYC_ECOLI (P06736) (170 aa) fasta scores: E(): 1.5e-24, FT 40.698% id in 172 aa" FT /protein_id="CAE41065.1" FT /translation="MLPSAQAPSLLNPTDDFAALGNIAWLWMNSPMHRDWPVHLLARNT FT LAPIQLGQYILLRCNDVPVAYCSWALMDADTELSYVMAPSSLGGNAWNCGDRLWIIDWI FT APFSRDDNRALRRALAERHPDSVGRSLRVRRGGDTARVKEYRGRALDAAAARAQLDRYH FT AELIAGLRASNGGYAPRGRGTA" FT CDS 776228..781348 FT /transl_table=11 FT /gene="cyaA" FT /gene_synonym="cya" FT /locus_tag="BP0760" FT /product="bifunctional hemolysin-adenylate cyclase FT precursor" FT /EC_number="4.6.1.1" FT /note="Identical to the previously sequenced Bordetella FT pertussis bifunctional hemolysin-adenylate cyclase FT precursor Cya or CyaA SW:CYAA_BORPE (P15318) (1706 aa) FT fasta scores: E(): 0, 99.941% id in 1706 aa, and to FT Bordetella parapertussis bifunctional hemolysin-adenylate FT cyclase precursor CyaA TR:Q9L469 (EMBL:AJ249835) (1706 aa) FT fasta scores: E(): 0, 97.714% id in 1706 aa" FT /protein_id="CAE41066.1" FT /translation="MQQSHQAGYANAADRESGIPAAVLDGIKAVAKEKNATLMFRLVNP FT HSTSLIAEGVATKGLGVHAKSSDWGLQAGYIPVNPNLSKLFGRAPEVIARADNDVNSSL FT AHGHTAVDLTLSKERLDYLRQAGLVTGMADGVVASNHAGYEQFEFRVKETSDGRYAVQY FT RRKGGDDFEAVKVIGNAAGIPLTADIDMFAIMPHLSNFRDSARSSVTSGDSVTDYLART FT RRAASEATGGLDRERIDLLWKIARAGARSAVGTEARRQFRYDGDMNIGVITDFELEVRN FT ALNRRAHAVGAQDVVQHGTEQNNPFPEADEKIFVVSATGESQMLTRGQLKEYIGQQRGE FT GYVFYENRAYGVAGKSLFDDGLGAAPGVPSGRSKFSPDVLETVPASPGLRRPSLGAVER FT QDSGYDSLDGVGSRSFSLGEVSDMAAVEAAELEMTRQVLHAGARQDDAEPGVSGASAHW FT GQRALQGAQAVAAAQRLVHAIALMTQFGRAGSTNTPQEAASLSAAVFGLGEASSAVAET FT VSGFFRGSSRWAGGFGVAGGAMALGGGIAAAVGAGMSLTDDAPAGQKAAAGAEIALQLT FT GGTVELASSIALALAAARGVTSGLQVAGASAGAAAGALAAALSPMEIYGLVQQSHYADQ FT LDKLAQESSAYGYEGDALLAQLYRDKTAAEGAVAGVSAVLSTVGAAVSIAAAASVVGAP FT VAVVTSLLTGALNGILRGVQQPIIEKLANDYARKIDELGGPQAYFEKNLQARHEQLANS FT DGLRKMLADLQAGWNASSVIGVQTTEISKSALELAAITGNADNLKSVDVFVDRFVQGER FT VAGQPVVLDVAAGGIDIASRKGERPALTFITPLAAPGEEQRRRTKTGKSEFTTFVEIVG FT KQDRWRIRDGAADTTIDLAKVVSQLVDANGVLKHSIKLDVIGGDGDDVVLANASRIHYD FT GGAGTNTVSYAALGRQDSITVSADGERFNVRKQLNNANVYREGVATQTTAYGKRTENVQ FT YRHVELARVGQLVEVDTLEHVQHIIGGAGNDSITGNAHDNFLAGGSGDDRLDGGAGNDT FT LVGGEGQNTVIGGAGDDVFLQDLGVWSNQLDGGAGVDTVKYNVHQPSEERLERMGDTGI FT HADLQKGTVEKWPALNLFSVDHVKNIENLHGSRLNDRIAGDDQDNELWGHDGNDTIRGR FT GGDDILRGGLGLDTLYGEDGNDIFLQDDETVSDDIDGGAGLDTVDYSAMIHPGRIVAPH FT EYGFGIEADLSREWVRKASALGVDYYDNVRNVENVIGTSMKDVLIGDAQANTLMGQGGD FT DTVRGGDGDDLLFGGDGNDMLYGDAGNDTLYGGLGDDTLEGGAGNDWFGQTQAREHDVL FT RGGDGVDTVDYSQTGAHAGIAAGRIGLGILADLGAGRVDKLGEAGSSAYDTVSGIENVV FT GTELADRITGDAQANVLRGAGGADVLAGGEGDDVLLGGDGDDQLSGDAGRDRLYGEAGD FT DWFFQDAANAGNLLDGGDGRDTVDFSGPGRGLDAGAKGVFLSLGKGFASLMDEPETSNV FT LRNIENAVGSARDDVLIGDAGANVLNGLAGNDVLSGGAGDDVLLGDEGSDLLSGDAGND FT DLFGGQGDDTYLFGVGYGHDTIYESGGGHDTIRINAGADQLWFARQGNDLEIRILGTDD FT ALTVHDWYRDADHRVEIIHAANQAVDQAGIEKLVEAMAQYPDPGAAAAAPPAARVPDTL FT MQSLAVNWR" FT misc_feature 777272..777295 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 777317..779089 FT /note="HMMPfam hit to PF02382, RTX N-terminal domain" FT misc_feature 779270..779434 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding protein" FT misc_feature 779618..779803 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding protein" FT misc_feature 779708..779764 FT /note="ScanRegExp hit to PS00330, Hemolysin-type FT calcium-binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 779990..780223 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding protein" FT misc_feature 780134..780190 FT /note="ScanRegExp hit to PS00330, Hemolysin-type FT calcium-binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 780413..780625 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding protein" FT misc_feature 780503..780559 FT /note="ScanRegExp hit to PS00330, Hemolysin-type FT calcium-binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 780791..781003 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding protein" FT misc_feature 780935..780991 FT /note="ScanRegExp hit to PS00330, Hemolysin-type FT calcium-binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 781426..783564 FT /transl_table=11 FT /gene="cyaB" FT /locus_tag="BP0761" FT /product="cyclolysin secretion ATP-binding protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis cyclolysin secretion ATP-binding protein CyaB FT SW:CYAB_BORPE (P18770) (712 aa) fasta scores: E(): 0, FT 97.199% id in 714 aa, and to Escherichia coli hemolysin FT secretion ATP-binding protein, chromosomal HlyB FT SW:HLY2_ECOLI (P10089) (707 aa) fasta scores: E(): FT 1.6e-133, 52.841% id in 704 aa" FT /protein_id="CAE41067.1" FT /translation="MTSPVAQCASVPDSGLLCLVMLARYHGLAADPEQLRHEFAEQAFC FT SETIQLAARRVGLKVRRHRPAPARLPRAPLPAIALDRQGGYFVLARFEPGADQAVLIQR FT PGQAPARLGQAEFEALWAGELLLCACAASPTQALARFDFSWFIPALVKHRHLIGEVLLI FT SLVLQFIALLTPLFFQVVMDKVLVNNAMETLNVIAVGFLAAILFEALLTGIRTYLFAHT FT SSKLDVELGARLYAHLLRLPLAYFQARRVGDSVARVRELEHIRAFLTGNAVTVLLDVVF FT SVVFIAVMFFYSVKLTLVVLAALPCYFLLSLVLTPVLRRRLDVKFNRGAENQAFLVETV FT SGIDTVKSLAVEPQWQRNWDRQLAGYVAAGLSVANVAMLANTGVTLISRLVALGVLWVG FT ATEVVAQRMTVGELVAFNMLSGHVTQPVIRLAQLWNDFQQTGVSMQRLGDILNCRTEVA FT GDKAQLPALRGSIELDRVSFRYRPDAADALRNVSLRIAPGEVVGVVGRSGSGKSTLTRL FT IQRMFVADRGRVLIDGHDIGIVDSASLRRQLGVVLQESTLFNRSVRDNIALTRPGASMH FT EVVAAARLAGAHEFICQLPEGYDTMLGENGVGLSGGQRQRIGIARALIHRPRVLILDEA FT TSALDYESEHIIQRNMRDICDGRTVIIIAHRLSAVRCADRIVVMEGGEVAECGSHETLL FT AAGGLYARLQALQAGEAG" FT misc_feature 781885..782706 FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region." FT misc_feature join(781903..781971,782014..782082,782230..782298, FT 782311..782379,782518..782586) FT /note="5 probable transmembrane helices predicted for FT BP0761 by TMHMM2.0 at aa 160-182, 197-219, 269-291, 296-318 FT and 365-387" FT misc_feature 782917..783471 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 782938..782961 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 783250..783294 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 783561..784883 FT /transl_table=11 FT /gene="cyaD" FT /locus_tag="BP0762" FT /product="cyclolysin secretion protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis CyaD protein cyaD SW:CYAD_BORPE (P11091) (440 aa) FT fasta scores: E(): 6.9e-151, 99.318% id in 440 aa" FT /protein_id="CAE41068.1" FT /translation="MRRALRELAARHGRVLAASWRQRHRRPAGWFDPVETEFLPSALSL FT QERPISPTARWLARILMALAAGALVWSVVGKTEIVVHAAGKVVPVGQSKIIAASETGRV FT ARVLVADNSRVAAGDVLLRLDAGVTEAEERKWRVQAAQARQDEARSRAMIRALDTGRAP FT VLAELPADPGMMAAQSYLDSQYADYQAQLRSIEAAIATYRRELGLVTQIAHAHRGLRRD FT GDVSQQAYLEKEQARMTLEGRLRQSEAQRAALQTQTRRQAFETLVLARKLAAQAEQEIA FT RTSAQRSRLVLTAPVDGVVQQLVALTEGTAVAATQPLMMVVPSGAGIQVQAQLDSKDIG FT FVRAGAPATVKVGAYDYTKYGTLEGKVLYVSPDTVVDDRQQHSYRVTIALAHPALEVDG FT KPRLLKEGMAVQADIRTGSRRLIEYLLSPVARHAGESLGER" FT misc_feature 783834..784790 FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein" FT misc_feature 784770..784838 FT /note="ScanRegExp hit to PS00543, HlyD family secretion FT proteins signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 784885..786309 FT /transl_table=11 FT /gene="cyaE" FT /locus_tag="BP0763" FT /product="cyclolysin secretion protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis protein CyaE precursor CyaE SW:CYAE_BORPE FT (P11092) (474 aa) fasta scores: E(): 2.3e-165, 100.000% id FT in 474 aa" FT /protein_id="CAE41069.1" FT /translation="MAAVQVRRRGRALALALWAGFALSVGGGVRARDGLATPPAFEGQA FT APAVSWPCPPPADRLDDLALLEAIDLALCHSPALRQGWARIKARSAEVGLARAPYYPSV FT ALSAGRSAQRRSTGLGEDGVRNNVMAVTLAWRLFDSGARSAALRAAQAQLDEAAQAYGA FT VLQDKLAEVVGAYYEAATARQALHTAVEDTEIARRSASIAARRARAGLDSHGDVLHAQA FT ALERARLAQAQAEGAQARALAGLAQVLGVDPATPIVLAPGPLAPQRIEDRELAQWLRDA FT RQRHPAIKAAQAGLAAATAQVDVARATDMPTVDLSLGHYRNSSENVSVFAGSSRSVSAS FT LNLRIPLFDGFARRHRIQGARAEVQRQEALLDQARLATGAAVARAYADLRAARASHEAS FT LRWLKAARAAYESDLRRYEAGVGGVAELLRAQSDWLSARQRHVLYAAQLRTRALALLAA FT AGELGRSTIDGDPPKE" FT misc_feature 784885..784977 FT /note="Signal peptide predicted for BP0763 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.965) with cleavage site FT probability 0.450 between residues 31 and 32" FT misc_feature 784918..784977 FT /note="1 probable transmembrane helix predicted for BP0763 FT by TMHMM2.0 at aa 12-31" FT misc_feature 785077..785667 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT misc_feature 785704..786297 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT CDS 786400..787308 FT /transl_table=11 FT /gene="cyaX" FT /locus_tag="BP0764" FT /product="probable LysR-family transcriptional regulator" FT /note="Identical to the previously sequenced Bordetella FT pertussis unknown Orf CyaX TR:Q45360 (EMBL:X14199) (285 aa) FT fasta scores: E(): 1.6e-99, 93.411% id in 258 aa, and FT similar to Escherichia coli transcriptional activator FT protein IlvY or B3773 SW:ILVY_ECOLI (P05827) (297 aa) fasta FT scores: E(): 1.3e-09, 26.733% id in 303 aa" FT /protein_id="CAE41070.1" FT /translation="MMVMDLRWFQDFLTLAECGQFTTAAELRHVSQSAFSRRIQSLETW FT VGTPLIDRGCFPTRLTAAGEQFRSAAAEIVRKVIDARGEAGATGHDSMVLRVAMPHCLA FT TSRFPAWCARWQQVGGAASLRLHVGNVHDSVEWLAAGVVDLLVCFRHAVEDIQLDAQSY FT MRAGVEADVLRLYRPAGMALDEAELACEAPQARYPYVSYAQGAYFRRLIELSCGPLLQR FT AVLQRVCETDFVDGARDLVRAGVGLAWLPDSSARAAVEHGEIVAVADRRCAIPMEICMY FT ARRHGPAQEAVERVFDQFGRG" FT misc_feature 786415..786840 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 786454..786519 FT /note="Predicted helix-turn-helix motif with score 1182 FT (+3.21 SD) at aa 19-40, sequence GQFTTAAELRHVSQSAFSRRIQ" FT misc_feature 786457..786549 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS 787373..788287 FT /transl_table=11 FT /locus_tag="BP0765" FT /product="probable extracellular solute-binding protein" FT /note="Similar to Escherichia coli amino-acid ABC FT transporter binding protein YbeJ precursor YbeJ or B0655 FT SW:YBEJ_ECOLI (P37902) (302 aa) fasta scores: E(): 2.3e-50, FT 47.038% id in 287 aa, and to Pseudomonas aeruginosa FT probable binding protein component of ABC transporter FT Pa1342 TR:Q9I402 (EMBL:AE004563) (302 aa) fasta scores: FT E(): 2.5e-52, 47.797% id in 295 aa. Also similar to BP0057, FT 51.325% identity (52.013% ungapped) in 302 aa overlap." FT /protein_id="CAE41071.1" FT /translation="MKRLLNALTAALAIGAAAAGQAHAADLDGTLKKISDTGVITIGHR FT ETSIPFSYYDANQKPVGYSIDICTRIVDAVKTRIKRDDIQVKYLPVTSATRIPLMGNGT FT IDLECASTSNTLDCQKQVAFSVTTFVTGNRFISLKSANLKTIDDLKGKTVASTSGTANI FT RQANEINEARSLGMKVVPVKEHAEGFLMVETGRAAAFIMDDILLYGLAANAKEPDRYQV FT SGDSLSIEPYAIMLRRDDPQFKALVDDTIKSLYASGDFEALYKRWYQSPLPPKGINLNV FT AMSEVLKRVVATPTDSGDPVAYK" FT misc_feature 787373..787444 FT /note="Signal peptide predicted for BP0765 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT misc_feature 787421..787453 FT /note="ScanRegExp hit to PS00626, Regulator of chromosome FT condensation (RCC1) signature 2." FT misc_feature 787490..788182 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT CDS join(788395..789117,789117..789128) FT /pseudo FT /transl_table=11 FT /gene="gltJ" FT /locus_tag="BP0766" FT /product="glutamate/aspartate transport system permease FT protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 241. The frameshift occurs within FT a polymeric tract of (G)5. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT glutamate/aspartate transport system permease protein GltJ FT or B0654 SW:GLTJ_ECOLI (P41074) (246 aa) fasta scores: E(): FT 1.7e-37, 44.635% id in 233 aa, and to Pseudomonas FT aeruginosa probable permease of ABC transporter Pa1341 FT TR:Q9I403 (EMBL:AE004563) (248 aa) fasta scores: E(): FT 1.4e-39, 47.639% id in 233 aa. Also similar to BP0056, FT 57.759% identity (58.515% ungapped) in 232 aa overlap." FT /db_xref="PSEUDO:CAE41072.1" FT misc_feature 788758..788979 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 788761..788847 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign." FT variation 789114..789118 FT /note="(G)5 in pertussis; (G)6 in parapertussis" FT CDS 789125..789808 FT /transl_table=11 FT /gene="gltK" FT /locus_tag="BP0767" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="Similar to Escherichia coli glutamate/aspartate FT transport system permease protein GltK or B0653 or Z0803 or FT Ecs0692 SW:GLTK_ECOLI (P41075) (224 aa) fasta scores: E(): FT 6.2e-33, 48.214% id in 224 aa, and to Pseudomonas FT aeruginosa probable permease of ABC transporter Pa1340 FT TR:Q9I404 (EMBL:AE004563) (222 aa) fasta scores: E(): FT 3e-32, 45.701% id in 221 aa. Also similar to BP0055, FT 56.696% identity (56.696% ungapped) in 224 aa overlap." FT /protein_id="CAE41073.1" FT /translation="MSSFDYQAIIDALPYLFLTGLRFSLLLTLSSAAGGVVLGALLAIA FT RLYGRRWVAWPAAIYVNLFRSLPLVLVIFLIYFILPYLLQWITQAERPIVLGATGSAFV FT TFILFEAAYFSEIIRAGIGSVGPGQYAAGSALGLTHGQVLRKVILPQAVRNMLPVLLTQ FT VIVIFQETALVYVLSLPDFLGAATKIAQRDNRLVEMYVLVAVVFFVLSFTASRGVRALR FT ARLGA" FT misc_feature join(789191..789259,789320..789388,789401..789469, FT 789593..789661,789719..789778) FT /note="5 probable transmembrane helices predicted for FT BP0767 by TMHMM2.0 at aa 23-45, 66-88, 93-115, 157-179 and FT 199-218" FT misc_feature 789485..789718 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS 789825..790568 FT /transl_table=11 FT /gene="gltL" FT /locus_tag="BP0768" FT /product="glutamate/aspartate transport ATP-binding FT protein" FT /note="Similar to Escherichia coli glutamate/aspartate FT transport ATP-binding protein GltL or B0652 or Z0802 or FT Ecs0691 SW:GLTL_ECOLI (P41076) (241 aa) fasta scores: E(): FT 5.2e-51, 65.000% id in 240 aa, and to Pseudomonas FT aeruginosa probable ATP-binding component of ABC FT transporter Pa1339 TR:Q9I405 (EMBL:AE004563) (244 aa) fasta FT scores: E(): 5.5e-57, 69.262% id in 244 aa. Similar to FT several B. pertussis CDSs: BP1181, P3828, BP1534, BP1855, FT BP1575, BP1362, P0054, and BP1510." FT /protein_id="CAE41074.1" FT /translation="MELLSMIEIERLGKCYGDLPVLKDCSLAVARGEVVVVCGPSGSGK FT STLIKCVNRLEPFESGRIVVDGTDVGAPGTDLPALRARVGMVFQHFELFPHLSVLENVC FT LGQMSVLGRSRAQARAKADALLERVGVAAHRDKHPGQLSGGQQQRVAIARALAMDPVVM FT LFDEPTSALDPEMIGEVLDVMTGLARDGMTMMVVTHEMGFARRVADRIVFMEAGEIIDD FT VASAEFFGSAASPRSREFLSRIISH" FT misc_feature 789918..790475 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 789939..789962 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 790248..790292 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 790598..791458 FT /transl_table=11 FT /locus_tag="BP0769" FT /product="probable aminotransferase" FT /note="Similar to Staphylococcus aureus D-alanine FT aminotransferase TR:Q9KWZ6 (EMBL:Y14816) (282 aa) fasta FT scores: E(): 4.4e-32, 39.130% id in 276 aa, and to Brucella FT suis hypothetical 32.0 kDa protein TR:CAC67779 FT (EMBL:AJ305234) (289 aa) fasta scores: E(): 1.5e-47, FT 48.387% id in 279 aa" FT /protein_id="CAE41075.1" FT /translation="MSSLFYINGSFVPAEQARVPAMDRGFLFGDGVYEVMAVIDGMLLE FT FERHAARLARSLGEIGIANPLPRERLLAVCRELVSRAGLREGSVYVQVTRGADARRDFA FT FPSGVEPTVMLFTSEKDLRVNPLAQSGVQVATVPDLRWQRRDIKSVSLLAQVLAKQAAQ FT ARGAFEAVMVDAQGVVTEGSSSSVLLVNAAGEIVVRPLSQDILPGCTRAAVLELARERD FT MAMVERPFTLDECRQAREVILTSALQFVLPVIAVDGEPVADGRPGPVCAALRELYLRHT FT LATAL" FT misc_feature 790619..791431 FT /note="HMMPfam hit to PF01063, Aminotransferase class IV" FT CDS complement(791466..792032) FT /transl_table=11 FT /locus_tag="BP0770" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smb20087 TR:CAC48487 (EMBL:AL603642) (201 aa) fasta FT scores: E(): 0.00043, 27.807% id in 187 aa, and to FT Rhizobium loti Mll2445 protein Mll2445 TR:Q98ID9 FT (EMBL:AP002999) (200 aa) fasta scores: E(): 9e-06, 28.495% FT id in 186 aa" FT /protein_id="CAE41076.1" FT /translation="MSLIVAARFDTFPDVENAAQRLFSEGFTKQDVHVFYVNSAGEHSR FT YAYGGDRRSDPDSGRADMGAILGAALFGLAFAIAGGFIVAGLNESTIAMLAAAGVGAYI FT GSLFGALWVTGHLARKRGEAAPVDHPEVRPAGLLLALHTDPTRETLACQVLRAANGHDV FT EHAEGVWRDNRWQDFDPLKPPQREP" FT misc_feature complement(join(791694..791759,791772..791837)) FT /note="2 probable transmembrane helices predicted for FT BP0770 by TMHMM2.0 at aa 65-87 and 91-113" FT CDS complement(792121..793077) FT /transl_table=11 FT /locus_tag="BP0771" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 3e-27, 34.727% id in 311 aa, and to Alcaligenes eutrophus FT hypothetical 35.6 kDa protein in gbd 5'region precursor FT SW:YGB7_ALCEU (Q44018) (327 aa) fasta scores: E(): 3.9e-30, FT 37.294% id in 303 aa" FT /protein_id="CAE41077.1" FT /translation="MKSINKYLAATLASLGLAAGAAATDFPKNEVRLVVNYGAGGNTDV FT ASRALAKGMEKPLGKPVIVENKPGALGTIGPGYVARQAPDGYTVGVVTYSTQAIMPHLM FT KLPYTMDDFDFVAGVGRYRYGITVRADSPYKTLQDLVEAAKKPNGMFFGAPSSPNNLAL FT LELGRLTGGKFEQVSYKSGSETVTALLGGQVDVIVQNPSDVLPHIRDGKLRMIASASPM FT RWPELPEVPTIQESGWPVQIDSWIGLATPRGAPADVLAKLQQAALAAVADPVTRDSFEK FT LGVDPASLKGSEYAELLKQGHEEMGRMIRDANLPRIN" FT misc_feature complement(793009..793077) FT /note="Signal peptide predicted for BP0771 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.868 between residues 23 and 24" FT CDS complement(793122..793874) FT /transl_table=11 FT /locus_tag="BP0772" FT /product="putative acetoacetyl-CoA reductase" FT /EC_number="1.1.1.36" FT /note="Similar to Zoogloea ramigera acetoacetyl-CoA FT reductase PhbB SW:PHBB_ZOORA (P23238) (241 aa) fasta FT scores: E(): 2.3e-25, 38.710% id in 248 aa, and to FT Azospirillum brasilense nodulation protein G NodG FT SW:NODG_AZOBR (P17611) (246 aa) fasta scores: E(): 8.7e-26, FT 35.458% id in 251 aa" FT /protein_id="CAE41078.1" FT /translation="MSEPRIAVVTGAGRGIGLASARALLAAGNHVVTIDRGAIDTQALF FT GAQHDRVTAASADVQDLPALQALKARVEAELGPVSILVNNAGVSPKRPDGRSSGILEVS FT EEEWAQVLGINLTCVMRLCQLFLPAMRDQGYGRIVNVASLAGRARSIVAGPSYMASKAG FT VIGLTRAIASEMGPYGITANCVAPGRILTEMAQQAGPEVNQRYAEQIPVRRLGTPEEVG FT TSIAFLCGPDAGFVNGAIIDINGGFYMP" FT misc_feature complement(793146..793238) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(793296..793862) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature complement(793503..793568) FT /note="Predicted helix-turn-helix motif with score 996 FT (+2.58 SD) at aa 103-124, sequence VSEEEWAQVLGINLTCVMRLCQ" FT CDS complement(793871..795616) FT /transl_table=11 FT /locus_tag="BP0773" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Methanococcus aeolicus acetohydroxyacid FT synthase large subunit IlvB TR:O08353 (EMBL:U35458) (599 FT aa) fasta scores: E(): 2.2e-48, 32.105% id in 570 aa, and FT to Methanococcus maripaludis acetohydroxyacid synthase FT large subunit IlvB TR:Q9Y8J0 (EMBL:AF118061) (587 aa) fasta FT scores: E(): 3.6e-46, 32.737% id in 559 aa" FT /protein_id="CAE41079.1" FT /translation="MSTLPKPLSAPGFTLDGTVAHAIVRALARHGVDTLFGQSLPSLLH FT LAAEQAGMRQVAYRTENAGGYMADAYARVSGKPAIVTAQNGPAATLLVAPLAEAMKVSV FT PVIALVQDVNRDQTDRNAFQELDHIALFQPVTKWVRRVTEASRIEDYVDQAFAAACSGR FT PGPVALLLPADLLAAAAPAPALPRNNSLGHFPLDRSVAAPQAIARAASLLAQAQRPVVV FT AGGGVHISDASAAMAALQETAHLPVATTVMGKGAVDERHPLSIGVVGSNMGPNGPTRFQ FT RRLIAEADVVLLVGNRTNQNGTDSWQLYPKNAQYIHIDVDGLEVGRNYEALRLVGDARL FT TLEALTAALAGQDLAARRQARAGVEQAIALGHEKHLEDSAAVRLSDASPIRPERIMHEL FT QQQLDEQSIVVADASYSSIWITHFLTALRPGMRFLTPRGLAGLGWGFPMAMGAKLANPA FT AEVYALVGDGGFGHVWSELETAARMGVKVTLIVINNGILGFQKHAENVKFGAHTSAVAF FT APVNHTAIARACGCTGIRVEDPAQLADALAQARAASGSALIEVICDENAFPPITFFTPD FT AGVQA" FT misc_feature complement(793937..795538) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT misc_feature complement(794210..794269) FT /note="ScanRegExp hit to PS00187, Thiamine pyrophosphate FT enzymes signature." FT CDS 795701..796435 FT /transl_table=11 FT /locus_tag="BP0774" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa5525 TR:Q9HT48 (EMBL:AE004965) FT (246 aa) fasta scores: E(): 8.4e-20, 37.069% id in 232 aa, FT and to Rhizobium loti probable transcriptional regulator FT Mlr1038 TR:Q98LF9 (EMBL:AP002996) (226 aa) fasta scores: FT E(): 1e-19, 34.483% id in 203 aa" FT /protein_id="CAE41080.1" FT /translation="MATLANRPLFAPIPPSMNMPLAPMARENIAAVIYRQLKQLLMMGE FT LKPGEILTLRMLTERLGVSQTPVREALLQLVSERALAMSRGKSVSVPAPTREKLQELRD FT IRLTLEVLATERATPRISDAEIKTLERLHREMVRYKNSEQREGVLKTNYEFHFTLYNAS FT GMPDLVAIIEGLWAQTGPSLTYLYQKPFAHLYDAHPHLPLIEALRRHDVEAAVAAIRRD FT VAGYGAALMERLPAEAGQPAGG" FT misc_feature 795797..795973 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature 795854..795919 FT /note="Predicted helix-turn-helix motif with score 1003 FT (+2.60 SD) at aa 34-55, sequence LTLRMLTERLGVSQTPVREALL" FT CDS 796752..797774 FT /transl_table=11 FT /locus_tag="BP0775" FT /product="hypothetical protein" FT /note="Similar to the C-terminal region of Serratia FT marcescens extracellular serine protease precursor FT SW:PRTS_SERMA (P09489) (1045 aa) fasta scores: E(): FT 1.2e-19, 30.435% id in 276 aa, and to Rhizobium loti serine FT proteinase Mlr1935 TR:Q98JH8 (EMBL:AP002998) (1213 aa) FT fasta scores: E(): 1.9e-29, 35.275% id in 309 aa. Also FT similar to the C-terminal regions of BP1661 (43.344% FT identity in 323 aa overlap) and BP1110 (42.722% identity in FT 316 aa overlap)" FT /protein_id="CAE41081.1" FT /translation="MSLHPVVCLDRSRRGPGDFPLLSMSAVAMRRGVSALLGVAGTLAL FT AAPAWAQARQEAASAAHPTWMAAAGNWQVLEGGPGVARVKQRTTGVYAGSEHALGAGLR FT LGGVLGLTRSTARFDDLYAKGHVNSYSLALYGARTVAAGAGDFNAVAGAAYTWHDMDTR FT RHFHWAGTSQTLTADTHGSTFQAFGELGYRWRASARVQIEPFAALAWRDVRTRAFVESG FT GWAAISAGPSRLTQTTTTLGVRGEAGYMLGPAPGKLRLTLGWRRAFGDVDPQATLVLDG FT GNALAATGAPIARDAALAGLGAELALSRSAAIGLAYIGQYSGGNREHTGSLSLRWLFGA FT " FT CDS complement(797790..798500) FT /transl_table=11 FT /locus_tag="BP0776" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Chelatobacter heintzii nta operon FT transcriptional regulator NtaR or NmoR SW:NTRA_CHEHE FT (P54988) (210 aa) fasta scores: E(): 5.8e-21, 40.476% id in FT 210 aa, and to EDTA-degrading bacterium BNC1 EmoR TR:Q9F9T1 FT (EMBL:AF176664) (207 aa) fasta scores: E(): 7.5e-20, FT 37.255% id in 204 aa" FT /protein_id="CAE41082.1" FT /translation="MYKTTTEPAEKGRRAFSQVLEKLREMVISYEIKPGERLNEVALAE FT RLGVSRTPVREALHFLARDGFLAEAGRGYVRRPLNLKEMIDLYETREVLEVACLQLAAG FT RATPQRLDALEAFLAESRAKSPDLPVTELVSLDETFHHMLAEMSGNHELQRILHNVNER FT IRFIRWINMERIGRDKTQAEHAAILAALRAGDIATAQQNLRSHISKRTEQIKECIAQGL FT AHIYLDDDETSPGA" FT misc_feature complement(798306..798446) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(798318..798392) FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(798324..798389) FT /note="Predicted helix-turn-helix motif with score 1086 FT (+2.89 SD) at aa 42-63, sequence LNEVALAERLGVSRTPVREALH" FT CDS complement(798657..799664) FT /transl_table=11 FT /locus_tag="BP0777" FT /product="probable Zinc-binding dehydrogenase" FT /note="Similar to Rhodopseudomonas palustris putative FT NADPH:quinone oxidoreductase BadC TR:O07459 (EMBL:U75363) FT (339 aa) fasta scores: E(): 5.9e-22, 34.393% id in 346 aa, FT and to Halobacterium sp alcohol dehydrogenase Adh4 or FT Vng1821G TR:Q9HP38 (EMBL:AE005083) (347 aa) fasta scores: FT E(): 5.3e-29, 43.875% id in 351 aa" FT /protein_id="CAE41083.1" FT /translation="MKAVVIHGHGGPEVLQYDTAFPDPKAGEGDVILRVKATSINYHDV FT FTRRGMPGIKLDFPVIMGLDVAGEIVEVGPGVQGWKAGDRVLVDPINRAEGGLMGETVH FT GGLAELCKAREHQLIRIPDGVSYEQAAALPVAFGTAYRMMHTIGQVQAGEKVLVLGASG FT GVGVGCVMLAKIAGAQVIACASSEAKMQRLRELGADHVINYADTDFAKAIYELYGKPHR FT RKFDGGVDVAVNFTGGDTWVKSMRCLRRGGRLLTCGATAGYDPQTDLRFIWTFELNIRG FT SNGWMREDLDALLGLVQSGKMQVPIDRVLSLQDAGEALRLIEDREVMGKVVVTP" FT misc_feature complement(798660..799625) FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenases" FT CDS complement(799705..801237) FT /transl_table=11 FT /locus_tag="BP0778" FT /product="putative acetyl-CoA synthetase" FT /note="Similar to Amycolatopsis spHR167 feruloyl-CoA FT synthetase Fcs TR:Q9EY88 (EMBL:AJ290449) (491 aa) fasta FT scores: E(): 2.9e-35, 33.758% id in 471 aa, and to FT Rhizobium loti probable acid-CoA ligase mlr1843 TR:Q98JP7 FT (EMBL:AP002998) (495 aa) fasta scores: E(): 1.3e-35, FT 31.911% id in 492 aa" FT /protein_id="CAE41084.1" FT /translation="MRAAPANLGALFSPARDPAAIALIDLGGESGPREYTYAELDAQAD FT GVARGLPAGARAAILSANRMEFLAAYLGIMRAGLIAVPVNYRLPPDSIDFILRDSGAAL FT VFCDGPRRDAYTVALPSVEFGAGGAGGYARFLDPGPCEAARPADDQPALFLYTSGSTGR FT PKGVKISHAGYLWTVRQRTASTDYGGHCFLVAAPLYHMNALNTIKLALAGQGRLVLMPQ FT FSPAGYLDAIERYRCTWLTAIPTMIALLARETGALAGADLASVAMVRLGSEPLTQRIAD FT SARAMFPRAAFGNGYGATETGALVFGPHPQGLAQPVLSVGYPHPAVQLRLADGADLDAA FT TGVLQVRSPALMLGYHGLPEQTAAAMTHDGFYITGDVMRRDEHGFHYFIGRADDMFVCG FT GENIYPGEVEKMLERHPAIAQACIVPLADPLKGMKPVALVVSRPDATLSEQEVKDYALA FT HGPAYQHPRAVRFVDEMPISSTGKVNRKAALLAAELIAAASPLTQGGHALRR" FT misc_feature complement(799969..801132) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature complement(800743..800778) FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(801234..802352) FT /transl_table=11 FT /locus_tag="BP0779" FT /product="conserved hypothetical protein" FT /note="Weakly similar to Vibrio cholerae hypothetical FT protein Vca0936 TR:Q9KL13 (EMBL:AE004420) (312 aa) fasta FT scores: E(): 0.077, 25.258% id in 194 aa. Similar to FT BP2869, 43.785% identity (43.909% ungapped) in 354 aa FT overlap." FT /protein_id="CAE41085.1" FT /translation="MRSKENAMEFHQCYALDYHRARDKFRAAAAAAGASLTQYLHEGRT FT GPDGRPLHTDVARFGRADAPRRLLAISGTHGLEGFFGSAAQIGWMLGDGPASLDPDVAV FT IMVHAINPWGFAHLSRTTENNVDLNRNFIDHGQPHPANPDYAILHPQLLREDWSSAAVA FT AAQQAMEDFTARHGEDRLYDTLARGQYSHPDGLNYGGTAREWSNLTLERIVRDHLAGAR FT KVALIDWHTGIGGYGEPFFLCFNEEGGPLHELAARWWGRDRIVGQRPHGKARPNYQGLL FT FHGVQALLGDVPMCGAVIEFGTRGWHMRRLLRLDLWLKFKADPASERYAMLRADLLDSF FT CPYDQVWREGTLRHAQEITRQAVAGLAAWTET" FT CDS complement(802349..803131) FT /transl_table=11 FT /locus_tag="BP0780" FT /product="putative membrane protein" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm1265 TR:Q9CLG9 (EMBL:AE006165) (254 aa) fasta FT scores: E(): 1.9e-27, 35.628% id in 247 aa, and to FT Agrobacterium tumefaciens Agr_l_128gMp TR:AAK88848 FT (EMBL:AE008228) (267 aa) fasta scores: E(): 4.4e-29, FT 36.052% id in 233 aa" FT /protein_id="CAE41086.1" FT /translation="MSKSVKSFLYPLITGVVLVILWFASIRIFSVPNYLLPTPEAVLNT FT LRIGYVEGQYWPHFLFTLQSTVYGYLIGCGMALVVGTVLAESETFEQFIYPYIIALQST FT PKVAIAPLLLVWFGFGMASKVVMVALMSFFPMFINTVVGIRQANPAMLDLMKAFKASRS FT HVFFHVKLPAASGHIFAGLQISVVLSLIGAVVSEFISSSQGLGYLIQSASVNMDVATMF FT ACLFSLVVIGLTGTNLIRFLHRKLVFWEQSTTATVQPE" FT misc_feature complement(join(802409..802474,802535..802600, FT 802700..802756,802787..802852,802889..802954, FT 803045..803110)) FT /note="6 probable transmembrane helices predicted for FT BP0780 by TMHMM2.0 at aa 7-29, 59-81, 93-115, 125-144, FT 177-199 and 219-241" FT CDS complement(803143..804006) FT /transl_table=11 FT /locus_tag="BP0781" FT /product="probable ABC transporter, ATP-binding component" FT /note="Similar to Arthrobacter keyseri transporter ATPase FT PtrA TR:Q9AGL2 (EMBL:AF331043) (275 aa) fasta scores: E(): FT 2.6e-35, 48.963% id in 241 aa, and to Pseudomonas FT aeruginosa probable ATP-binding component of ABC FT transporter Pa2294 TR:Q9I1I1 (EMBL:AE004655) (284 aa) fasta FT scores: E(): 1.1e-36, 46.457% id in 254 aa" FT /protein_id="CAE41087.1" FT /translation="MTSLNLSMIEGGRPASRAAAATLDAVAGAGDGAALLTANNLSVVY FT RTSKGPITAVDNLSLQLGAGEFVSVLGPSGCGKSTLIKVFSGLLKPSGGKALLNGTPID FT EPRGDVGIVFQQPTLLPWKTVLDNVLVPIRALGMNVAEGRAKAMELLRLVGLEKFASNY FT PSELSGGMQQRVGIARGLIHDPALLLMDEPFSALDTMTRDRMSIELQRIWMATRKSALF FT ITHSIAEAVFLSDRIVVMSARPGRIIREVTVNLPRPRTLATLTDPEFTRLCGELRELFD FT QLVQFD" FT misc_feature complement(803278..803814) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(803464..803508) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(803770..803793) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(804025..805122) FT /transl_table=11 FT /locus_tag="BP0782" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens Agr_l_3061p FT TR:AAK90103 (EMBL:AE008354) (316 aa) fasta scores: E(): FT 3.6e-08, 27.181% id in 298 aa, and to Rhizobium loti FT Mll8573 protein Mll8573 TR:Q982M7 (EMBL:AP003014) (342 aa) FT fasta scores: E(): 7.9e-11, 26.796% id in 362 aa. Also FT similar to BP2866, 46.197% identity (47.536% ungapped) in FT 355 aa overlap." FT /protein_id="CAE41088.1" FT /translation="MIGIEHLKRHARRGILAGAAAMALTAAGGAANAAEKVTFAYGINI FT SLSNAPTLMAIGMGYFKEAGLDVQATFFQGAAVMLPQVTQKHITFGWITPDPLVISRQP FT GRDALPVKMFYNGIYLSPFEVVVTKSSPARSLADLKGKKIGVGAMSWGNLAVTKAMMKK FT LGLELQRDYEFVPVGVGATAFRALADDKVQALNLFDTFHVQMEQMGADLRRLPMDQSYR FT ELFSSGWIAHQDTLRERPELVVAFARAAAKGVVACNANPQACVQNFWKLYPATKPADGT FT EEKKLADAVQILKVRLATMLPEQGPQQMGYYTEQSWHDYVDVLHEGGQLSTKDVDVKPL FT YTNQFVKDINDFDAAAVVSAAKQLK" FT misc_feature complement(805024..805122) FT /note="Signal peptide predicted for BP0782 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.992 between residues 33 and 34" FT CDS complement(805191..806117) FT /transl_table=11 FT /locus_tag="BP0783" FT /product="putative dioxygenase" FT /note="Similar to Rhizobium loti Mlr0372 protein Mlr0372 FT TR:Q98MZ7 (EMBL:AP002994) (296 aa) fasta scores: E(): FT 0.00021, 24.510% id in 306 aa, and to Agrobacterium FT tumefaciens Agr_c_2627p TR:AAK87216 (EMBL:AE008068) (292 FT aa) fasta scores: E(): 0.022, 28.525% id in 305 aa" FT /protein_id="CAE41089.1" FT /translation="MTRTEPDQPMGAAPAGLDHVGLYAHDMDAAAAMYQRLGFTLTPLS FT QHSGTHAVTREVVKAGIANRCAMLGHGYIELVAVVDPALDLRGIPEGLARYAGMHIVAF FT DTPDPGQRIAALREAGFAAEPGVLQRYIDTADGPRLARFSQVRTPRQAMPEGLILTLRH FT ETPELLWQARYMDHPNGARALAAAIVAVEDVDAAAARYARYLGVPAERRGGEAWFTLRS FT GRLALVDQAALAARLPGSAAPTLPFPAALAVEVDNLSRTAAVLDDNQVAYRRAGGQLTV FT AARDAGGAAVIFCANAEAAFAGAPEEP" FT misc_feature complement(805230..805550) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT misc_feature complement(805683..806051) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS complement(806152..807846) FT /transl_table=11 FT /gene="ilvB" FT /locus_tag="BP0784" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme III large subunit IlvI or B0077 SW:ILVI_ECOLI FT (P00893) (574 aa) fasta scores: E(): 1e-42, 30.515% id in FT 544 aa, and to Methanococcus aeolicus acetohydroxyacid FT synthase large subunit IlvB TR:O08353 (EMBL:U35458) (599 FT aa) fasta scores: E(): 5.4e-59, 34.581% id in 561 aa" FT /protein_id="CAE41090.1" FT /translation="MTQLNGAEAMVRMLQLNGVKHIFGLCGDTSLPFCDALQRLDHGME FT HILTRDERSAAYMADAYARVTGKVGVCEGPSGGGATYLLPGLVEANESSVAVLGITSDV FT SVGSRGKYPLTELDQEALYRPLTKWNTTIDRADQIPGAVRAAFRAMTTGRPGTAHLCLP FT YDVQKHEVDPADVWAQPGHDRFPAMRFAPDPAAIEQAAARLVGARAPVILCGGGVVISG FT ACAALEELAVTLNAPVCTTVSGQGSLADTHPLNAGVVGSNGGILATRAVLADADVVLLI FT GCRAGSTSTEHWRFPSREVPILHIDSDPMVIAANYRTDVAMVGDALLALQALNREVHAR FT IDARPTDAVDGKAVAAKAKGAKLAALQPLAASLDAPIRPERVVDALNRLLPAESVVVAD FT PGTPCPYFSAYFEASKPGRHFITNRAHGALGFSMAAGMGAAIGRPSAKVVSVMGDGSFG FT FTVGEMETIVRRKVPLLMIVLSNSVYGWIKASQKAGYQERYFSVDFNRTDHARVAEAYG FT VKAWRVEDPRELDGVLKAAIEYGGPALVDIIVQPLQEAAAPVSQWMG" FT misc_feature complement(806206..807807) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT misc_feature complement(806479..806538) FT /note="ScanRegExp hit to PS00187, Thiamine pyrophosphate FT enzymes signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(808046..808981) FT /transl_table=11 FT /locus_tag="BP0785" FT /product="putative mechanosensitive channel protein" FT /note="Similar to Rhizobium loti probable integral membrane FT protein Mlr0973 TR:Q98LL9 (EMBL:AP002996) (410 aa) fasta FT scores: E(): 1.5e-13, 28.019% id in 207 aa, and to FT Rhizobium meliloti conserved hypothetical membrane protein FT Smb20863 TR:CAC49557 (EMBL:AL603646) (343 aa) fasta scores: FT E(): 6.1e-13, 26.054% id in 261 aa" FT /protein_id="CAE41091.1" FT /translation="MIPGSRIAWLLWPTVLCSLSVVVYVFHAYLFQRYLPGSNPESFRR FT FSAAAAFYAFAWLLARMAAAALTRKAKKKRKTPRLLRELVSATLFAIATVATIGVFLGQ FT SAGGILASSGLIIAILGFAIRNVLADVLSGIAIGVEAPYRIGDWVGFDATIRGRVTEIG FT WRTTRILTPNDTYMILPNSQISRQMLTNYSAPRKQYQGELEIVLSHDISISDGKQLLFD FT AALSTSPAESLAPGQKPRVRATAYTAEGVTYKIKYWVPQFSDSTDCRDAILVAIDDAIR FT SQGLALPVATPPRPQAIALRQPDTPDNPGA" FT misc_feature complement(808118..808738) FT /note="HMMPfam hit to PF00924, Mechanosensitive ion FT channel" FT misc_feature complement(join(808598..808663,808676..808741, FT 808778..808843,808889..808954)) FT /note="4 probable transmembrane helices predicted for FT BP0785 by TMHMM2.0 at aa 9-31, 46-68, 80-102 and 106-128" FT CDS complement(809087..810037) FT /transl_table=11 FT /locus_tag="BP0786" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41092.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 809087..809118 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(809087..810139) FT misc_feature complement(809123..809656) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(809714..809779) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(810108..810139) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(810119..810730) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0787" FT /product="N-terminal region of a putative membrane protein FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP2450. Similar to Escherichia coli hypothetical protein FT YhfK or B3358 SW:YHFK_ECOLI (P45537) (700 aa) fasta scores: FT E(): 0.036, 24.365% id in 197 aa, and to Pyrococcus abyssi FT hypothetical 47.1 kDa protein Pab0655 TR:Q9V021 FT (EMBL:AJ248286) (431 aa) fasta scores: E(): 1.5, 24.684% id FT in 158 aa" FT /db_xref="PSEUDO:CAE41093.1" FT misc_feature complement(join(810230..810295,810341..810406, FT 810428..810493,810629..810694)) FT /note="4 probable transmembrane helices predicted for FT BP0787 by TMHMM2.0 at aa 21-43, 88-110, 117-139 and FT 154-176" FT CDS 811201..812916 FT /transl_table=11 FT /gene="ilvI" FT /locus_tag="BP0789" FT /product="acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme III large subunit IlvI or B0077 SW:ILVI_ECOLI FT (P00893) (574 aa) fasta scores: E(): 4.5e-129, 56.098% id FT in 574 aa, and to Neisseria meningitidis acetolactate FT synthase III, large subunit Nmb1577 TR:Q9JYI0 FT (EMBL:AE002508) (575 aa) fasta scores: E(): 2.2e-152, FT 64.311% id in 566 aa" FT /protein_id="CAE41094.1" FT /translation="MELNGADIVVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHI FT LVRHEQAAVHAADAYSRASQKVGVCLVTSGPGVTNAVTGIATAYMDSIPMVIISGQVPT FT AAIGEDAFQECDTVGITRPCVKHNFLVRDVKDLAETMRRAFFIARTGRPGPVLVDIPKD FT ITVAQCKYAPPKGEISMRSYAPVNKGHQGQIKKAVQMLLHAERPMIYTGGGVILSDAAE FT ALRHLVDQTGAPCTNTLMGLGAMPATDHRFLGMPGMHGTYEANMAMQHCDVLLAIGARF FT DDRVIGNPRHFAQNARKIIHIDIDPSSISKRVRVDVPIVGNVKDVLADLSAQYDLARAD FT AKPAPIEKWWQQIEAWRGKECLKYAGSDEVIKPQFVVEKLWEVTGGDAFVTSDVGQHQM FT WAAQYYKFNKPRRWINSGGLGTMGVGLPYAMGVQMANPGADIAVITGEASIQMNIQELS FT TCHQYHLTPKIICLNNRFLGMVRQWQQIDYGSRYSESYMDSLPDFVKVAEAYGHVGLRI FT ERPADVEPALREAFKKHKDRLVFLDFITDRTENVWPMVKAGRGLTEMLLGSEDL" FT misc_feature 811237..812829 FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT CDS 812927..813418 FT /transl_table=11 FT /gene="ilvH" FT /gene_synonym="brnP" FT /locus_tag="BP0790" FT /product="acetolactate synthase small subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme III small subunit IlvH or BrnP or B0078 FT SW:ILVH_ECOLI (P00894) (163 aa) fasta scores: E(): 3.7e-31, FT 55.828% id in 163 aa, and to Neisseria meningitidis FT acetolactate synthase isozyme III small subunit IlvH or FT Nma1765 or Nmb1576 TR:Q9JRF4 (EMBL:AL162757) (163 aa) fasta FT scores: E(): 8.5e-38, 66.871% id in 163 aa" FT /protein_id="CAE41095.1" FT /translation="MKHVISVLMENEPGALSRVVGLFSARGYNIETLTVAPTEDATLSR FT LTVVTVGSDEVIEQITKHLNRLVDVVKVVDLTEGAHIERELMLIKVRAVGKEREEMKRM FT ADIFRGRIIDVTDKSYTIELTGVQEKIQAFIEALDRSAILETVRTGVSGIGRGERILKI FT " FT misc_feature 812927..813040 FT /note="ScanRegExp hit to PS00430, TonB-dependent receptor FT proteins signature 1." FT misc_feature 812933..813154 FT /note="HMMPfam hit to PF01842, ACT domain" FT CDS 813491..814507 FT /transl_table=11 FT /gene="ilvC" FT /locus_tag="BP0791" FT /product="ketol-acid reductoisomerase" FT /EC_number="1.1.1.86" FT /note="Similar to Zymomonas mobilis ketol-acid FT reductoisomerase IlvC SW:ILVC_ZYMMO (Q9X5F8) (339 aa) fasta FT scores: E(): 3e-80, 62.242% id in 339 aa, and to Neisseria FT meningitidis ketol-acid reductoisomerase IlvC or Nmb1574 FT SW:ILVC_NEIMB (Q9JYI2) (337 aa) fasta scores: E(): 1.7e-93, FT 73.373% id in 338 aa" FT /protein_id="CAE41096.1" FT /translation="MKVFYDKDCDLSLVKGKTVAIIGYGSQGHAHALNLHDSGVKVVVG FT LRKGGASWNKAANAGLEVAEVAEAVKRADIVMMLLPDENIAAVYRDEVHANIKAGAALA FT FAHGFNVHYGQVVPREDIDVIMAAPKAPGHTVRSTYSQGGGVPHLIAVYQDKSGSARDV FT ALSYASANGGGRAGIIETNFREETETDLFGEQAVLCGGTVELIKAGFDTLVEAGYAPEM FT AYFECLHELKLIVDLIYEGGIANMNYSISNNAEFGEYETGPKVVTDATRQAMRECLTAI FT QTGEYAKKFILENAAGAPTLTSRRRINAESQIEQVGGKLRAMMPWIAANKLVDKAKN" FT misc_feature 813497..814471 FT /note="HMMPfam hit to PF01450, Acetohydroxy acid FT isomeroreductase, catalytic domain" FT CDS 814675..815454 FT /transl_table=11 FT /gene="pssA" FT /locus_tag="BP0792" FT /product="putative CDP-diacylglycerol--serine FT O-phosphatidyltransferase protein" FT /EC_number="2.7.8.8" FT /note="Similar to Agrobacterium sp31749 phosphatidylserine FT synthase TR:AAL01116 (EMBL:AF410774) (274 aa) fasta scores: FT E(): 2.3e-21, 40.930% id in 215 aa, and to Pseudomonas FT aeruginosa phosphatidylserine synthase PssA or Pa4693 FT TR:Q9HVA3 (EMBL:AE004883) (271 aa) fasta scores: E(): FT 2.5e-47, 61.778% id in 225 aa" FT /protein_id="CAE41097.1" FT /translation="MPNFSMRDPENRHRSIYLLPNAFTTAALFAGFYAVVQAMNDRFET FT AAIAIFVAMVLDGMDGRVARLTNTQSAFGEQYDSLSDMTSFGVAPALVIYEWILQDLGR FT WGWLAAFVYVAGAALRLARFNTNIAVVDKRFFQGLPSPAAAALVAGFVWLAIDNKLPIH FT DSIMAWVAFVLTMYAGVAMVSNASFFSGKNFALGRSVPFWGILLVVAVFVFVSSDPPVV FT LFGLFVLYGLSGWVVMAWRWNRARRLQQERRSGHHSP" FT misc_feature join(814723..814791,814987..815040,815077..815145, FT 815173..815241,815254..815322,815335..815403) FT /note="6 probable transmembrane helices predicted for FT BP0792 by TMHMM2.0 at aa 17-39, 105-122, 135-157, 167-189, FT 194-216 and 221-243" FT misc_feature 814852..814920 FT /note="ScanRegExp hit to PS00379, CDP-alcohol FT phosphatidyltransferases signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(815473..816000) FT /transl_table=11 FT /locus_tag="BP0793" FT /product="putative lipoprotein" FT /note="no significant database matches" FT /protein_id="CAE41098.1" FT /translation="MPPIRRPIGRALRLAGAGMLLAALAACANLNQVPPGTPLADVQAQ FT FGAPNFACDLPNGGQRVIWTQQPYGQFAWGANVGPDGRVDRVVEVLTDEHFKVLGTGTW FT TADQVRCEFGPPAEIKQVGLPSVRQVVWSYRYRESRVWNSLMYVYMGREGDRVTRFHPG FT PDPMYDEDWRWH" FT misc_feature complement(815920..815952) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 816294..816563 FT /transl_table=11 FT /gene="rpsO" FT /gene_synonym="secC" FT /locus_tag="BP0794" FT /product="30S ribosomal protein S15" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S15 RpsO or SecC or B3165 SW:RS15_ECOLI (P02371) (88 aa) FT fasta scores: E(): 7.3e-18, 69.136% id in 81 aa, and to FT Photorhabdus luminescens 30S ribosomal protein S15 RpsO or FT RprA SW:RS15_PHOLU (P41120) (88 aa) fasta scores: E(): FT 4.3e-19, 67.045% id in 88 aa" FT /protein_id="CAE41099.1" FT /translation="MSVADIKKSEIVAQFQRAQGDTGSPEVQVALLTARINELTGHFKE FT HMKDHHSRRGLLRMVSRRRKLLDYLKGRNPDSYRALIEKLGLRK" FT misc_feature 816360..816557 FT /note="HMMPfam hit to PF00312, Ribosomal protein S15" FT misc_feature 816408..816500 FT /note="ScanRegExp hit to PS00362, Ribosomal protein S15 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 816654..818813 FT /transl_table=11 FT /gene="pnp" FT /locus_tag="BP0795" FT /product="polyribonucleotide nucleotidyltransferase" FT /EC_number="2.7.7.8" FT /note="Similar to Escherichia coli polyribonucleotide FT nucleotidyltransferase Pnp or B3164 SW:PNP_ECOLI (P05055) FT (711 aa) fasta scores: E(): 2.2e-165, 62.691% id in 721 aa, FT and to Neisseria meningitidis putative polyribonucleotide FT nucleotidyltransferase Pnp or Nma0969 TR:Q9JV72 FT (EMBL:AL162754) (706 aa) fasta scores: E(): 1.9e-172, FT 65.260% id in 711 aa" FT /protein_id="CAE41100.1" FT /translation="MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVV FT AAKKAKAGQDFFPLTVDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFP FT EGFYNDVQVVIHTLSVNPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVL FT NPTATQLKSSKMDLVVAGTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQAAINAIHDL FT VRDAGKPDWDWQPAPKNEALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAM FT AEQAAQAGQPAPDSVGVDNILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLP FT RAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIG FT VPKRREIGHGRLAKRALLPLLPAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDA FT GVPTNDHVAGVAMGLILDSGKFAVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQ FT GITKEIMQVALAQAREGRLHILGKMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGK FT GGATIRALTEETGTQIDISDDGTIVIASVDETQAKEAQRRIVELTADVEVGQIYDGSVL FT RLLDFGAIVQVLPGRDGLLHISEIANYRIANINDVLKVGQPVRVKVIEADDKGRLRLSI FT KAIGGIEQQQSGTAEPAAQSEPQAE" FT misc_feature 816663..817286 FT /note="HMMPfam hit to PF01138, 3' exoribonuclease family" FT misc_feature 817611..818255 FT /note="HMMPfam hit to PF01138, 3' exoribonuclease family" FT misc_feature 818337..818465 FT /note="HMMPfam hit to PF00013, KH domain" FT misc_feature 818520..818738 FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT CDS 818934..819653 FT /transl_table=11 FT /locus_tag="BP0796" FT /product="putative lipoprotein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3069 TR:Q9HZD9 (EMBL:AE004731) (205 aa) fasta FT scores: E(): 3.5e-40, 54.634% id in 205 aa, and to FT Pseudomonas sp hypothetical 28.9 kDa protein Orf58 FT TR:AAK50290 (EMBL:U66917) (257 aa) fasta scores: E(): FT 1.1e-35, 45.852% id in 229 aa" FT /protein_id="CAE41101.1" FT /translation="MTSRRLAALSGWAASVLLAGCIAPGGSGGPRGESMSADQFMQTDF FT NRTVTLEIRDNLASLDTLLDKLYRRNPREWRKSGVADQAAAVARVKRLIEERRPPAGLA FT GLRDIQVLAVSLDPAYGGDRVAAFVYGLADTLIAAHNDKTRIYLSDVLDGQRIYNAARN FT VEAAAWLLASRRTAQGEPLLLANEMSAAATNLSFEREFGAIIGRLDLIANLLGENSRRI FT GINYAQGLLFFNFLPVR" FT misc_feature 818964..818996 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(819650..820600) FT /transl_table=11 FT /locus_tag="BP0797" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41102.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 819650..819681 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(819650..820702) FT misc_feature complement(819686..820219) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(820277..820342) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(820671..820702) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 820741..821958 FT /transl_table=11 FT /gene="tdcB" FT /locus_tag="BP0798" FT /product="threonine dehydratase catabolic" FT /EC_number="4.3.1.19" FT /note="Similar to Escherichia coli threonine dehydratase FT catabolic TdcB or B3117 or Z4469 or Ecs3997 SW:THD2_ECOLI FT (P05792) (329 aa) fasta scores: E(): 1.6e-41, 45.246% id in FT 305 aa, and to Caulobacter crescentus threonine dehydratase FT Cc3635 TR:Q9A2D0 (EMBL:AE006022) (400 aa) fasta scores: FT E(): 4.1e-72, 52.897% id in 397 aa" FT /protein_id="CAE41103.1" FT /translation="MIDLAAIQTARDILRGQVLNTPFTHSRTLSDILGAEIWLKFENLQ FT FTASFKERGALNRMLNLTEAERAAGVIAVSAGNHAQGVAYHAQRMGVPAVIVMPRFTPT FT VKVANTRRFGAEVVLAGDTFDDAKARGYELARERGLVMIHPYDDPAVIAGQGTVALEML FT QARPDLDAIVVGIGGGGLIAGIATAAKAIKPDIEIIGVQTERFPSMYAAVKGVAMESGH FT YTIAEGIAVKSPGTLTQEIVTRLVDHIELVNESDIEHAIVVLLEIEKTVVEGAGAAGLA FT ALLRLQERRDERFRGKRLGLVLTGGNIDPLMLGELIERGMVRAGRLARIRVDLRDLPGA FT LAQATKLIADAHANITEVHHQRAFTTLPVRNVEVDFVLQTRGHDHIQEVIAVLNAAGFA FT ASNHDH" FT misc_feature 820780..821658 FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme" FT misc_feature 821722..821952 FT /note="HMMPfam hit to PF01842, ACT domain" FT CDS complement(821952..822563) FT /transl_table=11 FT /locus_tag="BP0799" FT /product="conserved hypothetical protein" FT /note="Similar to Sphingomonas aromaticivorans hypothetical FT 21.4 kDa protein TR:O85864 (EMBL:AF079317) (196 aa) fasta FT scores: E(): 0.0065, 28.571% id in 161 aa" FT /protein_id="CAE41104.1" FT /translation="MPYLNLIPNPAPPFVVLDACVLMSGIARQLLLRVARTGVFQPVWT FT ERIGEEWRRNAARLWDIPAAALAAQWEATNASFPRALEVDTQPYETGLRYSDPKDFHVI FT AAGLARRARCGLPQAPATLVMTWNLKDFNRSELRRQGLDAFSPDHLLARWWQADPAALR FT DALATVADDYVALGREPLPLAAILQRERLYRLRRLADADQ" FT tRNA complement(822623..822707) FT /note="tRNA Leu anticodon TAA, Cove score 79.53" FT CDS 823197..824174 FT /transl_table=11 FT /locus_tag="BP0800" FT /product="probable zinc-binding dehydrogenase" FT /note="Similar to Rhizobium loti NADPH quinone FT oxidoreductase Mll3767 TR:Q98FI0 (EMBL:AP003002) (326 aa) FT fasta scores: E(): 3e-60, 57.669% id in 326 aa, and to FT Rhizobium meliloti putative oxidoreductase protein Smc00034 FT TR:CAC45525 (EMBL:AL591785) (327 aa) fasta scores: E(): FT 8.3e-58, 53.681% id in 326 aa" FT /protein_id="CAE41105.1" FT /translation="MRAVEITRPGGPEVLVPTERSVPEPASGEVLIKVSAAGVNRPDVL FT QRKGNYAPPPGASDLPGLEVAGEIVGGDAAAGGFAIGDKVCALVAGGGYAEYVVAPAPQ FT CLPIPRGLTEIEAAGLPETYFTVWSNVFDRGRLAAGEALLVHGGASGIGTTAIQLARAM FT GNKVYATVGSDERARAVEALGAALGINYKTQDYVKEVLDATGGAGVDVVLDMVAGEYIG FT RNLKCLADDGRIVIIALLGGAHANVDCNQVLRRRLTITGSTLRPRPVEFKGEIARALRE FT RVWPLLENGTLKPVVHATLPLEQAAAAHAMMEAGENIGKIILTV" FT misc_feature 823236..824171 FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenases" FT CDS 824318..825064 FT /transl_table=11 FT /gene="tpiA" FT /gene_synonym="tpi" FT /locus_tag="BP0801" FT /product="triosephosphate isomerase" FT /EC_number="5.3.1.1" FT /note="Similar to Escherichia coli triosephosphate FT isomerase TpiA or Tpi or B3919 or Z5464 or Ecs4844 FT SW:TPIS_ECOLI (P04790) (255 aa) fasta scores: E(): 4.1e-37, FT 48.178% id in 247 aa, and to Pseudomonas aeruginosa FT triosephosphate isomerase TpiA or Pa4748 SW:TPIS_PSEAE FT (Q9HV51) (251 aa) fasta scores: E(): 3.4e-41, 53.846% id in FT 247 aa" FT /protein_id="CAE41106.1" FT /translation="MTTAENRARLVLGNWKMHGNLAENAALLAELRAADAAAHCEMGVC FT VPFPYLAQTAAALQGSAIGWGAQDVSAHAKGAYTGEVAAPMLAEFGCRWVLVGHSERRT FT LHAESDQLVADKARAALEAGLTPVVCVGESLQEREGGNTLGVIERQLEPVLALGRDALV FT RMVLAYEPVWAIGTGRTASPEQAQEVHSAIRVALDGLQASQVRVLYGGSVKGANAASLF FT AMPDIDGGLVGGASLVAEEFLRIAAA" FT misc_feature 824336..825061 FT /note="HMMPfam hit to PF00121, Triosephosphate isomerase" FT misc_feature 824819..824851 FT /note="ScanRegExp hit to PS00171, Triosephosphate isomerase FT active site. Confirmed by InterPro eMOTIF pattern match." FT CDS 825086..825532 FT /transl_table=11 FT /gene="secG" FT /locus_tag="BP0802" FT /product="protein-export membrane protein" FT /note="Similar to Escherichia coli protein-export membrane FT protein SecG or B3175 or Z4537 or Ecs4054 SW:SECG_ECOLI FT (P33582) (110 aa) fasta scores: E(): 3.4e-06, 35.965% id in FT 114 aa, and to Xylella fastidiosa protein-export membrane FT protein Xf0304 TR:Q9PGJ6 (EMBL:AE003883) (132 aa) fasta FT scores: E(): 1.3e-08, 39.098% id in 133 aa" FT /protein_id="CAE41107.1" FT /translation="MSLMLTVLLVVQVVSALAIIVLVLLQQGKGADMGSAFGSGSAGSL FT FGATGAANFLSRTTKWAAVVFFVSTAGLAYVTHKGPSGPAIDSGVMQNFPQDRSVPQAP FT GSAPAGSGSSVPQAPGSGVPAAPAQPDASVPQAPWRFCPWAFTC" FT misc_feature 825086..825226 FT /note="Signal peptide predicted for BP0802 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.887) with cleavage site FT probability 0.417 between residues 47 and 48" FT misc_feature join(825104..825157,825185..825253) FT /note="2 probable transmembrane helices predicted for FT BP0802 by TMHMM2.0 at aa 7-24 and 34-56" FT tRNA 825583..825667 FT /note="tRNA Leu anticodon GAG, Cove score 63.68" FT CDS 826320..828551 FT /transl_table=11 FT /gene="betT" FT /locus_tag="BP0804" FT /product="high-affinity choline transport protein" FT /note="Similar to Escherichia coli high-affinity choline FT transport protein BetT or B0314 or Z0401 or Ecs0360 FT SW:BETT_ECOLI (P17447) (677 aa) fasta scores: E(): FT 2.5e-111, 44.296% id in 675 aa, and to Erwinia amylovora FT high-affinity choline transport protein BetT TR:Q9F806 FT (EMBL:AF264948) (676 aa) fasta scores: E(): 1.5e-109, FT 43.004% id in 679 aa. Also similar to BP0831, 37.348% FT identity (38.522% ungapped) in 656 aa overlap." FT /protein_id="CAE41108.1" FT /translation="MSITPPDDEGAEPGPSSQAPHAQAAALRRPIERSRFGGSQRRPER FT QDGDDAPVSRSDLSKGPEEVLERRTASINWRVLLVSSAVIVAFSVWAILVPGDARMRMK FT TAVDWIAANLGWYYVLTMTLVIGFVLWVAFSKEGDVRLGPDHSRPQYRLSTWVAMLFAA FT GVGIDMLFFSVTGPVVQYLHSPSGEGGTAAAMQDAVVWTMFHYGVAGWSMYALLGMAMG FT YFAYRWGMPLSIRAALYPLLGKRVRGPLGDGISIIALVGTVFGVATSMGIGVVLLNVGF FT SLIFGLEQGLSLQIALVVGAVILTIGATTSGVDRGIRWISELNLWSAVAMMVYILLTGQ FT TAFLLNALSENIGRFLVTFPARTLQTFAYEPGGPEWMGGWTLFFWAFWLAWGPFVGVFL FT ARISRGWTLREFVIAAITAPVLCDFIIVSLFGNSALYHVLQGDTAFAALAVESSERGWY FT ALLAMFPGAMFLIGLATLSGLLFYLTSANSGAMVMSNFSASIPDPSHDGPKWLRIFWAV FT LTAVLTVAMLLAGGVTTMEYATLIFALPVTIIAYTVMASFYKVLRMERAEREGQVLRRP FT SMAPMGGHLPERSWKQRLEQLHAFASLRQATQFLDHTVRPALGDVAAEFRNQGYEVASE FT SLASERGIEEPLLRVSMDGFRAFQYHVAVVEAPVPMFSGRMSRETDVYYRLEVFTQTGS FT GGYDLMGLTRQQVIDDVLERFEAHLAFLTFSTNTDTASVLTPPAPARNP" FT misc_feature join(826536..826604,826647..826715,826776..826844, FT 826929..826997,827079..827147,827190..827258, FT 827292..827360,827445..827513,827550..827618, FT 827700..827768,827856..827924,827934..828002) FT /note="12 probable transmembrane helices predicted for FT BP0804 by TMHMM2.0 at aa 73-95, 110-132, 153-175, 204-226, FT 254-276, 291-313, 325-347, 376-398, 411-433, 461-483, FT 513-535 and 539-561" FT misc_feature 826548..828011 FT /note="HMMPfam hit to PF02028, BCCT family transporter" FT CDS complement(828574..829374) FT /transl_table=11 FT /locus_tag="BP0805" FT /product="probable transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa3174 TR:Q9HZ60 (EMBL:AE004741) FT (242 aa) fasta scores: E(): 1.4e-13, 31.048% id in 248 aa, FT and to Rhizobium meliloti putative transcription regulator FT protein Smc00263 TR:CAC46270 (EMBL:AL591788) (282 aa) fasta FT scores: E(): 1.4e-14, 30.000% id in 250 aa" FT /protein_id="CAE41109.1" FT /translation="MENERGTVERIVRLIAFLASQDDDVGVKDIADELQLPHSTAHRLL FT QQLVALNLMQRVQGARRYAFGPEMYRLGAMISNKVNVVQLASAPLHRIVAYTNESCALA FT LYRDQDATLVFAKQVESANQLRYQLDLYRPVSVLWGASGHAVLAHLPPERVRTLLKKEP FT LSPTGLAALPARELNRDLKQIREQGYSVSTRGEKIEGAAGISTPIFGTGGHVIGCFSLF FT IPRIRYPEHRETELAQLLVREAGALSDVLAGRQAAPAGAPGAAR" FT misc_feature complement(828625..829188) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT misc_feature complement(829237..829302) FT /note="Predicted helix-turn-helix motif with score 1203 FT (+3.28 SD) at aa 70-91, sequence VGVKDIADELQLPHSTAHRLLQ" FT CDS 829656..830888 FT /transl_table=11 FT /locus_tag="BP0806" FT /product="methylaspartate ammonia-lyase" FT /EC_number="4.3.1.2" FT /note="Similar to Clostridium tetanomorphum methylaspartate FT ammonia-lyase SW:MAAL_CLOTT (Q05514) (413 aa) fasta scores: FT E(): 4.5e-51, 36.520% id in 408 aa, and to Citrobacter FT amalonaticus 3-methylaspartate ammonia-lyase TR:O66145 FT (EMBL:AB005294) (413 aa) fasta scores: E(): 1e-53, 38.107% FT id in 412 aa. Also similar to BP3177, 40.500% identity FT (40.704% ungapped) in 400 aa overlap." FT /protein_id="CAE41110.1" FT /translation="MRVQRLLATDGIGGYYWRDQEAIGQGAPRDGFLYRGAPVTPGFTS FT IIQVSSTVLLTGVADDGSELYGDCATVNHAFRSGRQQAPDAASLIAQAEGPLSRWLAQC FT DLSSFRDAAAQLDTMRLDGQPLHMALRYGLSQLLLQAVAAHHRVTMAEILAREYGLTLA FT DTPCDLLGSCGGNWYENVDKAIVRELPYFPQTAMVRTDQLDELPAYAEWISQRIRAVGR FT PDFFPTLHYDLHGLLSQRVGDDLDAALVYLRKVEAASAPYPVLFEDPLDAGERGAQIAL FT MGRLREALRRAGSGIRLIADEWCNTREDVREFVAQGCCDLIQIKMPDLGGVDNTVQACL FT ICRDGGVGVYLGGSCNETDISARVAAHVALAVRPVEFLGKPGLGLDEGVMIVTNEMQRA FT IRSYRTRLSAA" FT CDS 830999..831988 FT /transl_table=11 FT /locus_tag="BP0807" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1.3e-34, 35.737% id in 319 aa, and to Agrobacterium FT tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) FT fasta scores: E(): 3.9e-38, 39.048% id in 315 aa" FT /protein_id="CAE41111.1" FT /translation="MTRWQQWIIAALGCGAACLGIATSALAAPAGYPKGPVTLVVPTGP FT GGGTDLAARAFSERLSAILGQPVVVDNRAGAGGIIGTQDVAKSRPDGHTLLISSNQFGI FT LPAVQDNLPFDPVKDFIPVTSIGLIPTLVLVNPSLPVRSVAELIDYARKQPGGVQYASA FT GIGSPNHLFAAMFGSMADVPMMHVPFRGTSPALVAVAGGQTAVAFASQPASQSFVAAGK FT LRAIAVTSARRLPSLPDLPPVSDTVPGYDADIWLGVWAVAGTPDTVVDAIHAAFEEALK FT DPRVIDSLGKMGIVVATRSRQDFTAMVEREIGKWARVVAEAGDGFQKQ" FT misc_feature 830999..831079 FT /note="Signal peptide predicted for BP0807 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 27 and 28" FT misc_feature 831008..831040 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 831017..831085 FT /note="1 probable transmembrane helix predicted for BP0807 FT by TMHMM2.0 at aa 7-29" FT CDS 832019..833407 FT /transl_table=11 FT /locus_tag="BP0808" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0881 TR:Q9I564 (EMBL:AE004522) (450 aa) fasta FT scores: E(): 8e-29, 33.842% id in 393 aa, and to FT Agrobacterium tumefaciens Agr_l_2924p TR:AAK90029 FT (EMBL:AE008346) (448 aa) fasta scores: E(): 4.2e-31, FT 35.280% id in 428 aa" FT /protein_id="CAE41112.1" FT /translation="MQLASPSPAVGVTRPLADAIVATASSRLGAATLQTAQACLLDSLA FT VTLAGAQEPLVAVLDRTLAGFGGAGQATLIGRGRRAPLPDAALVNGAAGHAFDFDDMHI FT ESAMHPSVPVVAAALAVAEHEGADGAALLRALALGIEAQLRIGEAVRPHHYQRGWHATG FT TLGHFGAAVAAGCLLGLDAQQTTMALGIAGTQASGPKETFGTMSKPLHAGQAARNGVMA FT ALLARQGYTSTEDILDGHYGFGRVCGDGAHWDGLLDGWGERWSMHDILYKPHASSFCTQ FT ALIECALALRATPGFAWTAVARIHGEVSAMSMANARIVEPRDGMQAKFSLSHAIAQGLV FT HGQATIADFSDARAREPALRALRARTTIAQGAGLAWPEAIVTVTLADGSQLRRHADLRA FT STATSQDKWRVTLGKFMSVAGAVPGFASCDAVRDAVLRLPEAPGAVAALMALLRPQAAT FT PSGA" FT CDS join(833455..833724,833724..834947) FT /pseudo FT /transl_table=11 FT /gene="argH" FT /locus_tag="BP0809" FT /product="putative argininosuccinate lyase (Pseudogene)" FT /EC_number="4.3.2.1" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 90. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT argininosuccinate lyase ArgH or B3960 SW:ARLY_ECOLI FT (P11447) (457 aa) fasta scores: E(): 1.4e-30, 31.127% id in FT 408 aa, and to Rhizobium meliloti probable FT argininosuccinate lyase AsaL protein TR:CAC47226 FT (EMBL:AL591791) (467 aa) fasta scores: E(): 3.3e-38, FT 33.183% id in 443 aa" FT /db_xref="PSEUDO:CAE41113.1" FT misc_feature join(833551..833724,833724..834395) FT /note="HMMPfam hit to PF00206, Lyase" FT misc_feature 833626..833655 FT /note="ScanRegExp hit to PS00215, Mitochondrial energy FT transfer proteins signature." FT variation 833725 FT /note="(C)1 in pertussis; (C)2 in parapertussis" FT CDS 835006..835989 FT /transl_table=11 FT /locus_tag="BP0810" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus 2,4-diphenoxyacetic FT acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta FT scores: E(): 9e-44, 42.415% id in 323 aa, and to FT Burkholderia cepacia hypothetical 35.5 kDa protein FT TR:AAK81675 (EMBL:AF029344) (337 aa) fasta scores: E(): FT 9e-44, 42.415% id in 323 aa" FT /protein_id="CAE41114.1" FT /translation="MADLFSVLRIAYTLALGAALAAPAAVAAPFPDRPVRLVVPYPPGG FT GADIFARTLSEPLAAQLGQPVIVENRPGANGIIGTDAVARAAPDGYTILLGNSGPNAIN FT QAIYPDLPYDAVDSFEEVSLIGYTTHVLVVHPGVQARSVTELIALARRSPGQLNFASTG FT QGGTPHLAGELFKLMTGTDMVHVPYKGASPSNADVIAGQVQLTFNTLPPLMTSIRAGKV FT RALAVTGKQRSQLLPEVPTIDEAGVAGYDVQTWYGIHAPAGTPAAVVDRLNQALVAVLS FT NAQVRAALVGQGYEVATSTPGEFSRMVRDDVAKWRKVVKEAKVKVD" FT misc_feature 835006..835086 FT /note="Signal peptide predicted for BP0810 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 27 and 28" FT misc_feature 835018..835086 FT /note="1 probable transmembrane helix predicted for BP0810 FT by TMHMM2.0 at aa 5-27" FT repeat_region 836001..837231 FT /note="Insertion sequence" FT CDS 836186..837202 FT /transl_table=11 FT /locus_tag="BP0812" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein chnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /protein_id="CAE41115.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature 836438..836725 FT /note="HMMPfam hit to PF01548, Transposase" FT misc_feature 836738..837070 FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT CDS complement(837399..838223) FT /transl_table=11 FT /locus_tag="BP0813" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Rhizobium loti probable short-chain FT dehydrogenase/reductase Mlr0808 TR:Q98LZ5 (EMBL:AP002995) FT (259 aa) fasta scores: E(): 1.2e-30, 45.985% id in 274 aa, FT and to Rhizobium meliloti putative oxidoreductase protein FT Smc01157 TR:CAC41799 (EMBL:AL591783) (259 aa) fasta scores: FT E(): 2.3e-21, 41.791% id in 268 aa" FT /protein_id="CAE41116.1" FT /translation="MDLGIAGRWALVCGASKGLGYGCASALLQNGVNVVINARNDGVLQ FT DAASALRKDAENQARQSGGQAGKVIAVACDITTEPGRQAALEAPGGPGPDFDIVVTNAG FT GPPPGQYQDWDRDDWIKAIDANMLTPIALIKATVDGMQARGFGRIVNITSTAVKAPIST FT LGLSNGARSGLTGFIAGLARSEIAARGVTINNILPGRFDTDRLKSTMRVAAQACGQSIE FT ALREEQQLGIPAGRFGRPDEFGALCAFLCSVHAGYITGQNMLIDGGAYPGTY" FT misc_feature complement(837429..837521) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(837612..838202) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT CDS complement(838301..839191) FT /transl_table=11 FT /locus_tag="BP0814" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli probable transcriptional FT regulator LrhA or GenR or B2289 SW:LRHA_ECOLI (P36771) (312 FT aa) fasta scores: E(): 3.9e-37, 36.396% id in 283 aa, and FT to Erwinia chrysanthemi pectinase gene transcriptional FT regulator PecT SW:PECT_ERWCH (P52662) (316 aa) fasta FT scores: E(): 3.5e-36, 36.704% id in 267 aa" FT /protein_id="CAE41117.1" FT /translation="MRHLDMQQLRTLVTIAQTGSFSATAEKLFKTQPAITHQMHQLEAT FT LGTALFEKQGRSRVLTEDGQKMLKYASQVLALNDEVFRVFQERLQGTLRIGSPHDAVET FT LLPSILRQASQALPQLNIDVCIDSAPRLFELLQRGEIDMAISARFHQEFEGLILKRSPV FT VWLCAADYVHRPDKALPLILADGSSIYREMALAALEQHHIRWTVTRIVPDLVGIKAAIR FT AGLGVTPRSIDLLAPDMRMLDEADGLPPLPEMTYHLWIRPHADDSPARQAYEMLRQAWE FT LVDAVPAARAGPAAG" FT misc_feature complement(838757..839176) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(839072..839137) FT /note="Predicted helix-turn-helix motif with score 1103 FT (+2.94 SD) at aa 19-40, sequence GSFSATAEKLFKTQPAITHQMH" FT CDS 839395..840546 FT /transl_table=11 FT /gene="metC" FT /locus_tag="BP0815" FT /product="cystathionine beta-lyase" FT /EC_number="4.4.1.8" FT /note="Similar to Escherichia coli cystathionine beta-lyase FT MetC or B3008 SW:METC_ECOLI (P06721) (395 aa) fasta scores: FT E(): 1.1e-56, 41.795% id in 390 aa, and to Rhizobium FT meliloti probable cystathionine beta-lyase protein FT TR:CAC46058 (EMBL:AL591787) (395 aa) fasta scores: E(): FT 2.6e-63, 46.073% id in 382 aa. Also similar to BP0112, FT 42.784% identity in 388 aa overlap." FT /protein_id="CAE41118.1" FT /translation="MKFDTLLTHGGRDPKAHKGMVNTPVYRTSTVVFESMAEYKATRGA FT KFDHVRYGRLGTHTVKELENLVAAIEGGHRAVLTPSGVSAIATTLNTLARPGSHILVPD FT NVYYPCREFCEKVLAPRGVRVEYYAGSEVERLVRPDTSVVYCESPGSLTMEMQDFARIA FT AAAHAVGAKVVADNTWATPVFLQPFEHGIDVSIHAATKYLVGHSDVMMGTVTAHDPELW FT LAIRTEAAAQGLSISPDDAYLATRGIRTLGVRMAAHYRNALDVAQWLAGHPRVAQVLYP FT ALPQHPDHALWRRQMRGASGLLTLELEPCSLEQRDAFIDRLTLFAIGASWGGYESLVLP FT ADTAGKRSLAGRDYAGPLVRLHIGLEDVEDLKRDLDQALRRED" FT misc_feature 839404..840534 FT /note="HMMPfam hit to PF01053, Cys/Met metabolism FT PLP-dependent enzyme" FT misc_feature 839971..840015 FT /note="ScanRegExp hit to PS00868, Cys/Met metabolism FT enzymes pyridoxal-phosphate attachment site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 840550..841581 FT /transl_table=11 FT /locus_tag="BP0816" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr7142 protein TR:Q987A0 FT (EMBL:AP003011) (349 aa) fasta scores: E(): 2.1e-12, FT 26.901% id in 342 aa, and to Rhizobium meliloti FT hypothetical protein Smb20435 TR:CAC48821 (EMBL:AL603643) FT (331 aa) fasta scores: E(): 2.3e-12, 26.586% id in 331 aa" FT /protein_id="CAE41119.1" FT /translation="MSKIQDLLSGMQPGTVAHDYLPVGTMSSGMAIAIPVTVIKGAAPG FT PCLWVNGQVHGNELNGVIAAVELGRRVDPAALSGSLVITPTANPLGLDNRTKTAPQDLQ FT DLDQTFPGNPQGMVTNHMAHALFQEVRAVASCLVNMHTMGSIHDSKPYCVYKVFPGSAV FT TEAQLLRMTSFFEPSVSCRMDVGGAGELPGNIAGGLDYQCLAIDVPAFMVELGQGSWYT FT PENVEQALTGLLRLASHLGLIDESGVSAGAPAPASVRRVTRRRWVMARHGGLFLAAGRA FT GQIVPAGAPLGRIVDLHGAEVEAVSLDTDCIVIGMRRDPVVHTGDRVAFVATQWDQADI FT GAG" FT CDS 841710..842681 FT /transl_table=11 FT /locus_tag="BP0817" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 5.6e-32, 35.474% id in 327 aa, and to FT Agrobacterium tumefaciens Agr_l_312p TR::AAK88723 FT (EMBL:AE008213) (329 aa) fasta scores: E(): 6e-30, 33.739% FT id in 329 aa" FT /protein_id="CAE41120.1" FT /translation="MQHTLAKYLAAAVAVLPWTAGAQDKAAKPWQPDGPVTLILGYGAG FT GGHYALAQVLQARMAEELGQPLIVMPKPGAGGLIATDFVANARPDGRTITWSGPGVLTI FT WPQLRQISYDPKKLTPVNLLVQMGYMLVTKPGESRWNSVQDVIDGSKSGDVTYSSVGVG FT TSNSMTGHLLNAMTGSRLREIGYKGGGPALMSTMAGETDIGFGDTATHKLIAAGRLRAI FT ATTTRQREPRFPDVPTVAETVPGYEVTNWLGVIAPPGTPQPIVDRYQQIFAKLMAEPEI FT AKRVKELGMTPDVGTPQAFSELIDSETQLWKRLIRDQNIKVE" FT misc_feature 841710..841775 FT /note="Signal peptide predicted for BP0817 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.972) with cleavage site FT probability 0.938 between residues 22 and 23" FT CDS 842706..844790 FT /transl_table=11 FT /locus_tag="BP0818" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa probable FT thiosulfate sulfurtransferase Pa2603 TR:Q9I0N4 FT (EMBL:AE004689) (527 aa) fasta scores: E(): 1.4e-45, FT 40.310% id in 516 aa, and to Agrobacterium tumefaciens FT Agr_pti_bx104p TR:AAK91049 (EMBL:AE007935) (395 aa) fasta FT scores: E(): 9.6e-31, 41.987% id in 312 aa" FT /protein_id="CAE41121.1" FT /translation="MTTMQQRYDAVKDAMAQIGRLAAQLDGEALREAIGPVLVALGERD FT ELFPRDEFPIRAGKPGGLYQLWRGESGDLALYASAGKTGKKQPPHDHTTWAVIAGVYGE FT EHNVFFERTDDGSRAGFGTLRQIDALTVVQGNAARLSGEVFHTIEVVSEEDSLHLHLYG FT RALDTLSGRINFATEEGGAYTRFMAVPETYAPWIAPRDLYEMLTDGGELAILDVRENGV FT YTQGHLFHAASMPLSVFELRVDDGLPSPHVRIVVIDDADGLAEQAVRLLHQRGYHNVAV FT LQGGQPGWNAAGLPVYTGVFVPSKAFGEVAEHVYGTPSISAVELDALRRSEEVLVLDSR FT TEQEFNLMSVPGAYSCPGAELVARALDHAGPIVVNCAGRTRSIIGAQSLRNAGKTDVRA FT LENGTMGQHLAGLPLERGKSASYLDRPVAAGAAQAAQAWALGMSIATLDAGELHDMLSN FT PYRTTYLFDARDPSCSSRATLPRAVAAPGGQLVQQTDYYAPVRNARIVVFDTDGVQAPM FT TAGWLHQMGWEVYLHRPEATALVAPPRVEYDDERGVPVEAVAADAVIIDVGDSRTYRAG FT HLAGAAWAPRSRLPALLAQRKPAGPLLFTCADGRVSRLAAADAAAQGYQAAYLKGGTAA FT LGADRLRGDAPQFLTEAIDVWYRPYDRETGIEEAMHQYLSWETGLLDKVRSDPTVAFRI FT " FT misc_feature 843297..843581 FT /note="HMMPfam hit to PF00581, Rhodanese-like domain" FT CDS complement(844857..845849) FT /transl_table=11 FT /locus_tag="BP0819" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 4.4e-35, 37.037% id in 324 aa, and to FT Pseudomonas putida hypothetical 34.5 kDa protein in FT clcB-clcD intergenic region precursor SW:YCLC_PSEPU FT (Q47100) (329 aa) fasta scores: E(): 3.7e-32, 34.375% id in FT 320 aa" FT /protein_id="CAE41122.1" FT /translation="MNNQRRNALRVLTGLCGAAALPRLALAQAGAYPAGPVTVVVPYGS FT GGSTDVIARLLVNDVSERLGGKFIVENKPGAAGNIGTRQVGISRPDGTTLLYSTATPFC FT INPYVYRTLPFDPDKDFAAVSRTAKLPLVLVVNAGLGIKTPQAFIDYLRKNQQQCSYSS FT YGIGTSSHIASAIFTKKIGAPGVLHVPYKDMTAMSDLAAGRNTFHIDAWSVVDPLVRAG FT KLTALAVSSAEPLPWAPKLPTIASVIGSDYEVVTWHAVFAPRKTPAEIVQKLNHEFRQT FT IAKPSVQKTYVDQGFLTYPPATPAEIDAFVQQDKQRWKSFVEAAGITPS" FT misc_feature complement(845769..845849) FT /note="Signal peptide predicted for BP0819 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.879 between residues 27 and 28" FT CDS complement(845958..847292) FT /transl_table=11 FT /locus_tag="BP0820" FT /product="conserved hypothetical protein" FT /note="Similar to Agrobacterium tumefaciens Agr_l_1811p FT TR:AAK89479 (EMBL:AE008289) (440 aa) fasta scores: E(): FT 1.4e-42, 32.143% id in 448 aa, and to Rhizobium meliloti FT putative oxidoreductase Sma1850 TR:AAK65676 (EMBL:AE007288) FT (425 aa) fasta scores: E(): 2.5e-39, 33.724% id in 427 aa" FT /protein_id="CAE41123.1" FT /translation="MAASRDIFAPDFRRRPYWWEGYEPPECGEDTLPASADVAIVGGGY FT TGVCCALALREAGIEAVVLEAGRPGEGASTRSGGQVSGGVNVQKKALAAVGESAGQRAE FT RLAARLRDAAASMAYVESLIERYAIECGWRRTGRLTTMWVPAHYQSWQARLDQLNACTG FT SQARMIPREELAAEIGSSVYHGAALIEHAGHLQPAQLYGGMLRAARDAGARVLGRTPVE FT RIERRAGGYDVHTARGTVRAGQVVIATIGYTGANLGGLKRRIVPVCTHMIATEALPPDL FT AASLLPTNRAVSESRRVVNHYRLSPDGRRLLFGGRARFVPTDEATTARLLYRAMLKRFP FT QLAGTRITHSWGGNVAMTLDSMPHIGGADGLHYALGCNGSGVAMMSYLGHCVGRKIATQ FT SGEPINAFDMGEIPGHPFYFGNPWFLFAIGSWYQARDAYDHWRAR" FT CDS complement(847318..849330) FT /transl_table=11 FT /gene="hyuB" FT /locus_tag="BP0821" FT /product="hydantoin utilization protein B" FT /note="Similar to Pseudomonas sp hydantoin utilization FT protein B HyuB SW:HYUB_PSESN (Q01263) (592 aa) fasta FT scores: E(): 4.3e-44, 29.223% id in 592 aa, and to FT Rhizobium loti hydantoin utilization protein B Mlr7025 FT TR:Q987J6 (EMBL:AP003010) (661 aa) fasta scores: E(): FT 5.8e-133, 52.108% id in 664 aa" FT /protein_id="CAE41124.1" FT /translation="MTVDNFRLQVLANHCTAAAEAMGYTLMRTAYSTFVKETEDFSAQL FT MTPAGKTFASPKTFGATWYTGLDYGRVIAMFDDYREGDIYLTNDPYSGFVATHTPDMHV FT WKPVFRDGRLVCFVGSHIHNTDMGGAVPASLSRTLTEVHQEGLRIPPMLLARDGVIDEK FT VLRIMEVNVRMPEQNRGDLNAQIAALNVGERKVHEIIDRFGVDEFMQGAEAILDYAEQQ FT TRALIREIPDGEYRFAEYADEDTVGGYPCRIQITLRVRGDELELDFTGSDPQVASSLNV FT PTGGDGHHSVITVGLIYVMHTLAPRNVLNAGSVRPCRAVLPEGTVVNPQAPAAVGMRSL FT MAAVIQACTFGVFSRAMPDRLPACPAGGSTLLNVKTATREGRQVLSSIGPCGGGAGGGP FT EHDGVEGCGANNAFLKNTPVEINEAEVPIEIIRYGLVPDTGGAGRQRGGNAATMEFRLL FT APNGVVTARNRNRSELAAWGVMGGKAGANSRFIRNPDSDAPEELRNSDLVNCAPGDVIR FT LQGPAGGGYGHPYERPIEQVVEDVRCGFVSRQRAREAYGVAVRADLSVDEAATRELRRA FT DRGGQAHFDHGPGRSRFEAVWTPARYDAMTRIMAALPISWRHFVKHQMFAALAGSAPPQ FT DGGAQDIERLYAQLSQRYADLPSPQAIAAASGAAA" FT misc_feature complement(847711..849324) FT /note="HMMPfam hit to PF02538, Hydantoinase B/oxoprolinase" FT misc_feature complement(848809..848832) FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT CDS complement(849327..851399) FT /transl_table=11 FT /gene="hyuA" FT /locus_tag="BP0822" FT /product="hydantoin utilization protein A" FT /note="Similar to Pseudomonas sp hydantoin utilization FT protein A hyuA SW:HYUA_PSESN (Q01262) (690 aa) fasta FT scores: E(): 1.3e-75, 34.776% id in 693 aa, and to FT Rhizobium loti hydantoin utilization protein A Mlr7024 FT TR:Q987J7 (EMBL:AP003010) (692 aa) fasta scores: E(): FT 8.9e-130, 53.254% id in 676 aa" FT /protein_id="CAE41125.1" FT /translation="MRDIDGGTMGYRVGVDIGGSFTDFAVFDEDNGEIKSLKVFSRPDQ FT PGEEVIAGVRMLGERYGIQPEQITYFTHGTTVGINTVIQRKGLKLALFTTENFSDVLEL FT ARLKTPDMYHLLSRRPAPLVKRSMVFGIAERMGPDGTVRAPLDEASVERAVRQALDAGA FT EGIVVSLLHAYRNPAHELRVREIAEALAPGLPVSCSSETWPIIREYERTITAVIGGYVQ FT PRVAHYLTSLQQALKNAGVQPEPRLTKSNGGVMTAEQGKRDCVQMILSGTAAGVIGASH FT VAATAGLPRCLSLDIGGTSADIAVIVDGKPQYGVGELIGDFQIYIPSVSVSSVGEGGGS FT IAWVDPLGVLKVGPESAGSHPGPACYRRGGTRATITDAFVCCGLVGHSELGYQAVTVDA FT DASRQAVGELADRLGRGIEETAEAIIQIAVSGMYSEVSGLVSRYGIDPREYAVLAFGGA FT GPMLGCFLARELKVREIVVPPSPGTLSALGGLIADLKSDFLKTVYTDLSADRLAFVCDE FT FATLAGRARQWLAQEQGHAEEAELVYSAEMRYRGQSYEIDTVLDPIHIEAGDVQAVGQA FT FHDMHRRLYGHADEQAPVQIVSLRVVIAGNNDKPAFPRHALRPGAPRAERKVRVWLDGA FT WHEVPLYARTALAAGQQFTGPAIVTQDDCTTVIPPDYACRVDEYANLRITEGAAS" FT misc_feature complement(849720..851366) FT /note="HMMPfam hit to PF01968, Hydantoinase/oxoprolinase" FT CDS 851479..852126 FT /transl_table=11 FT /locus_tag="BP0823" FT /product="putative transcriptional regulator" FT /note="Similar to Pseudomonas putida pca regulon regulatory FT protein PcaR SW:PCAR_PSEPU (Q52154) (291 aa) fasta scores: FT E(): 6e-07, 31.655% id in 139 aa, and to Rhodococcus opacus FT PcaR TR:O67983 (EMBL:AF003947) (265 aa) fasta scores: E(): FT 3.5e-08, 28.108% id in 185 aa" FT /protein_id="CAE41126.1" FT /translation="MNDNRSVQRCLALLRSFRSGPGQSLTALSKAVDLPHSTVLRFLTT FT LESEGYVRKEGTLWSLTPQLLEIGFAALANTGVNDVIQSALQELADQCAGTANIGERSK FT NDVIIIARASSEAERRKILVVNLRVGNALPPASALCSALDLPEDQWAIARYPERKVTTV FT GVALFSSQARGLSLGLSVNDDDYDMPRIEAEVLPRLRAQRDHIRRLMSLGEM" FT misc_feature 851545..851610 FT /note="Predicted helix-turn-helix motif with score 1102 FT (+2.94 SD) at aa 23-44, sequence QSLTALSKAVDLPHSTVLRFLT" FT CDS 852309..852761 FT /transl_table=11 FT /locus_tag="BP0824" FT /product="azurin" FT /note="Identical to the previously sequenced Bordetella FT bronchiseptica azurin SW:AZUR_BORBR (P00278) (129 aa) fasta FT scores: E(): 4.2e-49, 100.000% id in 129 aa,and similar to FT Alcaligenes xylosoxydans xylosoxydans azurin-I precursor FT Az1 TR:O87169 (EMBL:AB013077) (150 aa) fasta scores: E(): FT 4e-42, 74.667% id in 150 aa" FT /protein_id="CAE41127.1" FT /translation="MFKQVLGGMALMAAFSAPVLAAECSVDIAGTDQMQFDKKAIEVSK FT SCKQFTVNLKHTGKLPRNVMGHNWVLTKTADMQAVEKDGIAAGLDNQYLKAGDTRVLAH FT TKVLGGGESDSVTFDVAKLAAGDDYTFFCSFPGHGALMKGTLKLVD" FT misc_feature 852309..852371 FT /note="Signal peptide predicted for BP0824 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 21 and 22" FT misc_feature 852372..852755 FT /note="HMMPfam hit to PF00127, Copper binding proteins, FT plastocyanin/azurin family" FT misc_feature 852684..852734 FT /note="ScanRegExp hit to PS00196, Type-1 copper (blue) FT proteins signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(852805..853476) FT /transl_table=11 FT /locus_tag="BP0825" FT /product="conserved hypothetical protein" FT /note="Similar to Vibrio cholerae hypothetical protein FT Vc2666 TR:Q9KNR5 (EMBL:AE004332) (205 aa) fasta scores: FT E(): 2.1e-30, 43.781% id in 201 aa, and to Bacillus FT halodurans Bh3429 protein Bh3429 TR:Q9K7D5 (EMBL:AP001518) FT (215 aa) fasta scores: E(): 3.8e-14, 31.818% id in 198 aa" FT /protein_id="CAE41128.1" FT /translation="MSDQSASVSTHWVPHQPAERILMTLKTRGPQGIAAIAEVLDVTAE FT AVRQQMARLQVEGLVDAETRSAGRGRPTQIWRLTQAGHARFPDMHAEMTVQMLGAVRQV FT FGESGIDKLIGAREASMRASYAEAMQGADGLRERLERLVAVRSREGYMAELVATDDGYL FT LVENHCPICAAAQACMAFCRSELDLFREIIGPQARVERAEHILAGARRCAYTVRPLRQA FT A" FT misc_feature complement(853321..853386) FT /note="Predicted helix-turn-helix motif with score 1118 FT (+2.99 SD) at aa 31-52, sequence QGIAAIAEVLDVTAEAVRQQMA" FT CDS complement(853491..854984) FT /transl_table=11 FT /locus_tag="BP0826" FT /product="outer membrane component of multidrug efflux FT system" FT /note="Similar to Pseudomonas aeruginosa mexE, mexF & oprN FT genes OprN TR:P95423 (EMBL:X99514) (472 aa) fasta scores: FT E(): 5e-47, 39.703% id in 471 aa, and to Xanthomonas FT maltophilia (Pseudomonas maltophilia) (Stenotrophomonas FT SmeC TR:Q9RBY7 (EMBL:AF173226) (471 aa) fasta scores: E(): FT 1.1e-31, 33.612% id in 479 aa" FT /protein_id="CAE41129.1" FT /translation="MTHPVPTTFARTAGALLAALALAGCAVGPQYQAPTPAPVKLASPE FT QALFSADRLQREWWRQLQDARLDALIGLALARNLDIGLALARNLDIRQAQARLREARAA FT LDEKELDRWPTVTAAGGYTRSLSQINPGPDQRNLAQSYRAGFDATWEIDLFGRLQRRAE FT AAAARDQAAAADLAQTRLVVVAELARNYFEMRGAEQRLAVARANLATQQETLRVTAALV FT ETGRGYAGDLASARAELAGTRALLAPLETQRRLAQYHIAVLAAMRPAELGELRQEQPLA FT PLAAQLPIGDVAMLLQRRPDVRAAERLLAATNADVGAITAELYPRIDLGGFLGFIALRG FT GDLGQASSKAFALAPTISWPALHLGSVQAQLRAGQARHDAARARYEQVALQAIEEVEGA FT LTRYGQNQQRLRDLLDSATQSQRAADLAQTRYREGAAPYLTVLDAQRTLLRAQDAVAQS FT ESESYTSLVALYKALGGGWNTDAAAPARSARTAALPASP" FT misc_feature complement(853530..854123) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT misc_feature complement(854157..854756) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT misc_feature complement(854889..854984) FT /note="Signal peptide predicted for BP0826 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.755 between residues 32 and 33" FT CDS complement(854981..858094) FT /transl_table=11 FT /locus_tag="BP0827" FT /product="integral membrane component of multidrug efflux FT system" FT /note="Similar to Pseudomonas aeruginosa probable Rnd FT efflux transporter Pa4207 TR:Q9HWH4 (EMBL:AE004837) (1029 FT aa) fasta scores: E(): 0, 69.697% id in 1023 aa, and to FT Vibrio cholerae multidrug resistance protein, putative FT Vc0164 TR:Q9KVI2 (EMBL:AE004106) (1036 aa) fasta scores: FT E(): 3.4e-183, 48.309% id in 1035 aa" FT /protein_id="CAE41130.1" FT /translation="MTFTDLFVRRPVLALVVSTLILLLGLRATGELPVRQYPLTENTTI FT TITTQYPGASPELMQGFVTQPIAQAVATVENIDYLSSSSTQGRSLITVRMKLNADSNKA FT LTEIMAKVNQVKYRLPQEIYDPVLAKSSGEATSVAYVGFSSKTMPIPALTDYLQRVVLP FT QLSSIDGVASVDLYGGQTLAMRVWLDPARMAARGISAGEIAQALRDNNVQAAPGQTKGL FT YVVSNIQVNTDLNSLTDFRDMVVRQVDGAIVRLGDVGTVELGAASYDSSARMDGEKAVY FT FGLNATPVGNPLTIVERINALLPGIKQNLPPGVEVQVPFELARFINASIDEVRNTQLEA FT VLIVVAVIFLCLGSLRAVLVPVVTIPLSMLGAAAIMLSLGFSINLLTLLAMVLAIGLVV FT DDAIVVVENVHRHIEEGKSPVHAALVGAREVAGPVIAMTLTLAAVYAPIGLMGGLTGSL FT FKEFAFTLAAAVGVSGVIALTLSPVMSSFLLNSRVSEGWMARKAEHFFQRLGDAYGRVL FT DVSLRHRWVTGLIAVVVLANLPVLYGSAQRELAPAEDQAMILTAVKSPQHANIDYVEKF FT GQKWDTVMQEIPEQNGRWLINGSDGVANSIGGVNLVTWQARKRSADEIQGDLQNRVNAI FT EGSNTFAFQLPSLPGSTGGLPVQMVLMSAADYRVVYDAMETLKHAARASGLFMVVDSDL FT DYNNPVVRVDIDRAKANSLGVTMKAIGDTLAVLVGENYVNRFGMDGRSYDVIPQSPRGM FT RLTPQSLGQFYVKSASGAQVPLATLVKISMGVEPNRLTQFDQLNSATFQAIPMPGVTMG FT DAMQFLTEQARLLPPGFSHDWQSDARQYSQEGSALVVTFLFAIIVIYLVLAAQYESLRD FT PLIILVSVPMSICGALIPLALGMATINIYTQIGLVTLIGLISKHGILMVEFANEMQAHA FT GLDRRAAMERAARIRLRPILMTTAAMVVGLVPLLFASGAGAHSRFSLGLVIVVGMLVGT FT LFTLFVLPTMYTLLARDHRAAGQSARARELARLDAQAGAASPAHETAS" FT misc_feature complement(855083..858088) FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family" FT misc_feature complement(join(855086..855151,855197..855262, FT 855410..855475,855506..855562,856628..856693, FT 856739..856804,856904..856969,857015..857080)) FT /note="8 probable transmembrane helices predicted for FT BP0827 by TMHMM2.0 at aa 338-360, 375-397, 430-452, FT 467-489, 844-863, 873-895, 944-966 and 981-1003" FT misc_feature complement(858005..858094) FT /note="Signal peptide predicted for BP0827 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.857) with cleavage site FT probability 0.695 between residues 30 and 31" FT CDS complement(858107..859213) FT /transl_table=11 FT /locus_tag="BP0828" FT /product="probable HlyD-family secretion protein" FT /note="Similar to Pseudomonas aeruginosa probable Rnd FT efflux membrane fusion protein precursor Pa4206 TR:Q9HWH5 FT (EMBL:AE004837) (370 aa) fasta scores: E(): 4.6e-48, FT 48.011% id in 352 aa, and to Vibrio cholerae hypothetical FT protein Vc0165 TR:Q9KVI1 (EMBL:AE004106) (368 aa) fasta FT scores: E(): 1.7e-30, 36.593% id in 317 aa" FT /protein_id="CAE41131.1" FT /translation="MKSKKGTLAAGIVAAVAIAGGAWLYLRDAGSAPAWTMAPVKVAAA FT PAALGPLPVTLAGIGTLQASRQVVIPAEVDGRIARIAFESGQAVRAGQVLAQLNDAPEQ FT GDLARLQAQLRNARSVLERTRRLVPQQAATAEQLDQARAAYDQAAGEVRRVQALVEQKQ FT VKAPFDGVLGVRRVDLGQFVRAGEPVVSLTDARTMYADITLPEQALRDIRTGQAVSVGV FT DAYPGRAFDGVVSTIEPQVSAQARTLLVCATLPNPDGVLAPGMYVNARVALPERPGVIT FT VPETAVSYSAYGDSVYVVDDTVRPATVRQVFLKTAERVDSRIVVTEGLQAGQRVVTSGQ FT LRLHNGAAVEVFGQDTLAAGGGTALASH" FT misc_feature complement(858203..859018) FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein" FT misc_feature complement(859136..859192) FT /note="1 probable transmembrane helix predicted for BP0828 FT by TMHMM2.0 at aa 7-26" FT misc_feature complement(859157..859213) FT /note="Signal peptide predicted for BP0828 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.438 between residues 19 and 20" FT CDS complement(859337..860005) FT /transl_table=11 FT /locus_tag="BP0829" FT /product="putative transcriptional regulator" FT /note="Similar to Streptomyces lipmanii StgU TR:O88133 FT (EMBL:AJ006517) (210 aa) fasta scores: E(): 7.2e-21, FT 41.743% id in 218 aa, and to Streptomyces coelicolor FT hypothetical 23.3 kDa protein Sc2h4.05 TR:O86588 FT (EMBL:AL031514) (216 aa) fasta scores: E(): 1.1e-19, FT 39.524% id in 210 aa" FT /protein_id="CAE41132.1" FT /translation="MAGKRSYEDGCAGAHALDLVGERWALLVVRELLLGPKRFTDLRKG FT LPGISPNVLTQRLTELEAVAVLRRRKLDPPAGAWVYELTDWGRELEPVILQLGKWGARS FT PALPREAGLSVDSLVLSFRAMFDPRAAARLTATYELVLNGQHFWARVENGQIALLRGRP FT PARPDATIEASPNALAALVYDDGDLDAAVAAEQLRYSGPRAGIARFLGLFTLPEPAAQD FT " FT misc_feature complement(859682..859951) FT /note="HMMPfam hit to PF01638, Protein of unknown function FT DUF24" FT repeat_region 860124..860155 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 860124..861176 FT CDS 860226..861176 FT /transl_table=11 FT /locus_tag="BP0830" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41133.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 860484..860549 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 860607..861140 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(861145..861176) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 861259..863217 FT /transl_table=11 FT /gene="betT" FT /locus_tag="BP0831" FT /product="high-affinity choline transport protein" FT /note="Similar to Escherichia coli high-affinity choline FT transport protein BetT or B0314 or Z0401 or Ecs0360 FT SW:BETT_ECOLI (P17447) (677 aa) fasta scores: E(): 2.1e-92, FT 42.249% id in 658 aa, and to Pseudomonas aeruginosa FT probable choline transporter Pa5291 TR:Q9HTR3 FT (EMBL:AE004941) (661 aa) fasta scores: E(): 2.5e-188, FT 74.732% id in 653 aa. Also similar to BP0804, 37.348% FT identity (38.522% ungapped) in 656 aa overlap." FT /protein_id="CAE41134.1" FT /translation="MQNELKPTINKPVFLTSALFILLLVVFTIAAPATAQDFFNVIQAW FT ILGNASWFYILTVAIILLAVIFVAVSRYGNIKLGPDHSEPDYRDITWFAMLFSTGMGIG FT LMFFGVAEPVMHFIDPPVGEGGTALAAREAMKITFFHWGLHAWAIYASVALVLAFFCFR FT HGLPLTLRSALYPLIGERIYGPIGHAVDIFAIIGTVFGVATSLGLGVAQINSGLNHLFG FT VPVGIPTQIILIVISCGLATISVASGLDRGIRILSETNLLLAVVLLLFVLVLGPTVFLL FT QTFVQNTGAYLSDIVNKTFNLYAYEPTDWIGGWTLFYWGWWIAWSPFVGLFIARISRGR FT TIRQFVGGVLLVPAGFTLFWMTVFGDAAIHAILVEGMGSLAETVKADSSLALFAFLEHL FT PWGSVTSVVAIVMVVVFFVTSADSGALVVDQLASGGAESTPVWQRIFWSTLMGVVAIAL FT LLADGLQALQTATIASALPFSIILLLALWGLFKALRLDATKRSLLHRTITRTQPVRGQN FT WEHRLRNIVMMPRRAHVLRFISDVVRPAMDDVAEALRKEAYEAQVVDGEEGEVRLEVSH FT GVYLDFSYAVYPRSEVRPSLTPQEANDEEERRYFRAEVHLREGGQDYDIMGWTRDEVIG FT DILDQYERHRHYLHVVH" FT misc_feature 861259..861363 FT /note="Signal peptide predicted for BP0831 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.985 between residues 35 and 36" FT misc_feature join(861295..861363,861406..861465,861526..861594, FT 861694..861762,861823..861891,861934..862002, FT 862039..862107,862186..862254,862291..862350, FT 862453..862521,862591..862659,862669..862728) FT /note="12 probable transmembrane helices predicted for FT BP0831 by TMHMM2.0 at aa 13-35, 50-69, 90-112, 146-168, FT 189-211, 226-248, 261-283, 310-332, 345-364, 399-421, FT 445-467 and 471-490" FT misc_feature 861295..862746 FT /note="HMMPfam hit to PF02028, BCCT family transporter" FT misc_feature 862195..862224 FT /note="ScanRegExp hit to PS01303, BCCT family of FT transporters signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 863245..863946 FT /transl_table=11 FT /locus_tag="BP0832" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Yersinia pestis hypothetical FT transcriptional regulator TR:Q9ZC44 (EMBL:AL031866) (320 FT aa) fasta scores: E(): 3.9e-39, 54.091% id in 220 aa, and FT to Rhizobium meliloti putative LysR-type regulator Sma0498 FT TR:AAK64920 (EMBL:AE007219) (299 aa) fasta scores: E(): FT 2.7e-13, 31.364% id in 220 aa" FT /protein_id="CAE41135.1" FT /translation="MTLKQLEAFYWAATCASFAVAADRLHLSLSSLSKRIAELESALGL FT DLFDRSGHRAVLTAAGERLLPQARDLLASADRIRASLRAEPELGVRCRFGVGELSALTW FT LPRLIGRVRGRYPGLALEPYVDVGQVLKRKVAEGELDFAVVAGASSHSAIASAPVGQAH FT FAWVAAPSVAGAAQSLTPQLLAGTALVSLPDGAGTTRLLDPWLAGGAPAGPRLAGCPER FT ALRGTPRLRYL" FT misc_feature 863245..863307 FT /note="Signal peptide predicted for BP0832 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.941) with cleavage site FT probability 0.836 between residues 21 and 22" FT misc_feature 863251..863676 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 863290..863355 FT /note="Predicted helix-turn-helix motif with score 1212 FT (+3.31 SD) at aa 16-37, sequence ASFAVAADRLHLSLSSLSKRIA" FT misc_feature 863293..863385 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS join(863951..864079,864078..864908) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0833" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 43. The frameshift occurs within a FT polymeric tract of (CG)3. The sequence has been checked and FT believed to be correct. Similar to Rhizobium loti Mll8080 FT protein Mll8080 TR:Q984B1 (EMBL:AP003013) (285 aa) fasta FT scores: E(): 6.4e-18, 31.950% id in 241 aa, and to FT Agrobacterium tumefaciens Agr_c_1840p TR:AAK86810 FT (EMBL:AE008031) (325 aa) fasta scores: E(): 1.8e-12, FT 26.299% id in 308 aa" FT /db_xref="PSEUDO:CAE41136.1" FT variation 864078..864083 FT /note="(CG)3 in pertussis; (CG)4 in parapertussis and FT bronchiseptica" FT CDS 864905..865720 FT /transl_table=11 FT /locus_tag="BP0834" FT /product="probable DNA repair exonuclease" FT /note="Similar to Rhizobium loti 3',5'-cyclic-nucleotide FT phosphodiesterase CpdA homolog Mll9676 TR:Q98NZ2 FT (EMBL:AP003017) (269 aa) fasta scores: E(): 2.2e-26, FT 35.659% id in 258 aa, and to Caulobacter crescentus FT hypothetical protein Cc3556 TR:Q9A2K5 (EMBL:AE006014) (262 FT aa) fasta scores: E(): 5.4e-20, 35.484% id in 248 aa" FT /protein_id="CAE41137.1" FT /translation="MMRVLHISDTHFGTEREPVVHALHALADTLRPDLVVLGGDITQRA FT RRGQFAAARRFIQALQRPVLAVPGNHDIPLFNLAARLFDPYGNYRRALGAVLEPVYEDD FT RLLAIGVNSTRAARRKNGEVSRTQAQRVAQRLRDARPGQLRVVALHHPVHAMVESDQRN FT LLIGREFAVPAWVDAGVDLILGGHIHLPYVAPLHGKAGEAGRRAWTVQAGTAVSRRVRG FT RVPNSVNLIDYAAQADSPACTVQRWDFQTDSGAFVLFGQQVLALNRARG" FT misc_feature 864908..865597 FT /note="HMMPfam hit to PF02549, DNA repair exonuclease" FT CDS 865737..866540 FT /transl_table=11 FT /locus_tag="BP0835" FT /product="putative membrane protein" FT /note="Similar to Bacillus megaterium hypothetical 24.9 kDa FT protein in cytochrome p450meg gene 3'region TR:Q06074 FT (EMBL:Z21972) (216 aa) fasta scores: E(): 9.7e-13, 31.658% FT id in 199 aa, and to Caulobacter crescentus Pap2 FT superfamily protein Cc3019 TR:Q9A424 (EMBL:AE005965) (259 FT aa) fasta scores: E(): 1.3e-10, 36.134% id in 238 aa" FT /protein_id="CAE41138.1" FT /translation="MPLFVNLLADVSSIDPMESYAVWIAAHPIIIFVAAPVLAAAGALL FT LWQLVAGLPAGRRRTMVFAVLALVAVGVFGALAASVEHQGGMVAFDQALARALGLSMPA FT ALLWVLSWFTHLGDRTLLTLVAVGMTLTLLWRRRWVLAGACVAATGGAGALNWLLKRAF FT QRVRPDHLHGYTLADGWSFPSGHASASMAVYGIACYLMLRTLPARWRSSALAGVAALIV FT AIGVSRVLLQVHFLSDVVAGFAITAAWLALCVAVTEWALRVNARA" FT misc_feature join(865809..865877,865914..865973,866016..866084, FT 866145..866213,866271..866339,866373..866441, FT 866451..866519) FT /note="7 probable transmembrane helices predicted for FT BP0835 by TMHMM2.0 at aa 25-47, 60-79, 94-116, 137-159, FT 179-201, 213-235 and 239-261" FT misc_feature 866064..866522 FT /note="HMMPfam hit to PF01569, PAP2 superfamily" FT CDS complement(866524..866958) FT /transl_table=11 FT /locus_tag="BP0836" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti putative FT oxidoreductase protein Smc01572 TR:CAC46902 (EMBL:AL591790) FT (155 aa) fasta scores: E(): 0.00047, 32.593% id in 135 aa, FT and to Rhizobium loti probable oxidoreductase Mlr0254 FT TR:Q98N82 (EMBL:AP002994) (305 aa) fasta scores: E(): FT 0.016, 30.075% id in 133 aa" FT /protein_id="CAE41139.1" FT /translation="MTREITIIGLGATGSQAAHALLHAAPDVSLTLYDRQPLRCEPFRG FT QATLAASAAEALRESAVIVLALTDEREIDRTLERFSDGKVGVDLQGKRVLDLCPSPPDW FT VRALGAAVSEAGADYRHADPREVAGERAGPQALLRLMLAR" FT misc_feature complement(866899..866958) FT /note="Signal peptide predicted for BP0836 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.916) with cleavage site FT probability 0.715 between residues 20 and 21" FT CDS complement(866955..867389) FT /transl_table=11 FT /locus_tag="BP0837" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4093 TR:Q9HWT5 (EMBL:AE004825) (138 aa) fasta FT scores: E(): 1.2e-09, 40.164% id in 122 aa, and to FT Rhizobium meliloti hypothetical transmembrane protein FT Smc01805 TR:CAC45823 (EMBL:AL591786) (143 aa) fasta scores: FT E(): 3e-08, 34.815% id in 135 aa" FT /protein_id="CAE41140.1" FT /translation="MNIPAAEPRARMTLAEFHRLLADQHPFAQVLGIDVVDIGHGTARA FT VLPARDTHQRLGGIVAGPMLMGLADLTMYAAVVGATGQAGAVTANLTIHFLRKTSGAAV FT IADARVLKTGRLAMAEAILRCDGADEPVAHVVSAWAVPAP" FT CDS complement(867391..867969) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0838" FT /product="probable TetR-family transcriptional regulator FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The insertion occurred near the FT N-terminus. Similar to Aquifex aeolicus transcriptional FT regulator Acrr2 or Aq_2179 TR:O67927 (EMBL:AE000776) (192 FT aa) fasta scores: E(): 3.3e-05, 32.479% id in 117 aa, and FT to Caulobacter crescentus transcriptional regulator, TetR FT family Cc3123 TR:Q9A3S9 (EMBL:AE005976) (202 aa) fasta FT scores: E(): 0.00016, 31.206% id in 141 aa" FT misc_feature complement(867802..867942) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT misc_feature complement(867829..867894) FT /note="Predicted helix-turn-helix motif with score 1613 FT (+4.68 SD) at aa 18-39, sequence TTIRAIAKEADCTTGAIYPWFD" FT CDS complement(867963..868913) FT /transl_table=11 FT /locus_tag="BP0839" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41142.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 867963..867994 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(867963..868383) FT misc_feature complement(867999..868532) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(868382..869015) FT misc_feature complement(868590..868655) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS 869226..870383 FT /transl_table=11 FT /locus_tag="BP0840" FT /product="outer membrane porin protein precursor" FT /note="Identical to the previously sequenced Bordetella FT pertussis outer membrane porin protein precursor FT SW:OMP_BORPE (Q04064) (385 aa) fasta scores: E(): 4e-149, FT 100.000% id in 385 aa. Also similar to BP2851 (53.728%% FT identity in 389 aa overlap), and BP0267 (58.844% identity FT in 294 aa overlap), and its C-terminus is similar to BP0138 FT (66.667% identity in 90 aa overlap)." FT /protein_id="CAE41143.1" FT /translation="MKKTLLAAALLAGFAGAAQAETSVTLYGIIDTGIGYNDVDFKVKG FT ANADDSDFKYNHSRFGMINGVQNGSRWGLRGTEDLGDGLQAVFQLESGFNSGNGNSAQD FT GRLFGRQATIGLQSESWGRLDFGRQTNIASKYFGSIDPFGAGFGQANIGMGMSAMNTVR FT YDNMVMYQTPSYSGFQFGIGYSFSANDKDADAVNRVGFATADNVRAITTGLRYVNGPLN FT VALSYDQLNASNNQAQGEVDATPRSYGLGGSYDFEVVKLALAYARTTDGWFGGQGYPVA FT VTLPSGDKFGGFGVNTFADGFKANSYMVGLSAPIGGASNVFGSWQMVDPKLTGGDEKMN FT VFSLGYTYDLSKRTNLYAYGSYAKNFAFLEDAKSTAVGVGIRHRF" FT misc_feature 869226..869285 FT /note="Signal peptide predicted for BP0840 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 20 and 21" FT misc_feature 869415..869609 FT /note="HMMPfam hit to PF00267, Gram-negative porin" FT misc_feature 869724..869771 FT /note="ScanRegExp hit to PS00225, Crystallins beta and FT gamma 'Greek key' motif signature." FT misc_feature 870225..870380 FT /note="HMMPfam hit to PF00267, Gram-negative porin" FT CDS 870572..870931 FT /transl_table=11 FT /gene="nuoA" FT /locus_tag="BP0841" FT /product="probable NADH-ubiquinone oxidoreductase chain 3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 7 Nqo7 SW:NQO7_PARDE (P29919) (121 aa) FT fasta scores: E(): 5e-28, 60.345% id in 116 aa, and to FT Rhodobacter capsulatus NADH dehydrogenase I chain A NuoA FT SW:NUOA_RHOCA (O84969) (126 aa) fasta scores: E(): 1.1e-28, FT 60.345% id in 116 aa" FT /protein_id="CAE41144.1" FT /translation="MNLHPYFPVLLFILVATLIGFALLTAGSLLGPRRPYAEKLSPYEC FT GFEAFEDARMKFDVRYYLVAILFILFDLEIAFLFPWAIAQGTVGLVGFWTVMVFLAVLT FT VGFIYEWKKGALDWE" FT misc_feature 870572..870646 FT /note="Signal peptide predicted for BP0841 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.970) with cleavage site FT probability 0.396 between residues 25 and 26" FT misc_feature join(870599..870667,870752..870820,870830..870898) FT /note="3 probable transmembrane helices predicted for FT BP0841 by TMHMM2.0 at aa 10-32, 61-83 and 87-109" FT misc_feature 870683..870925 FT /note="HMMPfam hit to PF00507, FT NADH-ubiquinone/plastoquinone oxidoreductase, chain 3" FT CDS 870968..871444 FT /transl_table=11 FT /gene="nuoB" FT /locus_tag="BP0842" FT /product="NADH-ubiquinone oxidoreductase, 20 kDa subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Arabidopsis thaliana NADH-ubiquinone FT oxidoreductase 20 kDa subunit, mitochondrial precursor FT T22p22_160 SW:NUKM_ARATH (Q42577) (218 aa) fasta scores: FT E(): 4e-51, 85.714% id in 140 aa, and to Neisseria FT meningitidis NADH dehydrogenase I, B subunit Nmb0242 FT TR:Q9K1C2 (EMBL:AE002381) (160 aa) fasta scores: E(): FT 1e-53, 81.646% id in 158 aa" FT /protein_id="CAE41145.1" FT /translation="MAIDGILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHA FT GAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCAN FT GGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKIRLTNTIAR" FT misc_feature 871085..871408 FT /note="HMMPfam hit to PF01058, NADH ubiquinone FT oxidoreductase, 20 Kd subunit" FT misc_feature 871319..871369 FT /note="ScanRegExp hit to PS01150, Respiratory-chain NADH FT dehydrogenase 20 Kd subunit signature. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 871519..872142 FT /transl_table=11 FT /gene="nuoC" FT /locus_tag="BP0843" FT /product="respiratory-chain NADH dehydrogenase, 30 kDa FT subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Neurospora crassa NADH-ubiquinone FT oxidoreductase 30.4 kDa subunit, mitochondrial precursor FT Nuo-31 SW:NUGM_NEUCR (P23710) (283 aa) fasta scores: E(): FT 5.9e-22, 41.250% id in 160 aa, and to Neisseria FT meningitidis NADH dehydrogenase I chain C NuoC or Nmb0243 FT SW:NUOC_NEIMB (Q9K1C1) (197 aa) fasta scores: E(): 4.8e-43, FT 55.172% id in 203 aa" FT /protein_id="CAE41146.1" FT /translation="MMMTRLETLKNNLQAAFGQDLALTESLGELTLEVAAEQWFSACTK FT LRTDPALRFESCIDLCGVDYLTWGNGTQPEEKTGPVTRGRYAVVVHLLSIEHNWRLRVR FT TWAPDDEFPMVSSLLECWPGVNWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKD FT FPLSGTVEMRYDPEQKRVIYQPVTIDPREITPRVVREDSYGMGR" FT misc_feature 871825..872034 FT /note="HMMPfam hit to PF00329, Respiratory-chain NADH FT dehydrogenase, 30 Kd subunit" FT misc_feature 871903..871968 FT /note="ScanRegExp hit to PS00542, Respiratory chain NADH FT dehydrogenase 30 Kd subunit signature." FT CDS 872145..873401 FT /transl_table=11 FT /gene="nuoD" FT /locus_tag="BP0844" FT /product="respiratory-chain NADH dehydrogenase, 49 kDa FT subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 4 Nqo4 SW:NQO4_PARDE (P29916) (412 aa) FT fasta scores: E(): 1.6e-56, 59.277% id in 415 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain D NuoD or FT Nma0016 TR:Q9JX81 (EMBL:AL162752) (418 aa) fasta scores: FT E(): 1.1e-134, 74.760% id in 416 aa" FT /protein_id="CAE41147.1" FT /translation="MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR FT ATEKLAEHKTFIQALPYMDRLDYVSMMCNEHAYVMAIEKLLGIEAPLRAQYIRVMFDEI FT TRVLNHLMSLGSHALDVGAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDL FT PDTMPQYGDSSKYRGEKEVRAMNDARSGSLLDFIEDFTNRFPSCVDEYETLLTDNRIWK FT QRLVGIGVVDPDRAKALGFTGPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYD FT RYLVRVAEMRESNRIIRQCVEWLRNNPGPVMIENHKIAPPSRTAMKSNMEELIHHFKLF FT SEGFHVPPGEAYAAVEHPKGEFGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMI FT ADAVTIIGTQDIVFGEIDR" FT misc_feature 872271..872306 FT /note="ScanRegExp hit to PS00535, Respiratory chain NADH FT dehydrogenase 49 Kd subunit signature." FT misc_feature 872502..872636 FT /note="HMMPfam hit to PF00346, Respiratory-chain NADH FT dehydrogenase, 49 Kd subunit" FT misc_feature 872721..873398 FT /note="HMMPfam hit to PF00346, Respiratory-chain NADH FT dehydrogenase, 49 Kd subunit" FT CDS 873447..873941 FT /transl_table=11 FT /gene="nuoE" FT /locus_tag="BP0845" FT /product="respiratory-chain NADH dehydrogenase I, 24 kDa FT subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Rattus norvegicus NADH-ubiquinone FT oxidoreductase 24 kDa subunit precursor NdufV2 SW:NUHM_RAT FT (P19234) (241 aa) fasta scores: E(): 3.8e-22, 39.490% id in FT 157 aa, and to Neisseria meningitidis NADH dehydrogenase I, FT E subunit Nmb0245 TR:Q9K1B9 (EMBL:AE002381) (157 aa) fasta FT scores: E(): 8.2e-37, 62.000% id in 150 aa" FT /protein_id="CAE41148.1" FT /translation="MLLSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEI FT LEDVANYIGVPPIAVQEVATFYNMFDVKPVGTHKIAVCTNLPCALRDGEKAADYLKRKL FT GVDFRETTADGRFTLIEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVDGLKSQGES FT A" FT misc_feature 873447..873920 FT /note="HMMPfam hit to PF01257, Respiratory-chain NADH FT dehydrogenase 24 Kd subunit" FT CDS 873938..875305 FT /transl_table=11 FT /gene="nuoF" FT /locus_tag="BP0846" FT /product="respiratory-chain NADH dehydrogenase, 51 kDa FT subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Rhizobium meliloti NADH dehydrogenase I FT chain F 2 NuoF2 SW:NUF2_RHIME (P56913) (421 aa) fasta FT scores: E(): 3.8e-86, 52.518% id in 417 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain F NuoF or FT Nma0014 TR:Q9JX83 (EMBL:AL162752) (433 aa) fasta scores: FT E(): 2.7e-133, 77.240% id in 413 aa" FT /protein_id="CAE41149.1" FT /translation="MNAPDLYKRLAQGLDPNPLNDLSISMCLHGRHIAPQIMADVDGEN FT WRLQEYVKRGGYEALRKILTTGMTPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFP FT GQKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYE FT RFEEALEEARAAGFLGDKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFK FT PPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERP FT GNYEIPMGTPFSKLLELAGGMRGGRKLKAVIPGGSSAPVLPADIMMDCTMDYDAIAKAG FT SMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGR FT PEDLDMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEHKSCVVPQYL" FT misc_feature 874052..874909 FT /note="HMMPfam hit to PF01512, Respiratory-chain NADH FT dehydrogenase 51 Kd subunit" FT misc_feature 875048..875083 FT /note="ScanRegExp hit to PS00645, Respiratory-chain NADH FT dehydrogenase 51 Kd subunit signature 2. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 875321..877648 FT /transl_table=11 FT /gene="nuoG" FT /locus_tag="BP0847" FT /product="NADH-ubiquinone oxidoreductase, 75 kDa subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Solanum tuberosum NADH-ubiquinone FT oxidoreductase 75 kDa subunit, mitochondrial precursor FT SW:NUAM_SOLTU (Q43644) (738 aa) fasta scores: E(): 2.2e-59, FT 36.006% id in 711 aa, and to Neisseria meningitidis NADH FT dehydrogenase I chain G NuoG or Nma0010 TR:Q9JX87 FT (EMBL:AL162752) (753 aa) fasta scores: E(): 1.1e-89, FT 48.383% id in 773 aa" FT /protein_id="CAE41150.1" FT /translation="MVELTVDGNQVEVPEGSMVMHAAQKLGLYVPHFCYHKKLSIAANC FT RMCLVEVEKAPKALPACATPVTNGMVVHTCSEKAKAAQKSVMEFLLINHPLDCPICDQG FT GECQLQDLAVGYGGSSSRYKEEKRVVFHKDLGPLVSAEEMARCIHCTRCVRFGQEIAGV FT MELGMLNRGEHAEITSFVGRSIESELSGNMIDLCPVGALTSKPFRYSARTWELARRRSV FT SPHDSMGANLVVQVKGDCALRVVPFENEALNECWISDRDRFSYEGLNSDDRLAAPMIKG FT ADGKWQEASWADALQAVAQGLSRVRESFGAGQIGALASEYATTEEFSLLGRLVRALGSE FT NIDFRLRQTDAGFDAALSGAPWLGMPVAELDNLDRVLVIGSFLRKDHPLMAQRLRQAAK FT RGTQVLLLDAAADDPLMPVAGRLTVAPSGLASALAEVAVALAQAKGQAVPAEFAAVAAG FT EGAKQIAASLASGSNAAVLLGNMAVNAPQAATLAANAQAVAQLAGAKLGFLTAGGNTVG FT GYLAGAVPGKGGKNAAAMLADPLKAYIVLHAEPSLDADNAPQALAALRGAQFAVALTPY FT RSAAQGWADVMLPVAPFTETSGTFVNAQGQPQSFKGTVAPFGQTRPAWKVLRVLGNVLH FT LAGFDEETSETVRDAALAGGVEARLSNAISAPLGLGQPLDALERVADVPIYRTDAIVRR FT SEPLQAAPASRAPKARMNGRTLASLGVSAGDKVRVSGAAGAIELEAALDEAVADRAVRV FT AAAFEQTAALGGAFGQISVERV" FT misc_feature 875324..875524 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 875612..875650 FT /note="ScanRegExp hit to PS00642, Respiratory-chain NADH FT dehydrogenase 75 Kd subunit signature 2. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 875756..875788 FT /note="ScanRegExp hit to PS00643, Respiratory-chain NADH FT dehydrogenase 75 Kd subunit signature 3. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 875975..876019 FT /note="ScanRegExp hit to PS00066, FT Hydroxymethylglutaryl-coenzyme A reductases signature 1." FT CDS 877648..878721 FT /transl_table=11 FT /gene="nuoH" FT /locus_tag="BP0848" FT /product="NADH-ubiquinone oxidoreductase, chain H" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 8 Nqo8 SW:NQO8_PARDE (P29920) (345 aa) FT fasta scores: E(): 5.6e-45, 44.109% id in 331 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain H NuoH or FT Nma0009 TR:Q9JX88 (EMBL:AL162752) (358 aa) fasta scores: FT E(): 7.6e-78, 58.011% id in 362 aa" FT /protein_id="CAE41151.1" FT /translation="MEWLNVLESHGQALLGPVAWMVVWSLVKIVVIAVPIILCVAYLTY FT WERKMIGAMHVRLGPTRVGFKGLLQPFADVFKLLTKEVVVPSAANKVLFVVAPVVTLMP FT ALAAWAVVPFGPEVVLANVNAGLLYIMAITSIGVYGVIVAGWASNSKYAFLGALRASAQ FT MVSYELAIGFVLVSVLLVSGSLNMSEIVLGQGRGWFAERGLTFLSWNWLPLLPLFIIYV FT ISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMILLSCMAAIMFLGG FT WMSPIDIAPLNWIPGWIWLGIKTFCVVSMFVWFRASFPRYRYDQIMRLGWKIFIPLTGV FT WLVVLAIWMQTPWNIWR" FT misc_feature join(877705..877773,877921..877980,878023..878091, FT 878152..878220,878263..878322,878416..878484, FT 878527..878595,878632..878700) FT /note="8 probable transmembrane helices predicted for FT BP0848 by TMHMM2.0 at aa 20-42, 92-111, 126-148, 169-191, FT 206-225, 257-279, 294-316 and 329-351" FT misc_feature 877711..878700 FT /note="HMMPfam hit to PF00146, NADH dehydrogenase" FT misc_feature 878344..878385 FT /note="ScanRegExp hit to PS00668, Respiratory-chain NADH FT dehydrogenase subunit 1 signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 878743..879231 FT /transl_table=11 FT /gene="nuoI" FT /locus_tag="BP0849" FT /product="NADH-ubiquinone oxidoreductase, chain I" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 9 Nqo9 SW:NQO9_PARDE (P29921) (163 aa) FT fasta scores: E(): 2.3e-38, 65.132% id in 152 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain I NuoI or FT Nma0008 or nmb0251 TR:Q9JQM2 (EMBL:AL162752) (159 aa) fasta FT scores: E(): 7.1e-48, 72.956% id in 159 aa" FT /protein_id="CAE41152.1" FT /translation="MEAIKDFFGSLLLTELFKGLRLTGKYFFKRKVTLRYPMEKTPTSA FT RFRGLHALRRYPNGEERCIACKLCEAVCPALAITIESEQRDDGTRRTTRYDIDLTKCIF FT CGFCEESCPVDSIVETHIHEYHGEKRGDLYFTKDMLLAVGDRYEAEIARRRAEDAPYR" FT misc_feature 878908..878979 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature 878929..878964 FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 879025..879096 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature 879046..879081 FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 879055..879120 FT /note="ScanRegExp hit to PS00028, Zinc finger, C2H2 type, FT domain signature." FT CDS 879249..879896 FT /transl_table=11 FT /gene="nuoJ" FT /locus_tag="BP0850" FT /product="NADH-ubiquinone oxidoreductase, chain J" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 10 Nqo10 SW:NQOA_PARDE (P29922) (200 FT aa) fasta scores: E(): 4.2e-21, 46.927% id in 179 aa, and FT to Neisseria meningitidis NADH dehydrogenase I, J subunit FT Nmb0253 TR:Q9K1B2 (EMBL:AE002382) (223 aa) fasta scores: FT E(): 5.4e-28, 46.009% id in 213 aa" FT /protein_id="CAE41153.1" FT /translation="MTFTTVLFYILAFVLVIAAFRVITARSPVTAVLHLILAFANAAMI FT WMLLGAEFLALLLVLVYVGAVMVLFLFVVMMLDIRIDSLRDGLKTYLPLGLVIGVVLVL FT EMAFVLGSTWYGAGPQAPVAGDYNNARALGEVMYTQYVYAIEVGAALLLVGMVAAIALT FT LRRRRDAKYNDPVAAVRVRAKDRFRMVKMTAQSDRAQARVASPSADAQGEQQ" FT misc_feature 879249..879320 FT /note="Signal peptide predicted for BP0850 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.881) with cleavage site FT probability 0.278 between residues 24 and 25" FT misc_feature 879258..879740 FT /note="HMMPfam hit to PF00499, FT NADH-ubiquinone/plastoquinone oxidoreductase chain 6" FT misc_feature join(879261..879320,879339..879398,879411..879479, FT 879516..879584,879672..879740) FT /note="5 probable transmembrane helices predicted for FT BP0850 by TMHMM2.0 at aa 5-24, 31-50, 55-77, 90-112 and FT 142-164" FT CDS 879893..880201 FT /transl_table=11 FT /gene="nuoK" FT /locus_tag="BP0851" FT /product="NADH-ubiquinone oxidoreductase, chain K" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 11 Nqo11 SW:NQOB_PARDE (P29923) (101 FT aa) fasta scores: E(): 5.4e-23, 69.388% id in 98 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain K NuoK or FT Nma0005 or Nmb0254 TR:Q9JQU9 (EMBL:AL162752) (101 aa) fasta FT scores: E(): 1e-23, 69.000% id in 100 aa" FT /protein_id="CAE41154.1" FT /translation="MTLTLAHYLILGAILFAIGIFGIFLNRRNLIILLMSIELVLLAVN FT MNFVAFSSWFGDIAGQVFVFFILTVAAAEAAIGLAILVLLFRNLNTINVDELDRLKG" FT misc_feature 879899..880198 FT /note="HMMPfam hit to PF00420, FT NADH-ubiquinone/plastoquinone oxidoreductase chain 4L" FT misc_feature join(879902..879967,879980..880048,880076..880144) FT /note="3 probable transmembrane helices predicted for FT BP0851 by TMHMM2.0 at aa 4-25, 30-52 and 62-84" FT CDS 880219..882231 FT /transl_table=11 FT /gene="nuoL" FT /locus_tag="BP0852" FT /product="NADH-ubiquinone oxidoreductase, chain L" FT /EC_number="1.6.5.3" FT /note="Similar to Synechococcus sp NADH-plastoquinone FT oxidoreductase chain 5 NdhF SW:NU5C_SYNP2 (P31971) (664 aa) FT fasta scores: E(): 3.2e-81, 42.285% id in 674 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain L NuoL or FT Nma0002 SW:NUOL_NEIMA (Q9JX92) (674 aa) fasta scores: E(): FT 9.9e-147, 61.367% id in 673 aa" FT /protein_id="CAE41155.1" FT /translation="MSSSPNLYLLIALAPLVGAILAGQFGTGFLGRPIGRRGSHVITIL FT GVLISTIGSFVVLGDVLDGHTYDGTVYTWSLIGQTKLEIGFLIDPLSAMMMVVVTSVSL FT MVHIYTIGYMADDPGYQRFFAYISLFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGF FT WYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAYAGTMHYADVFAQADKLAGETLPGT FT DWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGPTPISALIHAATMVTAGIFMVARF FT SPLFELSDTALSFVIVIGAIGALFLGILGIIQNDIKRVVAYSTLSQLGYMTVALGASAY FT SVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALV FT GTPFFSGFYSKEHIIEAAGAANVWGASFAYYSTLIGVFVTSLYSFRVYFLVFHGKERFD FT AHGHGHHGDAHHDDHGHHGGTPHESPWVVTLPLVLLAIPSVLIGAWVVEPMLFGKFFDG FT VIKVLPQHPAMAELGHEWHGWVAFGLHSVQTVPFWLVVAGAVIAWYCYLINPRVPAAIQ FT STFSGVYKLLENKYYVDWINEQIIARGARCLGYGLWQTGDRGIIDGVLVNGSARVVGWV FT AAISRHLQSGFIYHYAFAMIIGIMALVTFFVLIPQ" FT misc_feature 880219..880284 FT /note="Signal peptide predicted for BP0852 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.969) with cleavage site FT probability 0.919 between residues 22 and 23" FT misc_feature join(880246..880314,880333..880401,880495..880563, FT 880582..880635,880645..880713,880774..880842, FT 880885..880938,880999..881058,881086..881154, FT 881173..881241,881251..881319,881380..881439, FT 881497..881565,881668..881736,881860..881919, FT 882154..882222) FT /note="16 probable transmembrane helices predicted for FT BP0852 by TMHMM2.0 at aa 10-32, 39-61, 93-115, 122-139, FT 143-165, 186-208, 223-240, 261-280, 290-312, 319-341, FT 345-367, 388-407, 427-449, 484-506, 548-567 and 646-668" FT misc_feature 880426..880605 FT /note="HMMPfam hit to PF00662, NADH-Ubiquinone FT oxidoreductase (complex I), chain 5 N-terminus" FT misc_feature 880636..881526 FT /note="HMMPfam hit to PF00361, FT NADH-Ubiquinone/plastoquinone (complex I), various chains" FT CDS 882231..883730 FT /transl_table=11 FT /gene="nuoM" FT /locus_tag="BP0853" FT /product="NADH-ubiquinone oxidoreductase, chain M" FT /EC_number="1.6.5.3" FT /note="Similar to Marchantia polymorpha NADH-ubiquinone FT oxidoreductase chain 4 Nd4 or Nad4 SW:NU4M_MARPO (P26848) FT (495 aa) fasta scores: E(): 1.3e-83, 47.510% id in 482 aa, FT and to Neisseria meningitidis NADH dehydrogenase chain M FT NuoM or Nma2229 TR:Q9JSL7 (EMBL:AL162758) (498 aa) fasta FT scores: E(): 8.3e-115, 64.414% id in 503 aa" FT /protein_id="CAE41156.1" FT /translation="MASDMASNNFPWLTLAIFVPIVFGLLVLALGRDDRPGLTRGLSLI FT GALAGFLVTIPLYTGFEAGTAQMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAFITI FT IVVGAGWQVITSRVAQYMAAFLILSGLMVGVFAALDGMLFYVFFEATLIPMYIIIGVWG FT GPNRVYAAFKFFLYTLLGSLLTLVAFVYLWNVSGGSFDIQTWHQTKLGYTPQVLIFVAL FT LAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHGL FT AGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFIFNTAGLEGAIVQM FT ISHGFVSGAMFLCIGVLYDRMHSRRIADYGGVVNVMPRFVTFFVLFSMANSGLPATSGF FT VGEFLVIMGAVEYNFWIGLLTATALILGASYSLWMLKRVAFGDIGNDRVREMTDLSGRE FT FLILGVMAIAVLFMGIYPKPFTDVMHVSVEALLQHVAVSKL" FT misc_feature join(882255..882323,882342..882410,882504..882572, FT 882591..882644,882654..882722,882741..882809, FT 882867..882935,882972..883040,883068..883136, FT 883155..883223,883236..883304,883365..883433, FT 883461..883529,883590..883658) FT /note="14 probable transmembrane helices predicted for FT BP0853 by TMHMM2.0 at aa 10-32, 39-61, 93-115, 122-139, FT 143-165, 172-194, 214-236, 249-271, 281-303, 310-332, FT 337-359, 380-402, 412-434 and 455-477" FT misc_feature 882642..883514 FT /note="HMMPfam hit to PF00361, FT NADH-Ubiquinone/plastoquinone (complex I), various chains" FT CDS 883741..885225 FT /transl_table=11 FT /gene="nuoN" FT /locus_tag="BP0854" FT /product="NADH-ubiquinone oxidoreductase, chain N" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 14 Nqo14 SW:NQOE_PARDE (P29926) (499 FT aa) fasta scores: E(): 1.7e-60, 41.004% id in 478 aa, and FT to Neisseria meningitidis NADH dehydrogenase chain N NuoN FT or Nma2228 TR:Q9JSL8 (EMBL:AL162758) (481 aa) fasta scores: FT E(): 8.4e-55, 49.290% id in 493 aa" FT /protein_id="CAE41157.1" FT /translation="MMQSHLDFALATPEILLLVLGLAILLIDAVSSHPERKTTFVLTLA FT TLAALTVVSLLQWRDGVEGQTFNGLYVTDSLAHLLKVASYIAVAATLVYGRIYAQQRDM FT MQRGGELYVLTLFALLGQMVMISAGNLISIYLGLELMSLALYALIALRREDKVATEAAM FT KYFVLGALASGFLLYGMSMVYGATGHLDLAKIAEVIASGQAKQLPLVFGVVFLVSGLAF FT KLGAVPFHMWLPDVYQGSPTAVTLILGAAPKLAAFAITLRLLVDGLHGLAADWQPMLMI FT LAVLSLAIGNLTAIVQTNFKRMLAYSTISHTGFVLLGLMAGVVDGKPDAAASAYGAALF FT YMLTYVLTTLGTFGIILLLARQGFECEQIDDLKGLNRRNPWHAAIVLLLMFSLAGIPPL FT VGFYAKLAVLQALVEAGHVALAVVAVMFSLIGAFYYLRVVKVVYFDDPVDQPAALAVTA FT GQRSILSLNGALILVLGILPGGLMALCVQVIQASLG" FT misc_feature join(883768..883836,883855..883908,883966..884034, FT 884071..884124,884134..884196,884233..884301, FT 884359..884427,884464..884532,884575..884628, FT 884647..884709,884752..884820,884881..884949, FT 884977..885045,885145..885213) FT /note="14 probable transmembrane helices predicted for FT BP0854 by TMHMM2.0 at aa 10-32, 39-56, 76-98, 111-128, FT 132-152, 165-187, 207-229, 242-264, 279-296, 303-323, FT 338-360, 381-403, 413-435 and 469-491" FT misc_feature 884122..885036 FT /note="HMMPfam hit to PF00361, FT NADH-Ubiquinone/plastoquinone (complex I), various chains" FT CDS 885242..885571 FT /transl_table=11 FT /locus_tag="BP0855" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis hypothetical inner FT membrane protein Nma2227 TR:Q9JSL9 (EMBL:AL162758) (116 aa) FT fasta scores: E(): 4.5e-10, 36.634% id in 101 aa" FT /protein_id="CAE41158.1" FT /translation="MNQTAAVWLLIALALVSANLPFLSERVFALLPYKRAGVHAPKPFW FT LRLCEVLVWYAVVGLLGFAFEAQLGNRFAQAWEFYAITFSLFLVLGYPGFVYRYLYKKR FT RPARA" FT misc_feature 885242..885295 FT /note="Signal peptide predicted for BP0855 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.969) with cleavage site FT probability 0.300 between residues 18 and 19" FT misc_feature join(885251..885310,885371..885433,885476..885544) FT /note="3 probable transmembrane helices predicted for FT BP0855 by TMHMM2.0 at aa 4-23, 44-64 and 79-101" FT CDS 885872..888103 FT /transl_table=11 FT /gene="bfrD" FT /locus_tag="BP0856" FT /product="probable TonB-dependent receptor for iron FT transport" FT /note="Similar to Pseudomonas aeruginosa hydroxamate-type FT ferrisiderophore receptor PiuA or Fiu or Pa4514 TR:O68590 FT (EMBL:AF051690) (753 aa) fasta scores: E(): 1.1e-95, FT 37.317% id in 753 aa, and to Caulobacter crescentus FT TonB-dependent receptor Cc0028 TR:Q9AC38 (EMBL:AE005677) FT (851 aa) fasta scores: E(): 1.7e-47, 38.562% id in 765 aa" FT /protein_id="CAE41159.1" FT /translation="MKFYSSHPMPESLAAAIAVPLLGLLPAAQAASTAVQLPSVTVEGE FT YSSYQPESAQSPKFTAPLADTPRTVQVIPERLIQDQGASDLEAVLRNAPGISMTAGEGG FT RPASDLPFIRGQNSASSLFVDGLRDPSTQSRDTFNLEQVDVVKGPDSVFSGRGGAGGSI FT NLVTKTPRNQDFTEVQAGIGTAETYRGTIDGNWVLGENTALRLNLLGTRDTVPGRDKAV FT EFSRVGIAPSLRLGLSGPTRVTLGLYHYRHRRVPDYSIPYDPRTGTPITETIGVSRRNF FT YGLVRRDSGDTEDYAATVKWEHDLANGFKVENLARYSRATVEQITTMPELKTADLAKGL FT VYRNLRASYQVNDSFANRTDLRGTFDTGQWRHTFDLGGEFATSRRSRDRYKQEIPDAAS FT PCSPVTDGNNPALCASLRDPDPHVDFPGTVRRNHNPARYHTDILSLYGFDTIAFDEQWQ FT LNLGLRWDHYKTSGRNLPVRGAKPPVYERAARTDNLFNYQLGLVYKPRPDGSVYASYGT FT ASTPSAVSDYAPADSISGTSQQLKPERSEAIEIGTKWQVLDRRLLVTGAMFRETRKNTS FT IEVAEGLRAPAGKSRVTGMELGVAGSLTPRWDVYGGYALLDSKLVRASHKSGAQGQPLP FT SAPRHAFSIWSTYKLLPELTVGAGAFYRSKVYGNADAGYNKDGTPKARWVPAYWRFDAM FT AAYQLNKHLTAQLNVYNLLDKTYYAKTYRSHYAALGPGRSAMLTFKLSY" FT misc_feature 885872..885961 FT /note="Signal peptide predicted for BP0856 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.962 between residues 30 and 31" FT misc_feature 887765..888100 FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT CDS 888327..890585 FT /transl_table=11 FT /gene="bfrE" FT /locus_tag="BP0857" FT /product="probable TonB-dependent receptor for iron FT transport" FT /note="Similar to Pseudomonas aeruginosa hydroxamate-type FT ferrisiderophore receptor PiuA or Fiu or Pa4514 TR:O68590 FT (EMBL:AF051690) (753 aa) fasta scores: E(): 3.4e-106, FT 43.742% id in 775 aa, and to Escherichia coli probable FT TonB-dependent receptor YbiL precursor YbiL or B0805 FT SW:YBIL_ECOLI (P75780) (760 aa) fasta scores: E(): 7.2e-50, FT 35.058% id in 773 aa" FT /protein_id="CAE41160.1" FT /translation="MKSLDSYSASTLANSLAAAIAVPALCLMPGAQAQTSAGVTQLAPV FT QVEGEASPYQATTVQSSKMTAPLLDTPRTVQVVPQQVIQDQAATNLQDVLRNSPGITMG FT AGEGGRAGGDLPIIRGQNAAGSIFVDGVRDPSTQIRDTFNLEQVEIIKGPDSVYSGRGG FT AGGSINLVSKTPKARDFAEGSVQIGTDSNYRATADGNWLLGDNAAFRLNLMGNKGDVPG FT RDHAVDFSRWGVAPTLQLGVGTPTRITLGYYHYQDDSMPDYAIPYDPKSGQPVTETQGV FT SRKNFYGLTGRDFMKSRDDVATLAIDHDFSSKLRLRNVTRYGRSVTDYAATNPDDSKGN FT VPNGLVYRALKAGYYTNKTFTNQTDLSGEFETGSLQHSFDVGFEYSNIKQDKDSYTQTI FT AKGAMPCKVGANDASNPALCTSLWDPDPHDYYPGHLSRNDNPARYSTDTIALYGFDTIK FT FNEQWQASVGLRWDNYRVSGSNIARGRNDPASTPAFYSTSREDNLFNYQLGLAYKPVPN FT GTIYASYGTSSTPSAVAGSNVSDAVTVSNESLAPEKSRTVEVGTKWQLFDDRLTLSGAL FT FQDIRKNTSVAVSATETEQIGKAKVRGIELGFSGSITPKWNVYGGYTFMDSELVEGAYN FT SGAVGQDLPNTPRNAFSLWTTYKLVPQLTVGGGAYYVDKVYGNADNGRNADGTPKARWV FT PSYWRFDAMAAYEFNDHLTAQLNVMNIFDKTYYTKAYAAHYAALGTGRAAVLSFNIKY" FT misc_feature 888327..888425 FT /note="Signal peptide predicted for BP0857 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 33 and 34" FT misc_feature 890247..890582 FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT CDS 890698..891216 FT /transl_table=11 FT /locus_tag="BP0858" FT /product="probable GnaT-family acetyltransferase" FT /note="Similar to Caulobacter crescentus acetyltransferase, FT GnaT family Cc1083 TR:Q9A9B1 (EMBL:AE005785) (173 aa) fasta FT scores: E(): 3.2e-14, 32.530% id in 166 aa, and to FT Rhizobium loti Mll3172 protein Mll3172 TR:Q98GU4 FT (EMBL:AP003001) (179 aa) fasta scores: E(): 1.5e-13, FT 32.544% id in 169 aa" FT /protein_id="CAE41161.1" FT /translation="MTNMRQVLKTDRLVLEPQSMARFDQWFAMERQRDEAGHRDLTEDQ FT AWLRLCARQGMWDAYACGFYYLLDPVSGEMRGEAGFQFRRRGFGPGFDNHPEAAWAVAS FT AHQGRGLAAEAMQALLAHHDRSSGRQRVVALIARSNLPSLRLAERLGFRGYSDVAFDGA FT AHLLLERAG" FT misc_feature 890896..891156 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT CDS complement(891226..892002) FT /transl_table=11 FT /locus_tag="BP0859" FT /product="short-chain dehydrogenase" FT /note="Similar to Escherichia coli 7-alpha-hydroxysteroid FT dehydrogenase HdhA or HsdH or B1619 or X2624 or Ecs2327 FT SW:HDHA_ECOLI (P25529) (255 aa) fasta scores: E(): 4.6e-23, FT 36.800% id in 250 aa, and to Rhodopseudomonas palustris FT putative 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase FT BadH TR:O07457 (EMBL:U75363) (255 aa) fasta scores: E(): FT 3.9e-27, 41.569% id in 255 aa" FT /protein_id="CAE41162.1" FT /translation="MTPREQPRFRGKRALVTGAGAGIGRAIALALAKDGAHVCVLDADH FT AAADETAAMVRQLGAEAATIVHDMGCASVVASIASMQDGFGAFDLLVNNAGISPKQPDG FT RKRMIWETPPEEWQRVIQVNLCGYFFALRAVLPGMVERRAGAVVNIASLAGLRYSSIAG FT ASYATAKNAVVGLTRQAAGEVAEFGIRINCVAPGRIETAMASVAGGEFNETIRASTPLR FT RLGQPADIADAVLFLLSEQAGFITGETLPVTGGRGL" FT misc_feature complement(891238..891255) FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT misc_feature complement(891247..891339) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(891397..891969) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature complement(891460..891546) FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT misc_feature complement(891907..892002) FT /note="Signal peptide predicted for BP0859 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.924) with cleavage site FT probability 0.689 between residues 32 and 33" FT CDS complement(891999..893687) FT /transl_table=11 FT /locus_tag="BP0860" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme III large subunit IlvI or b0077 SW:ILVI_ECOLI FT (P00893) (574 aa) fasta scores: E(): 2e-18, 28.571% id in FT 532 aa, and to Rhizobium meliloti probable AtrC FT acetolactate syntase AtrC TR:AAK65177 (EMBL:AE007243) (570 FT aa) fasta scores: E(): 4.3e-100, 50.722% id in 554 aa" FT /protein_id="CAE41163.1" FT /translation="MLKAAGVAQIFGQSCPTALFLAADAIGIRQIGYRTENAGAAMADG FT AARVGRQLTVITAQNGPAAALLVAGFSEATKASVPILAIVQEVPRANADKNAFQELDHV FT QLFASCAKWVRRIDVAERAAEYTERAIRIATSGRPGPVVLLVSQDVLTTACPQARPVAQ FT DSDEPLGRFPLDRTVPVAGRLAQLAQRLLDAKRPLVVAGGGVHLSGACDALARLQSLAG FT LPVATTNMGKGAIDETHPLSLGVIGNAMGTRSPAKHFMDYVRSADFVLFVGTRTNENGT FT ASWSLFPEQAQYAQIDIDSEEVGRNYGAMRFAGDAAATLQALGDALQGRGQAVAARRMA FT ELAPAFEACRQAHRAELAPYAQSDASPMRPERIMAELRASHGDIIWVADASYSSIWLAQ FT FIPCTEAGTRFVTPRGIAGLGWGVPMAIGAKIARPGARVICLTGDGGFAHCWAELETAR FT RHEVPLTIVVLNNGVLGFQINAEESRFGTHTDVCHFGAIDHVAIAKACGCDGASVSDAA FT SLRQAMAAAERSPVPFVIDVKTEPSAFPPISAFESQLRPLGGETP" FT misc_feature complement(892077..893609) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT misc_feature complement(892350..892409) FT /note="ScanRegExp hit to PS00187, Thiamine pyrophosphate FT enzymes signature. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature complement(893643..893675) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(893849..894829) FT /transl_table=11 FT /locus_tag="BP0861" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 8.7e-43, 38.889% id in 324 aa, and to Agrobacterium FT tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) FT fasta scores: E(): 4.2e-49, 46.226% id in 318 aa" FT /protein_id="CAE41164.1" FT /translation="MLLHRVLISLATGVLTLGVLGAAHADAYPTKPIRLVVPYPPGGIT FT DIAARGLARAMSEELKQSVIVENRAGAGGIIGSDYVARAPADDYTLLIGTSATHGTNPS FT TYANLPYSATGSFEPIAAVASSPLLVVVNPSSPVRDVQGLIAHLKANPGKESYASTGTG FT GSLHLTLELFKLMTGTDIQHVPYKVSAPALTDLIGGHVQLMFDNMPSSLPQVKAGSLRA FT LAVTGPQRSALVPELPTVAEAVPGFASASWVALYAPKNTPAAIVQTLNAAANKGLKSQD FT VLAQFSAAGLEPTGGTSAALDSFMRAEIAKWAEVVKKINLPPSKL" FT misc_feature complement(894755..894829) FT /note="Signal peptide predicted for BP0861 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.971 between residues 25 and 26" FT CDS 894967..895884 FT /transl_table=11 FT /locus_tag="BP0862" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Salmonella typhimurium OsmT protein OsmT FT TR:CAC44465 (EMBL:AJ313506) (308 aa) fasta scores: E(): FT 1.3e-25, 34.354% id in 294 aa, and to Rhizobium meliloti FT putative transcriptional regulator protein smb20123 FT TR:CAC48523 (EMBL:AL603642) (298 aa) fasta scores: E(): FT 8.2e-30, 35.932% id in 295 aa" FT /protein_id="CAE41165.1" FT /translation="MNVTFRQLTAFIEVASSRSFSQAAQALHVTQPALTAMIQKLETQL FT GVVLFTRTRRGAELTTTGRELLPELQRILANLEVVIEDVRGAASPRGGTVTLACIPSLS FT NTWIPSLIARVEQAYPRIKVILKDAMTENRSIHEMLRTGDIDYGVGSPSVEQDGLEFDL FT LAHDELVAVVPQDHPLARRTLVRWSELAESPLIGMSYQSHVRMLVDEAFAANGISKRPK FT REVSLITTAIGMVRAGLGVSVLPTTAIEVCNVAGLKVLRLHAPRVRRPLGFLHLPTRSL FT SPAARLLLRFVKDAGPIPLGKQPE" FT misc_feature 894979..895413 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 895018..895083 FT /note="Predicted helix-turn-helix motif with score 1639 FT (+4.77 SD) at aa 18-39, sequence RSFSQAAQALHVTQPALTAMIQ" FT misc_feature 895021..895113 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(896013..896873) FT /transl_table=11 FT /gene="serB" FT /locus_tag="BP0863" FT /product="phosphoserine phosphatase" FT /EC_number="3.1.3.3" FT /note="Similar to Escherichia coli, and phosphoserine FT phosphatase SerB or B4388 or Z5989 or Ecs5346 SW:SERB_ECOLI FT (P06862) (322 aa) fasta scores: E(): 2.1e-28, 46.444% id in FT 239 aa, and to Neisseria meningitidis putative FT phosphoserine phosphatase SerB or nma1179 TR:Q9JUR1 FT (EMBL:AL162755) (277 aa) fasta scores: E(): 1.6e-31, FT 49.327% id in 223 aa" FT /protein_id="CAE41166.1" FT /translation="MTIHHLVIQSPALAAEHAEQLAALAQAQGVTRISTTAARLLDVQQ FT DGDTRAQVRHWAETHGVDAAFVPAGLALADCRILAMDMDSTLINIECIDEIATVAGVGA FT QVAQITEAAMRGEIKDFSESLRRRVALLAGAPAAALERVYAEKLRLNPGAERLLASVRA FT AGIQTLLVSGGFTFFTERLRERLGLDHAHANTLEVDADGKLTGRVLGDILDGDAKAAHL FT AALAQCLSARPEQIIAIGDGANDLKMLARAGFAVAYHAKPIVREQTPYALNVCGLDGVL FT NWFEK" FT misc_feature complement(896088..896648) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS complement(896909..900340) FT /transl_table=11 FT /gene="mfd" FT /locus_tag="BP0864" FT /product="transcription-repair coupling factor" FT /note="Similar to Escherichia coli transcription-repair FT coupling factor Mfd or B1114 SW:MFD_ECOLI (P30958) (1148 FT aa) fasta scores: E(): 6e-212, 51.619% id in 1143 aa, and FT to Pseudomonas aeruginosa transcription-repair coupling FT protein Mfd or Pa3002 TR:Q9HZK3 (EMBL:AE004725) (1148 aa) FT fasta scores: E(): 0, 54.440% id in 1126 aa" FT /protein_id="CAE41167.1" FT /translation="MPIPATATTLSALKPGARFTQPRPPGSGDGWLLADLARQAGKPLV FT VLTADPLEAQRLADEIPQFAPELRVRQLPDWETLPYDAFSPHQDLISQRLRTLHALMNQ FT GVDILTVPVTTALYRLAPPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSHVTQVTAPG FT EFCLRGGLIDLFPMGSVVPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQLLPGREFPM FT DEEARNRFRARFREVFEGDPSRALPYKDIGNGIAFAGIEYYLPLFFEQTATLFDYLAAD FT TITVTVGDIDDAMQRFAHDTRSRYDFLKVDRERPVLPPDTLFLDHEALFARLKDFPRLA FT LMAERPHPDFAAAPDVAVARRADDPVARLRALLAQTGDRVLLCADSAGRRETLAQMLGE FT HGLAPEAQADSIQAFLDDGARFGLAVAPLSAGFCVPGGALLFLTENDLYPGHAGVTRRG FT KRTQERTSNVEAMVRDLAELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYASG FT STLYVPVSQLHVIARYSGADPDAAPLHQLGSGQWDKARRKAARQVRDTAAELLALYAQR FT AAREGYAFKLPMSDYEAFAEGFGFEETPDQAAAIQAVIMDMTSGRPMDRLVCGDVGFGK FT TEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVA FT AAVEGINDGRVDIVIGTHKILSKDVRFKRLGLVIIDEEHRFGVRQKETLKALRAEVDVL FT TLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQ FT VYFLHNEVETIHNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRHNVLLCTTI FT IETGIDIPTANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKR FT LEAIQAMEELGSGFYLAMHDLEIRGTGEILGDSQSGNIQEVGFSMYNEMLNEAVRALKA FT GEEPDLDAPFNLACEVNLHAPALLPSDYCPDVHGRLAIYKRLSHADGEDDLIRIQEELI FT DRFGKLPEAAQTLLATHRLRLAAQPLGIVKIDASETQALLQFGAKTTVDPLRIIELVQR FT QRHIKLSGQDKLRVEIKAPQIAARADAVRAVLRALK" FT misc_feature complement(897617..897871) FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain" FT misc_feature complement(897977..898567) FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase" FT misc_feature complement(898433..898456) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 900394..901077 FT /transl_table=11 FT /gene="ispD" FT /locus_tag="BP0865" FT /product="4-diphosphocytidyl-2c-methyl-D-erythritol FT synthase" FT /EC_number="2.7.7.-" FT /note="Similar to Escherichia coli FT 4-diphosphocytidyl-2c-methyl-D-erythritol synthase IspD or FT B2747 SW:ISPD_ECOLI (Q46893) (235 aa) fasta scores: E(): FT 5.3e-27, 46.667% id in 225 aa, and to Pseudomonas FT aeruginosa 4-diphosphocytidyl-2c-methyl-D-erythritol FT synthase IspD or Pa3633 SW:ISPD_PSEAE (P57707) (234 aa) FT fasta scores: E(): 6.1e-27, 44.843% id in 223 aa" FT /protein_id="CAE41168.1" FT /translation="MSESLIAIVPAAGIGARASLPGEAAVPKQYRPLAGQPMLRHAVRA FT LLADPRIVQVRVAVSAGDGWVEQALAGLPRTVWRPCGGPNRADTVAAALADSGAAADDW FT ILVHDAARPGLPAAALARLIDACLDDAVGGLLALPVADTVKAGRQRVSRTVDRDGLWLA FT QTPQMFRAGLLRDALARARAAGLAVTDEASAVEAAGHAPRLVAGALRNFKVTWPDDFEL FT MEKWL" FT misc_feature 900394..900465 FT /note="Signal peptide predicted for BP0865 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.612) with cleavage site FT probability 0.529 between residues 24 and 25" FT misc_feature 900406..901068 FT /note="HMMPfam hit to PF01128, Uncharacterized protein FT family UPF0007" FT misc_feature 900706..900729 FT /note="ScanRegExp hit to PS01295, FT 4-diphosphocytidyl-2C-methyl-D-erythritol synthase FT signature." FT CDS 901074..901562 FT /transl_table=11 FT /gene="ispF" FT /gene_synonym="mecS" FT /locus_tag="BP0866" FT /product="2C-methyl-D-erythritol 2,4-cyclodiphosphate FT synthase" FT /note="Similar to Escherichia coli 2C-methyl-D-erythritol FT 2,4-cyclodiphosphate synthase IspF or MecS or B2746 or FT Z4054 or Ecs3600 SW:ISPF_ECOLI (P36663) (159 aa) fasta FT scores: E(): 1.5e-28, 58.333% id in 156 aa, and to FT Neisseria meningitidis 2C-methyl-D-erythritol FT 2,4-cyclodiphosphate synthase IspF or Nmb1512 SW:ISPF_NEIMB FT (Q9JYM5) (160 aa) fasta scores: E(): 1.1e-35, 67.742% id in FT 155 aa" FT /protein_id="CAE41169.1" FT /translation="MNIPFRVGQGFDVHALVEGRPLIIGGVTIAHTHGLLGHSDADVLL FT HAVTDALLGGAGLGDIGRHFPDTDPAYRGADSRVLLRAAFDKVRAAGWAPVNVDATIHA FT QAPKIGPHAAAMVANIAADLALDAGAVNIKAKTNEGLGYLGRKEGIAANVVVLLARAG" FT misc_feature 901086..901556 FT /note="HMMPfam hit to PF02542, YgbB family" FT misc_feature 901188..901235 FT /note="ScanRegExp hit to PS01350, 2C-methyl-D-erythritol FT 2,4-cyclodiphosphate synthase signature." FT repeat_region 901559..901590 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 901559..902611 FT CDS 901661..902611 FT /transl_table=11 FT /locus_tag="BP0867" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41170.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 901919..901984 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 902042..902575 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(902580..902611) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(902608..903627) FT /transl_table=11 FT /gene="fbp" FT /gene_synonym="fdp" FT /locus_tag="BP0868" FT /product="fructose-1,6-bisphosphatase" FT /EC_number="3.1.3.11" FT /note="Similar to Escherichia coli FT fructose-1,6-bisphosphatase Fbp or Fdp or B4232 FT SW:F16P_ECOLI (P09200) (332 aa) fasta scores: E(): 3.1e-49, FT 47.273% id in 330 aa, and to Pseudomonas aeruginosa FT fructose-1,6-bisphosphatase Fbp or Pa5110 TR:Q9HU73 FT (EMBL:AE004923) (336 aa) fasta scores: E(): 2.6e-97, FT 73.591% id in 337 aa" FT /protein_id="CAE41171.1" FT /translation="MKRKTLTQYLVEQQRSAQALGPEVRLLIEVVARACKAISHAVSKG FT ALGGVLGSLESENVQGEVQKKLDVLSNEILLEANEWGGHLAAMASEEMETIHLIPNRYP FT KGEYLLLFDPLDGSSNIDVNVSIGTIFSVLRAPHRVAGADVCEQDFLQPGSQQVAAGYA FT VYGPQTMLVLTIGNGVVGFTLDREMGSWVLTHESMRIPEDTKEFAINMSNMRHWAPPVK FT RYIDECLAGKTGPLGKDYNMRWIASMVADVHRILTRGGIFMYPWDAREPGKAGKLRLMY FT EANPMGLIVEQAGGAAIDGTGRILDIQPDKLHQRVSVILGSKNEVERVGRYHAEAHAS" FT misc_feature complement(902650..903447) FT /note="HMMPfam hit to PF00316, Fructose-1-6-bisphosphatase" FT CDS complement(903637..906345) FT /transl_table=11 FT /gene="pepN" FT /locus_tag="BP0869" FT /product="aminopeptidase N" FT /EC_number="3.4.11.2" FT /note="Similar to Escherichia coli aminopeptidase N PepN or FT B0932 SW:AMPN_ECOLI (P04825) (869 aa) fasta scores: E(): FT 1.6e-65, 47.052% id in 899 aa, and to Caulobacter FT crescentus aminopeptidase N PepN or Cc2481 SW:AMPN_CAUCR FT (P37893) (863 aa) fasta scores: E(): 1.3e-70, 48.946% id in FT 901 aa" FT /protein_id="CAE41172.1" FT /translation="MRTDTPVTVYRKDYQPYPYTIADVALEFDLDPASTTVRCLMQVAR FT KADARDDAPLVLDGEALELVSIRVDGRDWARDGYVLDDATLTLRGLPPSAAVEIVSRCR FT PAANSTLMGLYVSGGNFFTQCEAEGFRRIAWFADRPDVMSRYRVTLRAAPDYPVLLSNG FT NLLATATLPDGRLQAEWEDPFPKPSYLFALVAGRLTHREERVRTQSGRDVLLQVYSDPG FT SENRTEWALESLRHALRWDESRFGLELDLDRFMVVAVRDFNMGAMENKGLNIFNAAYVL FT ADPATATDANYEGIESVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMMA FT RGLDEQAAASARAVKRIDDVVTLRAAQFPEDAGPMAHPIRPDSYQEIGNFYTATVYEKG FT AEVIRMQHTLLGEPGFRAGMDEYFRRHDGQAVTCDDFVAAMESVYAARNPGRDLSVFRR FT WYSQAGTPRVSVKLDHDAQSGRCTVTLTQRCAPVGVEKRAGRDFAKQAFHIPFAIGLLD FT AQGRALPLHLNGQPARDTVLLELTEARASWTFEQVPDMPVPSLLRGFSAPVIVEYDWSD FT ADLALLSAHDTDPFARWEAGQELATREILALTASHQAGQPLAVRPAFIAAWRALLTDPT FT LDAAYRARALALPSEKTLAERMEQIDPPALAVARDFLRAEVGRQLAAPWRAAFDANQTP FT GAYSPAAGPAGRRALKNQALSHLMAAESADAQALAQAQYDQADNMTDSMAALSALVNFG FT APDSAAAALAAFYERWRDDPLVVDKWFTLQATARSTDIDAVRALMAHPAFTLRNPNRAR FT ALVFQFCLNNARGMHRADGRGYDFWAEQVLALDALNPEIAARLARGLDNWARFAEPLRG FT AMQAALAHVRAHAGLSRNVQEIVSKALDLAA" FT misc_feature complement(905149..905280) FT /note="HMMPfam hit to PF01433, Peptidase family M1" FT misc_feature complement(905344..906003) FT /note="HMMPfam hit to PF01433, Peptidase family M1" FT misc_feature complement(905425..905454) FT /note="ScanRegExp hit to PS00142, Neutral zinc FT metallopeptidases, zinc-binding region signature." FT misc_feature complement(905569..905610) FT /note="ScanRegExp hit to PS01039, Bacterial extracellular FT solute-binding proteins, family 3 signature." FT CDS 906493..907149 FT /transl_table=11 FT /locus_tag="BP0870" FT /product="putative exported protein" FT /note="Similar to Zymomonas mobilis hypothetical 23.9 kDa FT protein TR:Q9EZA0 (EMBL:AF300471) (220 aa) fasta scores: FT E(): 0.00027, 33.333% id in 207 aa" FT /protein_id="CAE41173.1" FT /translation="MFSIHAYSRLARLAGLAGLAGLAALLAGAALVAGCAAPSVSARVT FT SFQQWPDGVAGQTYQFAPESGQLNNLEYQSYQDMVRAGIGATGLVEAREGRKARFTVSF FT RYGSAQTQVMVRRAYDPYFYGGYGGYYGPRWWGGGVGYWGPEWVDVPTVAYRNSLSLEI FT RDTARGGAEVYRSTAYITSGRDDLLGAMPYLVQAIFDNFPGNNGSEREIEYPLAR" FT misc_feature 906493..906618 FT /note="Signal peptide predicted for BP0870 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.582 between residues 42 and 43" FT repeat_region 907146..907177 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 907146..908198 FT CDS 907248..908198 FT /transl_table=11 FT /locus_tag="BP0871" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41174.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 907506..907571 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 907629..908162 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(908167..908198) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(908195..910027) FT /transl_table=11 FT /locus_tag="BP0872" FT /product="ABC transporter, ATP-binding protein" FT /note="Similar to Rhizobium loti ATP-binding protein of ABC FT transporter Mll0815 TR:Q98LY9 (EMBL:AP002995) (601 aa) FT fasta scores: E(): 3.1e-156, 74.624% id in 599 aa, and to FT Agrobacterium tumefaciens Agr_l_309p TR:AAK88722 FT (EMBL:AE008213) (600 aa) fasta scores: E(): 4.1e-147, FT 68.781% id in 599 aa" FT /protein_id="CAE41175.1" FT /translation="MARNKLDLRGSAFKAVLGFTFRHWARQPWRIGLIAMLALLSALAD FT ILTPLYVGRLIDAVAGGAPADTVARNAALGAFWLLIALGVGATLLRQAIFMNIIALTLK FT MMHDIVGLAFHQVQRLSSDWHANTFAGSTVRKITRGMWALDLLNDTLLIALLPSLAMLA FT GATALLGWHWPLMGLVVGLGSLLYVAVTMALSLDYVAPAARLGNAWDTRMGGALADAVS FT CNAVVKAFGAEWREEARLARVTDKWRHRTRRGWVRGTINGGVQGAMLVAMQAAILGVAL FT LLWQRGQASVGDVTFAFTTFFMLQGYLRDVGMNIRNLQRSINDMEELVSLQRQPLDVED FT LPGAGPIDIGAGEIRFENVTFRYGPHEQPLYRDFSVRIAPGERVGLVGHSGSGKTTFIK FT LIQRLYDVDGGRITIDGQDIAAVRQASLRSQIAIVQQDPVLFHRSLAENIAYGRPGATQ FT AEIERAARLASAHDFIMALPKGYDTLVGERGVKLSGGERQRVAIARAFLADAPILILDE FT ATSSLDSESEVLIQRAMERLMEGRTTLVVAHRLSTVRALDRLLVMDRGRVIEEGSHEAL FT IRLHGGVYRRLFERQALELTRGLSQWELGGAAAS" FT misc_feature complement(908333..908887) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(908510..908554) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(908843..908866) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(909104..909937) FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region." FT misc_feature complement(join(909176..909241,909428..909493, FT 909509..909574,909743..909808,909869..909934)) FT /note="5 probable transmembrane helices predicted for FT BP0872 by TMHMM2.0 at aa 37-59, 79-101, 157-179, 184-206 FT and 268-290" FT CDS 910426..911085 FT /transl_table=11 FT /gene="tpm" FT /locus_tag="BP0873" FT /product="thiopurine S-methyltransferase" FT /EC_number="2.1.1.67" FT /note="Similar to Pseudomonas syringae thiopurine FT S-methyltransferase Tpm SW:TPMT_PSESJ (O86262) (218 aa) FT fasta scores: E(): 1.1e-35, 44.495% id in 218 aa, and to FT Pseudomonas aeruginosa thiopurine methyltransferase Tpm or FT Pa2832 TR:Q9I011 (EMBL:AE004710) (218 aa) fasta scores: FT E(): 1.5e-37, 49.309% id in 217 aa" FT /protein_id="CAE41176.1" FT /translation="MDADFWLDRWREGRTHFHQTRVTPLLQKYWPTLDVPAGGQVLVPL FT AGKSLDMVWLAGQGLRVLGVELSQLAVEQFFDENDLRPEIHQSAQGRHYVAGNLELICG FT DVFALEDATLAACAGVYDRAALVALPEPMRKRYAREVYGRLGRGCRGILITLDYPQDQM FT EGPPFSVDDAEVQALYAGHTEARLIDRRDILDKEPKFNQRGVARLDTLVYRLERLG" FT CDS 911173..911325 FT /transl_table=11 FT /gene="vir-18" FT /locus_tag="BP0874" FT /product="vir-repressed protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis vir-repressed protein Vir-18 TR:Q04274 FT (EMBL:M37228) (23 aa) fasta scores: E(): 0.0007, 100.000% FT id in 23 aa" FT /protein_id="CAE41177.1" FT /translation="MGMKSILGLLLAAALLGGCAVYTPHGAAVVDPPDRGGGFCPPGQA FT KKGNC" FT misc_feature 911191..911259 FT /note="1 probable transmembrane helix predicted for BP0874 FT by TMHMM2.0 at aa 30-52" FT misc_feature 911197..911229 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 911434..911601 FT /transl_table=11 FT /locus_tag="BP0875" FT /product="putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE41178.1" FT /translation="MKFCMATLMLAASLALAGCAGGQGSQPGPPHPGAVNPYSSGGFHD FT AGPDYPDTGR" FT misc_feature 911434..911499 FT /note="Signal peptide predicted for BP0875 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.610 between residues 22 and 23" FT misc_feature 911458..911490 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(911613..912293) FT /transl_table=11 FT /locus_tag="BP0876" FT /product="putative lipoprotein" FT /note="Similar to Escherichia coli hypothetical lipoprotein FT YdcL precursor YdcL or B1431 or Z2287 or Ecs2036 FT SW:YDCL_ECOLI (P76101) (222 aa) fasta scores: E(): 4.1e-13, FT 30.942% id in 223 aa, and to Rhizobium meliloti putative FT polysaccharide export system periplasmic transmembrane FT protein Smc01794 TR:CAC45812 (EMBL:AL591786) (191 aa) fasta FT scores: E(): 2.1, 28.161% id in 174 aa" FT /protein_id="CAE41179.1" FT /translation="MKSSLYRIAALSAAALLLAGCANQRAPKESGFLGDYSQLREEQVP FT GGARLIYRDAALKPRQYTAMWLSPVEYYPSPQPSAQVSMETLTELQNYLDQSLRRKIGR FT EIRLVNGPGPGVAKARIAITAVGSESEALAAYQYIPVALAVTGARAVLEGGRPQQATIA FT IESKVTDSQTGQLLWASVRGGTGERVRAIAQGQASVPASALKPLIDEWTDNVAREIRNY FT VRSK" FT misc_feature complement(912222..912293) FT /note="Signal peptide predicted for BP0876 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.596 between residues 24 and 25" FT misc_feature complement(912231..912263) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 912575..913291 FT /transl_table=11 FT /locus_tag="BP0877" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3353 TR:Q9HYP3 (EMBL:AE004757) (263 aa) fasta FT scores: E(): 0.00072, 27.426% id in 237 aa" FT /protein_id="CAE41180.1" FT /translation="MPDAHDPYLVSGRFEIANLLQTLQARQCLLLMRIPGRPFNSVTSV FT LHVDAQAGQVVLDAAQDDTLNQRLADVGDVAFDTSLDNISISFAAARVARCEFEARPAL FT LVDLPETLTRVQRRDTFRIAVPVAQPATWVREAGGAEPLALCDISPGGLALADPLQTLD FT PAPGKIYRGVLALPELGAFAAAIRVVHHLDEVLAKGKTSRRIGCAFVELDKGTGIRIQA FT YVNALQRDQIARQRGL" FT CDS complement(913306..914607) FT /transl_table=11 FT /locus_tag="BP0878" FT /product="putative phospholipase" FT /note="Similar to Campylobacter coli phospholipase A PldA FT TR:O32349 (EMBL:Y11031) (297 aa) fasta scores: E(): FT 1.3e-09, 27.170% id in 265 aa, and to Campylobacter jejuni FT phospholipase A PldA or Cj1351 TR:Q9PMU8 (EMBL:AL139078) FT (329 aa) fasta scores: E(): 2.8e-09, 26.459% id in 257 aa" FT /protein_id="CAE41181.1" FT /translation="MQVPDPRSPFIRPALAGALALALAGMSLPALAGISYRLDRPAAAP FT GETVRLEAVFFNDGSASAAWNAPQQLVLQWRGADDQTIRSLAQRPAGEAALNIPVNNFA FT RMSWDAVVPVHARGLQAVSIEGESTMLALDATGREQDTLASTPADVPVTDARTGQPLPP FT AAVTAAGVSPDSGPAPAQVAVSQTFQPASAFDVFRSAISEYQPMYFDIGTREQTTARFQ FT ISAKYRLFSPKGDRPATFGENFYLGYTQTSLWDLEGDSKPFIDTTFNPSAFWLSDNIWS FT SASQNWRVGLNTGVEHQSNGKSGNDSRSLNDAYVQPALNYRFDSGSTLTFAPKVKTYFG FT VARENLDYADYAGYVDWNLRWAQDGGAVVSAMYRQGASSRRTTQLDFAWPLKRTWLDMN FT GYLHLQYFNGYGETLLGYNQRHDSQFRIGLSLVP" FT misc_feature complement(914512..914607) FT /note="Signal peptide predicted for BP0878 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 32 and 33" FT CDS complement(join(914742..915581,915585..915764, FT 915767..916234)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0879" FT /product="probable aldehyde dehydrogenase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 156 (the frameshift occurs within FT a polymeric tract of (G)4), and an in-frame TAG stop codon FT following codon 216. The sequence has been checked and FT believed to be correct. Similar to Streptomyces FT clavuligerus semialdehyde dehydrogenase Pcd TR:O85725 FT (EMBL:AF073895) (512 aa) fasta scores: E(): 1.9e-112, FT 62.955% id in 494 aa, and to Pseudomonas aeruginosa FT probable aldehyde dehydrogenase Pa1027 TR:Q9I4U7 FT (EMBL:AE004535) (529 aa) fasta scores: E(): 1.6e-130, FT 72.819% id in 493 aa" FT /db_xref="PSEUDO:CAE41182.1" FT misc_feature complement(join(914787..915581,915585..915764, FT 915767..916189)) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature complement(915453..915476) FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT variation complement(915582..915584) FT /note="TAG stop codon in pertussis; GAG in parapertussis FT and bronchiseptica" FT variation complement(915764..915767) FT /note="(G)4 in pertussis; (G)2 in parapertussis and FT bronchiseptica" FT tRNA 916416..916492 FT /note="tRNA Arg anticodon TCT, Cove score 90.16" FT CDS join(916776..919031,919040..919648) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0880" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 752. The frameshift occurs within FT a polymeric tract of (GCGCCGGC)3. The sequence has been FT checked and believed to be correct. Similar to Vibrio FT cholerae chemotactic transducer-related protein Vca0895 FT TR:Q9KL53 (EMBL:AE004417) (981 aa) fasta scores: E(): FT 6.7e-71, 32.070% id in 976 aa" FT /db_xref="PSEUDO:CAE41183.1" FT misc_feature 916776..916862 FT /note="Signal peptide predicted for BP0880 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.297 between residues 29 and 30" FT variation 919015..919038 FT /note="(GCGCCGGC)3 in pertussis;(GCGCCGGC)2 in FT parapertussis and bronchiseptica" FT CDS 919872..921224 FT /transl_table=11 FT /locus_tag="BP0882" FT /product="conserved hypothetical protein" FT /note="Similar to Methanothermobacter thermautotrophicus FT conserved protein Mth965 TR:O27046 (EMBL:AE000870) (452 aa) FT fasta scores: E(): 2.8e-21, 27.912% id in 455 aa, and to FT Agrobacterium tumefaciens Agr_l_2924p TR:AAK90029 FT (EMBL:AE008346) (448 aa) fasta scores: E(): 2e-24, 29.899% FT id in 398 aa" FT /protein_id="CAE41184.1" FT /translation="MNITQEIAKRVVQTSIRDLPADAVGYSETLAMSALGAMAAGHRSA FT GGREIVDYVKSAGGAAQATVLGHGLKTSMEMAGLANGTFAHATEYEDDSFPEAVSSYTL FT FPAIFAVAEHAQASGARVVEAFAAGYEAQARIGLACRQARRNGFMVLSLAGSIGCAASA FT AKLLGLDERQTTMALSLAASQGAGIGYQTGSMAHIVEMGFAARNGIAAALMAAQGMTGQ FT PDVLEAPRGLMNMITGDQVEAPAAIIEHWGRPYRLMEIGIKSYPCCYHLQRIIETTVDL FT RHAEGLAAADIEEISVEVNAFFPTVVQHMEPHDEIEAQFSLPHVLAIAMLEDQVVPAGF FT SQARIDDAAFQAFRRKVRQVVREDWGWTPTGWTPRITYRLADGRVIVREPEQARGQPPA FT LLTFDQCVPKYLGCVQGIYPEQQVERSIALLRGLAGLDSVAELMRCLATPA" FT CDS 921253..921774 FT /transl_table=11 FT /locus_tag="BP0883" FT /product="biotin carboxyl carrier protein" FT /note="Similar to Glycine max acetyl-CoA carboxylase AccB-1 FT TR:AAF80463 (EMBL:AF162283) (262 aa) fasta scores: E(): FT 1.8e-07, 33.939% id in 165 aa, and to Synechococcus sp FT biotin carboxyl carrier protein accB TR:Q54761 FT (EMBL:U59235) (158 aa) fasta scores: E(): 5.9e-12, 41.358% FT id in 162 aa. Also similar to BP2997, 41.333% identity FT (44.928% ungapped) in 150 aa overlap." FT /protein_id="CAE41185.1" FT /translation="MLVVKTKFSDLTHEDIDRILEIVNRVDDIDLQIQVDGLGLRVRKG FT NVGAPVAPPAVSAPAAAEAPAPAPSPAPAAQPAAAPAAAPAAPAAARQDLLSITAPMIG FT RFYAKPSPNDPAFVALGSQVGPDDSVCILEVMKLFNTVKAGVAGEIVEILVQEGDMVEE FT GDVLFRVKPQ" FT misc_feature 921538..921762 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme" FT CDS 921771..923225 FT /transl_table=11 FT /locus_tag="BP0884" FT /product="probable carboxylase" FT /note="Similar to Methanococcus jannaschii pyruvate FT carboxylase subunit B PycB or Mj1231 SW:PYCB_METJA (Q58628) FT (567 aa) fasta scores: E(): 5.8e-52, 35.685% id in 482 aa, FT and to Pyrococcus horikoshii 571aa long hypothetical FT oxaloacetate decarboxylase alpha chain ph0834 TR:O58564 FT (EMBL:AP000003) (571 aa) fasta scores: E(): 3.8e-49, FT 38.073% id in 436 aa" FT /protein_id="CAE41186.1" FT /translation="MSRRIGIIDTTLRDAQQCLWATRMTAGMMDPIAQALDEAGFDMID FT FMAPVQFDVCVRYLREDPFEKARHFRKRFRNTPMRSYCRSKSLVGFSMVPDDMVELWID FT CLAANGFSAVGTLDSLLDVDNMKVSVRRAKKIGIKSIGALVFCESPLHTDALYAGTAAE FT LVRCGVDGIMLKDSGALLTIERIRTLIPALRAAVGDIPIEVHSHSNTGLVQRVYLDAAD FT LGIDQLHTSIAPLAGGVAQPSIQNMTRNLAQRGYRTDVDMARVEEISAYLHRLAARYDF FT PLGKPMEYDEFHYRHQMPGGMTENWRFQLRQAGLENRFEEILEEIGRVREDLAWPIMVT FT PFSQIIGVQAMLNVVNGERYRAVPDEVKMYALGHFGRLLGPVEPNALDRIVANGSPDVG FT LTPQPKDPALPGLRKANPGMTDEELLLRYMFPADDVEATLGCKPLKLTVPAGGPIVRLI FT EEILPRAGIRHFELRSQSEHISFTRP" FT misc_feature 921801..922622 FT /note="HMMPfam hit to PF00682, HMGL-like" FT misc_feature 922308..922337 FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT misc_feature 922650..923174 FT /note="HMMPfam hit to PF02436, Conserved carboxylase FT domain" FT CDS 923242..923508 FT /transl_table=11 FT /locus_tag="BP0885" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr4612 protein Mlr4612 FT TR:Q98DP4 (EMBL:AP003004) (122 aa) fasta scores: E(): 3, FT 29.487% id in 78 aa" FT /protein_id="CAE41187.1" FT /translation="MPRRIRMTQPAASSHAVIVMYDAPAELDAWMHGDHYREVLATPGV FT TGVRRYEVLDGPQACRKYLAVIETDDLDATLAWRDSEAGARSQ" FT CDS 923680..924489 FT /transl_table=11 FT /locus_tag="BP0886" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium tuberculosis CDC1551 FT conserved hypothetical protein Mt2360 TR:AAK46645 FT (EMBL:AE007078) (307 aa) fasta scores: E(): 2e-09, 25.498% FT id in 251 aa, and to Agrobacterium tumefaciens Agr_c_2623p FT TR:AAK87214 (EMBL:AE008068) (291 aa) fasta scores: E(): FT 6e-07, 24.413% id in 213 aa" FT /protein_id="CAE41188.1" FT /translation="MFRTAMHYPRHNLTFKGARSAWLEDVGLLFEEMDSAGIRYGVAMG FT RASSGAGNLGGVANQDIVDLLATYPDRFLGFLGVDLDNIAGSLAEIRELAGAPGVKEIS FT IEPGSARVPRWSDDKTLDPVYELALELKLPVSISLSGLLSALAGHDITWSSPVSIQRVA FT QRYRDLKIVVSHAAWPYADEMVVVALACPNIYVSPDLYASTRGMICADSYVKGANMFLE FT DRTLFGTAYPVKDIQDSLRDFLQLGWREDIIHKVLWTNAARLLGVDK" FT CDS 924515..925570 FT /transl_table=11 FT /locus_tag="BP0887" FT /product="conserved hypothetical protein" FT /note="Similar to Arabidopsis thaliana induced upon FT wounding stress TR:Q39171 (EMBL:X99793) (386 aa) fasta FT scores: E(): 9.1e-20, 30.458% id in 371 aa, and to FT Arabidopsis thaliana hypothetical 44.2 kDa protein T22a6.50 FT or At4g24220 TR:Q9STX2 (EMBL:AL078637) (388 aa) fasta FT scores: E(): 6.2e-26, 31.892% id in 370 aa" FT /protein_id="CAE41189.1" FT /translation="MKRTALIAGPYGIVGNALVQHLARDAAWDVVTISRRQEAALPGVR FT HIAADLLDAAQAEAALAAFPGITHVFYCAYAPRPTLGEEAAPNLAMLANLVSAVDRHAR FT GLERVVLVHGTKWYGNHLGPFRTPAREDDARHCPPNFYYDQQDWIAARQRESGRWSWTA FT FRPHGIFGYALGSPMNHLMALSLYASVMKAVATPLKFPGTPAAFAALNQCTDARLLARA FT MAWSVDVAACENEAFNFHNGEPERWANLWPAVAEAFGMQAGGVQQIRLAAMMPANEAAW FT QAICQRQGLRHFPLEAYVNWSFADWVYSNGFDQVCSLYKLRRAGWTEILLFDDMLKSML FT SDLRQRKLLPA" FT CDS 925583..926374 FT /transl_table=11 FT /locus_tag="BP0888" FT /product="GntR-family transcriptional regulator" FT /note="Similar to Bacillus subtilis hypothetical FT transcriptional regulator YurK SW:YURK_BACSU (O32152) (242 FT aa) fasta scores: E(): 2.1e-15, 30.472% id in 233 aa, and FT to Deinococcus radiodurans transcriptional regulator, GntR FT family dra0211 TR:Q9RYU6 (EMBL:AE001863) (279 aa) fasta FT scores: E(): 3.7e-12, 29.046% id in 241 aa" FT /protein_id="CAE41190.1" FT /translation="MAQMKDNNVSNRATLVLYENRSIPLYRMIKEELIRFVQKKGIKSG FT MALPGDNELASQFGVSVGTVRRAIAELVSERIVIRQQGRGTFLAPYDTSRMLNSFWHIE FT RRDGVVDVPLVSTHGFSQASATEEVAQKLALQPGDPVFVIKNSMTMQGTPVLLDTIYVP FT VRTFEGLTREKLSARDATIYDFYREQYGINIVKTIDRVSATVADKDTAKRLGCKLGASM FT LRILRVAYSFGDTPIEYRCSLLDSENHEYVDVTGGDTSRYG" FT misc_feature 925667..925846 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature 925727..925792 FT /note="Predicted helix-turn-helix motif with score 1399 FT (+3.95 SD) at aa 49-70, sequence PGDNELASQFGVSVGTVRRAIA" FT CDS 926407..927777 FT /transl_table=11 FT /gene="accC" FT /gene_synonym="fabG" FT /locus_tag="BP0889" FT /product="biotin carboxylase" FT /EC_number="6.3.4.14" FT /note="Similar to Escherichia coli biotin carboxylase AccC FT or FabG or B3256 SW:ACCC_ECOLI (P24182) (449 aa) fasta FT scores: E(): 9.6e-86, 54.018% id in 448 aa, and to Anabaena FT sp biotin carboxylase AccC SW:ACCC_ANASP (Q06862) (447 aa) FT fasta scores: E(): 5.9e-93, 56.629% id in 445 aa" FT /protein_id="CAE41191.1" FT /translation="MKLKKVLIANRGEIALRIIRACREMDIRTVQVYSSADEDSLPVRL FT ADEAAPIGGPEPSASYLNIAALIAAAREHGCDAIHPGYGFLSENEDFAQACIDAGIVFI FT GPDPGAIRMMGDKAQARKIAKEAGVPIVPGSPEPVSDVEEAIRVAREVGYPLLVKAAAG FT GGGRGMRVIQGEAQLREGLERASMEAKSAFGDGSVYIERYISPVRHVEIQVFGDGEDVI FT HLGERECSIQRRHQKLLEESPSPVLSDETRQRMGEAACALARAVKYRGAGTLEFVMDGK FT SGEFFFIEMNTRIQVEHPVTETVTGVDLVRLQLAVAAGGRLGLRQQDIVMKGHAIECRI FT NAEDPQKAFMPSPGTVNDIRLPSGPGVRMDSHVYRGYKLPPYYDSLLGKLIVWDESREK FT AIARMLRALGELEIVGVKTTKEFHERLMRDEDFIAGNVSTQFVKEKLYADHPMCHLL" FT misc_feature 926419..927522 FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain" FT misc_feature 926866..926910 FT /note="ScanRegExp hit to PS00866, Carbamoyl-phosphate FT synthase subdomain signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 927265..927288 FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT misc_feature 927763..927774 FT /note="ScanRegExp hit to PS00294, Prenyl group binding site FT (CAAX box)." FT CDS 927793..928872 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0890" FT /product="putative acyl-CoA carboxylase (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Saccharopolyspora erythraea FT propionyl-CoA carboxylase beta chain PccB SW:PCCB_SACER FT (P53003) (546 aa) fasta scores: E(): 4.3e-33, 34.146% id in FT 369 aa, and to Pyrococcus horikoshii 522aa long FT hypothetical methylmalonyl-CoA decarboxylase alpha chain FT Ph1287 TR:O59018 (EMBL:AP000005) (522 aa) fasta scores: FT E(): 4e-42, 38.108% id in 370 aa" FT /db_xref="PSEUDO:CAE41192.1" FT misc_feature 927832..928860 FT /note="HMMPfam hit to PF01039, Carboxyl transferase domain" FT repeat_region 928852..928883 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 928852..929485 FT CDS 928954..929904 FT /transl_table=11 FT /locus_tag="BP0891" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41193.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKRRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 929212..929277 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 929335..929868 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region 929483..929904 FT repeat_region complement(929873..929904) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 929957..930178 FT /transl_table=11 FT /locus_tag="BP0892" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE41194.1" FT /translation="MGDVMQRGELAYWLNVVVENGEPGAPQIPVPEQFVTALTTLRCIE FT RNAQGQLVVTEKGRLALHMEEPGALHRQ" FT CDS 930338..930550 FT /transl_table=11 FT /locus_tag="BP0893" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE41195.1" FT /translation="MQHRDQEVLIDVSTAAMDTGGYGVLLTVTAEGGTEVDAAFSYLGT FT CASLDEARDRAEAFAQDWLRENIYR" FT CDS 930649..931788 FT /transl_table=11 FT /gene="pmi" FT /locus_tag="BP0894" FT /product="putative mannose-6-phosphate isomerase" FT /EC_number="5.3.1.8" FT /note="Similar to Rhizobium meliloti mannose-6-phosphate FT isomerase Pmi or R02982 or Smc03111 SW:MANA_RHIME (P29954) FT (387 aa) fasta scores: E(): 4.5, 27.763% id in 389 aa, and FT to Caulobacter crescentus mannose-6-phosphate isomerase FT Cc3617 TR:Q9A2E8 (EMBL:AE006020) (386 aa) fasta scores: FT E(): 1.3e-13, 32.031% id in 384 aa" FT /protein_id="CAE41196.1" FT /translation="MHARRTPMSAASFHTDLPALVAQLRQHFNTVIVPLWLERGFDAGL FT GLPCEALDAHGAPLPAQRYRAMACARQLYVFSRTDGAAAAAHAERLFSSLLRYFQNAAH FT GGWRHSVDAQGQPLDDTQDLYTHAFVVFACAAYFARTRDARARKTLLATVDVIEQRFRT FT RQGLYVAALSADWAQVVRGPAQNPVMHLTEAYLAAAGVVEPAWFAQTLGRLTQDVASTF FT LYAPRLCIAEEPLDQPPRFEPGHQFEWYSLLHGAPDLFGDLELGSALQRGCAWVRQHGV FT DAHSHGVAAVLDESGAVRDATQRIWAQTEYARYLALSGQWPELATQLRAFQARFLHQDG FT WHECLDAQGNVSRADMPSTTPYHLATCYAALEDALAGQG" FT CDS 931885..932100 FT /transl_table=11 FT /locus_tag="BP0895" FT /product="conserved hypothetical protein" FT /note="Similar to Halobacterium sp 50S ribosomal protein FT l44E Rpl44e or Vng0551G TR:Q9HRT6 (EMBL:AE005006) (61 aa) FT fasta scores: E(): 8.8, 39.024% id in 41 aa" FT /protein_id="CAE41197.1" FT /translation="MSVMCPACQAINAGSSGVEPHPRLGHQGFTNPSQKGREANREDHF FT RCIECGAKWLRETDRWGVDLGFRLAP" FT CDS 932294..932545 FT /transl_table=11 FT /locus_tag="BP0896" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE41198.1" FT /translation="MVQKVLNGFAVVAFATQPEHGMPPRAFIQTAPMDGAGQAEPQVFE FT IFLARRFRSAVEAMSAARNALDRVVSVDQDGVPAPLPD" FT repeat_region 932555..932586 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 932555..932632 FT repeat_region 932628..933608 FT CDS 932658..933608 FT /transl_table=11 FT /locus_tag="BP0897" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41199.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWTYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 932916..932981 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 933039..933572 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(933577..933608) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(933605..933988) FT /transl_table=11 FT /locus_tag="BP0898" FT /product="putative ferredoxin" FT /note="Similar to Pseudomonas spCA10 ferredoxin component FT of carbazole 1,9a-dioxygenase CaraC TR:O32475 (EMBL:D89064) FT (107 aa) fasta scores: E(): 0.16, 28.736% id in 87 aa, and FT to Pseudomonas aeruginosa hypothetical protein Pa4711 FT TR:Q9HV87 (EMBL:AE004885) (115 aa) fasta scores: E(): FT 3.9e-10, 35.965% id in 114 aa" FT /protein_id="CAE41200.1" FT /translation="MTDSTPAVRVCAAADLVDGGLGVKVPVTDGAGQASAFFVRYRGQV FT YGYLNRCAHVGVELDWENSFFTRAGDLIMCARHGATYEPDTGLCIGGPCRNGRLTALQV FT DERPDAGGMAVYWLPSGKIQPRG" FT misc_feature complement(933707..933901) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain" FT CDS complement(934043..935860) FT /transl_table=11 FT /locus_tag="BP0899" FT /product="ABC transporter, ATP-binding protein" FT /note="Similar to Rhizobium loti ABC transporter, FT ATP-binding protein Mlr7818 TR:Q984W3 (EMBL:AP003012) (627 FT aa) fasta scores: E(): 1.9e-115, 56.324% id in 593 aa, and FT to Rhizobium meliloti probable ABC transporter ATP-binding FT transmembrane protein Smc00550 TR:CAC45699 (EMBL:AL591786) FT (627 aa) fasta scores: E(): 5.7e-117, 57.022% id in 591 aa" FT /protein_id="CAE41201.1" FT /translation="MMPSPSPTPAGRNSLDTLRTLAPFLWPADRPGLKARVVIAILCLL FT AAKAAVVYVPILYKSAVDQLGGGAPGAVTVPLGLILAYGAARVLSLLFSELRDAVFARV FT GQHAIRAVGLQIFLHLHALALRFHLARQTGGLTRAIERGTKGIQTLLTFLLFNVLPTLF FT EIGLVCAVLWKMFDGWLALATGATVTLYLAYTLVVTEWRTRFRRQMNETDSEANTKAVE FT SLLNYETVKYFGNEEHEAQRYDASLRRYERAAVRSQVSLSILNIGQAVIISAGLTLVMW FT MAARGIAQGRYTLGDFVLVNTYLLQLYDPLSFFGFIYREIKQALIDMERMFELLGEGRE FT IADPPGALALRLEGGAVEFREVYFGYDPRRPILKGVSFRIPAGKTVAVVGTSGAGKSTL FT ARLLFRFYDADRGAILVDGQDVRGVTQASLRAAIGVVPQDTVLFNDTIHYNIAYGRPGA FT SDGEVQAAARLAHIHDLIMAMPDGYRTMVGERGLKLSGGEKQRVAIARTLLKNPSIFLF FT DEATSALDTHTEREIQANLREVSQGRSTLIIAHRLSTIADADEIIVLGDGRVVERGRHQ FT ALLAQGGIYAGMWARQQEAARPAAVALDD" FT misc_feature complement(934160..934714) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(934337..934381) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(934670..934693) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(934928..935752) FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region." FT misc_feature complement(join(935018..935083,935267..935332, FT 935345..935410,935474..935539,935600..935665, FT 935687..935752)) FT /note="6 probable transmembrane helices predicted for FT BP0899 by TMHMM2.0 at aa 36-58, 65-87, 107-129, 150-172, FT 176-198 and 259-281" FT CDS 936007..936834 FT /transl_table=11 FT /locus_tag="BP0900" FT /product="probable oxidoreductase" FT /note="Similar to Corynebacterium SP 2,5-diketo-D-gluconic FT acid reductase TR:P06632 (EMBL:M12799) (278 aa) fasta FT scores: E(): 5.9e-54, 53.008% id in 266 aa, and to FT Streptomyces coelicolor putative oxidoreductase Sc4b5.01C FT TR:Q9ZBW7 (EMBL:AL034443) (277 aa) fasta scores: E(): FT 1.7e-61, 58.303% id in 271 aa" FT /protein_id="CAE41202.1" FT /translation="MAQVPVLKLNDGNAMPQLGLGVWQVPNDQAAASVKAALAAGYRSI FT DTAAIYGNEAGVGEGLRAAGVARKDLFVTTKLWNDRHGYDEAQRAMDESLRKLGLAYVD FT LFLIHWPVAGSDKFVDAWRAMVAMKEDGRARSIGVSNFTIANLRRLVDETGVVPAVNQV FT ELHPGFAQRELRAFHAEQGIATESWSPLGQGAVMHDATLAGIAARHGKSAAQVTLRWHL FT QNGLIVIPKSVTPARIQANIDVFDFELSADEMADIDALPEGPRLGPDPATFTG" FT misc_feature 936031..936801 FT /note="HMMPfam hit to PF00248, Aldo/keto reductase family" FT misc_feature 936127..936180 FT /note="ScanRegExp hit to PS00798, Aldo/keto reductase FT family signature 1. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature 936379..936432 FT /note="ScanRegExp hit to PS00062, Aldo/keto reductase FT family signature 2." FT misc_feature 936691..936738 FT /note="ScanRegExp hit to PS00063, Aldo/keto reductase FT family putative active site signature." FT CDS 936880..937860 FT /transl_table=11 FT /locus_tag="BP0901" FT /product="putative oxidoreductase" FT /note="Similar to Streptomyces coelicolor putative FT aldo/keto reductase Scf81.28C TR:Q9RJC4 (EMBL:AL133171) FT (307 aa) fasta scores: E(): 6.4e-83, 66.667% id in 309 aa, FT and to Escherichia coli hypothetical oxidoreductase YajO or FT b0419 SW:YAJO_ECOLI (P77735) (324 aa) fasta scores: E(): FT 9.9e-80, 61.846% id in 325 aa" FT /protein_id="CAE41203.1" FT /translation="MEYVRLGSTGLKVSRLCLGCMTYGEPARGNHAWTLDETQSRPFFR FT QALDAGINFFDTANSYSDGTSEEFLGRALREYVPRDEVVVATKVFFPLRKEPNSGGLSR FT KAIMREIDASLRRLGTDYVDLYQIHRWDYDTPIEETLQALHDVVKAGKARYIGASSMHA FT WQFAKALYLADRHGWTRFSTMQNHYNLLYREEEREMLKLCCAEGVGVLPWSPLARGRLT FT RDWAEGSARADTDDVLKRLYSATEQADRGVIDAVGEVAAQRGVSRAQVAMAWLLRQPAV FT TAPIVGASKPRHLEDAVAALALRLTDEEAARLEAAYAPHPVAGFA" FT misc_feature 937042..937350 FT /note="HMMPfam hit to PF00248, Aldo/keto reductase family" FT CDS complement(937857..938069) FT /transl_table=11 FT /locus_tag="BP0902" FT /product="putative membrane protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc2926 TR:Q9A4B1 (EMBL:AE005957) (70 aa) fasta FT scores: E(): 0.0073, 44.231% id in 52 aa" FT /protein_id="CAE41204.1" FT /translation="MTPRQHFYFVWGMPIVLGALSVFGLLAALLGTGVWHWASWLALAW FT LLVVIARFWIVPRERRPAPGPRRGG" FT misc_feature complement(join(937902..937967,937983..938048)) FT /note="2 probable transmembrane helices predicted for FT BP0902 by TMHMM2.0 at aa 7-29 and 34-56" FT misc_feature complement(937989..938069) FT /note="Signal peptide predicted for BP0902 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.899) with cleavage site FT probability 0.648 between residues 27 and 28" FT CDS complement(938066..939247) FT /transl_table=11 FT /locus_tag="BP0903" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1909 TR:Q9I2J5 (EMBL:AE004617) (383 aa) fasta FT scores: E(): 1.4e-72, 52.910% id in 378 aa, and to FT Caulobacter crescentus hypothetical protein Cc2927 FT TR:Q9A4B0 (EMBL:AE005957) (394 aa) fasta scores: E(): FT 2.4e-53, 50.681% id in 367 aa" FT /protein_id="CAE41205.1" FT /translation="MSTASTIKTWYLVHKWTSLVCTLFLLIICITGLPLVFHHEIEHLL FT DEGKPVAQVAEGTPDASLDTIVARAHALYPDEYIDYVFLDDEEPQVYVGFTPKLGQAVE FT AGHAVRVDARTGDILHDGPKYSADRFSFMGIMLALHVDLYAGLAGELFLGLMGLLFVIA FT IVSGVVLYGPFMKKLDFGTVRASRSNRLKWLDLHNLLGIVTLVWAFVVGLTGVINELST FT PLFRLWQQTELQAMTAPYQGKPVPRPAELSAPQRAADTALAAVPDRALTGISYPGNAFG FT SPQHYIVWLKGNTPLTSKLNTPVLVDGKTGELAAVARMPWYLTVLELSRPLHFGDYGGM FT PLKIIWALLDLITIVVLGSGLYLWLARRKATDARVAELVRRHQQAAEPQRTPA" FT misc_feature complement(join(938150..938215,938594..938659, FT 938723..938788,939134..939199)) FT /note="4 probable transmembrane helices predicted for FT BP0903 by TMHMM2.0 at aa 16-38, 153-175, 196-218 and FT 344-366" FT CDS 939411..940145 FT /transl_table=11 FT /gene="pphA" FT /gene_synonym="prpA" FT /locus_tag="BP0904" FT /product="serine/threonine protein phosphatase 1" FT /EC_number="3.1.3.16" FT /note="Similar to Escherichia coli serine/threonine protein FT phosphatase 1 PphA or PrpA or B1838 SW:PRP1_ECOLI (P55798) FT (218 aa) fasta scores: E(): 1.9e-18, 34.821% id in 224 aa, FT and to Bacteriophage lambda serine/threonine protein FT phosphatase SW:PP_LAMBD (P03772) (221 aa) fasta scores: FT E(): 1.2e-18, 33.803% id in 213 aa" FT /protein_id="CAE41206.1" FT /translation="MAPNLQYPAFLRLPRNPAGRDFAVGDIHGHFSRLEQALDECGFDP FT RRDRLFSVGDLIDRGPDSEAAVQWLAHPWFYAVQGNHEDYAIRHVRTGLVDQDNWRSYG FT GGWFLDAAPERQRAWAGAFAALPVVIEVATQAGPVGLLHADCPVRDWSRLEYFLQARPK FT RARSVCQWSRERLASGDARGVDGIRAVVAGHTPVSEPVVLGNVYHIDTQGWRPHGYFTL FT FDLCTLSAWPRPAQAGAPAARG" FT CDS complement(940147..942759) FT /transl_table=11 FT /gene="mrcA" FT /gene_synonym="ponA" FT /locus_tag="BP0905" FT /product="penicillin-binding protein 1A" FT /EC_number="2.4.2.-" FT /note="Similar to Escherichia coli penicillin-binding FT protein 1A MrcA or PonA or B3396 SW:PBPA_ECOLI (P02918) FT (850 aa) fasta scores: E(): 2.1e-61, 37.243% id in 827 aa, FT and to Pseudomonas aeruginosa penicillin-binding protein 1A FT MrcA or PonA or Pa5045 SW:PBPA_PSEAE (Q07806) (822 aa) FT fasta scores: E(): 3.7e-62, 38.882% id in 805 aa" FT /protein_id="CAE41207.1" FT /translation="MNTSSQSTKPPPPGGPRLFRKSLLIKAGVAVAGLGAAGALALGLA FT LALAWPSLPELHAMTDYRPRVPLRVYTADGVLIGEFGEEHRNVLRADEIPQVMKQAVLA FT AEDDRFYQHGGVDWMGVARAVLTNMVKLSKSQGGSTITMQVARNFYLSSEKTYSRKFYE FT LLLTYKIEAELTKDQILELYMNQIYLGHRSYGFAAASRTYFGKPLSEVTPAEAAMLAGI FT PKAPSRANPLASLPRATARQQYVLGRMQTLGYLTPEQVQEARAQTIVLRGSEGGPAHGF FT AIHGEYPAELVRQLMYSIYQDGAYTHGIDVYTTIDSKAQQAAYRAVRAGVLDYTRRAPY FT PGPQAQIDLPDGIEQDAQAFDEILDSVQDQAPDSDDLLAGVVLSTSPTSVTVARTATDI FT VTVDDKKALAIVARALAPNAKDALRIRRGSVVYLHKNGDTWEIINMPALQAALVSMSPA FT DGAISAMIGGFDFHRGSFNRVTQAWRQPGSTIKPFVYAAALERGMTPATQVNDQPFMLT FT AEQTGSRAWEPKNDGNRYEPMLTLREGLYRSKNMVSIRILQAIGPEYARDYLTRFGFEQ FT ARWPAMLPLALGAGGATPLQVANAYSVFANGGYRVTPYLIDRVTDRSGKVLMQTTPVKA FT GDETARAIDPRTAWVIDDIMHDTTTKGTAARVYRTLKRNDIAGKTGTTNDAVDVWFSGY FT TAQQTTTVWMGFDQPRSLGTNEFGSGLALSTWLDYEQPTLKGTPQAPRAPRPQGLIVDN FT GEYYFSEFPPGQAVAALDLSSGDELTDFLNNMRPSDGAPARVQQPGQPPAGSSSGGQPP FT IPPIPVPRADLPDGQATPASLPLGAPPAAASAPPAAPAHGGASAQPVTLPGRVGATPL" FT misc_feature complement(940576..941502) FT /note="HMMPfam hit to PF00905, Penicillin binding protein FT transpeptidase domain" FT misc_feature complement(942052..942558) FT /note="HMMPfam hit to PF00912, Transglycosylase" FT misc_feature complement(942613..942678) FT /note="1 probable transmembrane helix predicted for BP0905 FT by TMHMM2.0 at aa 51-73" FT CDS complement(942895..944808) FT /transl_table=11 FT /locus_tag="BP0906" FT /product="putative peptidase" FT /note="Similar to Rickettsia conorii FT acylamino-acid-releasing enzyme Rc0603 TR:AAL03141 FT (EMBL:AE008621) (676 aa) fasta scores: E(): 2.3e-62, FT 34.783% id in 621 aa, and to Caulobacter crescentus prolyl FT oligopeptidase family protein Cc3723 TR:Q9A243 FT (EMBL:AE006030) (667 aa) fasta scores: E(): 3.4e-42, FT 30.653% id in 659 aa" FT /protein_id="CAE41208.1" FT /translation="MLTLIKRTVLAAGLIGTTLGAAAQPPRAYPLKDFFRNPERGYFRL FT ADDGKTLGFMQPVSIDGQPPRMNIYVQALADGVPAGEPRKLTSETARDISNFFWKGDDT FT VLYQKDFGGDENFHVLAVNARTGQVADLTPYEGVRASIEDDLPDDPDHVLISHNRRDPQ FT VFDVYRVNVRTGAAELVAQNPGNVVGWQTDHAGKVRAAITSDGLNTTLLYRDDEAAPFR FT PLITTDYRVSVSPAFFTFDDRKLYALSNRGRDKLALVVIDPATPDVEQPVFEPDEVDLD FT AAGYSRKRKVLTVASYQTDKPRHRFFDAETEALYARLARALPGYDFALQGWNRDEDTFI FT VAAYNDRTPGSRYLYDARRDSLHKLADINPAIPEADMAPVRPVSYQSRDGLTIHGYLTL FT PAGRAPRNLACIVNPHGGPWARDGWGYNPEVQFLANRGFCVLQMNFRGSTGYGRKFWEA FT GFGQWGLKMQDDITDGVQWLIDQGIADPRRIGIYGGSYGGYATLAGVAFTPDLYAAAVD FT YVGVSNLFTFMNTIPPYWKPLLAKMQDMVGDPVRDKARLEATSPALHVDRIKTPLFIAQ FT GAKDPRVNKAESDQVVQALRQRGVEVEYMVKDNEGHGFHNDENKFEFYAAMEKFFTEHL FT KP" FT misc_feature complement(943309..943506) FT /note="HMMPfam hit to PF00326, Prolyl oligopeptidase FT family" FT misc_feature complement(944740..944808) FT /note="Signal peptide predicted for BP0906 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.925 between residues 23 and 24" FT CDS join(944968..945372,945372..945398,945401..945421) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0907" FT /product="putative lipoprotein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have two frameshift FT mutations, following codons 156 and 144. The frameshift FT occurs within dimeric tracts of (G)2 and (TC)2, FT respectively. The sequence has been checked and believed to FT be correct. No significant database matches" FT /db_xref="PSEUDO:CAE41209.1" FT misc_feature 944989..945021 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT variation 945372..945373 FT /note="(G)2 in pertussis; (G)3 in parapertussis and FT bronchiseptica" FT variation 945397..945400 FT /note="(TC)2 in pertussis; (TC)1 in parapertussis and FT bronchiseptica" FT CDS complement(945424..945834) FT /transl_table=11 FT /locus_tag="BP0908" FT /product="conserved hypothetical protein" FT /note="Similar to Halobacterium halobium hypothetical 15.6 FT kDa protein in phr 5'region SW:YPHR_HALHA (P20378) (151 aa) FT fasta scores: E(): 2e-08, 29.688% id in 128 aa, and to FT Halobacterium sp Vng1336C TR:Q9HQ45 (EMBL:AE005055) (151 FT aa) fasta scores: E(): 2e-08, 29.688% id in 128 aa" FT /protein_id="CAE41210.1" FT /translation="MSTPHTDFFGLTIPFMQLLGVVPEHSGNGTARTRLPARADLVNSR FT GDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMNTSFMSPGRGDLVIETRCLRRGASI FT AFCKGEIRDSAGELVAKATATFKIIQRRPGGD" FT misc_feature complement(945448..945810) FT /note="HMMPfam hit to PF02584, Uncharacterized protein FT PaaI, COG2050" FT CDS 945932..947017 FT /transl_table=11 FT /gene="dinP" FT /locus_tag="BP0909" FT /product="DNA-damage-inducible protein p" FT /note="Similar to Escherichia coli DNA-damage-inducible FT protein P DinP or B0231 SW:DINP_ECOLI (Q47155) (351 aa) FT fasta scores: E(): 1.1e-46, 45.845% id in 349 aa, and to FT Neisseria meningitidis ImpB/MucB/SamB family protein FT Nma1661 or DinP TR:Q9JRG1 (EMBL:AL162756) (352 aa) fasta FT scores: E(): 1.3e-69, 56.358% id in 346 aa" FT /protein_id="CAE41211.1" FT /translation="MSQLQRKIVHIDMDAFYASVEQRDNPALRGLPVVVAWTGPRSVVC FT AASYEARRYGVHSAMAAARAQRLCPDAVYVPPDFNRYREVSRQVRAIFARHTDLIEPLS FT LDEAYLDVTCNKLGLASATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNKPDG FT LFVIKPSRVLDFLQPLPVRKVPGVGKVMQARLEQLGIQTVGDLSRHSVAELEQRFGRYG FT VRLYELARGIDERAVQADQPAQQVSAETTFDTDLALEALGEALERLAAKVWEQGAKKGR FT IGRTTVLKLKTDRFRILTRSLTLMQPPGSAAELAAIARQLCTRVDLPAHTRYRLVGVGM FT SNFPDAQAEAPRQAELFGDAF" FT misc_feature 945962..946966 FT /note="HMMPfam hit to PF00817, impB/mucB/samB family" FT repeat_region 947014..947045 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 947014..948066 FT CDS 947116..948066 FT /transl_table=11 FT /locus_tag="BP0910" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41212.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 947374..947439 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 947497..948030 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(948035..948066) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(948064..948141) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0910A" FT /product="N-terminal region of a putative decarboxylase FT (pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481. No significant database matches" FT CDS complement(948154..948705) FT /transl_table=11 FT /locus_tag="BP0911" FT /product="putative decarboxylase" FT /note="Similar to Streptomyces wedmorensis FT phosphonopyruvate decarboxylase Fom2 TR:Q56190 FT (EMBL:AB016934) (384 aa) fasta scores: E(): 0.00013, FT 32.278% id in 158 aa, and to Methanothermobacter FT thermautotrophicus phosphonopyruvate decarboxylase related FT protein Mth1206 TR:O27274 (EMBL:AE000888) (165 aa) fasta FT scores: E(): 9.5e-10, 36.957% id in 138 aa" FT /protein_id="CAE41214.1" FT /translation="MGAIAAHETGDTAATATWDETVWRILKKEDIRLVTYVPDKVLKPL FT IDRVEADDHFQVVCPAREEEALGIVCGAQMAGMRSILLTQTSGFATLANVLASLPVPYE FT IPVVMVISERGALGDRQLVQVRVWQTMRPILDSLGIPHHTLTRADAVEFVAEEAIRQAF FT ATRSPAALILSPKLTKKSSD" FT CDS join(948879..949526,949525..949878) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0912" FT /product="LysR-family transcriptional regulator FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 216. The frameshift occurs within FT a dimeric tract of (GC)2. The sequence has been checked and FT believed to be correct. Similar to Escherichia coli cyn FT operon transcriptional activator CynR or B0338 FT SW:CYNR_ECOLI (P27111) (311 aa) fasta scores: E(): 4.5e-15, FT 28.013% id in 307 aa, and to Rhizobium meliloti putative FT transcriptional regulator protein Smb20123 TR:CAC48523 FT (EMBL:AL603642) (298 aa) fasta scores: E(): 1.9e-17, FT 28.276% id in 290 aa" FT /db_xref="PSEUDO:CAE41215.1" FT misc_feature 948897..949325 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 948939..949031 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT variation 949524..949527 FT /note="(GC)2 in pertussis; (GC)3 in parapertussis and FT bronchiseptica" FT CDS 949983..950957 FT /transl_table=11 FT /locus_tag="BP0913" FT /product="putative exported protein" FT /note="Similar to Escherichia coli putative aliphatic FT sulfonates binding protein precursor SsuA or B0936 FT SW:SSUA_ECOLI (P75853) (319 aa) fasta scores: E(): 1.7e-09, FT 24.903% id in 257 aa, and to Agrobacterium tumefaciens FT Agr_l_1399p TR:AAK89280 (EMBL:AE008268) (338 aa) fasta FT scores: E(): 2.9e-13, 28.197% id in 305 aa" FT /protein_id="CAE41216.1" FT /translation="MKSRICRRLAGALLGVVAACASQAQDTIRLGLQAVPTDELYQARD FT WAQPYGLKTEISTYSSAGDSLKAFLAGRVDVVSGGAARLVTMAAKQPEVFYIVAANQYG FT GDRYGIIVGPEAPYKSIADLKGKKIGVVSGSGAHGTLMLYLEKNQLSPKDFRFVNMKVE FT DIAAAVNRGVVDAGLAWEPHVALAEVNGAVKRIQSMKGVNESPNFILVNREYAGKHPEA FT VAKYIASMIDMSQLTANDPKKAGEMIAAQLGKSGVSIPPKAMELAVSRIVVDPRIEDRL FT LEELPAIAEPMIAAGRINAMPEFGKLVQKSYYERAAALAKARQ" FT misc_feature 949983..950054 FT /note="Signal peptide predicted for BP0913 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 24 and 25" FT misc_feature 950010..950042 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 950977..951849 FT /transl_table=11 FT /locus_tag="BP0914" FT /product="probable inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Escherichia coli taurine transport system FT permease protein TauC or SsiC or B0367 SW:TAUC_ECOLI FT (Q47539) (275 aa) fasta scores: E(): 1e-26, 35.887% id in FT 248 aa, and to Pseudomonas aeruginosa probable permease of FT ABC taurine transporter Pa3936 TR:Q9HX80 (EMBL:AE004811) FT (272 aa) fasta scores: E(): 4.9e-27, 33.585% id in 265 aa" FT /protein_id="CAE41217.1" FT /translation="MKPLAATTAHTVMIRPAARRTPGACAAYAEFGRFMLPIVTLLVFW FT EFAVRAGWIASNIFPSPSMIFARASEQLFSTGPEQGMLFKHIGASLYRAISAFLLSVLI FT GIPLGFCLGLMPSVHKWTSPILSVMLPLPAVAWTPILLVAFGQGDRTIITVCFLGAFFP FT VLYSTIQGVKAVSKQSIWVVRSMGGKRRHVLLNVLLPSCLPALISGLKLGMAHSWRTLV FT AAEMLAAISTGLGYMIFAARSYMDVSTMFVGIALLALIGMAIEYGIFGMLEQRTIRKWH FT GASRIGGSK" FT misc_feature join(951250..951318,951346..951414,951433..951492, FT 951550..951618,951637..951696,951724..951792) FT /note="6 probable transmembrane helices predicted for FT BP0914 by TMHMM2.0 at aa 92-114, 124-146, 153-172, 192-214, FT 221-240 and 250-272" FT misc_feature 951487..951705 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS 951846..952673 FT /transl_table=11 FT /locus_tag="BP0915" FT /product="probable inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Escherichia coli taurine transport system FT permease protein TauC or SsiC or B0367 SW:TAUC_ECOLI FT (Q47539) (275 aa) fasta scores: E(): 2.1e-25, 32.530% id in FT 249 aa, and to Rhizobium loti taurine transport system FT permease protein Mlr4519 TR:Q98DW5 (EMBL:AP003004) (286 aa) FT fasta scores: E(): 4.4e-24, 32.830% id in 265 aa" FT /protein_id="CAE41218.1" FT /translation="MSSAMASSMPGGDGARVFDRLLVPLVSLGVPLLIWEFLARSGLVS FT DFLFPPPSSIFSTLWSDSGADVHGGQLYRHVYYSMMRLLAGLALAAAVGTLIGILIGLT FT RWGRFVFKPLLSLFMPVPTLAWTPILLLLIGVDNKTTILIVFIAASFEVILNVVAGIEN FT MNVKVFWVARSMGASRLQIFFKVIVPGILPYLITGVRLGSGYAWRALIAAEMLAASSYG FT LGFMIYEASEFMDMTTIYGGLIMIALLGYLIENVLMGAFEERTVGKWGVQVER" FT misc_feature join(951906..951962,952083..952151,952185..952253, FT 952263..952331,952389..952448,952458..952526, FT 952560..952628) FT /note="7 probable transmembrane helices predicted for FT BP0915 by TMHMM2.0 at aa 21-39, 80-102, 114-136, 140-162, FT 182-201, 205-227 and 239-261" FT misc_feature 952323..952541 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS join(952697..953098,953102..953476) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0916" FT /product="putative ATP-binding protein of a transporter FT (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TGA stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Pseudomonas putida sulfate ester FT transporter protein AtsC TR:Q9WWU7 (EMBL:AF126201) (287 aa) FT fasta scores: E(): 7.3e-31, 48.544% id in 206 aa, and to FT Methanococcus jannaschii hypothetical ABC transporter FT ATP-binding protein Mj0412 mj0412 SW:Y412_METJA (Q57855) FT (267 aa) fasta scores: E(): 4.9e-39, 49.573% id in 234 aa" FT /db_xref="PSEUDO:CAE41219.1" FT misc_feature 952808..952831 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT variation 953099..953101 FT /note="TGA in-frame stop codon in pertussis; GGA in FT parapertussis and bronchiseptica" FT CDS 953576..954997 FT /transl_table=11 FT /locus_tag="BP0918" FT /product="conserved hypothetical protein" FT /note="Similar to Methanothermobacter thermautotrophicus FT conserved protein Mth965 TR:O27046 (EMBL:AE000870) (452 aa) FT fasta scores: E(): 3.4e-34, 32.143% id in 420 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa0881 FT TR:Q9I564 (EMBL:AE004522) (450 aa) fasta scores: E(): FT 2.2e-30, 29.556% id in 450 aa" FT /protein_id="CAE41220.1" FT /translation="MREMSMNEETAAKLQGLTRRFAKLVHDLKFEDLPEEVLHKAKLII FT RDGLGNQIAASAISEPARRVVEIVREWGGKPEATVIGYGFKVPAPLAAMCNAMLGHGVE FT LDDAHGSGLIKGGSVMIPSIMALAEANGKSGRDVITAIVAGYEVAVRIAKAINLGHRQR FT GFHTTGTVSLFGAAAGGAKLLGCDEEGIAAAIGLAAMQSAGIQSYLDDPCMAKPFSPGK FT SAFNGTMAAVMASRGFAGPRKALECKEGFFNAYCEDIRVDDLLDGLGERFVIMEVGFKP FT HAACRYAHGPIDLAQQFFEEGVRLEDVEKIDVRMCELSIRQASKPKAPNLNAAMGSTEF FT GVALALAGGRNGLREYWDGFNDQRVHEAAADRTRLIMEPAYGVTGRQAAMAVTLKDGRV FT LQRDQAEPKGEPSNPLTDQELTDKFTGLVDMVETSSQVSGEFSQRLMRLEDEKAIADLI FT GPLKAAGQTPALRAA" FT CDS 955102..956556 FT /transl_table=11 FT /gene="gabD" FT /locus_tag="BP0919" FT /product="putative succinate-semialdehyde dehydrogenase FT [NADP+]" FT /EC_number="1.2.1.16" FT /note="Similar to Escherichia coli succinate-semialdehyde FT dehydrogenase [NADP+] GabD or B2661 SW:GABD_ECOLI (P25526) FT (482 aa) fasta scores: E(): 1.3e-46, 35.532% id in 470 aa, FT and to Bacillus halodurans NADP-dependent FT glyceraldehyde-3-phosphate dehydrogenase Bh1738 TR:Q9KC36 FT (EMBL:AP001513) (482 aa) fasta scores: E(): 7.4e-67, FT 40.812% id in 468 aa" FT /protein_id="CAE41221.1" FT /translation="MNVTDGIAQRSMAEYTGILINGVWQAGEGSFPVLDKYTLVPAAEV FT FRASRRQVAQAVAQCKAAADRGAPAARERAAVLRRAAGLLDTYRQDFEAVMMVEGGFTV FT HDISAEFTRAKVTLELSADEALRLTGSMVPFQASPGAEHKLGFTVRVPVGVVAAITPFN FT APLNTVLHKVAPAFAAGNAVVLKPSAFTPLTSALLARVLLEAGMPPEFLAVVQGEGDDV FT GTWLLEEQDVAFYTFTGSTRVGRIIQRAAGLRRTQMELGSIASTIVCADADLEAAVPRI FT ANAAFRKAGQVCTSIQRLYVEDALKNELIERLSRYLDDMPAGDPRAVATRVGPMISEAA FT ATRAQAWIAEAVEAGARLVRGGERQGAVVQPAVLADVPESCSAWSTEVFSPMVSVGGFA FT RFDDVLASANDTPYGLAAGIFTNDHARIMSAVRSLRFGTVHINETSSARCDVMPFGGVK FT DSGFGKEGPGYAAREMTEERLIVFNQ" FT misc_feature 955168..956553 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT CDS complement(956606..958009) FT /transl_table=11 FT /locus_tag="BP0920" FT /product="putative exported protein" FT /note="Similar to Salmonella typhi hypothetical protein FT R0146 TR:Q9L5J6 (EMBL:AF250878) (467 aa) fasta scores: E(): FT 4.6e-137, 73.176% id in 466 aa" FT /protein_id="CAE41222.1" FT /translation="MIDVLVIGGGNAALCAALSAREAGASVLLLEAAPREWRGGNSQHT FT RNLRCMHDAPQDVLVESYPEEEYWQDLLKVTGGITNEHLARLVIRRSSNCRPWMRSHGV FT RFQNSLSGTLHLARTNAFFMGGGKALVNAYYRSAAALGIQVRYDTPVAAIERDGERFVA FT AVLEDGARIEAGSCVLAAGGFESNLDWLDQAWGTNENGERPALQFLIRGTRYNRGVLLR FT HMLDSGADAIGDPTQAHMVAIDARSPLYDGGICTRIDCVPLGIVVNRAGQRFYDEGEDF FT WPKRYAIWGRLVAQQPGQIAWSIIDRKSIGRFMPPVFPGTQADSIEALARKLGLPVEQT FT SRTIAEYNATCISGTFDHTVLDDCRTQGLTPAKTHWASPIVEPPFQGFPLKPGITFTYL FT GLKTDDTAAVRFNDRPSPNLFVAGEMMAGNILGKGYTGDIGMAIGTAFGRIAGAGAAQH FT ALAGRRQAA" FT misc_feature complement(956975..957040) FT /note="Predicted helix-turn-helix motif with score 1357 FT (+3.81 SD) at aa 324-345, sequence DSIEALARKLGLPVEQTSRTIA" FT misc_feature complement(957944..958009) FT /note="Signal peptide predicted for BP0920 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.600) with cleavage site FT probability 0.232 between residues 22 and 23" FT CDS complement(958030..959214) FT /transl_table=11 FT /gene="citB" FT /locus_tag="BP0921" FT /product="citrate utilization protein B" FT /note="Similar to Escherichia coli citrate utilization FT protein B CitB SW:CIT2_ECOLI (P05853) (379 aa) fasta FT scores: E(): 2.6e-91, 60.743% id in 377 aa, and to FT Salmonella typhi putative citrate utilisation protein CitB FT TR:Q9L5J7 (EMBL:AF250878) (379 aa) fasta scores: E(): FT 2.3e-90, 60.212% id in 377 aa" FT /protein_id="CAE41223.1" FT /translation="MSTPYTESQVMARATIPIAVEDTGIEHDEAQARRILTICNACRYC FT EGFCAVFPAMTRRLDFVKEDVHYLANLCHNCGACLHACQYAAPHEFDVNIPRTLAKVRL FT KTYSEYAWPRALGQLYDRNGLTLSLATAVGLSLFLALLFWLNGALWHAPLQGNFYAIFP FT HNLLVAMFGLVFLYAALALGIGATRFWRGTRQDAAPPSSASGAAAEASFDVLTLRYLGG FT GHGEGCNEESARFTLWRRRFHHLTFYGFMLCFAATGVATVYHYALGWQAPYPVLSLPVL FT LGTAGGIGLLIGPAGLYLLNRKRHADHGDPAQHAMDRGFMALLFFVSLTGLLLLALRDT FT SWMAVLLAVHLGFVMAFFLTMPYGKFAHGIYRSAALLKNAVEKRTPGTLNVGAD" FT misc_feature complement(join(958123..958188,958204..958254, FT 958318..958383,958414..958479,958660..958716, FT 958777..958842)) FT /note="6 probable transmembrane helices predicted for FT BP0921 by TMHMM2.0 at aa 124-146, 166-185, 245-267, FT 277-299, 320-337 and 342-364" FT misc_feature complement(958948..959019) FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT CDS complement(959257..960432) FT /transl_table=11 FT /locus_tag="BP0922" FT /product="conserved hypothetical protein" FT /note="Similar to Bacillus subtilis hypothetical 39.5 kDa FT protein in sigZ-csn intergenic region YraM SW:YRAM_BACSU FT (O07931) (367 aa) fasta scores: E(): 3.4e-41, 38.462% id in FT 364 aa, and to Vibrio cholerae hypothetical protein Vc1339 FT TR:Q9KSB9 (EMBL:AE004213) (400 aa) fasta scores: E(): FT 5.1e-39, 34.896% id in 384 aa. Also similar to BP2370, FT 35.459% identity (36.968% ungapped) in 392 aa overlap." FT /protein_id="CAE41224.1" FT /translation="MTADPEQLSLPCLYMRGGSSKGGFFLAADLPADPLERDATLLAAY FT GSPDARQIDGIGGADPLTSKAAIVARSGRPDADVEYTFCQVDLTRAQVSTGGNCGNMLA FT AVGPYAVLRGLIPAREGQNRVRIYTTNTKQVVEASFAVRAGVPCVEGPTVVPGVPGSGA FT TVAIDFGDCAGSVSGTLLPTGRAADAIEIDGRPVRVSLVDAATPFVYVVAEDIGGDATA FT TPQDIQNDSALMDRLEQARGWAAVTLGLVDDARKARETSPNVPRVMMISAPRDYVAGDT FT PIKAADINLCVRQLAMQKPHKALAVTGAVCTAIACRIPGSVVQEQLRGDTGSEIRLGHP FT SGALSVDSQVDQTPAGPRVRKAALNRTARLIMAGQLFIAREKIRQLMQRMR" FT CDS 960603..961418 FT /transl_table=11 FT /locus_tag="BP0923" FT /product="conserved hypothetical protein" FT /note="Similar to Methanococcus jannaschii hypothetical FT protein Mj0255 SW:Y255_METJA (Q57703) (251 aa) fasta FT scores: E(): 2.6e-16, 32.500% id in 240 aa, and to FT Methanothermobacter thermautotrophicus conserved protein FT Mth1674 TR:O27710 (EMBL:AE000925) (258 aa) fasta scores: FT E(): 3.5e-16, 30.116% id in 259 aa" FT /protein_id="CAE41225.1" FT /translation="MDKPRTAPVASLSPLSFDHDHRSKKPRAVGLTSVIDFGPDGFGWA FT GPASLRDYLRCVADYIDYAKIYALNALILPEEIVRETVRIYRDADIKPYAGGILFEYAY FT LKNELDGYIRHLKKLGMPRIEVSENYLDFGDDERMRHIETMQKHGFEVIYEFGRKNPTE FT PFSLAQLERVIRSNVAMGVHHTIIEQSEIDCVSASNPAILKDIAARDWFRNIFIEADPY FT AFPKGHATLLEKFGDGVNLANITADQVLRLQGFRYGVGRAVNYSILSRI" FT misc_feature 960648..961385 FT /note="HMMPfam hit to PF02679, Uncharacterized ACR, FT COG1809" FT CDS 961460..962356 FT /transl_table=11 FT /locus_tag="BP0924" FT /product="putative transcriptional regulator" FT /note="Similar to Klebsiella oxytoca CymJ TR:Q48400 FT (EMBL:X86014) (268 aa) fasta scores: E(): 5.8e-10, 24.895% FT id in 237 aa, and to Bacillus subtilis YrhO TR:O05405 FT (EMBL:U93874) (275 aa) fasta scores: E(): 4.8e-13, 25.704% FT id in 284 aa" FT /protein_id="CAE41226.1" FT /translation="MNNTRSAYEKIIKDLQGVGFSDYEAKTYIALLLTPNATAYEISKE FT AGIPKANCYSVLEALRKNGAVQAVSENPVKYVAVDPNRYFNQMVELTQLRCEDLKESLK FT NIGHLPQEDLVWSLNDAAAVGLHIEKMIGSARDTIRIKAADTTLEPHLPSLKKAARRGV FT KVLIILFGEDVRPFELGKNCKVYLHEGNGIRVGISHKLITVTRDYKEALVAEVGRDAYG FT SYTENKPIVTLADSLLRHEIYFAEIFSCFGDEIQEKFGPALVKLRESYLPADQADALKV FT FLETADPARLAGKATAA" FT misc_feature 961487..962191 FT /note="HMMPfam hit to PF01978, Helix-turn-helix family FT DUF118" FT CDS complement(962411..963271) FT /transl_table=11 FT /locus_tag="BP0925" FT /product="putative fumarylacetoacetate-family hydrolase" FT /note="Similar to Homo sapiens unknown TR:AAH09403 FT (EMBL:BC009403) (314 aa) fasta scores: E(): 1.5e-30, FT 41.702% id in 235 aa, and to naphthalenesulfonate-degrading FT bacterium BN6 homolog to 2-hydroxyhepta-2 TR:Q50913 FT (EMBL:U38978) (144 aa) fasta scores: E(): 2.1e-31, 58.451% FT id in 142 aa" FT /protein_id="CAE41227.1" FT /translation="MQFVNLDHAGRAMAAVAHPHGYVLLPGPENGDSPELGERIRREED FT LPALGAQALAAGTPLVAGSAAVLAPLLTRPGKIICLGLNYYDHAREGGRDKPTYPWFFL FT RAPSSLVAHGQAAWLPRVSGHFYYEAELAVVIGKRARHVMPEQALDMVLGYACFNDMSV FT RDYQKKTPQWTVGKNFDRTGGFGPALVLAGDLPPGGRGLGITCRVNGRTVQEANTDDMI FT FDVAEAIGIVTECMTLEPGDVLVMGTPAGVGMARTPPLWLKPQDTVEVEIERVGRLCNP FT VLAEP" FT misc_feature complement(962501..963001) FT /note="HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) FT hydrolase family" FT CDS complement(963349..964422) FT /transl_table=11 FT /locus_tag="BP0926" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1213 TR:Q9I4C5 (EMBL:AE004551) (319 aa) fasta FT scores: E(): 2.2e-14, 30.556% id in 288 aa" FT /protein_id="CAE41228.1" FT /translation="MNEACTPTEASLDSYRNAQAWYGPQLDKHPEYWVHHLTGPELEQL FT DRAVRRADAGGKDITELSQDDFELGELGQRLQHVKHEVLHGRGLYLIRGVPVEQYTMRQ FT SAIAFWALGTNLGLPVSQNGKGHVLGHVANLGLDYADAAVRGYQTSNRLPYHTDSSDIV FT GLLCVRPAKAGGLSSVVSSTTVWNELAARHPEHARTLLDSFHRTRWGEIPEGQKPYSSS FT PVFAPYQGRMYANYVRSAIRKAQALPSVPRLSAQQNEALDCLDALTCDPALYLDMDFKP FT GDVQLLSNFTIFHSRTAYEDWPETERRRHLLRLWLACEGGPPIPEPLLRRNGLASNGRP FT NGIEVPGVKPNAPLVPQ" FT CDS complement(964548..965522) FT /transl_table=11 FT /locus_tag="BP0927" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni Orf4 protein FT TR:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): FT 2.6e-40, 36.977% id in 311 aa, and to Rhizobium meliloti FT conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 9.2e-39, FT 35.647% id in 317 aa" FT /protein_id="CAE41229.1" FT /translation="MLQRLFAVLLAASTHAAACAQTPTPAYPERTVRFLVPYTPGGNAD FT MLVRLLSLKLTEYWDKPVVVENKPGASGTIAVNTVAKAEPDGHTLVLGAAGNLVVANKL FT IKGLPYDPVEDLKAVSVVATPPFVLITAEQSRYQDVASLVADAGQRPEQITFGSAGIGS FT ANHLSGELLALMKRVKFTHVAYKGMGPALNDVVAGRIDFAFAPIPLVLPQIQAGKLRAL FT AVSGTTRTQVLPDVPTVSEAGVTGFESGAWFTVMVPKNTPDRIVDKINHDLKSAMQDAD FT FIRKLAEEGAVPIGNTPAEASASLQSEMAKWGDLIDRLNLQPI" FT misc_feature complement(965463..965522) FT /note="Signal peptide predicted for BP0927 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.642 between residues 20 and 21" FT CDS 965661..966650 FT /transl_table=11 FT /locus_tag="BP0928" FT /product="LysR-type transcriptional regulator" FT /note="Similar to alpha proteobacterium Y3F LysR-type FT transcriptional regulator PcaQ TR:Q9L5A8 (EMBL:AF253466) FT (308 aa) fasta scores: E(): 5.8e-19, 30.293% id in 307 aa, FT and to Pseudomonas aeruginosa probable transcriptional FT regulator Pa2206 TR:Q9I1R1 (EMBL:AE004647) (315 aa) fasta FT scores: E(): 5.6e-22, 31.707% id in 287 aa" FT /protein_id="CAE41230.1" FT /translation="MQKSAARGLGHIRIKHLRLLELVVQYGSLRKAAEGLHLSEPAASQ FT MLREVESTFGVTLFERGRRGMRPNPFADVLVGRVWVILRELHEMQADVAELEHRQGVSS FT DLGALPRCLHTLVPTTLVRLFGAGFRSRVRIAEGTSRQLLDALDQGAIDIAVTRLLESH FT AGLAGARNFDSAVLYEEAIAIVCSTDHPLSAVDTVTLDMLTQYDWVLPPSTSITGKLIE FT EEFVSAGLRPPVPKVEWLTSASRLTLVQKSNFLGICPASVAAELQQGGRLHVLPVNPRV FT PLPPISVVWRRTKGDIAEIMDMKNALIECAAAMPGAMETGAAVRAGEF" FT misc_feature 965700..966128 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 965739..965804 FT /note="Predicted helix-turn-helix motif with score 1555 FT (+4.48 SD) at aa 27-48, sequence GSLRKAAEGLHLSEPAASQMLR" FT misc_feature 965742..965834 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(966675..967250) FT /transl_table=11 FT /locus_tag="BP0929" FT /product="putative membrane protein" FT /note="Similar to Helicobacter pylori J99 putative Jhp0345 FT TR:Q9ZM77 (EMBL:AE001470) (189 aa) fasta scores: E(): 0.02, FT 22.527% id in 182 aa, and to Streptomyces coelicolor FT putative membrane protein Sc5e9.11 TR:Q9EWM6 FT (EMBL:AL446003) (233 aa) fasta scores: E(): 0.15, 28.333% FT id in 180 aa" FT /protein_id="CAE41231.1" FT /translation="MKLKPAPNSIFAILLRSSWWISAAIALVLIASALASTRPTFTAVL FT FFAALPFLVIAAMAAWKQRNVPSAARVERATNAARAMSWETFSKVLQEGLRQDGCEVTV FT LQGGPADYVLRRKNRLAVVGAKRWKASRVGVQALQELNAVRETHGAHDAIYVTIGEISA FT PALAYAKANQIQFMAEAELTRLLPQLST" FT misc_feature complement(join(967068..967133,967146..967211)) FT /note="2 probable transmembrane helices predicted for FT BP0929 by TMHMM2.0 at aa 13-35 and 39-61" FT misc_feature complement(967146..967250) FT /note="Signal peptide predicted for BP0929 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.463 between residues 35 and 36" FT CDS complement(967344..969002) FT /transl_table=11 FT /locus_tag="BP0930" FT /product="putative CoA ligase" FT /note="Similar to Pseudomonas diterpeniphila coenzyme A FT ligase TdtL TR:AAK95584 (EMBL:AF274704) (543 aa) fasta FT scores: E(): 7.2e-54, 33.333% id in 546 aa, and to FT Escherichia coli probable crotonobetaine/carnitine-CoA FT ligase CaiC or B0037 SW:CAIC_ECOLI (P31552) (522 aa) fasta FT scores: E(): 1.7e-38, 29.039% id in 489 aa" FT /protein_id="CAE41232.1" FT /translation="MQAANIWPAIDAEAEIGDIRQWTTGAVLARRAERCPDRVFLRFAP FT DGRSYTFADLHRRTNGIAQAMIGYGIAQGEHVAMLSPNCPECLLGNLALGKVGAVSVPI FT NTNAKASLLEYYLTHADCVTAIVADACMEAFAAVAPRLAQLRRVLVIGDAANARRMLAG FT LPLAVEPFPADAASDEAVDNDVRFTDLAYLMFTSGTTGPSKAIMIPHGAAWHWGKHSVH FT YRYFLPEDVDYVCMPLFHANALLLSCTTAIVAGTSVVLDERFSASRFWERVRAFGVTRF FT NAIGAIGNFLWSQPASPVDLEHKVRICSLAPPPPFVHDFERRFGLRVIAGYALSDYGFG FT ASLSPDAPPEKSLSLGRTCEGVAIRVVDEDDLTLPAGQVGEIVMRIEQPGAAPLGYYKM FT PEATLAAWRNLWFHTGDRGYFDADGYLYLTDRKKDMIRRRGENISSYEVESVIALHPAV FT LQVAVYPLQSEHSEDEVAVTIMLKDGQALDPDELVAFCQQQMAAHMVPRFVEFVDAMPL FT TPTNKIEKYKIKERAQADRSRLWDRERTPGARPGP" FT misc_feature complement(967614..968852) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature complement(968391..968426) FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature." FT CDS complement(969014..969997) FT /transl_table=11 FT /locus_tag="BP0931" FT /product="putative exported protein" FT /note="Similar to Burkholderia cepacia hypothetical 35.5 FT kDa protein TR:AAK81675 (EMBL:AF029344) (337 aa) fasta FT scores: E(): 5.3e-24, 33.779% id in 299 aa, and to FT Comamonas testosteroni Orf4 protein TR:Q9S155 FT (EMBL:AB024335) (325 aa) fasta scores: E(): 3e-25, 33.750% FT id in 320 aa" FT /protein_id="CAE41233.1" FT /translation="MHSGNRITRRSFMLAAGALGLALAGAAQAAAFPQRPVAMIVPFPA FT GTAVDVVARFLATRFTQQWNQSVYVENRVGADGLIGTVAAKMAPADGHTILYTGPPFLF FT VPDLNPQADYDPLKDFRPVARVTAPVYMLAATKSAPYSTFREMVETAKRTGSQLDVGTV FT GAHGTATAAGMARAAGVDINIINYKTTAQLISDSIAGHVPMVLSALGSLNTLTHNGSLK FT ALAVSGPQRSIIAPEVPTAMEAGAKDFSVVSWNSAFVRTGTPDAAVDAIAQAIHKATLS FT PDFIEFCRAQGLEPAFEDGQAWLKTLPAERSYLNGLLRQSGLLAAK" FT misc_feature complement(969911..969997) FT /note="Signal peptide predicted for BP0931 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 30 and 31" FT CDS complement(970002..970424) FT /transl_table=11 FT /locus_tag="BP0932" FT /product="conserved hypothetical protein" FT /note="Similar to Methanothermobacter thermautotrophicus FT conserved protein Mth1398 TR:O27449 (EMBL:AE000902) (133 FT aa) fasta scores: E(): 1.1e-07, 35.398% id in 113 aa, and FT to Archaeoglobus fulgidus conserved hypothetical protein FT Af2417 TR:O30254 (EMBL:AE001108) (122 aa) fasta scores: FT E(): 2.2e-07, 37.349% id in 83 aa" FT /protein_id="CAE41234.1" FT /translation="MQNSEQACGWQADPYALAYPESAPFWQAAETGTLLLPQCVRCECF FT HWHPRAFCPFCKAPDPRWTASSGQGEIFSFSVARTATPYVVAYVRLAEGPLMLTNIVDC FT DPDSVRIGQRVSARFRPTQQGRLLPVFAPTHDHEKD" FT misc_feature complement(970035..970367) FT /note="HMMPfam hit to PF01796, Domain of unknown function FT DUF35" FT CDS complement(join(970428..970613,970618..971616)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0933" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 333. The sequence has been checked FT and believed to be correct. Similar to Rhodococcus spNCIMB FT 9784 non-specific lipid carrier-like protein CampC FT TR:AAK50624 (EMBL:AF323755) (408 aa) fasta scores: E(): FT 1.2e-30, 32.741% id in 394 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa1016 TR:Q9I4V7 FT (EMBL:AE004534) (383 aa) fasta scores: E(): 1.4e-42, FT 41.463% id in 369 aa" FT /db_xref="PSEUDO:CAE41235.1" FT variation complement(970614..970617) FT /note="TCTG in pertussis; (-) deleted in parapertussis and FT bronchiseptica" FT CDS complement(971671..972030) FT /transl_table=11 FT /locus_tag="BP0934" FT /product="hypothetical protein" FT /note="no significant database matches. Similar to BP0328, FT 48.598% identity (48.598% ungapped) in 107 aa overlap." FT /protein_id="CAE41236.1" FT /translation="MQEYRLVVFTNPTQGMEDQFDEWYVNQHLPDVLAVPGFKAGQRFE FT LEQEQLKAGPHPWRFMTVFDIETDDLRHTFDTLISRVNTPLMPMSPSIAEHRIAYAYKA FT VTPKVQATPHGQQPK" FT CDS complement(972065..973039) FT /transl_table=11 FT /locus_tag="BP0935" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1e-39, 39.264% id in 326 aa, and to Agrobacterium FT tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) FT fasta scores: E(): 9.5e-39, 38.509% id in 322 aa" FT /protein_id="CAE41237.1" FT /translation="MNRRHALKVLGAAALPALGWPMSAMAGEFPQKPIRFISPSPPGGV FT TDFLPRLLGQEMSKILGQPVVIENRTGGNQTIATNYVAKAAPDGYTILLATSGALAVNP FT HLIADIPYQPLTDFEPISMLGGVASVVMATHASDARTLAQLLEAGRGKGRKPAFGHTGI FT GTSPHLVLEALKQEAGIDIVDVPYKGTQQLFTDAKGGQFEFLCNNIGPSLPLIRNGDLR FT ALAVTSRKRSPALPDVPAIAETLPGFEVLGWMAAYVPAGTPADVIDRLAAALHASLATD FT EVRKALANFAIDAMPTSPQEAKDFLAAEYRRWGEVVRRSGIRI" FT misc_feature complement(972962..973039) FT /note="Signal peptide predicted for BP0935 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 26 and 27" FT CDS 973185..974075 FT /transl_table=11 FT /locus_tag="BP0936" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Caulobacter crescentus isoleucine FT biosynthesis transcriptional activator IlvR or Cc3045 FT SW:ILVR_CAUCR (P52670) (296 aa) fasta scores: E(): 1.2e-22, FT 37.091% id in 275 aa, and to Pseudomonas aeruginosa FT probable transcriptional regulator Pa1826 TR:Q9I2R9 FT (EMBL:AE004609) (301 aa) fasta scores: E(): 5.1e-28, FT 39.373% id in 287 aa" FT /protein_id="CAE41238.1" FT /translation="MNLKSLRHFCVVATELNLRRAAEQLHIAQPALSVSIAQLESRLGA FT RLFVRGRRGVTLTEAGALLLPEAMQILRHAERLPFLARDAASGDVGTLRLAFVGSAPYR FT LLPQALPQLQRAHPGVHVELYEATTDRIVEGLHNRTFDLGIVRYPLDAFPGLELELVDE FT DGFCVALPHDHALVAAGEISLRDLADEPLLLPPREHSPPLRALMLEGFQAQGIMPRIAN FT HMATQTATVLALVEMGAGIALVPQSIVGRVGYRVAFRPLAPGSRFRTGLALLSSPDHHT FT TLADHFRRAIRQSIG" FT misc_feature 973191..973619 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 973230..973295 FT /note="Predicted helix-turn-helix motif with score 1393 FT (+3.93 SD) at aa 23-44, sequence LNLRRAAEQLHIAQPALSVSIA" FT misc_feature 973233..973325 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(974352..974744) FT /transl_table=11 FT /locus_tag="BP0937" FT /product="phage-related protein" FT /note="Similar to Bacteriophage HP1 hypothetical 14.9 kDa FT protein in rep-hol intergenic region SW:YO14_BPHP1 (P51716) FT (133 aa) fasta scores: E(): 5.6e-11, 37.795% id in 127 aa, FT and to Haemophilus influenzae phage HP2 Orf14 TR:AAK37796 FT (EMBL:AY027935) (133 aa) fasta scores: E(): 5.6e-11, FT 37.795% id in 127 aa" FT /protein_id="CAE41239.1" FT /translation="MKYPIAIEPGSDTRAWGVVVPDLPGCFSAADEGIDQAIENAKEAI FT ELWIETAIDSGAPIPPATSIANHQANPEFANWIWAIADVDPAVLDETVERVNITIPRRI FT LKRLDDRARAAGESRSSYIAHLAMTA" FT repeat_region 974772..974803 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 974772..975824 FT CDS 974874..975824 FT /transl_table=11 FT /locus_tag="BP0938" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41240.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 975132..975197 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 975255..975788 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(975793..975824) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(975854..976036) FT /transl_table=11 FT /locus_tag="BP0939" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Msr2149 protein Msr2149 FT TR:Q98J18 (EMBL:AP002999) (62 aa) fasta scores: E(): FT 2.3e-09, 51.667% id in 60 aa, and to Rhizobium meliloti FT hypothetical protein Smc04441 TR:CAC46618 (EMBL:AL591789) FT (62 aa) fasta scores: E(): 8.8e-09, 50.000% id in 60 aa" FT /protein_id="CAE41241.1" FT /translation="MDSKELIKQLERSGWTLRGVKGSHHVFTHPDRPGHISVPHPKKDL FT GIGLLNSILKAAGLK" FT misc_RNA complement(976380..976765) FT /gene="ssrA" FT /product="tmRNA" FT CDS complement(976809..977990) FT /transl_table=11 FT /locus_tag="BP0940" FT /product="putative sugar efflux transpoter" FT /note="Similar to Erwinia chrysanthemi sugar efflux FT transpoter SotB TR:Q9S3J9 (EMBL:AJ249181) (395 aa) fasta FT scores: E(): 1.7e-30, 31.967% id in 366 aa, and to FT Pseudomonas aeruginosa probable Mfs transporter pa2933 FT TR:Q9HZR4 (EMBL:AE004719) (392 aa) fasta scores: E(): FT 1e-82, 64.541% id in 392 aa" FT /protein_id="CAE41242.1" FT /translation="MLLPIILLSAAGFTILTTEFLIVGLLPPLARDLQVTVSQAGLLVS FT LFAFTVAAAGPVLTALLANLERKRLFVWVLVLFGLANALAAVSPNIWVMAFARFVPALA FT LPVFWSLASATAVELVGPAYAGRAISIIGFGIVAATVLGIPIGVLVSDAFGWRAAFAVL FT TAVAWAKALLLAYFPKPRTGRQNQRLSTQLRILRDPRLLGHVMLSLLVFTGMFTAYTYL FT ADMLEHLAGFDGKVVGWTMMAFGGAGILGNWLGGRLVDRSPLGATILFSLIMTAGLLFV FT AQVMQAPYWLALALALWGVAQAALLTVCHVRVIKAAPQAPAFAASLNISGANIGIGLGA FT AVGGHFIDSRGLASLGTVAAVIVLAAVGLAIALVLSRRPSTPRPAAPAPGIEP" FT misc_feature complement(join(976866..976931,976962..977018, FT 977058..977123,977139..977204,977226..977282, FT 977322..977387,977460..977525,977541..977606, FT 977628..977693,977712..977777,977799..977864, FT 977910..977975)) FT /note="12 probable transmembrane helices predicted for FT BP0940 by TMHMM2.0 at aa 5-27, 42-64, 71-93, 99-121, FT 128-150, 155-177, 201-223, 236-255, 262-284, 289-311, FT 324-343 and 353-375" FT CDS complement(978206..978883) FT /transl_table=11 FT /locus_tag="BP0941" FT /product="putative phosphoglycolate phosphatase" FT /EC_number="3.1.3.18" FT /note="Similar to Alcaligenes eutrophus phosphoglycolate FT phosphatase, chromosomal CbbzC SW:GPHC_ALCEU (P40852) (231 FT aa) fasta scores: E(): 2.9e-17, 36.316% id in 190 aa, and FT to Neisseria meningitidis putative phosphatase Nma0828 FT TR:Q9JVI3 (EMBL:AL162754) (220 aa) fasta scores: E(): FT 8.7e-29, 40.278% id in 216 aa" FT /protein_id="CAE41243.1" FT /translation="MSALILFDFDGTLADTAPDLAAAANRQRTRKGLEPMPYEALQPMA FT SQGARGLLRAALGLLPDHPDYEPTRLQFLEDYAAESTVHSRLFPGIADLLEDIAQRGLS FT WGIVTNKVTYLTLPIVEHLGLTRDSAVLVCGDTTAHAKPHPLPLLHAAEQAGFEAGRCV FT YVGDDLRDIQAAHAAGMPAVAAAYGYVGMEEDVTTWQAEACAASPRELWSAIEPLLPTR FT ATA" FT misc_feature complement(978320..978880) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS complement(978880..979605) FT /transl_table=11 FT /gene="ubiG" FT /gene_synonym="pufX" FT /locus_tag="BP0942" FT /product="3-demethylubiquinone-9 3-methyltransferase" FT /EC_number="2.1.1.64" FT /note="Similar to Escherichia coli 3-demethylubiquinone-9 FT 3-methyltransferase UbiG or PufX or B2232 SW:UBIG_ECOLI FT (P17993) (240 aa) fasta scores: E(): 3.8e-54, 62.281% id in FT 228 aa, and to Pseudomonas aeruginosa FT 3-demethylubiquinone-9 3-methyltransferase UbiG or Pa3171 FT TR:Q9HZ63 (EMBL:AE004741) (232 aa) fasta scores: E(): FT 6e-59, 64.629% id in 229 aa" FT /protein_id="CAE41244.1" FT /translation="MTTATQSSAPGVNVDQAEVEKFSALAARWWDPESEFKPLHAINPL FT RLGWIQETAGSLSGKRVLDMGCGGGILSESMAVAGAQVTGIDLAEKSLKIARLHGLESG FT VKVDYRAVPVEELAAEQPGQYDVVTCMEMLEHVPDPASVVRACAALAKPGGWVFFSTLN FT RNPKSFLFAIVGAEYVLRLLPRGTHSYDSFIKPSELATSARQAGLEPTGMRGMEYNPIT FT QVYSLSANTSVNYLMSTRK" FT CDS complement(979731..980312) FT /transl_table=11 FT /gene="ompA" FT /locus_tag="BP0943" FT /product="outer membrane protein A precursor" FT /note="Highly similar to Bordetella avium outer membrane FT protein A precursor OmpA SW:OMPA_BORAV (Q05146) (194 aa) FT fasta scores: E(): 5.7e-67, 91.753% id in 194 aa, and to FT Bordetella petrii OmpA protein OmpA TR:Q9S3M1 FT (EMBL:AJ242599) (152 aa) fasta scores: E(): 5.1e-49, FT 88.079% id in 151 aa" FT /protein_id="CAE41245.1" FT /translation="MNKPSKFALALAFAAVTASGAASAQTVDNWRNPFGDVWKNGTNEL FT CWRDAFWTPATGIPGCDGVPVAQKEKSAPMAAKVVFNADTFFDFDKSTLKPEGRQLLDQ FT VAQQAGTIDLETIIAVGHTDSIGTEAYNQKLSERRAAAVKTYLVSKGIDPNRIYTEGKG FT ELQPIASNKTREGRAQNRRVEIEIVGSRKN" FT misc_feature complement(979770..980057) FT /note="HMMPfam hit to PF00691, OmpA family" FT misc_feature complement(979824..979958) FT /note="ScanRegExp hit to PS01068, OmpA-like domain. FT Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(980241..980312) FT /note="Signal peptide predicted for BP0943 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.983 between residues 24 and 25" FT CDS 980683..983364 FT /transl_table=11 FT /gene="gyrA" FT /gene_synonym="parD" FT /gene_synonym="nalA" FT /gene_synonym="hisW" FT /gene_synonym="b2231" FT /locus_tag="BP0944" FT /product="DNA gyrase subunit A" FT /EC_number="5.99.1.3" FT /note="Similar to Escherichia coli DNA gyrase subunit A FT GyrA or ParD or NalA or HisW or B2231 SW:GYRA_ECOLI FT (P09097) (875 aa) fasta scores: E(): 5.9e-124, 59.147% id FT in 891 aa, and to Neisseria meningitidis DNA gyrase subunit FT A Nmb1384 TR:Q9JYX5 (EMBL:AE002487) (916 aa) fasta scores: FT E(): 3.2e-175, 59.333% id in 900 aa. Also similar to FT BP1266, 37.268% identity (42.447% ungapped) in 754 aa FT overlap." FT /protein_id="CAE41246.1" FT /translation="MDSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVH FT RRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVD FT GQGNFGSIDGDNAAAMRYTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRL FT PNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLYCLRNPECSIDELIELIPAPDFPTGGV FT IYGITGVREGYRTGRGRVIMRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELV FT NDKKIEGISDIRDESDKDGMRLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDG FT QPRLLNLKQLIEYFLQHRREVVTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKA FT APTPPVARQELMARSWDSSLVREMLARVDGDAAGGVAAFRPDDLAPEYGLQGDGNYRLS FT ETQAQEILNMRLQRLTGLEQDKIIGEYKDVMATIADLLDILARPDRITTIISEELQAIK FT AEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGR FT GKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFP FT LADGEKVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLI FT GADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGMMLEEGQTVIALLVAGDET FT QSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGRVVGAVLVMPSDEIMLITT FT GGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGVRRVVESDADADDEDGGEEGGEEG FT GDQGGDDTGAQGKDSEPTEPTE" FT misc_feature 980776..982245 FT /note="HMMPfam hit to PF00521, DNA gyrase/topoisomerase IV, FT subunit A" FT CDS 983364..984497 FT /transl_table=11 FT /gene="serC" FT /gene_synonym="pdxF" FT /locus_tag="BP0945" FT /product="phosphoserine aminotransferase" FT /EC_number="2.6.1.52" FT /note="Similar to Escherichia coli phosphoserine FT aminotransferase SerC or PdxF or B0907 SW:SERC_ECOLI FT (P23721) (361 aa) fasta scores: E(): 1.1e-51, 52.533% id in FT 375 aa, and to Pseudomonas aeruginosa 3-phosphoserine FT aminotransferase SerC or Pa3167 TR:Q9HZ66 (EMBL:AE004740) FT (361 aa) fasta scores: E(): 3.5e-51, 53.846% id in 377 aa" FT /protein_id="CAE41247.1" FT /translation="MMARPWNFSAGPSALPEAVLQQAAAEMLDWHGSGMSVMEMSHRGK FT HFVQICDEAEADLRELLGLPADYAVMFMQGGGLGENAIVPMNLMGRRSTPAADFVVTGH FT WSTRSHKEAGRYGDAQIAASAAEATEIDGQAQSSWTWLPPVDTWRVRKDSAYLHLCSNE FT TIGGVEFTEWPDPASLGAPDVPLVVDVSSHFLSRPLDIARAGLVFAGAQKNAGPAGVTV FT VIARRDLLGHALPICPSAFDYANVAADHSRYNTPPTFAIYVMGLVFKWIKAHGGVRGME FT EANRAKAELLYGYLDGSAFYRNPVQASVRSRMNVPFVLRDESLNDAFLQGAEAAGLMQL FT KGHKSVGGMRASIYNAMPLAGVQALIDYLKEFERRHG" FT misc_feature 983406..984458 FT /note="HMMPfam hit to PF00266, Aminotransferase class-V" FT CDS 984490..985575 FT /transl_table=11 FT /gene="pheA" FT /locus_tag="BP0946" FT /product="p-protein [includes: chorismate mutase and FT prephenate dehydratase]" FT /EC_number="5.4.99.5" FT /note="Similar to Escherichia coli P-protein [includes: FT chorismate mutase and prephenate dehydratase] PheA or B2599 FT or Z3891 or Ecs3462 SW:PHEA_ECOLI (P07022) (386 aa) fasta FT scores: E(): 4.9e-27, 33.773% id in 379 aa, and to FT Neisseria meningitidis chorismate mutase/prephenate FT dehydratase nmb0446 TR:Q9K0W1 (EMBL:AE002401) (362 aa) FT fasta scores: E(): 3.3e-66, 50.276% id in 362 aa" FT /protein_id="CAE41248.1" FT /translation="MDDSLQDKLRPLRDRIDAIDAQILDLLSQRARTAQEVGSVKHAAH FT ADGPVLRPEREAEVIRRLQYSNPGPFPKAAVAAVWTEIMSACRGLERGMTVAYLGPQGS FT FSEQAALEHFGHSVQQLPCPSFDEVFRAVEAGQADVGMVPVENSTEGAVNRSLDLLLNT FT PLTILGERSLVIRHCLMSQSGTMDGIKTISAHPQALAQCQGWLTRHYPDLNRVAAASNS FT EAARVAAEDPTVAAIAGEVAAPAWNLRVVAAGIQDDPQNRTRFLAVGHIEPLSSGKDKT FT SLILAVPNRAGAVYDMLAPMAANGVSMTRFESRPARTGQWEYYFYVDVLGHRDDANVAR FT ALAALQAQVAFFKVLGSYPAQ" FT misc_feature 984505..984765 FT /note="HMMPfam hit to PF01817, Chorismate mutase" FT misc_feature 984775..985308 FT /note="HMMPfam hit to PF00800, Prephenate dehydratase" FT misc_feature 985330..985560 FT /note="HMMPfam hit to PF01842, ACT domain" FT CDS 985662..986561 FT /transl_table=11 FT /gene="tyrA" FT /locus_tag="BP0947" FT /product="prephenate dehydrogenase" FT /EC_number="1.3.1.12" FT /note="Similar to Bordetella bronchiseptica prephenate FT dehydrogenase TyrA TR:Q9RND8 (EMBL:AF182427) (299 aa) fasta FT scores: E(): 4.1e-108, 99.331% id in 299 aa, and to FT Rhizobium meliloti putative cyclohexadienyl dehydrogenase FT and adh prephenate dehydrogenase protein TR:CAC47240 FT (EMBL:AL591791) (307 aa) fasta scores: E(): 1.2e-33, FT 43.110% id in 283 aa" FT /protein_id="CAE41249.1" FT /translation="MSANNSANGQGPLVPVLAVAGVGLIGGSFAAALRHAGQVGTILGV FT GRNPASLARARELGLIDEAVSPEEAAARADLVLLSTPVGGLGAMLARMRDHLRPGCLLT FT DAGSTKSQVVMAARQALGEQVSCFVPGHPIAGGERTGPEAADAGLYVRRAVVLTPLPEN FT AAASVARVRACWHACGAHVVEMDDAAHDRLLASVSHMPHFLAAVYMAQVAGSDDAQARM FT DLAGSGFRDFTRIAAGSPEMWRDIFLSNQAAMQSELAALRRVLDEAEQALGAGDGARLQ FT ALLERAAHARRNWRKDSK" FT misc_feature 985662..985751 FT /note="Signal peptide predicted for BP0947 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.880) with cleavage site FT probability 0.781 between residues 30 and 31" FT misc_feature 985698..985757 FT /note="1 probable transmembrane helix predicted for BP0947 FT by TMHMM2.0 at aa 13-32" FT misc_feature 985716..986534 FT /note="HMMPfam hit to PF02153, Prephenate dehydrogenase" FT misc_feature 986160..986195 FT /note="ScanRegExp hit to PS00436, Peroxidases active site FT signature." FT CDS 986558..987886 FT /transl_table=11 FT /gene="aroA" FT /locus_tag="BP0948" FT /product="3-phosphoshikimate 1-carboxyvinyltransferase" FT /EC_number="2.5.1.19" FT /note="Identical to the previously sequenced Bordetella FT pertussis 3-phosphoshikimate 1-carboxyvinyltransferase AroA FT SW:AROA_BORPE (P12421) (442 aa) fasta scores: E(): FT 2.5e-170, 99.774% id in 442 aa, and to Bordetella FT bronchiseptica 3-phosphoshikimate 1-carboxyvinyltransferase FT AroA SW:AROA_BORBR (Q9RND7) (442 aa) fasta scores: E(): FT 4.8e-169, 99.321% id in 442 aa" FT /protein_id="CAE41250.1" FT /translation="MSGLAYLDLPAARLARGEVALPGSKSISNRVLLLAALAEGSTEIT FT GLLDSDDTRVMLAALRQLGVSVGEVADGCVTIEGVARFPTEQAELFLGNAGTAFRPLTA FT ALALMGGDYRLSGVPRMHERPIGDLVDALRQFGAGIEYLGQAGYPPLRIGGGSIRVDGP FT VRVEGSVSSQFLTALLMAAPVLARRSGQDITIEVVGELISKPYIEITLNLMARFGVSVR FT RDGWRAFTIARDAVYRGPGRMAIEGDASTASYFLALGAIGGGPVRVTGVGEDSIQGDVA FT FAATLAAMGADVRYGPGWIETRGVRVAEGGRLKAFDADFNLIPDAAMTAATLALYADGP FT CRLRNIGSWRVKETDRIHAMHTELEKLGAGVQSGADWLEVAPPEPGGWRDAHIGTWDDH FT RMAMCFSLAAFGPAAVRILDPGCVSKTFPDYFDVYAGLLAARD" FT misc_feature 986582..987859 FT /note="HMMPfam hit to PF00275, EPSP synthase FT (3-phosphoshikimate 1-carboxyvinyltransferase)" FT misc_feature 986825..986869 FT /note="ScanRegExp hit to PS00104, EPSP synthase signature FT 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 987605..987661 FT /note="ScanRegExp hit to PS00885, EPSP synthase signature FT 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 987901..988572 FT /transl_table=11 FT /gene="cmk" FT /gene_synonym="mssA" FT /locus_tag="BP0949" FT /product="cytidylate kinase" FT /EC_number="2.7.4.14" FT /note="Similar to Escherichia coli cytidylate kinase Cmk or FT MssA or B0910 or Z1256 or Ecs0993 SW:KCY_ECOLI (P23863) FT (227 aa) fasta scores: E(): 8.1e-40, 57.674% id in 215 aa, FT and identical to Bordetella bronchiseptica cytidylate FT kinase Cmk SW:KCY_BORBR (Q9RND6) (223 aa) fasta scores: FT E(): 1.5e-79, 98.655% id in 223 aa" FT /protein_id="CAE41251.1" FT /translation="MAIFASAGAAPVITIDGPTASGKGTIAHRVAKQLGWDVLDSGALY FT RLTALAALRRGLPATDEPAVAAVAQALDVRFDGPHVYLEGRDAGHEIRQEEVGNYASRI FT AAYPGVRQALLERQRAFRQPPGLVADGRDMGAVVFPDASLKIFLVADVEARAQRRCKQL FT IEKGISANLDDLLRDMRERDARDTQRAVAPLAPAADAHVLDSSGLTIEQTVQAVLDFWC FT A" FT misc_feature 988096..988557 FT /note="HMMPfam hit to PF02224, Cytidylate kinase" FT CDS 988745..990475 FT /transl_table=11 FT /gene="rpsA" FT /gene_synonym="ssyF" FT /locus_tag="BP0950" FT /product="30S ribosomal protein S1" FT /note="Similar to Escherichia coli 30S ribosomal protein S1 FT RpsA or SsyF or B0911 or Z1257 or Ecs0994 SW:RS1_ECOLI FT (P02349) (557 aa) fasta scores: E(): 3.5e-133, 63.168% id FT in 543 aa, and to Neisseria meningitidis 30S ribosomal FT protein S1 Nmb1301 TR:Q9JZ44 (EMBL:AE002478) (561 aa) fasta FT scores: E(): 4.1e-154, 72.890% id in 557 aa" FT /protein_id="CAE41252.1" FT /translation="MDSNLMSSVSTSAILGGENFADLFAESLKSQDMKSGEVISAEVVR FT VDHNFVVVNAGLKSEALIPLEEFLNDQGELEVQPGDFVSVAIDSLENGYGDTILSRDRA FT KRLSAWLQLEQALENGELVTGTITGKVKGGLTVMTNGIRAFLPGSLVDLRPVKDTTPYE FT GKTLEFKVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGA FT FVDLGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQLGEDP FT WVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLG FT EEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLP FT GGIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVLGIDTEKERISLGIKQLEGDPFNN FT FVATHDKGAVVPGTIKSVEPKGAVITLSVDVEGYLRASEISSGRVEDATTVLKAGENIE FT AMIVNIDRKARSIQLSIKARDNAETAETIQRMSEASASSGTTNLGALLKAKLDQQRNDG FT " FT misc_feature 988838..989050 FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT misc_feature 989090..989302 FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT misc_feature 989351..989569 FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT misc_feature 989606..989830 FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT misc_feature 989867..990091 FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT misc_feature 990128..990349 FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT CDS 990477..990836 FT /transl_table=11 FT /gene="ihfB" FT /gene_synonym="himD" FT /locus_tag="BP0951" FT /product="integration host factor beta-subunit" FT /note="Similar to Escherichia coli integration host factor FT beta-subunit IhfB or HimD or Hip or B0912 or Z1258 or FT Ecs0995 SW:IHFB_ECOLI (P08756) (94 aa) fasta scores: E(): FT 5.1e-16, 56.383% id in 94 aa, and to Pseudomonas aeruginosa FT integration host factor beta-subunit IhfB or HimD or Pa3161 FT SW:IHFB_PSEAE (Q51473) (94 aa) fasta scores: E(): 4.3e-18, FT 62.637% id in 91 aa" FT /protein_id="CAE41253.1" FT /translation="MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEI FT RGFGSFSLSQRSPRIGRNPKSGEQVLVPGKQVPHFKAGKELREWVDLVGNDQGDDSSNG FT SSDPLQSVMDMHAMH" FT misc_feature 990477..990749 FT /note="HMMPfam hit to PF00216, Bacterial DNA-binding FT protein" FT CDS 991028..991342 FT /transl_table=11 FT /locus_tag="BP0952" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis putative inner FT membrane hypothetical protein Nma2149 TR:Q9JST1 FT (EMBL:AL162758) (104 aa) fasta scores: E(): 0.0012, 33.981% FT id in 103 aa, and to Bacillus halodurans Bh1239 protein FT Bh1239 TR:Q9KDH4 (EMBL:AP001511) (105 aa) fasta scores: FT E(): 7.1, 27.059% id in 85 aa" FT /protein_id="CAE41254.1" FT /translation="MRYLVWALRLLVFVAVLMFALKNTNPVAVTFYADYVVHDVPLIVV FT MLVVFVVGALFGLLLTVPAAMRRRREALRLRREVERLQAAASGTPPAVTPEAVAPMSPL FT " FT misc_feature join(991028..991087,991145..991213) FT /note="2 probable transmembrane helices predicted for FT BP0952 by TMHMM2.0 at aa 62-84 and 104-126" FT CDS 991385..992605 FT /transl_table=11 FT /locus_tag="BP0953" FT /product="putative membrane protein" FT /note="Similar to Escherichia coli hypothetical protein FT YciM precursor YciM or B1280 or Z2526 or Ecs1853 FT SW:YCIM_ECOLI (P45576) (389 aa) fasta scores: E(): 4.3e-21, FT 31.486% id in 397 aa, and to Xylella fastidiosa FT hypothetical protein Xf2435 TR:Q9PAR0 (EMBL:AE004052) (398 FT aa) fasta scores: E(): 4e-25, 33.668% id in 398 aa" FT /protein_id="CAE41255.1" FT /translation="MDFEPWWLIFVPVLFALGWLAARFDFRQMLRETRTLPDSYFRGLN FT FLLNEQPDRAIDAFVEVAKLDPETTELHFALGSLFRRRGEMERAIRVHQSLLSRSDLPV FT AEREHAQHELAQDFLKAGMLDRAEGAFEQLKDTRYALPALRSLIRIYESEHDWPRAIEA FT VKTLHGLVDEPVPQIVHYYCEQAQAALTAKPVDFDAAHAALDAADHAAGMVERGNAPAK FT ASLVRTAMLRARLAALENDPKRERLYLESILTQAPEFAGLVAEALLTNYRQADQAAAGL FT AMLQQQYQRHASLDLFNVVFRELRVQQGSAPAWAFAREALRHHPSLLGLDRLLEAELAS FT PGAPADAGPVTGADLTLLRSLIHKHTQRLDRYACRSCGFQARRFYWQCPGCNSWETYAP FT RRLEELE" FT misc_feature 991397..991450 FT /note="1 probable transmembrane helix predicted for BP0953 FT by TMHMM2.0 at aa 5-22" FT CDS 992602..993543 FT /transl_table=11 FT /gene="rfaE" FT /locus_tag="BP0954" FT /product="ADP-heptose synthase" FT /EC_number="2.7.-.-" FT /note="Similar to Salmonella typhimurium ADP-heptose FT synthase RfaE TR:Q9AJ74 (EMBL:AF155126) (477 aa) fasta FT scores: E(): 7.1e-50, 52.508% id in 299 aa, and to FT Burkholderia pseudomallei putative ADP-heptose synthase FT WaaE TR:Q9WWX7 (EMBL:AF159428) (307 aa) fasta scores: E(): FT 6.6e-59, 59.603% id in 302 aa" FT /protein_id="CAE41256.1" FT /translation="MNQYPAERIARARVLVVGDVMLDRYWFGEVDRISPEAPVPVVRVA FT RREDRLGGAANVARNVAALGAQVTLIGVVGADEVGLRIERMAAEEGVRTDLVSDTEHPT FT TLKMRVLGRQQQLLRVDFEQHPEPAALDGISAAVARQLAQHDIVVLSDYAKGVLDRVES FT IIAAAVGHSLPVLVDPKGDHYERYRGATLVTPNRAEMREAVGRWKTEDELAERAQRLRL FT DLDLEALLVTRSEQGMTLFTDAGRDHADAAAHEVYDVSGAGDTVLATLAVMRAVGLSWG FT DAMRWANRAGGIVVGKLGTSVVTAAELAGEST" FT misc_feature 992752..993408 FT /note="HMMPfam hit to PF00294, pfkB family carbohydrate FT kinase" FT misc_feature 992755..992826 FT /note="ScanRegExp hit to PS00583, pfkB family of FT carbohydrate kinases signature 1." FT CDS 993540..994529 FT /transl_table=11 FT /gene="rfaD" FT /gene_synonym="htrM" FT /locus_tag="BP0955" FT /product="ADP-L-glycero-D-manno-heptose-6-epimerase" FT /EC_number="5.1.3.20" FT /note="Similar to Escherichia coli FT ADP-L-glycero-D-manno-heptose-6-epimerase RfaD or HtrM or FT B3619 or Z5046 or Ecs4497 SW:RFAD_ECOLI (P17963) (310 aa) FT fasta scores: E(): 4.9e-49, 52.134% id in 328 aa, and to FT Burkholderia pseudomallei putative ADP-glycero-mannoheptose FT epimerase GmhD TR:Q9WWX6 (EMBL:AF159428) (330 aa) fasta FT scores: E(): 2.2e-81, 62.346% id in 324 aa" FT /protein_id="CAE41257.1" FT /translation="MIVVTGAAGFIGSNLVRGLNRRGIQDIIAVDDLTDGDKFRNLVDC FT SIADYLDKDEFRERVRGGNLPALRAVLHQGACSDTTERNGRYMLDNNYRVTLELFEYCQ FT AERVPFLYASSAAVYGGSSVYVEDPANEHPLNVYGYSKLLFDQVLRTRMDSLTAQVVGL FT RYFNVYGPHEQHKGRMASVAFHNMNQFLAEGHVRLFAGWDGYEDGGQSRDFISVEDVVA FT VNLHFLDNPDQSGVFNCGTGRAQPFNDVAAAVVNTLRAERGEAALPLAELVKKGLLRYI FT PFPDDLKGRYQSYTQADVSRLRATGFSAPMRDVQTGVSEYVRYWRALK" FT misc_feature 993543..994526 FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family" FT CDS 994660..995148 FT /transl_table=11 FT /locus_tag="BP0956" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria gonorrhoeae ComE TR:Q9EU10 FT (EMBL:AF268317) (99 aa) fasta scores: E(): 0.0033, 35.714% FT id in 84 aa, and to Xylella fastidiosa hypothetical protein FT Xf0593 xf0593 TR:Q9PFR4 (EMBL:AE003905) (109 aa) fasta FT scores: E(): 0.07, 34.524% id in 84 aa" FT /protein_id="CAE41258.1" FT /translation="MNPFLHDPVARCANAPAWPLVGRGRPWRPRPPGAAARAPAGKAPV FT GRKPASEPLARWLVMAGCALAAAPAHALDVNTATVDQLETVRGVGPRTARVIIEERQRG FT GRFLSLEDLSERVSGIGHKKMQSLQAAGLTAGPAAPAAGARPEARPAGGPRAKAAAGR" FT repeat_region 995145..995176 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 995145..996197 FT CDS 995247..996197 FT /transl_table=11 FT /locus_tag="BP0957" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41259.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 995505..995570 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 995628..996161 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(996166..996197) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 996278..997189 FT /transl_table=11 FT /gene="cysM" FT /locus_tag="BP0958" FT /product="cysteine synthase B" FT /EC_number="2.5.1.47" FT /note="Similar to Escherichia coli cysteine synthase B CysM FT or B2421 SW:CYSM_ECOLI (P16703) (303 aa) fasta scores: E(): FT 7.7e-67, 64.407% id in 295 aa, and to Pseudomonas FT aeruginosa cysteine synthase B CysM or Pa0932 TR:Q9I526 FT (EMBL:AE004527) (299 aa) fasta scores: E(): 2.2e-72, FT 67.442% id in 301 aa" FT /protein_id="CAE41260.1" FT /translation="MSTPTYPTIEQTVGNTPLVRLQRIPGAAGQARGNVILAKLEGNNP FT AGSVKDRPALSMILRAEERGEIHPGDTLIEATSGNTGIALAMTAAMRGYRMVLIMPDNL FT SLERRAAMTAYGAELILTPAAKGGMEYARDLATAMQAEGKGKVLDQFGNPDNPRAHIEG FT TGPEIWNQTDGRVTHFVSAMGTTGTIMGVSTYLKSRNAAVQVVGAQPAEGSQIPGIRKW FT PEAYMPKIFDRALVDAYESIAQAEGETMARRLAAEEGIFAGISSAGALVAALRVAERVE FT NATIVFIVCDRGDRYLSTGVFN" FT misc_feature 996302..997153 FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme" FT misc_feature 996392..996448 FT /note="ScanRegExp hit to PS00901, Cysteine FT synthase/cystathionine beta-synthase P-phosphate attachment FT site. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(997250..998395) FT /transl_table=11 FT /gene="mltB" FT /locus_tag="BP0959" FT /product="membrane-bound lytic murein transglycosylase B FT precursor" FT /EC_number="3.2.1.-" FT /note="Similar to Escherichia coli membrane-bound lytic FT murein transglycosylase B precursor MltB or B2701 FT SW:MLTB_ECOLI (P41052) (361 aa) fasta scores: E(): 4.8e-28, FT 35.696% id in 381 aa, and to Pseudomonas aeruginosa FT membrane-bound lytic transglycosylase precursor MltB FT TR:Q9X6V5 (EMBL:AF147448) (336 aa) fasta scores: E(): FT 5.8e-29, 39.172% id in 314 aa" FT /protein_id="CAE41261.1" FT /translation="MFNCRRFLQIGTLSALLAGCATSSQTPQAQHLPAQAATGQADRVR FT IGPDKPVSSDEGPATLTPTGELRPDVRAFAEQLAAQRELPLPQVLASLESTRYNATVAR FT LIAPSGASGKKIWRSWLTYRGRFVEPKRIAWGVEFWNANQDLLNRAAQRYGVPASIIAS FT IIGVETLYGRNVGNFRVVDALATLAFDYLDPAKPERADMFRGQLGDFITLALQDKLDPE FT TRGSYAGAIGMPQFMPGSIMRYAVDGDDDGHIDLTNSVADAVMSVGNFLVEHGWQRGLP FT VFAPVALPADPAPLVAGGLTPTLDWNGLQAAGARPAAGAGRGAWQEHPMGIVDLVEEAR FT GTVQYRTATPNFFALTQYNRSYFYATAVADLAAELQARTGY" FT misc_feature complement(998288..998395) FT /note="Signal peptide predicted for BP0959 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.694 between residues 36 and 37" FT misc_feature complement(998336..998368) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 998406..999329 FT /transl_table=11 FT /locus_tag="BP0960" FT /product="histone deacetylase family protein" FT /note="Similar to Neisseria meningitidis histone FT deacetylase family protein Nmb0605 TR:Q9K0J2 FT (EMBL:AE002416) (369 aa) fasta scores: E(): 2.4e-50, FT 44.156% id in 308 aa, and to Rhizobium meliloti conserved FT hypothetical protein Smc00969 TR:CAC45455 (EMBL:AL591785) FT (309 aa) fasta scores: E(): 9.7e-49, 45.192% id in 312 aa" FT /protein_id="CAE41262.1" FT /translation="METMYLTHPSCRLHEMGDWHPESPQRLDAISDQLLASGLLPYLQE FT RQAPEASRADILRVHTPAYLDSLRAHQPEHGYYAIDADTSMNRHTYEAALRAAGAGVAA FT VDAVLGGEAITAFCSVRPPGHHAERDHAMGFCFLNNVAIAARHALDFHGLQRVALVDFD FT VHHGNGTEHAFAGDPRVLMCSFFQHPFFPNSGADDPAPNMLNVPVAAYTGGASIRTIVR FT EQWLPRLHAHRPELILISAGFDAHREDDMAQMGLVEADYAWITDRLVEVADQHCQGRIV FT STLEGGYNLSALGRSVVAHIRSLSKL" FT misc_feature 998415..999323 FT /note="HMMPfam hit to PF00850, Histone deacetylase family" FT CDS 999401..1000150 FT /transl_table=11 FT /gene="etfB" FT /gene_synonym="etfS" FT /locus_tag="BP0961" FT /product="electron transfer flavoprotein beta-subunit" FT /note="Similar to Bradyrhizobium japonicum electron FT transfer flavoprotein beta-subunit EtfB or EtfS FT SW:ETFB_BRAJA (P53575) (249 aa) fasta scores: E(): 9.4e-59, FT 69.076% id in 249 aa, and to Pseudomonas aeruginosa FT electron transfer flavoprotein beta-subunit EtfB or Pa2952 FT TR:Q9HZP6 (EMBL:AE004721) (249 aa) fasta scores: E(): FT 3.5e-62, 74.297% id in 249 aa" FT /protein_id="CAE41263.1" FT /translation="MKVLVPVKRVVDYNVKVRVKSDQTGVDIANVKMSMNPFDEIAVEE FT ATRLKEKGAVTEVVAVSCGAAQCQETLRTAMAIGADRAVLVQTDAELQPLAVAKLLKAL FT VDKEQPQLVILGKQAIDDDANQTGQMLAALLDWPQATFASKVELGDGQVTVTREVDGGL FT ETLSLNLPAIVTTDLRLNEPRYVTLPNIMKAKKKPLETVSPQDLGVDPAPRLKTLKVSE FT PPARQAGIKVPDVATLVDKLKNEAKVV" FT misc_feature 999401..1000147 FT /note="HMMPfam hit to PF01012, Electron transfer FT flavoprotein beta subunit" FT misc_feature 999863..999925 FT /note="ScanRegExp hit to PS01065, Electron transfer FT flavoprotein beta-subunit signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 1000150..1001079 FT /transl_table=11 FT /gene="etfA" FT /gene_synonym="etfL" FT /locus_tag="BP0962" FT /product="electron transfer flavoprotein alpha-subunit" FT /note="Similar to Bradyrhizobium japonicum electron FT transfer flavoprotein alpha-subunit EtfA or EtfL FT SW:ETFA_BRAJA (P53573) (314 aa) fasta scores: E(): 4.3e-64, FT 68.065% id in 310 aa, and to Pseudomonas aeruginosa FT electron transfer flavoprotein alpha-subunit EtfA or Pa2951 FT TR:Q9HZP7 (EMBL:AE004721) (309 aa) fasta scores: E(): FT 2.5e-67, 70.550% id in 309 aa" FT /protein_id="CAE41264.1" FT /translation="MTTLVIAEHDNAQLKGATLNTIAAASRLGGEVHVLVAGSGAQAVA FT EQAAQAARVSKVLLADAPQLAEGLAENLAAQVLAVAGGYSHILFAATASGKNVAPRVAA FT KLDVAQISDIIGVESADTFQRPIYAGNAIATVQSGDAVKVITVRTTGFDAVAAQGGSAA FT VEALDAVADSGLSRFVGREVAKSDRPELAGARVVVSGGRGLGSAENFKILDPLADKLGA FT ALGASRAAVDAGYAPNDWQVGQTGKIVAPQLYVAVGISGAIQHLAGMKDSKVIVAINKD FT PEAPIFGVADYGLVGDLFQVVPELTGAL" FT misc_feature 1000153..1000968 FT /note="HMMPfam hit to PF00766, Electron transfer FT flavoprotein alpha subunit" FT misc_feature 1000906..1000986 FT /note="ScanRegExp hit to PS00696, Electron transfer FT flavoprotein alpha-subunit signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 1001323..1003149 FT /transl_table=11 FT /locus_tag="BP0964" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Rhizobium loti probable acyl-CoA FT dehydrogenase Mlr6975 TR:Q987P3 (EMBL:AP003010) (583 aa) FT fasta scores: E(): 2.9e-96, 50.984% id in 610 aa, and to FT Rhizobium meliloti putative acyl-CoA dehydrogenase protein FT Smc00977 TR:CAC45447 (EMBL:AL591785) (593 aa) fasta scores: FT E(): 1.2e-95, 48.571% id in 595 aa" FT /protein_id="CAE41265.1" FT /translation="MTYATPLQDFRFALNELAGLEEILKLPGFEEVTPDLVDAILEENA FT RFVQQAIAPLNVAGDTKPPVWNDGQVTTTPGFSQGFADYTAGGWQGLQHPQKWGGQGLP FT KVVAAPAGENIQAASLAFSLCPMLTDGVIEALLTVGSEAQRQTYVPKLIGGQWTGTMNL FT TEPQAGSDLAQVATRAVRQDDGSYRLSGQKIFITYGEHDLAENIIHLVLARTPDAPAGV FT KGISLFIVPKYLVNEDGSRGKRNDVWCASLEHKLGIHGSPTAVLLYGAGKGEVGEGAVG FT YLVGEANRGLEYMFIMMNAARYSVGQQGIGVSERAYQHAQAYARERVQGRAIEGSAAPV FT TIAHHPDVQRMLLTMRALTEAARAVSYVAAAAHDKGTHHPDAEVRARNRAFYEYLVPIV FT KGFSTESAVEVASLGIQVHGGMGFIEETGAAQHYRDARILPIYEGTTAIQANDLVGRKT FT LRDGGATAHASIAAMRDTLKAVAAEAQRADTADHTALRVLRDNFDQAIQSYEGAVEFIL FT AHAASNVRAVYSSSVPYLMLAGVVHGGWQMARAALACRRHLAAGSGDAFHRHKLGTALF FT YGAHILPRALALAAAVRAGDVADSCGSMADIA" FT misc_feature 1001740..1002018 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 1002076..1002687 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS 1003232..1003873 FT /transl_table=11 FT /locus_tag="BP0965" FT /product="antioxidant protein" FT /EC_number="3.1.1.-" FT /note="Similar to Mus musculus antioxidant protein 2 Aop2 FT or Ltw4 or Prdx5 SW:AOP2_MOUSE (O08709) (223 aa) fasta FT scores: E(): 1.3e-42, 55.605% id in 223 aa, and to FT Pseudomonas aeruginosa probable antioxidant protein Pa3450 FT TR:Q9HYF6 (EMBL:AE004765) (212 aa) fasta scores: E(): FT 6.9e-68, 79.048% id in 210 aa" FT /protein_id="CAE41266.1" FT /translation="MGQLRLGDTAPDFEQKSSIGPLRLYDYLGDSWGVLFSHPADFTPV FT CTTELGYTAKLAGEFAKRNVKVLALSVDPVDSHTKWIDDINDTQSTTVNFPILADDDRK FT VSELYDMIHPNANATLTVRSVFVIDPAKKVRLTITYPASTGRNFDEILRVIDSLQLTDS FT HSVATPVNWKDGEDVIIVPSLKDEAVIKEKFPKGYKALRPYLRITPQPNK" FT misc_feature 1003247..1003690 FT /note="HMMPfam hit to PF00578, AhpC/TSA family" FT CDS 1004063..1005097 FT /transl_table=11 FT /gene="sbp" FT /locus_tag="BP0966" FT /product="sulfate-binding protein precursor" FT /note="Similar to Escherichia coli sulfate-binding protein FT precursor Sbp or B3917 SW:SUBI_ECOLI (P06997) (329 aa) FT fasta scores: E(): 3.5e-85, 67.732% id in 313 aa, and to FT Enterobacter cloacae putative sulfur-binding protein SbP FT TR:Q9Z6C2 (EMBL:AF098509) (329 aa) fasta scores: E(): FT 5.5e-87, 68.889% id in 315 aa" FT /protein_id="CAE41267.1" FT /translation="MPRNTAGIRGAIVALATVFSLGLPWAVQAQDKQTLLNVSYDPTRE FT LYRAVDEAFIKEYQARAGVDLTVRQSHGGSGRQARSVIDGLDADVVTLALAYDIDAIAD FT RGLLPQDWQKRLPRNSSPYTSTIVFLVRKGNPRQIHDWDDLVKDGVQVITPNPKTSGGA FT RWNYLAAWAYALARNEGSEAKAREFVGQLLSHVPVLDTGARGSTTTFVERGVGDVLLAW FT ENEAFLAREELGPDKFDIVVPSLSILAEPPVAVVDKVVDRKGTRAAAQAYLEYLYTPAA FT QEIIARNFYRPTDAGVAAKYASRFPKLKLVTIDDPIFGGWRKAQKDHFSDGGTFDQVYQ FT PQRK" FT misc_feature 1004063..1004149 FT /note="Signal peptide predicted for BP0966 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.993) with cleavage site FT probability 0.970 between residues 29 and 30" FT misc_feature 1004078..1004146 FT /note="1 probable transmembrane helix predicted for BP0966 FT by TMHMM2.0 at aa 13-35" FT misc_feature 1004084..1005085 FT /note="HMMPfam hit to PF01100, Prokaryotic sulphate- and FT thiosulphate-binding protein" FT misc_feature 1004528..1004554 FT /note="ScanRegExp hit to PS00757, Prokaryotic FT sulfate-binding proteins signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT CDS join(1005113..1005319,1005323..1006018) FT /pseudo FT /transl_table=11 FT /gene="cysU" FT /gene_synonym="cysT" FT /locus_tag="BP0967" FT /product="sulfate transport system permease protein FT (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Escherichia coli sulfate transport FT system permease protein CysT or CysU or B2424 SW:CYST_ECOLI FT (P16701) (277 aa) fasta scores: E(): 4.5e-44, 49.638% id in FT 276 aa, and to Cucumis sativus hypothetical 31.4 kDa FT protein TR:Q9G4F7 (EMBL:AF285185) (296 aa) fasta scores: FT E(): 9.8e-79, 83.498% id in 303 aa" FT /db_xref="PSEUDO:CAE41268.1" FT variation 1005320..1005322 FT /note="TAG stop codon in pertussis; TGG in parapertussis FT and bronchiseptica" FT misc_feature 1005665..1005895 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 1005668..1005754 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS join(1006015..1006128,1006130..1006915) FT /pseudo FT /transl_table=11 FT /gene="cysW" FT /locus_tag="BP0968" FT /product="sulfate transport system permease protein FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 38. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli, FT and Escherichia coli O6 sulfate transport system permease FT protein cysw cysw or b2423 or c2957 SWALL:CYSW_ECOLI FT (SWALL:P16702) (291 aa) fasta scores: E(): 3.3e-55, 49.65% FT id in 286 aa" FT /db_xref="PSEUDO:CAE41269.1" FT variation 1006129..1006130 FT /note="(G)2 in pertussis; (G)1 in parapertussis and FT bronchiseptica" FT misc_feature join(1006214..1006282,1006325..1006393,1006430..1006498, FT 1006748..1006816) FT /note="4 probable transmembrane helices predicted for FT BP0968 by TMHMM2.0 at aa 28-50, 65-87, 100-122 and 206-228" FT misc_feature 1006514..1006750 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 1006517..1006603 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign." FT CDS 1006940..1008004 FT /transl_table=11 FT /gene="cysA" FT /locus_tag="BP0969" FT /product="sulfate transport ATP-binding protein" FT /note="Similar to Escherichia coli sulfate transport FT ATP-binding protein CysA or B2422 SW:CYSA_ECOLI (P16676) FT (365 aa) fasta scores: E(): 5.3e-56, 56.190% id in 315 aa, FT and to Cucumis sativus hypothetical 39.3 kDa protein FT TR:Q9G4F5 (EMBL:AF285185) (350 aa) fasta scores: E(): FT 7e-85, 88.929% id in 280 aa" FT /protein_id="CAE41270.1" FT /translation="MSIEVRGLSKRFGAFRALDEVSLHIETGELVALLGPSGCGKTTLL FT RIIAGLESADAGSVLFAGEDATEVDVRQRQVGFVFQHYALFKHMTVFENVAFGLRVRHR FT SQRPSEARIRAKVLDLLGLVQLDWLADRYPAQLSGGQRQRIALARALAVEPRVLLLDEP FT FGALDAKVRKELRRWLRRLHDELHVASVFVTHDQEEALEVTDRVVLMNAGRIEQVGSPR FT EVWERPATPFVYGFLGDVNQLHGHATRGVWRLGEVALPAPDLPEADNQRAIAYVRPHDI FT DLARAGTAAPGIPVRLNHVYLAGPSAYLELARQDDQAIIEAQVPEPLFRSLGLKEGEAL FT LAQPRRARVFAVQP" FT misc_feature 1007021..1007578 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 1007042..1007065 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1007348..1007392 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 1008001..1008051 FT /note="Signal peptide predicted for BP0970 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.951) with cleavage site FT probability 0.421 between residues 17 and 18" FT CDS join(1008004..1008744,1008747..1008752) FT /pseudo FT /transl_table=11 FT /gene="cysH" FT /locus_tag="BP0970" FT /product="phosphoadenosine phosphosulfate reductase FT (Pseudogene)" FT /EC_number="1.8.4.8" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 247. The sequence has been checked FT and believed to be correct. Similar to Burkholderia cepacia FT 5' adenylylsulfate Aps reductase CysH TR:Q9RFS6 FT (EMBL:AF170343) (250 aa) fasta scores: E(): 5.2e-56, FT 58.678% id in 242 aa, and to Rhizobium meliloti FT phosphoadenosine phosphosulfate reductase CysH or R00944 or FT Smc00092 SW:CYSH_RHIME (P56891) (265 aa) fasta scores: E(): FT 6.1e-41, 49.787% id in 235 aa" FT /db_xref="PSEUDO:CAE41271.1" FT misc_feature 1008115..1008711 FT /note="HMMPfam hit to PF01507, Phosphoadenosine FT phosphosulfate reductase family" FT variation 1008745 FT /note="(C)1 in pertussis; (C)2 in parapertussis and FT bronchiseptica" FT CDS 1008802..1009710 FT /transl_table=11 FT /gene="cysD" FT /locus_tag="BP0970A" FT /product="sulfate adenylyltransferase subunit 2" FT /EC_number="2.7.7.4" FT /note="Similar to Escherichia coli sulfate FT adenylyltransferase subunit 2 CysD or B2752 SW:CYSD_ECOLI FT (P21156) (302 aa) fasta scores: E(): 1.4e-47, 45.485% id in FT 299 aa, and to Neisseria meningitidis sulfate FT adenylyltransferase, subunit 2 Nmb1192 or nmb1154 TR:Q9JS34 FT (EMBL:AE002467) (307 aa) fasta scores: E(): 1.8e-90, FT 75.839% id in 298 aa" FT /protein_id="CAE41272.1" FT /translation="MSAVMTRSHLDWLESEAIFILREVAAECARPALLFSGGKDSVVLL FT RLAEKAFRPGRFPFPLLHIDTGHNYDEVISFRDARAAELGETLLVRSVEDSIARGSVAL FT RRETDSRNAAQAVTLLEAIEELGLDACIGGARRDEEKARAKERIFSFRDEFGQWDPKAQ FT RPELWNLFNTRVHRGENMWVFPISNWTELDVWQYIQRERLALPSIYYSHTREVVRRKGL FT LVPVTRLTPPAEGETVEQLAVRFRTVGDISCTCPVASDAADPAAIIAETAVTDITERGA FT TRMDDQTSEASMERRKREGYF" FT misc_feature 1008895..1009554 FT /note="HMMPfam hit to PF01507, Phosphoadenosine FT phosphosulfate reductase family" FT CDS join(1009763..1010140,1010146..1011009) FT /pseudo FT /transl_table=11 FT /gene="cysN" FT /locus_tag="BP0971" FT /product="sulfate adenylyltransferase subunit 1 FT (Pseudogene)" FT /EC_number="2.7.7.4" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 126. The frameshift occurs within FT a polymeric tract of (CGACG)3. The sequence has been FT checked and believed to be correct. Similar to Escherichia FT coli sulfate adenylyltransferase subunit 1 CysN or B2751 FT SW:CYSN_ECOLI (P23845) (475 aa) fasta scores: E(): 2e-50, FT 46.387% id in 429 aa, and to Pseudomonas aeruginosa FT CysN/CysC bifunctional enzyme [includes: sulfate FT adenylyltransferase subunit 1 CysNC or CysN or Pa4442 FT SW:CYSN_PSEAE (O50274) (633 aa) fasta scores: E(): 2.9e-56, FT 50.000% id in 420 aa" FT /db_xref="PSEUDO:CAE41273.1" FT misc_feature join(1009802..1010140,1010146..1010733) FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT misc_feature 1009829..1009852 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1009973..1010020 FT /note="ScanRegExp hit to PS00301, GTP-binding elongation FT factors signature." FT variation 1010140..1010154 FT /note="(CGACG)3 in pertussis; (CGACG)2 in parapertussis and FT bronchiseptica" FT variation 1010734..1010736 FT /note="57 bp deletion in pertussis relative to FT parapertussis and bronchiseptica following this codon" FT CDS 1011261..1012472 FT /transl_table=11 FT /locus_tag="BP0972" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0069 TR:Q9I763 (EMBL:AE004446) (352 aa) fasta FT scores: E(): 3.3e-66, 56.818% id in 308 aa, and to FT Rhizobium meliloti hypothetical protein Smc00866 FT TR:CAC45412 (EMBL:AL591785) (385 aa) fasta scores: E(): FT 6.7e-62, 45.170% id in 383 aa" FT /protein_id="CAE41274.1" FT /translation="MRGRGAVTNVPHRFQQADRVRVDDGWANPDYTAGSDAAALPSVAE FT ALGQGGRRAIPIAVEGADASPNTCAQAPAPRTIVQAEEARKMLSRNDSPDIPFDVAANP FT YRGCEHGCVYCYARPTHAYLGYSPGLDFETRLVAKANAVAALRAELARPGYRASPINIG FT SATDAYQPIERTWRLTRGMLELLLQTRHPLTVVTKNALVERDLDLLQDLARQKLVTVFV FT SITTLDAAMARTLEPRASAPYRRLQTVRTLAQAGVPVGVLVAPVIPFINDESLEHILQE FT ASAAGACYASYTVLRLPWEVKEVFETWLQAHFPDRAQRVLHRIEDLRNGRRNDTAFGSR FT MRGTGIWADLLRQRFALATRKLDLNRHRPELDTHRFVPPLEPGLPPARGRREARAQPGQ FT LALF" FT misc_feature 1011642..1012286 FT /note="HMMPfam hit to PF01932, Domain of unknown function FT DUF85" FT CDS 1012674..1013006 FT /transl_table=11 FT /locus_tag="BP0973" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE41275.1" FT /translation="MPGRTLGALRRLARAWAGAAVPQRKWPFPPTPPGQAQPCTPCTDS FT QPRSVQAVQPAQARALHAQAELSGAATQAATQVLSTKAKIIDVLLVAVWGAMIPALMWL FT GAAGGF" FT misc_feature 1012926..1012994 FT /note="1 probable transmembrane helix predicted for BP0973 FT by TMHMM2.0 at aa 101-123" FT CDS complement(1013014..1013886) FT /transl_table=11 FT /locus_tag="BP0974" FT /product="putative membrane protein" FT /note="Similar to Streptomyces coelicolor putative integral FT membrane protein Sce87.15C TR:Q9RKC3 (EMBL:AL132674) (281 FT aa) fasta scores: E(): 4.3e-14, 29.537% id in 281 aa, and FT to Rhizobium loti Mll3062 protein Mll3062 TR:Q98H24 FT (EMBL:AP003001) (281 aa) fasta scores: E(): 1.9e-18, FT 31.849% id in 292 aa" FT /protein_id="CAE41276.1" FT /translation="MSYTSLILVVLAAMAHAAWNLLAKRAAMVGPMFVFAYGLAATILY FT APWVIWVLAHDGMVWSWPVVLCILASSMLHLGYSLCLQRGYQVADLSVVYPIARGTGPL FT LSTMGAFTLLSEPTTTTGIAGMLCVVGGVLLIATQGRLGMFRQAQAWIGVRWGVVIGLF FT IAAYTVVDAYGVKILLIMPVLFDWFTCATRTLMMTPHVLRRRAQYWPAMRGYWHLAIAV FT GVLSPLGYILVLYALRNGAPLSLVAPAREMSMMLGTLAGMFLLREKVGIGRLAGCLAIL FT AGVVLLGSS" FT misc_feature complement(join(1013023..1013079,1013176..1013241, FT 1013281..1013346,1013377..1013430,1013452..1013517, FT 1013548..1013613,1013650..1013715,1013731..1013796, FT 1013818..1013874)) FT /note="9 probable transmembrane helices predicted for FT BP0974 by TMHMM2.0 at aa 4-23, 30-52, 57-79, 91-113, FT 123-145, 152-170, 180-202, 215-237 and 269-288" FT misc_feature complement(1013473..1013847) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature complement(1013836..1013886) FT /note="Signal peptide predicted for BP0974 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.888 between residues 17 and 18" FT CDS 1014192..1014572 FT /transl_table=11 FT /gene="rplS" FT /locus_tag="BP0975" FT /product="50S ribosomal protein L19" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L19 RplS or B2606 or Z3900 or Ecs3469 SW:RL19_ECOLI FT (P02420) (114 aa) fasta scores: E(): 4.2e-23, 64.103% id in FT 117 aa, and to Neisseria meningitidis 50S ribosomal protein FT L19 RplS or Nmb0589 SW:RL19_NEIMB (Q9K0K5) (121 aa) fasta FT scores: E(): 5.8e-31, 77.049% id in 122 aa" FT /protein_id="CAE41277.1" FT /translation="MNLIAILEQEEIARLTGGNAVTEFAPGDTVVVSVNVVEGTRKRVQ FT AFEGVVIAKRNRGLNSSFIVRKISSGEAVERTFQLYSPQIAGIEVKRRGDVRRAKLYYL FT RSRSGKSARIKEKLVLKKAKSA" FT misc_feature 1014192..1014545 FT /note="HMMPfam hit to PF01245, Ribosomal protein L19" FT misc_feature 1014459..1014506 FT /note="ScanRegExp hit to PS01015, Ribosomal protein L19 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 1014843..1015508 FT /transl_table=11 FT /locus_tag="BP0976" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus MutT/NudiX family FT protein Cc0407 TR:Q9AB27 (EMBL:AE005713) (216 aa) fasta FT scores: E(): 6.1e-27, 47.959% id in 196 aa, and to FT Rhizobium loti Mll2727 protein mll2727 TR:Q98HS8 FT (EMBL:AP003000) (204 aa) fasta scores: E(): 4e-24, 42.640% FT id in 197 aa" FT /protein_id="CAE41278.1" FT /translation="MAQPWETANQGLARVDERLLTPPELRSSLRPADHWRLDPLCAAEP FT RAPGREGSLVAAAVLIPLVMRADGVRVMLTQRAAHLHDHAGQVSFPGGRIEVSDATPVA FT AALREAQEETGLPVQQVEVLGSMPQYFTATGFAITPVVSLVQPDFELAPDAFEVAEVFE FT VPLSFLMDPANHRLYRAALPDGYVRQYYAMPWQRYFIWGATAGMLRNLYQTVREALPG" FT misc_feature 1014999..1015394 FT /note="HMMPfam hit to PF00293, MutT-like domain" FT CDS 1015610..1016659 FT /transl_table=11 FT /locus_tag="BP0977" FT /product="probable oxidoreductase" FT /note="Similar to Pseudomonas aeruginosa probable FT oxidoreductase Pa4434 TR:Q9HVY1 (EMBL:AE004857) (345 aa) FT fasta scores: E(): 1.1e-83, 61.318% id in 349 aa, and to FT Vibrio cholerae oxidoreductase Tas, aldo/keto reductase FT family Vc0667 TR:Q9KU57 (EMBL:AE004153) (352 aa) fasta FT scores: E(): 1.6e-81, 60.172% id in 349 aa" FT /protein_id="CAE41279.1" FT /translation="MKYRKLGHTDLDVSLIGLGTMTWGEQNTEAQAHEQLDYALAHGIN FT LVDAAEMYPVPPKPETQGRTESCIGSWLARTGRRHEVVLASKAAGPVRDAKRPSHIRDG FT KTFLDRKNLTQALDASLKRLQTDYLDLYQLHWPDRTTNTFGKLAYPWVDDAHTVPIEET FT LEVLQDFVRAGKVRHVGLSNETPWGVARFLQAAEKHGLPKVATIQNPYNLLNRIFEIGL FT AEFSHREGVGLLAYSPLAMGILSGKYLDGARPEGSRLALFTRFTRYSNPQAEAAARDYV FT MLARDHGLAPAQMALAWVNQRPFVSSNLMGATTLAQLKENIESVEVTLSDEVLQGIEAI FT HARQPNPAP" FT misc_feature 1015925..1016158 FT /note="HMMPfam hit to PF00248, Aldo/keto reductase family" FT repeat_region complement(1016768..1017998) FT /note="Insertion sequence" FT CDS complement(1016797..>1017843) FT /transl_table=11 FT /locus_tag="BP0978" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein chnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /protein_id="CAE41280.1" FT /translation="DPVCTRQVGAVADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEA FT DKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVN FT PAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSK FT DLLRELNRKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCEL FT LNSIPAIGPQAGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPS FT QVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPY FT QPNYAMNG" FT misc_feature complement(1016929..1017261) FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT misc_feature complement(1017274..1017561) FT /note="HMMPfam hit to PF01548, Transposase" FT CDS complement(join(1018070..1018276,1018278..1019255)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0980" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 326. The sequence has been checked FT and believed to be correct. Similar to Rhizobium loti FT Mlr8412 protein Mlr8412 TR:Q983A8 (EMBL:AP003014) (405 aa) FT fasta scores: E(): 9.4e-56, 46.053% id in 380 aa, and to FT Agrobacterium tumefaciens Agr_c_2168p TR:AAK86976 FT (EMBL:AE008046) (407 aa) fasta scores: E(): 5.8e-51, FT 42.440% id in 377 aa. Also similar to BP2600, 49.746% FT identity in 394 aa overlap." FT /db_xref="PSEUDO:CAE41281.1" FT variation complement(1018277) FT /note="frameshift (A) in pertussis and parapertussis; no FT frameshift (-) in bronchiseptica" FT CDS complement(1019322..1019894) FT /transl_table=11 FT /locus_tag="BP0981" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5357 TR:Q9HTK1 (EMBL:AE004947) (178 aa) fasta FT scores: E(): 3.5, 35.519% id in 183 aa, and to Pseudomonas FT putida hypothetical 20.6 kDa protein TR:Q9FD32 FT (EMBL:AF292094) (182 aa) fasta scores: E(): 2.3, 34.884% id FT in 172 aa" FT /protein_id="CAE41282.1" FT /translation="MTTPIPLARGWLPAAPSTLDPLRKYWLFRPGALTAGLRQLGHVRL FT RVLAEYPTGAPRDEADGMRIAAQSPVWVREVLMSIDGVDSVVARSLTPLRASHGVWQGM FT RRLLTRPLADMLYHDPGIHRSVFVCRRLAAGVPFHATAIARAPAGGPEPALWARRSAFW FT RAGQPLLVAECFLPAFWSLARAPVAPR" FT CDS 1019954..1020685 FT /transl_table=11 FT /locus_tag="BP0982" FT /product="putative RNA pseudouridylate synthase" FT /note="Similar to Caulobacter crescentus RNA FT pseudouridylate synthase, putative Cc0855 TR:Q9A9V6 FT (EMBL:AE005762) (255 aa) fasta scores: E(): 5.2e-38, FT 49.587% id in 242 aa, and to Neisseria meningitidis FT putative RNA-binding protein Nma1016 TR:Q9JV32 FT (EMBL:AL162754) (252 aa) fasta scores: E(): 1e-57, 66.116% FT id in 242 aa" FT /protein_id="CAE41283.1" FT /translation="MEKVRISKLMSERGLCSRREADSYIERGWVRVDGVVVSELGARAL FT PDQVITLERAAAARQTARVTILLHKPVGYVSGQAEKGYTPAVALIDARSRYAGDRAPQR FT FERGQLQGLAVAGRLDIDSQGLLVLTQDGRIAKKLIGEDSEVDKEYLVRVQGRLSEAGL FT ALLNHGLSLDGKPLRPAQVRWQNADQLRFVLREGKKRQIRRMCELVGLRVVGLKRVRIG FT RVSLGDLPAGQWRYLRADERF" FT misc_feature 1019963..1020103 FT /note="HMMPfam hit to PF01479, S4 domain" FT misc_feature 1020143..1020577 FT /note="HMMPfam hit to PF00849, RNA pseudouridylate FT synthase" FT CDS complement(1020737..1021672) FT /transl_table=11 FT /locus_tag="BP0983" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative LysR-family FT transcriptional regulator Sma1602 TR:AAK65531 FT (EMBL:AE007274) (302 aa) fasta scores: E(): 3.4e-51, FT 51.020% id in 294 aa, and to Pseudomonas aeruginosa FT probable transcriptional regulator Pa3135 TR:Q9HZ90 FT (EMBL:AE004737) (306 aa) fasta scores: E(): 4.3e-30, FT 39.322% id in 295 aa" FT /protein_id="CAE41284.1" FT /translation="MNRLQGMELFVEVARTLSFGRAAENLAIPKSTLSRQVAELERSVG FT LRLLSRTTRRVELTEAGQLYFERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGT FT DFLSEAFTEFSRRYPEVTFYLDLASPEHAERVFQTCDVSIEIGDLPDSTHIARLLGVLP FT AHLYASPDYLARHGEPQHPDDLPRHECIQFRAGTGRVTRWPLNSGERHVEITPGNRFSV FT NSVSMVRNLATLGAGIAILAPMGNVREDIESGRLKRILPDWLAGPFPVYAVTDTRMLPA FT KTRIFVEFLMERLSNKTLAGQNNPAFLNLR" FT misc_feature complement(1021241..1021663) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(1021529..1021621) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(1021559..1021624) FT /note="Predicted helix-turn-helix motif with score 1228 FT (+3.37 SD) at aa 17-38, sequence LSFGRAAENLAIPKSTLSRQVA" FT misc_feature complement(1021589..1021636) FT /note="ScanRegExp hit to PS00063, Aldo/keto reductase FT family putative active site signature." FT CDS 1021905..1022504 FT /pseudo FT /transl_table=11 FT /gene="acrA" FT /gene_synonym="mtcA" FT /gene_synonym="lir" FT /locus_tag="BP0984" FT /product="acriflavine resistance protein a precursor FT (Pseudogene)" FT /note="Pseudogene. This CDS contains a large deletion, FT following codon 158, relative to B. parapertussis and B. FT bronchiseptica. The sequence has been checked and believed FT to be correct. Similar to Escherichia coli acriflavine FT resistance protein A precursor AcrA or MtcA or LiR or B0463 FT or Z0578 or Ecs0516 SW:ACRA_ECOLI (P31223) (397 aa) fasta FT scores: E(): 5.8e-23, 52.318% id in 151 aa, and to FT Caulobacter crescentus HlyD family secretion protein Cc0808 FT TR:Q9AA03 (EMBL:AE005757) (388 aa) fasta scores: E(): FT 1.3e-23, 55.556% id in 153 aa" FT /db_xref="PSEUDO:CAE41285.1" FT variation 1022376..1022378 FT /note="large deletion in pertussis relative to FT parapertussis and bronchiseptica following this codon" FT CDS 1022462..1025641 FT /transl_table=11 FT /gene="acrB" FT /gene_synonym="acrE" FT /locus_tag="BP0985" FT /product="acriflavine resistance protein B" FT /note="Similar to Escherichia coli acriflavine resistance FT protein B AcrB or AcrE or B0462 SW:ACRB_ECOLI (P31224) FT (1049 aa) fasta scores: E(): 0, 67.143% id in 1050 aa, and FT to Pseudomonas aeruginosa multidrug resistance protein MexB FT or Pa0426 SW:MEXB_PSEAE (P52002) (1046 aa) fasta scores: FT E(): 0, 71.539% id in 1033 aa" FT /protein_id="CAE41286.1" FT /translation="MAKFFIDRPVFAWVIAIVLMMAGALSILSLPVAQYPNIAPPAISI FT NVTYPGASAQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQ FT VQVQNKLAVAQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQ FT DPISRTPGVGNFQLFGAPYAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQ FT PAVRGQQLNATVIGPSRLQTPEAFGRILLKVNRDGSQVRLKDVASIELGAQTYAIDSYY FT NGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEGV FT VKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV FT LAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMGQITGALIGIAMVLAAVFVPMAF FT FGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGWFNR FT TFERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQ FT APAGATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNE FT RKGAEHRAAAVAARANAKFRAELRDAQAAVFAPPAVMELGNATGFDFQLQDRAGVGHEK FT LLAARNQLLQEAGASPMLVAVRPNGIEDAPQYQLDIDREKARALGVSITEINNTLATAW FT GSSYVNDFIDRGRVKKVFVQGEASSRMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGP FT QKLNRYNGVPSYNIQGQAAPGYSSGDAMAEMERLADKLPLGIGYDWTGLSFEERLSGAQ FT APALYAISLIVVFLCLAALYESWSIPTAVMLVVPLGVVGALLATMTRGLSNDVYFQVGL FT LTTIGLAAKNAILIVEFAKEHYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAI FT STGAGSGSQNAIGTGVIGGMLTGTFLAIFFVPLFFVLTLRLFKVKRASENREDDDPHGG FT AQPATHGGQPQ" FT misc_feature 1022462..1022563 FT /note="Signal peptide predicted for BP0985 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.961) with cleavage site FT probability 0.721 between residues 34 and 35" FT misc_feature 1022462..1025545 FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family" FT misc_feature join(1022498..1022566,1023470..1023538,1023557..1023625, FT 1023635..1023703,1023773..1023841,1023869..1023937, FT 1024079..1024147,1025066..1025134,1025153..1025221, FT 1025234..1025302,1025375..1025443,1025471..1025539) FT /note="12 probable transmembrane helices predicted for FT BP0985 by TMHMM2.0 at aa 13-35, 337-359, 366-388, 392-414, FT 438-460, 470-492, 540-562, 869-891, 898-920, 925-947, FT 972-994 and 1004-1026" FT CDS 1025638..1027020 FT /transl_table=11 FT /gene="cusC" FT /gene_synonym="ibeB" FT /locus_tag="BP0986" FT /product="probable outer membrane lipoprotein" FT /note="Similar to Escherichia coli probable outer membrane FT lipoprotein CusC precursor CusC or IbeB or B0572 FT SW:CUSC_ECOLI (P77211) (457 aa) fasta scores: E(): 4.9e-38, FT 39.655% id in 464 aa, and to Pseudomonas aeruginosa outer FT membrane protein OprM precursor OprM or OprK or Pa0427 FT SW:OPRM_PSEAE (Q51487) (485 aa) fasta scores: E(): 5.3e-67, FT 55.717% id in 481 aa" FT /protein_id="CAE41287.1" FT /translation="MKPVVMRTLLSLAVATALAGCSLAPTYERPQAPVDAAYPSGPAYG FT APGQAAAGAPAAADVGWRDFFGDPLLQELLALSLANNRDLRVAALNVEAARLNPSGQAG FT ISRSYQVGASLSTWELDLFGRIRSLSEQALQLYLAQDETRLATQLTLVAETANAYPTLR FT ADQELLALTRQTLAAQQESYKLTRQSYDLGVATELDLSQAEISLRTAERNLSQYTRMAA FT QDRNALVLLVGQPLPAGIGAQLDQAVALPDGVVLADLPAGLPSDLLARRPDIRAAEHQL FT QAANASIGAARAAFFPRISLTGSAGTASASLGGLFDAGSGAWSFAPQISVPIFAGGALR FT ASLDLAKIQKDIGIARYEQAIQSGFREVSDALAGRGTLQEQIRSQELLVQANQRAYDLS FT QQRYQQGIDNYLSVLDSQRSLYTAQQTLVETRLARLSNLIQLYKALGGGWSERTVAAAQ FT AG" FT misc_feature 1025638..1025709 FT /note="Signal peptide predicted for BP0986 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.604 between residues 24 and 25" FT misc_feature 1025668..1025700 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 1025848..1026369 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT misc_feature 1026415..1027008 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT CDS complement(1027090..1027341) FT /transl_table=11 FT /locus_tag="BP0987" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Sma1766 TR:AAK65633 (EMBL:AE007284) (83 aa) fasta scores: FT E(): 3.7e-12, 52.439% id in 82 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa5424 TR:Q9HTE0 FT (EMBL:AE004955) (81 aa) fasta scores: E(): 2.6e-11, 51.250% FT id in 80 aa" FT /protein_id="CAE41288.1" FT /translation="MNIIIMIIVGFVVGLITRAIMPGDQNMGYIMTTILGIIGSVVAGF FT LGQQLGWYAPGEPAGWIGSVVGAIIVLFVVGLVAKKRA" FT misc_feature complement(join(1027105..1027161,1027192..1027257, FT 1027279..1027344)) FT /note="3 probable transmembrane helices predicted for FT BP0987 by TMHMM2.0 at aa 24-46, 53-75 and 85-104" FT CDS complement(1027487..1028101) FT /transl_table=11 FT /locus_tag="BP0988" FT /product="putative exported protein" FT /note="Similar to Neisseria meningitidis putative FT lipoprotein Nma1767 TR:Q9JTI0 (EMBL:AL162757) (217 aa) FT fasta scores: E(): 1.6e-19, 39.490% id in 157 aa, and to FT Caulobacter crescentus Sco1/2 family protein Cc3503 FT TR:Q9A2Q3 (EMBL:AE006008) (190 aa) fasta scores: E(): FT 6.8e-18, 37.173% id in 191 aa" FT /protein_id="CAE41289.1" FT /translation="MYSPLSGRAWRGLLLAMLMLLAACSERSADWSLYNVKGHLPDLKF FT SLPGAHGKTVSSDDLKGKTVLLFFGYASCPDVCPTTMAQLTAVLQQLGEQARDVRILFV FT SVDPHRDTPDILQAYVNEFNSNAIGVTGNEKQIADLARRYRVAYQIEKPKPGDDADIYD FT VTHSRGVYIFDNQGKARLLASDTDTIDTMVKDLRQLIAQTQ" FT misc_feature complement(1027541..1028065) FT /note="HMMPfam hit to PF02630, SCO1/SenC" FT misc_feature complement(1028015..1028101) FT /note="Signal peptide predicted for BP0988 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.749 between residues 29 and 30" FT misc_feature complement(1028030..1028062) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(1028288..1030348) FT /transl_table=11 FT /gene="prlC" FT /gene_synonym="opdA" FT /locus_tag="BP0989" FT /product="oligopeptidase A" FT /EC_number="3.4.24.70" FT /note="Similar to Escherichia coli oligopeptidase A PrlC or FT OpdA or B3498 SW:OPDA_ECOLI (P27298) (680 aa) fasta scores: FT E(): 7.2e-123, 46.009% id in 689 aa, and to Xylella FT fastidiosa oligopeptidase A Xf0127 TR:Q9PH19 FT (EMBL:AE003866) (674 aa) fasta scores: E(): 2.1e-134, FT 54.839% id in 682 aa" FT /protein_id="CAE41290.1" FT /translation="MTQNPLLAPVADLVDYAAVKPEHIVPAVQALVDIARAAVEHAADP FT ALPATWDAVVAPLDSASERLWRAWSVAGHLNAVVNTPVLREAYNAALPLVTEFSTWVGL FT HEGLYRQYQRLQAAEDFAAWPPVRRRVVELALRDFRLSGVELQGAARERYAEISDREAQ FT ASQKFSENVLDAIDAWSLLVDDQARLDGIPADVLAAARKAAEDDGATGWKLTLKMPCYL FT PVMQYARDRALRETLYRAYGTVASEHGDAAYDNSPLIEELLQLRADEAGLLQYPTFAAL FT RLQTRMARDATEVVDFLRDLARRAKPYAERDLAELQAFAAGELGLAELQPWDVPFAAER FT LRESRYAYSEDEIKQYFTEPRVLAGLFEVIETLFDVRLREVPVSSWHADVRGVRVESPD FT GATLGHLYLDLYARAGKQSGAWVDSERSRRRVQGDLQTPVAYLTCNFSRPNGDKAALLT FT HDDVITLFHETGHALHALLSEVDEPGAAAFASVEWDAIELPSQFMENFCWEWSVVQKLS FT AHVETGQPLPRDLYDRLVAARNFQSGMQTVRQIEFALFDMMLHDRPQGAPIADVLALLQ FT QVRQEVAVLFPPAWHRLPHSFSHLFAGGYGAGYYSYKWAEVLSADAYEAFEEAARQGEP FT AATTLDGATGARFRKEILAVGGARPAADSFRAFRGREPRIDALLRHSGMQA" FT misc_feature complement(1028297..1030189) FT /note="HMMPfam hit to PF01432, Peptidase family M3" FT CDS complement(1030478..1031329) FT /transl_table=11 FT /gene="folD" FT /gene_synonym="ads" FT /locus_tag="BP0990" FT /product="FolD bifunctional protein [includes: FT methylenetetrahydrofolate dehydrogenase and FT methylenetetrahydrofolate cyclohydrolase]" FT /EC_number="1.5.1.5" FT /note="Similar to Escherichia coli FolD bifunctional FT protein [includes: methylenetetrahydrofolate dehydrogenase FT and methylenetetrahydrofolate cyclohydrolas] FolD or Ads or FT B0529 SW:FOLD_ECOLI (P24186) (287 aa) fasta scores: E(): FT 5.3e-50, 54.348% id in 276 aa, and to Bacillus halodurans FT methylenetetrahydrofolate dehydrogenase Fold or Bh2784 FT TR:Q9K966 (EMBL:AP001516) (279 aa) fasta scores: E(): FT 9.4e-56, 55.197% id in 279 aa. Also highly similar to FT BP2522, 76.241% identity in 282 aa overlap." FT /protein_id="CAE41291.1" FT /translation="MTARIIDGAALSQRIREEVAQRVQALTAKGVRPGLAVVLVGDDPA FT SQVYVRNKVAACEKAGLHSVKEQYPADLTEAQLLERIDALNRDPSIHGILVQLPLPRHM FT DAHKVIEAIAAEKDVDGFHISNAGLLMTGQPLFRPCTPYGVMKMLESEGVALRGAEAVI FT VGASNIVGKPMAMLLLQAGATITICNSKTRDLGAQTRRADVLVVATGKPGMIDGSMIKP FT GAVVIDVGINRGADGKLCGDVDMASAREVAGAISPVPGGVGPMTIAMLLVNTVEAAERA FT AA" FT misc_feature complement(1030496..1031287) FT /note="HMMPfam hit to PF00763, Tetrahydrofolate FT dehydrogenase/cyclohydrolase, catalytic domain" FT misc_feature complement(1030529..1030555) FT /note="ScanRegExp hit to PS00767, Tetrahydrofolate FT dehydrogenase/cyclohydrolase signature 2. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(1031030..1031107) FT /note="ScanRegExp hit to PS00766, Tetrahydrofolate FT dehydrogenase/cyclohydrolase signature 1. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(1031326..1031952) FT /transl_table=11 FT /locus_tag="BP0991" FT /product="two-component response regulator" FT /note="Similar to Bradyrhizobium japonicum transcriptional FT regulatory protein FixJ SW:FIXJ_BRAJA (P23221) (205 aa) FT fasta scores: E(): 3e-26, 41.146% id in 192 aa, and to FT Pseudomonas sp transcriptional activator StdR TR:O50213 FT (EMBL:AF031161) (207 aa) fasta scores: E(): 1.2e-27, FT 47.644% id in 191 aa" FT /protein_id="CAE41292.1" FT /translation="MNTPHLSSTVFIVDDDEAVRDSLRWLLEANGYRVRAYASGENFLD FT EYDASQIGVLIADVRMPGMSGLELQEQLIARNAPLPIVFITGHGDVPMAVSTMKKGAVD FT FLEKPFNESDLREIVARMLEQAVQRISKFQAQKDHEAMLARLTAREQQVLERIVAGRLN FT KQIADDLGISIKTVEAHRANIMEKLEVTTVADLMKVALAKPEAHT" FT misc_feature complement(1031329..1031526) FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family" FT misc_feature complement(1031392..1031475) FT /note="ScanRegExp hit to PS00622, Bacterial regulatory FT proteins, luxR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(1031596..1031931) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS complement(1031949..1033703) FT /transl_table=11 FT /locus_tag="BP0992" FT /product="tw-component sensor kinase" FT /note="Similar to Azorhizobium caulinodans sensor protein FT FixL SW:FIXL_AZOCA (P26489) (504 aa) fasta scores: E(): FT 1.7e-37, 47.893% id in 261 aa, and to Caulobacter FT crescentus sensory box histidine kinase FixL Cc0759 FT TR:Q9AA47 (EMBL:AE005751) (504 aa) fasta scores: E(): FT 2.4e-35, 45.059% id in 253 aa" FT /protein_id="CAE41293.1" FT /translation="MSSPPKSNIPMSFRDHARARRRGVYWLTPALVLVLYICVMGVFFW FT LQRIHDDSVMFVTIDQELRQQRLIWVVLALSCVIVISLLMLWRYTRFRSEAEAALIAET FT GFRRAMENSMSTGMRVLDMEGRIAYVNPAFCRMIGWNEADLIGRSPPFPYWVPGRHDQH FT QHTLEVLTSGKTPSSGLEVEAQRRDGSRFTARMYVSPLLDPNGDQIGWMTSMTDITEPK FT RIREALTAAHERFMTVLEGLDDAISVTADTHDGLELLFANRTYRRVFGAQTGGHDELLA FT GRRGRFTDESVEVFAPSVQRWFEVHHRMLAWTDGRRVRMQVARDITERRVHEEASRVQQ FT EKIQLTSRLTTMGEMASSLAHELNQPLTAIANYSMGAVALVKAGHTSPNMLLPALEKAA FT SQAERAGKIISRIREFVKRSEPRRQRVAISRIVDNAIGFAEIDARKRRIRIERFVPSNA FT PDVLADPILIEQVLLNLLKNGLEAMEKSESDELKVAVIPHEQHIEVAVVDRGHGLPEPE FT RLFEPFFSTKSQGLGMGLNICRTIIESHHGRLWADPNPAGGTIFRFTLPCATPQSQAQN FT DQSEELHA" FT misc_feature complement(1031997..1032317) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature complement(1032441..1032653) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT misc_feature complement(1032894..1033007) FT /note="HMMPfam hit to PF00989, PAS domain" FT misc_feature complement(1033041..1033169) FT /note="HMMPfam hit to PF00785, PAC motif" FT misc_feature complement(1033194..1033391) FT /note="HMMPfam hit to PF00989, PAS domain" FT misc_feature complement(join(1033437..1033502,1033566..1033631)) FT /note="2 probable transmembrane helices predicted for FT BP0992 by TMHMM2.0 at aa 24-46 and 67-89" FT CDS 1033996..1036701 FT /transl_table=11 FT /gene="aceE" FT /locus_tag="BP0993" FT /product="pyruvate dehydrogenase E1 component" FT /EC_number="1.2.4.1" FT /note="Similar to Escherichia coli pyruvate dehydrogenase FT E1 component AceE or B0114 or Z0124 or Ecs0118 FT SW:ODP1_ECOLI (P06958) (886 aa) fasta scores: E(): 0, FT 60.787% id in 890 aa, and to Alcaligenes eutrophus pyruvate FT dehydrogenase E1 component PdhA SW:ODP1_ALCEU (Q59097) (895 FT aa) fasta scores: E(): 0, 65.286% id in 893 aa. Also FT similar to BP1121, 54.711% identity (56.243% ungapped) in FT 881 aa overlap." FT /protein_id="CAE41294.1" FT /translation="MSSFAQAGALAAANDEDTLETQEWLEALAAVLDREGPQRAHYLLE FT RLIDEARRSGAHIPFSPNTAYVNTIPPGLEPAHPGNLELEARIRSYVRWNAMAMVVRAN FT KHNPPDGGDLGGHIASFASLATMIGCGQNHFWHGETEEHGGDLVYFQGHTSPGMYGRAY FT LEGRLTEDQLNHFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPLMAIYQARFLKYL FT HARGIADTSNRKVWVFCGDGEMDEPESLGAIALAAREKLDNLIFVINCNLQRLDGPVRG FT NGKIIQELEGDFRGSGWNVIKLIWGGYWDPLLAHDKEGILRRIMEEAVDGEYQAYKAND FT GKYVREHFFGKHPKLLEMVARMSDEDIWRLNRGGHDPHKVYAAFDAASKHAGQPTVILA FT KTIKGYGMGHVGQAKNPTHQQKKLELDSIREFRDRFGIPIPDDKLEELPYYKPAEDSPE FT MQYLHERRKALGGYLPKRRAKADEQLKAPALDAFKAVLEPTAEGREISTTQAFVRVLNQ FT VLRDKDLGPRVVPILADESRTFGMEGLFRQIGIYAPEGQKYTPVDKDQVMYYKESADGQ FT LLQEGINEAGAMSSWMAAATSYSTNNRIMVPFYIYYSMFGFQRVGDLAWAAGDMQARGF FT LLGGTAGRTTLNGEGLQHEDGHSHLLASTIPNCVSYDPTFAHELAVIIQHGLKRMVEDQ FT ENVYYYLTVMNENYPQPGLTAGDEEGIIRGMYKLKSHGKGKQRVQLMGSGTILCEVMAA FT QELLEADWGVASDIWSVTSFTELRRDGLDAERHNLLHPEGKQQVPYVTTQLAKSDGPII FT ASTDYMKLFADQIRPFVPKDRTYKVLGTDGFGRSDFRYKLREHFEVDRHFVVLASLRAL FT ADEGKIPAAKVAEAIKKYGINPNKANPHHA" FT misc_feature 1035112..1035213 FT /note="HMMPfam hit to PF00456, Transketolase, thiamine FT diphosphate binding domain" FT CDS 1036714..1038375 FT /transl_table=11 FT /gene="aceF" FT /locus_tag="BP0994" FT /product="dihydrolipoamide acetyltransferase component of FT pyruvate dehydrogenase complex" FT /EC_number="2.3.1.12" FT /note="Similar to Escherichia coli dihydrolipoamide FT acetyltransferase component of pyruvate dehydrogenase FT complex AceF or B0115 SW:ODP2_ECOLI (P06959) (629 aa) fasta FT scores: E(): 1.9e-69, 56.835% id in 556 aa, and to FT Alcaligenes eutrophus dihydrolipoamide acetyltransferase FT component of pyruvate dehydrogenase complex PdhB FT SW:ODP2_ALCEU (Q59098) (553 aa) fasta scores: E(): 1.2e-81, FT 63.636% id in 572 aa" FT /protein_id="CAE41295.1" FT /translation="MSNIVEIKVPDIGDFKEVEVIEVLVSAGDTIKAEQSLITVESDKA FT SMEIPASAAGVVKSVKVKVGDKIAEGTVILEVEAAGEAAAAPKAEAPKAEAPKAEQAAE FT TPKADAAKAEAPQAQAAQAEAPAAAGPIEVKVPDIGDFKEVEVIEVLVAEGDTIKAEQS FT LITVESDKASMEIPASAGGVVQSLKVKVGDKVAMGTVIAVVQGQGAAAAPAAAEPAAPA FT SPVAPASAPAQRPAPAAALQDEDLKPGQLPHASPSVRKFARELGVNLSRVTGSAAKGRI FT TADDVRAYVKQALSAGAPAGASGGGDGAALGLLPWPKIDFTKFGPIEAKPLSRIKKISG FT ANLHRNWVMIPHVTNNDEADITDLEALRVALNKENEKSGVKVTMLAFLIKAVVAALKKF FT PEFNASLDGDNLVLKQYYHIGFAADTPNGLVVPVVRDADKKGILELARETSELARKARE FT GKASPAEMQGGCFSISSLGGIGGTHFTPIINAPEVAILGVSRSAHKPVWDGKQFVPRLT FT LPLSLSYDHRVIDGASAARFNAYLGQLLVDFRRIAL" FT misc_feature 1036726..1036944 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme" FT misc_feature 1036795..1036884 FT /note="ScanRegExp hit to PS00189, 2-oxo acid dehydrogenases FT acyltransferase component lipoyl binding site. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 1037107..1037325 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme" FT misc_feature 1037176..1037265 FT /note="ScanRegExp hit to PS00189, 2-oxo acid dehydrogenases FT acyltransferase component lipoyl binding site. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 1037719..1038372 FT /note="HMMPfam hit to PF00198, 2-oxo acid dehydrogenases FT acyltransferase (catalytic domain)" FT CDS 1038388..1040178 FT /transl_table=11 FT /gene="lpdA" FT /gene_synonym="lpd" FT /locus_tag="BP0995" FT /product="dihydrolipoamide dehydrogenase" FT /EC_number="1.8.1.4" FT /note="Similar to Escherichia coli dihydrolipoamide FT dehydrogenase LpdA or Lpd or B0116 or Z0126 or ecs0120 FT SW:DLDH_ECOLI (P00391) (473 aa) fasta scores: E(): 7.8e-97, FT 63.713% id in 474 aa, and to Alcaligenes eutrophus FT dihydrolipoamide dehydrogenase PdhL TR:Q59099 (EMBL:U09865) FT (594 aa) fasta scores: E(): 4.8e-147, 75.541% id in 601 aa" FT /protein_id="CAE41296.1" FT /translation="MSNIVEIKVPDIGDFKEVEVIEVLVAAGDTIKAEQSLITVESDKA FT SMEIPASSAGVVKSVKVKVGDKVAEGTVILDVEAAGEAAAAPKAEAPKAEAPKAEAPKA FT DAPKAPAAKASAPAAAAYSGSADLECDMLVLGAGPGGYSAAFRAADLGMDTVMVERYAT FT LGGVCLNVGCIPSKALLHNAAVIDEARALAAHGISFGEPKVDLDKLRGYKDSVVAKLTG FT GLAGMARARKVRVVTGTGEFADPHHLTVTDGEGKKQTIRFKQAIIAAGSQSVKLPFLPD FT DERIVDSTGALQLRAIPKKMLIVGGGIIGLEMGTVYSTLGARLDVVEMLDGLMQGADRD FT LVKVWQKMNAPRFDNIMLKTKTVGAEARKDGIYVSFEGEGAPKEPQRYDLVLQAVGRSP FT NGKKIGAERAGVAVTERGFIEVDRQMRTNVPHIYAIGDVVGQPMLAHKAVHEGHVAAEA FT AHGEKSYFDARVIPSVAYTDPEVAWVGLTEDEAKKQGVKVEKGLFPWAASGRAIANGRD FT EGFTKLLFDAETHRIVGGGIVGTHAGDLISEIALAIEMGADMVDIGKTIHPHPTLGESV FT GMAAEVAEGVCTDLPPMRKK" FT misc_feature 1038400..1038618 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme" FT misc_feature 1038469..1038558 FT /note="ScanRegExp hit to PS00189, 2-oxo acid dehydrogenases FT acyltransferase component lipoyl binding site. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 1038781..1039701 FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase" FT misc_feature 1038880..1038912 FT /note="ScanRegExp hit to PS00076, Pyridine FT nucleotide-disulphide oxidoreductases class-I active site. FT Confirmed by InterPro eMOTIF pattern match." FT CDS complement(1040400..1041575) FT /transl_table=11 FT /gene="flaA" FT /locus_tag="BP0996" FT /product="flagellin" FT /note="Identical to Bordetella bronchiseptica flagellin FT FlaA SW:FLAA_BORBR (Q06064) (390 aa) fasta scores: E(): FT 4.1e-116, 97.949% id in 390 aa, and similar to Salmonella FT typhimurium flagellin TR:Q9R4Q7 (EMBL:UNKNOWN ACCESSION) FT (397 aa) fasta scores: E(): 5.5e-57, 55.309% id in 405 aa" FT /protein_id="CAE41297.1" FT /translation="MAAVINTNYLSLVAQNNLNKSQSALGSAIERLSSGLRINSAKDDA FT AGQAIANRFTANVKGLTQAARNANDGISIAQTTEGALNEINNNLQRIRELTVQASNGTN FT SASDIDSIQQEVNQRLEEINRIAEQTDFNGIKVLKSNATDMTLSIQVGAKDNETIDIKI FT DRNSNWNLYDAVGTVPGGTVNGEARTVNALGFDVLSAVTTTIASDTVTFDAAVAAAEQA FT AGAAAGDGSVVSYGDAANPQYAVVVDNAGTLTSYALTFDKDGKAALGDQLGAVASQAAE FT AAVGVNDVASGDNVTVSGGNANALSKLDDAMKAVDEQRSSLGAIQNRFESTVANLNNTI FT TNLSAARSRIEDSDYATEVSNMTKNQILQQAGTSVLAQANQVPQNVLSLLR" FT misc_feature complement(1040469..1040684) FT /note="HMMPfam hit to PF00700, Bacterial flagellin FT C-terminus" FT misc_feature complement(1041060..1041491) FT /note="HMMPfam hit to PF00669, Bacterial flagellin FT N-terminus" FT CDS complement(1041618..1042568) FT /transl_table=11 FT /locus_tag="BP0997" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41298.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT repeat_region 1041618..1041649 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1041618..1042670) FT misc_feature complement(1041654..1042187) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1042245..1042310) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1042639..1042670) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1042667..1043407) FT /transl_table=11 FT /locus_tag="BP0998" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0419 TR:Q9I694 (EMBL:AE004479) (240 aa) fasta FT scores: E(): 6.3e-33, 44.672% id in 244 aa, and to Xylella FT fastidiosa hypothetical protein Xf0190 TR:Q9PGV8 FT (EMBL:AE003872) (244 aa) fasta scores: E(): 2.9e-28, FT 40.984% id in 244 aa" FT /protein_id="CAE41299.1" FT /translation="MSLPRFYCDARLAPGECVALPEALAHHAVRVLRLRAGAALVLFDG FT AGGEYPATLEIEGKAAWAQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAW FT RVSPIAAQRSVLQLNGARAEKRLAHWQRIAQAAAEQCGRNRLMAVDAPQALAAWLAQAP FT GAALRLLCHPEAELDLAGALARHAAHDDICLLVGPEGGWSDEELEQARAAGVQAVRFGP FT RVLRTETAGIALIAAVSAIRGWNG" FT CDS 1043602..1045638 FT /transl_table=11 FT /gene="tktA" FT /gene_synonym="tkt" FT /locus_tag="BP0999" FT /product="transketolase 1" FT /EC_number="2.2.1.1" FT /note="Similar to Escherichia coli transketolase 1 TktA or FT Tkt or B2935 SW:TKT1_ECOLI (P27302) (663 aa) fasta scores: FT E(): 5.7e-137, 63.433% id in 670 aa, and to Pasteurella FT multocida transketolase 1 TktA or Pm1242 SW:TKT1_PASMU FT (P57927) (668 aa) fasta scores: E(): 3e-158, 61.504% id in FT 678 aa" FT /protein_id="CAE41300.1" FT /translation="MSNPTAPKLALADAIRVLAMDAVQKANSGHPGAPMGMAEIAQALW FT LGNLRHNPADPAWANRDRFVLSNGHGSMLIYALLHLTGYDLPLEELKNFRQLHSRTPGH FT PEVGITPGVETTTGPLGQGLANAVGMALAEALLAAEFNRAGHTVVDHHTYVFLGDGCLM FT EGISHEACSLAGTLKLSKLVALYDDNGISIDGHVEHWFADDTATRFEGYGWNVIRGVDG FT HDVAAVDAAIKQARAQSEKPTLIVCRTVIGKGSPNMAGTHNVHGAPLGNDEIAATRAAL FT GWSAGPFEVPQDIYAAWDSRPAGALAQAAWEDKFQAYAAQYPAEAAEFTRRMKGELPEG FT FAARFEAFLQATVAKGETVATRKASQFAIAELAGLLPEMLGGSADLTGSNFTDWKGVAP FT LRAGHHGVHFGRHINYGVREFGMAAIMNGIALHGGYLPFGGTFLTFSDYSRNAIRMAAL FT MKQRVVHVFTHDSIGLGEDGPTHQSIEHAASLRLIPNLSVWRPCDTVETAAAWGAAVTR FT PASIGMDLHDGGPTALLLSRQNLPFVARDEATQKAIVRGGYVLRDAHDARAAIIATGSE FT VAIALAAQELLAADGIAVRVVSMPSTDVFDRQDAEWKREVLPAGMPRVAVEAGVTAFWH FT KYVGLEGAVVGIDRYGESAPAGALFKFFGLTAEKVAEAVKQVL" FT misc_feature 1043635..1045611 FT /note="HMMPfam hit to PF00456, Transketolase, thiamine FT diphosphate binding domain" FT misc_feature 1043647..1043709 FT /note="ScanRegExp hit to PS00801, Transketolase signature FT 1. Confirmed by InterPro eMOTIF pattern match." FT CDS 1045656..1046666 FT /transl_table=11 FT /gene="gap" FT /gene_synonym="hexC" FT /locus_tag="BP1000" FT /product="glyceraldehyde-3-phosphate dehydrogenase" FT /EC_number="1.2.1.12" FT /note="Similar to Pseudomonas aeruginosa glyceraldehyde FT 3-phosphate dehydrogenase Gap or HexC or pa3195 FT SWALL:G3P_PSEAE (SWALL:P27726) (334 aa) fasta scores: E(): FT 9.1e-84, 66.07% id in 336 aa, and to Alcaligenes eutrophus FT glyceraldehyde 3-phosphate dehydrogenase, plasmid cbbgP FT SWALL:G3PP_ALCEU (SWALL:P50322) (336 aa) fasta scores: E(): FT 1.1e-107, 84.52% id in 336 aa" FT /protein_id="CAE41301.1" FT /translation="MTIRVVINGYGRIGRNILRAHYENGKKHDIEIVAINDLGDPKTNA FT HLTRFDTAHGKFPGTVTVDGDYMVVNGDKIRVLANRNPAELPWGELGVDVVLECTGFFT FT SKEKAGAHLKGGAKKVIISAPGGKDVDATIVFGVNQNVLKAEHTVISNASCTTNCLAPL FT VKPLHDKLGVETGLMTTVHAYTNDQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGLV FT LPELNGKLDGFAIRVPTINVSLVDLSFVAKRDTTVEEVNSILQAAAEGELKDILTYNTE FT PLVSIDFNHNPASSNFDATLTKVSGKLVKVSSWYDNEWGFSNRMLDTTVALMSAK" FT misc_feature 1045659..1046660 FT /note="HMMPfam hit to PF00044, Glyceraldehyde 3-phosphate FT dehydrogenase, NAD binding domain" FT misc_feature 1046112..1046135 FT /note="ScanRegExp hit to PS00071, Glyceraldehyde FT 3-phosphate dehydrogenase active site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 1046784..1047977 FT /transl_table=11 FT /gene="pgk" FT /locus_tag="BP1001" FT /product="phosphoglycerate kinase" FT /EC_number="2.7.2.3" FT /note="Similar to Escherichia coli phosphoglycerate kinase FT Pgk or B2926 SW:PGK_ECOLI (P11665) (386 aa) fasta scores: FT E(): 6.3e-83, 64.042% id in 381 aa, and to Alcaligenes FT eutrophus phosphoglycerate kinase, chromosomal CbbkC FT SW:PGKC_ALCEU (P50319) (413 aa) fasta scores: E(): FT 1.8e-103, 75.381% id in 394 aa" FT /protein_id="CAE41302.1" FT /translation="MSNVNTLSALAKSGALSGKRVFIRADLNVPFDDAGRISEDTRIRA FT SVPGIRLALDAGAAVMVTSHLGRPKEGALTEADSLAPVAQRLSELLGMQVRLVPDWVDG FT VSVEPGEVVLLENCRGNVGEKKDDEGLSRKMAALCDVYVNDAFGTAHRAEATTHGIARF FT APVACAGPLLEAELDALGRALHDPKRPLVAIVGGSKVSTKLSILQSLADKVDQLVVGGG FT IANTFMLAAGLPIGKSLAEPEQVEQARAVIEIMKRRGAEVPIPTDVVCAKSFGADAAAT FT VKAAADVAEDDMILDIGPQTAQRLADILKTAGTIVWNGPVGVFEFDQFAHGTEVVARAI FT ADSAGFSIAGGGDTLAAIAKYGIADQTGYISTGGGAFLEFLEGKALPAVAVLQARAA" FT misc_feature 1046829..1047971 FT /note="HMMPfam hit to PF00162, Phosphoglycerate kinase" FT misc_feature 1046841..1046873 FT /note="ScanRegExp hit to PS00111, Phosphoglycerate kinase FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 1047474..1047497 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1048007..1048780) FT /transl_table=11 FT /gene="fabI" FT /gene_synonym="envM" FT /locus_tag="BP1002" FT /product="enoyl-[acyl-carrier-protein] reductase [NADH]" FT /EC_number="1.3.1.9" FT /note="Similar to Escherichia coli, and FT enoyl-[acyl-carrier-protein] reductase [NADH] FabI or EnvM FT or B1288 or Z2512 or Ecs1861 SW:FABI_ECOLI (P29132) (261 FT aa) fasta scores: E(): 1.1e-35, 41.200% id in 250 aa, and FT to Rhizobium meliloti putative enoyl-acyl-carrier-protein FT reductase NADH TR:CAC41683 (EMBL:AL591783) (268 aa) fasta FT scores: E(): 3e-40, 44.578% id in 249 aa" FT /protein_id="CAE41303.1" FT /translation="MNAAAPLQGRRGLVTGIANQDSIAWGCARAFRALGAELAVTYLND FT KARVHVEPLARSIDAALLLPLDLRVDGQLESVFEQIGARWGSLDFVMHSIAYAPRDDLR FT GRVVDCSRAGFLQAMDISCWSFIRMAHLAEPLMPKGGTLFCMTYYGSQMVVEHYNMMGP FT VKAALESATRYLAAELGPQGIRVHAISPGPLKTRAASGITGFDALLDRAQAKAPARSLV FT GIDDVDEATAWLATDAARRITGQTLYIDGGYHIID" FT misc_feature complement(1048034..1048126) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(1048457..1048486) FT /note="ScanRegExp hit to PS00215, Mitochondrial energy FT transfer proteins signature." FT CDS complement(1048777..1049967) FT /transl_table=11 FT /gene="ackA" FT /gene_synonym="ack" FT /locus_tag="BP1003" FT /product="acetate kinase" FT /EC_number="2.7.2.1" FT /note="Similar to Escherichia coli acetate kinase AckA or FT Ack or B2296 or z3558 or ecs3180 SW:ACKA_ECOLI (P15046) FT (400 aa) fasta scores: E(): 7.7e-39, 38.653% id in 401 aa, FT and to Rhizobium meliloti putative acetate kinase FT TR:CAC49250 (EMBL:AL603645) (392 aa) fasta scores: E(): FT 2.3e-76, 54.198% id in 393 aa" FT /protein_id="CAE41304.1" FT /translation="MSDNLLVINAGSSSLKFYLYEIAEGDELRPTLGGQLDGIGGSRPH FT LRIRAQDGHTLLERDVAPTHAADVPGAQEVLGTWLSGHLGGAPCAIGHRVVHGGTQYDA FT PVLVDDDVLAQLDDLTPLAPLHQPNNLAPIRVIRERRPNIPQVACFDTAFHRTHSPLAD FT RYALPEHLYQEGVRRYGFHGLSYEYIAQRLRRALPEIAGGKIVAAHLGNGVSACTMVDG FT RSVDSTMGFTALEGLPMGTRPGRLDPGVVLWMMERGMSHDDIEHLLYHDCGLKGLSGIG FT NDVRELLASDAPAARLALDYFAWRVAEGIAGLGCAMNGIDAIVFTAGIGENAAPVRAAI FT ARHWEWLGVRLDEARNARHGPRISSDDSAIGVYVVRTNEELIIAQHTLALVRQRQA" FT misc_feature complement(1048813..1049958) FT /note="HMMPfam hit to PF00871, Acetokinase family" FT misc_feature complement(1049920..1049955) FT /note="ScanRegExp hit to PS01075, Acetate and butyrate FT kinases family signature 1. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(1049993..1050931) FT /transl_table=11 FT /locus_tag="BP1004" FT /product="phosphate acetyl/butaryl transferase" FT /EC_number="2.3.1.19" FT /note="Similar to Clostridium beijerinckii phosphate FT butyryltransferase Ptb SW:PTB_CLOBE (Q05624) (302 aa) fasta FT scores: E(): 2.3e-39, 40.339% id in 295 aa, and to FT Rhizobium meliloti phosphate acetyltransferase Pta FT SW:PTA_RHIME (Q9X448) (316 aa) fasta scores: E(): 1.4e-76, FT 71.661% id in 307 aa" FT /protein_id="CAE41305.1" FT /translation="MSATRHNHYERLIAHARTLPALPCAVAHPCDETSLGAALQAMQLG FT LLTPILVGPQQKIRDVAERCGLDLGGAAIVDAPHSHAAAAAAVQLVRGGQASLLMKGSL FT HTDELMHEVVARDTGLRTERRISHVFIMDVPTYPEPLFITDAAINIFPDLETKADIVRN FT AIALHLGLGLGEPRVAILSAVEQVMPSIPSTLEAAALCKMADRGQIQGGILDGPLALDN FT AISPEAAQVKGIVSPVAGRAQVLVVPDLEAGNMLAKNLSFLANAQAAGIVLGARVPIVL FT TSRADSAQTRLASCAVATLYAHHLARATPLA" FT misc_feature complement(1050035..1050913) FT /note="HMMPfam hit to PF01515, Phosphate acetyl/butaryl FT transferase" FT CDS complement(1050928..1053276) FT /transl_table=11 FT /locus_tag="BP1005" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical 80.6 kDa FT protein in ackA 5'region SW:YACK_RHIME (Q9X447) (733 aa) FT fasta scores: E(): 4.3e-155, 56.428% id in 739 aa" FT /protein_id="CAE41306.1" FT /translation="MAASAADRTAPDRSPAPAAHPAANLWTSAYQYTLDAWQRGILYTD FT VMRQRGNQYLTHMAKRAPNVLSMKSELVLDGRKFERPVNYALLRIVPPADAPVDPQKHP FT FLVVDPRAGHGPGIGGFKPESEIGVAVRAGHPCYFATFLPHPTDTQTVEDVMRAEARFL FT EEIIALHPQAEGRPVVVGNCQAGWQIMMTAAMRPELFGPIIVAGAPLSYWAGWRDMNPM FT RYSGGLLGGSWLTQMTSDLGNGKFDGAWLVQNFENLNPANTLWSKQYNLYAKVDTEAPR FT YLEFEKWWGGHVFLNGPEIQYIVDNLFVGNRLATAGLVTSDGIRIDLRNIRSPIIVFCS FT KGDNITPPPQALGWITDLYQDDREVVAHNQTIVYAVHESIGHLGIFVSGAVARKEHQEF FT TANIDVIDVLPPGIYQAEIADKTPDTPNADLAYGDYVLSFERRRLDDVREIVERNEEDD FT QRFAAVARISDINLGLYRSFVQPWVRAAVTPQSAEWMQRMHPLRLPYELISDRNPWVAP FT VAQLAEQVREQRQPAAPDNPFWALQKMASDAIVAGLDIWRDLRDSACERIFMATYGSPL FT VQDWAGLGAKDGPPRRHPGVSPEHRDFMAARAAELRAQIDQGGLREAGLRMLLYVSGAE FT GGVDERSFAMIRKMRADTDAKLSLQAFKDATRDQALMMQLDGPAAIRAIPKLLENASAA FT DIRATLHGITHVLEAAGPLSDRARASLDEMKRLFQGAERRAVKRADAPAPARKAAARKT FT ATGKAATGKTAARPAGRKAAATPRKGRTA" FT misc_feature complement(1050988..1051011) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1053431..1054072) FT /transl_table=11 FT /locus_tag="BP1006" FT /product="probable glutathione S-transferase" FT /note="Similar to Escherichia coli hypothetical Gst-like FT protein YfcF or B2301 SW:YFCF_ECOLI (P77544) (214 aa) fasta FT scores: E(): 1e-33, 52.683% id in 205 aa, and to FT Pseudomonas aeruginosa probable glutathione S-transferase FT Pa4401 TR:Q9HW05 (EMBL:AE004855) (211 aa) fasta scores: FT E(): 5.6e-08, 31.905% id in 210 aa" FT /protein_id="CAE41307.1" FT /translation="MPAPLTLYVDARFRSPYAMSAHVALAEKQLEFEVRLVDLAAGEQR FT MQPYQSRALTARVPALAHAGFHLTESSAIQEYLEDAFAPPAHPALYPAGAQARARARQV FT QAWLRTDLAALRRARPIDSVFDAPATTPLDDAAHCDAAKLIRVAEALLPPGQAHLFGAW FT SIVDTELALMLNRLAHSGDDLPAPLRDYAAAQWQRASVQAWLRHYEAARG" FT misc_feature complement(1053746..1054060) FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain" FT CDS complement(join(1054176..1054355,1055405..1055560)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1008" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. No significant database matches" FT /db_xref="PSEUDO:CAE41308.1" FT CDS complement(1054359..1055309) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1007" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. Transposase for IS481 element. The FT transposase lacks a stop codon, hence it is fused to the FT C-terminal portion of the disrupted CDS." FT repeat_region 1054360..1054386 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1054360..1055411) FT misc_feature complement(1054395..1054928) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT CDS complement(1055586..1056134) FT /transl_table=11 FT /locus_tag="BP1009" FT /product="conserved hypothetical protein" FT /note="Similar to Bacillus subtilis DinB protein DinB FT SW:DINB_BACSU (Q02886) (172 aa) fasta scores: E(): 0.0003, FT 28.571% id in 161 aa, and to Rhizobium meliloti conserved FT hypothetical protein Smc00593 TR:CAC45741 (EMBL:AL591786) FT (170 aa) fasta scores: E(): 4.6e-09, 38.554% id in 166 aa" FT /protein_id="CAE41310.1" FT /translation="MPTPADLQLLADYNQWMNQRLYACAAQLPPDELARERGAYFGSLL FT GTLNHVAVSDRVWLQRFAAHPARPAALQPVLALPTPARLDEVLYPALGPLAAHRAWLDR FT CIVDWAAQLRPDDLACELAYTSLACEAARRPFGGLVLHFFNHQTHHRGQATTLLSQAGI FT DMGATDLVLRVPASGDAPA" FT CDS complement(1056153..1056638) FT /transl_table=11 FT /locus_tag="BP1010" FT /product="putative acetyltransferase" FT /note="Similar to Synechocystis sp hypothetical 19.4 kDa FT protein Slr1340 TR:P74076 (EMBL:D90912) (178 aa) fasta FT scores: E(): 9.8e-35, 55.346% id in 159 aa, and to Anabaena FT sp putative acetyltransferase TR:Q9KHE3 (EMBL:AF262218) FT (164 aa) fasta scores: E(): 2.3e-07, 31.111% id in 135 aa" FT /protein_id="CAE41311.1" FT /translation="MLEIIEADFNDAAHARAIIALLDEYARGPMGGGEPLSAHARANLV FT AELARRPHARALLAWQDGEPAGLAICIEGFSTFACRPLLNLHDLAVAERFRGQGVGTRL FT LEALEALAARLDCCKVTLEVLEGNTRAQALYRRLGYAGYELAADTGRAMFWQKKLSA" FT misc_feature complement(1056216..1056470) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT CDS 1056816..1057754 FT /transl_table=11 FT /gene="cbpA" FT /locus_tag="BP1011" FT /product="curved DNA-binding protein" FT /note="Similar to Escherichia coli curved DNA-binding FT protein CbpA or B1000 SW:CBPA_ECOLI (P36659) (306 aa) fasta FT scores: E(): 2.9e-26, 41.772% id in 316 aa, and to FT Caulobacter crescentus DnaJ family protein cc2772 TR:Q9A4Q8 FT (EMBL:AE005942) (314 aa) fasta scores: E(): 4.2e-31, FT 41.742% id in 333 aa" FT /protein_id="CAE41312.1" FT /translation="MEFKDYYKILGVQSDAPEDEIRRAYRKLARKYHPDVSKESDAETR FT MRDVNEAYDVLGNQEKRQAYDNLAAGVAPDGGFQPPPGWDQGFEFHYARDGEGDQQFSD FT FFSSLFGGQARRRAAQQDFRARGEDHHAAIEVDLEDALRGATRDISLRSMQPDEHGQPQ FT VRTRTLSVRIPAGVREGQYIRLAGQGMPGYGGAENGDLYLEVRFKPHPRYRAEGRDLYM FT NLPVAPWEAALGAQVEAPTPGGAVEVAVPPGSRNGRKLRLRGRGIPGDPPGDLYLVLDL FT VLPPADSEAAREAYRKMAQDLAFDPRRNLGV" FT misc_feature 1056828..1057022 FT /note="HMMPfam hit to PF00226, DnaJ domain" FT misc_feature 1057356..1057712 FT /note="HMMPfam hit to PF01556, DnaJ C terminal region" FT CDS 1057757..1058074 FT /transl_table=11 FT /locus_tag="BP1012" FT /product="conserved hypothetical protein" FT /note="Similar to Thermus thermophilus dnaK operon DafA FT TR:P77527 (EMBL:Y07826) (78 aa) fasta scores: E(): 0.93, FT 38.776% id in 49 aa, and to Rhizobium meliloti hypothetical FT 13.0 kDa protein Sma0117 TR:AAK64718 (EMBL:AE007200) (112 FT aa) fasta scores: E(): 0.48, 39.706% id in 68 aa" FT /protein_id="CAE41313.1" FT /translation="MSKIVVTQATVIGKTRALSAEELAHACDAEVEWVARLVEVGIVPA FT RGRQPAEWRFYSLDLRRAREARRLERDMGAGLDAAALILDLCQEVRQLKARLRALGEPP FT A" FT CDS 1058120..1059064 FT /pseudo FT /transl_table=11 FT /locus_tag="BP1013" FT /product="putative membrane protein (pseudogene)" FT /note="Psudogene. Due to a deletion relative to FT parapertussis and bronchiseptica, it's possible that this FT CDS is the result of a fusion between two adjacent CDSs. FT Similar to Escherichia coli hypothetical protein YgaZ or FT B2682 SW:YGAZ_ECOLI (P76630) (245 aa) fasta scores: E(): FT 2e-21, 38.318% id in 214 aa, and to Erwinia chrysanthemi FT YgaZ protein TR:CAC44347 (EMBL:AJ410307) (247 aa) fasta FT scores: E(): 1.1e-20, 39.524% id in 210 aa" FT /db_xref="PSEUDO:CAE41314.1" FT misc_feature join(1058189..1058257,1058270..1058338,1058348..1058416, FT 1058534..1058602,1058630..1058683,1058717..1058785, FT 1058858..1058926,1058987..1059055) FT /note="8 probable transmembrane helices predicted for FT BP1013 by TMHMM2.0 at aa 24-46, 51-73, 77-99, 139-161, FT 171-188, 200-222, 247-269 and 290-312" FT CDS complement(1059085..1060560) FT /transl_table=11 FT /gene="pitA" FT /gene_synonym="pit" FT /locus_tag="BP1014" FT /product="probable phosphate transporter" FT /note="Similar to Escherichia coli low-affinity inorganic FT phosphate transporter 1 PitA or Pit or B3493 or Z4893 or FT Ecs4365 SW:PITA_ECOLI (P37308) (499 aa) fasta scores: E(): FT 1.3e-66, 57.085% id in 494 aa, and to Pseudomonas FT aeruginosa probable phosphate transporter pa4292 TR:Q9HWA8 FT (EMBL:AE004845) (489 aa) fasta scores: E(): 2e-152, 80.493% FT id in 487 aa" FT /protein_id="CAE41315.1" FT /translation="MLHLFSGLDLWVGLSLVLALTFVLAFEFINGFHDTANAVATVIYT FT KAMPPHLAVILSGIFNFLGVLLGGVGVAYAIVHLLPVELLINVDTGRGLAMVFAMLSAA FT IAWNLGTWYFGIPASSSHTLIGSILGVGMANALLTDISLAEGVNWGKAIDIGLSLVVSP FT VAGFMVAGGILLLLKRWLPLSKMHKTPEQRRAIDAKKHPPFWNRLVLVLSAMGVSFVHG FT SNDGQKGIGLIMLVLIGIVPAKFVLDVNSTTYQIDRTRDAASHLSAFYHRNEATLGEFL FT ALSRGGNGADLPKTFRCDPKLTMPTIAALQDDLRGVTNYADLSADKRIDVRRYLLCLDD FT TAKKVARLEGLPARERADLQRLRGDLTTTTEYAPLWVIVAVALALGIGTMVGWRRVVLT FT VGEKIGKQGMTYAQGMAAQVTAVGAIGLANVFSLPVSTTHVLSSGVAGTMVANNSGLQG FT GTVRTILMAWVLTLPASMLLSAGLFWVGTLLAA" FT misc_feature complement(join(1059103..1059168,1059268..1059333, FT 1059379..1059444,1059820..1059870,1059901..1059951, FT 1060030..1060095,1060126..1060191,1060213..1060278, FT 1060339..1060404,1060465..1060530)) FT /note="10 probable transmembrane helices predicted for FT BP1014 by TMHMM2.0 at aa 10-32, 52-74, 94-116, 123-145, FT 155-177, 203-220, 230-247, 372-394, 409-431 and 464-486" FT misc_feature complement(1059124..1059471) FT /note="HMMPfam hit to PF01384, Phosphate transporter FT family" FT misc_feature complement(1059844..1060473) FT /note="HMMPfam hit to PF01384, Phosphate transporter FT family" FT misc_feature complement(1060486..1060560) FT /note="Signal peptide predicted for BP1014 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.663) with cleavage site FT probability 0.449 between residues 25 and 26" FT CDS 1060745..1061395 FT /transl_table=11 FT /gene="mog" FT /gene_synonym="mogA" FT /gene_synonym="chlG" FT /locus_tag="BP1015" FT /product="molybdopterin biosynthesis protein" FT /note="Similar to Escherichia coli molybdopterin FT biosynthesis Mog protein Mog or MogA or ChlG or B0009 or FT Z0009 or Ecs0009 SW:MOG_ECOLI (P28694) (195 aa) fasta FT scores: E(): 4e-47, 68.557% id in 194 aa, and to FT Haemophilus influenzae molybdopterin biosynthesis Mog FT protein Mog or MogA or Hi0336 SW:MOG_HAEIN (P44645) (197 FT aa) fasta scores: E(): 8e-45, 65.803% id in 193 aa" FT /protein_id="CAE41316.1" FT /translation="MSTSTSPSAPLVRSHPDELLIGLVSISDRASTGVYQDQGLPSLRD FT WLGTALTSPWQAVERLIPDEPAAISAAMVDLVDGCGCDLVLTTGGTGPARRDCTPEATL FT AVATKEMPGFGEQMRQISLRFVPTAILSRQVAVIRETAGHAALIINLPGQPKAIRETLE FT GLKDADGAVLAAGVFAAVPYCIDLIGGPYAETDPAVIKAFRPKSALRQPAARQ" FT misc_feature 1060994..1061035 FT /note="ScanRegExp hit to PS01078, Molybdenum cofactor FT biosynthesis proteins signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 1061449..1061784 FT /transl_table=11 FT /locus_tag="BP1016" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2759 TR:Q9I084 (EMBL:AE004704) (104 aa) fasta FT scores: E(): 1.1, 27.027% id in 111 aa" FT /protein_id="CAE41317.1" FT /translation="MKARFALLALGLALAGCANVKDIRDREPAFYGSPQRSAQEYAACV FT SAAWKGLGVPVEQREIRNGYELVSRGSLGVDAVLTTTTWQGKTDASLSTRLPQSGQQLV FT DAANLCL" FT misc_feature 1061449..1061508 FT /note="Signal peptide predicted for BP1016 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.939 between residues 20 and 21" FT misc_feature 1061467..1061499 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1061781..1062641 FT /transl_table=11 FT /locus_tag="BP1017" FT /product="putative peptidase" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3787 TR:Q9HXK8 (EMBL:AE004797) (282 aa) fasta FT scores: E(): 1.9e-72, 68.978% id in 274 aa, and to Xylella FT fastidiosa hypothetical protein Xf0987 TR:Q9PEP1 FT (EMBL:AE003937) (285 aa) fasta scores: E(): 5.5e-25, FT 38.462% id in 247 aa" FT /protein_id="CAE41318.1" FT /translation="MSAAARLWRGAWLALALLAAQGAQAQGYISRKLSAPVPGGVAVVD FT LGQAAQAPEVTYRGRPVMVLREADGPWIAVVGIPLAARPGSEAISVRGSGGAVRSIAFD FT IGAKKYTAQHIKLKNQRQVTPNPDDLKRIERELAEQTDAYRIFRAGVTPSNVLLDRPVP FT GRLSSPFGLRRFFNGQERNPHSGLDFAAAAGTPIKAPAAGRVVLVGDYFFNGRTVFVDH FT GQGFISMFCHMSEIDVKVGDEVPRGGVVGKVGATGRATGPHLHWNISLNDARVDPAIFI FT GAFKP" FT misc_feature 1061781..1061855 FT /note="Signal peptide predicted for BP1017 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 25 and 26" FT misc_feature 1062372..1062620 FT /note="HMMPfam hit to PF01551, Peptidase family M23/M37" FT CDS complement(1062658..1062939) FT /transl_table=11 FT /locus_tag="BP1018" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE41319.1" FT /translation="MTDKHETLRDAADRLNSARRAFGLGEDGLRLLRRSREAFINSLRN FT TGLTYAQAQVKYDNCLDEQQQLHQQAIHELQYAERLHRQLLAELEQTA" FT CDS complement(1063013..1063276) FT /transl_table=11 FT /gene="infA" FT /locus_tag="BP1019" FT /product="translation initiation factor IF-1" FT /note="Similar to Escherichia coli translation initiation FT factor IF-1 InfA or B0884 or Z1228 or Ecs0969 TR:BAB34392 FT (EMBL:Y00373) (72 aa) fasta scores: E(): 1.2e-12, 58.333% FT id in 72 aa, and to Rhizobium meliloti probable translation FT initiation factor IF-1 protein TR:CAC45186 (EMBL:AL591784) FT (72 aa) fasta scores: E(): 1.7e-14, 61.111% id in 72 aa. FT Also similar to BP3637, 54.167% identity (54.167% ungapped) FT in 72 aa overlap." FT /protein_id="CAE41320.1" FT /translation="MAKEELIELNGIVDEVLPDSRYRVKLDNGIEVGAYASGRMRKHRI FT RILAGDRVTLEMSPYDLTKGRINFRHKDERSGPPSRPPQHRR" FT misc_feature complement(1063061..1063273) FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT repeat_region 1063418..1063449 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1063418..1064470 FT CDS 1063520..1064470 FT /transl_table=11 FT /locus_tag="BP1020" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41321.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 1063778..1063843 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1063901..1064434 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1064439..1064470) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1064769..1065506) FT /transl_table=11 FT /gene="fliA" FT /gene_synonym="flaD" FT /locus_tag="BP1021" FT /product="RNA polymerase sigma factor for flagellar operon" FT /note="Similar to Escherichia coli RNA polymerase sigma FT factor for flagellar operon FliA or FlaD or B1922 or Z3012 FT or Ecs2661 SW:FLIA_ECOLI (P31804) (239 aa) fasta scores: FT E(): 9.2e-37, 52.466% id in 223 aa, and to Yersinia FT enterocolitica RNA polymerase sigma factor for flagellar FT operon FliA SW:FLIA_YEREN (P52621) (230 aa) fasta scores: FT E(): 1.1e-38, 52.402% id in 229 aa" FT /protein_id="CAE41322.1" FT /translation="MPNPEDSLVQYAPLVRKLALQLLARLPSSVQLDDLVQAGMIGLLD FT AVRRYQESPDAQFETYATARIRGAMLDELRSQDWLPRSVRSKSRRIETAIQRKEQELMR FT APSEGEIAEELGVPLAEYQGMLADAQGVQILHYEDFNTDGDSDSPWAESSAEHADPLDA FT LLAGDLRRALIDAIDGLPEREKLLLSLCYEQGLNLKEIGAVLNVTEARVCQLRAQATAR FT IRARLKEQAWARLPTAHHLAQVV" FT misc_feature complement(1064832..1065503) FT /note="HMMPfam hit to PF00140, Sigma-70 factor" FT misc_feature complement(1064856..1064921) FT /note="Predicted helix-turn-helix motif with score 1172 FT (+3.18 SD) at aa 196-217, sequence LNLKEIGAVLNVTEARVCQLRA" FT misc_feature complement(1065366..1065407) FT /note="ScanRegExp hit to PS00715, Sigma-70 factors family FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT CDS 1065942..1066265 FT /transl_table=11 FT /gene="flhD" FT /gene_synonym="flbB" FT /gene_synonym="frlA" FT /locus_tag="BP1022" FT /product="flagellar transcriptional activator FlbB" FT /note="Identical to Bordetella bronchiseptica FrlA FT TR:Q44730 (EMBL:U17998) (107 aa) fasta scores: E(): FT 2.5e-39, 98.131% id in 107 aa, and similar to Escherichia FT coli flagellar transcriptional activator FlhD or FlbB or FT B1892 SW:FLHD_ECOLI (P11164) (119 aa) fasta scores: E(): FT 1.1e-13, 48.936% id in 94 aa" FT /protein_id="CAE41323.1" FT /translation="MKTADSSLLADIREVNLSYLLLAQRMLRDDYAASMFRLGFSNEVA FT DILMRLSPAQLVKLANSSSLLCRFRFDDYSLLSALTQDVLGGALQQAHATILLARQPVE FT ELA" FT CDS 1066300..1066860 FT /transl_table=11 FT /gene="flhC" FT /gene_synonym="flaI" FT /gene_synonym="frlB" FT /locus_tag="BP1023" FT /product="flagellar transcriptional activator FlhC" FT /note="Identical to Bordetella bronchiseptica FrlB FT TR:Q44731 (EMBL:U17998) (186 aa) fasta scores: E(): FT 1.5e-76, 99.462% id in 186 aa, and similar to Escherichia FT coli flagellar transcriptional activator FlhC or FlaI or FT B1891 or Z2945 or Ecs2601 SW:FLHC_ECOLI (P11165) (192 aa) FT fasta scores: E(): 4e-38, 57.059% id in 170 aa" FT /protein_id="CAE41324.1" FT /translation="MATKSVSQEADEILLASSMITLGARLQVLQAETGLSHDRLARLYR FT EIRGCSPPKGMLPFSVDWFMTWLPNIHSSLFYNVYTFLNQRTSSQGIRAVIDAYRLYLE FT HAPADAAEPVLSFTRAWMLVRFFDGGMLQLSGCRQCGGHFIAHAHDPQTDFVCAICRPP FT PRAGKTRAAARARAGQLAAPARP" FT CDS 1066981..1067856 FT /transl_table=11 FT /gene="motA" FT /locus_tag="BP1024" FT /product="chemotaxis protein MotA" FT /note="Similar to Escherichia coli chemotaxis MotA protein FT MotA or B1890 SW:MOTA_ECOLI (P09348) (295 aa) fasta scores: FT E(): 2.9e-60, 55.439% id in 285 aa, and to Salmonella FT typhimurium chemotaxis MotA protein MotA SW:MOTA_SALTY FT (P55891) (295 aa) fasta scores: E(): 9e-63, 56.842% id in FT 285 aa" FT /protein_id="CAE41325.1" FT /translation="MLIVIGYAVVILAVVGSFIGLGGHLGALYQPFELTLIAGAAVGAF FT MAGNSRKSLGLVAKAIPEAFRSSPYSKDVYMELMALLYVLLNKARREGLMAIESHIEDP FT LSSPIFNEYPRIMKDAKLMEFITDYLRIMISGNMSSFEIETLMDEEIETYRHEREVPTH FT ALQQVADALPAFGIVAAVLGVIKALAAVDQPPAILGDLISKAMVGTFLGVLLAYGFVAP FT MAARIERRTSESVKVLECIKVTLLASMNGYPPQLAVEFGRKVLFSAVRPSFGELEEHVR FT QAKSAATGRA" FT misc_feature join(1066984..1067052,1067062..1067130,1067482..1067550, FT 1067593..1067661) FT /note="4 probable transmembrane helices predicted for FT BP1024 by TMHMM2.0 at aa 2-24, 28-50, 168-190 and 205-227" FT misc_feature 1067593..1067646 FT /note="ScanRegExp hit to PS01307, Flagellar motor protein FT motA family signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 1067869..1068816 FT /transl_table=11 FT /gene="motB" FT /locus_tag="BP1025" FT /product="chemotaxis protein MotB" FT /note="Similar to Escherichia coli chemotaxis MotB protein FT MotB or B1889 or Z2943 or Ecs2599 SW:MOTB_ECOLI (P09349) FT (308 aa) fasta scores: E(): 8.5e-54, 57.500% id in 280 aa, FT and to Salmonella typhimurium chemotaxis MotB protein MotB FT SW:MOTB_SALTY (P55892) (309 aa) fasta scores: E(): 9.8e-54, FT 58.156% id in 282 aa" FT /protein_id="CAE41326.1" FT /translation="MSTVNNHRVVIRRRKVRRGGHHGGSWKIAYADFITAMMAFFLVMW FT LISIVPREELKGIAEYFRMPLRVALTGGPSSSAETSAIPGGGQDPLRSQGDVRRAEGNR FT VEAQPMGDAERRDRHRLERLKVRLENLIEESPVLKNFRPQLLIDMTTEGLRIQIVDNQN FT RPMFATGSADVQPYMRDILRELGPVLNDLPNKISIAGHTDASQYARGERAYSNWELSAD FT RANASRQELVAGGMHEGKVLRIQGLASSMSLVKDDPFAAVNRRISLVVLNASTQRRIEN FT ENAAAADVNARDAQGVGAALAGQLAASGSDGGAR" FT misc_feature 1067950..1068018 FT /note="1 probable transmembrane helix predicted for BP1025 FT by TMHMM2.0 at aa 28-50" FT misc_feature 1068364..1068660 FT /note="HMMPfam hit to PF00691, OmpA family" FT CDS join(1068831..1068908,1068912..1069211) FT /pseudo FT /transl_table=11 FT /gene="cheY" FT /locus_tag="BP1026" FT /product="chemotaxis protein CheY (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TGA stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Escherichia coli chemotaxis protein FT CheY or B1882 or Z2936 or Ecs2592 SW:CHEY_ECOLI (P06143) FT (128 aa) fasta scores: E(): 8.3e-09, 40.000% id in 110 aa, FT and to Caulobacter crescentus chemotaxis protein CheyI or FT Cc0432 TR:Q9AB03 (EMBL:AE005716) (121 aa) fasta scores: FT E(): 4.1e-15, 45.614% id in 114 aa" FT /db_xref="PSEUDO:CAE41327.1" FT variation 1068909..1068911 FT /note="in-frame TGA stop codon in pertussis; TGG in FT parapertussis and bronchiseptica" FT misc_feature 1068918..1069178 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS 1069238..1071295 FT /transl_table=11 FT /gene="cheA" FT /locus_tag="BP1028" FT /product="chemotaxis protein CheA" FT /note="Similar to Escherichia coli chemotaxis protein CheA FT or B1888 SW:CHEA_ECOLI (P07363) (654 aa) fasta scores: E(): FT 8.2e-86, 61.21% id in 673 aa, and to Salmonella typhimurium FT chemotaxis protein CheA SW:CHEA_SALTY (P09384) (671 aa) FT fasta scores: E(): 9.8e-94, 62.16% id in 674 aa" FT /protein_id="CAE41328.1" FT /translation="MSSGLDLSQFYETFFDEADELLAQMEQLLLELDVGAPDIEQLNAI FT FRAAHSIKGGAATFGCFQKLAGTTHLLENLLDAIRRGEMGLRADMVDIFLETKDVLKSQ FT LDAYRASEEPEDAVFERICAVLRQLALEGGQAPAAAAPAPVAAPEPDPEPEPAPQPAAA FT STAAGLPLRVRFSKVSDKDAQSLLEEMGNLGDVRASERAGQTLTVWVDTTCSPDDIEAV FT CCFIIDADQLEIAREAEPAHAPAQAAVAAAPDAAATPTPAPAPAAAQAAEPARAARPSI FT APAHADKESTSIRVGVEKVDQVINLVGELVITQAMLAQTASTLDPVLHDRLLNGMEQLE FT RNARDLQEAVMSIRMMPMDYVFSCFPRLVRDIAGKMGKQIELQTYGRATELDKSLIERI FT IDPLTHLVRNSLDHGIETPDKRVAAGKEPVGQLVLSAQHNGGNIAIEVSDDGGGLSRER FT ILRKAVAQGLTVNENSPDDEIWQLIFAPGFSTADQVTDISGRGVGMDVVRRNIQDMGGH FT VQLSSVPGQGTTTRIVLPLTLAILDGMSVRVGEETFILPLNHVTESLQPQVDQIYSVAG FT NERVMQVRGEYLPLVEMHRVFSVGQAQADPTQAIAVIMQAEERRFALLVDHLVGQHQVV FT VKNLESNYRKVPGISAATILGDGSVALIVDVLALARANREKWSQPEAILN" FT misc_feature 1069256..1069573 FT /note="HMMPfam hit to PF01627, Hpt domain" FT misc_feature 1069277..1069303 FT /note="ScanRegExp hit to PS00039, DEAD-box subfamily FT ATP-dependent helicases signature." FT misc_feature 1070429..1070851 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature 1070855..1071259 FT /note="HMMPfam hit to PF01584, CheW-like domain" FT CDS 1071310..1071810 FT /transl_table=11 FT /gene="cheW" FT /locus_tag="BP1029" FT /product="chemotaxis protein CheW" FT /note="Similar to Escherichia coli chemotaxis protein CheW FT or B1887 or Z2941 or Ecs2597 SW:CHEW_ECOLI (P07365) (167 FT aa) fasta scores: E(): 1.3e-41, 74.83% id in 155 aa, and to FT Burkholderia pseudomallei (Pseudomonas pseudomallei) FT chemotaxis protein CheW TR:O05183 (EMBL:U92493) (175 aa) FT fasta scores: E(): 7e-43, 72.56% id in 164 aa" FT /protein_id="CAE41329.1" FT /translation="MAAKPHTQATRAEDVGNEFLVFTLGEEEYGIDILKVQEIRGYDAA FT TVTRIANVPSFIKGVTNLRGIIVPIVDLRIKFNLGSVEYNEQTVVIILNLDRRVVGIVV FT DGVSDVLMLNAAQVRPAPEFGATLSTEYLTGLGTVDERMLILVDIEKLMTSDEMALVEK FT VAS" FT misc_feature 1071355..1071780 FT /note="HMMPfam hit to PF01584, CheW-like domain" FT misc_feature 1071872..1071970 FT /note="Signal peptide predicted for BP1030 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.656 between residues 33 and 34" FT CDS 1071884..1073590 FT /transl_table=11 FT /gene="tsr" FT /gene_synonym="cheD" FT /locus_tag="BP1030" FT /product="methyl-accepting chemotaxis protein I" FT /note="Similar to Escherichia coli methyl-accepting FT chemotaxis protein I Tsr or CheD or B4355 SW:MCP1_ECOLI FT (P02942) (551 aa) fasta scores: E(): 3e-64, 46.71% id in FT 533 aa, and to Salmonella typhimurium methyl-accepting FT chemotaxis protein II TaR SW:MCP2_SALTY (P02941) (553 aa) FT fasta scores: E(): 1.2e-63, 45.87% id in 558 aa. Also FT similar to BP1384 (64.476% identity in 563 aa overlap), FT BP1385 (61.649% identity in 558 aa overlap), BP2268 FT (56.415% identity in 491 aa overlap), and to BP1591 FT (44.216% identity in 536 aa overlap)," FT /protein_id="CAE41330.1" FT /translation="MRKFLANLSIRGSLLGVLAFFSFMLVVGAALGVLSLRVSNDTLQG FT VKQTQDVADAMDRVVNSYKDALNGLGRAAASHYGAIVSAIGQPVQVEQGLGSEAAGLLQ FT RAKASLNRAETEYEYYKGLARPASAADSLKEVENAFEALVGQGLHPLAAALEKGDMAGY FT QSHAQNVLDALEGRFSGAIAAFDFWRASELLDAHEVAETRYRFVLAAVAAGGVLAALLV FT FSTYLFLRRRVLQPLREVGQHFDKIAAGDLTARVDVRNSNEIGQLFAGLKRMEESLTRT FT VAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQ FT ANQLAGVASDVAERGGSAVSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAV FT EAARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQ FT EIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQ FT EQAQRLAEAVAVFKINTGEVIEVPAHQLGSRQAPGAREAALARDDALALGH" FT misc_feature join(1071929..1071997,1072499..1072567) FT /note="2 probable transmembrane helices predicted for FT BP1030 by TMHMM2.0 at aa 20-42 and 210-232" FT misc_feature 1072514..1072723 FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature 1073009..1073191 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain" FT CDS join(1073599..1074018,1074017..1074457) FT /pseudo FT /transl_table=11 FT /gene="cheR" FT /gene_synonym="cheX" FT /locus_tag="BP1031" FT /product="chemotaxis protein methyltransferase FT (Pseudogene)" FT /EC_number="2.1.1.80" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 140. The frameshift occurs within FT a polymeric tract of (CG)3. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT chemotaxis protein methyltransferase CheR or CheX or B1884 FT SW:CHER_ECOLI (P07364) (286 aa) fasta scores: E(): 1.1e-64, FT 60.83% id in 263 aa, and to Salmonella typhimurium FT chemotaxis protein methyltransferase CheR SW:CHER_SALTY FT (P07801) (288 aa) fasta scores: E(): 1.6e-63, 58.18% id in FT 275 aa" FT /db_xref="PSEUDO:CAE41331.1" FT misc_feature join(1073680..1074021,1074020..1074436) FT /note="HMMPfam hit to PF01739, CheR methyltransferase" FT variation 1074012..1074017 FT /note="(CG)3 in pertussis; (CG)4 in parapertussis in FT bronchiseptica" FT CDS 1074454..1075506 FT /transl_table=11 FT /gene="cheB" FT /locus_tag="BP1032" FT /product="protein-glutamate methylesterase" FT /EC_number="3.1.1.61" FT /note="Similar to Escherichia coli protein-glutamate FT methylesterase CheB or B1883 SW:CHEB_ECOLI (P07330) (349 FT aa) fasta scores: E(): 5.3e-88, 71.22% id in 344 aa, and to FT Salmonella typhimurium protein-glutamate methylesterase FT CheB SW:CHEB_SALTY (P04042) (349 aa) fasta scores: E(): FT 1.3e-89, 71.8% id in 344 aa" FT /protein_id="CAE41332.1" FT /translation="MKKIKVLCVDDSALVRGLMTEIINSHPDMEVVATAPDPLVARELI FT KKHNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTERGGEITLRALELGAIDF FT VTKPKLGIRDGLIEYSEVIADKIRAASRARLRALAPASHAAPLRLRSPFASSEKLVIVG FT ASTGGTEAIREVLQPLPADSPAILITQHMLAGFTRSFAQRLDALCAVTVREASDGERVL FT PGHVYLAPGGETHMRLGRSGANYVIGLQASEPVNRHRPSVDVLFHSAAEAAGGNAIGVI FT LTGMGKDGAAGLLAMKRAGARTMAQDEASCVVFGMPREAIALGAADEVVPLADISERIL FT TRLGDRGHRV" FT misc_feature 1074463..1074813 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT misc_feature 1074928..1075479 FT /note="HMMPfam hit to PF01339, CheB methylesterase" FT CDS 1075559..1075948 FT /transl_table=11 FT /gene="cheY" FT /locus_tag="BP1033" FT /product="chemotaxis protein CheY" FT /note="Similar to Escherichia coli chemotaxis protein CheY FT or B1882 or Z2936 or Ecs2592 TR:AAG56872 (EMBL:K02175) (129 FT aa) fasta scores: E(): 5.1e-36, 78.73% id in 127 aa, and to FT Burkholderia pseudomallei (Pseudomonas pseudomallei) CheY FT TR:P94342 (EMBL:U78087) (131 aa) fasta scores: E(): FT 1.9e-37, 80.31% id in 127 aa" FT /protein_id="CAE41333.1" FT /translation="MVDKGMKILVVDDFPTMRRIIRNLLKELGFENVDEAEDGAIGLEK FT LRNGAFQFVVSDWNMPNLDGLEMLKQIRADAALKSLPVLMVTAEAKKENIVAAAQAGAN FT GYVVKPFTAATLEEKLNKIFEKLAG" FT misc_feature 1075574..1075918 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS 1075957..1076589 FT /transl_table=11 FT /gene="cheZ" FT /locus_tag="BP1034" FT /product="chemotaxis protein CheZ" FT /note="Similar to Escherichia coli chemotaxis protein CheZ FT or B1881 SW:CHEZ_ECOLI (P07366) (214 aa) fasta scores: E(): FT 2.7e-42, 67.5% id in 200 aa, and to Salmonella typhimurium FT chemotaxis protein CheZ SW:CHEZ_SALTY (P07800) (214 aa) FT fasta scores: E(): 3.6e-42, 66% id in 200 aa" FT /protein_id="CAE41334.1" FT /translation="MNATDTGMQADPTDLIQRIASLTRMLRDSMRELGLDQAIKDAAEA FT IPDARDRLRYVAQMTEQAANRVLNATEAAGPIQDGMARGAQALDERWQQWYDQPLELPQ FT ARALVQDTRAFLAAVPQHTQQTQAKLMEIVMAQDFQDLTGQVIMRMMDVVGAIERELLQ FT VLLDNVPQERRDEANSLLNGPQVNPGGKADVVTSQDQVDDLLASLGF" FT repeat_region complement(1076660..1077890) FT /note="Insertion sequence" FT CDS complement(1076689..1077705) FT /transl_table=11 FT /locus_tag="BP1035" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19 pilin inverting protein ChnY TR:Q9F7E1 FT (EMBL:AF282240) (324 aa) fasta scores: E(): 8.2e-50, FT 47.516% id in 322 aa" FT /protein_id="CAE41335.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPVVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature complement(1076821..1077153) FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT misc_feature complement(1077166..1077453) FT /note="HMMPfam hit to PF01548, Transposase" FT tRNA complement(1077941..1078017) FT /note="tRNA Asp anticodon GTC, Cove score 95.07" FT tRNA complement(1078053..1078128) FT /note="tRNA Glu anticodon TTC, Cove score 60.10" FT tRNA complement(1078160..1078235) FT /note="tRNA Ala anticodon GGC, Cove score 86.46" FT CDS 1078494..1079543 FT /transl_table=11 FT /locus_tag="BP1036" FT /product="putative aldo/keto reductase" FT /note="Similar to Rhizobium meliloti putative aldoketo FT reductase protein Smb20500 TR:CAC48882 (EMBL:AL603643) (331 FT aa) fasta scores: E(): 7.8e-35, 39.26% id in 326 aa, and to FT Agrobacterium tumefaciens Agr_l_1936p TR:AAK89542 FT (EMBL:AE008296) (332 aa) fasta scores: E(): 2e-31, 36.44% FT id in 332 aa" FT /protein_id="CAE41336.1" FT /translation="MSTSFPTQRLGATDMRITRVGFGAWAIGGPGWSVGWGAQDDGESI FT RAIRHAVNRGINWIDTAAVYGLGHSESLVGRALAGMPPSERPYVFTKGGLVGSPADPMA FT KPRRIGAPDSLRREVEASLRRLGVEAIDLYQMHWPAGDGTPLEVYWQALLDLRQAGKVR FT HVGLSNHNLAQVQAAEQLGHVETLQPPFSAIRRESAADLLPWCASHDTGVIVYSPMQSG FT LLSGAFSAERAAALPEGDWRARNAEFMAPRLAANLEFADALKPIAQHHGASVGAIAVAW FT ALAWPGVTGAIAGARSAEQVDGWLGAATLELDSDDMRQIADALARTGVGGGPLLPPPDE FT AALALTARP" FT misc_feature 1078824..1079021 FT /note="HMMPfam hit to PF00248, Aldo/keto reductase family" FT CDS complement(join(1079540..1080115,1080117..1081184)) FT /pseudo FT /transl_table=11 FT /gene="lnt" FT /gene_synonym="cutE" FT /locus_tag="BP1037" FT /product="putative apolipoprotein N-acyltransferase FT (Pseudogene)" FT /EC_number="2.3.1.-" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 356. Similar to Escherichia coli FT apolipoprotein N-acyltransferase Lnt or CutE or B0657 FT SW:LNT_ECOLI (P23930) (512 aa) fasta scores: E(): 5.6e-18, FT 30.76% id in 533 aa, and to Neisseria meningitidis FT apolipoprotein N-acyltransferase, putative Nmb0713 FT TR:Q9K0A2 (EMBL:AE002426) (524 aa) fasta scores: E(): FT 4.3e-20, 34.63% id in 537 aa" FT /db_xref="PSEUDO:CAE41337.1" FT variation complement(1080118) FT /note="A in pertussis; (-) deleted in parapertussis and FT bronchiseptica" FT CDS complement(1081181..1082068) FT /transl_table=11 FT /gene="corC" FT /locus_tag="BP1038" FT /product="magnesium and cobalt efflux protein" FT /note="Similar to Salmonella typhimurium magnesium and FT cobalt efflux protein CorC SW:CORC_SALTY (Q9R874) (292 aa) FT fasta scores: E(): 7.9e-39, 40.95% id in 293 aa, and to FT Neisseria meningitidis hypothetical protein Nma0716 FT TR:Q9JVS6 (EMBL:AL162754) (274 aa) fasta scores: E(): FT 1.5e-43, 46.44% id in 267 aa" FT /protein_id="CAE41338.1" FT /translation="MSDPYPATEAHAQRAAKSPPKSLLDRLLSLVRREPEDREGIKAIL FT EAAHERELLDAESYAMIKGALAVSERTVADIMVPRSRMDLLDISQPLPQLLATIIETAH FT SRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVRPAVFIPEVKRLNVLLREFRAS FT RNHLAIVIDEHGGISGLVTMEDVLEQIVGDIEDEFDEDEEESIFPEGENQWRLTASTDI FT SHFNATFATDLPDDEYDSVGGWLGGQLGRIPRRGDSADHDGLHIEVVRADARRALWLRV FT RRNAGAQPPASAAE" FT misc_feature complement(1081496..1081657) FT /note="HMMPfam hit to PF00571, CBS domain" FT misc_feature complement(1081676..1081840) FT /note="HMMPfam hit to PF00571, CBS domain" FT CDS complement(1082209..1082658) FT /transl_table=11 FT /locus_tag="BP1039" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf0903 TR:Q9PEX5 (EMBL:AE003930) (161 aa) fasta scores: FT E(): 2.1e-19, 45.8% id in 155 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa3982 TR:Q9HX37 FT (EMBL:AE004816) (160 aa) fasta scores: E(): 6.9e-18, 46.35% FT id in 151 aa" FT /protein_id="CAE41339.1" FT /translation="MQYGVADARLPRWRLRRWVQYALAGAAGDGHAGLAGAELGLRLVG FT LAEGRRLNREFRGRDYATNVLTFEYGTGPDGVARGDIVVCVPVLAREAREQRKTLLDHA FT AHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPYLAA" FT misc_feature complement(1082260..1082529) FT /note="HMMPfam hit to PF02130, Uncharacterized protein FT family UPF0054" FT CDS complement(1082672..1083694) FT /transl_table=11 FT /locus_tag="BP1040" FT /product="PhoH-like protein" FT /note="Similar to Escherichia coli PhoH-like protein YbeZ FT or B0660 or Z0809 or Ecs0698 SW:PHOL_ECOLI (P77349) (359 FT aa) fasta scores: E(): 2.6e-60, 54.74% id in 316 aa, and to FT Salmonella typhimurium YbeZ protein TR:Q9RCI1 FT (EMBL:AJ249116) (361 aa) fasta scores: E(): 1.8e-60, 52.94% FT id in 340 aa" FT /protein_id="CAE41340.1" FT /translation="MSTSRSRARRTMPAIVNLDGDNIHLANLCGPLDENLRQLADGMGV FT KLARRGSRVTIEGEQAELAGRALRRFHEQATHRALSVDDIQLGLVEIGVGRPVEVQADP FT RELDQTLPPVDDESGGVVLRTRRTDLRPRTPRQRDYMNNILKHDITFGVGPAGTGKTWL FT AVACAIDAMERDTVQRLVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLMGFE FT RVQRLFEKQTIEIAPLAYMRGRTLNHAFVILDEAQNTTPEQMKMFLTRIGFGSKAVITG FT DPSQVDLPRGQQSGLAHAVQVLEEVQGIATTRFTNRDVVRHPLVARIVDAYDQAAANGD FT " FT misc_feature complement(1082696..1083673) FT /note="HMMPfam hit to PF02562, PhoH-like protein" FT misc_feature complement(1083212..1083235) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1083691..1085034) FT /transl_table=11 FT /locus_tag="BP1041" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma0590 TR:Q9JW12 (EMBL:AL162753) (442 aa) fasta FT scores: E(): 5.1e-120, 68.65% id in 437 aa, and to FT Haemophilus influenzae hypothetical protein Hi0019 FT SW:YLEA_HAEIN (Q57163) (474 aa) fasta scores: E(): FT 2.8e-116, 67.86% id in 445 aa" FT /protein_id="CAE41341.1" FT /translation="MYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTC FT SVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTL FT HRLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRVDGATAFVSIMEGCSKYCSFCVVP FT YTRGEEVSRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYV FT HEIPGIERIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTAL FT EFKSVVRRLRAARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPG FT TPAADLHDDTPQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMG FT RTENNRIVNFPGVPRLIGHMVDVVVTHAHTNSLRGRVAGIERDTSGAE" FT misc_feature complement(1083724..1085037) FT /note="HMMPfam hit to PF00919, Uncharacterized protein FT family UPF0004" FT misc_feature complement(1084534..1084596) FT /note="ScanRegExp hit to PS01278, Uncharacterized protein FT family UPF0004 signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS join(1085347..1085664,1085663..1086001) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1042" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 106. The frameshift occurs within FT a polymeric tract of (GC)5. The sequence has been checked FT and believed to be correct. Similar to Vibrio cholerae FT hypothetical protein Vc2488 TR:Q9KP85 (EMBL:AE004318) (178 FT aa) fasta scores: E(): 2.6e-05, 30.1% id in 186 aa, and to FT Rhizobium meliloti hypothetical transmembrane protein FT TR:CAC47890 (EMBL:AL591793) (235 aa) fasta scores: E(): FT 2e-06, 38.97% id in 136 aa" FT /db_xref="PSEUDO:CAE41342.1" FT misc_feature join(1085347..1085403,1085491..1085559,1085596..1085649) FT /note="3 probable transmembrane helices predicted for FT BP1042 by TMHMM2.0 at aa 21-43, 73-95 and 108-125" FT misc_feature 1085356..1085388 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT variation 1085662..1085671 FT /note="(GC)5 in pertussis; (GC)6 in parapertussis and FT bronchiseptica" FT repeat_region complement(1086027..1087257) FT /note="Insertion sequence" FT CDS complement(1086056..1087072) FT /transl_table=11 FT /locus_tag="BP1044" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein ChnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /protein_id="CAE41343.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPVVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature complement(1086188..1086520) FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT misc_feature complement(1086533..1086820) FT /note="HMMPfam hit to PF01548, Transposase" FT CDS complement(1087404..1088339) FT /transl_table=11 FT /gene="secF" FT /locus_tag="BP1045" FT /product="protein-export membrane protein" FT /note="Similar to Escherichia coli protein-export membrane FT protein SecF or B0409 or Z0508 or Ecs0460 SW:SECF_ECOLI FT (P19674) (323 aa) fasta scores: E(): 1.7e-45, 42.24% id in FT 303 aa, and to Neisseria meningitidis protein-export FT membrane protein SecF or Nma0813 or Nmb0608 TR:Q9JRH2 FT (EMBL:AL162754) (311 aa) fasta scores: E(): 1e-68, 62.54% FT id in 307 aa" FT /protein_id="CAE41344.1" FT /translation="MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEF FT TGGTVMEVSYAQTAQLDQVRTAIGTLGYTDFQVQNFGTSRDVMIRLPIAEGQTSATQSE FT TVMGALKAADPAVELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKFAVA FT GVIANLHDVVIILGFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKA FT SVQEVINSAITQTISRTIITHGSTQMMVLAMLFFGGPTLHYFSLALTIGIWFGIYSSVF FT VAAALAMWMGVKREDLVKPVKKDGDEVEIA" FT misc_feature complement(1087461..1088255) FT /note="HMMPfam hit to PF02355, Protein export membrane FT protein" FT misc_feature complement(join(1087464..1087529,1087542..1087607, FT 1087716..1087781,1087794..1087859,1087875..1087940, FT 1088223..1088288)) FT /note="6 probable transmembrane helices predicted for FT BP1045 by TMHMM2.0 at aa 17-39, 133-155, 160-182, 186-208, FT 244-266 and 270-292" FT misc_feature complement(1088172..1088339) FT /note="Signal peptide predicted for BP1045 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.625) with cleavage site FT probability 0.291 between residues 56 and 57" FT CDS complement(1088389..1090269) FT /transl_table=11 FT /gene="secD" FT /locus_tag="BP1046" FT /product="protein-export membrane protein" FT /note="Similar to Escherichia coli protein-export membrane FT protein SecD or B0408 or Z0507 or Ecs0459 SW:SECD_ECOLI FT (P19673) (615 aa) fasta scores: E(): 3.2e-51, 45.57% id in FT 632 aa, and to Neisseria meningitidis protein-export FT membrane protein SecD or Nmb0607 TR:Q9K0J0 (EMBL:AE002416) FT (618 aa) fasta scores: E(): 6.1e-112, 56.61% id in 627 aa" FT /protein_id="CAE41345.1" FT /translation="MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKV FT DQATLEQVQQIIENAQLPVDSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAG FT DPHYTVALNLLPASPPWMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLV FT ADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKL FT QLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVA FT KAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVVLTGEN FT LQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVTAPVI FT RSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYS FT TLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGM FT AIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPI FT RGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLSSISIGTVWKPKAN" FT misc_feature complement(1088446..1089222) FT /note="HMMPfam hit to PF02355, Protein export membrane FT protein" FT misc_feature complement(join(1088449..1088514,1088527..1088592, FT 1088695..1088760,1088776..1088841,1088848..1088904, FT 1090183..1090248)) FT /note="6 probable transmembrane helices predicted for FT BP1046 by TMHMM2.0 at aa 7-29, 455-474, 476-498, 503-525, FT 559-581 and 585-607" FT CDS complement(1090336..1090680) FT /transl_table=11 FT /locus_tag="BP1047" FT /product="putative secreted protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3822 TR:Q9HXI0 (EMBL:AE004799) (112 aa) fasta FT scores: E(): 1.2e-14, 48.27% id in 116 aa, and to FT Escherichia coli hypothetical protein YajC or B0407 or FT Z0506 or Ecs0458 SW:YAJC_ECOLI (P19677) (110 aa) fasta FT scores: E(): 6.2e-14, 45.28% id in 106 aa" FT /protein_id="CAE41346.1" FT /translation="MSAIDTAGLVLAQAAPAEGNALMGMLPIVLMFVILYFLMIRPQMK FT RQKEHRNMVAALSKGDEVVTSGGMLGRVSKVTDSYITVEVSELADKPVEVVMQKTAVSA FT VLPKGTIKAL" FT misc_feature complement(1090363..1090623) FT /note="HMMPfam hit to PF02699, Uncharacterized secreted FT proteins, YajC family COG1862" FT misc_feature complement(1090564..1090620) FT /note="1 probable transmembrane helix predicted for BP1047 FT by TMHMM2.0 at aa 20-39" FT CDS complement(1090825..1091775) FT /transl_table=11 FT /locus_tag="BP1048" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41347.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT repeat_region 1090825..1090856 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1090825..1091877) FT misc_feature complement(1090861..1091394) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1091452..1091517) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1091846..1091877) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1091874..1093010) FT /transl_table=11 FT /gene="tgt" FT /locus_tag="BP1049" FT /product="queuine tRNA-ribosyltransferase" FT /EC_number="2.4.2.29" FT /note="Similar to Escherichia coli queuine FT tRNA-ribosyltransferase Tgt or B0406 SW:TGT_ECOLI (P19675) FT (375 aa) fasta scores: E(): 2.9e-99, 65.77% id in 374 aa, FT and to Neisseria meningitidis putative queuine FT tRNA-ribosyltransferase Tgt or Nma0928 TR:Q9JVA4 FT (EMBL:AL162754) (371 aa) fasta scores: E(): 7.1e-103, 67.2% FT id in 375 aa" FT /protein_id="CAE41348.1" FT /translation="MTGLQFELLATDGGARRGRLTLNHGVVETPIFMSVGTYGSVKAML FT PHELEDIGAQIVLGNTFHLWLRPGTAIMEKHGGLHGFMQWDKPILTDSGGFQVFSLQGM FT RKITEEGVKFASPIDGARLFLTPEESMRIQRSLNSDIVMVFDECTPYEIDGRPASIDED FT ARSMRMSLRWARRSRDEFDRLGNPNALFGIVQGGMYEALRDESLAGLAEIGFHGYAIGG FT LSVGEPKEDMMRILAHVTPRLPAQAPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNAR FT NGWLFTRYGDVKIRNARYRDDTRPLDPSCACHTCGHFSRAYLHHLQRANEITGARLNTL FT HNLHFYLAIMGEMREAIAAGRFEAWRAQFAADRARGVD" FT misc_feature complement(1091898..1092629) FT /note="HMMPfam hit to PF01702, Queuine FT tRNA-ribosyltransferase" FT CDS complement(1093007..1094050) FT /transl_table=11 FT /gene="queA" FT /locus_tag="BP1050" FT /product="S-adenosylmethionine:tRNA FT ribosyltransferase-isomerase" FT /EC_number="5.-.-.-" FT /note="Similar to Escherichia coli FT S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA FT or B0405 or Z0504 or Ecs0456 SW:QUEA_ECOLI (P21516) (356 FT aa) fasta scores: E(): 3.2e-67, 55.97% id in 343 aa, and to FT Pseudomonas syringae QueA TR:Q9L6W9 (EMBL:AF232004) (354 FT aa) fasta scores: E(): 2.6e-71, 59.42% id in 345 aa" FT /protein_id="CAE41349.1" FT /translation="MPTPLTLADFDYHLPPELIAQSPAAERGGSRLLHLDAASRLHDRR FT FPDLAGLLRPHDLLVFNDTRVIKARLTGQKATGGKVEVLVERITAPDRALAHVRASKSP FT GPGMRLRLAEAFEAEVLGREGELFDLRFPAPVLDLLDAHGATPLPPYITHAADATDERR FT YQTVYAREPGAVAAPTAGLHFDQPMLEQLAAQGVQRAFVTLHVGAGTFQPVRVQNLAEH FT IMHAEWYTVPEATVAAIARARAHGGRIVAVGTTSVRALESAAAQAQDGPLAAAQGDTRL FT FITPGYRYRAVDALLTNFHLPQSTLLMLVSALAGVEPIRRAYAHAVAERYRFFSYGDAM FT FIETPAP" FT misc_feature complement(1093403..1094038) FT /note="HMMPfam hit to PF02547, Queuosine biosynthesis FT protein" FT CDS 1094238..1095674 FT /transl_table=11 FT /locus_tag="BP1051" FT /product="probable D-alanyl-D-alanine carboxypeptidase" FT /note="Similar to Escherichia coli penicillin-binding FT protein 4 precursor DacB or B3182 SW:PBP4_ECOLI (P24228) FT (477 aa) fasta scores: E(): 2.5e-21, 29.19% id in 435 aa, FT and to Pseudomonas aeruginosa probable D-alanyl-D-alanine FT carboxypeptidase Pa3047 TR:Q9HZG1 (EMBL:AE004729) (476 aa) FT fasta scores: E(): 4.4e-57, 40.21% id in 470 aa" FT /protein_id="CAE41350.1" FT /translation="MRRAGKQGKWQQWLAGVMLALGAAGAAAQGLPSSLVAAWKATKLP FT DQSLSLVVQEINGPRLATLNAKEPRNPASVMKLVTTWAALSELGPSYAWRTEFLTEPGN FT RPDAHGVLRGPLYLRAGGDPQLLLQDLWALLRELRLRGVKQIGDLVVDRSIFGQVAIDP FT GAFDGASDRAYNASPDALMVGFGAQRLLFTPDAAARKWVPMIDPPLPGLRLEGAVEWSD FT VRCPGPPVVGTEPVVTQQGVSIRLSGKVAGSCGEFSLYRLALSQPEYASAVFRLLWREL FT GGTLKGQIRSGVVPPDAVVLASHDSPTLGEAIRTINKRSNNVMARTLLLTLGAERGRRP FT ATVESSGVVARTVLGAQGLEMPELVIDNGSGLSREGRVSADSLASMLTVAWNSPLMPEF FT ISSLAIAGVDGTVRRRLKGNGAQGMAHLKTGSLRDVRAVAGYVLGASGKRYVVVSMVNH FT ENAAAVRSFDDALVAWLAEQ" FT misc_feature 1094238..1094321 FT /note="Signal peptide predicted for BP1051 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.794 between residues 28 and 29" FT misc_feature 1094451..1094786 FT /note="HMMPfam hit to PF02113, D-Ala-D-Ala carboxypeptidase FT 3 (S13) family" FT misc_feature 1095039..1095608 FT /note="HMMPfam hit to PF02113, D-Ala-D-Ala carboxypeptidase FT 3 (S13) family" FT CDS 1095765..1096406 FT /transl_table=11 FT /gene="upp" FT /gene_synonym="uraP" FT /locus_tag="BP1052" FT /product="uracil phosphoribosyltransferase" FT /EC_number="2.4.2.9" FT /note="Similar to Escherichia coli uracil FT phosphoribosyltransferase Upp or Urap or B2498 SW:UPP_ECOLI FT (P25532) (208 aa) fasta scores: E(): 3.1e-52, 65.21% id in FT 207 aa, and to Pseudomonas aeruginosa uracil FT phosphoribosyltransferase Upp or Pa4646 SW:UPP_PSEAE FT (Q9HVE6) (212 aa) fasta scores: E(): 4.1e-60, 76.88% id in FT 212 aa" FT /protein_id="CAE41351.1" FT /translation="MPVHEIRHPLIRHKLGIMRRADLSTKSFRELSQEVAALLTYEATK FT DMPLAPASVEGWCGTVEVDKITGKKVTVVPILRAGIGMLDGVLSLIPGAKVSVVGVARN FT EETLQAHTYLERLVGELDQRLALIVDPMLATGGSMVAAIDMLKRAGCREIRALTLVSAP FT EGIDAVLKAHPDVQIYTASIDQGLNENGYIMPGLGDAGDRIFGTTQKHAE" FT misc_feature 1095813..1096310 FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain" FT repeat_region 1096557..1097787 FT /note="Insertion sequence" FT CDS 1096742..1097758 FT /transl_table=11 FT /locus_tag="BP1053" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein ChnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /protein_id="CAE41352.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKQVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature 1096994..1097281 FT /note="HMMPfam hit to PF01548, Transposase" FT misc_feature 1097294..1097626 FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT CDS 1098091..1100823 FT /transl_table=11 FT /gene="prn" FT /locus_tag="BP1054" FT /product="pertactin precursor" FT /note="Identical to the previously sequenced Bordetella FT pertussis pertactin precursor Prn or Omp69A SW:PERT_BORPE FT (P14283) (910 aa) fasta scores: E(): 0, 100% id in 910 aa, FT and to Bordetella bronchiseptica pertactin precursor Prn FT SW:PERT_BORBR (Q03035) (911 aa) fasta scores: E(): FT 1.4e-160, 91.31% id in 921 aa" FT /protein_id="CAE41353.1" FT /translation="MNMSLSRIVKAAPLRRTTLAMALGALGAAPAAHADWNNQSIVKTG FT ERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGILLENPAAELQFRNGSVTSSGQLSDD FT GIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGAGGV FT QIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSV FT LGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGAVPGGAVPG FT GFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVSGGSLSAPH FT GNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVA FT TELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGS FT VDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGS FT EPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPK FT PAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSK FT RLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGG FT LAGYTRGDRGFTGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGY FT AVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGS FT SVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELG FT LGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW" FT misc_feature 1098091..1098192 FT /note="Signal peptide predicted for BP1054 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 28 and 29" FT CDS complement(1100890..1102311) FT /transl_table=11 FT /gene="cysG" FT /locus_tag="BP1055" FT /product="siroheme synthase" FT /EC_number="2.1.1.107" FT /note="Similar to Escherichia coli siroheme synthase CysG FT or B3368 or Z4729 or Ecs4219 SW:CYSG_ECOLI (P11098) (457 FT aa) fasta scores: E(): 5.7e-77, 49.56% id in 462 aa, and to FT Xylella fastidiosa siroheme synthase Xf0832 TR:Q9PF46 FT (EMBL:AE003922) (476 aa) fasta scores: E(): 2e-95, 60% id FT in 470 aa" FT /protein_id="CAE41354.1" FT /translation="MTLFPIFADLTGRRVLVVGGGAVAVRKTQALLQAGAEVVVGAPRL FT DPALAALAEQGGIARLDGGFEPAWLAGAWLVVAATDDRAVNAAVSEAARARRVFCNVVD FT DAELSSFQVPSVVDRSPLIVAISSSGVAPVLARRLRERIESLFDHSLGQLAALAARYRP FT RIRAARPDLGQRRRFYDWLLDGPVAARLRQQQPGLAEQELEQALRAPQAAPRGSVVLVG FT AGPGDPGLLTLKALRALNEADIILYDRLVSEGVLALARRDAERVPVGKLPGKGHDATQA FT RIHALMLAQARAGRRVVRLKGGDAFIFGRGGEELEYLRAHGVPYEVVPGITAALACAAY FT AGMPLTHRDHAQSVRMVTAHCRADQDTLDWAGLARDQQTLAFYMGVGQLDYVTARLLEH FT GRAPATPFALIENGSRPEQRVVTGTLADLPEIARRRGVRPPALLVIGEVAALADTLQWF FT GQHQRGLPGPQALAA" FT misc_feature complement(1101025..1101663) FT /note="HMMPfam hit to PF00590, Tetrapyrrole FT (Corrin/Porphyrin) Methylases." FT misc_feature complement(1101322..1101423) FT /note="ScanRegExp hit to PS00840, Uroporphyrin-III FT C-methyltransferase signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(1101607..1101651) FT /note="ScanRegExp hit to PS00839, Uroporphyrin-III FT C-methyltransferase signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 1102575..1103291 FT /transl_table=11 FT /locus_tag="BP1056" FT /product="putative membrane protein" FT /note="Weakly similar to Bacteriophage Mx8 p64 TR:AAK94399 FT (EMBL:AF396866) (357 aa) fasta scores: E(): 6.6, 25.54% id FT in 137 aa" FT /protein_id="CAE41355.1" FT /translation="MMVRFFVSIGVLAWAGAAQAGVCDAKFMHDGGQVQLTGSGNIGLG FT ADLGFTEVSKTNGDNCRARVQGMATFSYAGLPPGKSRLDYLMTVKNGQATFVKYAEAGE FT QPRSEGQFDLRMLGLFAYDKISGEGQRLPGASYRLRIGKEAPVGGQPTTVVRIGEKTVG FT ARQDLSTALGRHACWPITYPRSSEPTMATFKGLTLPIPGMDTTVTDWYCPSVNLVMRQD FT IDQAGIKSSVEITQLK" FT misc_feature 1102581..1102640 FT /note="1 probable transmembrane helix predicted for BP1056 FT by TMHMM2.0 at aa 56-75" FT misc_feature 1102794..1102817 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 1103376..1103693 FT /transl_table=11 FT /locus_tag="BP1057" FT /product="putative membrane protein" FT /note="Similar to Escherichia coli ElaB protein ElaB or FT B2266 or Z3526 or Ecs3154 SW:ELAB_ECOLI (P52084) (101 aa) FT fasta scores: E(): 1.1e-06, 35.86% id in 92 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa3040 FT TR:Q9HZG8 (EMBL:AE004729) (109 aa) fasta scores: E(): FT 5.6e-10, 39.45% id in 109 aa" FT /protein_id="CAE41356.1" FT /translation="MAARRSDEATKEKLIDSVKTSLNDAETLLREAASTTGDKATELRE FT RALASVRRTREALYDAQDAVLERGRRAARATDDYVHDNPWQAISIAGVTGLLLGLLISR FT R" FT misc_feature 1103628..1103681 FT /note="1 probable transmembrane helix predicted for BP1057 FT by TMHMM2.0 at aa 85-102" FT CDS 1103734..1104147 FT /transl_table=11 FT /locus_tag="BP1058" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3041 TR:Q9HZG7 (EMBL:AE004729) (126 aa) fasta FT scores: E(): 0.00021, 34.48% id in 116 aa" FT /protein_id="CAE41357.1" FT /translation="MGLRRSVFGVAASLVGLTRTRLELLALEAAGEKIRLIKLLGMAFG FT ALLFLTLAVLVFTITIAVAFWPTESRYAALGWLAGGYGVIGLVLFFLVRRDLVDGPVPF FT AATLEELGRDTDMLERVRDAQRASDGQRNAEDD" FT misc_feature join(1103863..1103931,1103944..1104012) FT /note="2 probable transmembrane helices predicted for FT BP1058 by TMHMM2.0 at aa 44-66 and 71-93" FT CDS 1104149..1104508 FT /transl_table=11 FT /locus_tag="BP1059" FT /product="hypothetical protein" FT /note="Weakly similar to Synechocystis sp hypothetical 23.9 FT kDa protein Slr1949 TR:P74511 (EMBL:D90915) (212 aa) fasta FT scores: E(): 8.6, 22.85% id in 140 aa" FT /protein_id="CAE41358.1" FT /translation="MARHSASVDRMVRLELLRARAALEREALAQGIVEAGRTLTPSNMV FT KSIWPSLGKANTSRLFWQAFALVRRYPFVSSTLSAMVMGRGARRSRLLKLAGVALVGWQ FT AYRIWQSAREERQAD" FT CDS complement(1104551..1106110) FT /transl_table=11 FT /gene="ubiD" FT /locus_tag="BP1060" FT /product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase" FT /EC_number="4.1.1.-" FT /note="Similar to Escherichia coli FT 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD or B3843 FT SW:UBID_ECOLI (P26615) (497 aa) fasta scores: E(): 2.7e-65, FT 68.15% id in 515 aa, and to Neisseria meningitidis FT 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD or FT Nmb1694 SW:UBID_NEIMB (Q9JY86) (494 aa) fasta scores: E(): FT 4.6e-70, 70.68% id in 515 aa" FT /protein_id="CAE41359.1" FT /translation="MPGSALKYRDLRDFLAQLERQGELKRITAPVSTRLEMTEIADRVL FT RAGGPALLFENARHNDAPADMPVLANLFGTPRRVAWGMGADDVGALRETGELLASLREP FT EAPKGLRDALAKVSMLKAALWDMSPKTVRSAACQEIVWEGADVELSRLPIQTCWPGDVA FT PLLAWGLVITRGPNARRQNLGIYRQQPLGPNKLIMRWLSHRGGALDFRDHAQAHPGKPF FT PITVALGADPATILGAVTPVPDTLSEYQFAGLLRGSRTEVVKALGSDLSVPASAEIVLE FT GHLLPADDPRAVAAVVPEGANPPPATGYEMALEGPYGDHTGYYNEQDWFPVFTVDRITM FT RRNPIYHSTYTGKPPDEPAVLGVALNEVFVPLLRRQLPEIVDFYLPPEGCSYRLAVVSI FT RKQYAGHAKRVMFGLWSVLRQFMYTKFIVVVDEDIDPRDWTEVVWAMTTRMDPVRDTVL FT VENAPIDYLDFASPVSGLGGKMGLDATNKWPGETSREWGTPIHMDEAVKRRVDAMWDTL FT GL" FT misc_feature complement(1104713..1106068) FT /note="HMMPfam hit to PF01977, VdcC family" FT CDS 1106179..1107009 FT /transl_table=11 FT /locus_tag="BP1061" FT /product="putative transglycosylase" FT /note="Similar to Neisseria meningitidis putative FT transglycosylase Nma1674 TR:Q9JTQ7 (EMBL:AL162756) (207 aa) FT fasta scores: E(): 0.017, 30.05% id in 193 aa, and to FT Caulobacter crescentus transglycosylase, putative Cc2416 FT TR:Q9A5N1 (EMBL:AE005911) (218 aa) fasta scores: E(): FT 0.034, 31.32% id in 166 aa" FT /protein_id="CAE41360.1" FT /translation="MPDASVAGLFRQLAQGVHHHLAEWLRISSVYLGIAVIVTVSMGFA FT LPGLRDQALQVHKALLTALAPTSMPSAELEPGAEAGADASSAVVMAIPSAPASNATGFL FT GPLRSDTPPAPPNRPSAASSAQVEALRNYISRKYKVAYDATAVLVNTVYKVGREKQLDP FT LLLLAVIAIESRYNPFAESPVGAQGLMQVMTRVHQDKFDAIAHVGKGNPLDPVANIHVG FT STILKDCINRRGSFNGGLACYVGATGPDDGGYGAKVLAERRRLALASGIALARD" FT misc_feature 1106257..1106325 FT /note="1 probable transmembrane helix predicted for BP1061 FT by TMHMM2.0 at aa 27-49" FT misc_feature 1106626..1106976 FT /note="HMMPfam hit to PF01464, Transglycosylase SLT domain" FT CDS complement(1107044..1108198) FT /transl_table=11 FT /locus_tag="BP1062" FT /product="probable aminotransferase" FT /note="Similar to Thermus aquaticus aspartate FT aminotransferase AspC SW:AAT_THETH (Q56232) (385 aa) fasta FT scores: E(): 9.9e-32, 34.27% id in 388 aa, and to FT Pseudomonas aeruginosa probable aminotransferase Pa4722 FT TR:Q9HV76 (EMBL:AE004885) (390 aa) fasta scores: E(): FT 7e-65, 47.89% id in 380 aa" FT /protein_id="CAE41361.1" FT /translation="MPRLATRTNDFLTFQVVELFKEAQALQAAGRDIISLGIGEPDFTA FT PPQVVEALERATRAGLNGYSAPAGLSALREAIAAFYESEFGARVDPARIIVTAGASGAL FT ALACAALVNPGAQVLMPDPSYPANSNFVLAAGGQPRLIPSTAAKRFQLSAQDVRDHWND FT ATQGVLIASPSNPTGTSIAHDELAELLAAVRERQGFSIVDEIYLGLSYESQPRSALLLD FT DNIIVINSFSKYFHMTGWRLGWMIVPESMAAKVEKMAASLAICAPTLAQHAALACFTPD FT ALKIFEHRREAFKQRRDYLLPEFERLGIPVPVRPDGAFYIYADIAALGTTSMAFSHRLL FT HEGGVAAVPGLDFGPAHGERTMRFSYATGLDRLQEAVARIEKLL" FT misc_feature complement(1107047..1108198) FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II" FT CDS 1108241..1109113 FT /transl_table=11 FT /locus_tag="BP1063" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium tuberculosis hypothetical FT 27.6 kDa protein Rv1249c or Mtv006.21C TR:O50464 FT (EMBL:AL021006) (262 aa) fasta scores: E(): 0.28, 33.92% id FT in 168 aa, and to Streptomyces coelicolor hypothetical 37.5 FT kDa protein Scbac19f3.03C TR:CAC44326 (EMBL:AL596102) (377 FT aa) fasta scores: E(): 4, 28.98% id in 314 aa" FT /protein_id="CAE41362.1" FT /translation="MQPSRRAFLLGRRPRQSSWAAFCERLSLAVAAPLRDLDPAGGAAL FT LRARSDAEVRRARALCQEYGVSLGLPGARPAGRPVLQIDPRGLRALAPEGGAWRAGPGC FT LAGELAAAGLGQFAEVAPTCTLADWLADSHGWPTGETGVSGVLEASVLLADGTAEVLGP FT FGAADVRPLRSATVQRLVPALFQLAGGQDAAACLAQPAWPARYRLDALQPREPAGVNLA FT HLLLGHDSALAWVESVLLAPAAAPPPAASGSAPAEAARLDARVRALFDPDGVLAARAGS FT GAVGAKGRE" FT CDS 1109230..1111518 FT /transl_table=11 FT /gene="maeB" FT /locus_tag="BP1064" FT /product="NADP-dependent malic enzyme" FT /EC_number="1.1.1.40" FT /note="Similar to Escherichia coli NADP-dependent malic FT enzyme Maeb or B2463 SW:MAO2_ECOLI (P76558) (759 aa) fasta FT scores: E(): 1.3e-173, 59.81% id in 759 aa, and to FT Haemophilus influenzae NADP-dependent malic enzyme MaeB or FT hi1245 SW:MAO2_HAEIN (P43837) (756 aa) fasta scores: E(): FT 3.1e-168, 58.1% id in 759 aa. Almost identical to BP3456 FT (97.082% identity in 754 aa overlap), and highly similar to FT BP1120 (63.900% identity in 759 aa overlap)" FT /protein_id="CAE41363.1" FT /translation="MDANFRKAALEYHEHGRPGKISVTPTKQLSNQRDLSLAYSPGVAA FT ACEEIVDDPVNVFRYTGRGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGL FT DVFDIEINETDPDKLVEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQ FT HGTAITVCAAVVNGLAVAGKRIEDVKLVTSGAGAAALACLDLLVDLGLPLEHIWVTDIE FT GVVYEGRKKLMDADKERFARKTKARTLAEVIEGADVFLGLSAGNVLKPEMVATMAANPL FT ILALANPNPEILPEAAHAVRDDIVMATGRSDYPNQVNNVLCFPYIFRGALDVGATTITR FT EMEKAAVLAIASLAREEQNEVVAAAYGTYDISFGRDYLIPKPFDPRLIVRIAPAVAKAA FT MEGGVATRPIADLDAYAEQLQQFVYHSGAFMKPLFSQAKQIVRDGGRARIVFTEGEDER FT VLRAVQVIVDEKVAKPILVGRPQVLLSRIEKFGLRLRLGQDVEVCNPEYDERFHQYWTT FT YWDMMCRNGITKEMARVEMRRRLTLIGAMMVHLGDADGMICGAVSGFHDHLRFIDQVIG FT RKPGAQTYAAMNILLLNERTVALVDTHVNEDPSAEQIAEYTVAAAEEMQRLGLAPKVAL FT LSRSNFGSGSSASGAKMRHALELVNRQAPGLEIDGEMHGDCALDESLRLRLLPDSPLKG FT SANLLVCPNVDSGNIAYNLLKTTAGGNVAVGPFLLGANAAVHILTSSSTVRRIVNMAAM FT AVVNADAVR" FT misc_feature 1110511..1111494 FT /note="HMMPfam hit to PF01515, Phosphate acetyl/butaryl FT transferase" FT CDS join(1111568..1111864,1111866..1112441,1112441..1112728) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1065" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have two frameshift FT mutation following codons 99 and 291. The second frameshift FT occurs within a polymeric tract of (G)4. The sequence has FT been checked and believed to be correct. Similar to FT Pseudomonas aeruginosa hypothetical protein Pa3241 FT TR:Q9HYZ9 (EMBL:AE004747) (389 aa) fasta scores: E(): FT 6.9e-54, 43.84% id in 390 aa, and to Rhizobium loti Mlr3635 FT protein Mlr3635 TR:Q98FS8 (EMBL:AP003002) (361 aa) fasta FT scores: E(): 0.46, 26.38% id in 235 aa" FT /db_xref="PSEUDO:CAE41364.1" FT variation 1111865 FT /note="G in pertussis; (AT)G in parapertussis and FT bronchiseptica" FT variation 1112438..1112441 FT /note="(G)4 in pertussis; GG(A)GG in parapertussis and FT bronchiseptica" FT CDS 1112725..1113189 FT /transl_table=11 FT /locus_tag="BP1066" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf2616 TR:Q9PAA2 (EMBL:AE004068) (138 aa) fasta scores: FT E(): 0.34, 27.92% id in 111 aa" FT /protein_id="CAE41365.1" FT /translation="MTRNGQTTLQRQLRRGGALDHDGLDKQAVVDATRELGMSLLVADC FT DRARSRSAVLRAIAKAVDFPEYFGGNLDALYDCLCDTVLDHKTGIVLWLYRLHSGDPAL FT HEDSNLIDGVCADTAEFARENGRVFAYVIEHAGRHPDPEPGVAAAPYGEA" FT CDS complement(1113216..1114166) FT /transl_table=11 FT /locus_tag="BP1067" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41366.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 1113216..1113247 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1113216..1114268) FT misc_feature complement(1113252..1113785) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1113843..1113908) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1114237..1114268) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT tRNA complement(1114417..1114493) FT /note="tRNA Pro anticodon TGG, Cove score 87.76" FT CDS complement(1114534..1115310) FT /transl_table=11 FT /gene="pstB" FT /gene_synonym="phoT" FT /locus_tag="BP1068" FT /product="phosphate transport ATP-binding protein" FT /note="Similar to Escherichia coli phosphate transport FT ATP-binding protein PstB or PhoT or B3725 or Z5216 or FT Ecs4661 SW:PSTB_ECOLI (P07655) (257 aa) fasta scores: E(): FT 1.2e-76, 80.47% id in 251 aa, and to Edwardsiella tarda FT peripheral membrane protein B PstB TR:Q9AML4 FT (EMBL:AF324340) (259 aa) fasta scores: E(): 1.8e-75, 76.83% FT id in 259 aa" FT /protein_id="CAE41367.1" FT /translation="MENTATAAKAKLEVKNLNFYYGKFHAIRNVNMSIRENKVTAFIGP FT SGCGKSTLLRTFNRMFELYPGQRAEGEILLDGENLLTSKTDISLIRAKVGMVFQKPTPF FT PMSIYDNIAFGVRLFERLSKGEMDERVEWALSKAALWNEVKDKLHQSGNSLSGGQQQRL FT CIARGVAIKPEVLLLDEPCSALDPISTAKIEELIAELKHEYTVVIVTHNMQQAARCSDY FT TAYMYLGELMEYGATDQIFVKPARKETEDYITGRFG" FT misc_feature complement(1114624..1115202) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(1114804..1114848) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(1115158..1115181) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1115355..1116191) FT /transl_table=11 FT /gene="pstA" FT /gene_synonym="phoT" FT /locus_tag="BP1069" FT /product="phosphate transport system permease protein" FT /note="Similar to Escherichia coli phosphate transport FT system permease protein PstA or PhoT or B3726 SW:PSTA_ECOLI FT (P07654) (296 aa) fasta scores: E(): 1.8e-60, 58.45% id in FT 272 aa, and to Pasteurella multocida PstA or Pm0434 FT TR:Q9CNJ6 (EMBL:AE006079) (280 aa) fasta scores: E(): FT 7.7e-74, 72% id in 275 aa" FT /protein_id="CAE41368.1" FT /translation="MNNGVYRRRHLVNKVMLTISLGALLFGLFWLFWIIATLLVKGAPA FT LSFTLFTEITPPPGQAGGLLNAVVGSVLMAGVGTLIGTPVGILAGTYLAEYGQRGWLAP FT ATRFLNDVLLSAPSIIIGLFIYAVYVAQVGHYSGWAGALALSILVIPVVVRTTDNMLLL FT VPNSLREATAALGCPKWRMITLVCYRAAKTGIITGVLLAIARISGETAPLLFTALSNQF FT MSLNMNAPMANLPVVIYQYAASPFKDWNNLAWAGATLITLLVLGINILARNLFRKS" FT misc_feature complement(join(1115367..1115432,1115571..1115636, FT 1115730..1115786,1115799..1115864,1115925..1115990, FT 1116075..1116140)) FT /note="6 probable transmembrane helices predicted for FT BP1069 by TMHMM2.0 at aa 24-46, 74-96, 116-138, 142-161, FT 192-214 and 260-282" FT misc_feature complement(1115463..1115714) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(1115625..1115711) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign." FT misc_feature complement(1116066..1116191) FT /note="Signal peptide predicted for BP1069 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.964) with cleavage site FT probability 0.379 between residues 45 and 46" FT CDS complement(1116234..1117250) FT /transl_table=11 FT /gene="pstC" FT /gene_synonym="phoW" FT /locus_tag="BP1070" FT /product="phosphate transport system permease protein" FT /note="Similar to Escherichia coli phosphate transport FT system permease protein PstC or PhoW or B3727 or Z5218 or FT Ecs4663 SW:PSTC_ECOLI (P07653) (319 aa) fasta scores: E(): FT 9.9e-70, 64.56% id in 302 aa, and to Pasteurella multocida FT PstC or Pm0435 TR:Q9CNJ5 (EMBL:AE006079) (320 aa) fasta FT scores: E(): 1.4e-82, 71.33% id in 307 aa" FT /protein_id="CAE41369.1" FT /translation="MSAVMDNSVPLPSSTADSTTTGTPSPMKQNNNALMDALFKNLTRT FT FAFLVFILLAAIMISLIYGSRESLAKYGLSFLWLNDWDPVQQNYGAVVPIIGTLLTSFI FT ALLIAVPVSFGIAIFLIELAPTWLRRPLGTAVEMLAAIPSIIYGMWGLFVFVPVFQQYV FT QPALIATLGSVPIIGGLFAGPPFGIGIFTAGLILSIMIIPFIAAVMRDVFELVPPMLKE FT SAYGLGSTTWEVMWRVVLPFTKSGVIGGIMLGLGRALGETMAVTFVIGNAFRWSGSLFS FT PGNSIASALANEFNEAGGIQKSALLELGLILFLITTVVLAFSKMLLVRLSRAEGRQA" FT misc_feature complement(join(1116261..1116326,1116444..1116509, FT 1116627..1116692,1116705..1116755,1116777..1116842, FT 1116888..1116953,1117059..1117124)) FT /note="7 probable transmembrane helices predicted for FT BP1070 by TMHMM2.0 at aa 42-64, 99-121, 136-158, 165-182, FT 186-208, 247-269 and 308-330" FT misc_feature complement(1116387..1116617) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(1116528..1116614) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(1117385..1118425) FT /transl_table=11 FT /gene="pstS" FT /gene_synonym="phoS" FT /locus_tag="BP1071" FT /product="phosphate-binding periplasmic protein precursor" FT /note="Similar to Escherichia coli phosphate-binding FT periplasmic protein precursor PstS or PhoS or B3728 FT SW:PSTS_ECOLI (P06128) (346 aa) fasta scores: E(): 1.2e-71, FT 56.67% id in 337 aa, and to Pasteurella multocida PstS or FT Pm0436 TR:Q9CNJ4 (EMBL:AE006079) (403 aa) fasta scores: FT E(): 1.3e-89, 69.97% id in 333 aa" FT /protein_id="CAE41370.1" FT /translation="MFKRVFKQISIGAALSAAVFAAQAADVTGAGASFPYPIYAKWASD FT YKAATNNAVNYQSIGSGGGQQQIKAKTVDFGASDDPLKAEDLEKNGLLQFPAVIGGTVP FT VINIDGIAPGQLKLSGAVLADIFLGKVKKWDDAAIKALNPDLKLPSADIVVVHRSDGSG FT TTFGWTNYLSKVSSAWKEQVGEGKAVKWPTGQGGKGNEGVAAYVGQLKNSIGYVEYAYA FT KQNKLAWTQLQNKDGKFVQPEQKAFAAAAANADWKSAPGMGVVLTNEPGADSWPVTAAT FT FILVHKSQDKPVQGRAVLEFFDWAFKNGAKSAEALDYVPLPEAVTTEIRAAWGEVKGAD FT GKAVWQ" FT misc_feature complement(1117520..1118359) FT /note="HMMPfam hit to PF01449, Phosphate-binding protein" FT misc_feature complement(1118354..1118425) FT /note="Signal peptide predicted for BP1071 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 24 and 25" FT CDS complement(1118620..1120701) FT /transl_table=11 FT /gene="ppk" FT /locus_tag="BP1072" FT /product="polyphosphate kinase" FT /EC_number="2.7.4.1" FT /note="Similar to Escherichia coli, and polyphosphate FT kinase Ppk or B2501 or Z3764 or Ecs3363 SW:PPK_ECOLI FT (P28688) (687 aa) fasta scores: E(): 1.4e-70, 33.66% id in FT 698 aa, and to Neisseria meningitidis polyphosphate kinase FT Ppk or Nmb1900 SW:PPK_NEIMB (Q9JXS9) (685 aa) fasta scores: FT E(): 1.9e-142, 54.07% id in 688 aa" FT /protein_id="CAE41371.1" FT /translation="MTSRPPSEPLLLNRELSLLKFNERVLAMAENPRVPLLERLRYVCI FT VSSNLDEFFEIRISTLKEQQRQTPTLVGPDGMTADEAFERVQVKVHALVASQYALLNDD FT ILPRLQAEGIVLHHASEWNAQQQEWAREVFNRDVMPLLTPIGLDPAHPFPRVYNKSLNF FT IVALSGADAFGRQASIAVVQAPRALPRLIKMPPEISGHPDGYILLTSLLRAFVGELFPG FT LEMLGCYQWRVTRNSDLFVDEEEVTNLRHALQGELSQRNFGAAVRLEVDKLTPPDLEAY FT LQREFSLAPEDTYRVSGPVNLSRLMQLCNSNTRPDLLFPAYLAPVPAPFDRVGEKPAEL FT FAAVAEQDRLLHHPYQSFQPVIDFLTAAALDPDVMAIKQTIYRTGEDSELMQILLAAAC FT AGKEVTVVVELMARFDEQTNINWAARLEEVGAHVVYGVVAHKTHAKMALVLRREKGRLR FT RYAHLGTGNYHPRTARLYTDFGLLTADPRLCEDMDKVFTQLTGLGARRSLKALLQSPFS FT LHDGMVSLIRAETRAARAGKRARIMAKMNSLLEVQVIEELYKASQAGVKIDLIVRGVCA FT LRAGVPGLSENIRVRSIVGRFLEHSRVFYFYADGAETVYLSSADWMDRNFFRRVEIAFP FT VYDKTLRKRVIDEAFTYALRDNQLAWQQQADGTYARVRNRREAYDVQEALIQRLGQDG" FT misc_feature complement(1118629..1120686) FT /note="HMMPfam hit to PF02503, Polyphosphate kinase" FT CDS 1120937..1122430 FT /transl_table=11 FT /gene="ppx" FT /locus_tag="BP1073" FT /product="exopolyphosphatase" FT /EC_number="3.6.1.11" FT /note="Similar to Escherichia coli, and exopolyphosphatase FT Ppx or B2502 or Z3765 or Ecs3364 SW:PPX_ECOLI (P29014) (512 FT aa) fasta scores: E(): 1.8e-68, 40.88% id in 499 aa, and to FT Neisseria meningitidis exopolyphosphatase Nmb1467 TR:Q9JYR3 FT (EMBL:AE002496) (502 aa) fasta scores: E(): 1.2e-86, 47.18% FT id in 498 aa" FT /protein_id="CAE41372.1" FT /translation="MDHLLAAVDLGSNSFRLSIGRVVQQDGTAQIYQIDRLKETVRLAA FT GLDQDKNLGEDALARALAVLERFGERLRSFHPSRVRAVATNTFRVARNTRDFLPRAERA FT LGFPIEVIAGREEARLIFSGVAHSLPPSLNRRLVIDIGGGSTEVIIGKGVEPNLMSSLY FT MGCVSFSRQFFGDGVVDSHQMKQAELAARREIEVISKQYRKTGWKEAYGSSGTAKALYA FT ILTECGFSTRGITRAGLAKLKDRIIRSGRVIPAELPGIKLERADVLPGGLAIMSALFDE FT LNIDVMHTGDGALRLGVLYDLLGRDDEHDKRHESVQQFMKRYHVDANQARRVRQAALAL FT FDVLLPDGDGHERAELRLALGWAADLHEVGLSIAHNAYHKHTAYVLEHADMPGFSNDEQ FT ELLALLALGHHGKLSKLESLVANRSQWIAILCLRLAALLFRRREDITPLPLAVSIKGTS FT IVVRAQQAWLNRHPLSDFTLRAEDGEWSKVGFSFELLET" FT misc_feature 1120988..1121854 FT /note="HMMPfam hit to PF02541, Ppx/GppA phosphatase family" FT CDS complement(1122661..1123455) FT /transl_table=11 FT /locus_tag="BP1074" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical 28.0 FT kDa protein Scm10.09C TR:Q9RCY9 (EMBL:AL133469) (256 aa) FT fasta scores: E(): 7.9e-44, 50% id in 250 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa4350 FT TR:Q9HW51 (EMBL:AE004851) (251 aa) fasta scores: E(): FT 2.3e-37, 43.9% id in 246 aa" FT /protein_id="CAE41373.1" FT /translation="MLELVRIDTGSTAATAWPGAAPRTLAVGLARTAEEVEQIQRLRYD FT VFTEDMGAVFPQAQDGVEQDRFDQWCEHLMVRELDTGRVVGTYRILTPEKAREAGGYYS FT ESEFDLSGLGALREQLVEVGRSCTHADYRNGAVIMLLWSGLAEYLRRGGYEYVLGCASV FT SLRDDGVTAAEVWRNVARHLDDPALPRVRPLHRYPIERLNSTLPARVPPLIKGYLKLGA FT KVCGEPAWDPDFNAADFPVLLSMAGMDERYRRHFGLDREARR" FT CDS complement(1123676..1125034) FT /transl_table=11 FT /gene="mrsA" FT /locus_tag="BP1075" FT /product="phosphoglucomutase/phosphomannomutase" FT /note="Similar to Escherichia coli protein MrsA or B3176 FT SW:MRSA_ECOLI (P31120) (445 aa) fasta scores: E(): 3.7e-80, FT 55.94% id in 454 aa, and to Neisseria meningitidis putative FT phosphoglucomutase/phosphomannomutase Nma1949 TR:Q9JT71 FT (EMBL:AL162757) (444 aa) fasta scores: E(): 8.4e-88, 55.75% FT id in 452 aa" FT /protein_id="CAE41374.1" FT /translation="MSQRKYFGTDGVRGEVGGPVINAAFALRLGYAAGRVLAREHREHA FT SGRGRNRPQVVIGKDTRISGYMLESALEAGLSAAGIDVLLAGPVPTPAVAYLTRTLRLA FT AGIVISASHNPYQDNGIKFFSAHGMKLPDDIEAAIEQAVDEPLGCVGSEELGRARRMAD FT AQGRYIEFCKSTFPHDLDLNGLKLVVDAAHGAAYNVAPHVFRELGAEVHAIGVSPDGFN FT INKGVGALHPESLAEEVRARGADLGIALDGDADRLQMVDGTGRIYNGDELLYAIVRERM FT QRGPVAGVVGTLMTNYGLERQLQQIGVGFERANVGDRYVLEQMQARGWLYGGESSGHLL FT CLDCHTTGDGTIAALQVLTALRRADATLAEWVADLRMYPQRMINVPLAPGLDWKTHDGL FT ARARGAVEAELAGRGRVLIRASGTEPKLRLMVEAEDEALAQASAQKLADSLGA" FT misc_feature complement(1123715..1125028) FT /note="HMMPfam hit to PF00408, FT Phosphoglucomutase/phosphomannomutase, C-terminal domain" FT misc_feature complement(1123997..1124014) FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature complement(1124690..1124719) FT /note="ScanRegExp hit to PS00710, Phosphoglucomutase and FT phosphomannomutase phosphoserine signature. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(1125031..1125873) FT /transl_table=11 FT /gene="folP" FT /gene_synonym="dhpS" FT /locus_tag="BP1076" FT /product="dihydropteroate synthase" FT /EC_number="2.5.1.15" FT /note="Similar to Escherichia coli dihydropteroate synthase FT FolP or DhpS or B3177 SW:DHPS_ECOLI (P26282) (282 aa) fasta FT scores: E(): 2.1e-44, 48.47% id in 262 aa, and to FT Pseudomonas aeruginosa dihydropteroate synthase FolP or FT Pa4750 TR:Q9HV49 (EMBL:AE004888) (283 aa) fasta scores: FT E(): 4.9e-49, 51.3% id in 269 aa" FT /protein_id="CAE41375.1" FT /translation="MANNFQCGRFEFDLERPLVMGIVNVTPDSFSDGGEHADTDSAIAH FT ARQLIDEGAHILDLGGESTRPGAQPVSAADELARILPLIEGLRDCGVPLSIDTFKPEVM FT RAVLDAGADMINDIYGFRQPGAIDAVARSRCGLCVMHMKGEPRTMQEAPEYADLMGEIG FT VFLGARAQRLRAAWVDPRRIVLDPGFGFGKTMDQNYQLLRRLASLRVSSYPLLVGVSRK FT SMIGAATGKPVGDRLAGSVAAALACVARGAAIVRVHDVAATVDALKVWQAAEQGAVPT" FT misc_feature complement(1125058..1125816) FT /note="HMMPfam hit to PF00809, Dihydropteroate synthase" FT misc_feature complement(1125676..1125717) FT /note="ScanRegExp hit to PS00793, Dihydropteroate synthase FT signature 2." FT misc_feature complement(1125772..1125819) FT /note="ScanRegExp hit to PS00792, Dihydropteroate synthase FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(1125892..1127778) FT /transl_table=11 FT /gene="ftsH" FT /gene_synonym="hflB" FT /gene_synonym="mrsC" FT /gene_synonym="tolZ" FT /locus_tag="BP1077" FT /product="cell division protein" FT /EC_number="3.4.24.-" FT /note="Similar to Escherichia coli cell division protein FT FtsH or HflB or MrsC or TolZ or B3178 SW:FTSH_ECOLI FT (P28691) (644 aa) fasta scores: E(): 1.2e-139, 64.32% id in FT 611 aa, and to Neisseria meningitidis cell division protein FT FtsH or Nmb0798 TR:Q9K027 (EMBL:AE002433) (655 aa) fasta FT scores: E(): 2.7e-144, 66.28% id in 608 aa" FT /protein_id="CAE41376.1" FT /translation="MNNSFSKVAVWMVIALVLFTVFKQFDGRAQTQDGVSYTQFMDDAK FT AGRIRKVDVQGDVLYVTPDAGRPYSLTSPGDLWMVSDLLKYGVQVSGKAREEPSLLMSI FT FVSWFPMLLLIGVWIFFMRQMQGGGRGGAFSFGKSRARMLDENTNQVTFADVAGCDEAK FT EDVQELVDFLRDPSKFQKLGGRIPRGVLMVGSPGTGKTLLAKAIAGEAKVPFFSISGSD FT FVEMFVGVGAARVRDMFENAKKHAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQML FT VEMDGFESGQGVIVIAATNRPDVLDPALLRPGRFDRQVVVPLPDIRGREQILKVHMRKV FT PLSPNVDATILARGTPGFSGADLANLVNEAALFAARRNGRTVDMSDFEKAKDKIIMGAE FT RRSIVMPEEERKNTAYHESGHAIVARMLPKTDPVHKVTIIPRGRALGVTMQLPETDRYS FT MDKERLLNTIAVLFGGRIAEEIFMNQMTTGASNDFERATAIARDIVTRYGMTDELGPMV FT YAENEGEVFLGRSVTKTTHVSEATMQKVDSEIRRIIDEQYGVARKILEDNRARVEVMTS FT ALLEWETIDADQIDDIVNDRPPRPPKTPQGPSDTFDTPPTGLAAGGNTAAAV" FT misc_feature complement(1126003..1126635) FT /note="HMMPfam hit to PF01434, Peptidase family M41" FT misc_feature complement(1126651..1127214) FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA)" FT misc_feature complement(1126846..1126902) FT /note="ScanRegExp hit to PS00674, AAA-protein family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(1127176..1127199) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(1127362..1127385) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(join(1127413..1127478,1127713..1127763)) FT /note="2 probable transmembrane helices predicted for FT BP1077 by TMHMM2.0 at aa 5-22 and 100-122" FT misc_feature complement(1127686..1127778) FT /note="Signal peptide predicted for BP1077 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.702) with cleavage site FT probability 0.419 between residues 31 and 32" FT CDS complement(1128016..1128648) FT /transl_table=11 FT /gene="rrmJ" FT /gene_synonym="ftsJ" FT /gene_synonym="mrsF" FT /locus_tag="BP1078" FT /product="ribosomal RNA large subunit methyltransferase j" FT /EC_number="2.1.1.-" FT /note="Similar to Escherichia coli ribosomal RNA large FT subunit methyltransferase J RrmJ or FtsJ or MrsF or B3179 FT or Z4541 or Ecs4058 SW:RRMJ_ECOLI (P28692) (209 aa) fasta FT scores: E(): 1.1e-30, 46.07% id in 204 aa, and to Neisseria FT meningitidis putative cell division protein FtsJ or Nma1008 FT or Nmb0799 TR:Q9JQX5 (EMBL:AL162754) (206 aa) fasta scores: FT E(): 1.3e-39, 53.39% id in 206 aa" FT /protein_id="CAE41377.1" FT /translation="MAKNKFSKDWIHQHINDPYVKLAQQKGYRARAAFKLLEILDAEKL FT MRRGDVVVDLGSAPGSWSQVARERLAGPGGVVDGRIIALDLLPMEPVAGVEFIQGDFRE FT EEVLEQLARMVDGQPVDLVISDMAPNLSGVGVADSARIQHVCELALEFACAHLKPNGAL FT IVKAFHGSGFSQIVQSYKQRFKRVVERKPKASRDKSSETFLVARDLK" FT misc_feature complement(1128019..1128615) FT /note="HMMPfam hit to PF01728, FtsJ-like methyltransferase" FT CDS 1128667..1129269 FT /transl_table=11 FT /locus_tag="BP1079" FT /product="conserved hypothetical protein" FT /note="Its N-terminal region is similar to Neisseria FT meningitidis hypothetical protein Nmb0800 TR:Q9K026 FT (EMBL:AE002433) (94 aa) fasta scores: E(): 2.7e-09, 47.87% FT id in 94 aa, and to Escherichia coli hypothetical protein FT YhbY or B3180 or Z4542 or Ecs4059 SW:YHBY_ECOLI (P42550) FT (97 aa) fasta scores: E(): 1.1e-07, 46.59% id in 88 aa" FT /protein_id="CAE41378.1" FT /translation="MPILELTSRERSDLRSAAHPLRPVVLIGDNGLTDAVLKEIDLALT FT AHELIKVRAGGDDREAREAMLATICDTLSCAAVHHLGKTLILFRPDLRAAAAKAAADTP FT AKRRPSEPHTPKKMAAEGKRLTKTRPARKAAEAAAPAAGARPGRDDLNQAGRPARPSTR FT KASPGHAIPRRSGSALSLRAGARGGLAGRKPARANKR" FT misc_feature 1128721..1128933 FT /note="HMMPfam hit to PF01985, Uncharacterised protein FT family UPF0044" FT misc_feature 1128895..1128918 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT repeat_region 1129319..1129350 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1129319..1130371 FT CDS 1129421..1130371 FT /transl_table=11 FT /locus_tag="BP1080" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41379.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIVHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 1129679..1129744 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1129802..1130335 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1130340..1130371) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 1130368..1130952 FT /pseudo FT /transl_table=11 FT /locus_tag="BP1081" FT /product="C-terminal region of a putative membrane protein FT (pseudogene)" FT /note="Pseudogene. This is the C-terminal region of FT BP2524A, which was disrupted by the insertion of IS481 FT element. Similar to Rhizobium loti Mlr6486 protein FT TR:Q989C5 (EMBL:AP003009) (305 aa) fasta scores: E(): FT 1.9e-10, 32.05% id in 156 aa, and to Caulobacter crescentus FT hypothetical protein Cc2940 TR:Q9A497 (EMBL:AE005958) (362 FT aa) fasta scores: E(): 9.2e-09, 29.48% id in 173 aa" FT misc_feature 1130863..1130931 FT /note="2 probable transmembrane helices predicted for FT BP1081 by TMHMM2.0 at aa 10-32 and 160-182" FT CDS complement(1131174..1131974) FT /transl_table=11 FT /locus_tag="BP1083" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE41381.1" FT /translation="MQAVSLPAISGWQWVRDGLRLFMKQPLAMFTWAMAISLLLLFATY FT TPLVGPLLFVALMPSITLMTLSACKHVEADRVMLPSMWLQPLKKPGVFKKLFLMGMLYV FT GLCLAAGLLAFLPFSSSLAEGVRMASANNLAPIMTAMRAPLLVFTALYVIIAAVFWHAP FT VLVGWHGLRLLQALFFSGIACWRNKWPFLVYGVVWILVFLFIDLCIGLLIGMGVPDTLA FT GTLQVPVTIIAGGVLYCSFYPAYTSVFGVNDAHAGLDNSDSAHA" FT misc_feature complement(join(1131222..1131287,1131333..1131398, FT 1131462..1131527,1131621..1131686,1131768..1131833, FT 1131846..1131911)) FT /note="6 probable transmembrane helices predicted for FT BP1083 by TMHMM2.0 at aa 21-43, 47-69, 96-118, 149-171, FT 192-214 and 229-251" FT CDS complement(1132018..1133004) FT /transl_table=11 FT /gene="thrB" FT /locus_tag="BP1084" FT /product="homoserine kinase" FT /EC_number="2.7.1.39" FT /note="Similar to Pseudomonas aeruginosa homoserine kinase FT ThrB or Pa5495 SW:KHSE_PSEAE (P29364) (316 aa) fasta FT scores: E(): 6.6e-40, 43.17% id in 315 aa, and to FT Caulobacter crescentus homoserine kinase Cc3364 TR:Q9A342 FT (EMBL:AE005998) (317 aa) fasta scores: E(): 4.3e-38, 39.31% FT id in 323 aa" FT /protein_id="CAE41382.1" FT /translation="MAVFTSVSDQDARTLLARFDLGDLVSLRGITAGIENTNFFLNTTR FT GEYVLTLFEVLTQEQLPFYIELMYHLAARGIPVPQPQTLRDGTRLTTLHGKPCAIVTRL FT PGGYEPAPGPDHCRLAGATLARAHLAGQDFPLRQPNLRGLPWWQATAPKVLPFLEPGQA FT RLLEAELADQQAHAATALWQSLPSGPAHCDLFRDNVLFAGTFDDPLMGGFIDFYFAGCD FT TWLFDVAVSVNDWCIVRDTGEFVPELVHGWLQAYAEVRPFTDAERQAWPVMLRAAALRF FT WLSRLYDFYLPRPAQTLKPHDPRHFERVLQARHRHPAPDLPKSEAAA" FT CDS 1133144..1134157 FT /transl_table=11 FT /locus_tag="BP1085" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2795 TR:Q9I048 (EMBL:AE004707) (332 aa) fasta FT scores: E(): 4.8e-62, 54.25% id in 317 aa, and to Neisseria FT meningitidis hypothetical protein Nma2139 TR:Q9JST8 FT (EMBL:AL162758) (336 aa) fasta scores: E(): 5.6e-62, 51.54% FT id in 324 aa" FT /protein_id="CAE41383.1" FT /translation="MSSPDWRLCVAPMIDVTDRHCRYFHRLLAPRARLYTEMITTGALL FT HGDVARHLDFDAAEHPVALQLGGSEPDALAQAARLGRQWGYDEINLNCGCPSERVQRGA FT FGACLMAEPALVADCMKAMQDAVDIPVTVKHRLGLDYDESYGFVRDFVGQIYDTGCRVF FT VVHARNAVLKGLSPKDNREIPPLRYDVARQLKRDFPDCVIVLNGGLADAQAAQAVAGEF FT DGVMLGRAAWHTPRVLSEVSLQWWPAIRLPSDAQVVDAMMQYAATQIARGVPLRVMTRP FT LLGLVNGQAGARRWRRLLSDPVRLAANDPSLLYEAWRSLQGAPRERDACADPLPAV" FT misc_feature 1133168..1134106 FT /note="HMMPfam hit to PF01207, Uncharacterized protein FT family UPF0034" FT misc_feature 1133408..1133464 FT /note="ScanRegExp hit to PS01136, Uncharacterized protein FT family UPF0034 signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(1134154..1135104) FT /transl_table=11 FT /locus_tag="BP1086" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41384.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 1134154..1134185 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1134154..1135206) FT misc_feature complement(1134190..1134723) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1134781..1134846) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1135175..1135206) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1135217..1135675) FT /transl_table=11 FT /locus_tag="BP1087" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium tuberculosis hypothetical FT 15.1 kDa protein Rv2406c or Mtcy253.14 TR:P71737 FT (EMBL:Z81368) (142 aa) fasta scores: E(): 1.6e-11, 26.61% FT id in 139 aa, and to Pseudomonas aeruginosa hypothetical FT protein Pa0250 TR:Q9I6N9 (EMBL:AE004463) (144 aa) fasta FT scores: E(): 5e-10, 33.09% id in 142 aa" FT /protein_id="CAE41385.1" FT /translation="MLKVSEILRVKGDTLYTASPDTHVSVAVQTMSEQDIGSLVIMESG FT MLAGMLTFREIIRHIDQHGGNVGDTTIRAIMDDAPVSVSPNTSADEVQRLMLEKHARYI FT PVMDGPTLLGVISFYDMAQAIVAAQQFENNMLKAYIRDWPMESAPSKP" FT misc_feature complement(1135298..1135456) FT /note="HMMPfam hit to PF00571, CBS domain" FT misc_feature complement(1135493..1135651) FT /note="HMMPfam hit to PF00571, CBS domain" FT CDS complement(1135712..1137025) FT /transl_table=11 FT /locus_tag="BP1088" FT /product="putative membrane protein" FT /note="Its N-terminal region is similar to Escherichia coli FT ribonuclease BN rbn or B3886 or Z5425 or Ecs4809 FT SW:RBN_ECOLI (P32146) (290 aa) fasta scores: E(): 1.8e-33, FT 39.2% id in 250 aa, and to Neisseria meningitidis FT ribonuclease BN, putative Nmb0524 TR:Q9K0R0 (EMBL:AE002408) FT (406 aa) fasta scores: E(): 1.2e-36, 36.36% id in 396 aa" FT /protein_id="CAE41386.1" FT /translation="MEPHAESAAAGQAAPPEKRRASWFTRMGRVVRFAGQRADEQKLLQ FT VASSLTFTTVLAIVPMLAVVLSLFTAFPVFQEFRVALEDFLANSLMPPSVSDNIMDYLN FT QFARQATRLTAIGGAFLIVTSLLLIMTIDKTFNDIWQVTRQRPLPQRALVYWAVITLGP FT VVAGASLWATSFVARESLGLVRDVPEAVSVAISFIPLVLTGLGFAALFVVVPNRRVYWK FT DALVGGFGTAIVLELMKAGFAYYLTRFPAYTVIYGAFATLPIFLLWIYLSWLAVLFGAT FT VAASAPLIRLGRWEINRHAGAPFIDALGVLRVLHAAQGSRPAGRSANALAKRLRLHHDE FT LNAVLEALEDMGLVARTAEQRWVLTCDPRTTTLEPVFDRFLLDRGQPRLRDEPEIAAVA FT AGVLGQGPDPTLADLAGVAQNTDIGPAAAVLQLETGKK" FT misc_feature complement(join(1136159..1136224,1136285..1136350, FT 1136390..1136455,1136501..1136566,1136630..1136695, FT 1136822..1136887)) FT /note="6 probable transmembrane helices predicted for FT BP1088 by TMHMM2.0 at aa 46-68, 110-132, 153-175, 190-212, FT 225-247 and 267-289" FT CDS 1137043..1137414 FT /transl_table=11 FT /locus_tag="BP1089" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma0801 TR:Q9JVK4 (EMBL:AL162754) (117 aa) fasta FT scores: E(): 1.1e-13, 45.45% id in 99 aa, and to Vibrio FT cholerae hypothetical protein Vc2167 TR:Q9KQ37 FT (EMBL:AE004288) (145 aa) fasta scores: E(): 0.00097, 31.13% FT id in 106 aa" FT /protein_id="CAE41387.1" FT /translation="MNAELNPTLRRGAVACLLALIVLCVAWETVLAPIRPGGSWLFLKA FT LPLAFPLRGVLRGNLYTFQWAAMLVLLYLMEGVVRAMSDPAPLSAALGGVEIVLSGGFF FT LCAILYVRPAKRAARRSRA" FT misc_feature 1137043..1137120 FT /note="Signal peptide predicted for BP1089 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.844) with cleavage site FT probability 0.744 between residues 26 and 27" FT misc_feature join(1137076..1137144,1137307..1137375) FT /note="2 probable transmembrane helices predicted for FT BP1089 by TMHMM2.0 at aa 12-34 and 89-111" FT CDS 1137411..1138874 FT /transl_table=11 FT /locus_tag="BP1090" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical protein FT YdiU or B1706 SW:YDIU_ECOLI (P77649) (478 aa) fasta scores: FT E(): 1.9e-77, 48.33% id in 480 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa5023 TR:Q9HUE6 FT (EMBL:AE004915) (486 aa) fasta scores: E(): 1.1e-76, 46.15% FT id in 494 aa" FT /protein_id="CAE41388.1" FT /translation="MKWLRLQDLPTDNSFAALPAEFYTRLQPRPPAAPRLLHANAEAAA FT LIGLDPAEFSTQAFLDVFSGHAPLPGGDTLAAVYSGHQFGVWAGQLGEVRGPAGGWELQ FT LKGAGMTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRSLALVVSDDPVMRETVET FT AAVVTRMAPSFVRFGSFEHWSARRQPEQLRVLADYVIDRFYPECRVAGAGRLDGEHGEI FT LGLLAAVTRRTALLMADWQAVGFCHGVMNTDNMSILGLTLDYGPYGFMDTFQLGHICNH FT SDSEGRYAWNRQPSVGLWNLYRLASSLHTLAPDPEALRAVLDGYEAVFTQAFHGRMAGK FT LGLPQFLPEDETLLDDLLQLMHQQGADFTLAFRRLGEAVRGQRQPFEDSFIDRAAAGAW FT YDRLAARHASDGRAAQARAAAMDEVNPLYVLRNHLAEQAIRAAARGDAGEIDILLKLLR FT NPYKHQPGYDAYAGLAPDWAAGLEVSCSS" FT misc_feature 1137447..1138793 FT /note="HMMPfam hit to PF02696, Uncharacterized ACR, FT YdiU/UPF0061 family" FT CDS 1139015..1139743 FT /transl_table=11 FT /locus_tag="BP1091" FT /product="probable two-component response regulator" FT /note="Similar to Rhodobacter sphaeroides FT DmsO/TmaO-response regulator DorR TR:O30741 (EMBL:AF016236) FT (232 aa) fasta scores: E(): 8.7e-18, 33.76% id in 234 aa, FT and to Pseudomonas aeruginosa probable two-component FT response regulator Pa4983 TR:Q9HUI2 (EMBL:AE004911) (244 FT aa) fasta scores: E(): 2.2e-17, 33.33% id in 243 aa" FT /protein_id="CAE41389.1" FT /translation="MLVADGLLRIGLLEDDEDFRDELALGLGGYGFNVVCACGDAPSLY FT RFLQSQSCDIVILDANVPGEDGFSVATRLRAQSTTGIVMLTGRGALEDRVRGLEGGADV FT YLTKPVDLLELSSVIRSLARRMRLARGAQGQAPASAGDTQRGVGGWSLQEGGWVLVGPD FT GVSLHLNAQERIFMTSLLQSGGDAVTRQMLAEAFQPGNPDDFEPRRVDVMVSRLRAKAQ FT SAGFKLPVLSVRGQGYVFAA" FT misc_feature 1139036..1139371 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS complement(1139725..1142574) FT /transl_table=11 FT /locus_tag="BP1092" FT /product="probable two-component histidine kinase" FT /note="Similar to Escherichia coli sensor protein KdpD or FT B0695 SW:KDPD_ECOLI (P21865) (894 aa) fasta scores: E(): FT 6.1e-11, 30.9% id in 233 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa1433 TR:Q9I3R4 (EMBL:AE004573) (650 FT aa) fasta scores: E(): 2.9e-27, 24.77% id in 654 aa" FT /protein_id="CAE41390.1" FT /translation="MSISRRLFLSVVLLAGLLVIGTQAAGLAANYRASVERQKRHVETA FT AASLAWVLSQSHTTPAQWQTLATDLQRHGGYALVRIQEHYTGRMIEAGQLSEAPARADG FT SLQQGRASQIVATRTFRSADGTYVGSVAVYNPVIPILEAPFLTESVAQLVLIVAGLLIW FT YSYMSRLHDRLQRGPLKRLAHNLAHIGQAGVDPKLAEGLPRELQPLGTALVQSHQRVHD FT QLRQQRARIDALENETYHDPVTRLPNRKFFNESLRRAVQRDGGVDGHLLIFRQRDMAEI FT NRQMKREATDQWLRLACAQLSKTIKEQAGAGAVLVRINGSDFAALLPGLPSPRAAVLAE FT RLRRELRVLRLPLRTHGWCRWAMVLTPYTVGEQVSDILARLDHALMRAEIAESDEVEPA FT FSQTGNRIDGEYGWQDILTRALEQHRFFLTLYPRQDAEGQVLHTEAQLTLRDQDSPEPL FT HAQLFMPPAARLGLSADCDIQAIRMSMDQLVARDGDMVVRVSLPSLEQAHFLKRLEDVL FT RDRPEQAGHLIIEIDAHGLVDYFHNVQALCEIAARTGVRVGVRRLSEQFAALERLHQLP FT LAYLKIGGSFVQGITRSPGNQQLADTVIQVARTLDIPAYAEDAEEPVARELLQAIGFRL FT MQEADNADFLAPRHNWIADLPAAPAAAEDNGDTAAHAPTRTRATDGRPWPPHELGMQRK FT RQEQSDRRLAEVARALEAQRQVHALLSHELRTPAATISAAAQSLEIILAGSGQEVDSRL FT ARIRRAVTRMIELMNQVLSPERLRDQALTLRPEPIELGELARDTVEGMRLDTAHPLVLN FT AEAAVPAWCDPLLTALVLRNLIHNAVKYSPADQPVHIDVGLSYGAHGATAWVAVTDHGP FT GISDDESQRIFEEHYRRAAHRETPGSGLGLHLARQICQSQDGTLTVQTQLGQGARFVMT FT LPTPGQAYTDGGNAQAANT" FT misc_feature complement(1139770..1140114) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature complement(1140238..1140441) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT misc_feature complement(1140658..1141350) FT /note="HMMPfam hit to PF00563, Domain of unknown function FT 2" FT misc_feature complement(1141390..1141884) FT /note="HMMPfam hit to PF00990, GGDEF domain" FT misc_feature complement(1142488..1142553) FT /note="1 probable transmembrane helix predicted for BP1092 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(1142503..1142574) FT /note="Signal peptide predicted for BP1092 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.656 between residues 24 and 25" FT repeat_region 1142685..1142716 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1142685..1143737 FT CDS 1142787..1143737 FT /transl_table=11 FT /locus_tag="BP1093" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41391.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 1143045..1143110 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1143168..1143701 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1143706..1143737) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 1143905..1144729 FT /transl_table=11 FT /gene="livG" FT /locus_tag="BP1094" FT /product="high-affinity branched-chain amino acid transport FT ATP-binding protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport ATP-binding protein FT LivG or B3455 or Z4825 or Ecs4302 SW:LIVG_ECOLI (P22730) FT (255 aa) fasta scores: E(): 7e-31, 41.73% id in 254 aa, and FT to Pseudomonas aeruginosa high-affinity branched-chain FT amino acid transport ATP-binding protein BraF or Pa1071 FT SW:BRAF_PSEAE (P21629) (255 aa) fasta scores: E(): 3.5e-34, FT 45.85% id in 253 aa" FT /protein_id="CAE41392.1" FT /translation="MAQSEQDPLLRVDGVTLAFGGVKALTGVGFAVSSGSITTVIGPNG FT AGKTSLFNTISGFYTPDAGSIHFLGQDITRLPAPRRARLGLARSFQNIALFRGMTVLDN FT IKLGRHAHLRSNVLDALLYLGRARREEVALRADIETRIIDFLEIDHIRHAPVAALSYGL FT QKRVELARALAMQPRILMLDEPVAGMNREETEDMARFILDARAEWGVTVLMVEHDMGMV FT MDLSDHVVVLNFGQVIADGTPAQVQADPEVIKAYLGAGEVGELRRRLAAQAA" FT misc_feature 1144007..1144609 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 1144028..1144051 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 1144729..1145607 FT /transl_table=11 FT /gene="livH" FT /locus_tag="BP1095" FT /product="high-affinity branched-chain amino acid transport FT system permease protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport system permease protein FT LivH or B3457 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: FT E(): 4.1e-17, 33.88% id in 304 aa, and to Salmonella FT typhimurium high-affinity branched-chain amino acid FT transport system permease protein LivH or LivA FT SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 3.9e-18, FT 35.19% id in 304 aa" FT /protein_id="CAE41393.1" FT /translation="MDALFFLEVTLAGLGGGALYALAALAFVIVYKATRVVNIAIGEFL FT MMGAYAFYAFAADMQWPVWAAIGGAILASALLGALVERVAIRPMLGESPISVFMITVGL FT ASILVGVVELVWTADQRRLPEFMPRDPVMIGEAFVAPKVFYGFWVAVGLAALVLLVFRY FT WRGGVALRATAADQGAAYAMGINVPRVFSLAWAAAGAMAAVARLIVGAIGGISSSMGAF FT GLSVLVVVIVGGLDSVAGALLGGLFIGLVEAWAGAYLGGEYKLLVTFVVLVATLMARPY FT GLFGTREIERL" FT misc_feature 1144729..1144797 FT /note="Signal peptide predicted for BP1095 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.805) with cleavage site FT probability 0.421 between residues 23 and 24" FT misc_feature 1144744..1145592 FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT misc_feature join(1144756..1144815,1144834..1144893,1144903..1144971, FT 1145008..1145076,1145155..1145223,1145296..1145364, FT 1145407..1145475,1145494..1145562) FT /note="8 probable transmembrane helices predicted for FT BP1095 by TMHMM2.0 at aa 10-29, 36-55, 59-81, 94-116, FT 143-165, 190-212, 227-249 and 256-278" FT CDS 1145611..1146507 FT /pseudo FT /transl_table=11 FT /gene="livM" FT /locus_tag="BP1096" FT /product="high-affinity branched-chain amino acid transport FT system permease protein (Pseudogene)" FT /note="Pseudogene. There is a large deletion, following FT codon 299, within this CDS relative to parapertussis and FT bronchiseptica. This deletion removed the stop codon for FT this CDS. Similar to Escherichia coli high-affinity FT branched-chain amino acid transport system permease protein FT LivM or B3456 SW:LIVM_ECOLI (P22729) (425 aa) fasta scores: FT E(): 1.2e-10, 33.22% id in 295 aa, and to Rhizobium loti FT ABC transporter, permease protein Mlr5222 TR:Q98CB4 FT (EMBL:AP003006) (346 aa) fasta scores: E(): 3.8e-27, 39.5% FT id in 281 aa" FT misc_feature 1145623..1146507 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT misc_feature 1146043..1146060 FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT variation 1146505..1146507 FT /note="Large deletion in pertussis, relative to FT parapertussis and bronchiseptica, following this codon. FT This deletion may have also removed the N-terminal region FT of the downstream CDS, BP1097" FT CDS 1146512..1147627 FT /transl_table=11 FT /gene="livK" FT /locus_tag="BP1097" FT /product="putative amino acids binding protein" FT /note="Due to a possible large deletion event immediately FT upstream, this CDS may be lacking part of its amino FT terminal region. Similar to Escherichia coli FT leucine-specific binding protein precursor LivK or B3458 FT SW:LIVK_ECOLI (P04816) (369 aa) fasta scores: E(): 1.2e-09, FT 23.1% id in 329 aa, and to Pseudomonas aeruginosa leucine-, FT isoleucine-, valine-, threonine-, and alanine-binding FT protein precursor BraC or pa1074 SW:BRAC_PSEAE (P21175) FT (373 aa) fasta scores: E(): 3.5e-10, 22.74% id in 321 aa" FT /protein_id="CAE41395.1" FT /translation="MLAAPVAQAAEDLVIGGSIPLSGVFAFAGQGIHAGIGDYVKMVNE FT EGGVAGRKLVYVPEDTAYKVDASVAAFKKIASQNKVNFYYGDSTGFSKTINAELNRAGT FT MIMTGASFATELNDPAKYPNQFMLGPDYTEMFGILLRYIAKEQPGAKVAFVYSDTEFGR FT DPITSSRAVAEKLGLKVVTEIMTPPGSVDVSTEVIKLRRAAPDYTIFHGYVLAPIPEFV FT GQGKRMGLKTRYMGTFWTMDNSTVMQMGEDADGFMGVMPYRYYYDDAADAPMLKKIRAM FT RPDYQSTGYMQGFLAAMLFAETAKRTLAADKPLTAANMKATLDAIKDFDTGGLIGVPIS FT IKGNSIPVGRIYRADAKQKKMLPVSDWIVLD" FT CDS 1147635..1148450 FT /transl_table=11 FT /gene="livF" FT /locus_tag="BP1098" FT /product="high-affinity branched-chain amino acid transport FT ATP-binding protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport ATP-binding protein FT LivF or B3454 SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: FT E(): 1.2e-26, 43.75% id in 240 aa, and to Rhizobium loti FT ABC transporter, ATP-binding protein Mlr5224 TR:Q98CB2 FT (EMBL:AP003006) (268 aa) fasta scores: E(): 2.1e-38, 51.41% FT id in 247 aa" FT /protein_id="CAE41396.1" FT /translation="MTTSAAPVLAINNIEVVYNKAVQVLRGLSLEVPRGGIVALLGSNG FT AGKSTTLKAVSRLLELEDGALVSGAIRFQGSDTAGRAPQALVRAGLAHVMEGRRVFEDL FT TVEENLVAAAYALSGRAGARPDFDLVYGYFPRLYERRRGLAGYLSGGEQQMLAIGRALI FT AQPSLMLLDEPSLGLSPMLVESIFSIIARINAEQGVSMLLVEQNASVALAVAHYGYIME FT TGKVVIGGSAERLAGDPDVREFYLGVGGGGEARGFRQLKHYKRRKRWLS" FT misc_feature 1147737..1148306 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 1147758..1147781 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1148076..1148120 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 1148447..1150312 FT /transl_table=11 FT /locus_tag="BP1099" FT /product="putative long-chain fatty-acid--CoA ligase" FT /note="Similar to Vibrio cholerae FT long-chain-fatty-acid--CoA ligase, putative Vc2484 FT TR:Q9KP89 (EMBL:AE004318) (601 aa) fasta scores: E(): FT 2e-51, 31.82% id in 597 aa, and to Aeropyrum pernix 651aa FT long hypothetical long-chain-fatty-acid--CoA ligase Ape1307 FT TR:Q9YCF0 (EMBL:AP000061) (651 aa) fasta scores: E(): FT 5.9e-68, 34.65% id in 629 aa" FT /protein_id="CAE41397.1" FT /translation="MTRASMHPRAEGLPRGDWPALTLPQMLREQARRQPARIALRQKDY FT GIWQPIDWATYWRRACQVALGLRAAGLEPGGKVAIIAENRLEWLLAQMGAGVLGAVPVG FT VYCTSPAAEVGYVLEHAEVDMVVCEDQEQTDKVLEVAARLPGLRRIVVMETKGLRNHAE FT AERARMISFAELEARGAQCGAAEQARLEQALDAQTLDDVGLMIYTSGSTGKPKGVMISY FT RNMRGVAPGIADRLDMDAGSVHLSYLPLCHVAEQMLSTFVPVYLGSQVNFGESIRTVQE FT DLREVAPTVFLGVPRIWEKLHAAISIKMQESGRLRRWLYARALRGCAPFLELSRARYGW FT RERLVYGWHYALILRALHNFVGLRRVKVAMTGAAPIPPEVLRYFRTLGIPLIEVYGLTE FT STGMIFGQHPDRVRVGTVGEPTLGVQARVGEQGELLVRGEMVFHGYYRNPQASADTVCD FT GWLHTGDVVALEDGQYRIVDRLKDIMITAGGKNLTPSEIENAVKGSPYVKECIAIGDQR FT RYVAALIQIEYDTVAKWAELNGIAYTHFRSLAEHPRVRQLVHGEVERANAALAQVARVK FT RFHLLVKELDHDDGEVTATMKVRRASIAQAYRSEIEALYRQEEAA" FT misc_feature 1148609..1149982 FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature 1149059..1149094 FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 1150391..1151023 FT /transl_table=11 FT /locus_tag="BP1100" FT /product="probable TetR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa2885 TR:Q9HZW2 (EMBL:AE004714) FT (198 aa) fasta scores: E(): 3.9e-24, 45.45% id in 176 aa, FT and to Pseudomonas fluorescens putative transcriptional FT regulator Pfi2 TR:Q9RFR4 (EMBL:AF173683) (207 aa) fasta FT scores: E(): 6.4e-23, 43.88% id in 180 aa" FT /protein_id="CAE41398.1" FT /translation="MHASSRGTEEAAGSPRRADVIATAGELFRLHGYERTTVRELARAV FT GLQSGSLFHHFRSKEEILVAVMSEGIEEVLEQGALALAHYQDPGARLAALFRVHMWSML FT KGAGGDAMNALVYEWRSLSPAARGGVKALSDRYEDMWQDAVDDALRAGLVDGDARVIKR FT YLLGGLNLTVQWYRPQGRLAPGDFIEAMLRAALPGLPPGTGAWPLRD" FT misc_feature 1150448..1150588 FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT misc_feature 1150484..1150576 FT /note="ScanRegExp hit to PS01081, Bacterial regulatory FT proteins, tetR family signature." FT misc_feature 1150496..1150561 FT /note="Predicted helix-turn-helix motif with score 1174 FT (+3.19 SD) at aa 36-57, sequence TTVRELARAVGLQSGSLFHHFR" FT CDS complement(1151020..1151322) FT /transl_table=11 FT /locus_tag="BP1101" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE41399.1" FT /translation="MAALAYLLLSRRARPAAAPRPLRALPAGRRRMPLYLGVAAVLALA FT GALLSAFLLVTAMAGGSGGGYRGQADFLQQVAIVLLAIGVVCAIAALVSFFRQRG" FT misc_feature complement(join(1151035..1151100,1151146..1151211)) FT /note="2 probable transmembrane helices predicted for FT BP1101 by TMHMM2.0 at aa 37-59 and 74-96" FT misc_feature complement(1151146..1151322) FT /note="Signal peptide predicted for BP1101 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.797) with cleavage site FT probability 0.725 between residues 59 and 60" FT CDS complement(1151365..1152885) FT /transl_table=11 FT /gene="lysS" FT /gene_synonym="herC" FT /gene_synonym="asuD" FT /locus_tag="BP1102" FT /product="lysyl-tRNA synthetase" FT /EC_number="6.1.1.6" FT /note="Similar to Escherichia coli lysyl-tRNA synthetase FT LysS or HerC or AsuD or B2890 SW:SYK1_ECOLI (P13030) (504 FT aa) fasta scores: E(): 3.6e-115, 59.43% id in 498 aa, and FT to Neisseria meningitidis lysyl-tRNA synthetase LysS or FT Nma1638 TR:Q9JTT7 (EMBL:AL162756) (503 aa) fasta scores: FT E(): 1e-126, 62.32% id in 507 aa" FT /protein_id="CAE41400.1" FT /translation="MTDQSPAPTAQDENRLIAERRAKLARLRETGVAFPNNFVPDAHAA FT DLHARYDGLDQEALTAAAVTVKVAGRMMLKRVMGKASFATLQDGSGRIQIYLERGTLGE FT EAYAAFKQWDIGDIIAIEGPVFKTNKGELSVHANSARLLSKSLRPLPDKFHGVADQELR FT YRQRYVDLIMTDATRRTFEARSKAVGGIRQAMLNAGFLEVETPMLHPIPGGAAAKPFVT FT HHNALDMQMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAY FT ADYRWLMDFTEDLIRQAAIAATGSAVLSYQDRELDLSQPFDRLTICEAILKYAEGYTQA FT QLDDPAFVRAELRKLGANVEGPPLARAGLGALQLALFEETAEAKLWRPTYIIDYPVEVS FT PLARASDTRDGITERFELFITGREIANGFSELNDPEDQAERFRAQVEAKDAGDEEAMYF FT DADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPSIRDVILFPHLRRED" FT misc_feature complement(1151374..1152411) FT /note="HMMPfam hit to PF00152, tRNA synthetases class II FT (D, K and N)" FT misc_feature complement(1151428..1151457) FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT misc_feature complement(1152058..1152111) FT /note="ScanRegExp hit to PS00179, Aminoacyl-transfer RNA FT synthetases class-II signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(1152457..1152690) FT /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding FT domain" FT CDS complement(1152892..1153647) FT /transl_table=11 FT /locus_tag="BP1103" FT /product="probable short chain dehydrogenase" FT /note="Similar to Homo sapiens sepiapterin reductase Spr FT SW:SPRE_HUMAN (P35270) (261 aa) fasta scores: E(): 2.1e-15, FT 38.4% id in 250 aa, and to Bacillus subtilis YueD protein FT TR:O32099 (EMBL:Z99120) (243 aa) fasta scores: E(): FT 1.1e-20, 36.25% id in 251 aa" FT /protein_id="CAE41401.1" FT /translation="MTDTVAILTGASRGLGAALARGLLAPGTRLITLARRADPDLEAAA FT RTRGASLEQVQVDLSDPAAAGAAAKRLCAALPRDARRYLLINNAGTVSPVAQAAGLTDG FT AAIAGALNLNVTAVVLLTARFVAALQGLPADRRVLNISSGAGRNPNAGWGVYCAAKAAL FT DMYSRVLKQEQGQDGVRVVALAPGIVDTDMQGAIRASDPADFPALERFREFHATGKLSA FT PADVAARILAYLDRDDFGTTEIDDIRNYQ" FT misc_feature complement(1153072..1153638) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT CDS complement(join(1153677..1154699,1154701..1154781)) FT /transl_table=11 FT /gene="prfB" FT /gene_synonym="supK" FT /locus_tag="BP1104" FT /product="peptide chain release factor 2" FT /note="Similar to Escherichia coli peptide chain release FT factor 2 PrfB or SupK or B2891 SW:RF2_ECOLI (P07012) (365 FT aa) fasta scores: E(): 2.3e-90, 64.26% id in 361 aa, and to FT Neisseria meningitidis peptide chain release factor 2 PrfB FT or Nma0224 TR:Q9JWV4 (EMBL:AL162752) (367 aa) fasta scores: FT E(): 1.7e-93, 65.12% id in 367 aa. Contains a naturally FT occurring frameshift following an in-frame UGA stop codon FT after Leu 27. Also similar to BP0678, 40.571% identity in FT 350 aa overlap." FT /protein_id="CAE41402.1" FT /translation="MEAERQNQLVARLEDYAEREQALRRYLDYDAKSERLQVVNAELED FT PAIWNDPKHAQDLGREKKSLEDVVETLTELGSGLADSCELVELALADSDDATLEAIEHD FT ADRFQEKLETLEFRRMFANPADPLNCFVDIQAGAGGTEAQDWASMLLRQYLKYAERKGF FT KAEILEESEGDVAGLKSATIKIEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASV FT FVYPEVDESFEVEVNPADLRIDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRS FT QHRNRAEAMQMLKSKLYELEMRNRMTEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRT FT NVEISNTQKVLDGDLDPFIQASLKQGV" FT misc_feature complement(1153764..1154102) FT /note="HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase FT domain" FT CDS complement(1154884..1156584) FT /transl_table=11 FT /gene="recJ" FT /locus_tag="BP1105" FT /product="single-stranded-DNA-specific exonuclease" FT /EC_number="3.1.-.-" FT /note="Similar to Escherichia coli FT single-stranded-DNA-specific exonuclease RecJ or B2892 FT SW:RECJ_ECOLI (P21893) (577 aa) fasta scores: E(): 2.1e-86, FT 46.6% id in 575 aa, and to Neisseria meningitidis putative FT single-stranded-DNA-specific exonuclease RecJ or Nma1052 FT TR:Q9JV09 (EMBL:AL162755) (566 aa) fasta scores: E(): FT 3.2e-110, 54.32% id in 567 aa" FT /protein_id="CAE41403.1" FT /translation="MVSPRLIIRTADLQACQHLEAAGIHPLLSRLWAARGVIHPEQTRM FT AWPALLPPDRLTHSAHAAAVLADAIEQGKRLLIVADYDCDGATACAVGLRALSAMGADV FT DFLVPNRFETGYGLSPAVVELACRHRRGKPDIIITVDNGIASVDGVAAANAAGIGVVIT FT DHHLPGDTLPEALAIVNPNQPGCGFGSKHLAGVGVIFYMMLALRAELRRRGVYAPDGGP FT RLDALSDLVALGTVADVVKLDANNRLLVTQGLQRMRAGRMQPGVRALFAVAGREPRTAS FT GFDLGFALGPRINAAGRLADMSLGIACLTTDDEAQTLEMARELDNINRERRTIEAEMRD FT QALAAMEAPDAAAGATVCVFDPGWHQGVVGLVASRLKEKFWRPTLAFAPAGEDELRGSG FT RSIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAGLTLGSGDFAAFAPAFDAAVRELTGR FT DRFEPLLETDGSLESGYANAEVAGLLQQQVWGAGFAAPLFLDEFTVRSQRLVGGKHLKL FT ALERGHQRFDAIWFGHDQSLPERIQAAYRLEQNIWNGMVSVQLVIEHAA" FT misc_feature complement(1155235..1155444) FT /note="HMMPfam hit to PF02272, DHHA1 domain" FT misc_feature complement(1155862..1156380) FT /note="HMMPfam hit to PF01368, DHH family" FT CDS complement(1156566..1157543) FT /transl_table=11 FT /locus_tag="BP1106" FT /product="putative exported protein" FT /note="Similar to Xanthomonas campestris regulatory protein FT RpfE TR:Q9L4D4 (EMBL:AJ245997) (306 aa) fasta scores: E(): FT 6e-10, 30.59% id in 317 aa, and to Xylella fastidiosa FT hypothetical protein Xf1109 TR:Q9PEB9 (EMBL:AE003946) (293 FT aa) fasta scores: E(): 1.2e-06, 29.06% id in 234 aa" FT /protein_id="CAE41404.1" FT /translation="MALTGTRTTIAAMLIVIPGALPAAAVAPELARLLPQHAPTLHGWL FT QAASARVQAFDAARQGCTPFEGWQLEQAGYQPQPGLPLGAGLGPLRAAGGTPGQPVWLA FT DLAHLMLGADQAALLDPALLDLRADESAQLFEAAAPLFADSGFGATPIDAARWRLTLPA FT GMAPQTASPAAVAGQRLRAWWTQDVAMRPWRRLLNEIQMVWYEHPVNEARAARGAAPIN FT ALWLYGGATPWPAGAPAPARVCDELAATQRAGDWAAWLDALAMLDAAQLAPLAGPHGRP FT VQPLQLLLLGDDRRAALTLKPRAGLARWLPAPKHNWNAWWSRPV" FT misc_feature complement(1157469..1157543) FT /note="Signal peptide predicted for BP1106 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.712 between residues 25 and 26" FT CDS 1157601..1158833 FT /transl_table=11 FT /gene="lolC" FT /gene_synonym="lolE" FT /locus_tag="BP1107" FT /product="lipoprotein releasing system transmembrane FT protein" FT /note="Similar to Escherichia coli lipoprotein releasing FT system transmembrane protein LolE or B1118 SW:LOLE_ECOLI FT (P75958) (413 aa) fasta scores: E(): 1.4e-42, 36.27% id in FT 408 aa, and to Escherichia coli lipoprotein releasing FT system transmembrane protein LolC or B1116 or Z1757 or FT Ecs1494 SW:LOLC_ECOLI (P75956) (399 aa) fasta scores: E(): FT 2.7e-22, 34.86% id in 413 aa" FT /protein_id="CAE41405.1" FT /translation="MARIRQRRGCRDRFISFIAATSMAGIALGVAALIVVLSVMNGFQK FT EVRDRMLSVLPHIELYIPGAAPERVLQQWRQFAQAARANPEVKGEAPFVAAQGMLVRGQ FT ALRGVQVRGIDPATEGNVSDIPRQMVSGKLSDLVAGGFGAVLGSDLADGLGVKTGDTVL FT MLAPQGSISPAGFAPRMRQFTVVGIFSSGHYEYDSTLVFIDDEDAAKVFRESGTAGVRL FT RVADMQRAPEVAAELTKVLPPYVMAADWSRNNRTWFAAVQTEKRMMFLILALIVAVAAF FT NLLSSLVMAVKDKQSDIAILRTLGAGPGEVARIFLVQGALIGVVGTLLGVAGGIAIAYN FT VDVIVPFIERLLGVQFLPREVYFISALPSDPQADDIITIGLTSLVLSLLATLYPSWRAS FT RLQPAQVLRHD" FT misc_feature 1157601..1157687 FT /note="Signal peptide predicted for BP1107 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.988) with cleavage site FT probability 0.512 between residues 29 and 30" FT misc_feature join(1157637..1157705,1158405..1158473,1158543..1158611, FT 1158726..1158794) FT /note="4 probable transmembrane helices predicted for FT BP1107 by TMHMM2.0 at aa 13-35, 269-291, 315-337 and FT 376-398" FT misc_feature 1158075..1158821 FT /note="HMMPfam hit to PF02687, Predicted permease" FT CDS 1158826..1159521 FT /transl_table=11 FT /gene="lolD" FT /locus_tag="BP1108" FT /product="lipoprotein releasing system ATP-binding protein" FT /note="Similar to Escherichia coli lipoprotein releasing FT system ATP-binding protein LolD or B1117 SW:LOLD_ECOLI FT (P75957) (233 aa) fasta scores: E(): 1e-39, 57.79% id in FT 218 aa, and to Pseudomonas aeruginosa probable ATP-binding FT component of ABC transporter Pa2987 TR:Q9HZL7 FT (EMBL:AE004724) (227 aa) fasta scores: E(): 1.1e-38, 57.14% FT id in 224 aa" FT /protein_id="CAE41406.1" FT /translation="MTEPNDTGPALQAEHLGKVYDEGPARIEVLSDVSLSVARGEMVAI FT VGASGSGKSTLLHILGLLDVPSSGTVSVDGVPAAGLSEKRKSALRNRSLGFVYQFHHLL FT PEFSALDNVAMPLIVRRENRDRARAQAREVLELVGLAAREEHFPGQLSGGERQRVALAR FT ALVTRPACVLADEPTGNLDRHTAHNMFELLTRVNRESGTAFVIVTHDPELAARADRQLH FT MENGRLQPD" FT misc_feature 1158943..1159503 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 1158964..1158987 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1159276..1159320 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 1159555..1160382 FT /transl_table=11 FT /locus_tag="BP1109" FT /product="putative deoxyribonuclease" FT /EC_number="3.1.21.-" FT /note="Similar to Escherichia coli putative FT deoxyribonuclease YjjV or B4378 SW:YJJV_ECOLI (P39408) (259 FT aa) fasta scores: E(): 7.3e-29, 42.06% id in 252 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa3564 FT TR:Q9HY53 (EMBL:AE004777) (225 aa) fasta scores: E(): FT 1.2e-25, 40.62% id in 224 aa" FT /protein_id="CAE41407.1" FT /translation="MLIDTHCHLDAAEFDADRMAVARAAREAGVQAIVIPAVERANFAT FT VRQLAHAVDSGAYALGIHPLYVARARDEDLDSLRRAIESALPDPRFVAIGEIGLDFFVA FT EIASGAPRERQERFYAAQLDLAAEYGLPVLLHVRRSQDILLKHLRRRPGVPGGIAHAFN FT GSAQQAGAFVEQGFALGLGGAMTYPRALQIRRHAADIGLDHLVLETDAPDIPPAWLYEP FT ERRNTPGQLPRIAAELAALRGQAVADVARATTTTALRVLPRLGALLQDRAATP" FT misc_feature 1159558..1159584 FT /note="ScanRegExp hit to PS01137, TatD deoxyribonuclease FT family signature 1. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature 1159573..1160340 FT /note="HMMPfam hit to PF01026, TatD related DNase" FT CDS 1160664..1163894 FT /transl_table=11 FT /gene="sphB3" FT /locus_tag="BP1110" FT /product="serine protease" FT /note="Similar to Pseudomonas tolaasii serine protease EprS FT TR:O87811 (EMBL:AJ007828) (985 aa) fasta scores: E(): FT 1.1e-18, 25% id in 1060 aa, and to Serratia marcescens FT Ssp-h1 TR:Q54483 (EMBL:D78380) (1036 aa) fasta scores: E(): FT 9.3e-26, 27.08% id in 1067 aa" FT /protein_id="CAE41408.1" FT /translation="MAQASARGMGLRITSLAAALLGVYGAAGAAENRLECIGACPPGQP FT VAGAHYSGTNLSANREWVVYGEGSNAVFTLQGGSVTASGGLMGAVNAADGARVYLNQVS FT VRTDAGNGWEAPGVRAEYGALVNVRGGSIATVGGGSYGVQSLDSGTMIELNGTDIRTTD FT AYSDGLRAEFGGSIRAVGLTINTTGEHAVGAMGADDGTIALRDSRITTSGVDAYGLGTE FT SQVLSPGGVLQVSNTAIQTSGKNAHGVYLQGGSSLNMSGGSIRTTGSGAAGLRVSNGSS FT VALNGVEVVASGPSLLSTLSATRQQSIVVGAGSNLTRNDGRLLLVRRVAGGELGQVTLT FT LKSGSYAAGNIENLAADGSRESSALTIVDVQSGAQWAGLVIDDTTAIVNGSQSGQHSGF FT STAGDMVLEGGSAPVTFTGVSNIGGSSSLGAGSQTTFGGATTIGQSLAVLPGGSVAFNG FT PLTIGESVTEGQGTALSFNAPAIIGANVQGAGGAAFTFSGPAQVGGSVQGLDGASFRFS FT TSAPTAIAGGLSLAGGSSLGGGSPTTPIVVIGGADAVSGAILGGNLDIGGALRMTGASL FT APGNSIGTVTVGSVGALSGSTYLAEVNAKGQSDLLVVRSGNVDLAGVSLVVGQENGTGG FT YVLNHDYTIIKTEAGKIVGEFAAASLDESLASTLVKLDPVKYGAQATQVSLSPDADKLA FT AARAGLIRNQSAVLDGALSVAGRNASADAVMLMSDTGQRADALDQLSGEVHGSAVSALY FT SNTQLLNRTVARRMSANLGAGLLAGAPTAQAAGPAAASAMPGTAAYPLWADVVDNWSSF FT DAKDNAAKAKSNTAGLFIGGDAAVGAGWRVGGALGFTDGRIKADAVDSRSDVTSYTAAL FT YGGNSWAAGKGKLNFLAGVGYTHHDIDSRRSVDVGGAQTLKADYKANTTQLFAELGYQV FT PVGASSSVEPYAGLAWFNNHSDSFDEDGGPAALHGSGQTDQITTFTLGLRGNTALQLGA FT TETRLSAGLGWRHANGDVDATRKLAFIQGGGTAFTVAGSPVAREAAVLDLAAEVDVGRN FT AALGLAYGGQFGNGNKENTGSLYLKVRF" FT misc_feature 1160664..1160750 FT /note="Signal peptide predicted for BP1110 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.977) with cleavage site FT probability 0.936 between residues 29 and 30" FT misc_feature 1161225..1161257 FT /note="ScanRegExp hit to PS00639, Eukaryotic thiol FT (cysteine) proteases histidine active site." FT repeat_region 1163885..1164167 FT /note="to be defined- Nick" FT CDS 1164163..1164339 FT /transl_table=11 FT /locus_tag="BP1111" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE41409.1" FT /translation="MGAFCLFEECVAGIASRHPQWADVALPGDIQAEVLPRAPLPVHGA FT PAARYPGLFDVPD" FT CDS 1164630..1168556 FT /transl_table=11 FT /gene="bipA" FT /locus_tag="BP1112" FT /product="putative outer membrane ligand binding protein" FT /note="Similar to Bordetella bronchiseptica putative outer FT membrane ligand binding protein BipA TR:Q9APE8 FT (EMBL:AF304006) (1578 aa) fasta scores: E(): 0, 79.75% id FT in 1576 aa, and to Escherichia coli O157:H7 EDL933 putative FT adhesin EaeH TR:AAG54632 (EMBL:AE005207) (1417 aa) fasta FT scores: E(): 1.6e-17, 23.88% id in 1390 aa. Also similar to FT BP3204, 41.856% identity (43.284% ungapped) in 970 aa FT overlap." FT /protein_id="CAE41410.1" FT /translation="MNKNIYRVVWSLVRGAWVVAGEWARAGRKSSSPRRQNRQRARRGV FT AAMVGGSILAQALLPLSALAQGAPTLRPARVAQEEAGQDAAWTRKLAAQAESLARRQAE FT RQPGARVDGDYLKREAQAQVNDVLRDGVNLARESGLPFLRNLQGGLSHDFESGRTSLQL FT NTIDEVYRAGRNTGLLQLGAHNQNDRPTANAGAVYRREVNDALMVGANGFLDYEFGKQH FT LRGSVGLEVIAPEFSLYGNVYAPLSDWKGAKRNNRREEKPASGMDVGVGYRPAFAPGLS FT LSATHFRWNGAEVDYFDNGRTQAGAKGFKVGVEYRPVSLVSVGLEQTKVIGGGRETRMQ FT LGLNINLSEPLSKQLRRDASGTPAFSPDARRHALVERENRIVLNTRRKEIILPLVVSKV FT STLQADGRVTVIGATQPFATVTVRMPDGMTGTATADASGRFAYTSAGDQPSGVLALRAR FT NAEGDSSREVTYRYVDEVVLGDLQVAVMALVPLPADRALEVRGKTEPKVDVKVSFSNGE FT SVLAKADAKGLFTVRSTRKVTQGKVLVQATHPQTRKEARAVADYLPPATLAPTIDAVTA FT QADTGRVTVTGQAEPGAQVDVHFPDGTAKTVDAGADGAYAATSDGDMVSGDIHAQATDK FT AGNQSPEATRHYGDTTDITPPAAPTIANVATDATSGRVTAAGMAEPGANVTVNFPDGTR FT KTVVAGGDGAYTATSDRDMVSGDIRVQATDKAGNQSPEATRAYADAVDRTAPEVPTVTH FT VATDAKSGRITVTGMAEPGANVTVNFPDGTRKTAVAGGDGAYTATSDGDMVSGDIRVQA FT TDKAGNRSPEATRAYADTVDTTPPAVPTITDVTTDATNGRITVTGVAEPGANVTVDFPD FT GTRKTVVAGGDGAYTATSDRDMASGDVRVQAIDKGGNRSPEATRAYADTVDKTAPAAPT FT ITNVTTDAASGRITVTGMAEPGANVAVNFPDGTRKTVVADGAGAYAADSDGDMVAGDIH FT VQATDKAGNRSPEGTRAYVDTVDKTPSAAPTIVRVTTDRSSGVVTVAGTADPDNDVTVQ FT FPDGGRKTVKAGKDGSYSVTSDNDIFSGIIQVSARNPAGNASPEVRQDYRDEFVPANAI FT TNIETNSRNGIVTVSGKTSPDATVVVSFPGGDEARTRAKGDGTFSVSSPMDIPRGVVSL FT STEVNGVQTVVATRTYEDKFTKGGLDFTAFLPYTPKFNGVSTSDTSAVLLSIPRYFYSG FT GAPVAKIMPPEADGSEFAKRAAAAMRAQVTPGRDSSEYDVRVSWPAGTFTPADVGQRAD FT LAVKVFDKGTGKYMLLLAPVNFPY" FT misc_feature 1164759..1164827 FT /note="1 probable transmembrane helix predicted for BP1112 FT by TMHMM2.0 at aa 44-66" FT misc_feature 1166115..1166138 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1167675..1167725 FT /note="ScanRegExp hit to PS00237, G-protein coupled FT receptors family 1 signature." FT CDS join(1168738..1170357,1171407..1172252) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1113" FT /product="putative competence protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Pseudomonas stutzeri FT competence protein ComA TR:Q9XAU3 (EMBL:AJ243354) (741 aa) FT fasta scores: E(): 4.6e-20, 34.52% id in 814 aa, and to FT Acinetobacter spBD413. competence factor ComA TR:Q9EYM1 FT (EMBL:AF320001) (792 aa) fasta scores: E(): 3.4e-25, 25.21% FT id in 833 aa" FT /db_xref="PSEUDO:CAE41411.1" FT misc_feature join(1168738..1168782,1168810..1168878,1169392..1169460, FT 1169503..1169571,1169629..1169697,1169812..1169880, FT 1169917..1169985,1170028..1170096,1170115..1170183, FT 1170211..1170267) FT /note="10 probable transmembrane helices predicted for FT BP1113 by TMHMM2.0 at aa 20-42, 52-74, 246-268, 283-305, FT 325-347, 386-408, 421-443, 458-480, 487-509 and 519-537" FT repeat_region 1170354..1170385 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1170354..1171405 FT CDS 1170456..1171406 FT /pseudo FT /transl_table=11 FT /locus_tag="BP1114" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. Transposase for IS481 element. The FT transposase lacks a stop codon, hence it is fused to the FT C-terminal portion of the disrupted CDS" FT misc_feature 1170837..1171370 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1171375..1171405) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT misc_feature 1171422..1172033 FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily" FT CDS 1172294..1173220 FT /transl_table=11 FT /locus_tag="BP1115" FT /product="probable hydrolase" FT /note="Similar to Acidovorax spSA1 D-(-)-3-hydroxybutyrate FT oligomer hydrolase TR:Q9F1T8 (EMBL:AB044565) (291 aa) fasta FT scores: E(): 2.2e-10, 35.92% id in 309 aa, and to FT Rickettsia prowazekii hypothetical 33.7 kDa protein Rp444 FT TR:Q9ZD98 (EMBL:AJ235271) (293 aa) fasta scores: E(): FT 3.4e-10, 28.42% id in 292 aa" FT /protein_id="CAE41413.1" FT /translation="MQEPRLDFVTCASPTGFHRMAYWEWGDPLNDRVLVCVHGLTRTGR FT DFDHLARRLAGQWRVVCPDVAGRGKSDWLSNPALYAVPQYVSDMATLIARVWPATLAWV FT GTSMGGLIGLGLAGAATMMRLARAMRPRPDGLPAQADDLRLHRLVLNDVGPRLNVEVLQ FT RIAGNVAAQDSYSTFEAAVAAMRQISTTFGPHTDAQWDELARHIYVRQGGGWVRHFDPA FT LAVPLGAQVAQAFEAGERILWQAYDSLDCPVLIVRGQDSDLLSAATAGEMLARNPRARL FT HEVPGVGHAPTLMTPEQIEPIARFLQE" FT misc_feature 1172465..1173211 FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT misc_feature 1172594..1172662 FT /note="1 probable transmembrane helix predicted for BP1115 FT by TMHMM2.0 at aa 115-137" FT CDS 1173290..1174135 FT /transl_table=11 FT /locus_tag="BP1116" FT /product="conserved hypothetical protein" FT /note="Similar to Salmonella typhimurium protein TrpH FT SW:TRPH_SALTY (O54453) (289 aa) fasta scores: E(): 1.8e-32, FT 39.78% id in 274 aa, and to Neisseria meningitidis FT hypothetical protein Nmb1824 TR:Q9JXZ5 (EMBL:AE002531) (278 FT aa) fasta scores: E(): 3e-45, 50.18% id in 271 aa" FT /protein_id="CAE41414.1" FT /translation="MNIAAPNVDLHCHSTVSDGSMPPAAVARRAHANGVDVWALTDHDE FT IGGVAEAAQAAAALGMRFVAGVEISVTWAGLTVHIVGLRVDPANEALVQGLRDTRAGRA FT ARAVQIGERLAGLGMPGAYEGALPFAGNPELISRTHFARFLVEAGYCPDVQTVFNKYLG FT DDCPGHVPMQWASLAEAVGWIRGAGGCAVIAHPGRYKYSPMQFDALYDEFLQLGGTGIE FT VVTGSHTSEEARRYAEVARRHGFLASRGSDFHSPTESRVDLGRLPPLPPDLKPVWHDWF FT " FT misc_feature 1173311..1173502 FT /note="HMMPfam hit to PF02231, PHP domain N-terminal FT region" FT CDS 1174203..1174757 FT /transl_table=11 FT /gene="greB" FT /locus_tag="BP1117" FT /product="transcription elongation factor" FT /note="Similar to Escherichia coli transcription elongation FT factor GreB or B3406 SW:GREB_ECOLI (P30128) (158 aa) fasta FT scores: E(): 3e-19, 46.35% id in 151 aa, and to Neisseria FT meningitidis transcription elongation factor GreB or FT Nmb0689 TR:Q9K0C5 (EMBL:AE002423) (163 aa) fasta scores: FT E(): 4.4e-36, 63.87% id in 155 aa. Also similar to BP2267, FT 40.789% identity (41.060% ungapped) in 152 aa overlap." FT /protein_id="CAE41415.1" FT /translation="MNKAFVKESDRDDEDDLPEAQALPAGTRNYMTPQGYARLRDELSH FT LMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFLTKRLDIAEVVDPAA FT QPNRDQVFFGATVLYMDRAGEERTVTIVGVDEAEPLAGKISWISPVARALTKAHEGDTV FT TLRTPGGVEELEILEVRYPDA" FT misc_feature 1174278..1174748 FT /note="HMMPfam hit to PF01272, Prokaryotic transcription FT elongation factor, GreA/GreB" FT misc_feature 1174326..1174421 FT /note="ScanRegExp hit to PS00829, Prokaryotic transcription FT elongation factors signature 1." FT CDS complement(1174804..1175754) FT /transl_table=11 FT /locus_tag="BP1118" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41416.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLAGLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 1174804..1174835 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1174804..1175856) FT misc_feature complement(1174840..1175373) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1175431..1175496) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1175825..1175856) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1175853..1176485) FT /transl_table=11 FT /gene="fim2" FT /locus_tag="BP1119" FT /product="serotype 2 fimbrial subunit precursor" FT /note="Previously sequenced as Bordetella pertussis FT serotype 2 fimbrial subunit precursor Fim2 SW:FM2_BORPE FT (P05788) (207 aa) fasta scores: E(): 1.6e-76, 100% id in FT 207 aa, and highly similar to Bordetella bronchiseptica FT fimbrial subunit precursor Fim2 TR:Q44885 (EMBL:X74119) FT (208 aa) fasta scores: E(): 1.9e-55, 71.63% id in 208 aa, FT and to Bordetella bronchiseptica fimbrial subunit protein FT FimN TR:Q9F8W4 (EMBL:AF231910) (209 aa) fasta scores: E(): FT 2e-42, 62.43% id in 205 aa. Also similar to BP2674 (57.619% FT identity in 210 aa overlap), and to BP1568 (56.338% FT identity in 213 aa overlap)" FT /protein_id="CAE41417.1" FT /translation="MLPMQIPFQRALRLCLRAALAAIASAAHADDGTIVITGTITDTTC FT VIEDPSGPNHTKVVQLPKISKNALKANGDQAGRTPFIIKLKDCPSSLGNGVKAYFEPGP FT TTDYSTGDLRAYKMVYATNPQTQLSNITAATEAQGVQVRISNLNDSKITMGANEATQQA FT AGFDPEVQTGGTSRTVTMRYLASYVKKNGDVEASAITTYVGFSVVYP" FT misc_feature complement(1175856..1176392) FT /note="HMMPfam hit to PF00419, Fimbrial protein" FT misc_feature complement(1176399..1176485) FT /note="Signal peptide predicted for BP1119 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 29 and 30" FT CDS complement(1176656..1178938) FT /transl_table=11 FT /gene="maeB" FT /locus_tag="BP1120" FT /product="NADP-dependent malic enzyme" FT /EC_number="1.1.1.40" FT /note="Similar to Escherichia coli NADP-dependent malic FT enzyme MaeB or B2463 SW:MAO2_ECOLI (P76558) (759 aa) fasta FT scores: E(): 8.6e-184, 62.13% id in 758 aa, and to FT Pasteurella multocida Mdh Mdh_1 or pm0002 TR:Q9CPN5 FT (EMBL:AE006034) (758 aa) fasta scores: E(): 5.8e-179, FT 62.48% id in 757 aa" FT /protein_id="CAE41418.1" FT /translation="MDENLTKLALDYHAYPTPGKISVTPTKTLANQDDLSLAYSPGVAA FT ACMAIFDQGNDAASKYTSRSNLVGVITNGTAVLGLGNIGSLAAKPVMEGKGCLFKKFAG FT IDVFDIELAENDPDKLVDIIAALEPTLGGVNLEDIKAPECFYIEKKLRERMNIPVFHDD FT QHGTAIISSAAILNGLKVVGKDIGQVKLACSGAGAAAIACLDLLVHLGIKREHIYVVDS FT RGVIWEGRDENMEPNKRRYAQKTEARTLADVVNGADVFLGCSTAGVLTPEMVKTMAAQP FT LILALANPEPEIRPELAKAARPDCIVATGRSDYPNQVNNVLCFPFIFRGALDAGATRIT FT EEMKLACVKAIAELAQAEQNDEVARAYAGQELSFGPDYIIPKPFDPRLIVQIAPAVAQA FT AADSGVATRPIEDIEAYRQKLMGFVYHSGQLMRPLFQQAKQAPKRVVYADGEDERVLRA FT VQTVIDEKLAEPILVGRPSVIEMRIKKFGLRMVPGQNVEIVDPEDDSRFNDTWNGYYQL FT RGREGVTPAIAKAMIRKHNTLIGAMLLRRGDADALLCGVASKYDNQLKYVEEVIGRKPG FT QTYGALNVLMLPNQTLFVTDTHVNENPSADEIANITIQAAEEMLRFGVMPKIALLSHSN FT FGSRPTDSSRKMAHARKLVAERAPHLEVDGEMHADAALSESIRLQAYPDSTLKGRANLL FT VMPNLDTGNITYNMLKMTGSNGIAMGPILLGSARPVHILTTSATVRRIVNMTALAVVDA FT QQEAAEG" FT misc_feature complement(1176689..1177654) FT /note="HMMPfam hit to PF01515, Phosphate acetyl/butaryl FT transferase" FT misc_feature complement(1177877..1178011) FT /note="HMMPfam hit to PF00390, Malic enzyme" FT misc_feature complement(1178072..1178479) FT /note="HMMPfam hit to PF00390, Malic enzyme" FT CDS complement(1179093..1181789) FT /transl_table=11 FT /gene="aceE" FT /locus_tag="BP1121" FT /product="pyruvate dehydrogenase E1 component" FT /EC_number="1.2.4.1" FT /note="Similar to Escherichia coli pyruvate dehydrogenase FT E1 component AceE or B0114 or Z0124 or Ecs0118 FT SW:ODP1_ECOLI (P06958) (886 aa) fasta scores: E(): FT 2.9e-181, 53.94% id in 862 aa, and to Alcaligenes eutrophus FT pyruvate dehydrogenase E1 component PdhE TR:Q59107 FT (EMBL:X91878) (898 aa) fasta scores: E(): 0, 63.52% id in FT 869 aa. Also similar to BP1121, 54.711% identity (56.243% FT ungapped) in 881 aa overlap." FT /protein_id="CAE41419.1" FT /translation="MCNAQAGATPPQIPDPDPVETAEWCEALDSLTQAGGPERAAYVLQ FT QLLARATALGVRAPGITRTAYLNTIAADQEPPFPGNLSLEERIASINRWNALAMVVRAN FT QAHGELGGHIASYASAADLFEVGFNHFFRAPAPGFGGDLVYMQPHSAPGIYARAYLEGF FT LNDVDLAHFRQEITAGAQGLRGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRY FT LEHRSLAMPSDRKVWGIFGDGEMDEPESIAALTLAARERLDNLVFVINCNLQRLDGPVR FT GNGRIIDELETLYAGAGWNVIKLVWGGDWDALLRRDPDGVLAGTFSHTVDGQFQTFAAN FT DGAYNRQHFFGQDPRLSALVADWSDEAIDRLRRGGHDMVKIHAAYHRATHHRGQPTVIL FT AQTKKGFGMGTAGQGKMTTHQQKKLDDEALLAFRDRFALPISDADCLALKFYKPAEDSA FT ELRYLESRRAALGGYLPRRRTEAPRLAPPPVADWARFALQAAGKEMSSTMAIVRMLTAL FT LKDPQLGPRIVPIVADEARTFGMANLFRQVGIYSAQGQLYEPEDIGSVLAYREARDGQI FT LEEGITEAGAISSWTAAGTSYSVNGLPMLPFYIYYSMFGFQRIGDLIWAAADQRTRGFL FT IGATSGRTTLGGEGLQHQDGYSHLAAAAVPNCRAYDPAYAYEVAVLVEHGMQRMLDEQC FT DEFYYLTVTNENLAQPDMPEGEETRTGILRGMHRVRAADATPQVRLLGAGPMLDEAMRA FT AQLLRDEHGLDAEVWSVTSFSELARGGRGAERAQALGLPCPDGNWLAQCLGDQATPVVA FT VSDYVRAVPEQIRAWVPGPYRVLGTDGFGHSDTRARLRDFFEVGAPWIVLHALDLLARE FT DSAWQPALQARREQLQAATRNVPSWQS" FT CDS 1181915..1182403 FT /transl_table=11 FT /locus_tag="BP1122" FT /product="AsnC-family transcriptional regulator" FT /note="Similar to Escherichia coli leucine-responsive FT regulatory protein Lrp or AlsB or LivR or Ihb or OppI or FT B0889 SW:LRP_ECOLI (P19494) (163 aa) fasta scores: E(): FT 1.8e-21, 41.29% id in 155 aa, and to Pseudomonas putida bkd FT operon transcriptional regulator BkdR SW:BKDR_PSEPU FT (P42179) (161 aa) fasta scores: E(): 2.6e-32, 61.33% id in FT 150 aa" FT /protein_id="CAE41420.1" FT /translation="MPPHALDAIDRRILDLLQTDASLTNVELARRVHLSPSPCLARVKA FT LEAAGIIRGYVALADPAQLGLNLNVFIQVSLEKQVESELERFQGAMADCPEVMECYLMT FT GDADYLLRVVVADMPGLERFIVNRLSRIPGVKNIRSGFALKQVKYQTALPLRQGSGPQ" FT misc_feature 1182002..1182313 FT /note="HMMPfam hit to PF01037, AsnC family" FT CDS 1182439..1184487 FT /transl_table=11 FT /locus_tag="BP1123" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3934 TR:Q9HX82 (EMBL:AE004811) (678 aa) fasta FT scores: E(): 1.7e-151, 66.22% id in 678 aa, and to FT Neisseria meningitidis putative integral membrane protein FT Nma0207 TR:Q9JWW6 (EMBL:AL162752) (672 aa) fasta scores: FT E(): 4e-127, 56.58% id in 668 aa" FT /protein_id="CAE41421.1" FT /translation="MADATRIPDSVTLPELTLRGVLLGALITVIFTASNVFLGLKVGLT FT FSSAIPAAVISMSVLRMFRDANILENNMVQTQASAAGTLSAIIFILPALVMMGHWQGFP FT FWQTLAICGAGGMLGVMFTIPLRHIMVVQSDLPYPEGVAAAEILRVGSAEAPDTAPGRR FT GASGMGDILAGGGVAALVSLATGGLRVLGDSFSWWGQLGASVFRLPMGFSLALLGAGYL FT IGIVAGVAMLVGLLIAWLVAVPVLTATTPMPDGQSISAFANSLWASQVRFIGAGVIGVG FT AIWTLATLFMPMVRGVRTSFAAFGRSGEAAYGSAPRTERDLPSRWISLITLALVAVLVG FT VFAAFLQPAVLSPGARWGLVAYAVVFAFVFGFLVAAACGYMAGLIGSSTSPISGVGIVA FT IVLVSLLMLAIQRGDGLLATPQGLQMGIALAIFTTSAVVAVASISNDNLQDLKTGWLVG FT ATPWRQQVALLIGCVVGAAVISPVLELLYNAYGFGDALPRPGMDPSQALAAPQATLMLA FT IAQGIFTHQLNWTMILIGMGVGVALIVIDQVLRRTCRVARLPVLAVGIGIYLPPSASAP FT IVVGAVLAWLLEGALRRRAAAAGQDYERYAEGPNRRGVLVASGLIVGESLVGVLLAAVI FT GATGDEAPLAVVGAGFGPTAEWLGFVVFAAVAVWIYRRVVRTRPEQA" FT misc_feature join(1182496..1182555,1182565..1182618,1182679..1182738, FT 1182748..1182816,1182949..1183002,1183045..1183113, FT 1183126..1183194,1183252..1183320,1183414..1183482, FT 1183525..1183593,1183612..1183668,1183711..1183770, FT 1183831..1183899,1183957..1184010,1184029..1184088, FT 1184131..1184199,1184278..1184346,1184374..1184442) FT /note="18 probable transmembrane helices predicted for FT BP1123 by TMHMM2.0 at aa 20-39, 43-60, 81-100, 104-126, FT 171-188, 203-225, 230-252, 272-294, 326-348, 363-385, FT 392-410, 425-444, 465-487, 507-524, 531-550, 565-587, FT 614-636 and 646-668" FT CDS 1184812..1187682 FT /transl_table=11 FT /gene="odhA" FT /gene_synonym="sucA" FT /locus_tag="BP1124" FT /product="2-oxoglutarate dehydrogenase E1 component" FT /EC_number="1.2.4.2" FT /note="Similar to Escherichia coli 2-oxoglutarate FT dehydrogenase E1 component SucA or B0726 or Z0880 or FT Ecs0751 SW:ODO1_ECOLI (P07015) (933 aa) fasta scores: E(): FT 3e-194, 53.87% id in 941 aa, and to Alcaligenes eutrophus FT oxoglutarate dehydrogenase OdhA SW:ODO1_ALCEU (Q59106) (950 FT aa) fasta scores: E(): 0, 73.52% id in 948 aa" FT /protein_id="CAE41422.1" FT /translation="MSTESESLSTSYLFGGNAPYVEELYESYLDNPGSVPDNWREYFDQ FT LQHSPATDGQEATRDQAHAPIVESFAQRARANAFVQRVAEPDLSVASKQVSVQSLIAAY FT RSLGSRWADLDPLKRQERPAIPELDPAFYGLTEADLDQVYSATNTYFTTASTMTLRDIL FT KALRDTYCRSVGAEFMHISDPAAKRWIQQRLESTFSAPVFSTEEKRHILQQLTESEGLE FT RFLHTKYVGQKRFSLEGGESFIASMDEVVNHAGESGVQEIVVGMAHRGRLNLLVNIMGK FT MPGDLFAEFEGKHAEGLTDGDVKYHNGFSSDLSTRGGPVHLSLAFNPSHLEIVNPVVEG FT SVRARQERRGDGEGKQVLPVLVHGDAAFAGQGVVMETLNLAQTRGYGTGGTLHIVINNQ FT IGFTTSDPRDSRSTLYCTDVVKMIEAPVFHVNGDDPEAVVFATRLALDYRMQFRHDVVL FT DIVCFRKLGHNEQDTPSLTQPLMYKRIGHHPGTRKLYADKLTTQGVLAEGDADQLVKDY FT RQLMEDGQRTIEPVLTDYKSKYAIDWSPFLGAKWTDQADTAVPLAELKRIGERITTVPE FT GFTVHPLVAKLLNDRRNMAKGEVNLDWGMGEHLAFATLVASGYAVRITGQDSGRGTFTH FT RHAVLHDQNRERWNDGFYVPLQNVSEGQAPFTVIDSVLSEEAVLAFEYGYSSAEPNTLT FT IWEAQFGDFVNGAQVVIDQFITAGEAKWGRQSGLTLMLPHGYEGQGPEHSSGRIERFLQ FT LCADHNIQVVQPTSAAQIFHLLRRQMIRPFRKPLVIFTPKSLLRNKDAGSPLTDLAGGS FT FRPVIGEVDESIKAASVKRVLACSGKVYYDLVNARRERGADHVAIVRVEQLYPFAHKAF FT ETELRKYPKATEVIWVQDEPQNQGPWFYVQHHLYENMADGQKLGYAGRAASASPAVGYL FT AKHQEQQKALIEQAFAAKYKGFMLTK" FT misc_feature 1185319..1185384 FT /note="Predicted helix-turn-helix motif with score 1108 FT (+2.96 SD) at aa 170-191, sequence YCRSVGAEFMHISDPAAKRWIQ" FT misc_feature 1185448..1186410 FT /note="HMMPfam hit to PF00676, Dehydrogenase E1 component" FT misc_feature 1187482..1187511 FT /note="ScanRegExp hit to PS00904, Protein FT prenyltransferases alpha subunit repeat signature." FT CDS 1187728..1188942 FT /transl_table=11 FT /gene="odhB" FT /gene_synonym="sucB" FT /locus_tag="BP1125" FT /product="dihydrolipoamide succinyltransferase component of FT 2-oxoglutarate dehydrogenase complex" FT /EC_number="2.3.1.61" FT /note="Similar to Escherichia coli dihydrolipoamide FT succinyltransferase component of 2-oxoglutarate FT dehydrogenase complex SucB or B0727 or Z0881 or Ecs0752 FT TR:AAG55051 (EMBL:J01619) (405 aa) fasta scores: E(): FT 2.3e-61, 53.54% id in 409 aa, and to Alcaligenes eutrophus FT dihydrolipoamide succinyltransferase component of FT 2-oxoglutarate dehydrogenase complex SucB or OdhB FT SW:ODO2_ALCEU (P52993) (416 aa) fasta scores: E(): 2.5e-63, FT 76.73% id in 417 aa" FT /protein_id="CAE41423.1" FT /translation="MAITDVLVPQLSESVSEATLLTWKKQAGAAVEADEILIEIETDKV FT VLEVPAPSSGVLSEIVMGDGSTVTSGEVIARIDTAAKAAAAPAAAAEAPAAAAAPAAAA FT PAAASSAASGVASPAAAKILAEKGVDAASVAGTGRDGRVTKGDALAAGNAPAAKAAAPV FT APPTLSLDGRPEQRVPMSRLRARIAERLLQSQAENAILTTFNEVNMQAVMDLRARYKDK FT FEKEHGVKLGFMSFFVKAAVAALKKYPVLNASVDGKDIIYHGYFDIGIAVGTPRGLVVP FT ILRNADQLTIAEIEKTIADFGKRAADGKLGIEEMTGGTFSISNGGVFGSMLSTPIINPP FT QAAILGIHATKERPVVENGQIVIRPINYLAMSYDHRIIDGREAVLGLVAMKEALEDPQR FT LLLDL" FT misc_feature 1187737..1187958 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme" FT misc_feature 1187809..1187898 FT /note="ScanRegExp hit to PS00189, 2-oxo acid dehydrogenases FT acyltransferase component lipoyl binding site. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 1188277..1188936 FT /note="HMMPfam hit to PF00198, 2-oxo acid dehydrogenases FT acyltransferase (catalytic domain)" FT CDS 1189172..1190599 FT /transl_table=11 FT /gene="odhL" FT /locus_tag="BP1126" FT /product="2-oxoglutarate dehydrogenase complex, E3 FT component" FT /EC_number="1.8.1.4" FT /note="Similar to Alcaligenes eutrophus dihydrolipoamide FT dehydrogenase OdhL SW:DLDH_ALCEU (P52992) (474 aa) fasta FT scores: E(): 4.8e-107, 60.29% id in 476 aa, and to FT Neisseria meningitidis putative dihydrolipoamide FT dehydrogenase e3 component lpda3 or nma1151 TR:Q9JUT1 FT (EMBL:AL162755) (477 aa) fasta scores: E(): 1.8e-109, FT 64.34% id in 474 aa" FT /protein_id="CAE41424.1" FT /translation="MSKQFDVVVIGAGPGGYIAAIRAAQLGMSVACIDAWQNGQGGPAP FT GGTCTNVGCIPSKALLQSSEHYEQANHHFAEHGIEVKGVSLKLDTLIGRKNTVVKQNND FT GILYLFKKNKVTYFHGKGAFAGQVDGGWSIKVTGTTDADLVAKHVIVATGSSARELPGL FT PFDEKNILSNDGALNIGAVPKKLGVIGAGVIGLEMGSVWRRLGAEVTILEAMPEFLAAA FT DQQVAKEALKSFAKQGLDIQTGVKIGEIKAAAKSITVPYVDAKGAEQKLVVDKLIVSIG FT RVPYTGGLNAEAVGLKLDERGFVAVDEDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAV FT AERIAGQHGHVNFATVPWVIYTSPEIAWVGKTEQQLKAEGREYKAGSFPFMANGRARAL FT GDTTGFAKVIADAKTDEVLGVHIIGPMASELISEAVTIMEFRGAAEDIARICHAHPTLS FT EAVKEAALAVDKRTLNF" FT misc_feature 1189190..1190140 FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase" FT CDS 1190655..1191788 FT /transl_table=11 FT /locus_tag="BP1127" FT /product="conserved hypothetical protein" FT /note="Similar to Alcaligenes eutrophus odhA, odhB, odhL, FT orf1 and orf5 genes TR:Q44029 (EMBL:X91877) (186 aa) fasta FT scores: E(): 5e-56, 77.83% id in 185 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa4438 pa4438 TR:Q9HVX7 FT (EMBL:AE004858) (364 aa) fasta scores: E(): 1e-64, 49.31% FT id in 363 aa" FT /protein_id="CAE41425.1" FT /translation="MCNPPLCFGFSGCDMNVREYYEHALAERGYQPDEAQLQAVERLQR FT YYDEWVRFKALRSNALKKLLNRLDVPRGVYLWGGVGRGKSFLMDAFYATVPVVRKTRLH FT FHEFMRGVHRELEEVKGTQDPLDEVARRLARRYRLICFDEFHVSDVADAMILYRLLLKL FT FEHGTSFVMTSNYEPSTLYPDGLHRDRILPAIALIQGRMDVLNVDAGIDYRRRSLEQVQ FT CYHTPLDAQARQALEHAFAQLSDTAPQDPVLHIEHREIRAQALAGSVVWFDFATLCGGP FT RSQNDYLELANRFHAVILSDVPRMGPRQASEARRFTWLIDVFYDHKVKLIMSAEVEPEQ FT LYTEGALANEFHRTVSRILEMQSREYLEAERRLAVTL" FT misc_feature 1190886..1190909 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1191801..1192559) FT /transl_table=11 FT /gene="fabG" FT /locus_tag="BP1128" FT /product="3-oxoacyl-[acyl-carrier protein] reductase" FT /EC_number="1.1.1.100" FT /note="Similar to Escherichia coli 3-oxoacyl-[acyl-carrier FT protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) FT (244 aa) fasta scores: E(): 6e-23, 38.73% id in 253 aa, and FT to Pseudomonas aeruginosa 3-oxoacyl-[acyl-carrier protein] FT reductase FabG or Pa2967 SW:FABG_PSEAE (O54438) (247 aa) FT fasta scores: E(): 5.2e-25, 40.07% id in 252 aa" FT /protein_id="CAE41426.1" FT /translation="MTAANRTALVTGAARGIDLAIATRLALDGHPVIMLDASPDVQASA FT RALAGRGLRAHGMRLDIADEQAVRDLPRRCGQWWENLAIVVNNAGISPKHEGRKRKVAD FT MPLDEWRRVLDVNLTGTFLVTQTCLPALIAAGWGRIIMITSQAARTRTPVPGAHYSATK FT SGMTGLARVLAGEVAEHGITVNCVAPGRIQSAMTAEVGGAVNASHSATVPLGRLGLPEE FT VAATVAFLASDGAGYTTGATIDVNGGSFML" FT misc_feature complement(1191825..1191917) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(1191975..1192544) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT CDS 1192647..1193549 FT /transl_table=11 FT /locus_tag="BP1129" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Frateuria spANA-18 regulator of cat2 gene FT cluster OrfR2 TR:Q9Z9Y2 (EMBL:AB009373) (295 aa) fasta FT scores: E(): 3.1e-30, 37.96% id in 295 aa, and to FT Deinococcus radiodurans transcriptional regulator, LysR FT family dr0615 TR:Q9RWQ1 (EMBL:AE001919) (317 aa) fasta FT scores: E(): 1.4e-31, 39.35% id in 310 aa" FT /protein_id="CAE41427.1" FT /translation="MELRHLRYFLMLAETLHFGRAASRLGIAQPPLSRQIRDLEEQVGA FT TLFYRGTRGVSLTDAGVAFAQRAAQIVAAADEAVFEAREAGQGRTGRIVIGFVHSLAYS FT LLPRVLPGFRQKHPGIAVSLREVTVADKESALLSGQIDTGIYRPTVRHPEIATLPIFEE FT GFVLALPSGHPLARKRRVSVHSLRDQPLILFRALRGDVGLHGTIAAFLRAHDVPVKACE FT EVGTIHAGMGLVLAGVGVCIIPETSRMVHIEGVVTRPFAEATTRVSSTVCWRHQDSSRS FT LDAWVRHVRELIRTGESAG" FT misc_feature 1192653..1193081 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 1192692..1192757 FT /note="Predicted helix-turn-helix motif with score 1295 FT (+3.60 SD) at aa 31-52, sequence LHFGRAASRLGIAQPPLSRQIR" FT misc_feature 1192695..1192787 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(1193546..1194496) FT /transl_table=11 FT /locus_tag="BP1130" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41428.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 1193546..1193577 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1193546..1194598) FT misc_feature complement(1193582..1194115) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1194173..1194238) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1194567..1194598) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1194626..1195609) FT /transl_table=11 FT /locus_tag="BP1131" FT /product="putattive exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 1.2e-52, 46.95% id in 328 aa, and to FT Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 FT (EMBL:AE008213) (329 aa) fasta scores: E(): 1.4e-49, 45.39% FT id in 315 aa" FT /protein_id="CAE41429.1" FT /translation="MTFITLRAQACLAALLALAGASGAMAAGYPAQPIRLIVPYAAGGT FT TDLIARLVGQHMGTKLGQPVIVENKAGAGGNIGTEQVSRATPDGYTLLLGTAGNMTVNQ FT AIYKDMAFDPNKDFQPISLIATLPNLMVVNKTVPAQTTKEFVAWAKENPKTVFFASSGV FT GSTTHLTGELFNMATGLHMEHVPYKGSGPALIDLVGGTGPVVMFDNMPSAIALVRDGSL FT RALAVTGPDRESSAKDIPTVKESGYPDFDVVTWFGLFAPAGTPADVVQKLNKTVQEVVH FT SPQVSKRLSELGATPKTNSPQEYATIMKDDTAKWAKVVKTANIVKP" FT misc_feature complement(1195508..1195573) FT /note="1 probable transmembrane helix predicted for BP1131 FT by TMHMM2.0 at aa 12-34" FT misc_feature complement(1195532..1195609) FT /note="Signal peptide predicted for BP1131 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 26 and 27" FT CDS complement(1195664..1196386) FT /transl_table=11 FT /locus_tag="BP1132" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Vibrio harveyi 3-oxoacyl-[acyl-carrier FT protein] reductase FabG SW:FABG_VIBHA (P55336) (244 aa) FT fasta scores: E(): 6.5e-16, 40.85% id in 235 aa, and to FT Pseudomonas aeruginosa probable short-chain dehydrogenase FT Pa4162 TR:Q9HWL9 (EMBL:AE004832) (238 aa) fasta scores: FT E(): 4.7e-32, 47.8% id in 228 aa" FT /protein_id="CAE41430.1" FT /translation="MTRAQGYTLITGATRGIGRAIADLLAARGEPVMGIARSGDAGFPG FT PLLQADLLDAAQRREVLREAASHGVLRLVNNAGFNQMQPLGEITDAATSAILELNIAVA FT IDAAQAVLPGMTEAGAGRIVNIASRSLLARPGGSVYSAAKAAMVGLTRSWALELATRGI FT TVNCVAPGPVATEMFQRNNPPELARSRALVEAIPVARLGTPEEIAHAVDYFLAPHAAYT FT TGQTLFVCGGASISQIKL" FT misc_feature complement(1195700..1195792) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(1195859..1196371) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature complement(1195922..1196008) FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT CDS complement(join(1196383..1196754,1197804..1197899, FT 1197899..1198168,1198168..1198266)) FT /pseudo FT /transl_table=11 FT /gene="tauD" FT /gene_synonym="ssiD" FT /locus_tag="BP1135" FT /product="alpha-ketoglutarate-dependent taurine dioxygenase FT (Pseudogene)" FT /EC_number="1.14.11.17" FT /note="Pseudogene. This CDS appears to have two frameshift FT mutations following codons 33 and 123 (the sequence has FT been checked and believed to be correct), and disrupted by FT the insertion of IS481 element following codon 155. Similar FT to Escherichia coli alpha-ketoglutarate-dependent taurine FT dioxygenase TauD or SsiD or B0368 SW:TAUD_ECOLI (P37610) FT (282 aa) fasta scores: E(): 1.2e-37, 38.9% id in 275 aa, FT and to Pseudomonas aeruginosa taurine dioxygenase TauD or FT Pa3935 TR:Q9HX81 (EMBL:AE004811) (277 aa) fasta scores: FT E(): 3.1e-35, 39.78% id in 279 aa. Also similar to BP3856" FT /db_xref="PSEUDO:CAE41431.1" FT repeat_region 1196753..1196783 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1196753..1197804 FT CDS 1196854..1197804 FT /transl_table=11 FT /locus_tag="BP1134" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41432.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR" FT misc_feature 1197112..1197177 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1197235..1197768 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1197773..1197804) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT variation complement(1197899..1197901) FT /note="13 bp deletion in pertussis, relative to FT parapertussis and bronchiseptica, following this codon" FT variation complement(1198169..1198170) FT /note="CC in pertussis; (A)CC in parapertussis and FT bronchiseptica" FT CDS 1198526..1199059 FT /transl_table=11 FT /gene="fecI" FT /locus_tag="BP1136" FT /product="ECF-family sigma factor" FT /note="Similar to Escherichia coli probable RNA polymerase FT sigma factor FecI or B4293 SW:FECI_ECOLI (P23484) (173 aa) FT fasta scores: E(): 1e-21, 43.82% id in 162 aa, and to FT Pseudomonas aeruginosa putative RNA polymerase sigma factor FT Pa3899 TR:Q9HXB4 (EMBL:AE004807) (169 aa) fasta scores: FT E(): 1.9e-31, 54.54% id in 165 aa. Also similar to BP0349, FT 46.875% identity in 160 aa overlap" FT /protein_id="CAE41433.1" FT /translation="MPASLITSPSARPAADTAAVEGLYRQHRSWLAGWLRRRLGCPHRA FT EDLTQDVFVRVIQGRKAVRMEQARALLATIAKGLVIDHQRRAALEHAYLEYLAAQPSGH FT APSPQQQAELLQALVELDRLLEGLPPHARAVFLMSQLEGLGYAEIAQRLRISLSSVQQY FT MLRAMSACYMAFHE" FT misc_feature 1198622..1198786 FT /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF FT subfamily)" FT misc_feature 1198955..1199020 FT /note="Predicted helix-turn-helix motif with score 1074 FT (+2.84 SD) at aa 144-165, sequence LGYAEIAQRLRISLSSVQQYML" FT CDS 1199052..1200014 FT /transl_table=11 FT /gene="fecR" FT /locus_tag="BP1137" FT /product="putative signal transduction protein" FT /note="Similar to Escherichia coli protein FecR or B4292 FT SW:FECR_ECOLI (P23485) (317 aa) fasta scores: E(): 5.3e-19, FT 32.17% id in 317 aa, and to Pseudomonas putida pupI and FT pupR genes PupR TR:Q52209 (EMBL:X77918) (324 aa) fasta FT scores: E(): 1.3e-28, 37.88% id in 322 aa" FT /protein_id="CAE41434.1" FT /translation="MSRPAAPDAVAQQAIAWWVRLQSGCAAAAEHEACRAWLARDKAHQ FT RAWDRVATLAAGIRRAPAAPALAILPDLASRGPSRRQALRLLAGLGVGAAAGAGAYSWA FT PWQRLVADASTGVGERRQIVPGPGVRLVLASDSAVRLRIDATRRAIALLRGEMLVDVHS FT GAAQPALQVDTGYGMALAEQARFGVCRAGGSARIGVYAGSVQVASAPHAPWHRGEAGES FT LRLDGAGVPRRGRVAADESAWEDGLLVVHGWRLDRLAAQLARYRLGVIRVDPAVAGLRL FT SGVFPLDDAERALAAVRQSLPIEIRRHTAYWLSVTPRAA" FT CDS 1200108..1202585 FT /transl_table=11 FT /gene="bfrH" FT /locus_tag="BP1138" FT /product="putative ferric siderophore receptor" FT /note="Similar to Escherichia coli ferrichrome-iron FT receptor precursor FhuA or TonA or B0150 SW:FHUA_ECOLI FT (P06971) (747 aa) fasta scores: E(): 4.9e-61, 38.21% id in FT 717 aa, and to Burkholderia cepacia ornibactin receptor FT precursor OrbA TR:Q9F480 (EMBL:AF013993) (755 aa) fasta FT scores: E(): 6.7e-72, 36.05% id in 746 aa" FT /protein_id="CAE41435.1" FT /translation="MFSRSQKHPSWRLSPCVLAAALCAVAVGSADTARAQAPAASAQHY FT EIAAGPLADALTRFARRAGVVLSFDPALVQGRSTAGLQGVYGVRDGFAALLAGSGLQAR FT AGGGNNWSLAALPRGGDAQTLAPVTVLGLEGALAPTVGYVASASLSGTKTDTPLIETPQ FT SISVVTRDQITEQGAQTLNQVLRYTAGVATETRGATATRLDQFSVRGFSAATYLDGMRV FT FGGRDALPQVDAYRLERVDVLKGPASVLYGQGGPGGVVNQVSKRPLDEPLREIEVQAGN FT FDFRRVNMDFSGPVDEDRRFLYRVTGAAYMSDGQVDHTRERRYFVSPSFTWRPSADTTL FT TVLTNFQRDPDMGSYGSISAMRTLLSAPDGRRLGPNHYDGDADFEKSDRRSYSLGYQLE FT HRFNDTFKASQNLRFQHAEGVYRSIYGASNNNYGYLDKDYRYSQRGLAISDVDVDAFTI FT DNNLQARFDTGALAHTVLVGFDYQRVQTDTLSGYGSAPPLDVFDPDYHMGIERPPFTSD FT QTQYNYQTGLYLQDQIRLDRLSLLLGGRYDWSRTHTGTDNLANGSHSSSALAAEAFTGR FT VGAIYNFDNGVAPYASYSESFEPQTGTGWNNTPFKPTEGKQYEVGVKYQPPGSATLLTL FT AAFDIRRKNLPTTDPDPTHMCGVSRCSIQAGEVRTRGIELEAKTEPLRGLSLIAAYSYL FT DNEYEKAYPNTTGLDLKGKKPVAVPAHQASAWARYQLQEGPLAGLGMGAGVRYIGSSYA FT NETNTLKVPSVTLVDMMLDYDLGRASPALKGMQVALNVSNLFDKEYIGSCLSDSWCWYG FT YQRSIKASLRYRW" FT misc_feature 1200108..1200194 FT /note="Signal peptide predicted for BP1138 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.360 between residues 29 and 30" FT misc_feature 1202244..1202582 FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT CDS 1202702..1203010 FT /transl_table=11 FT /locus_tag="BP1139" FT /product="putative iron uptake protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0800 TR:Q9I5D8 (EMBL:AE004515) (177 aa) fasta FT scores: E(): 1.4e-08, 44.82% id in 87 aa" FT /protein_id="CAE41436.1" FT /translation="MKAPAAGAHMLHYRFAVTSRALAAILGGYALSSAAAACLAVWLPM FT RRVDAVVAALMLSFVVYTCAVLWVFATRNAWRAWAGVLLPALALLMLYWLGKAAGGA" FT misc_feature 1202702..1202812 FT /note="Signal peptide predicted for BP1139 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.891) with cleavage site FT probability 0.480 between residues 37 and 38" FT misc_feature join(1202762..1202830,1202843..1202911,1202930..1202989) FT /note="3 probable transmembrane helices predicted for FT BP1139 by TMHMM2.0 at aa 21-43, 48-70 and 77-96" FT misc_feature 1202783..1202815 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS join(1203007..1204068,1204072..1204650) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1140" FT /product="putative iron uptake protein (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TGA stop FT codon. The sequence has been checked and believed to be FT correct.Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0801 TR:Q9I5D7 (EMBL:AE004515) (506 aa) fasta FT scores: E(): 5.9e-64, 40.73% id in 518 aa" FT /db_xref="PSEUDO:CAE41437.1" FT variation 1204069..1204071 FT /note="TGA stop in pertussis; TGG in parapertussis and FT bronchiseptica" FT CDS 1204655..1204981 FT /transl_table=11 FT /locus_tag="BP1141" FT /product="putative iron uptake protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0802 TR:Q9I5D6 (EMBL:AE004515) (107 aa) fasta FT scores: E(): 8.5e-05, 37.25% id in 102 aa" FT /protein_id="CAE41438.1" FT /translation="MLNATAFCLAYAGFAALSLGMDRHYEDVFDRALPRRRRLALRSLE FT WLGLALSLWASAGAWGWNYGTVEWIGILSLAGLLLIWLLTFWPRAALGAGGACALAAPV FT LALL" FT misc_feature 1204655..1204714 FT /note="Signal peptide predicted for BP1141 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.865) with cleavage site FT probability 0.479 between residues 20 and 21" FT misc_feature join(1204769..1204837,1204847..1204915) FT /note="2 probable transmembrane helices predicted for FT BP1141 by TMHMM2.0 at aa 39-61 and 65-87" FT repeat_region 1205028..1205059 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1205028..1206080 FT CDS 1205130..1206080 FT /transl_table=11 FT /locus_tag="BP1142" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41439.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 1205388..1205453 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1205511..1206044 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1206049..1206080) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 1206090..1207445 FT /transl_table=11 FT /gene="trpS" FT /locus_tag="BP1143" FT /product="tryptophanyl-tRNA synthetase" FT /EC_number="6.1.1.2" FT /note="Similar to Escherichia coli tryptophanyl-tRNA FT synthetase TrpS or B3384 SW:SYW_ECOLI (P00954) (334 aa) FT fasta scores: E(): 1e-25, 34.91% id in 338 aa, and to FT Pseudomonas aeruginosa tryptophanyl-tRNA synthetase TrpS or FT Pa4439 TR:Q9HVX6 (EMBL:AE004858) (448 aa) fasta scores: FT E(): 1e-110, 65.7% id in 449 aa" FT /protein_id="CAE41440.1" FT /translation="MNTRVLTGITTTGTPHLGNYAGAIRPAIQASTQPGVDAFFFLADY FT HALIKCDDPARVARSRLELAATWLAAGLDPERVTFYRQSDIPEITELCWLLTCVTPKGL FT MNRAHAYKASVDQNAAKGVEPDDGVTMGLFSYPVLMAADILLFNANQVPVGRDQVQHLE FT MARDIAQRFNHLYGREFFVLPEVVIAEEVATLPGLDGRKMSKSYNNTIPLFEGGAAGLR FT NATQRIVTDSRLPGEPKDAEASHLYMLYRAFSTQQESMAFRRQLEEGMGWGDAKQALYE FT RLERDLAPMRERYVELISNPGLIEDILQVGAAKARKLAQPLVRTLRDAVGLGVLQPAAA FT KAAQPARKAAKDARFVSFRDEDGSFRFRLLAADGEELLCSVPFANPKEAGALMRRLQDE FT APEQALRGHDDVSYAAWLDGKEVAYGPQAADAGARDALLAKAREALAQLAAA" FT misc_feature 1206102..1206788 FT /note="HMMPfam hit to PF00579, tRNA synthetases class I (W FT and Y)" FT CDS complement(1207526..1209901) FT /transl_table=11 FT /gene="tex" FT /locus_tag="BP1144" FT /product="transcription accessory protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis Tex protein SW:TEX_BORPE (Q45388) (791 aa) fasta FT scores: E(): 0, 99.36% id in 791 aa, and to Escherichia FT coli protein YhgF or B3407 SW:YHGF_ECOLI (P46837) (773 aa) FT fasta scores: E(): 5.2e-166, 61.35% id in 766 aa" FT /protein_id="CAE41441.1" FT /translation="MPETSATTNAAPGVDHARIIAQLATEIGARASQVASAVELLDDGA FT TVPFIARYRKEATGGLDDGALRTLEVRLGYLRELEERRGAILESITQQGKLTPELQQEI FT ATAETKQRLEDLYAPYKPKRRTRAQIAREAGLEPLADAILADPACDPAALAAQYLNPEA FT SINDAKAALDGARDILAERHAENADLLADIREHLWSTGLLYSKMVEGKETDGANFRDWF FT DFNEPLRTLPSHRILALMRGRQQGVLELRVGLEADLEAETPHPCVVRIASFLKLGNGLF FT ALDATPRARWLGEVCRWTWRVKLLTAFESELFGRLRESAEAEAIRVFAANLKDLLLAAP FT AGPKTVLGLDPGIRTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKTLAALAARHKV FT ELIAIGNGTASRESEKLVGDMMARFPDLALTRVVVSEAGASVYSASETAALEFPDLDVT FT LRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVNQRELARSLDAVVEDCVNAVGVDV FT NTASAALLARVSGLNTLLAKNIVAWRDENGAFPTRDMLRKVPRFGEKAFEQAAGFLRIP FT NGDNPLDASAVHPEAYPVVERIVARIKADVRHIIGQREALKGVSPSDFTDERFGLPTVR FT DIFAELEKPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQD FT GLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVARKRVALTMRLNDAAEPARRGNGA FT GAGAARGADRGARRPQADNGKGAPANSAMADAFAKLKR" FT misc_feature complement(1207685..1207906) FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT CDS 1210066..1212141 FT /transl_table=11 FT /locus_tag="BP1145" FT /product="probable ATP-dependent helicase" FT /note="Similar to Escherichia coli probable ATP-dependent FT helicase DinG or RarB or B0799 SW:DING_ECOLI (P27296) (716 FT aa) fasta scores: E(): 2.1e-27, 30.15% id in 703 aa, and to FT Escherichia coli probable ATP-dependent helicase YoaA or FT B1808 SW:YOAA_ECOLI (P76257) (636 aa) fasta scores: E(): FT 3.1e-41, 40.49% id in 684 aa" FT /protein_id="CAE41442.1" FT /translation="MLDLDISEFFADDGPLARAMPGYRPRQSQVELAQAIDSAIAARAT FT LVAEAGTGIGKTWAYLVPAFAQGGKVLISTGTRTLQDQLFARDLPKVRQALAAPVTAAL FT LKGRGNYVCHYHLDRLQGDDRALKSRAEIGQLRQIQVFAGISKTGDRAELAQVPEDADI FT WQRVTSTRENCLGQECPRIRDCFVVKARRQAQEADVVVVNHALFMADLVLREEGVTDLL FT PEVDTVIFDEAHQLPDTATRFLGSSVSTHQLLDFARTLEAAGLAYAREAAKWSDVGRQV FT ETAARELRLACAPLERLPGRKATFEAMPDPDEFDAALASLREVLDAAVRALSGVAEKHP FT DLAAAARAGAEISVRLSRWATPPRHAAQAAEHDEGWGRDDQGVAVAAPSEALLAEAAAA FT ANWSGPAVRWVEHGQHHVRLHAAPLSVAQAFSRYRKPGQAWILTSATLSVYGDFGHFTR FT QLGLEDARTGRWESPFDYPAQGLLFVPRDMPEPQSPRFVERFVENLLPLLEASPGGALV FT LCTTLRAVDKVAQLLTDAFADAGHDWPLLRQGEATRRDLLERFCKLEHPVLVGSASFWE FT GIDLPGDVLTLVAIDKLPFAPPDDPVIEARLRACRLRGGNPFAEYQLPEAAISLKQGAG FT RLIRTETDWGVLMVGDARLVEKPYGKRLWRGLPPFARTRDMNEALAFYARMGEAEP" FT misc_feature 1210213..1210236 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1212203..1213003) FT /transl_table=11 FT /gene="comL" FT /locus_tag="BP1146" FT /product="competence lipoprotein precursor" FT /note="Similar to Neisseria gonorrhoeae competence FT lipoprotein ComL precursor SW:COML_NEIGO (Q50985) (267 aa) FT fasta scores: E(): 2.2e-40, 45.17% id in 259 aa, and to FT Pseudomonas aeruginosa hypothetical lipoprotein Pa4545 FT precursor SW:Y9F5_PSEAE (P33641) (341 aa) fasta scores: FT E(): 1.7e-35, 41.47% id in 258 aa" FT /protein_id="CAE41443.1" FT /translation="MALRAAIALSTILIVAGCGSSSTKYDKTAGWSAEQLYADAKQEVA FT AGNWTDARERLTAIESRYPFGTYAQQALIELAYVNWKDGENEQALAAIDRFQQLYPNHP FT GTDYVLYLKGLVNFTPASAFMSNLTGQDPAERDPKGLRASYDAFNELVQRFPNSKYTPD FT AQKRMTWLVNAIAMNEVHVARYYYERGAYVAAANRAQTVITDFEGAPASEEALYIMVES FT YDKLGMTELKGDAERVLDQNYPNSKFKTQGLSADKSWWNPFSWR" FT misc_feature complement(1212932..1213003) FT /note="Signal peptide predicted for BP1146 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.753) with cleavage site FT probability 0.453 between residues 24 and 25" FT misc_feature complement(1212950..1212982) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1213105..1214067 FT /transl_table=11 FT /gene="rluD" FT /gene_synonym="sfhB" FT /locus_tag="BP1147" FT /product="ribosomal large subunit pseudouridine synthase D" FT /EC_number="4.2.1.70" FT /note="Similar to Escherichia coli ribosomal large subunit FT pseudouridine synthase D RluD or Sfhb or B2594 FT SW:RLUD_ECOLI (P33643) (326 aa) fasta scores: E(): 5.1e-40, FT 44.26% id in 314 aa, and to Neisseria meningitidis FT ribosomal large subunit pseudouridine synthase D Nmb0704 FT TR:Q9K0B0 (EMBL:AE002425) (374 aa) fasta scores: E(): FT 1.1e-45, 46.84% id in 333 aa" FT /protein_id="CAE41444.1" FT /translation="MSDTAASVDLLSDDEPLLLTVPPDTPADRLDKVLAGLLPGHSRSR FT LQGWIEAGYVLVNGAQAKVRQAVGPGDVLSVWEQPAPESRAFAPEPVAFDVVAESPDWI FT VVDKPAGLVTHPGAGNWSGTLLNGLLHRYPELARVARAGIVHRLDKDTSGLMVVARNER FT AQTHLVRQLQARTMGRQYIALAHGWLGAAGTVDRPIGRDARVPVRMSVERPIAPKPAVT FT HFDPRRRGCAEGGARVSEVLCRLETGRTHQIRVHLASLGHPLLADTLYGGKPLAGATRQ FT MLHARALHFDDPGGAGEVSFEAGVPADMSDVQEALAWNA" FT misc_feature 1213186..1213326 FT /note="HMMPfam hit to PF01479, S4 domain" FT misc_feature 1213408..1213881 FT /note="HMMPfam hit to PF00849, RNA pseudouridylate FT synthase" FT misc_feature 1213537..1213581 FT /note="ScanRegExp hit to PS01129, Rlu family of FT pseudouridine synthase signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 1214109..1214810 FT /transl_table=11 FT /locus_tag="BP1148" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4543 SW:Y9E3_PSEAE (P33663) (242 aa) fasta FT scores: E(): 9.1e-33, 49.78% id in 229 aa, and to FT Escherichia coli hypothetical protein YfiH or B2593 FT SW:YFIH_ECOLI (P33644) (243 aa) fasta scores: E(): 1.4e-31, FT 47.61% id in 231 aa" FT /protein_id="CAE41445.1" FT /translation="MNYFCTTRAGGAGVAPHDTLNLGLRAGDRPETVAENRRRVRAAVP FT AEPLWLRQVHGHEVVDADAGPPHEPAADASVTAAPGRVLAIMVADCLPVVIADQDGTVL FT GAAHAGWRGLAGGVLENTLRAMQAKVPDARGWRAWIGPGIGPAAFEVGADVLQAFAADG FT PEAAALFAPRPGLPGKWLADLPGLALLRLRRAGVQAQSCGLCTVQDSRFFSYRRDRETG FT RMALLAWLDAR" FT misc_feature 1214151..1214801 FT /note="HMMPfam hit to PF02578, Uncharacterized ACR, YfiH FT family COG1496" FT CDS 1214918..1216555 FT /transl_table=11 FT /gene="phbC" FT /locus_tag="BP1149" FT /product="poly-beta-hydroxybutyrate polymerase" FT /EC_number="2.3.1.-" FT /note="Similar to Alcaligenes eutrophus FT poly-beta-hydroxybutyrate polymerase PhbC SW:PHBC_ALCEU FT (P23608) (589 aa) fasta scores: E(): 8.2e-129, 58.96% id in FT 541 aa, and to Burkholderia SpDSMZ 9242. phac TR:Q9RB82 FT (EMBL:AF153086) (625 aa) fasta scores: E(): 1.6e-124, FT 55.78% id in 545 aa" FT /protein_id="CAE41446.1" FT /translation="MNAHLSAAWPVPVSVAPDALAEIQADFSREWLRLCDEAKRGVLGA FT PADKRFAGAAWLDDRQRLLMAHAYLLSARAMARLVEAAQVSEPMRNRLRFSVMQWVDAM FT SPANFLAFNPDAQRAIVESAGRTLQEGMANLLNDIQRGRISQTDETQFEIGRNVATTPG FT HVVFENSLMQLIQYAPQTAKVCERPLVIVPPNINKYYILDLQPENSFVRYAVEQGHTVF FT IISWRNPLAADTDGVDTATWSEYLDDAVLKALAVASDISGQPQVNALGFCVGGTMLASA FT LALAQVRGERPVASLTLLTSLLDFHDTGILKVFVDEAHALLRDHQYGQRGLMPARDLAT FT TFSFLRPNELVWNYVVSNYLKGKTPPAFDLLFWNADSTNLPGPFFAWYFRNTYLENNLK FT VPGRARVAGVPLDLTRLDMPTYLYGSREDHIVPWPSAYASTQLLRGPMRFVLGASGHIA FT GVINPPAKQRRSYWVNESAGAVSHDLPGDPNAWLAGAVEHAGSWWPDWTSWLAGHGGKQ FT VAAPAQAGNKRFRPIEPAPGRYVKVRAV" FT misc_feature 1215572..1216336 FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT misc_feature 1215608..1215634 FT /note="ScanRegExp hit to PS00116, DNA polymerase family B FT signature." FT CDS 1216623..1217360 FT /transl_table=11 FT /gene="phbB" FT /locus_tag="BP1150" FT /product="acetoacetyl-CoA reductase" FT /EC_number="1.1.1.36" FT /note="Similar to Alcaligenes eutrophus acetoacetyl-CoA FT reductase PhbB SW:PHBB_ALCEU (P14697) (246 aa) fasta FT scores: E(): 1.6e-71, 76.82% id in 246 aa, and to FT Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FT FabG or B1093 SW:FABG_ECOLI (P25716) (244 aa) fasta scores: FT E(): 2.5e-34, 45.67% id in 243 aa" FT /protein_id="CAE41447.1" FT /translation="MSGKLAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPSRNYQQWLD FT EQAAQGYTFYASVGNVSDWESTVKAFERVTADLGQVDVLVNNAGITRDGLFRKMSVDDW FT RAVIDTNLNSLFNVTKQVLDGMVERQWGRIVNISSVNGQKGQFGQTNYSTAKAGIHGFT FT MALAQEVASKGITVNTISPGYIGTDMVRAIRPDVLEKIVATIPVRRLGTPEEIASMTSW FT LASDESGFATGADFSLNGGLHMG" FT misc_feature 1216632..1217186 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 1217037..1217123 FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 1217244..1217336 FT /note="HMMPfam hit to PF00678," FT CDS 1217463..1218038 FT /transl_table=11 FT /locus_tag="BP1151" FT /product="conserved hypothetical protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 21.0 FT kDa protein TR:O68272 (EMBL:AF026544) (183 aa) fasta FT scores: E(): 2.8e-48, 73.48% id in 181 aa, and to FT Burkholderia spDSMZ 9242. hypothetical 21.8 kDa protein FT TR:Q9RB79 (EMBL:AF153086) (188 aa) fasta scores: E(): FT 2.1e-47, 71.5% id in 179 aa" FT /protein_id="CAE41448.1" FT /translation="MTQAQTGAALRLIKKYPNRRLYDTQTSTYITLADVKQLVLANENF FT QVVDAKSGEDLTRSILLQIILEEESGGMPMFSSNMLAQIIRFYGHAMQGIMGSYLEKNI FT QAFMEIQQRMAEQSKGLYGSQFGPEAWTQFMNVQTPMLQKMMNNYIDQSKNLFVQMQDQ FT MQDQTRAMFSNFPFTPPGGDGPQGGRGK" FT CDS 1218211..1218747 FT /transl_table=11 FT /locus_tag="BP1152" FT /product="putative exported protein" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm0452 TR:Q9CNH9 (EMBL:AE006081) (173 aa) fasta FT scores: E(): 3.9e-34, 55.74% id in 174 aa, and to FT Campylobacter jejuni periplasmic protein P19 or Cj1659 FT TR:Q9PM18 (EMBL:AL139079) (179 aa) fasta scores: E(): FT 1.2e-32, 51.09% id in 182 aa" FT /protein_id="CAE41449.1" FT /translation="MMKKALLLALALSLPGAAFAAEYPIGKPAEKGGMEIGAVYLQPIE FT MDPPGMMRAAKDSDVHLEADIHATAGNATGFPEGEWVPYLVVKYEVQKVGSDKVQKGTF FT MPMVANDGPHYGDNVKLDGPGKYKLKYTIMPPTADKMNHFGRHIDKETGVGPWFEPFDL FT EYEFVFAGTGKKGGY" FT misc_feature 1218211..1218270 FT /note="Signal peptide predicted for BP1152 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 20 and 21" FT CDS 1218750..1219094 FT /transl_table=11 FT /locus_tag="BP1153" FT /product="putative exported protein" FT /note="Similar to Prochlorothrix hollandica plastocyanin FT precursor PetE SW:PLAS_PROHO (P50057) (131 aa) fasta FT scores: E(): 2.7, 27.2% id in 125 aa, and to Rickettsia FT prowazekii hypothetical protein Rp394 SW:Y394_RICPR FT (Q9ZDD7) (125 aa) fasta scores: E(): 0.00021, 39.74% id in FT 78 aa" FT /protein_id="CAE41450.1" FT /translation="MRAPAAALLAMALGLGAPLAARAADLPTFTLTFQPDGTFEPARLE FT VPAGRFKIELINASNEPVEFESIPLRKEKVLGPGVKSFVVITISRPGEYPFFDDFHQDV FT KGTLVVKPKD" FT misc_feature 1218750..1218818 FT /note="Signal peptide predicted for BP1153 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 23 and 24" FT CDS 1219110..1219955 FT /transl_table=11 FT /locus_tag="BP1154" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb0034 TR:Q9K1P7 (EMBL:AE002362) (279 aa) fasta FT scores: E(): 2.1e-20, 31.59% id in 269 aa, and to FT Streptomyces coelicolor putative membrane protein Scc75a.23 FT TR:Q9RKQ1 (EMBL:AL133220) (290 aa) fasta scores: E(): FT 3.3e-18, 34.4% id in 250 aa" FT /protein_id="CAE41451.1" FT /translation="MEQVLFIVWRESVEALLVVGILYAWLRATPAGRRGMPYLWGGVAA FT GLALALLLALVLLGVSSWLSDEGQEWFQAGMSLVACALVVQMVIWMKRHGRTLKRELEG FT GARASIERDNWWGLLVLVMIAVAREGSETVVFLYGTVAAAAGQAGDAALLVLAGAAGFL FT IALLTFWLLQLGGKLITWRRFFRVTEILLLLLAGALLVGGLDHLISLDVLPTLIDPVWD FT SSWLLDDSSGMGKVLADFAGYRAYPALISVLLWLAYWLVVWLLLRRADGAAAISARSAA FT " FT misc_feature join(1219119..1219187,1219224..1219292,1219320..1219379, FT 1219452..1219520,1219563..1219631,1219668..1219736, FT 1219839..1219907) FT /note="7 probable transmembrane helices predicted for FT BP1154 by TMHMM2.0 at aa 4-26, 39-61, 71-90, 115-137, FT 152-174, 187-209 and 244-266" FT CDS 1219994..1221373 FT /transl_table=11 FT /locus_tag="BP1155" FT /product="putative regulatory protein" FT /note="Similar to Synechocystis sp nitrogen assimilation FT regulatory protein Slr1529 TR:P74210 (EMBL:D90913) (835 aa) FT fasta scores: E(): 1.5e-09, 26.03% id in 434 aa, and to FT Achromobacter cycloclastes regulatory protein NosR FT TR:O68476 (EMBL:AF047429) (731 aa) fasta scores: E(): 0.05, FT 24.9% id in 261 aa, and to Rhizobium meliloti regulatory FT protein NosR TR:O68483 (EMBL:AF047430) (755 aa) fasta FT scores: E(): 1.4, 24.9% id in 249 aa" FT /protein_id="CAE41452.1" FT /translation="MASVLGRATARFADVLRDHAPLLRKLQWGIVAAYAFLLIVPVFLP FT LPDNAASVFDNLTVLAQFAFWGVWWPFVLVSMPLLGRAWCGWFCPEGMLTEWASERGQG FT RAIPRWMRWGGWPFVAFALTTIYGQLVSVYQYPLAALAVLGGSTVAAMIVGWRYGRSKR FT VWCKYLCPVNGVFNLLAKLAPWHFKVDEEKWRHPVIRVEAINCAPLVPLRHMKGAGDCH FT VCGRCSGYRGAIALAPRSPETEIVEVADGDGWQTALICFGLMGVAVGAFLWSASPWYVT FT IKQWAAAWLVEHDIIWPLLDNAPWFVLTHYPDVNDSFSWLDGAGILLFVAGATLAVGLP FT AFAALWLADRVAPLAARAGRLAGVHKLAQGLIPCAGIGVFLGLSATTLTLLRHEGVGTG FT WANPVRFTLLALAVLWSLRLVWRLLARRPAGLARRGLAWLAAAAGLAPFCLSWVLFFAI FT W" FT misc_feature join(1220054..1220122,1220165..1220233,1220330..1220386, FT 1220399..1220467,1220765..1220833,1220969..1221037, FT 1221098..1221166,1221209..1221265,1221299..1221367) FT /note="9 probable transmembrane helices predicted for FT BP1155 by TMHMM2.0 at aa 21-43, 58-80, 113-131, 136-158, FT 258-280, 326-348, 369-391, 406-424 and 436-458" FT misc_feature 1221293..1221358 FT /note="Predicted helix-turn-helix motif with score 1057 FT (+2.79 SD) at aa 434-455, sequence RGLAWLAAAAGLAPFCLSWVLF" FT CDS 1221451..1222332 FT /transl_table=11 FT /locus_tag="BP1156" FT /product="conserved hypotheticals protein" FT /note="Similar to Pseudomonas aeruginosa FT phenazine/pyocyanine biosynthesis protein PhzF FT SW:PHZF_PSEAE (O69754) (278 aa) fasta scores: E(): 2.7e-08, FT 31.43% id in 299 aa, and to Erwinia chrysanthemi putative FT antibiotic biosynthesis protein Pab TR:CAC59746 FT (EMBL:AJ310612) (293 aa) fasta scores: E(): 1.5e-17, 36.42% FT id in 302 aa" FT /protein_id="CAE41453.1" FT /translation="MTSYAFRLLNVFAESCFGGNPLCVFEDARGLRDEEMQALALQFNL FT SETTFILPGGEGADAQVRVFTPDAEMRFAGHPALGTARVVSELLGLGASVRLGFKAGVV FT PVREHDGAWTFTAPSSGMPRTARAALAAGEIAGLLGLDPADLHDEPLWVDTGSDQLLVP FT LKTPEAVMRAAPHAAWPARWPANSLGRKTAYVFAFGPQTGAGARRIVQSRYFHARAGGG FT VAEDPGTGSACANLGGWLLARGAPLPAHILVEQGDLVRRPCRLRLDVDDAGAIQVGGGV FT IEIGRGEIRLPR" FT misc_feature 1221454..1222320 FT /note="HMMPfam hit to PF02567, Phenazine biosynthesis-like FT protein" FT repeat_region 1222329..1222360 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1222329..1223381 FT CDS 1222431..1223381 FT /transl_table=11 FT /locus_tag="BP1157" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41454.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT" FT misc_feature 1222689..1222754 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1222812..1223345 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1223354..1223381) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1223378..1223788) FT /transl_table=11 FT /locus_tag="BP1158" FT /product="putative dioxygenase" FT /note="Similar to Agrobacterium tumefaciens Agr_l_1189p FT TR:AAK89172 (EMBL:AE008257) (134 aa) fasta scores: E(): FT 1.3e-30, 65.89% id in 129 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa3956 TR:Q9HX60 (EMBL:AE004813) (144 FT aa) fasta scores: E(): 4.3e-15, 45.9% id in 122 aa" FT /protein_id="CAE41455.1" FT /translation="MFSHVTVGVSDLARAGRFYDALLQPLGLRQRQTQPDGGPPSLCWV FT RAGTSLPRFFAYMPFNGRPPSPGNGAMVAFLAETSEQVDQAHAAGLAAGGSDEGAPGPR FT ARYGPGYYGAYLRDPDGNKLHVVHRSGPAAAG" FT misc_feature complement(1223402..1223767) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS complement(1223896..1224750) FT /transl_table=11 FT /locus_tag="BP1159" FT /product="putative 2-pyrone-4,6-dicarboxylic acid FT hydrolase" FT /note="Similar to Pseudomonas paucimobilis FT 2-pyrone-4,6-dicarboxylic acid hydrolase LigI TR:O87170 FT (EMBL:AB015964) (293 aa) fasta scores: E(): 6.8e-17, 30.76% FT id in 273 aa, and to Sphingomonas spLB126 FldB protein FT TR:Q9L399 (EMBL:AJ277295) (295 aa) fasta scores: E(): FT 4.1e-19, 32.24% id in 276 aa" FT /protein_id="CAE41456.1" FT /translation="MVERARLAEGGGWDCHFHVFDASRYTLAAGSAYQPEDASLAAFRG FT VCRARGIGRAVLVHPSVYGADHSSYEDALAANGDWLRGVAVVYPDEATTPDARIEHWDL FT LGTAGTRINRLFPGAPQHPERIVERVKPFGWHVQVLTDIVEDIGLVRRIAARDVPVVVD FT HFGHHPHAQLLRSAGWQDLIALVREGAAWVKLSAPYRVGAQGPAWPGAQALVDQLVQAN FT PRQLVWGSDWPHPPDHRHPFPAPDQAAIGATIAQWLPDAQLRRQVMELNPLRLYGGTRA FT AGR" FT CDS complement(1224743..1225705) FT /transl_table=11 FT /locus_tag="BP1160" FT /product="putative lipoprotein" FT /note="Similar to Burkholderia cepacia hypothetical 35.5 FT kDa protein TR:AAK81675 (EMBL:AF029344) (337 aa) fasta FT scores: E(): 3.1e-31, 37.1% id in 318 aa, and to Variovorax FT paradoxus 2,4-diphenoxyacetic acid gene cluster TR:Q9RHQ7 FT (EMBL:AB028643) (337 aa) fasta scores: E(): 3.1e-31, 37.1% FT id in 318 aa" FT /protein_id="CAE41457.1" FT /translation="MMKLRAACALAAALACGAVLAQDLGGKPLTLVVPFAPGGNADIVA FT RSYAVPMARLIGATVVVDNRGGGGGAIGTAIVAKAPADGSTLLSATPGQLGTLPHMFKT FT GYKSADFVPVGVVSKTSIALVVKHDDARFKTTEEFIAYARRNPGKLNVGHAGPGSPNHL FT AMLQFENATGTRFTPIAYKGSGPALIDLLSGQIDVIFDQVSSSLPHLKAGKLSALLILG FT PTRDPSIGQVRTLKEAGLPEFDASTYIGVLAPKGVPAETVAKLTSVIRQVADDPAFDSK FT LREIGSGAFYADPADFARILQADEDLAKAMIQQGRLIDG" FT misc_feature complement(1225643..1225705) FT /note="Signal peptide predicted for BP1160 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 21 and 22" FT misc_feature complement(1225658..1225690) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(1225751..1226875) FT /transl_table=11 FT /locus_tag="BP1161" FT /product="putative racemase" FT /note="Similar to Rhizobium loti Mlr3365 protein TR:Q98GE6 FT (EMBL:AP003001) (389 aa) fasta scores: E(): 5.1e-26, 31.16% FT id in 385 aa, and to Streptomyces coelicolor putative FT isomerase Sce65.11C TR:Q9RKG2 (EMBL:AL133236) (377 aa) FT fasta scores: E(): 3.7e-24, 32.04% id in 362 aa" FT /protein_id="CAE41458.1" FT /translation="MAIIKSIEVCVARVPMDKVTYLSNRTVVDRHYGLVKVRSADGVEG FT IGFCYVGNQAGEIFRVAVEQLLGPVLIGRDSLAVEGLWREMYQEALLQGRMGMVMRALS FT ALDIALWDLNARAANLPLHKYLGAVELDSVAAYASGGYYVEGKTAGQLGEEMASYVELG FT FKAVKMKTGRWSPQGEESRVRAAREAIGEDVELMLDCNNGWVDTVQAMEYLRRMEPYNP FT YFIEEPFSPDDVESHARLARLTRIPVATAEIGYGRWYHKQLLDMGAAAILQTDAAVCGG FT ITEWKRIAAMAAGYGIQMCPHWFHDVHAPLAAATPNARYVEFFWDDQVLNFRRLVDRQL FT EHKDGRVILHQTPGLGFGFDENAVARYGRWTTVS" FT misc_feature complement(1225829..1226860) FT /note="HMMPfam hit to PF01188, Mandelate racemase / FT muconate lactonizing enzyme, C-terminal domain" FT misc_feature complement(1226432..1226455) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(1226618..1226659) FT /note="ScanRegExp hit to PS00213, Lipocalin signature." FT CDS 1226987..1227859 FT /transl_table=11 FT /locus_tag="BP1162" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to the previously sequenced Bordetella FT pertussis Brg1 TR:O30441 (EMBL:AF006000) (291 aa) fasta FT scores: E(): 3.4e-23, 34.02% id in 288 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT Pa0816 TR:Q9I5C3 (EMBL:AE004516) (294 aa) fasta scores: FT E(): 3e-23, 33.9% id in 289 aa" FT /protein_id="CAE41459.1" FT /translation="MRFLHSFVTVAESGSIADAARRLGLAPTTVAQQIRALEADLGSRL FT LTRAGRTVRPTVAGARIVDRARELLRGERDLRSAASDTGLPAGPMRLGATPTALMGLVP FT PLLRRWMRAHPDIQIYIEPGTSSVLLERVMAGQLDAAILVHPNFELHKTCAWSLIREER FT LVLLAPSALRVGNALRVAAREPFIQYDRKVVAGKMADEYLRAHGVRPKVQFELDGIEHI FT SALVAEGFGVSVLPDWPTLGPADARVRRWPLPDPCPSRQVGMVWLRSSVRSPLAQAFHA FT YLGAAAGAP" FT misc_feature 1226987..1227412 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 1227026..1227091 FT /note="Predicted helix-turn-helix motif with score 1838 FT (+5.45 SD) at aa 18-39, sequence GSIADAARRLGLAPTTVAQQIR" FT misc_feature 1227029..1227121 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS 1227984..1228763 FT /transl_table=11 FT /locus_tag="BP1163" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Picea abies short-chain type FT dehydrogenase/reductase SW:SDR1_PICAB (Q08632) (271 aa) FT fasta scores: E(): 1.4e-22, 38.37% id in 258 aa, and to FT Streptomyces coelicolor reductase Stah10.29 TR:Q9RKS8 FT (EMBL:AL132824) (262 aa) fasta scores: E(): 5e-40, 54.43% FT id in 248 aa" FT /protein_id="CAE41460.1" FT /translation="MNQVATQSSLAGRTALVTGASRGIGRAIALALGRRGATVAVHYNA FT AREQADEVVQAIGAAGGRAWALRADLAHPDGAGALARDLRASLREQTGDEGLDILVNNA FT GVSLRARLPEVSPQDFDRIIQVNLKTPFFLIQHLLPLLRDAGRIVNVSSMGTRAAYPEM FT SVYAPAKAGLEALTLLLASDLGARGITVNAVLPGATATDMNTRARDPAMADALARDIAL FT GRVGQPEDIADIVAFLASDQARWITGQRLDATGGQRL" FT misc_feature 1228020..1228589 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 1228650..1228742 FT /note="HMMPfam hit to PF00678," FT CDS 1228917..1230338 FT /transl_table=11 FT /locus_tag="BP1164" FT /product="putative membrane protein" FT /note="Similar to Zymomonas mobilis tetracenomycin C FT resistance and export protein YjcC TR:Q9X3X9 FT (EMBL:AF088896) (487 aa) fasta scores: E(): 6.8e-48, 45.64% FT id in 436 aa, and to Escherichia coli hypothetical FT transport protein YebQ or B1828 SW:YEBQ_ECOLI (P76269) (457 FT aa) fasta scores: E(): 6.9e-46, 45.59% id in 443 aa" FT /protein_id="CAE41461.1" FT /translation="MPPSRHLPPITALLSFRLNQLAQAGAGLPHPTRAIAVAAILINVF FT MATLESAIANTALPAIAADLGVSEASSIWVISAYHLAMVAALLPIASLGEIIGHRRISM FT AGLVLFTLASLACGLAPSLPWLIAGRLAQGVGAAGILGVALAMTRFVYPREQLGRGLGL FT NALVVSLSLAAGPTAASLILSLGSWHWLFLINVPLGLLGLALGVCALPPTPRSARRYDA FT VAGLLCALFLALLVYTLNAYAHDVGAGGNTAYALATLAMLALLLRRQSGRGAPMLATDL FT LRRPIFALSAAATLGAFAAQTLAFVALPFMLQSLLGYTQVQTGFLITPWPALSDRHPPG FT LLGGIGMAVLAAGLLSLVALPAAPDAFDLGWRMALCGAGFGFFQAPNMRAMLADAPPER FT SGGASGMTSSSIMLGQSLGAALVAGLFTLRGAAAAPAALWLGAAFAVIAGIASLLRLRH FT AAAAGAGARLDLTRV" FT misc_feature 1228917..1228988 FT /note="Signal peptide predicted for BP1164 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.798) with cleavage site FT probability 0.491 between residues 24 and 25" FT misc_feature join(1229031..1229099,1229142..1229210,1229229..1229297, FT 1229307..1229375,1229394..1229462,1229475..1229543, FT 1229580..1229648,1229661..1229714,1229772..1229840, FT 1229934..1230002,1230021..1230074,1230210..1230278) FT /note="12 probable transmembrane helices predicted for FT BP1164 by TMHMM2.0 at aa 39-61, 76-98, 105-127, 131-153, FT 160-182, 187-209, 222-244, 249-266, 286-308, 340-362, FT 369-386 and 432-454" FT CDS 1230773..1232470 FT /transl_table=11 FT /locus_tag="BP1165" FT /product="sodium/solute symporter" FT /note="Similar to Escherichia coli sodium/pantothenate FT symporter PanF or B3258 SW:PANF_ECOLI (P16256) (483 aa) FT fasta scores: E(): 7.4e-16, 25.22% id in 448 aa, and to FT Haemophilus influenzae sodium/pantothenate symporter PanF FT or Hi0975 SW:PANF_HAEIN (P44963) (484 aa) fasta scores: FT E(): 8.4e-14, 22.05% id in 467 aa" FT /protein_id="CAE41462.1" FT /translation="MQESEFFQLSGTTAVLLLVAFYGATFLMSLMIGQKKENVDGYMVS FT NSSVGFGLSAASMIATWIWAASFYASATSGFKYGLSGPIQYGFWGALMILFIYPFGKRF FT RQLAPKAHTLAEVIHARHGASSQMIMAVSNIVGSCISLMVNFTAAGALVSVLSPLSFIQ FT GVLIAGLGVLSYTLWSGFRASVMTDFAQLVAMILAAVIIIPLIFFNAGGPDMLQANMWR FT LSSEQADFFSTTAILEQGAPYFVAVLAYAIGNQTIAQRLFAVREDLIKPTFLTATIGYG FT AVVIGLDMLGLLALFVGLEPVNGNMNNIIPQMASTYLPPVGIALFFILVVGSLSSTADS FT DLAALSAIVITDIYAKNLAGGRPDPRRMLWWGRATMIVATMVGVIFASLRLDILVMLVF FT VGALWGAIVFPVIASFYWDRVSNSAFFWSVISAVVLFTIVRFELVPIEGAVAVFYEICA FT AIGGGVVIGLMSFAFFGRVTALTLGTLATLILLPCFVGTLREYIVLLGSLTAYGVSTVV FT CVALSLRNQERFDFSLLAERVTSFHYEKARMMGAKPAAPAAQPQPARG" FT misc_feature join(1230803..1230871,1230908..1230976,1231004..1231072, FT 1231163..1231231,1231247..1231315,1231334..1231402, FT 1231460..1231528,1231586..1231654,1231697..1231765, FT 1231877..1231945,1231955..1232023,1232042..1232110, FT 1232120..1232188,1232207..1232260,1232273..1232341) FT /note="15 probable transmembrane helices predicted for FT BP1165 by TMHMM2.0 at aa 43-65, 78-100, 110-132, 163-185, FT 191-213, 220-242, 262-284, 304-326, 341-363, 401-423, FT 427-449, 456-478, 482-504, 511-528 and 533-555" FT misc_feature 1230896..1232068 FT /note="HMMPfam hit to PF00474, Sodium:solute symporter FT family" FT CDS 1232499..1232621 FT /transl_table=11 FT /locus_tag="BP1165A" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE41463.1" FT /translation="MLLTLYFLAWPVVSAAVLLVLIVTLWRDIRDARATGKSMI" FT misc_feature 1232508..1232576 FT /note="1 probable transmembrane helix predicted for BP1165A FT by TMHMM2.0 at aa 4-26" FT CDS complement(1232697..1233638) FT /transl_table=11 FT /gene="ldcA" FT /locus_tag="BP1166" FT /product="putative muramoyltetrapeptide carboxypeptidase" FT /EC_number="3.4.17.13" FT /note="Similar to Escherichia coli muramoyltetrapeptide FT carboxypeptidase LdcA or B1192 SW:LDCA_ECOLI (P76008) (304 FT aa) fasta scores: E(): 1.3e-16, 32.83% id in 265 aa, and to FT Streptomyces coelicolor hypothetical protein Sc9c7.25 FT SW:YC25_STRCO (Q9ZBI5) (310 aa) fasta scores: E(): 7.3e-24, FT 40.62% id in 320 aa" FT /protein_id="CAE41464.1" FT /translation="MPALRAGARITIVAPASAIAGAADEAAEWLLERGYEPQVMPAARA FT RLAPPFDYLAGDDAARLADLHAAFADPAVGAVWCLQGGFGSWRVLDQIDYGLLRRHAKP FT FIGYSDVTALHLAIQRYAGFVTFHGPMLAQDLLAGRQAPTEQALLDMVSGRLGAGSWIA FT APPQARLATLASGVATGRLIGGNLALLAALTGTRYAIDARDGILFFEDVNEALPRVDRM FT LAQLRRAGAFDGVRGVLVGSFTRLLGVPGDGEAAQAALYPLVREHFQARGIPVLAGWPS FT GHGDPNLTLPLGARVTLDAGRGALRLEQPVAV" FT misc_feature complement(1232715..1233122) FT /note="HMMPfam hit to PF02016, Uncharacterized protein FT family UPF0094" FT misc_feature complement(1233240..1233404) FT /note="HMMPfam hit to PF02016, Uncharacterized protein FT family UPF0094" FT misc_feature complement(1233573..1233638) FT /note="Signal peptide predicted for BP1166 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.946) with cleavage site FT probability 0.636 between residues 22 and 23" FT CDS 1233965..1234711 FT /transl_table=11 FT /locus_tag="BP1167" FT /product="putative adolase" FT /note="Similar to Rhizobium meliloti putative FT adolase/adducin sma1976 TR:AAK65743 (EMBL:AE007294) (249 FT aa) fasta scores: E(): 3.9e-36, 48.01% id in 227 aa, and to FT Pseudomonas aeruginosa hypothetical aldolase class ii FT protein Pa3430 SW:YY30_PSEAE (Q9HYH5) (259 aa) fasta FT scores: E(): 6.5e-19, 34.48% id in 232 aa" FT /protein_id="CAE41465.1" FT /translation="MPPSAPTDSARSLYQDTAVAALRDDLALALCAAAHHGLGEGVCNH FT FSVALPGQAGAFLLNPRGLMWSEVRAEDIVLVDAAGNKLAGRHEVEPTAMFIHAAIHQV FT AGKACVLHTHMPYATALTLTEARMLDTTLSQNAMRFHGRVAADRRYNGLALDAAEGERI FT ARAMDGADIAFLGNHGVVVCGERIDYAFDDLYYLERACCAQVLAESSGRPLVPLDAALA FT ASVAGQARSERLQSTLFFEALRRALG" FT misc_feature 1233980..1234009 FT /note="ScanRegExp hit to PS00215, Mitochondrial energy FT transfer proteins signature." FT misc_feature 1234022..1234669 FT /note="HMMPfam hit to PF00596, Class II Aldolase and FT Adducin N-terminal domain." FT CDS complement(1234719..1235624) FT /transl_table=11 FT /locus_tag="BP1168" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT activator protein LysR or B2839 SW:LYSR_ECOLI (P03030) (311 FT aa) fasta scores: E(): 3.4e-21, 32.36% id in 275 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT Pa5085 TR:Q9HU98 (EMBL:AE004921) (318 aa) fasta scores: FT E(): 7.8e-27, 34% id in 300 aa" FT /protein_id="CAE41466.1" FT /translation="MRFKLRQMEAFRAVMLTGSMNGVARLLFVSQPAVSRLIAHAEQSL FT GLRLFERDKGKLTPTAEAQRLFEEVGQLFDEALRIDELARDLAERPEGELKLCSSPSLA FT LNFLPPVIARYVNEHPRVRLKYHTTLLSDMAHELLGRKVELAVSVLPIDNPNLVVEPFA FT TGHMVCILPQGHALARQDSVGLAELARNRLVLYSRNIPFGQLVAAAFQRANVPWRATVD FT IVRAELACALVRSGVGVAIVDEFSVAGGGWPGIEVRPLREPIPLALSLVRSRFERPGRQ FT AQRFVKLLKEQAQRRAAAVQ" FT misc_feature complement(1235184..1235612) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(1235508..1235573) FT /note="Predicted helix-turn-helix motif with score 1503 FT (+4.31 SD) at aa 25-46, sequence GSMNGVARLLFVSQPAVSRLIA" FT CDS 1235767..1236684 FT /transl_table=11 FT /locus_tag="BP1169" FT /product="putative oxidoreductase" FT /note="Similar to Escherichia coli FT 2-hydroxy-3-oxopropionate reductase GarR or B3125 FT SW:GARR_ECOLI (P23523) (294 aa) fasta scores: E(): 6.8e-21, FT 31.61% id in 291 aa, and to Homo sapiens FT 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor FT HibadH SW:D3HI_HUMAN (P31937) (336 aa) fasta scores: E(): FT 1.9e-21, 32% id in 300 aa" FT /protein_id="CAE41467.1" FT /translation="MMQTLGFVGLGMMGLPMLENLAGDERWQILAYDRSPAPFERLAGH FT PAWGKRLRAAAGLQELAACDTVITMLPNSAITNAVVLGGDGQPGLIDLLESGAAIVDMG FT SSNPADTRRLSEQLAARGLTLIDAPVSGAVAKASTGTLAIMAGAAEADLRRVRPILERM FT GAAIIHTGAVGSAHAMKALNNYVYAAGLLAVSEAMVIARRMELDLEVFTDVLNASSGRN FT VASETKLRQFIIPGTYNGGFALALMAKDLGTAQSLQALTGVQADQLALCAELWRQALAQ FT LPGGADNTEIHRFLAQRTPATEPA" FT CDS 1236724..1237677 FT /transl_table=11 FT /locus_tag="BP1170" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 4.1e-36, 37.73% id in 318 aa, and to Burkholderia cepacia FT hypothetical 35.5 kDa protein TR:AAK81675 (EMBL:AF029344) FT (337 aa) fasta scores: E(): 1.4e-32, 35.69% id in 311 aa" FT /protein_id="CAE41468.1" FT /translation="MFKPLFATAALALAIGQATAAYPERPIRMVVPFPPGSITDVVARS FT LGQGMAAELGQPVVVENKPGANGIIGTQDVVKAQPDGYTLVVVGVSTAASGVSLFKNLP FT YDPARDLTPIGAVAETPYLLVGGQDVAGKTVADLYDYGRQHPGKLTYAYGSGSAQVFGA FT KLAAMGDITVTPVPYRGGPQALTDVIGGTVDLTFTDLANGLQQARAGKVKVYGVSTPGR FT FALTPDIPTLNESGAPGFDLTVWFGLMGPAGLPPAVTERLAGALDKALAAPELTQTYAR FT QGLSVKTQGPAAFGAFVRSEIDKWAGIVKETGIAPQ" FT misc_feature 1236724..1236783 FT /note="Signal peptide predicted for BP1170 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.904 between residues 20 and 21" FT misc_feature 1237102..1237125 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 1237702..1238280 FT /transl_table=11 FT /locus_tag="BP1171" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mll4877 protein TR:Q98D37 FT (EMBL:AP003005) (194 aa) fasta scores: E(): 1.2e-33, 49.48% FT id in 194 aa, and to Eubacterium barkeri hypothetical FT protein in mgm 5' region TR:Q45883 (EMBL:X77484) (123 aa) FT fasta scores: E(): 5.3e-16, 44.53% id in 119 aa" FT /protein_id="CAE41469.1" FT /translation="MSLIEIRKRTLIVETTYHENGPAPAQPLKLAASCAVIRNPYAGRY FT EPDLMPFMAELRSLGTLLATELVDTLGKDNIEVYSKAAIVGVDGEMEHGAVWHEAGGWA FT MRSVLGEPKAMVPAVKAVATAGYRMMVPVHYIHASYVRSHFNSIEIGIQDAPRPREILF FT ALVMGTGARVHARLGGLTKEAVSVHDGQR" FT CDS complement(join(1238295..1238729,1238729..1238857, FT 1238857..1239879)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1172" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have two frameshift FT mutations, following codons 341 and 384. The sequence has FT been checked and believed to be correct. Similar to FT Pseudomonas aeruginosa hypothetical protein Pa1331 FT TR:Q9I413 (EMBL:AE004562) (515 aa) fasta scores: E(): FT 6.6e-84, 50.86% id in 523 aa, and to Agrobacterium FT tumefaciens Agr_l_1024p TR:AAK89085 (EMBL:AE008249) (518 FT aa) fasta scores: E(): 5e-89, 52.81% id in 515 aa" FT /db_xref="PSEUDO:CAE41470.1" FT variation complement(1238728..1238729) FT /note="(C)2 pertussis; (C)3 in parapertussis and FT bronchiseptica" FT variation complement(1238858) FT /note="(C)1 in pertussis; (C)2 in parapertussis and FT bronchiseptica" FT misc_feature complement(join(1239178..1239234,1239250..1239315, FT 1239337..1239402,1239448..1239504,1239568..1239624, FT 1239655..1239720,1239781..1239846)) FT /note="7 probable transmembrane helices predicted for FT BP1173 by TMHMM2.0 at aa 85-107, 127-149, 159-178, 199-218, FT 233-255, 262-284 and 289-308" FT CDS 1239954..1240562 FT /transl_table=11 FT /locus_tag="BP1174" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE41471.1" FT /translation="MGRRARRPGSGRRFFGHGGYDPRHGDLIRLPLHFYKFPAAELPGA FT RPGPTLYRLASEHAMEIAALTWSTPLARLAPVPPRTPAAPPSHDWPHAAPSVRPHGAAG FT PAAAPVDLLRDLHAQARMARAVAAYQAEQAARQTAARSPCAAQDLGDIDCLMVLQAYRV FT AMPNAPVQDLQGMPPAAQRGSPAVGPIARTGPADQQIRR" FT CDS complement(1240640..1240993) FT /transl_table=11 FT /locus_tag="BP1175" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0320 TR:Q9I6H1 (EMBL:AE004470) (116 aa) fasta FT scores: E(): 3.7e-06, 35.05% id in 97 aa, and to FT Escherichia coli protein YgiW precursor or B3024 or Z4376 FT or Ecs3906 SW:YGIW_ECOLI (P52083) (130 aa) fasta scores: FT E(): 3.8e-05, 36.63% id in 101 aa" FT /protein_id="CAE41472.1" FT /translation="MSKSIVLTLATQAGLAQAQYVGPSSNQQMSVKELLDTARDDAVVT FT LRGKLVKQLSDDTYLLDDGTGRVQVEIDRHLFPPNQPVDANTLVEVSGEFDKEVIGTSE FT VEAKALRILGAAK" FT misc_feature complement(1240940..1240993) FT /note="Signal peptide predicted for BP1175 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.829 between residues 18 and 19" FT CDS complement(1241077..1242066) FT /transl_table=11 FT /gene="astE" FT /gene_synonym="aruE" FT /locus_tag="BP1176" FT /product="putative succinylglutamate desuccinylase" FT /EC_number="3.1.-.-" FT /note="Similar to Pseudomonas aeruginosa succinylglutamate FT desuccinylase AstE or AruE or Pa0901 SW:ASTE_PSEAE (O50177) FT (332 aa) fasta scores: E(): 0.23, 25.82% id in 302 aa, and FT to Agrobacterium tumefaciens Agr_pat_335p TR:AAK90609 FT (EMBL:AE007893) (335 aa) fasta scores: E(): 0.0023, 26.44% FT id in 276 aa" FT /protein_id="CAE41473.1" FT /translation="MNTPTPVFTDYLRAHQFLGMQPGPRLLVLGAVHGNEVCGTRAIER FT ILAELESGALAITRGQLTLLPVTNPLAYRKGERQGDRNLNRNLRVCATPTDYEDRIGNA FT LCPLLQAHDVLLDLHSFHTGGQPFAMLGPRDNQEALEPFAHAREEARLVAHLGPRRVVE FT GWMQAYERGVRRRREQNPGAPAALLDAAYGVGSTEYFRAHGGYGVTLECGQHDDPAAPE FT VAYRAIRQTLALLGLADIALEPPRRDFETLCLVDVVDREADGDAFARPWASFDPVRQGE FT LVGTRADGRQVLAPRDGYVVFPNPRALAGNEWFYFAVASDRLGEDAGN" FT repeat_region 1242167..1242198 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1242167..1243219 FT CDS 1242269..1243219 FT /transl_table=11 FT /locus_tag="BP1177" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41474.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 1242527..1242592 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1242650..1243183 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1243188..1243219) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1243285..1244148) FT /transl_table=11 FT /locus_tag="BP1178" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2712 TR:Q9I0D0 (EMBL:AE004699) (287 aa) fasta FT scores: E(): 6.3e-48, 52.77% id in 288 aa, and to Rhizobium FT loti Mlr3480 protein TR:Q98G57 (EMBL:AP003002) (303 aa) FT fasta scores: E(): 3.5e-08, 31.67% id in 281 aa" FT /protein_id="CAE41475.1" FT /translation="MPFNQTVWAARGSTALFVLLWSSGAIFAKWGLDYASPFAFLVLRF FT ALALAVLTALGLRAGRCLPAPGTRLRTAATGALLLGGYSICYLLALQHGVTPGVLATVL FT GVQPLLTLLWLERDLPARRLAGLTLALAGLVLVVWRNIDVARLNHAGMAYALAALGCMT FT AGALLQKGSRQAPGEVLPLQYATSLALCLALAPGQPWQVQWSPGFVAAWLWLALVISVA FT ATLLLYRLIQGGNLVNVTSLFYLVPPGTALLDYLLLGNRPAPASLAGMAAIVAGLGLVF FT GRRRAH" FT misc_feature complement(1243303..1243674) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature complement(join(1243303..1243359,1243375..1243440, FT 1243456..1243521,1243648..1243713,1243735..1243791, FT 1243864..1243929,1243969..1244034,1244065..1244127)) FT /note="8 probable transmembrane helices predicted for FT BP1178 by TMHMM2.0 at aa 7-28, 38-60, 73-95, 119-138, FT 145-167, 209-231, 236-258 and 263-282" FT misc_feature complement(1243732..1244094) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature complement(1244065..1244148) FT /note="Signal peptide predicted for BP1178 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.926) with cleavage site FT probability 0.882 between residues 28 and 29" FT CDS complement(1244494..1245429) FT /transl_table=11 FT /locus_tag="BP1180" FT /product="LysR-family transcriptional regulator" FT /note="Similar to the previously sequenced Bordetella FT pertussis Brg1 TR:O30441 (EMBL:AF006000) (291 aa) fasta FT scores: E(): 8e-11, 28.74% id in 254 aa, and to Yersinia FT pestis similar to hypothetical transcriptional regulator FT TR:Q9ZC44 (EMBL:AL031866) (320 aa) fasta scores: E(): FT 8.5e-23, 30.36% id in 303 aa" FT /protein_id="CAE41476.1" FT /translation="MYTLKQLEAFYWSAVLGSFSASSRKLHTTQSAVAKRVGELEGFAG FT TPLFERRAKSLVLTQPGRKLFEGAREMLELNSRMVLDMADPSRFEGSVRLGVTELVALT FT SLAGVIERLNQRYPKIQLVPEIEAGITMYQQLERDELDLAIMPGPFWSYEYDCVQLGSV FT TNVWMASPALALDAARALTPHDLAPFPVISQPQNSALSHLYDAWFAQQGLSVKRVLTCN FT SLAMMAQLTMLGLGISHLPSAYFDPLVARGALCRLRVQPDLPTIHYYAVYKKSLINPVV FT STVIDIARETCNFEVEGAFLPLPPGGLRSG" FT misc_feature complement(1244995..1245420) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(1245286..1245378) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(1245316..1245381) FT /note="Predicted helix-turn-helix motif with score 1013 FT (+2.64 SD) at aa 43-64, sequence GSFSASSRKLHTTQSAVAKRVG" FT CDS complement(1245542..1246279) FT /transl_table=11 FT /gene="glnQ" FT /locus_tag="BP1181" FT /product="amino acids ABC transporter, ATP-binding protein" FT /note="Similar to Bacillus stearothermophilus glutamine FT transport ATP-binding protein GlnQ SW:GLNQ_BACST (P27675) FT (242 aa) fasta scores: E(): 1.6e-52, 61.15% id in 242 aa, FT and to Pseudomonas aeruginosa probable ATP-binding FT component of ABC transporter Pa4192 TR:Q9HWI9 FT (EMBL:AE004835) (247 aa) fasta scores: E(): 9.6e-59, 70.29% FT id in 239 aa" FT /protein_id="CAE41477.1" FT /translation="MIKLEGVNKWYGEHHVLKDVSLEVGRGEVLVVCDPSGSGKSTLIR FT TINRLEPIGKGVIRIDGQDIHAKGVNINTLRRGIGFVFQQFNLFPHMSVLDNVTYAPLH FT ILKTPRREAEALAHQLLERVGMAHKAQAYPGALSGGQQQRVAIARALALKPPIMLFDEP FT TSALDPEMVGEVLQVIKSLARDGMTMVCVTHEMGFAREVSDRVIFMDAGEILEIATPQR FT FFSAPEHPRAQRFLADIIGHHPA" FT misc_feature complement(1245644..1246201) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(1245827..1245871) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(1246299..1246988) FT /transl_table=11 FT /locus_tag="BP1182" FT /product="amino acids ABC transporter, permease protein" FT /note="Similar to Pseudomonas aeruginosa probable permease FT of ABC transporter Pa4193 TR:Q9HWI8 (EMBL:AE004835) (234 FT aa) fasta scores: E(): 3.1e-45, 57.33% id in 218 aa, and to FT Agrobacterium tumefaciens Agr_l_1163p TR:AAK89156 FT (EMBL:AE008256) (252 aa) fasta scores: E(): 4.6e-43, 52.42% FT id in 227 aa" FT /protein_id="CAE41478.1" FT /translation="MLDILHDYWPMLLVGQYPNGPLGGLALTLILALLGLLLSMPLALL FT IAIARVSPFRGLRVASRLLVNTVRGMPLLMLIFWAYFAVPKLTGGSISGFWTLVTALVI FT YESAYLSEVIRSGIEAIPKGQIEASRSLGVGYWTTMRKVVLPQALFNVLPSMTSQFVST FT IKETSLGYVISVNELTFAANQVNNLVLTQPLQVFGILAIIYFLVCFSLSRSVAWLDSWV FT RRSRSMA" FT misc_feature complement(join(1246335..1246400,1246737..1246802, FT 1246842..1246907)) FT /note="3 probable transmembrane helices predicted for FT BP1182 by TMHMM2.0 at aa 27-49, 62-84 and 196-218" FT misc_feature complement(1246428..1246640) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(1246551..1246637) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(1246981..1247670) FT /transl_table=11 FT /locus_tag="BP1183" FT /product="amino acids ABC transporter, permease protein" FT /note="Similar to Escherichia coli glutamate/aspartate FT transport system permease protein gltj gltj or b0654 FT SW:GLTJ_ECOLI (P41074) (246 aa) fasta scores: E(): 6.4e-22, FT 32.47% id in 234 aa, and to Pseudomonas aeruginosa probable FT permease of ABC transporter Pa4194 TR:Q9HWI7 FT (EMBL:AE004835) (232 aa) fasta scores: E(): 7.6e-36, 47.03% FT id in 219 aa" FT /protein_id="CAE41479.1" FT /translation="MFFLDAHYLSQLADGMMTTVQLFLVAWVLAFTLAVLLVVIRTTNL FT APCRWFVDAYVEYHRNVPLLVQVLFWYFGMPELLPEGVRGWLYQHNAELSLAAIALGLG FT SAAYIAEDIRSGLRAIPGTQFEAARALGSSYLQCMRHVIVPQALRISIPPLVGRALLLF FT KNTSVAMAIGVVELTYQAREIENETYRTFATFGAATLMYLLGSFLLMFIGSRVYARYNI FT GSGGRRA" FT misc_feature complement(join(1247032..1247097,1247128..1247193, FT 1247551..1247616)) FT /note="3 probable transmembrane helices predicted for FT BP1183 by TMHMM2.0 at aa 18-40, 159-181 and 191-213" FT misc_feature complement(1247113..1247325) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(1247236..1247322) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(1247242..1247307) FT /note="Predicted helix-turn-helix motif with score 1010 FT (+2.63 SD) at aa 122-143, sequence GTQFEAARALGSSYLQCMRHVI" FT CDS complement(1247774..1248490) FT /transl_table=11 FT /locus_tag="BP1184" FT /product="probable solute-binding protein" FT /note="Similar to Escherichia coli cystine-binding FT periplasmic protein precursor FliY or B1920 SW:FLIY_ECOLI FT (P39174) (266 aa) fasta scores: E(): 4.8e-13, 26% id in 223 FT aa, and to Pseudomonas aeruginosa probable binding protein FT component of ABC transporter Pa4195 TR:Q9HWI6 FT (EMBL:AE004836) (276 aa) fasta scores: E(): 8.1e-24, 36.17% FT id in 235 aa" FT /protein_id="CAE41480.1" FT /translation="MLCGTLGTSQPFSYQDAATRTVVGYDVDMCKLVADKLGVKVNYKL FT LSVAARVPELNESRVDILAANLGYSPERAEQIAFSHTYYVSPQKLLVRKDSNLQTIESV FT NGRRVAATKGSSSEREIKRILDKSQVLGFTDSSASYLALQQKKVDAQFASELVLVRLML FT QSPPTAPVSIIDKAVFDEPWGLGMRKSETRFIAKVNEILDQAEASGEAQRLFEKWFGAQ FT TPYKLQRSFKIGPIAG" FT misc_feature complement(1247828..1248490) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT misc_feature complement(1248380..1248421) FT /note="ScanRegExp hit to PS01039, Bacterial extracellular FT solute-binding proteins, family 3 signature." FT CDS complement(1248653..1249855) FT /transl_table=11 FT /gene="aspC" FT /gene_synonym="aatA" FT /locus_tag="BP1185" FT /product="aspartate aminotransferase" FT /EC_number="2.6.1.1" FT /note="Similar to Rhizobium leguminosarum aspartate FT aminotransferase AspC or AatA SW:AAT_RHILP (O86459) (400 FT aa) fasta scores: E(): 3.8e-76, 51.76% id in 396 aa, and to FT Rhizobium meliloti aspartate aminotransferase A AatA or FT R02325 or smc01578 SW:AATA_RHIME (Q02635) (400 aa) fasta FT scores: E(): 4.4e-76, 50.75% id in 396 aa" FT /protein_id="CAE41481.1" FT /translation="MSIVADKIKRIKLSPSVATRAIVAQLREEGRRVIDLTVGEPDFST FT PAHICEAAIAAMQRGETKYPPAQGTMPLRKAVRARLREETGVDYPEGRIIVGTGAKQVL FT YNGLAATLNEGDEVIIPAPYWVSYPDMVLVNGGVPVAVTATPATQYKLTPQALEAAITP FT RTKWLMMNAPSNPTGAIYTADEWRGLAEVLRRHPHVWLMTDDIYARLNFTATPTVHPLQ FT VAPELAERTLVVNGVSKAYAMTGWRIGYGAGPEALIKAIAILQSQSTSGACSISQAAAR FT EALAGPQDCVAEFARTFKARRDAAVAALQGAPGLSVVMPEGAFYVFPDCAGVLGKTTPD FT GRVLETDTDFVHYLLREAGVAVIDGTPYGVPGTFRLSFAAALEDIQQGCAAIRAACERL FT A" FT misc_feature complement(1248662..1249855) FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II" FT misc_feature complement(1249109..1249150) FT /note="ScanRegExp hit to PS00105, Aminotransferases class-I FT pyridoxal-phosphate attachment site. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(1249852..1250532) FT /transl_table=11 FT /locus_tag="BP1186" FT /product="putative aldolase" FT /note="Similar to Pseudomonas straminea FT 4-hydroxy-4-methyl-2-oxoglutarate aldolase ProA TR:Q9AQI0 FT (EMBL:AB050935) (227 aa) fasta scores: E(): 1.2e-20, 39.37% FT id in 193 aa, and to Agrobacterium tumefaciens Agr_pat_472p FT TR:AAK90703 (EMBL:AE007901) (227 aa) fasta scores: E(): FT 2.8e-31, 46.39% id in 222 aa" FT /protein_id="CAE41482.1" FT /translation="MSSIGFRILPLPEPPAADEVLAGFAQIGTAQISDCMGRLYGVQGL FT RPLHAGAARIVGRAITVKTRPGDNLMIHKAISLAGPGDVIVVDGAGETANALVGELMMM FT DAQSRGVAAFVIDGAVRDLDVFQQGAFGCFARAVSHKGPYKDGPGEINVPVSIGGQVVA FT AGDVIVGDADGVVAIPLAQAGAVLAAARRKEDAELAAKEKLRAGTYAKPWVDRIIAEKT FT GDAQ" FT CDS 1251169..1252053 FT /transl_table=11 FT /locus_tag="BP1188" FT /product="hypothetical protein" FT /note="Similar to the internal region of Bordetella FT bronchiseptica adhesin FhaB TR:Q9JP78 (EMBL:AF111796) (3634 FT aa) fasta scores: E(): 0.8, 28.31% id in 226 aa" FT /protein_id="CAE41483.1" FT /translation="MQLTKNFVKAKNPCTAGYRWFLRDHNGHGEYQPVLDALVEAGRID FT DAMWLIDQFGPTDQVLNLDTLDAPALVFAGTVTVRRGITVDGVLRAGRNIVCGAGIRAG FT TLVQAGEGIDARGSIVCDGDVQAGGDIQTTWGVQVGKRLTVGGQLRAGWDIRTGGDLNV FT AGPIRAGDAVVSGGILKCEQGIRAGQDVQAEYDINVVSGIQAGGSILAGGHVETGWGMI FT AGHDIVADGAIRSGEGLEAGGRIEAGEGHGVYAGLRVRVDAWPDSARVAAARCFGPLLS FT GHWIGAAALDAQA" FT CDS 1252065..1252283 FT /transl_table=11 FT /locus_tag="BP1188A" FT /product="hypothetical protein" FT /note="Similar to Homo sapiens MHC class III region FT complement C4A TR:Q30211 (EMBL:S58715) (79 aa) fasta FT scores: E(): 4.1, 32.87% id in 73 aa" FT /protein_id="CAE41484.1" FT /translation="MAYPRVMQRLPDQAVAGDPRPQPPEPPEPSDCCQSGCIPCVYDLY FT DEARERYQEALRAWRARHPEAAGGGDA" FT CDS complement(1252291..1252719) FT /transl_table=11 FT /locus_tag="BP1189" FT /product="lipoprotein" FT /note="Similar to Vibrio cholerae lipoprotein Vc1962 FT TR:Q9KQN6 (EMBL:AE004271) (163 aa) fasta scores: E(): FT 5.4e-15, 42.63% id in 129 aa, and to Treponema pallidum 17 FT kDa lipoprotein precursor Tpp17 or Tp0435 SW:TA17_TREPA FT (P29722) (156 aa) fasta scores: E(): 0.0073, 30.06% id in FT 153 aa" FT /protein_id="CAE41485.1" FT /translation="MKTLLPVLALAALLSACNANAPSDTPEGAPPPDTHTSRNSLDWQG FT TYQGVLPCADCPGIRTVLTLRADNTYQLQTQYLERQPRPDTVQGRFGWLTGDNAIELDS FT AGDHYRYQVGENRLTMMSQDGTLPSGPLAEHYVLKRSQ" FT misc_feature complement(1252657..1252719) FT /note="Signal peptide predicted for BP1189 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.653 between residues 21 and 22" FT misc_feature complement(1252669..1252701) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1252947..1253393 FT /transl_table=11 FT /locus_tag="BP1190" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mll1641 protein TR:Q98K47 FT (EMBL:AP002997) (152 aa) fasta scores: E(): 1e-31, 54.11% FT id in 146 aa, and to Agrobacterium tumefaciens Agr_c_871p FT TR:AAK86305 (EMBL:AE007984) (167 aa) fasta scores: E(): FT 1.3e-30, 52.05% id in 146 aa. Also similar to BP2382, FT 42.553% identity (42.553% ungapped) in 141 aa overlap." FT /protein_id="CAE41486.1" FT /translation="MKPRMNPYTVAPRTMQALMALQSYVNDCGLEHSLLELVKMRASQI FT NGCAFCLNLHYTEARRQGESELRLQLLNAWRESPLYTARERAALAWTEALTLLAQTRAP FT DADYAELATHFDELERVNLTMAINTINAWNRIAVGFRSLHPVNE" FT CDS 1253386..1254291 FT /transl_table=11 FT /locus_tag="BP1191" FT /product="putative RNA polymerase sigma factor" FT /note="Similar to Caulobacter crescentus putative RNA FT polymerase sigma factor Cc3266 TR:Q9A3D8 (EMBL:AE005990) FT (291 aa) fasta scores: E(): 2.9e-50, 53.19% id in 282 aa, FT and to Streptomyces coelicolor putative RNA polymerase FT sigma factor 2 Scg18.10C TR:Q9K3H7 (EMBL:AL390188) (295 aa) FT fasta scores: E(): 3.5e-39, 42.76% id in 297 aa" FT /protein_id="CAE41487.1" FT /translation="MSKTAAITIDTPGADDFEPHRRHLYGLAYRMLGSWSEAEDIVQET FT WLRWREIDPATLDNARAFLSRIATRLCLDVLKSARVRRQVYVGPWLPEPLPDAQAYAGA FT APGEIAHDVSVALMLALERLSASERAAFLLHDVFDVPFAEIAGTLGRTEAGCRQLAARA FT RNRVRESRPRFAVEESEGIRLARAFIDAAQHGDVDILRQLLADDAVLHSDGGGKKLAFM FT RPIQGRANIVRAFAGLARKGQSDLSSVRIVQLNGMPAIYGIERDGLPRTISLGVCGGRI FT VRVYIMRNPDKLAHLARFTG" FT misc_feature 1253461..1253622 FT /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF FT subfamily)" FT CDS 1254436..1254762 FT /transl_table=11 FT /locus_tag="BP1192" FT /product="putative exported protein" FT /note="Similar to Burkholderia cepacia phosphate transport FT protein TR:Q9RMS6 (EMBL:AF190626) (181 aa) fasta scores: FT E(): 7.3, 31.63% id in 98 aa" FT /protein_id="CAE41488.1" FT /translation="MKTTHRILAAGLLAALCAAASAAQAQAVQQQYQYPSAPSKDGSQS FT PPSTLRITETPGAAAVPIRDTPESVREYQRCRDVSDRAAVSNEQMRAGVAQCLKELEAR FT RQAG" FT misc_feature 1254436..1254510 FT /note="Signal peptide predicted for BP1192 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.751 between residues 25 and 26" FT CDS 1254787..1255005 FT /transl_table=11 FT /locus_tag="BP1193" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3612 TR:Q9HY14 (EMBL:AE004781) (73 aa) fasta FT scores: E(): 1.6e-11, 51.47% id in 68 aa, and to Vibrio FT cholerae hypothetical protein Vca0163 TR:Q9KN03 FT (EMBL:AE004357) (70 aa) fasta scores: E(): 4.5e-09, 49.2% FT id in 63 aa" FT /protein_id="CAE41489.1" FT /translation="MNPQLLALLVEREMPYGKYKGRLMADLPGHYLAWFARNGFPAGEI FT GRLLALMHELDHNGLRDLLKPLRGGRA" FT CDS 1255055..1255672 FT /transl_table=11 FT /locus_tag="BP1194" FT /product="conserved hypothetical protein" FT /note="Similar to Thermotoga maritima conserved FT hypothetical protein Tm1181 TR:Q9X0R3 (EMBL:AE001774) (179 FT aa) fasta scores: E(): 7.8e-26, 45.18% id in 166 aa, and to FT Bacillus halodurans Bh1524 protein TR:Q9KCP5 FT (EMBL:AP001512) (183 aa) fasta scores: E(): 7.4e-24, 41.95% FT id in 174 aa" FT /protein_id="CAE41490.1" FT /translation="MSAARMPANAMSADPSDSSHLVETLVSSETLCDGGFLKARRDTVR FT LPSGRNATREYIVHPGAVVVVPLLDDGRVLLERQFRYPIGQVMTEFPAGKLDPGEDPLA FT CARRELLEETGYTAGQWASAGALHLAIAYSTEIIHIFFARQLRAGTRQLDEDEFLDVHS FT ATVPELLQACREGRVTDAKTLTCVLWLQNVLAGDWPLDWQPA" FT misc_feature 1255229..1255624 FT /note="HMMPfam hit to PF00293, MutT-like domain" FT misc_feature 1255334..1255399 FT /note="ScanRegExp hit to PS00893, Nudix hydrolase FT signature." FT CDS 1255669..1256010 FT /transl_table=11 FT /locus_tag="BP1195" FT /product="ferredoxin" FT /note="Similar to Synechococcus sp ferredoxin II FT SW:FER2_SYNP6 (P08451) (104 aa) fasta scores: E(): 0.00022, FT 37.5% id in 96 aa, and to Vibrio cholerae ferredoxin Vc0311 FT TR:Q9KV47 (EMBL:AE004119) (89 aa) fasta scores: E(): FT 1.3e-06, 40.47% id in 84 aa" FT /protein_id="CAE41491.1" FT /translation="MNPAGHEVEVRPQGWRFDARPGESLLRAAARAGIRLPSSCRNGTC FT RTCLCRLVAGEVAYLVEWPGVSADEKAQGWILPCVAQALAPVAIEAPQATPLPPKPPPS FT TLLTGARRA" FT misc_feature 1255684..1255923 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT CDS complement(1256044..1257198) FT /transl_table=11 FT /locus_tag="BP1196" FT /product="putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE41492.1" FT /translation="MTGTPRAPMVSGLFRIGALLAAGLLCGGAWAQDAEADPYGDPIVA FT PRAAPPQWKPLKIDPPGHRYAFPLYSSKNLERDDLRGIRRLVIVLHGVKRNAASIHGTV FT TALFAANPERAEDTLVIAPKFASAIDAGFAAMPAWRRASWEDGELSMQARGRPAPVSSL FT QVLDDLLHELSDSSRLPALRTIVLAGHSGGAQLVQRYAVLNSLDETLRREGLTLQYVVA FT NPSSYLYLSPERPRADGKGHAPYERGICPTYNQYKYGLDHLPAYARGLDPASLPARYAQ FT RHVTYLLGSADNNPEHQLLDKSCGAEAQGATRLARGLGYWRYEAGVLAPRLPRSVAWHH FT DAQEVVDAGHDAAQMFSSSCGARALLGDRSAPLPDGPACLPARR" FT misc_feature complement(1257106..1257198) FT /note="Signal peptide predicted for BP1196 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 31 and 32" FT CDS complement(1257195..1257923) FT /transl_table=11 FT /gene="btr" FT /locus_tag="BP1197" FT /product="transcriptional regulatory protein" FT /note="Similar to the previously sequenced Bordetella FT pertussis transcriptional regulatory protein Btr FT SW:BTR_BORPE (Q08530) (241 aa) fasta scores: E(): 9.9e-65, FT 78.68% id in 244 aa. The previously sequenced btr may FT contain a frameshift following codon 26." FT /protein_id="CAE41493.1" FT /translation="MQRRVPLSPDAAHCSSCMLGHVCVPVGMPANEVEKLDELVKERVR FT VERGKTLYELDDPLDAVYGVRFGSLKTQLEDSSGQLQITGFHLPGEIVGLDGMIESKHV FT SSAVALEDSEVCVIRLPEIDRVSTQLPSLQQQFRRLMSREITRSHQMLATVGAMRSEQR FT LAAFLLNLSQRYAALGYSSTEFVLRMSREEIGNYLGLTLETVSRLFSRFGREGLIRINQ FT REVRLIDLPGLKQLIGQESC" FT misc_feature complement(1257270..1257365) FT /note="HMMPfam hit to PF00325, Bacterial regulatory FT proteins, crp family" FT misc_feature complement(1257288..1257359) FT /note="ScanRegExp hit to PS00042, Bacterial regulatory FT proteins, crp family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(1257294..1257359) FT /note="Predicted helix-turn-helix motif with score 1980 FT (+5.93 SD) at aa 189-210, sequence MSREEIGNYLGLTLETVSRLFS" FT misc_feature complement(1257528..1257806) FT /note="HMMPfam hit to PF00027, Cyclic nucleotide-binding FT domain" FT CDS 1258261..1260858 FT /transl_table=11 FT /gene="clpB" FT /gene_synonym="htpM" FT /locus_tag="BP1198" FT /product="ATP-dependent protease, ATPase subunit" FT /note="Similar to Escherichia coli clpB protein ClpB or FT HtpM or b2592 SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: FT E(): 2.6e-183, 65.77% id in 862 aa, and to Neisseria FT meningitidis ClpB protein ClpB or Nma1683 TR:Q9JTP9 FT (EMBL:AL162756) (859 aa) fasta scores: E(): 3.1e-197, FT 69.98% id in 863 aa. Also similar to BP2753, 37.133% FT identity (46.014% ungapped) in 886 aa overlap." FT /protein_id="CAE41494.1" FT /translation="MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSG FT AASLLARAGVAVNRVQPAIDSALKGLPQVQGDDNVQVGRELQSVLVRTDKEAARRGDTY FT IASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRGGENVSGAEGESNREALSKY FT TLDLTERARQGKLDPVIGRDDEIRRTIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRI FT VNDEVPETLRGKRVLSLDLAALLAGAKFRGEFEERLKAVLKELAQDDGQNIVFIDELHT FT MAGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVLVGEP FT DVESTIAILRGLQERYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAGAR FT IRMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYE FT EIWKAEKAAVQGTQAIKEEIDRVRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADS FT AEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRV FT VGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHM FT IRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFN FT VLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSQHIQSMAGKPYEVIKEVVWDELKHT FT FRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSG FT FDPVFGARPLKRAIQQQIENPVAKLILEGVFGPRDVVPVDWQDGKFVFTRTLQ" FT misc_feature 1258858..1259442 FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA)" FT misc_feature 1258873..1258896 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1259137..1259175 FT /note="ScanRegExp hit to PS00870, Chaperonins clpA/B FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 1260091..1260114 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1260169..1260225 FT /note="ScanRegExp hit to PS00871, Chaperonins clpA/B FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS join(1261174..1261530,1262565..1264052) FT /pseudo FT /transl_table=11 FT /gene="bapB" FT /locus_tag="BP1200" FT /product="autotransporter (pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481. Identical to the previously sequenced Bordetella FT pertussis BapB protein BapB TR:Q9F4B3 (EMBL:AJ277633) (482 FT aa) fasta scores: E(): 1.5e-131, 100% id in 482 aa, and FT similar to the C-terminal region of the previously FT sequenced Bordetella pertussis tracheal colonization factor FT precursor TcfA2 (BP1201) TR:O86135 (EMBL:AJ009785) (647 aa) FT fasta scores: E(): 1e-81, 71.28% id in 491 aa" FT /db_xref="PSEUDO:CAE41495.1" FT repeat_region 1261513..1261544 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1261513..1262565 FT CDS 1261615..1262565 FT /transl_table=11 FT /locus_tag="BP1199" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41496.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 1261873..1261938 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1261996..1262529 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1262534..1262565) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 1264436..1266379 FT /transl_table=11 FT /gene="tcfA" FT /locus_tag="BP1201" FT /product="tracheal colonization factor precursor" FT /note="Identical to the previously sequenced Bordetella FT pertussis tracheal colonization factor precursor Tcfa2 FT TR:O86135 (EMBL:AJ009785) (647 aa) fasta scores: E(): FT 1.7e-171, 99.84% id in 647 aa" FT /protein_id="CAE41497.1" FT /translation="MHIYGNMNRATPCRGAVRALALALLGAGMWTLSPPSAWALKLPSL FT LTDDELKLVLPTGMSLEDFKRSLQESAPSALATPPSSSPPVAKPGPGSVAEAPSGSGHK FT DNPSPPVVGVGPGMAESSGGHNPGVGGGTHENGLPGIGKVGGSAPGPDTSTGSGPDAGM FT ASGAGSTSPGASGGAGKDAMPPSEGERPDSGMSDSGRGGESSAGGLNPDGAGKPPREEG FT EPGSKSPADGGQDGPPPPRDGGDADPQPPRDDGNGEQQPPKGGGDEGQRPPPAAGNGGN FT GGNGNAQLPERGDDAGPKPPEGEGGDEGPQPPQGGGEQDAPEVPPVAPAPPAGNGVYDP FT GTHTLTTPASAAVSLASSSHGVWQAEMNALSKRMGELRLTPVAGGVWGRAFGRRQDVDN FT RVSREFRQTISGFELGADTALPVADGRWHVGAVAGYTNGRIKFDRGGTGDDDSVHVGAY FT ATYIEDGGFYMDGIVRVSRIRHAFKVDDAKGRRVRGQYRGNGVGASLELGKRFTWPGAW FT YVEPQLEVAAFHAQGADYTASNGLRIKDDGTNSMLGRLGLHVGRQFDLGDGRVVQPYMK FT LSWVQEFDGKGTVRTNDIRHKVRLDGGRTELAVGVASQLGKHGSLFGSYEYAKGSRQTM FT PWTFHVGYRYAW" FT misc_feature 1264436..1264552 FT /note="Signal peptide predicted for BP1201 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.986) with cleavage site FT probability 0.982 between residues 39 and 40" FT CDS complement(1266476..1267171) FT /transl_table=11 FT /locus_tag="BP1202" FT /product="TetR-family transcriptional regulator" FT /note="Similar to Rhizobium loti transcriptional regulator FT Mll3386 TR:Q98GC7 (EMBL:AP003001) (219 aa) fasta scores: FT E(): 2.1e-34, 50.73% id in 205 aa, and to Mycobacterium FT tuberculosis CDC1551 transcriptional regulator, TetR family FT Mt3262 TR:AAK47601 (EMBL:AE007140) (200 aa) fasta scores: FT E(): 4.3e-05, 30.23% id in 172 aa" FT /protein_id="CAE41498.1" FT /translation="MPLIAPASPQAALSGEPPHGPRARMRRTLLDTAQRLMVQGITPSV FT AELAEAAAVSRATAYRYFPSQSALIAAVVDQSLGPILQWQPQSDDAAERIDELLRFAYP FT RLQQHEASLRAAIMVSLQQYAEASAGQNPDTPRLVRGHRVDTLKHVTAPLASQLEPAAH FT QRVIRALSLLYGTEVFLILKDIWHLELDDIVDVVTWAAQAIVRQAQQEAGIAPTSGKTP FT AKRKRNAPG" FT misc_feature complement(1266953..1267087) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT misc_feature complement(1266980..1267045) FT /note="Predicted helix-turn-helix motif with score 1464 FT (+4.17 SD) at aa 83-104, sequence PSVAELAEAAAVSRATAYRYFP" FT CDS 1267329..1268537 FT /transl_table=11 FT /locus_tag="BP1203" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mll9388 protein Mll9388 FT TR:Q981G1 (EMBL:AP003016) (408 aa) fasta scores: E(): FT 5.5e-89, 63.03% id in 395 aa, and to Rhizobium sp FT hypothetical protein Y4ou precursor Y4ou SW:Y4OU_RHISN FT (P55606) (402 aa) fasta scores: E(): 7.6e-88, 62.02% id in FT 395 aa" FT /protein_id="CAE41499.1" FT /translation="MQEIEQRIYLAATYDTKGEEAEYLRQLLRRDGVMVVTVDVATSGQ FT GSPAMVSAQEVAACHPQGAQAVFTGERGSAIVAMALAFERYLAGQRDVGAVLGIGGSGG FT TALVTPAMRALPVGVPKLMVSTMASGNVAPYVGPSDIAMMYSVTDVAGLNRISRRVLAN FT AAGAIAGAFRQARQPIADDGRPAVGITMFGVTTPCVQHVTAALHDRYDCLVFHATGTGG FT QSMEKLADSRLLAGVLDLTTTEVCDFLFGGVLACTDDRFGAIARSGVPYVGSCGALDMV FT NFGALDTVPAACRERLLYPHNPQVTLMRTTAQENARQGAWIAERLNRCEGQVRFLIPEG FT GVSALDAPGQAFHDEAADAALFQALYDHVRQTDKRRLVRVPCHINDPLFARAAVEQFHE FT ISQ" FT misc_feature 1267956..1267976 FT /note="ScanRegExp hit to PS00290, Immunoglobulins and major FT histocompatibility complex proteins signature." FT CDS 1268547..1269377 FT /transl_table=11 FT /locus_tag="BP1204" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1332 TR:AAK65386 (EMBL:AE007260) (280 aa) fasta FT scores: E(): 9.4e-70, 69.09% id in 275 aa, and to Rhizobium FT loti Mll9387 protein Mll9387 TR:Q981G2 (EMBL:AP003016) (285 FT aa) fasta scores: E(): 1.1e-69, 69.34% id in 274 aa" FT /protein_id="CAE41500.1" FT /translation="MPRFERSALLDKFQDMVRRRQPIVGGGAGTGLSAKCEEAGGIDLI FT VIYNSGRYRMAGRGSLAGLLAYGNANDIVLDMAREVLPVVRHTPVLAGVNGTDPFCNFD FT AFLDELARVGFSGVQNFPTVGLIDGTFRANLEETGMGYGLEVEMIRLAHAKGLLTTPYV FT FDPDQARAMTAAGADIVVAHMGLTTGGNIGAETALSLDDCVARIDAIAAAALAERGDVI FT VLCHGGPIATPQDAAHVLQRCRHCHGFYGASSMERLPVEQALTATTRAFKQLSF" FT misc_feature 1269273..1269290 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT CDS 1269445..1269897 FT /transl_table=11 FT /locus_tag="BP1205" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr1698 protein Mlr1698 FT TR:Q98K03 (EMBL:AP002998) (147 aa) fasta scores: E(): FT 5.6e-16, 38.29% id in 141 aa, and to Mycobacterium FT tuberculosis hypothetical 16.8 kDa protein Rv1919c or FT Mtv050.03C TR:O53961 (EMBL:AL022020) (154 aa) fasta scores: FT E(): 0.046, 29.41% id in 136 aa" FT /protein_id="CAE41501.1" FT /translation="MSHLVYVSRVVAAPIERVWPHLRDFNGLSAWHPGVADSRLEEGGR FT DDAPGTVRFLSLNPSGYVRERLLMLDDAGRSLRYAIIETDLPMRDYVAGVDLCPVTEGG FT GTFAQWWADFDVVAGANRDEVARLVGEGVFAAGLQALDQYLRDRQG" FT CDS complement(1269905..1270867) FT /transl_table=11 FT /locus_tag="BP1206" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Salmonella typhimurium OsmT protein FT TR:CAC44465 (EMBL:AJ313506) (308 aa) fasta scores: E(): FT 3.8e-19, 31.66% id in 300 aa, and to Agrobacterium FT tumefaciens Agr_l_1195p TR:AAK89175 (EMBL:AE008258) (298 FT aa) fasta scores: E(): 5.7e-25, 34.25% id in 289 aa" FT /protein_id="CAE41502.1" FT /translation="MNRLPKHVTLKHLTAFVAVAQESSFTHAARRLFQTQSSVTTLVRQ FT LETALGTQLFARTSRKVLLSAAGQDFLPRVMRLLADFDGVIEDVVRYGALERGRVSVAA FT APSAITQLIAPAAADFARRHPAIRLYLRDDNSGRIQRQVAAQEVDFGLTSRWADAPGLA FT FDPLLEDRFGVLYRADDTSIQPGRDGHVRWERLSHRKLVGVVDETGIMALLRARADLPI FT EAAAPFYEASSTTSQAALVKAGLGVALLPALAVERVREPGLAFALLARPTVMRTLCIIG FT HQERALSPAAAALIDTLRAYVRQATLPAGCRPAGRNSRA" FT misc_feature complement(1270412..1270840) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(1270706..1270798) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(1270736..1270801) FT /note="Predicted helix-turn-helix motif with score 1069 FT (+2.83 SD) at aa 23-44, sequence SSFTHAARRLFQTQSSVTTLVR" FT misc_feature complement(1270784..1270867) FT /note="Signal peptide predicted for BP1206 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.801) with cleavage site FT probability 0.764 between residues 28 and 29" FT CDS 1270972..1272414 FT /transl_table=11 FT /locus_tag="BP1207" FT /product="N-acyl-D-glutamate deacylase" FT /EC_number="3.5.1.82" FT /note="Similar to Alcaligenes xylosoxydans xylosoxydans FT N-acyl-D-glutamate deacylase SW:NDED_ALCXX (P94211) (488 FT aa) fasta scores: E(): 1.9e-144, 78.78% id in 476 aa, and FT to Alcaligenes faecalis D-aminoacylase TR:Q9AGH8 FT (EMBL:AF332548) (484 aa) fasta scores: E(): 2e-73, 48.13% FT id in 482 aa" FT /protein_id="CAE41503.1" FT /translation="MQNAEKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAH FT PARHAWDASGKIVAPGFIDVHGHDDLMFVEKPDLRWKTSQGITTVVVGNCGVSAAPAPL FT PGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQAAPTA FT AEQQAMQDMLQAALEAGAVGFSTGLAYQPGAAAQAAELEGLARVAAERRRLHTSHIRDE FT ADGVEAAVEEVLAIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDI FT YPYPGSSTILIPERAETIDDIRITWSTPHPECSSEYLADIAARWGCDKTTAARRLAPAG FT AIYFAMDEDEVKRIFQHPCCMVGSDGLPNDARPHPRLWGSFTRVLGRYVREARLMTLEQ FT AVARMTALPARVFGFAERGVLQPGAWADVVVFDPDTVADRATWDEPTLASVGIAGVLVN FT GAEVFPQPPADGRPGQVLRAGA" FT CDS 1272465..1273421 FT /transl_table=11 FT /locus_tag="BP1208" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 4.6e-47, 44.98% id in 309 aa, and to Comamonas FT testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 FT aa) fasta scores: E(): 6.7e-42, 41.45% id in 316 aa" FT /protein_id="CAE41504.1" FT /translation="MRKTLAVLALMAALPAAHADFPERPITLIVPFPAGGPTDIVGRVA FT AAKAGEILGQQIVVENRTGAAGTIGITATARAKPDGYTLGLATVSTHGTAPHLFPNLAY FT DPIKDFTPVSNLVTSPNILSVNPSYPAADLTAFVAHVRANPGRDGYANAGAGGVNDLGM FT IWFLQLIGGKMTSIAYRGSAPALTDAVSGVVPVIFDNFPSSLPYIKSGHLRPLAITGAA FT RNPRLPEVPTFAEQGYRDYDVTAWYGVVAPAGLPDAVRDKLAQAFAQAVRDPATAAKME FT ETSAFPLGNTPAEFAAQIQAEQARWKTVIEKADIKLQ" FT misc_feature 1272465..1272521 FT /note="Signal peptide predicted for BP1208 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 19 and 20" FT CDS complement(1273437..1274816) FT /transl_table=11 FT /locus_tag="BP1209" FT /product="probable oxidoreductase" FT /note="Similar to Escherichia coli sulfite reductase FT [NADPH] flavoprotein alpha-component CysJ or B2764 FT SW:CYSJ_ECOLI (P38038) (598 aa) fasta scores: E(): 7.2e-14, FT 27.01% id in 596 aa, and to Caulobacter crescentus sulfite FT reductase Cc3063 TR:Q9A3Y7 (EMBL:AE005969) (504 aa) fasta FT scores: E(): 1.3e-40, 51.88% id in 503 aa" FT /protein_id="CAE41505.1" FT /translation="MPLPPHPRLLAAAGLVLAWLLLYLWAWRQARMRAASQARALRALE FT ARPGPQTVLVAYASQTGFAAELAEHTAAALASGGLQARVAELGQIDAATLGHYARALFI FT VSTYGEGDPPDAAAPFADTAMQSGAGLGALRYAVLALGDSSYAHFCGFGHRLDDWLRAN FT GAAPLFDLVEVDAGDAAALRHWQHHLGVVTGCTDLPDWQAPAYQAWRLARRTLLNPGSQ FT GAPCYFIELTPPHSTAPQWQAGDIAEIGPRDAPDSPLHAHREYSIASLPADGAVHLLVR FT QMRTADGALGLGSGWLTHTAQTGQAIDLRVRANRNFHPPADARPLILVGNGTGLAGLRA FT LIKARRSAGHGRNWLVFGERSAAHDWFCRDELEQWRGEGWLEYVDAVFSRDAPQRRYVQ FT DLLRDRAERVRDWIREGAAVYVCGSLHGMAEGVHQALADILGPAQLQALQHAGRYRRDV FT Y" FT misc_feature complement(1273512..1273850) FT /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding FT domain" FT misc_feature complement(1274736..1274789) FT /note="1 probable transmembrane helix predicted for BP1209 FT by TMHMM2.0 at aa 10-28" FT misc_feature complement(1274739..1274819) FT /note="Signal peptide predicted for BP1209 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.818) with cleavage site FT probability 0.530 between residues 27 and 28" FT CDS complement(1274816..1275832) FT /transl_table=11 FT /gene="apbE" FT /locus_tag="BP1210" FT /product="thiamine biosynthesis lipoprotein precursor" FT /note="Similar to Salmonella typhimurium thiamine FT biosynthesis lipoprotein ApbE precursor ApbE SW:APBE_SALTY FT (P41780) (350 aa) fasta scores: E(): 3.9e-27, 34.15% id in FT 325 aa, and to Caulobacter crescentus thiamine biosynthesis FT protein ApbE, putative Cc3062 TR:Q9A3Y8 (EMBL:AE005969) FT (342 aa) fasta scores: E(): 1.4e-49, 47.02% id in 336 aa" FT /protein_id="CAE41506.1" FT /translation="MSMARPPSYAPPLAARLPSAPPRLSGEPVALAGASMGTTWSARLA FT LPPGVTRQQAQAAIAAALDEVVAQMSTWEAGSDISRFNRAATGWQALPEALFHVLSHAL FT DLADASGGAYDPTIGALVDAWGFGAGPRVHEPPAAAAIAAALADCGHGRVRLDAQARRA FT WQPGGVRLDLSSIAKGYGVDRAALALRALGVTACLVEVGGELRAHGVRPDGLPWRVAVE FT VPDASGAHALAVPLRDQSIATSGDYRRYIEQAGRRYAHTLAPRTGKPLDNDLASVTVIH FT PECMLADGLATALGVLGAAAGADYAARHDLAALFILRGAAGHEVRATPAFAALLDRP" FT misc_feature complement(1274870..1275805) FT /note="HMMPfam hit to PF02424, ApbE family" FT CDS complement(1275837..1276637) FT /transl_table=11 FT /locus_tag="BP1211" FT /product="putative exported protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf0595 TR:Q9PFR2 (EMBL:AE003905) (267 aa) fasta scores: FT E(): 4e-46, 50.76% id in 260 aa, and to Caulobacter FT crescentus hypothetical protein Cc3061 TR:Q9A3Y9 FT (EMBL:AE005969) (247 aa) fasta scores: E(): 7.2e-34, 49.5% FT id in 200 aa" FT /protein_id="CAE41507.1" FT /translation="MKAVAKLAAALTLALPLAAQAHDVWVLPSSTVLSGVDSWITVDAA FT VGNDKFYFNHAPLRLDGLDIIAPDGSAAQAENVSRGKIRSTFDLQLKQNGTYRVAVVND FT GVFARWKEDGKPKRYFGKPEGMAAAVPANAQELEVSQSLGRVETFVTAGKPGAIKPVGK FT GLELVAVSHPNDLYSDEPATFQMLLDGKPAAGLEMEIVPNGSRYRDKVEEIELKTNADG FT KFQVKWPQPGMYWVHTEAEDDKVSVPTATKRRMSYALTLEVLRP" FT misc_feature complement(1276575..1276637) FT /note="Signal peptide predicted for BP1211 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 21 and 22" FT CDS complement(1276667..1277182) FT /transl_table=11 FT /locus_tag="BP1212" FT /product="putative exported protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc3060 TR:Q9A3Z0 (EMBL:AE005969) (171 aa) fasta FT scores: E(): 1.3e-34, 55.23% id in 172 aa, and to Xylella FT fastidiosa hypothetical protein Xf0596 TR:Q9PFR1 FT (EMBL:AE003905) (174 aa) fasta scores: E(): 1.9e-33, 52.63% FT id in 171 aa" FT /protein_id="CAE41508.1" FT /translation="MRKLLLSVLLAGLVARTAYAADLGLSVEIPRLDVAEYHRPYVAIW FT IEQADQSVAGDLAVWYDVAKKNNEGTEWLKDMRQWWRRSGRNQQFPVDGVSGATRPAGK FT HALSFAGTAKPLADLKPGKYAVVVEAAREVGGRELVRVPFDWPPQQAQQLTARGEHELG FT AIAVDLKP" FT misc_feature complement(1277123..1277182) FT /note="Signal peptide predicted for BP1212 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 20 and 21" FT CDS complement(1277205..1277834) FT /transl_table=11 FT /locus_tag="BP1213" FT /product="putative membrane protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc3059 TR:Q9A3Z1 (EMBL:AE005969) (209 aa) fasta FT scores: E(): 2.7e-43, 55.92% id in 211 aa, and to Xylella FT fastidiosa hypothetical protein Xf0597 TR:Q9PFR0 FT (EMBL:AE003905) (218 aa) fasta scores: E(): 7.7e-45, 56.73% FT id in 208 aa" FT /protein_id="CAE41509.1" FT /translation="MDGKTSSKRRAYWLKTLHQWHWISSALCLLGMLLFAVTGLTLNNA FT SHIESRARVDTRHLELPAPLRAELAAAAPARPALPPALLEWLDRELDVDARGAAAKPEW FT SPDELYVSLPRPGGDAWLSIDLQSGELEYERTDRGWIAYLNDLHKGRHTGLAWSWFLDI FT FAVACLVFSLTGLVLLKMHAGNRAATWPMVGLGVVIPVVLALLFIH" FT misc_feature complement(join(1277211..1277276,1277298..1277363, FT 1277709..1277774)) FT /note="3 probable transmembrane helices predicted for FT BP1213 by TMHMM2.0 at aa 20-42, 157-179 and 186-208" FT misc_feature complement(1277727..1277834) FT /note="Signal peptide predicted for BP1213 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.988) with cleavage site FT probability 0.364 between residues 36 and 37" FT CDS 1277981..1278928 FT /transl_table=11 FT /gene="nodI" FT /locus_tag="BP1214" FT /product="ABC, transporter, ATP-binding protein" FT /note="Similar to Rhizobium loti nodulation ATP-binding FT protein I NodI or Mlr6164 SW:NODI_RHILO (P23703) (340 aa) FT fasta scores: E(): 3.7e-62, 63.14% id in 312 aa, and to FT Rhizobium tropici NodI TR:AAL02416 (EMBL:AY029295) (304 aa) FT fasta scores: E(): 6.2e-63, 63.33% id in 300 aa" FT /protein_id="CAE41510.1" FT /translation="MSSNPVSASCAPVLQVHGLTKRYGERVIVDGLSFALRRGECYGLL FT GPNGAGKTTTLRALLGLTPFDDGAVEVLGHAVPAQARQARARLGVVPQLDNLDPDFTVA FT ENLLVFGRYFGLSDAQVRARLPQLLAFAALAAKADARIGELSGGMKRRLTLARALINDP FT DLIIMDEPTTGLDPQARHLIWERLKALLARGKTILLTTHFMDEAERLCHRLGVIDHGRL FT ITEGAPRALIERCLEPQVVEVYGDDLHAWLAAHRAALPARVEVSGETAFCHTDDATPVV FT QALQGWPDLRYLHRPANLEDLFLRLTGRGMREDA" FT misc_feature 1278095..1278640 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 1278116..1278139 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1278413..1278457 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 1278545..1278568 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 1278925..1279710 FT /transl_table=11 FT /gene="nodJ" FT /locus_tag="BP1215" FT /product="ABC transporter, permease protein" FT /note="Similar to Rhizobium sp nodulation protein J NodJ or FT Y4hE SW:NODJ_RHISN (P55475) (262 aa) fasta scores: E(): FT 2.2e-39, 42.3% id in 260 aa, and to Bradyrhizobium spWM9 FT probable nodulation ABC transporter permease nodJ TR:Q9AQ19 FT (EMBL:AF222753) (261 aa) fasta scores: E(): 3.8e-39, 44.7% FT id in 255 aa" FT /protein_id="CAE41511.1" FT /translation="MSAGAWGWPPLTRRCVAVLRRNFLVWRKTALTTVLGDVLDPVVAL FT LALGFGLGALLPGIEGVPYVTFLSAGSMCVGALYGATFEATYNAFSRLHVQRTWDAMLS FT TPLDLDDVVWAEILWAAAKALKSGIAILLVVVALDIARAPTLLWVPPVLALAGLAFASM FT ALVVSALARGYEFFMYYFTLGVTPMVFLSGVFFPASQLPAALAGPLQWLPVAPAVNLIR FT PLTLGQVPHAWWADVAQLAVTAALGIWLVAVLMRRRLLR" FT misc_feature 1278982..1279701 FT /note="HMMPfam hit to PF01061, ABC-2 type transporter" FT misc_feature join(1279024..1279092,1279105..1279173,1279363..1279431, FT 1279450..1279518,1279618..1279686) FT /note="5 probable transmembrane helices predicted for FT BP1215 by TMHMM2.0 at aa 34-56, 61-83, 147-169, 176-198 and FT 232-254" FT CDS 1279799..1280359 FT /transl_table=11 FT /locus_tag="BP1216" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5409 TR:Q9HTF5 (EMBL:AE004953) (186 aa) fasta FT scores: E(): 1.1e-33, 55.3% id in 179 aa, and to Rhizobium FT loti Mll6732 protein Mll6732 TR:Q988I2 (EMBL:AP003010) (200 FT aa) fasta scores: E(): 0.00082, 25.59% id in 168 aa" FT /protein_id="CAE41512.1" FT /translation="MVTDAVLNHAGREWGWVALRGVVAVLFGLMAVLMPGITLSALVLV FT WGAFALADGIFALVAGWRIRDQDKPLWPLILVGLTGIAAGIATFAWPGLTALVLLYIIA FT FWAVIGGVFQIAAAIRFRKDIENEWLHGLSGALSIVFGALLLFQPGAGALALVWVIGVY FT AVLFGVLLLALAFRLKNHVATPA" FT misc_feature join(1279844..1279912,1279922..1279990,1280009..1280068, FT 1280078..1280146,1280183..1280251,1280264..1280332) FT /note="6 probable transmembrane helices predicted for FT BP1216 by TMHMM2.0 at aa 16-38, 42-64, 71-90, 94-116, FT 129-151 and 156-178" FT CDS 1280369..1280755 FT /transl_table=11 FT /locus_tag="BP1217" FT /product="putative membrane protein" FT /note="Similar to Escherichia coli protein CrcB or B0624 FT SW:CRCB_ECOLI (P37002) (127 aa) fasta scores: E(): 1.6e-10, FT 42.6% id in 115 aa, and to Pseudomonas syringae FT pvmaculicola hypothetical 13.3 kDa protein TR:AAK49548 FT (EMBL:AF359557) (127 aa) fasta scores: E(): 6.5e-17, 49.18% FT id in 122 aa" FT /protein_id="CAE41513.1" FT /translation="MLTYAPLNFIAIGIGATLGAWLRWVLGLRLNGAGWPWGTLTANLV FT GGYLIGVMVALIASHPEWPAWIRLAAVTGFLGGLTTFSTFSAETVDMLERGVYATAAAY FT AGASLAGSLAMTGLGLATVRLLLR" FT misc_feature join(1280387..1280443,1280471..1280539,1280558..1280626, FT 1280669..1280737) FT /note="4 probable transmembrane helices predicted for FT BP1217 by TMHMM2.0 at aa 7-25, 35-57, 64-86 and 101-123" FT misc_feature 1280393..1280737 FT /note="HMMPfam hit to PF02537, CrcB-like protein" FT CDS complement(1280778..1282109) FT /transl_table=11 FT /locus_tag="BP1218" FT /product="putative exported protein" FT /note="Similar to Zymomonas mobilis shc hpnE TR:Q56996 FT (EMBL:X80766) (414 aa) fasta scores: E(): 4.8e-06, 25.87% FT id in 456 aa, and to Neisseria meningitidis putative FT oxidoreductase Nma1338 TR:Q9JUF6 (EMBL:AL162755) (437 aa) FT fasta scores: E(): 5.1e-33, 38.92% id in 447 aa" FT /protein_id="CAE41514.1" FT /translation="MKVAVIGAGWAGLAASVALREADAKVTVFEAGRTPGGRARRVVHP FT EFGDDLDNGQHILLGAYGETLALMRRLGRNPDALLMRRPLRLASLDGGFRLSAPPLPAP FT LHAAAALLLARGLPWRSRVAAVRLMHYLRQMQWQAPRDWTVTQLLDHTRQPAGIRQSVW FT APLCLAALNTPPAQASALLYAHILRDSLTGHRRNSDLLLPYADLSALWPDVAARQATMR FT YGNTVRRLTPQTHSVEVNGERFDAAVLAVSPQVAARLLEHALAEQGSGGLLRALQAFDY FT EPIATLNLRLAGPWPLPEPMMMLREEPARGFHGQWLFDRSRLTGRGERGELAVVVSAAR FT AVAAADREQAIAALTRQVAEQARRHPARLAPMPAVEIAELFVEKRATFAAMPGLARPLN FT STPWRSLALAGDWTDTGYPGVLEGAVRSGLQAARVVLGGAATPD" FT misc_feature complement(1282050..1282109) FT /note="Signal peptide predicted for BP1218 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.851) with cleavage site FT probability 0.458 between residues 20 and 21" FT CDS complement(1282106..1282969) FT /transl_table=11 FT /locus_tag="BP1219" FT /product="putative phytoene synthase" FT /note="Similar to Narcissus pseudonarcissus phytoene FT synthase precursor Psy SW:PSY_NARPS (P53797) (423 aa) fasta FT scores: E(): 8.1e-29, 32.72% id in 275 aa, and to Neisseria FT meningitidis phytoene synthase, putative Nmb1168 or Nmb1130 FT TR:Q9JRU9 (EMBL:AE002465) (290 aa) fasta scores: E(): FT 3.7e-54, 51.43% id in 278 aa" FT /protein_id="CAE41515.1" FT /translation="MTPDEYCQEKAAKSGSSFYYSFLFLPPARRRAITALYAFCREVDD FT VVDECSDPSLARVKLAWWRTQVDQMVDGKPDHPVTRALQPHLADCNITRERLLAVIDGM FT EMDLDQTRYLDWPGLRKYCWHVAGVVGELSAGVFGYQDARTLDYAGKLGLAFQLTNIIR FT DVGDDARRGRIYLPVNELQQFEVKAADILNGVHSERFSALMRFQAERTRGLYREAMQAL FT PETDRRAQRPGLMMAAIYHALLDEIERDDWQVLHQRISLTPVRKLWLAWKTWVSGGAPL FT VRRLAR" FT misc_feature complement(1282133..1282939) FT /note="HMMPfam hit to PF00494, Squalene/phytoene synthase" FT misc_feature complement(1282439..1282516) FT /note="ScanRegExp hit to PS01045, Squalene and phytoene FT synthases signature 2. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature complement(1282559..1282606) FT /note="ScanRegExp hit to PS01044, Squalene and phytoene FT synthases signature 1." FT CDS complement(1282971..1283801) FT /transl_table=11 FT /locus_tag="BP1220" FT /product="putative phytoene synthase" FT /note="Similar to Streptomyces griseus phytoene synthase FT CrtB or CrtI SW:CRTB_STRGR (P54977) (342 aa) fasta scores: FT E(): 2.4e-14, 34.57% id in 269 aa, and to Neisseria FT meningitidis putative transferase Nma1721 TR:Q9JTL7 FT (EMBL:AL162756) (276 aa) fasta scores: E(): 1.9e-49, 50.54% FT id in 275 aa" FT /protein_id="CAE41516.1" FT /translation="MAIDHYENFPVASLLLPRRLRGAVTDIYRFARAADDIADEGAAED FT AERLRQLAAFRAELHRIGAEPGTLAVPASADLAPIFTPLAATIARHQLPITPFFDLLSA FT FEQDISVKRYESHDDLLDYCRRSANPVGRLMLHLYGAVDEANLRDADAICTGLQLVNFW FT QDVRIDWRKQRVYLPEEDLRRHGVSRDDLAACRLTPQWRELMAFEVQRTRALLHSGAAL FT PRRLPGRIGLELRLVVQGGLRILQRIEDAGYDVFMNRPELGAKDWAVMLWRAFT" FT misc_feature complement(1283139..1283771) FT /note="HMMPfam hit to PF00494, Squalene/phytoene synthase" FT CDS 1283930..1285057 FT /transl_table=11 FT /gene="dadX" FT /gene_synonym="dadB" FT /gene_synonym="alnB" FT /locus_tag="BP1221" FT /product="alanine racemase, catabolic" FT /EC_number="5.1.1.1" FT /note="Similar to Escherichia coli alanine racemase, FT catabolic DadX or DadB or AlnB or B1190 SW:ALR2_ECOLI FT (P29012) (356 aa) fasta scores: E(): 7.2e-61, 51.88% id in FT 372 aa, and to Salmonella typhimurium alanine racemase, FT catabolic DadB SW:ALR2_SALTY (P06191) (356 aa) fasta FT scores: E(): 1.3e-62, 52.81% id in 373 aa. Also similar to FT BP2228, 41.398% identity (42.659% ungapped) in 372 aa FT overlap." FT /protein_id="CAE41517.1" FT /translation="MPRPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVIKA FT NAYGHGIEQAVAGFSAAQGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLEIVDRYH FT LATTVHTREQFDMLAHARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEYGVV FT GGIGKMTHFACADGPQGVTQQMNVFNGATAHLAGATSVCNSAATLRYADLAVGHDGQTH FT WVRPGICLYGASPFADAQAGAFGLIPAMTLRSELIAIQDIPAGAAVGYGAIFRADRPMR FT IGVVACGYADGYPRHAGTGTPLTVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVVLW FT GEDGPSVDEVAEAAGTIGYELLCALAPRVPVRHEG" FT misc_feature 1284041..1285042 FT /note="HMMPfam hit to PF00842, Alanine racemase" FT misc_feature 1284050..1284082 FT /note="ScanRegExp hit to PS00395, Alanine racemase FT pyridoxal-phosphate attachment site." FT CDS 1285209..1285925 FT /transl_table=11 FT /locus_tag="BP1222" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Streptococcus agalactiae CylG TR:Q9X429 FT (EMBL:AF093787) (240 aa) fasta scores: E(): 1e-20, 34.16% FT id in 240 aa, and to Pseudomonas aeruginosa probable FT short-chain dehydrogenase Pa4162 TR:Q9HWL9 (EMBL:AE004832) FT (238 aa) fasta scores: E(): 2.6e-52, 61.53% id in 234 aa" FT /protein_id="CAE41518.1" FT /translation="MKDKCVLVTGATKGIGWALTQRLTDLGCHVVGIARNTADVDFPGY FT LYACDLADAGRTEEVLREIRDKFPVDAVVNNVGIVAPQALGEIDLATLYSVLDLNVRVA FT VQVTQTFVESMKVRRSGRIVNICSRAILGAYDRTSYSAAKSALVGCTRTWALELAEYGV FT TVNAVAPGPVETELFRRGHPAGSDAEKRAQASIPMKRFGTPAEVAAAVAFLLSDDAGFI FT TGQVLGVDGGGSLGGH" FT misc_feature 1285218..1285736 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 1285803..1285895 FT /note="HMMPfam hit to PF00678," FT CDS complement(1285939..1286631) FT /transl_table=11 FT /locus_tag="BP1223" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE41519.1" FT /translation="MNPHLPPDDDDRDLRALYRELPRHEPDIMLDASIREQAQRAAEAD FT RRARRPRATWHPAWAVAACVVAVSALFVFTDLEQYALQPAAEVELQAEQEAAQATRDAV FT PEPPAPDPALAAPPPLGALAPEAARGAAAESSAQDAAPARRGYMPQRAAPAVRAEKQQQ FT ENLAASARQRDDPAYAQRVERIRALVREGKPQEAAAEVLAWRRAAPGLALPPDLEQLAP FT ADGGTPGQ" FT misc_feature complement(1286410..1286466) FT /note="1 probable transmembrane helix predicted for BP1223 FT by TMHMM2.0 at aa 55-74" FT repeat_region 1286635..1286666 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1286635..1287687 FT CDS 1286737..1287687 FT /transl_table=11 FT /locus_tag="BP1224" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41520.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 1286995..1287060 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1287118..1287651 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1287656..1287687) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1287684..1288262) FT /transl_table=11 FT /locus_tag="BP1225" FT /product="putative Ecf-type RNA polymerase sigma factor" FT /note="Similar to Pseudomonas aeruginosa putative RNA FT polymerase sigma factor Pa2896 TR:Q9HZV1 (EMBL:AE004716) FT (194 aa) fasta scores: E(): 8.5e-19, 43.15% id in 190 aa, FT and to Rhizobium loti RNA polymerase Ecf-type sigma factor FT Mll8140 TR:Q983W6 (EMBL:AP003013) (208 aa) fasta scores: FT E(): 1.3e-10, 33.33% id in 171 aa" FT /protein_id="CAE41521.1" FT /translation="MDTASAADEALMLAYGAEGDMDAFDALYARHRAGLYRYILRSARN FT AAQADDIFQETWSRVIDARARYRPQARFTTWLLQIAHNLLVDAHRRQPAPVAPEQAEAA FT LASVPAAEHEQPEARLSEFQQRRRLQLAIERLPDEQRLAMLLRLEHDLDVEEIAQVTGV FT SRETVKSRLRYATRRIREELSSESAPRSP" FT misc_feature complement(1287744..1287809) FT /note="Predicted helix-turn-helix motif with score 1360 FT (+3.82 SD) at aa 176-197, sequence LDVEEIAQVTGVSRETVKSRLR" FT misc_feature complement(1287987..1288154) FT /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF FT subfamily)" FT CDS complement(join(1288340..1290031,1290031..1290054)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1226" FT /product="putative exported protein (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 8. The frameshift occurs within a FT polymeric tract of (C)5.Similar to Escherichia coli FT hypothetical protein YfbK or b2270 SWALL:YFBK_ECOLI FT (SWALL:P76481) (575 aa) fasta scores: E(): 8.8e-71, 45.02% FT id in 573 aa, and to Xanthomonas campestris hypothetical FT protein Xcc2915 SWALL:AAM42187 (EMBL:AE012405) (618 aa) FT fasta scores: E(): 9.3e-78, 51.05% id in 568 aa" FT /db_xref="PSEUDO:CAE41522.1" FT misc_feature complement(1288904..1289428) FT /note="HMMPfam hit to PF00092, von Willebrand factor type A FT domain" FT variation complement(1290028..1290032) FT /note="(C)5 in pertussis; (C)6 in parapertussis and FT bronchiseptica" FT CDS 1290181..1291542 FT /transl_table=11 FT /gene="radA" FT /gene_synonym="sms" FT /locus_tag="BP1227" FT /product="DNA repair protein" FT /note="Similar to Escherichia coli DNA repair protein RadA FT or Sms or B4389 SW:RADA_ECOLI (P24554) (460 aa) fasta FT scores: E(): 3.3e-91, 57.93% id in 454 aa, and to Neisseria FT meningitidis putative DNA repair protein RadA or Nma0992 FT TR:Q9JV51 (EMBL:AL162754) (459 aa) fasta scores: E(): FT 4.2e-109, 66.08% id in 457 aa" FT /protein_id="CAE41523.1" FT /translation="MAKSRTIYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAAPSAG FT GHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFDRVLGGGLVAGAVVLIGGDPGIGKS FT TLLLQALASLSATTKVLYVTGEESAEQVALRARRLGLQTGNVDLLAEIRLEAIQAAVSE FT QKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGAL FT AGPRVLEHIVDTVLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSAL FT FLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSHAPNPRRLTVGLEGNRLAMLLAVM FT HRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPAGLVAFGEIGLAG FT EIRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR" FT misc_feature 1290469..1290492 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 1291565..1292338 FT /transl_table=11 FT /locus_tag="BP1228" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2847 TR:Q9HZZ6 (EMBL:AE004711) (249 aa) fasta FT scores: E(): 2.8e-32, 45.45% id in 242 aa, and to FT Streptomyces coelicolor hypothetical 26.0 kDa protein FT Sc7a8.24C TR:Q9L2D4 (EMBL:AL137187) (260 aa) fasta scores: FT E(): 8.7e-10, 29.8% id in 255 aa" FT /protein_id="CAE41524.1" FT /translation="MSLLVIAACLASGALIGFMGGALGIGGGLIAIPALGLLLGMPQQL FT AQGTALIMVLPTIMMAVRKYHQHARIDMRVAGAGAAGAVVFTWVGAQLALGIASRTLRL FT SFAVFLFFIALFYVYQTVRKRAAAAPAAPARPAPVLSPPRASVLGVLCGTLGGFFGVGG FT AVLAVPIITSVFRLPQTMAQALALTMVIPGSMIALVTYTWAGQADWWIGVPLAAGSLVF FT VPVGVRLAYRLPERKLRACFAAMLFATVALLIFEA" FT misc_feature 1291565..1291636 FT /note="Signal peptide predicted for BP1228 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.676 between residues 24 and 25" FT misc_feature join(1291601..1291669,1291697..1291750,1291787..1291855, FT 1291868..1291921,1292108..1292176,1292189..1292257, FT 1292276..1292329) FT /note="7 probable transmembrane helices predicted for FT BP1228 by TMHMM2.0 at aa 13-35, 45-62, 75-97, 102-119, FT 182-204, 209-231 and 238-255" FT misc_feature 1291829..1292326 FT /note="HMMPfam hit to PF01925, Domain of unknown function FT DUF81" FT CDS 1292497..1292724 FT /transl_table=11 FT /locus_tag="BP1229" FT /product="putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE41525.1" FT /translation="MTTQSRIAAFLSTSALCLGLAAAPSAYAAQSDAQSGAKSSVKAPS FT GGKHAKSEKHAKSGAHHGAHHAKTGSTSTK" FT misc_feature 1292497..1292562 FT /note="Signal peptide predicted for BP1229 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 28 and 29" FT CDS complement(1292798..1294204) FT /transl_table=11 FT /gene="norM" FT /locus_tag="BP1230" FT /product="multidrug resistance protein" FT /note="Similar to Escherichia coli multidrug resistance FT protein NorM or B1663 SW:NORM_ECOLI (P37340) (457 aa) fasta FT scores: E(): 1.2e-33, 32% id in 450 aa, and to Neisseria FT meningitidis probable multidrug resistance protein NorM or FT Nmb0812 SW:NORM_NEIMB (Q9K015) (459 aa) fasta scores: E(): FT 3e-46, 35.21% id in 443 aa" FT /protein_id="CAE41526.1" FT /translation="MTPAAAPSPGFGATMRDIARQAWPVLISQWAGISFGVLDTAMTGH FT ASPQDLAAMSLSVSVYITVFVGLMGVVHALIPILAQHFGAGQQREVGSTWGQGVWLALG FT LSVVGAILMLFPDAWLSLSGDVDPAVRDRVAAYLRALVLALPATLVFRTIYALGTAVSR FT PKVVMSINLAAVFVKAFCNWVLIYGKFGLPALGAVGAGLATAISGWLSLAAGLWIITHD FT RYYRRFRLRVGRPDWRALKELLRLGLPMGGSYLVEVSAFTFMALLVAREGTYVSGGHQI FT MSNLAALCYMMPMALGVATAALTAQAIGAGRPDLAHRTGMAGLALGLLGAALTAAVLLV FT GRPLIIAAYTDDLEVAAVAASLLAIIPLFHLCDSMQCINSYLLRAHKVAVMPLVLQTVA FT LGGVGLLGGWWLGFGPGRGGLDPLRTALMPGSPAGAGTMWLMAMAGLGLSAVLLHYWYR FT RIARLALARG" FT misc_feature complement(join(1292834..1292899,1292960..1293025, FT 1293089..1293139,1293170..1293235,1293296..1293361, FT 1293407..1293472,1293548..1293613,1293644..1293694, FT 1293734..1293799,1293860..1293925,1293965..1294030, FT 1294076..1294141)) FT /note="12 probable transmembrane helices predicted for FT BP1230 by TMHMM2.0 at aa 21-43, 58-80, 93-115, 135-157, FT 170-187, 197-219, 244-266, 281-303, 323-345, 355-372, FT 393-415 and 435-457" FT misc_feature complement(1292975..1293463) FT /note="HMMPfam hit to PF01554, Uncharacterized membrane FT protein family UPF0013" FT misc_feature complement(1293653..1294138) FT /note="HMMPfam hit to PF01554, Uncharacterized membrane FT protein family UPF0013" FT misc_feature complement(1293995..1294012) FT /note="ScanRegExp hit to PS00267, Tachykinin family FT signature." FT CDS complement(1294201..1295937) FT /transl_table=11 FT /locus_tag="BP1231" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis putative inner FT membrane protein Nma0497 TR:Q9JW86 (EMBL:AL162753) (558 aa) FT fasta scores: E(): 2.5e-18, 26.04% id in 599 aa, and to FT Xylella fastidiosa hypothetical protein Xf0929 TR:Q9PEU9 FT (EMBL:AE003932) (583 aa) fasta scores: E(): 2.8e-06, 27.3% FT id in 498 aa" FT /protein_id="CAE41527.1" FT /translation="MSPISRSTPARLTVQATAKLPRLVLLGLSLIYIVAGLFMRDPWKT FT DDVVGLATMVTALREGGMTWLLPQVGHLAHAEEGPMITWVGGASMWLFGPWLGDITAGR FT LPNLLWFGIATVSVWYGTYLLGRRAEAQPLKLPFGGEPAARDYGRMLADAALLLLLATV FT GILQRLHETSVVPAIMAWQALAFYAMARTLDRPFLGATTLGVAVAGAFLTRGWIGAAPV FT MVAAVLAFYPRSLLWQRVRWLPWAALIAAALMLAWWLPATLAEGSDYWIRNWKTWTLAS FT YDWPDLRITGRTLRDLPWYLWPTWPLALLAIWRWRAWLYAPHIWVPLVLAATAALMLLF FT LDGPNDAEYAMLAVPCAILGAFSLPTLRRGVVNTLDWFAVMCFSLTAATAWLGWVALHF FT GWPAQISRNIARQTTGYEASISWLASALALVISAAWVVLVVWRLRSRPLALWRGTVLSA FT GGLTATWILLVLLWQPAVDYARSYRTVSGQLAEALQANLQPGECMRGLSLGSGQRASFL FT VFDNMSFTYDSKCTLVLQQTTHSSLRDGTAAYSDGATELWRGGRRADRHEVFRLLRVTP FT TR" FT misc_feature complement(join(1294519..1294584,1294615..1294680, FT 1294741..1294806,1294837..1294893,1294915..1294980, FT 1295146..1295211,1295251..1295316,1295362..1295418, FT 1295440..1295496,1295557..1295622,1295644..1295694, FT 1295821..1295877)) FT /note="12 probable transmembrane helices predicted for FT BP1231 by TMHMM2.0 at aa 20-39, 81-98, 105-127, 147-166, FT 173-192, 207-229, 242-264, 319-341, 348-367, 377-399, FT 419-441 and 451-473" FT CDS complement(1296053..1296319) FT /transl_table=11 FT /locus_tag="BP1232" FT /product="50S ribosomal protein L31" FT /note="Similar to Xylella fastidiosa 50S ribosomal protein FT L31 Xf1534 TR:Q9PD45 (EMBL:AE003983) (80 aa) fasta scores: FT E(): 2.4e-14, 53.75% id in 80 aa, and to Streptococcus FT pneumoniae R6 50S ribosomal protein L31 rpmE TR:AAK99980 FT (EMBL:AE008490) (80 aa) fasta scores: E(): 2.9e-14, 51.94% FT id in 77 aa" FT /protein_id="CAE41528.1" FT /translation="MKEGIHPEYREVVFMDVQTGNKFVTRSTIHTRETVEIDGKTYPLF FT KCDVTSESHPFYTGAQTRIVETGRVEKFRARFARTAGTVKSAS" FT misc_feature complement(1296080..1296319) FT /note="HMMPfam hit to PF01197, Ribosomal protein L31" FT misc_feature complement(1296104..1296160) FT /note="ScanRegExp hit to PS01143, Ribosomal protein L31 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(1296488..1297342) FT /transl_table=11 FT /locus_tag="BP1233" FT /product="putative tryptophan oxygenase" FT /note="Similar to Anopheles gambiae tryptophan oxygenase To FT TR:O77457 (EMBL:L76433) (392 aa) fasta scores: E(): FT 1.3e-09, 31.32% id in 332 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa2579 pa2579 TR:Q9I0Q7 FT (EMBL:AE004686) (288 aa) fasta scores: E(): 3.9e-70, 62.84% FT id in 288 aa" FT /protein_id="CAE41529.1" FT /translation="MQPTPTQRPEAIVHDEKAQLDFARDMSYGDYLHLDELLGAQHPLS FT PEHNEMLFIVQHQTSELWMKLMLHELRAAIAAIQQDRLQPAFKMLARVSKILEQLVSAW FT DVLATMTPPEYSALRPYLAHSSGFQSYQYRQIEYLLGNKNAAMLQPHAHRADLLAQVRA FT AFEAPSLYDEALRFLARSGLAVPAGALQRDWTQPYRADDQVEQAWLTVYRQSERYWNQY FT QLGEKLTDLEDAFRLWRFRHVTTVERIIGFKRGTGGTSGVTYLRKMLEVVLFPEIWKLR FT TDL" FT misc_feature complement(1296587..1296616) FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT CDS complement(1297370..1297999) FT /transl_table=11 FT /locus_tag="BP1234" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2081 TR:Q9I234 (EMBL:AE004635) (213 aa) fasta FT scores: E(): 3.2e-46, 58.25% id in 206 aa, and to FT Synechocystis sp hypothetical 23.8 kDa protein Slr2121 FT TR:P73988 (EMBL:D90911) (215 aa) fasta scores: E(): FT 9.2e-14, 31.62% id in 215 aa" FT /protein_id="CAE41530.1" FT /translation="MKRLWDISPPVSADSPVFPGDTPYRQQWKWSLTPDCPVNVSEITL FT SPHIGAHADAPLHYENGAAAIGAVALEPFLGPCRVIHAIGCGPLILPEHLAHAQAGLPP FT RVLVRTARHAALQWWVDDFSAYAPQTIEWLAGRGVTLIGIDTPSIDPASSKTLDSHHAI FT RRHDMRVLENLRLDDVDEGDYELIALPLALVQADASPVRAVLRELA" FT CDS complement(1298086..1298763) FT /transl_table=11 FT /gene="radC" FT /locus_tag="BP1235" FT /product="DNA repair protein" FT /note="Similar to Escherichia coli DNA repair protein RadC FT or B3638 SW:RADC_ECOLI (P25531) (222 aa) fasta scores: E(): FT 2.9e-26, 37.44% id in 211 aa, and to Pseudomonas aeruginosa FT DNA repair protein RadC homolog RadC or Pa5319 FT SW:RADC_PSEAE (Q9HTN5) (224 aa) fasta scores: E(): 1.2e-33, FT 48.61% id in 216 aa" FT /protein_id="CAE41531.1" FT /translation="MSLPEPLLRADWPRERLLRHGAATLSDPELLALALRTGVAGCNAV FT QLGHDLLRRFGGLRGLLGTSPAELQVVPGLGTAKACVLAAVLELARRTLEEDLVRQDAL FT ANPDLVRRYCQAALGHRKVEHCIALYLDARLKLIICAEVARGTLTQAQIYPREIVREAL FT RHHAAALILTHNHPGGTAAASAADIAMTRQIRQALALIDVRLIDHVIVAGAATVSMAAQ FT GHL" FT CDS 1298837..1299292 FT /transl_table=11 FT /gene="fkpB" FT /gene_synonym="slpA" FT /locus_tag="BP1236" FT /product="FkbP-type peptidyl-prolyl cis-trans isomerase" FT /EC_number="5.2.1.8" FT /note="Similar to Escherichia coli, and FkbP-type 16 kDa FT peptidyl-prolyl cis-trans isomerase FkbP or SlpA or B0028 FT or Z0033 or Ecs0031 SW:FKBX_ECOLI (P22563) (148 aa) fasta FT scores: E(): 5.9e-11, 33.56% id in 146 aa, and to Vibrio FT cholerae peptidyl-prolyl cis-trans isomerase, FkbP-type FT Vc0684 TR:Q9KU45 (EMBL:AE004154) (144 aa) fasta scores: FT E(): 5.4e-14, 38.35% id in 146 aa" FT /protein_id="CAE41532.1" FT /translation="MNVLVRPDSYLTLHYRIVLASGPAEGSVFTDTFDGRPATLQMGSG FT QWAPGLEAALLDHAEGERFSVALAPAQAYGERNPDLIQKVTRAMLAEHAGADATFEPGD FT LVEFAAPNGGRYSGVLKEINADWAMFDFNHPLAGTALRVDVAILGVL" FT misc_feature 1298912..1299280 FT /note="HMMPfam hit to PF00254, FKBP-type peptidyl-prolyl FT cis-trans isomerase" FT CDS 1299292..1300269 FT /transl_table=11 FT /gene="lytB" FT /locus_tag="BP1237" FT /product="putative drug tolerance protein" FT /note="Similar to Escherichia coli LytB protein LytB or FT B0029 or Z0034 or Ecs0032 SW:LYTB_ECOLI (P22565) (316 aa) FT fasta scores: E(): 5e-67, 59.04% id in 315 aa, and to FT Xylella fastidiosa drug tolerance protein Xf2416 TR:Q9PAS9 FT (EMBL:AE004050) (316 aa) fasta scores: E(): 6.6e-73, 64.4% FT id in 309 aa" FT /protein_id="CAE41533.1" FT /translation="MTAEVTAADAEVLLAQPRGFCAGVDRAIDIVERALELHGAPIYVR FT HEIVHNRYVVEDLRGKGAVFIDELDQAPAGAIVVFSAHGVSQAVRGEAEARGLRVFDAT FT CPLVTKVHIEVARMRAAGREIVMIGHKGHPEVEGTLGQAQGGMYLVETVEDVAALQVSD FT PGNLAYVTQTTLSVDDAAAVAGALKARFPGIVEPKKSDICYATQNRQDAVKLLAPECDL FT VLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPAWLQGRRSIGITAGASAPEVLV FT QQVVERVRELGAVSVRTMPGLEESVAFPLPKGLSRKIAQTESLE" FT misc_feature 1299325..1300164 FT /note="HMMPfam hit to PF02401, LytB protein" FT CDS 1300308..1300952 FT /transl_table=11 FT /locus_tag="BP1238" FT /product="putative glutathione-S-transferase" FT /note="Similar to Pseudomonas sp glutathione-S-transferase FT homolog NagL TR:O86043 (EMBL:AF036940) (212 aa) fasta FT scores: E(): 4.3e-42, 53.52% id in 213 aa, and to Rhizobium FT loti glutathione S-transferase mlr1135 TR:Q98L85 FT (EMBL:AP002996) (216 aa) fasta scores: E(): 6.3e-47, 57.27% FT id in 213 aa" FT /protein_id="CAE41534.1" FT /translation="MELYSYFRSSAAYRVRIALNLKGLQYDYRAVHLLKDGGQQLAPQY FT CALNPNALVPALVDGDAVLTQSLAIVEYLEETHPQPPLLPSDALGRARVRAIAQTIACD FT IHPLNNLRVLKYLKHELKVSEEAKNAWYKHWVELGLAGVEAMLAGAPHTGRFCHGDAPT FT LADLCLVPQLANARRFGCDLSAMPTLARIEAACAELPAFQQAAPAAQPDAE" FT misc_feature 1300308..1300907 FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain" FT tRNA complement(1301002..1301077) FT /note="tRNA Thr anticodon CGT, Cove score 90.68" FT tRNA 1301250..1301325 FT /note="tRNA Asn anticodon GTT, Cove score 87.19" FT CDS complement(1301442..1301777) FT /transl_table=11 FT /locus_tag="BP1239" FT /product="conserved hypothetical protein" FT /note="Similar to Helicobacter pylori J99 putative jhp0839 FT TR:Q9ZKU6 (EMBL:AE001513) (99 aa) fasta scores: E(): FT 0.0048, 30% id in 80 aa" FT /protein_id="CAE41535.1" FT /translation="MAMHHARSGELIDLRPLGESLRETVSQALVRADHLEVMRLVLPRD FT QQLPSHAIDASAITIQCLEGAVMLTAQDTTQRMPAGTLVYLAPGVAHAVKALEDSTLLV FT TLMLARP" FT CDS 1301986..1302990 FT /transl_table=11 FT /locus_tag="BP1240" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein SMC00684 TR:CAC47266 (EMBL:AL591791) (381 aa) fasta FT scores: E(): 1.8e-27, 35.07% id in 345 aa, and to FT Agrobacterium tumefaciens Agr_l_2389p agr_l_2389 FT TR:AAK89764 (EMBL:AE008321) (411 aa) fasta scores: E(): FT 9.5e-27, 33.7% id in 359 aa, and to Escherichia coli FT hypothetical protein YjiA or b4352 SW:YJIA_ECOLI (P24203) FT (318 aa) fasta scores: E(): 4.7e-21, 31.15% id in 321 aa" FT /protein_id="CAE41536.1" FT /translation="MDAFKQDSRIGVTVLTGFLGSGKTTLLNRLVQEPEYAEAVVIVNE FT FGDIGVDHHLVRNVDDRIVLLEGGCICCTASGGLVDTLRDLFMLVVRRRIKPFKRVLLE FT TTGLAGPASVMFSLRHDPFLAERYAYHGAIAMVDAQHVREQLMVQPEAAQQIALADLVV FT FSKADLAGQVQLASAMRDVARANPGVPMCVVRRGEPLDERLHGDFLVRERRQAAPLGRW FT LGAFAAPPGGPHPNVAHFSLNLSVPLTRGMFLARMSEIQAAYDRGILRIKGLVCFEAEA FT LPWAVHGVHRQLYPLEALPQWPGDDRQSRLVFILRGLDRDAVQADVARRLQQG" FT misc_feature 1302034..1302057 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1302106..1302930 FT /note="HMMPfam hit to PF02492, Cobalamin synthesis FT protein/P47K" FT CDS complement(1303027..1303632) FT /transl_table=11 FT /locus_tag="BP1241" FT /product="conserved hypothetical protein" FT /note="Similar to Agrobacterium tumefaciens Agr_c_4536p FT TR:AAK88228 (EMBL:AE008162) (196 aa) fasta scores: E(): FT 3.4e-34, 53.96% id in 189 aa, and to Escherichia coli from FT bases 1061668 to 1073377 b1008 TR:P75894 (EMBL:AE000202) FT (196 aa) fasta scores: E(): 2.2e-34, 54.05% id in 185 aa" FT /protein_id="CAE41537.1" FT /translation="MNAPLSLAAQEQIFQAARTFNRYTEQSISDATLHELYELMKWGPT FT AMNSQPGRFIFLRSAEARQRLAPALSPGNLEKTLAAPVTVIVAQDTQFYEHLPTQFSAY FT DARPVFENNADAARATAMRNSSLQGAYLIVAARMLGLDAGPMSGFDAAKVDAEFFPDGR FT CRANFLVNLGYGDPAGNYPRGPPPGLRHRGANPLIARP" FT misc_feature complement(1303150..1303608) FT /note="HMMPfam hit to PF00881, Nitroreductase family" FT CDS 1303737..1304648 FT /transl_table=11 FT /locus_tag="BP1242" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa0056 TR:Q9I776 (EMBL:AE004445) FT (306 aa) fasta scores: E(): 1.8e-68, 61.33% id in 300 aa, FT and to Vibrio cholerae transcriptional regulator, LysR FT family Vca1055 TR:Q9KKP7 (EMBL:AE004431) (307 aa) fasta FT scores: E(): 4.1e-38, 43.49% id in 292 aa" FT /protein_id="CAE41538.1" FT /translation="MDRLKAMQVFVEVADRGSLSAAAMHLGMSRAMVSRYLAELEAWVG FT VRLLHRTTRRLSLTPAGSETLPRCRRMLEMVGDMREAVAAPDAEPRGLLRVTAAMSFGG FT AQLAEAVAEFVRRHPAASIDLLLVDRAVNLVEERVDLAVRITNDLDPNLIGRRLADCRS FT VVCVAPQYLQQHGAPARAEDLSLHNCLTHSYFGRSLWRFERAGEPVEVPVGGNITANET FT DVLMRAALAGAGIVMLPTYLAAGQIAAGSLRLLLPDCAPPVLGIHGVYVSRKQMPLILR FT TMLDFLAERFSPAPWDAALKGR" FT misc_feature 1303746..1304165 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 1303785..1303850 FT /note="Predicted helix-turn-helix motif with score 1774 FT (+5.23 SD) at aa 17-38, sequence GSLSAAAMHLGMSRAMVSRYLA" FT misc_feature 1303788..1303880 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT tRNA complement(1305454..1305530) FT /note="tRNA Met anticodon CAT, Cove score 85.01" FT CDS 1305600..1306688 FT /transl_table=11 FT /locus_tag="BP1243" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf2452 TR:Q9PAP3 (EMBL:AE004054) (327 aa) fasta scores: FT E(): 8.6e-19, 36.48% id in 296 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa3197 TR:Q9HZ43 FT (EMBL:AE004743) (332 aa) fasta scores: E(): 1.3e-16, 37% id FT in 300 aa" FT /protein_id="CAE41539.1" FT /translation="MNDSEAIFVLETALLCASQPMQFAEMRKLFGDDQDIDNNALRAWL FT EALQAQWNERGLELVQLASGWRFQSRPQMQRYLERLNPEKPPKYSRAVLETLAIVAWRQ FT PVTRGDIEDIRGVTVSSQIVKVLEDRGWIEVIGHRDAPGRPALFATTRQFLDDLGLRAL FT DELPPLESAQAAAALAGLDLGGAEVLVEAVDAAEGDAARDEASGDEAAGQVAASLGDAQ FT PEVAQAGVDGVESAVSPEPVLPVSVDDDANEPAETAAASLPGAGVAEPAHESAGAAPDD FT GNGPVEVPPLQPDQISLPDEPAEARPHVPAPEVGPGEPQPEIVPAAPEPVTPPAPGRDE FT ADGVVSNPEDDEPAASGRLPKV" FT CDS 1306706..1308472 FT /transl_table=11 FT /locus_tag="BP1244" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr8253 protein TR:Q983N1 FT (EMBL:AP003013) (546 aa) fasta scores: E(): 5.6e-20, 31.49% FT id in 562 aa, and to Escherichia coli hypothetical protein FT YciL or B1269 SW:YCIL_ECOLI (P37765) (291 aa) fasta scores: FT E(): 2.1e-31, 50.17% id in 293 aa" FT /protein_id="CAE41540.1" FT /translation="MTTNTTMQDDNSFPDNESPVAQPPVDESAASGEAGDGEGGARARG FT RKLRTPFRRRRGDAAAAGEAGADEAGSQPAAQSEGDARASERDADQALAYLDNAARIEQ FT RLGKYLNSEAVMPKLHKVLADAGIGSRREMEELIVAGRVSVNGEPAHIGQRVAPNDQVR FT VNGKPIARPNAKKPPRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDL FT NTEGLLIFTTSGDMANRIMHPRYGTEREYAVRVLGEMDDAQRKSLTEGIELEDGKAAFG FT SFEYLGGDGSNRWYRVTLQEGRNREVRRMFEAVGVTVSRLIRTRFGDIVLPRNLRRGRW FT EELDGSLVTALMVQLGLLRDGDESEGRRKSRQPQSHDSALPPGFGTLERNGMNGARIGR FT RGKLQGGRPGSAAACPSDPFGTGLMITGGYANGHPLGNDSAAGRGGKGKPAKGKAGGDK FT PQRGQGRKAAGAQAGGQGAAAKPAGARGGKKAGGRAAAPGAKGAGGRAGGNKAASAGGK FT AAGVAKPASPTGNRGPAAPKPQRARRGGGGAGGGGGGGGGGGGRGDDWQPKGAGAHESR FT LGFMGGRGGRGR" FT misc_feature 1307060..1307191 FT /note="HMMPfam hit to PF01479, S4 domain" FT misc_feature 1307240..1307644 FT /note="HMMPfam hit to PF00849, RNA pseudouridylate FT synthase" FT misc_feature 1307357..1307401 FT /note="ScanRegExp hit to PS01149, Rsu family of FT pseudouridine synthase signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 1308935..1309441 FT /transl_table=11 FT /locus_tag="BP1245" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma1895 or Nmb1641 TR:Q9JR05 (EMBL:AL162757) (149 FT aa) fasta scores: E(): 2.7e-17, 40.99% id in 161 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa4746 FT TR:Q9HV53 (EMBL:AE004888) (152 aa) fasta scores: E(): FT 1.9e-10, 41.52% id in 118 aa" FT /protein_id="CAE41541.1" FT /translation="MADLFALTEEALAGMDIELVDVERAAMGLLRVTIDRVDGVRIEDC FT EQVSRQLSRVYEVENIDYKRLEVGSPGVDRPLRNEAEFRRFAGERIEIKLREALDGRKV FT FSGTLRAPEADGASGQDDTAGAGKAVFGLEFEAKKNDIQVLSFTLDDIERAKLDPVLDF FT KGKKR" FT misc_feature 1308953..1309405 FT /note="HMMPfam hit to PF02576, Uncharacterized BCR, YhbC FT family COG0779" FT CDS 1309438..1310916 FT /transl_table=11 FT /gene="nusA" FT /locus_tag="BP1246" FT /product="N utilization substance protein A" FT /note="Similar to Escherichia coli N utilization substance FT protein A NusA or B3169 or Z4530 or Ecs4050 SW:NUSA_ECOLI FT (P03003) (495 aa) fasta scores: E(): 3.8e-86, 52.11% id in FT 497 aa, and to Neisseria meningitidis N utilization FT substance protein A Nmb1642 TR:Q9JYD3 (EMBL:AE002514) (500 FT aa) fasta scores: E(): 5.8e-95, 56.8% id in 500 aa" FT /protein_id="CAE41542.1" FT /translation="MSREILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADI FT RVSIDRETGGHEGFRRWLVVPDEAGLQEPDKQELLSEAREMAPDIEVGEYIEEALEPVE FT FGRIGAQAAKQAILQKIRDAEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKIEAR FT LPRSEMIPKENLRVGDRVRAFVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGL FT LEIKAAARDPGVRAKIAVVAYDKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSED FT PAQFVIGALAPANVESIVVDEDKHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINI FT MTPEESLNRQETERAALRATFMSKLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEA FT FDEDTINELRARARNALLTEAIAQEERLETAQDLLELEGITPELAAKLAERQVHTRDDL FT AELSTDELAEIAGLQEEEASDLIMRARAHWFDEE" FT misc_feature 1309453..1309527 FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature." FT misc_feature 1309837..1310043 FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT misc_feature 1310359..1310502 FT /note="HMMPfam hit to PF00013, KH domain" FT CDS 1310993..1313986 FT /transl_table=11 FT /gene="infB" FT /gene_synonym="ssyG" FT /locus_tag="BP1247" FT /product="translation initiation factor IF-2" FT /note="Similar to Escherichia coli translation initiation FT factor IF-2 InfB or SsyG or B3168 or Z4529 or Ecs4049 FT SW:IF2_ECOLI (P02995) (890 aa) fasta scores: E(): 2.6e-85, FT 47.9% id in 1000 aa, and to Neisseria meningitidis FT translation initiation factor IF-2 Nmb1643 TR:Q9JYD2 FT (EMBL:AE002514) (962 aa) fasta scores: E(): 7.2e-103, FT 54.56% id in 1008 aa" FT /protein_id="CAE41543.1" FT /translation="MSSNTVAQFATELKMPANVLLEQLRAAGVDLKSVDDAVTDSDKAK FT LLESLRRAHGATEGKKITLTRRQTSEIRQADATGRSRTIQVEVRKKRVFVKRDPAELAA FT EQAAARAEEAAAEAVPAEAAPAPAEPVRAEPAVETAAKPVEPPVAEAPAEPVAAPAAEP FT QPEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAEPVEPAKNVSVTETEAEQAR FT PEPVVHAQTELTSQTPTPVAQPSAPAESPKSVKAEPAAAPKTTAKPGEIRRAAAPAAPD FT RAREEARRAAEAEAAALREMLSRPRKVLRAPEPEPQAGALSGTLHKPAGKPATTAAPKK FT DAKPGAPGAKKTIKTAEVSSTWSDDSARKKPADNKPAVATRDGWRAGGKGGRGGRNSRN FT QHQDRRHEQVQQEFIAREIHVPETISVADLAHKMSVKAAEVIKQLMKLGQMVTINQVLD FT QETAMIVVQEFGHTAIAAKLDDPEAFLDETAAVTEAEAEPRAPVVTVMGHVDHGKTSLL FT DYIRRAKVASGEAGGITQHIGAYHVETGRGVVTFLDTPGHEAFTAMRARGAKATDIVIL FT VVAADDGVMPQTREAIHHAKAGGVPLVVAVNKIDKPEANPERVKQELVAEEVVPEEYGG FT DVPFVPVSAKTGAGIDDLLENVLLQAEILELKAPIEAPAKGLVIEARLDKGRGPVATIL FT VQSGTLKRGDVVLAGASFGRVRAMLDENGKQIQTAGPSIPVEIQGLTEVPAAGDELMVL FT SDERKAREIALFRQGKFRDVKLARQQAANLESMFDNLGEGTQTLALIVKTDVQGSQEAL FT VSSLTKLSTDEVRVQVVHAAVGGISESDVNLAIASNAVVIGFNVRAEQSAKKLAETNGI FT DLRYYNIIYDAVDEVKAAMSGMLAPEKREEVIGLVEVREVYTISRIGTVAGCMVLDGVV FT RRDSQVRLLRNNVVQWTGHLDSLRRFKDDVKEVKSGFDCGLTLRGNNDLQLGDQLEVFE FT IKEIARTL" FT misc_feature 1312484..1313512 FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT misc_feature 1312511..1312534 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1313558..1313959 FT /note="HMMPfam hit to PF02131, Initiation factor 2" FT misc_feature 1313834..1313902 FT /note="ScanRegExp hit to PS01176, Initiation factor 2 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 1314014..1314415 FT /transl_table=11 FT /gene="rbfA" FT /gene_synonym="p15b" FT /locus_tag="BP1248" FT /product="ribosome-binding factor A" FT /note="Similar to Escherichia coli ribosome-binding factor FT A RbfA or P15b or B3167 or Z4528 or Ecs4048 SW:RBFA_ECOLI FT (P09170) (132 aa) fasta scores: E(): 7e-10, 37.79% id in FT 127 aa, and to Pseudomonas aeruginosa ribosome-binding FT factor A RbfA or Pa4743 TR:Q9HV56 (EMBL:AE004888) (129 aa) FT fasta scores: E(): 7e-15, 46.4% id in 125 aa" FT /protein_id="CAE41544.1" FT /translation="MSRHKSKSIPGRNLRLADQIQKDLAGIIQREIDMTRAGLITLSGV FT ELSADYAHAKVYFTVLGAEPDTAAALLNEKAGWLHSQLYKLLHIHTVPTLRFVHDPQIT FT RGIEMSVLIDRANRPGPHSGVPDEPEDQS" FT misc_feature 1314047..1314352 FT /note="HMMPfam hit to PF02033, Ribosome-binding factor A" FT CDS 1314460..1315194 FT /transl_table=11 FT /gene="truB" FT /gene_synonym="p35" FT /locus_tag="BP1249" FT /product="tRNA pseudouridine synthase B" FT /EC_number="4.2.1.70" FT /note="Similar to Escherichia coli, and tRNA pseudouridine FT synthase B TruB or P35 or B3166 or Z4527 or Ecs4047 FT SW:TRUB_ECOLI (P09171) (314 aa) fasta scores: E(): 5.3e-39, FT 47.91% id in 240 aa, and to Pseudomonas aeruginosa tRNA FT pseudouridine synthase B TruB or Orp or Pa4742 FT SW:TRUB_PSEAE (P72154) (304 aa) fasta scores: E(): 5.9e-41, FT 50.41% id in 244 aa" FT /protein_id="CAE41545.1" FT /translation="MAKRRGLALDGVLLLDKPVGLSSNHALQRAKRTVDAAKAGHTGTL FT DPFATGLLVCCMGRATKISGRMLEADKTYQATLQFGEETDSGDLTGHIVARAPDGFAGV FT EEAALRDVLSRFVGTIEQIPPMYSALKRDGKPLYEYARAGIELDRPPRQVTIRHIELLS FT FSGMQAQIDVACSKGTYIRTLAQDIGRALGCHAHLAALRRTHVGPFSLDRAVTLEALQA FT MPDAKQALLAMNELPAGLLPAT" FT misc_feature 1314541..1315002 FT /note="HMMPfam hit to PF01509, TruB family pseudouridylate FT synthase (N terminal domain)" FT CDS 1315211..1317031 FT /transl_table=11 FT /gene="typA" FT /gene_synonym="bipA" FT /locus_tag="BP1250" FT /product="GTP-binding elongation factor" FT /note="Similar to Escherichia coli GTP-binding protein FT TypA/BipA TypA or BipA or B3871 SW:TYPA_ECOLI (P32132) (591 FT aa) fasta scores: E(): 2.4e-140, 63.34% id in 592 aa, and FT to Neisseria meningitidis GTP-binding protein TypA Nmb1199 FT TR:Q9JZB7 (EMBL:AE002467) (603 aa) fasta scores: E(): FT 1.5e-162, 72.91% id in 598 aa" FT /protein_id="CAE41546.1" FT /translation="MTRALRNVAIIAHVDHGKTTLVDQLLRQSGTFRENQSVAERVMDS FT NDIEKERGITILAKNCAVEYEGTHINIVDTPGHADFGGEVERVLSMVDGVLLLVDAVEG FT PMPQTIFVTRKALALGLKPIVVVNKIDRPGARPDFVINATFELFDKLGATEEQLDFPVV FT YASGLSGYAGLTDDVRSGDMRPLFEAIMKYVPQRDDDANGPLQMQIISLDYNSYVGKIG FT VGRINRGRMRGNMDVAFRFGPDGEVQRGRINQVMKFSGLERVVVDEAEAGDIVLVNGIE FT DLHIGSTITDPSTPEGLPVLRIDEPTLTMNFMVNTSPLAGREGKFVTSRQIRDRLEREL FT KSNVALRVRDTGDDTVFEVSGRGELHLTILLENMRREGYELAVSRPRVVFKEIDGVKCE FT PFEALTVDVEDAHQGGVMEELGRRKGDLQDMQPDGRGRTRLEYIIPARGLIGFQNEFLT FT LTRGTGLMSHIFHEYAPLREGSIGERRNGVLISQDNGDAVAYALWKLQDRGRMFVSPGE FT PLYEGMIIGIHSRDNDLVVNPIKGKQLTNVRASGTDEAVRLVPPIQMSLEYAVEFIDDD FT ELVEITPKSIRLRKRYLQEHERRRASRENA" FT misc_feature 1315217..1316389 FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT misc_feature 1315244..1315267 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1315340..1315387 FT /note="ScanRegExp hit to PS00301, GTP-binding elongation FT factors signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(1317102..1317827) FT /transl_table=11 FT /locus_tag="BP1251" FT /product="putative toxin" FT /note="Similar to the previously sequenced Bordetella FT pertussis pertussis toxin subunit 2 precursor PtxB FT SW:TOX2_BORPE (P04978) (226 aa) fasta scores: E(): 1.6e-06, FT 30.43% id in 207 aa, and to Bordetella pertussis pertussis FT toxin subunit 3 precursor PtxC SW:TOX3_BORPE (P04979) (227 FT aa) fasta scores: E(): 1.8e-06, 32.67% id in 202 aa" FT /protein_id="CAE41547.1" FT /translation="MKRISPRAGWLAASLLCLLLPGARAWAASELILVRGYGNCPSGYA FT PLTYDQAHRPSLRARMRELSGNEPWPIHGLADGQYLGGKYGGELKRARLADIRGLRDHF FT CLASGSDGAIGRGVHAWGHVPGWGAWQWRRTLPPATGLGHYSNVRVARLDDLPFGDLCA FT VFTRDGNPVVQACISPQAGRLHRESYATLRRALETLRRQGLPLRVYVDHDRRPDFAAVP FT DVPAYSITGLATCNRGGCM" FT misc_feature complement(1317747..1317827) FT /note="Signal peptide predicted for BP1251 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.986 between residues 27 and 28" FT CDS complement(1317824..1318228) FT /transl_table=11 FT /locus_tag="BP1252" FT /product="putative exported protein" FT /note="no significant database matches" FT /protein_id="CAE41548.1" FT /translation="MPPFKFTVPALAALLAAWPLAHAGAVHDYPSAVIEAYHIGQLHTG FT STPFVCARFHPEGQASPQALRIACAVQRYGKARRHFDEHVARIITCHAANRPTSLRVES FT DVWTDPQIYRLFSRAEILSIAPCGAGGLLP" FT misc_feature complement(1318160..1318228) FT /note="Signal peptide predicted for BP1252 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.991 between residues 23 and 24" FT CDS complement(1318380..1319009) FT /transl_table=11 FT /locus_tag="BP1253" FT /product="putative exported protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb0283 TR:Q9K184 (EMBL:AE002385) (210 aa) fasta FT scores: E(): 1.1e-35, 55.89% id in 195 aa, and to Neisseria FT meningitidis hypothetical protein Nma2204 TR:Q9JSP2 FT (EMBL:AL162758) (210 aa) fasta scores: E(): 1.7e-35, 55.89% FT id in 195 aa" FT /protein_id="CAE41549.1" FT /translation="MSEIKTAAEKLADIGPAVSMFGSARISRESPYYETCAAISAALAG FT AGFAIIAGGGPGIMEAANKGAFEAGGTSVGLNISLPHEAHNNEYQTISLSFEYFYSRKA FT TFFMHSMAYVAMPGGFGTLDELFEALTLIQTGKVPPAPIVLVGSEFWHGLVDWLGEQLL FT ANGMIAAHDLNLFIIEDDPAKVVRKVVEFHDKQGRTDSQYAPSLPA" FT misc_feature complement(1318836..1318901) FT /note="1 probable transmembrane helix predicted for BP1253 FT by TMHMM2.0 at aa 36-58" FT CDS 1319062..1321776 FT /transl_table=11 FT /gene="polA" FT /gene_synonym="resA" FT /locus_tag="BP1254" FT /product="DNA polymerase I" FT /EC_number="2.7.7.7" FT /note="Similar to Escherichia coli DNA polymerase I PolA or FT ResA or B3863 SW:DPO1_ECOLI (P00582) (928 aa) fasta scores: FT E(): 9.3e-119, 52.7% id in 926 aa, and to Pseudomonas FT aeruginosa DNA polymerase I PolA or Pa5493 TR:Q9HT80 FT (EMBL:AE004962) (913 aa) fasta scores: E(): 8e-173, 53.93% FT id in 916 aa" FT /protein_id="CAE41550.1" FT /translation="MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKL FT VQDHKAEYAVCVFDARGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLA FT IEGVEADDIIGTLARQASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNS FT KFGVPPERIVDYLMLVGDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAG FT NNLREAIPNFPLTRTLLTVKCDCDLTGHVSDWEDLAWRERDAATLTALFDRYGFRTWLR FT ELTGDQERLPTGDARAVPQAVAPAELDYRIITDWAAFDAWMALVEDAPLVALDTETTSL FT DEMQARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHH FT AKYDTHVFANEGVSLAGVAEDTMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKG FT AKQIGFDEVAVPLAGHYSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVV FT ERNGVKVDAQELGRQSHKLGQEMLALEQRAYELAGQPFNLNSPKQLGEILFGRMGLPVV FT RKTAGGAPSTDEEVLSKLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMISPATGRVHTH FT YSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQGKLLSADYSQIELRIMAHVS FT DDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGVFGLASNL FT GITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQLPDIRAASGPRR FT QGAERAAINAPMQGTAADLIKMAMVAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAA FT VAEALPRLMCDVATLRVPLVAEVGMGTNWEQAH" FT misc_feature 1319068..1319910 FT /note="HMMPfam hit to PF01367, 5'-3' exonuclease, FT C-terminal SAM fold" FT misc_feature 1320040..1320549 FT /note="HMMPfam hit to PF01612, 3'-5' exonuclease" FT misc_feature 1321048..1321665 FT /note="HMMPfam hit to PF00476, DNA polymerase family A" FT misc_feature 1321249..1321308 FT /note="ScanRegExp hit to PS00447, DNA polymerase family A FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 1321887..1322723 FT /transl_table=11 FT /locus_tag="BP1255" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE41551.1" FT /translation="MLLLWILLATIAGGLIAVSIASWLAYRVFAKYLHHMVSLSVGVLL FT SVALLHLLPEAFETAHADARALFALMLAGLIGFFVLEKIALLRHSHHHEGDGHHHHKGH FT NRREAGRGGVLILVGSSLHNLADGVLVAAAFLTDPMLGVLTAASIIVHEVPHKLGDFVV FT LLNAGLARGRAFSLILFTSLCTAAGGVVGYFVLQEAQAAVPYVLVVAASSFLYISVADL FT MPQMHERVSLADAVPQLLLVGAGVLLIYGVTSFMHHEHDPAHEHGQHAIEAADHRH" FT misc_feature 1321887..1321949 FT /note="Signal peptide predicted for BP1255 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.957) with cleavage site FT probability 0.730 between residues 21 and 22" FT misc_feature join(1321896..1321964,1321983..1322048,1322076..1322129, FT 1322226..1322294,1322406..1322474,1322493..1322546, FT 1322589..1322642) FT /note="7 probable transmembrane helices predicted for FT BP1255 by TMHMM2.0 at aa 4-26, 33-54, 64-81, 114-136, FT 174-196, 203-220 and 235-252" FT CDS 1322778..1323566 FT /transl_table=11 FT /locus_tag="BP1256" FT /product="putative carboxymethylenebutenolidase" FT /EC_number="3.1.1.45" FT /note="Similar to Escherichia coli putative FT carboxymethylenebutenolidase YsgA or B3830 SW:DLHH_ECOLI FT (P56262) (258 aa) fasta scores: E(): 3.8e-48, 51.58% id in FT 252 aa, and to Methylobacterium extorquens putative FT carboxymethylenebutenolidase SW:DLHH_METEX (P71505) (291 FT aa) fasta scores: E(): 7.5e-53, 55.93% id in 261 aa. Also FT similar to BP2713, 55.253% identity (55.469% ungapped) in FT 257 aa overlap." FT /protein_id="CAE41552.1" FT /translation="MSFAAAAGSTAPTTIHTDTQGLSHGDFELAVPGGPVAAYYAAPAG FT REQLPIVLVVQEIFGLHEHIKDVCRRLAHDGYLAVSVNLYQRQGDASRYDNIPGLVAEL FT VSKVPDEQVHADLDASLAWAAAHGGDGARVGVTGFCWGGRTTWMYAARNPAVKAGVAWY FT GRLSSGHGPLIKQVPLDVAGSLHAPVLGLYGGKDESIPLDDVRAMEARLQQGGAPAQAS FT RIVVYPQAGHAFLADYRPSYRAADAQDGWRRMLDWFALYL" FT misc_feature 1322883..1323563 FT /note="HMMPfam hit to PF01738, Dienelactone hydrolase FT family" FT CDS complement(1323600..1325261) FT /transl_table=11 FT /locus_tag="BP1257" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4822 TR:Q9HUY8 (EMBL:AE004895) (555 aa) fasta FT scores: E(): 1.1e-66, 44.82% id in 551 aa, and to Rhizobium FT meliloti hypothetical transmembrane protein Smc00233 FT TR:CAC46237 (EMBL:AL591788) (548 aa) fasta scores: E(): FT 1.8e-57, 37.47% id in 555 aa" FT /protein_id="CAE41553.1" FT /translation="MSGLLPLLDFAGYVALLLWGVHMVQTGVQRAFGAALSIALGRALG FT TRLRAFASGLGITAALQSSTATGLMITGFAAGGVVALVPALAAMLGANVGTTLIVQLLS FT FDLTSLAPILILAGVWMFRRAAPGRTRDLGRVFIGLGLLLLSLHQLVQLFQPFETAPLL FT GVLLDALASQPVAAVLLAAALTWAAHSSVAVVVLVMSLASHGMVNPALAFALVLGANLG FT TAINPMIEGVTGDDPAARRLPLGNLLTRVAGVLAGIILLPWLQPWLSGLAGDPAHAVAN FT FHTLFNVVIALVFLPILTPYAALLTRWLPKRADPNDPARPQYLDEWAHDVPAVALGNAA FT REALRMADMLQTLLLYARAGFKRDNRHRMVQARQLDSALDKLETAITTYLATLDQENMT FT REDHQRLDTILAFCSNIGHAGDIAYHGLLNHIGRLRKQGLLLSADQRASLDATLGELIA FT NQRQAAALFVTDDLRQARALAGEKARFRALEAEAAETQLQQIKSGKVDAAEVGALYLDI FT LRDLKGINSHVVGASAYPLLARHGELLPSRLRDAGN" FT misc_feature complement(1323978..1325192) FT /note="HMMPfam hit to PF02690, Na+/Pi-cotransporter" FT misc_feature complement(join(1324350..1324415,1324455..1324520, FT 1324566..1324631,1324671..1324736,1324797..1324862, FT 1324902..1324967,1324998..1325063,1325199..1325249)) FT /note="8 probable transmembrane helices predicted for FT BP1257 by TMHMM2.0 at aa 4-21, 66-88, 98-120, 133-155, FT 175-197, 210-232, 247-269 and 282-304" FT CDS 1325429..1326820 FT /transl_table=11 FT /gene="sdaA" FT /locus_tag="BP1258" FT /product="L-serine dehydratase 1" FT /EC_number="4.3.1.17" FT /note="Similar to Escherichia coli L-serine dehydratase 1 FT SdaA or B1814 SW:SDHL_ECOLI (P16095) (454 aa) fasta scores: FT E(): 1e-88, 53.89% id in 462 aa, and to Pseudomonas FT aeruginosa L-serine dehydratase SdaA or Pa2443 TR:Q9I139 FT (EMBL:AE004671) (458 aa) fasta scores: E(): 4.7e-121, FT 68.53% id in 464 aa" FT /protein_id="CAE41554.1" FT /translation="MAVSVFDLFKIGIGPSSSHTVGPMRAALLFVQGLERDGLLARVAS FT VRAELYGSLGATGKGHGTDKGVLLGFMGQAPDTVDPAAIAGMLQAVRANRRVLLLGRHD FT VPFVEKEHMLFYRREALAEHPNGMKFHAFDADGQPLRESRYLSVGGGFVVTAGAANAQV FT IGAHDQLPYPFRTGRELLDMCRASGHSVAGLMMRNELTWRGAAEIEQGLDRIWEVMQEC FT VARGCGIGHPEADGDLPGPLKVRRRAPELYRALTQRAERTLSDPLSVMDWVNLYAMAVN FT EENAAGGRVVTAPTNGAAGIIPAVLHYYDRFVPAANRAGVHDFLLTAAAIGLLYKYNAS FT LSGAEVGCQGEVGVACSMAAGALAAVQGGSVEQVENAAEIGMEHNLGLTCDPVGGLVQI FT PCIERNAMASVKAVNAARMALRGDGHHYVSLDSVIKTMRETGADMKTKYKETARGGLAV FT NIVEC" FT CDS complement(1326958..1327617) FT /transl_table=11 FT /locus_tag="BP1259" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf2273 TR:Q9PB71 (EMBL:AE004039) (236 aa) fasta scores: FT E(): 1.1e-72, 79.42% id in 209 aa, and to Pasteurella FT multocida hypothetical protein Pm0345 TR:Q9CNT0 FT (EMBL:AE006070) (233 aa) fasta scores: E(): 7.1e-70, 74.17% FT id in 213 aa" FT /protein_id="CAE41555.1" FT /translation="MSQLVRPTLELPAGRRKVLLHSCCAPCSGEVMEAMTASGIDYAIY FT FYNPNIHPVKEYEIRKNENIRFAEEHGIEFIDADYDMDNWFERVKGMENEPERGIRCTA FT CFDMRFERTALYAHEHGFDTITSSLGISRWKDMNQINGCGERAAARYDDLVYWTYNWRK FT GGGSQRMIEISKRENFYQQEYCGCVYSLRDTNRHRRAQGRERIHLGVKFYGVEEKL" FT misc_feature complement(1326979..1327566) FT /note="HMMPfam hit to PF02677, Uncharacterized BCR, FT COG1636" FT CDS complement(1327653..1330535) FT /transl_table=11 FT /gene="glnE" FT /locus_tag="BP1260" FT /product="glutamate-ammonia-ligase adenylyltransferase" FT /EC_number="2.7.7.42" FT /note="Similar to Escherichia coli glutamate-ammonia-ligase FT adenylyltransferase GlnE or B3053 SW:GLNE_ECOLI (P30870) FT (946 aa) fasta scores: E(): 2.4e-72, 36.55% id in 982 aa, FT and to Neisseria meningitidis putative FT glutamate-ammonia-ligase adenylyltransferase GlnE or FT Nma0035 TR:Q9JX72 (EMBL:AL162752) (896 aa) fasta scores: FT E(): 3.3e-74, 44.3% id in 869 aa" FT /protein_id="CAE41556.1" FT /translation="MQYRPLIHESRLSVCLSPAMSSAPPFAAALAWSGHLRRRLDAHPD FT LAAWLANACAHPVSANVLAAWQAELSGPDAPEVLPVEQCRGMLRKLRERVFLTLIVRDL FT GGQADLEEVVGAMTVLADIAVGTAYRSVAAELAAVHGLPREQSTGDPQEMLIVGMGKLG FT GRELNVSSDIDLVMLYGDEGETDGPRRISNHEFYGRLTRRMMPVLSEVDADGQVFRTDL FT RLRPDGDAGPLAWSLDALEHYLIGQGREWERYAWLKARLMPAQAFADSNPDAQARQLES FT LRVPFVYRKYFDFDALAALRALRERIRQDWQRRALARNGVDSANNIKLGDGGIREIEFI FT VQLSQLIRGGRMPALQRRGLLEALHAERAAGLVPEGDAQKLEAAYRFLRRTEHALQYRE FT DEQTHLLPADPAQRAALAAALGYEPAAFERTLAEHRAFVSQTFRNAFRLAGMGEEDDSP FT APARTHANGHAMRPHAGALHDIEERLAGQIQRDFPEHAEDLLRRTETLLGSHRVRSLPD FT SSRHRLEALLPAALTAATQTSAPMDAALRLFDLIETIAQRSAYLALLAEYPDTLARVAR FT MVAASPWAAQYLTQHPLLLDSLIDWRTLFEPLDFAQVAHQLAADLDACRLPDGEPDIER FT QMNLMRDVQRQASFQLLAQDLEGELTVEKLADQLSALADLLLAETIRRVWPLVNRRPGA FT EPHLAVIAYGKLGGKELGYASDLDLVFLFDDDREDAAELYAKLGRRMTSWLSTMTSSGR FT LYEVDLRLRPDGNAGLLAVSLEAFEQYQRSHAWPWEHQALTRARYAAGDTEAGARFERI FT RADILVMPRDVQALRGEVLGMRDKISAGHPNRSELFDVKHDRGGMVGVEFVTQYLVLCH FT AATHRVLVNNLGNIALLRLAGEAGLIPAPLALAAGDAYRTLRRAQHQLRLKGVDKARVP FT PGQLAAERATVCELWQTVLQDGTIAQAEVK" FT misc_feature complement(1330455..1330535) FT /note="Signal peptide predicted for BP1260 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.597 between residues 27 and 28" FT CDS join(1330602..1330730,1330730..1334185) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1261" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 43. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa hypothetical protein Pa4476 TR:Q9HVU5 FT (EMBL:AE004861) (1276 aa) fasta scores: E(): 6.7e-18, FT 24.63% id in 1315 aa, and to Xylella fastidiosa FT hypothetical protein Xf1126 TR:Q9PEA2 (EMBL:AE003948) (1251 FT aa) fasta scores: E(): 4.1e-14, 24.41% id in 1315 aa" FT /db_xref="PSEUDO:CAE41557.1" FT variation 1330728..1330730 FT /note="GCG(-) in pertussis; GCG(ATCG) in paraperussis and FT bronchiseptica" FT misc_feature 1331726..1331749 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1334252..1335508) FT /transl_table=11 FT /gene="rho" FT /gene_synonym="nitA" FT /gene_synonym="psuA" FT /gene_synonym="rnsC" FT /gene_synonym="tsu" FT /gene_synonym="sbaA" FT /locus_tag="BP1262" FT /product="transcription termination factor Rho" FT /note="Similar to Escherichia coli transcription FT termination factor Rho SW:RHO_ECOLI (P03002) (419 aa) fasta FT scores: E(): 9.4e-110, 70.09% id in 418 aa, and to FT Neisseria meningitidis transcription termination factor Rho FT or Nma0825 TR:Q9JVI6 (EMBL:AL162754) (419 aa) fasta scores: FT E(): 7.8e-115, 71.7% id in 417 aa" FT /protein_id="CAE41558.1" FT /translation="MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQ FT GEQIFGDGVLEVLPDGFGFLRSPDTSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTP FT KDGERYFALVKVDKVNGSPPEAIKHRIMFENLTPLHPNQVMRLERDIKSEENLTGRILD FT IFAPIGKGQRGLIVAPPKSGKTVMMQHVAHAITTNYPDAVLIVLLVDERPEEVTEMQRT FT VRGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPAS FT GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGN FT SEVHLERRLAEKRVYPSINLNKSGTRREELLIKPELLQKVWVLRKFIHDMDEIQSMEFI FT LDKMRATKTNAEFFDMMKK" FT misc_feature complement(1334411..1335379) FT /note="HMMPfam hit to PF00006, ATP synthase alpha/beta FT family, nucleotide-binding domain" FT misc_feature complement(1334954..1334977) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(1335113..1335142) FT /note="ScanRegExp hit to PS00215, Mitochondrial energy FT transfer proteins signature." FT CDS complement(1335621..1336046) FT /transl_table=11 FT /gene="trxA" FT /gene_synonym="tsnC" FT /gene_synonym="fipA" FT /locus_tag="BP1263" FT /product="thioredoxin 1" FT /note="Similar to Escherichia coli thioredoxin 1 TrxA or FT TsnC or FipA or B3781 SW:THIO_ECOLI (P00274) (108 aa) fasta FT scores: E(): 6.4e-28, 66.35% id in 107 aa, and to FT Pseudomonas aeruginosa thioredoxin TrxA or Trx or Pa5240 FT SW:THIO_PSEAE (Q9X2T1) (108 aa) fasta scores: E(): 7.2e-32, FT 75.92% id in 108 aa. Also similar to BP1713, 39.000% FT identity in 100 aa overlap." FT /protein_id="CAE41559.1" FT /translation="MTVVCFNPSYTSNKNSGRMLHARVAQRNPRITIMSEQIKNVSDAS FT FEADVLKSGQPVLVDYWAAWCGPCKMIAPILEEVAAEYAGRLTVAKLNVDENQDTAAKY FT GVRGIPTLMLFKDGQAAATKVGALSKSQLTAFLDGAL" FT misc_feature complement(1335633..1335944) FT /note="HMMPfam hit to PF00085, Thioredoxin" FT misc_feature complement(1335819..1335875) FT /note="ScanRegExp hit to PS00194, Thioredoxin family active FT site. Confirmed by InterPro eMOTIF pattern match." FT CDS 1336240..1338201 FT /transl_table=11 FT /gene="parE" FT /gene_synonym="nfxD" FT /locus_tag="BP1264" FT /product="topoisomerase IV subunit B" FT /EC_number="5.99.1.-" FT /note="Similar to Escherichia coli topoisomerase IV subunit FT B ParE or NfxD or B3030 SW:PARE_ECOLI (P20083) (630 aa) FT fasta scores: E(): 9.4e-84, 50.38% id in 653 aa, and to FT Neisseria meningitidis topoisomerase IV subunit B ParE or FT Nma1941 TR:Q9JT79 (EMBL:AL162757) (661 aa) fasta scores: FT E(): 4.5e-169, 65.24% id in 656 aa" FT /protein_id="CAE41560.1" FT /translation="MATPRYTEASIRVLKGLEPVRQRPGMYTRTENPLHIVQEVIDNAA FT DEALAGYGKQIQVTLHGDGSISVEDDGRGIPVGLHPEENAPVVELVFTRLHAGGKFDKQ FT GGGAYAFSGGLHGVGVSVTNALATRLEVVVWRDGAVHRLVFAGGDVIEALAPYPEGGRK FT KSGTRVRVWPDAKYFDSPAIPMAELTHLLRSKAVLLPGVKVSLVNEKTGDTRTWQYQEG FT LRGYLAEALAGAELMIPFFEGQQYAGADHDSFAEGEGAQWVVAWAEDGNVVRESYVNLI FT PTPAGGTHESGLREGLFGAVKGFAELHSLLPKGVKLLPEDVFTRASFVLSAKVLDPQFQ FT GQIKERLNSRDAVRLVGCFAKSALDLWLHSNVEYGKKLAELAIRQAQARQRSAQKVEKR FT KSSGVAVLPGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSW FT EVDRDRLFANNEIHDISVAIGVDPHGPGDEPDLSGLRYGRICILSDADVDGSHIQVLLL FT TLFYRHFPKLIEAGNVFVARPPLFRVDVPAQGKRPARKIYCLDAGELEAAQDKLRKEGV FT RESAWSVSRFKGLGEMNPEQLWETTMNPDTRRLLPVGYGDLTPGDTTRMFDMLMGKGES FT SQRRAWIEEKGNLAELDI" FT misc_feature 1336342..1336770 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature 1336813..1337349 FT /note="HMMPfam hit to PF00204, DNA topoisomerase II FT (N-terminal region)" FT misc_feature 1336951..1336998 FT /note="ScanRegExp hit to PS00225, Crystallins beta and FT gamma 'Greek key' motif signature." FT misc_feature 1337503..1337847 FT /note="HMMPfam hit to PF01751, Toprim domain" FT misc_feature 1337515..1337541 FT /note="ScanRegExp hit to PS00177, DNA topoisomerase II FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 1337959..1338168 FT /note="HMMPfam hit to PF00986, DNA gyrase B subunit, FT carboxyl terminus" FT CDS 1338201..1338809 FT /transl_table=11 FT /locus_tag="BP1265" FT /product="putative membrane protein" FT /note="Similar to Streptomyces coelicolor putative membrane FT protein Sc10h5.06 TR:O86498 (EMBL:AL031232) (207 aa) fasta FT scores: E(): 1.8, 32.14% id in 140 aa" FT /protein_id="CAE41561.1" FT /translation="MAQAPDSSVPVRMVVDLTVDDYAAFTAYAYQRPALRRRHASHLRF FT AVLLAAGLLAVILLRVWDGRQLDWGAALPAYAQALAVGLAVFALLAAGYEYALPRLARG FT NVRRALGRQPDNPFLGRHTLDFGPRGVDDAAAGASGTMPWEAVGQVEETASHLYLFISP FT LQGVIIPKRGQSADVLQAVRAQLRAHVPGAVLADAADKQ" FT misc_feature join(1338318..1338386,1338429..1338497) FT /note="2 probable transmembrane helices predicted for FT BP1265 by TMHMM2.0 at aa 40-62 and 77-99" FT CDS 1338827..1341142 FT /transl_table=11 FT /gene="parC" FT /locus_tag="BP1266" FT /product="topoisomerase IV subunit A" FT /EC_number="5.99.1.-" FT /note="Similar to Escherichia coli topoisomerase IV subunit FT A ParC or B3019 or Z4373 or Ecs3903 SW:PARC_ECOLI (P20082) FT (752 aa) fasta scores: E(): 5.8e-56, 44.28% id in 770 aa, FT and to Neisseria meningitidis topoisomerase IV subunit A FT Nmb1605 TR:Q9JYF6 (EMBL:AE002510) (767 aa) fasta scores: FT E(): 1.2e-152, 53.54% id in 762 aa. Also similar to BP0944, FT 37.268% identity (42.447% ungapped) in 754 aa overlap." FT /protein_id="CAE41562.1" FT /translation="MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALP FT DVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQ FT DFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYDGSQ FT QEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALV FT PGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQ FT KVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLDAVRDESGKDAAVRLVFEPKTSR FT VDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRH FT RLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAALMARFGLTERQAEDILEMRLR FT QLARLEGIKIEQELAGKREEQLRLQDLLDNPGSLKRLLIKEIEGDAKQYGDDRRTLIET FT AERAVLETKVVDEPVTVIVSQKGWLRARQGHGHDAGQFSFKQGDDLYGAFECRTTDTLI FT AVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLEAGTRIVHTIAAAPDSRWLLATRRGFG FT FAARLSDMSSRQRAGKQFITLEKGDELLRPVPLFEGATQLALLSAKGKFLVFDLDEVKS FT LSGGGRGTILMGLDTADKLDQTVPIGAAGLRAAGIYRNKQTEDILAGAALAPYVGKRAR FT KGRQLNVRPRQPVLSPVF" FT misc_feature 1338950..1340350 FT /note="HMMPfam hit to PF00521, DNA gyrase/topoisomerase IV, FT subunit A" FT CDS 1341145..1342359 FT /transl_table=11 FT /locus_tag="BP1267" FT /product="putative membrane protein" FT /note="Similar to Bacillus subtilis hypothetical 46.2 kDa FT protein in asnH-gntR intergenic region YxaH or S14H FT SW:YXAH_BACSU (P42107) (402 aa) fasta scores: E(): 8.4e-27, FT 31% id in 400 aa, and to Bacillus halodurans Bh3693 protein FT Bh3693 TR:Q9K6N5 (EMBL:AP001519) (405 aa) fasta scores: FT E(): 1.5e-26, 31.42% id in 401 aa" FT /protein_id="CAE41563.1" FT /translation="MNDGTAAQRLAHLDALRGFALFGILVVNIGVFASVYYGTGLPDPA FT FSRPLDQWVNVLVAVLFESKFYLLFSFLFGYSFTLQIDAAQRAGAAFAPRFLRRLAGLA FT VLGLAHAVLLYHGDILLTYAVLGALLLALRRTAPERALRWACWLALLAGLGWLALGVLS FT LMTPQDPATLALTQEDALAALQAYRGTIGTTIARHIHDLTHGVWMVVLLVQGPFVLAMF FT LAGLALGRRHALADPLAHPRLLRAVLAVGLPLGAAGAAVYAWSGLPGQPLGIDLIGLGA FT GMLTAPLLSASYAAALLLAMRRPAGARLARWLAPAGRMALTNYLLQSLVCAVLFTAWGL FT RWVGTLAPLSVLGLAVLVFALQLPWSAWWLRRHAYGPVEWLLRALTLARWPAWRIEPPP FT PAARR" FT misc_feature join(1341190..1341258,1341301..1341369,1341430..1341489, FT 1341499..1341555,1341574..1341642,1341763..1341831, FT 1341868..1341936,1341973..1342041,1342102..1342170, FT 1342183..1342251) FT /note="10 probable transmembrane helices predicted for FT BP1267 by TMHMM2.0 at aa 16-38, 53-75, 96-115, 119-137, FT 144-166, 207-229, 242-264, 277-299, 320-342 and 347-369" FT CDS complement(1342356..1343306) FT /transl_table=11 FT /locus_tag="BP1268" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41564.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT repeat_region 1342356..1342387 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1342356..1343408) FT misc_feature complement(1342392..1342925) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1342983..1343048) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1343377..1343408) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 1343405..1344064 FT /pseudo FT /transl_table=11 FT /locus_tag="BP1269" FT /product="C-terminal region of a putative membrane protein FT (Pseudogene)" FT /note="Pseudogene. This CDS is the C-terminal region of FT BP1288 which was disrupted by the insertion of IS481 FT element. Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0239 TR:Q9I6P9 (EMBL:AE004462) (292 aa) fasta FT scores: E(): 3e-23, 40.84% id in 213 aa, and to FT Agrobacterium tumefaciens Agr_c_357p TR:AAK86026 FT (EMBL:AE007961) (328 aa) fasta scores: E(): 3.5e-20, 35.06% FT id in 231 aa" FT misc_feature join(1343477..1343545,1343564..1343632,1343642..1343710, FT 1343729..1343797,1343825..1343884,1343897..1343965, FT 1343993..1344046) FT /note="7 probable transmembrane helices predicted for FT BP1269 by TMHMM2.0 at aa 52-74, 81-103, 107-129, 136-158, FT 168-187, 192-214 and 224-241" FT misc_feature 1343672..1344037 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT CDS complement(1344075..1344713) FT /transl_table=11 FT /locus_tag="BP1270" FT /product="putative glutathione S-transferase" FT /EC_number="2.5.1.18" FT /note="Similar to Pseudomonas spB4 glutathione FT S-transferase BphK TR:Q9RBS6 (EMBL:AJ245982) (196 aa) fasta FT scores: E(): 4.4e-08, 29.95% id in 207 aa, and to FT Escherichia coli O157:H7 putative transferase Ecs2058 FT TR:BAB35481 (EMBL:AP002557) (205 aa) fasta scores: E(): FT 7.2e-21, 38.04% id in 205 aa" FT /protein_id="CAE41566.1" FT /translation="MSTYELIGSRGCGSAIVEMALALANVPYTLTDLPYLKPGPGRDRL FT LSLNVTGQVPTLVLPDGEVMTESAAIVMHLHDVAPAAGLAPPPGSAERARFWNTLVRLV FT AVVYATFTYGDDPAKWTLPGDAAELLRTRVHDRRAQLWQEIERGAGAPHVLGRRFSALD FT LYVVVMTRWRPGPPWFQSVCPRLAAAARRAAEESNVAQVLRRHFDPPLE" FT misc_feature complement(1344489..1344704) FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain" FT CDS complement(join(1344710..1344850,1344852..1345076, FT 1345080..1345685)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1271" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have: 1) large FT deletion relative to parapertussis and bronchiseptica FT around codon 9, 2) an in-frame TGA stop codon at codon 203, FT and 3) a frameshift mutation following codon 277. The FT sequence has been checked and believed to be correct. FT Similar to Pseudomonas aeruginosa hypothetical protein FT Pa1112 TR:Q9I4M3 (EMBL:AE004541) (382 aa) fasta scores: FT E(): 9.9e-82, 67.5% id in 317 aa, and to Escherichia coli FT hypothetical protein YliI precursor YliI or B0837 FT SW:YLII_ECOLI (P75804) (371 aa) fasta scores: E(): 1.7e-75, FT 60.44% id in 316 aa" FT /db_xref="PSEUDO:CAE41567.1" FT variation complement(1344851) FT /note="G(-) in pertussis; G(TCGTGGCCGA) in parapertussis FT and bronchiseptica" FT variation complement(1345077..1345079) FT /note="TGA stop codonin pertussis; TGG in parapertussis and FT bronchiseptica" FT variation complement(1345659..1345661) FT /note="There is a large insertion in parapertussis and FT bronchiseptica relative to pertussis following this codon" FT CDS 1345693..1346049 FT /pseudo FT /transl_table=11 FT /locus_tag="BP1272" FT /product="putative aspartate racemase (Pseudogene)" FT /note="Pseudogene. This CDS appears to be missing the FT N-terminal region, this is probably due to the a large FT deletion immediately upstream. Similar to Shigella flexneri FT 2a hypothetical 25.4 kDa protein TR:AAL08433 FT (EMBL:AF326777) (229 aa) fasta scores: E(): 1.5e-07, 36.11% FT id in 108 aa, and to Pyrococcus abyssi aspartate racemase FT RacD-1 or pab0912 TR:Q9UYY1 (EMBL:AJ248287) (228 aa) fasta FT scores: E(): 9.8e-06, 31.42% id in 105 aa. Also similar to FT the C-terminus of BP0053, 55.140% identity (55.140% FT ungapped) in 107 aa overlap." FT /db_xref="PSEUDO:CAE41568.1" FT CDS complement(1346131..1346832) FT /transl_table=11 FT /gene="livF" FT /locus_tag="BP1273" FT /product="high-affinity branched-chain amino acid FT transport, ATP-binding protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport ATP-binding protein FT LivF or B3454 SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: FT E(): 6.7e-53, 67.81% id in 233 aa, and to Pseudomonas FT aeruginosa high-affinity branched-chain amino acid FT transport ATP-binding protein BraG or Pa1070 SW:BRAG_PSEAE FT (P21630) (233 aa) fasta scores: E(): 5.1e-54, 67.38% id in FT 233 aa" FT /protein_id="CAE41569.1" FT /translation="MLKLENIHTYYGAIQALNGVSVEVKQGEIVTLIGANGAGKTTLLM FT TVCGNPRAREGVITFEGKDITHAETHHIMRSGIAISPEGRRVFKDLTVAENLMMGGFFS FT RREEVDAGLEHVYTLFPRLKERAGQRAGTMSGGEQQMLAIGRALMTQPRLLLLDEPTLG FT LAPLIIAQIFDIIRTIREQGVTVFLVEQNANKALQVADRGYVLENGRVVLHDTGANLLV FT NGQVRKAYLGG" FT misc_feature complement(1346206..1346754) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(1346389..1346433) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT misc_feature complement(1346710..1346733) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1346833..1347600) FT /transl_table=11 FT /gene="livG" FT /locus_tag="BP1274" FT /product="high-affinity branched-chain amino acid FT transport, ATP-binding protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport ATP-binding protein FT LivG or B3455 or Z4825 or Ecs4302 SW:LIVG_ECOLI (P22730) FT (255 aa) fasta scores: E(): 2.1e-54, 60.63% id in 254 aa, FT and to Pseudomonas aeruginosa high-affinity branched-chain FT amino acid transport ATP-binding protein BraF or Pa1071 FT SW:BRAF_PSEAE (P21629) (255 aa) fasta scores: E(): 1.7e-55, FT 62.2% id in 254 aa" FT /protein_id="CAE41570.1" FT /translation="MSETLLKVSGLTMRFGGLLAVDSVAFEVRRDEVFAIIGPNGAGKT FT TVFNCVGGFYKPTAGEIVMDGKPITGMPSHKVARHGLVRTFQNVRLFKQLTVLENLLVA FT QHTQVEARLLPGLLKLKSYRQAEAEALTRAAQWLDFMGLREFANREAGNLAYGHQRRLE FT IARCMITKPRLLMLDEPAAGLNPQEKRDLQSLIDQLRREFGVAVLLIEHDMSLIMGISD FT RILVMEHGKPITTGIPDEVRNDPRVIKAYLGEE" FT misc_feature complement(1346911..1347510) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(1347466..1347489) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1347597..1348835) FT /transl_table=11 FT /gene="livM" FT /locus_tag="BP1275" FT /product="high-affinity branched-chain amino acid transport FT system, permease protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport system permease protein FT LivM or B3456 SW:LIVM_ECOLI (P22729) (425 aa) fasta scores: FT E(): 8e-84, 57.7% id in 409 aa, and to Pseudomonas FT aeruginosa high-affinity branched-chain amino acid FT transport system permease protein BraE or Pa1072 FT SW:BRAE_PSEAE (P21628) (417 aa) fasta scores: E(): 2.3e-88, FT 59.95% id in 422 aa" FT /protein_id="CAE41571.1" FT /translation="MTQQSPLKNATIAAVMTAVIVTPIFGLQLVRQGARTLMEPRWDLV FT ALACALVFAFQLLRPWISKPFKALKTGLPTLPSALARGHKWLVVLLIAVSVIWPFFSGR FT SSVDIATLVLIYVMLGLGLNIVVGFAGLLDLGFVGFYAVGAYTYALLYHWGGWSFWEAL FT PFSGAVAALFGFVLGFPVLRLRGDYLAIVTLGFGEIIRLLLINLNMLTGGPDGISGLPK FT PSVLGMEMARRASTEGGQTFHEIMGWTFQNQHMVIYLYLMALALALATLFVSTRLIRMP FT VGRAWEALREDEIACRSLGLNPTRIKLSAFTLGAMFAGFGGAFFAARQGMVNPESFTFI FT ESALILAIVVLGGMGSQIGVILAAILLTVLPELAREFAEYRMLMFGLVMVLMMMWRPQG FT LLPMKRPHVELRK" FT misc_feature complement(1347621..1348610) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT misc_feature complement(join(1347651..1347704,1347741..1347806, FT 1347852..1347917,1348002..1348067,1348221..1348271, FT 1348293..1348349,1348365..1348430,1348437..1348502, FT 1348533..1348583,1348647..1348703,1348749..1348814)) FT /note="11 probable transmembrane helices predicted for FT BP1275 by TMHMM2.0 at aa 7-29, 44-63, 84-101, 111-133, FT 135-157, 162-181, 188-205, 256-278, 306-328, 343-365 and FT 377-395" FT CDS complement(1348835..1349761) FT /transl_table=11 FT /gene="livH" FT /locus_tag="BP1276" FT /product="high-affinity branched-chain amino acid transport FT system, permease protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport system permease protein FT LivH or B3457 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: FT E(): 3.7e-61, 58.52% id in 311 aa, and to Salmonella FT typhimurium high-affinity branched-chain amino acid FT transport system permease protein LivH or LivA FT SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 7.7e-62, FT 59.67% id in 310 aa" FT /protein_id="CAE41572.1" FT /translation="MSDLIPQLTQQFFNGLSLGAIYALIAIGYTMVYGIIGMINFAHGE FT IYMIGAYVGLVTLTAIGTNSGLPLPFIIAAMLVVAIFVTGVYGYSVERVAYRPVRGSPR FT LVALISAIGMSIFLQNWVALGQGARDMAVPALVSGAVQFHMGSSFDVTVPYSRIMIIVV FT TVVLMVALTLFIKYSRMGRASRACSQDMHMANLLGIDTNRVISFTFVLGAMLAAVGGVL FT IAITIGKLNPFIGFLAGIKAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAAYISSQYKD FT IVAFALLVLILLFRPTGLLGKPEVEKV" FT misc_feature complement(1348850..1349740) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT misc_feature complement(join(1348865..1348915,1348967..1349032, FT 1349078..1349143,1349237..1349302,1349393..1349458, FT 1349495..1349560,1349573..1349629,1349651..1349716)) FT /note="8 probable transmembrane helices predicted for FT BP1276 by TMHMM2.0 at aa 15-37, 44-63, 67-89, 101-123, FT 153-175, 206-228, 243-265 and 282-299" FT CDS complement(1349864..1350979) FT /transl_table=11 FT /gene="livJ" FT /locus_tag="BP1277" FT /product="leu/ile/val-binding protein precursor" FT /note="Similar to Escherichia coli leu/ile/val-binding FT protein precursor LivJ or B3460 SW:LIVJ_ECOLI (P02917) (367 FT aa) fasta scores: E(): 7.4e-64, 48.05% id in 360 aa, and to FT Pseudomonas aeruginosa leucine-, isoleucine-, valine-, FT threonine-, and alanine-binding protein precursor BraC or FT Pa1074 SW:BRAC_PSEAE (P21175) (373 aa) fasta scores: E(): FT 1.6e-72, 52.02% id in 371 aa" FT /protein_id="CAE41573.1" FT /translation="MKFSQRFTPLAVALGALAFAGAVHAADTIKIGIPQPMTGPNTQYG FT DQIQAGALTAIETINAKGGVKGKKLEPILIDDGCEPKQAVPAANRVVNSGAKFAVAHAC FT SGVTVAAVNVYEQEGIVAITPGATSSLVTDTIKPHFFFRTIGRDDQQGPFAARYIANTI FT KPKKVAVLHDKQTYGSGVATQVKDTLERNKVNVALFEGINVGDSDYSAIITKLKSAGVD FT FVYFGGYHPELGLLLRQAREQGLNVQFMGPEGTANQDLVAIAGPAIDGLLVTLPSDFTK FT LPGNEGVVKAFQDAKRDPDGAFQMPAYAAVQLLAESINAVGEDPAKVADHLHKNTFNTA FT IGKVEYDAKGDLKDFEFAVFKWDKNGKKTQL" FT misc_feature complement(1349867..1350925) FT /note="HMMPfam hit to PF01094, Receptor family ligand FT binding region" FT misc_feature complement(1350893..1350958) FT /note="1 probable transmembrane helix predicted for BP1277 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(1350905..1350979) FT /note="Signal peptide predicted for BP1277 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 25 and 26" FT CDS complement(1350995..1351945) FT /transl_table=11 FT /locus_tag="BP1278" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41574.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI" FT repeat_region 1350995..1351026 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1350995..1352047) FT misc_feature complement(1351031..1351564) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1351622..1351687) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1352016..1352047) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1352299..1352880) FT /transl_table=11 FT /locus_tag="BP1279" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens Agr_l_2416p FT TR:AAK89778 (EMBL:AE008321) (245 aa) fasta scores: E(): FT 2.4e-23, 46.34% id in 205 aa, and to Rhizobium meliloti FT hypothetical transmembrane protein Smc00703 TR:CAC47248 FT (EMBL:AL591791) (212 aa) fasta scores: E(): 1.2e-21, 46.82% FT id in 205 aa" FT /protein_id="CAE41575.1" FT /translation="MSSASRRYEPLRSGPFLLAVFCMGLVVVGSNILVQVPLNDWLTWG FT GLSYPVAFLVTDVLNRRYGPDAARRVAWFGFAAALAVSVWVASPRIALASGLAYLCAQL FT IDIRVFDRLRDQRWWRAPLISGVIGAVADTAVFFSVAFAGSDTPWVTWMLGDLAIKLAV FT NISMLALFRALMWNLARPAEARPAQASTGR" FT misc_feature complement(1352344..1352850) FT /note="HMMPfam hit to PF02592, Uncharacterized ACR, YhhQ FT family COG1738" FT misc_feature complement(join(1352368..1352433,1352449..1352514, FT 1352602..1352667,1352776..1352841)) FT /note="4 probable transmembrane helices predicted for FT BP1279 by TMHMM2.0 at aa 13-35, 71-93, 122-144 and 149-171" FT misc_feature complement(1352794..1352880) FT /note="Signal peptide predicted for BP1279 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.617) with cleavage site FT probability 0.287 between residues 29 and 30" FT CDS complement(1352877..1353710) FT /transl_table=11 FT /gene="proC" FT /locus_tag="BP1280" FT /product="pyrroline-5-carboxylate reductase" FT /EC_number="1.5.1.2" FT /note="Similar to Pseudomonas aeruginosa FT pyrroline-5-carboxylate reductase ProC or Pa0393 FT SW:PROC_PSEAE (P22008) (272 aa) fasta scores: E(): 8.7e-36, FT 45.95% id in 272 aa, and to Xylella fastidiosa FT pyrroline-5-carboxylate reductase Xf2712 TR:Q9PA08 FT (EMBL:AE004077) (305 aa) fasta scores: E(): 1.8e-31, 43.49% FT id in 269 aa" FT /protein_id="CAE41576.1" FT /translation="MKNDLSIAFIGGGNMAAALASGLAGKVCPAANIHVVDINADSHAG FT WRARGMSAAAAPDATLAGCRVWVYAVKPQHMREAVAGTRPWLRPDTLIVSVAAGIRADT FT LAGWLGEPGQPWQRLVRCMPNTPALVGAGMTGLAALPGVTPQDRELAGQLLTSVGEVVW FT VDGDAGLDAVTALSGSGPAYVFLFIEALIAGGRAVGLTDEQARQLALGTLAGATRLAAQ FT SDEPPAVLRERVTSKGGTTAAALDVYAQGDFAGLVERAMQAAARRSRELAEEFGR" FT misc_feature complement(1352943..1353698) FT /note="HMMPfam hit to PF01089, Delta FT 1-pyrroline-5-carboxylate reductase" FT misc_feature complement(1353651..1353710) FT /note="Signal peptide predicted for BP1280 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.967 between residues 20 and 21" FT CDS 1353921..1355234 FT /transl_table=11 FT /gene="ugpB" FT /locus_tag="BP1281" FT /product="glycerol-3-phosphate-binding periplasmic protein FT precursor" FT /note="Similar to Escherichia coli FT glycerol-3-phosphate-binding periplasmic protein precursor FT UgpB or B3453 SW:UGPB_ECOLI (P10904) (438 aa) fasta scores: FT E(): 4.6e-91, 54.21% id in 439 aa, and to Agrobacterium FT tumefaciens Agr_l_3248p TR:AAK90201 (EMBL:AE008365) (439 FT aa) fasta scores: E(): 1.1e-78, 48.02% id in 431 aa" FT /protein_id="CAE41577.1" FT /translation="MRSQRLALTFAAVMAAFAGASAHAATEIQFWHSMEGALGDRVNGL FT VEEFNKQNADYQIKAVYKGNYGESMNAGIAAFRAGNAPDILQVFEVGTATMMYAKGAIK FT PVQQMSEEVGDPIDPKQFIGAVAGYYSSPEGKLVSMPFNSSTVVFYYNKDAFKKAGLDA FT DKPPKTWEELAAVGQKLKAAGQECGYTTSWPSWVQLETFSAWHNVPYATKDNGFAGLDA FT RLAVDTPLHVRHLDNLAKLAKEGIFMYGGRGDEPNSLFISGKCAMITGSSGLRANIAKN FT AKFEFGTSTLPYYSDVQGAPQNTIIGGASLWVFANKKPETYKGVTKFFKFLASPEIAAR FT WHQQTGYVPVTKAAYELTQKQGFYDKNPGTDVGVKQLNVETTAQSRGLRLGYLPQIREI FT EDAEIERIVAGKVPAKDGLQSIVKRGNELLEKFEKSVK" FT misc_feature 1353921..1353992 FT /note="Signal peptide predicted for BP1281 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 24 and 25" FT misc_feature 1353936..1353995 FT /note="1 probable transmembrane helix predicted for BP1281 FT by TMHMM2.0 at aa 34-53" FT misc_feature 1354320..1355201 FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein" FT misc_feature 1354341..1354394 FT /note="ScanRegExp hit to PS01037, Bacterial extracellular FT solute-binding proteins, family 1 signature." FT misc_feature 1354512..1354541 FT /note="ScanRegExp hit to PS00019, Actinin-type FT actin-binding domain signature 1." FT CDS 1355411..1356292 FT /transl_table=11 FT /gene="ugpA" FT /locus_tag="BP1282" FT /product="sn-glycerol-3-phosphate transport system, FT permease protein" FT /note="Similar to Escherichia coli sn-glycerol-3-phosphate FT transport system permease protein UgpA or B3452 FT SW:UGPA_ECOLI (P10905) (295 aa) fasta scores: E(): 2.1e-66, FT 59.65% id in 290 aa, and to Rhizobium meliloti probable FT glycerol-3-phosphate ABC transporter permease protein FT TR:CAC48803 (EMBL:AL603643) (293 aa) fasta scores: E(): FT 2e-74, 63.91% id in 291 aa" FT /protein_id="CAE41578.1" FT /translation="MEKRVVFGHKTLPYLLLAPQIIITIVFFFLPAGQAMWQSLRLEDA FT FGLSSEFVGLANFADLFSQQSYLDSFRVTAVFSALVAFVGLAVSLLLAVMADRVLRGAG FT LYKTLLIWPYAVAPAVVGVLWLFLFSPSVGILAVALNGMGVNWNPRLDGDQALILVLIA FT AVWKQISYNFLFFLAGLQSIPRSLIEAAAIDGASPARRFWTIVFPLLSPTTFFLLVVNI FT IYAFFDTFAVIDTTTQGGPGTATSILVYKVYSDGFRGLDLGSSAAQSVVLMAIVVALTV FT LQFRYIDRKVQY" FT misc_feature join(1355441..1355509,1355630..1355698,1355735..1355830, FT 1355873..1355941,1356023..1356091,1356203..1356271) FT /note="6 probable transmembrane helices predicted for FT BP1282 by TMHMM2.0 at aa 55-77, 118-140, 153-184, 199-221, FT 249-271 and 309-331" FT misc_feature 1355945..1356172 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 1355948..1356034 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 1356312..1357163 FT /transl_table=11 FT /gene="ugpE" FT /locus_tag="BP1283" FT /product="sn-glycerol-3-phosphate transport system permease FT protein" FT /note="Similar to Escherichia coli sn-glycerol-3-phosphate FT transport system permease protein UgpE or B3451 FT SW:UGPE_ECOLI (P10906) (281 aa) fasta scores: E(): 2.1e-69, FT 61.48% id in 283 aa, and to Rhizobium meliloti probable FT glycerol-3-phosphate ABC transporter permease protein FT TR:CAC48804 (EMBL:AL603643) (282 aa) fasta scores: E(): FT 4.1e-70, 61.4% id in 285 aa" FT /protein_id="CAE41579.1" FT /translation="MVERRPWLDILAHFILLCGVALVAFPIYVTFVASTQTAQEVASAP FT MSLIPGKHFVDNYMQALFAGSGGGSYGAPVGRMMYVSLIMALAISLGKIAISLLSAFAV FT VYFRFPGRMFFFWMIFVTLMLPVEVRIAPTYKVVADLGLLNSYAGLTLPLIASATATFL FT FRQFFLTVPDELVEAARIDGAGPMRFFRDVLLPLSRTSIAALFVIQFIYGWNQYLWPLL FT ITTQEDMYPVVIGIKRMISGGDSVTEWNITMATAILAMIPPALVVILMQKWFVKGLVDT FT EK" FT misc_feature 1356312..1356425 FT /note="Signal peptide predicted for BP1283 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.750) with cleavage site FT probability 0.409 between residues 38 and 39" FT misc_feature join(1356330..1356398,1356561..1356629,1356648..1356707, FT 1356750..1356818,1356879..1356947,1357050..1357118) FT /note="6 probable transmembrane helices predicted for FT BP1283 by TMHMM2.0 at aa 7-29, 84-106, 113-132, 147-169, FT 190-212 and 247-269" FT misc_feature 1356810..1357046 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 1356813..1356899 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 1357216..1358304 FT /transl_table=11 FT /gene="ugpC" FT /locus_tag="BP1284" FT /product="sn-glycerol-3-phosphate transport ATP-binding FT protein" FT /note="Similar to Escherichia coli sn-glycerol-3-phosphate FT transport ATP-binding protein UgpC or B3450 SW:UGPC_ECOLI FT (P10907) (356 aa) fasta scores: E(): 1.4e-64, 60.05% id in FT 363 aa, and to Rhizobium meliloti putative sugar uptake ABC FT transporter ATP-binding protein Smb20661 TR:CAC49768 FT (EMBL:AL603646) (355 aa) fasta scores: E(): 1.8e-64, 57.18% FT id in 362 aa" FT /protein_id="CAE41580.1" FT /translation="MATLSFRNVKKTYAGNVPVIHGIDMDVADGEFIVIVGPSGCGKST FT LMRMVAGLETVTEGEILIDDKVVNTLEPAERDIAMVFQNYALYPHMSVFDNMAYGLKIR FT RLPKDEIRKRVEAAAQILELGKLLDRRPRALSGGQRQRVAMGRAIVREPKVFLFDEPLS FT NLDAKLRVAMRLEILKLHRRLNTTSLYVTHDQVEAMTLAHRMVVMYQGVPEQIGTPMEV FT FEKPASTFVAGFIGSPPMNLLEVAVGGDGIVHTSDGIALDISPLAVPQQVRGRKVVMGL FT RPEHMLLNAQGLAAEIEMVETLGSEQLVHGRCGKHMVVVRCSTRQFSETPARVGDTLTI FT GPDGRHPLHWFEADTGRRVEGL" FT misc_feature 1357303..1357848 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 1357324..1357347 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 1357618..1357662 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS complement(1358415..1359542) FT /transl_table=11 FT /gene="livJ" FT /locus_tag="BP1285" FT /product="leu/ile/val-binding protein precursor" FT /note="Similar to Escherichia coli leu/ile/val-binding FT protein precursor LivJ or B3460 SW:LIVJ_ECOLI (P02917) (367 FT aa) fasta scores: E(): 3.8e-67, 49.86% id in 361 aa, and to FT Pseudomonas aeruginosa leucine-, isoleucine-, valine-, FT threonine-, and alanine-binding protein precursor BraC or FT Pa1074 SW:BRAC_PSEAE (P21175) (373 aa) fasta scores: E(): FT 8.8e-78, 58.1% id in 370 aa" FT /protein_id="CAE41581.1" FT /translation="MNKAFRFTPVIAALGMAAGIAMSAGAHAQTIKIAVVGPTTGQVTQ FT YGDMVREGVDTAIERINATGGVNGKKLEAVVIDDGCEPKQGPVAANRVVNDKIGFVVGH FT VCSGATIAATEIYNNEGVVMVTPSATSPAVTDGKNYEFIFRTIGRDDQQGPAAAKFILE FT KIKPKTVAVIHDKQSYGQGIATAVKDTLEKNGTKVVIFEGINAGDSDYSAVITKLKAAK FT VDFVYYGGYHPEMGLLLRQGAEQGLDAKFMGPEGVGNPDINAIAGPAVEGMLLTLPADF FT TLNPVNAEIVKAFKDKKRDASGAFQLTAYAATQVIADGIKGAGSEDPTKVAQYLHANSF FT QTPIGKTSWNKQGDLNAFEFEVFTWHKDGSKTSYK" FT misc_feature complement(1358421..1359374) FT /note="HMMPfam hit to PF01094, Receptor family ligand FT binding region" FT misc_feature complement(1359459..1359542) FT /note="Signal peptide predicted for BP1285 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 28 and 29" FT CDS 1359777..1360388 FT /transl_table=11 FT /locus_tag="BP1286" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc2185 TR:Q9A6A9 (EMBL:AE005890) (207 aa) fasta FT scores: E(): 9.9e-30, 49.24% id in 199 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa0201 FT TR:Q9I6T7 (EMBL:AE004458) (193 aa) fasta scores: E(): FT 4.3e-29, 48.04% id in 179 aa" FT /protein_id="CAE41582.1" FT /translation="MRLQPIIVPGWQGSGPGHWQTHWSRTLPHAVRLQQRDWHQPQRAE FT WVAALAAAVDAAPTPVLLVAHSLGCLVSAALPIALRAKVAGALLVAPADVERPGAPAAI FT AAFGPVPRQSLPYQSVVIASDDDPYCRLERARQFAQDWGSRLVVLQGAGHINADSQLGA FT WPQGLKQLAALRRRACWRISPPAEKIPPVPAGIMAPPRYG" FT repeat_region 1360385..1360416 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1360385..1361437 FT CDS 1360487..1361437 FT /transl_table=11 FT /locus_tag="BP1287" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41583.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 1360745..1360810 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1360868..1361401 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1361406..1361437) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1361429..1361662) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1288" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP1269. Similar to Rhizobium loti Mlr5364 protein Mlr5364 FT TR:Q98BZ5 (EMBL:AP003006) (307 aa) fasta scores: E(): 0.18, FT 31.74% id in 63 aa" FT misc_feature complement(join(1361462..1361527,1361573..1361623)) FT /note="2 probable transmembrane helices predicted for FT BP1288 by TMHMM2.0 at aa 13-30 and 45-67" FT misc_feature complement(1361564..1361662) FT /note="Signal peptide predicted for BP1288 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.888) with cleavage site FT probability 0.675 between residues 33 and 34" FT CDS complement(1361659..1362036) FT /transl_table=11 FT /locus_tag="BP1289" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0379 TR:Q9I6B6 (EMBL:AE004475) (125 aa) fasta FT scores: E(): 8.1e-17, 52.1% id in 119 aa, and to Bacillus FT subtilis hypothetical 12.0 kDa protein in ung-rocA FT intergenic region YwdK or Ipa-61D SW:YWDK_BACSU (P39619) FT (113 aa) fasta scores: E(): 2e-15, 54.45% id in 101 aa" FT /protein_id="CAE41585.1" FT /translation="MTDRQLIVLAALNIMVAVGAGAFGAHGLRRVVDPTLLAIWHTGVL FT YHLIHALGLFVVALLGARFGSPLLSMAGLVMFIGILLFCGSLYVLVLTGTRWLGAVTPL FT GGVAFLAAWAMVAWAAWRAPA" FT misc_feature complement(join(1361671..1361736,1361767..1361832, FT 1361854..1361919,1361950..1362015)) FT /note="4 probable transmembrane helices predicted for FT BP1289 by TMHMM2.0 at aa 7-29, 39-61, 68-90 and 100-122" FT misc_feature complement(1361977..1362036) FT /note="Signal peptide predicted for BP1289 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.888) with cleavage site FT probability 0.250 between residues 20 and 21" FT CDS 1362184..1362681 FT /transl_table=11 FT /locus_tag="BP1290" FT /product="conserved hypothetical protein" FT /note="Similar to Yersinia enterocolitica hypothetical 16.3 FT kDa protein TR:Q9F4G7 (EMBL:AY008264) (148 aa) fasta FT scores: E(): 5.1e-08, 31.75% id in 148 aa, and to Rhizobium FT meliloti hypothetical protein Smb20696 TR:CAC49803 FT (EMBL:AL603647) (161 aa) fasta scores: E(): 0.0009, 31.35% FT id in 118 aa" FT /protein_id="CAE41586.1" FT /translation="MSIAIAEKSPARGAPKRRAPAARKRALEEEARVDSFADLVDSPLI FT AMAHGVQRGLSPRLLDDAADYLQVPKSEIMAITEVKAASLSRWMRDGQALPLGESDRLA FT RVARVTKVARQVLGGDAEAVQWLNTPVPALGNVKPLSLLTSDASSRIVEDTLARAAAGV FT YA" FT CDS 1362678..1363205 FT /transl_table=11 FT /locus_tag="BP1291" FT /product="conserved hypothetical protein" FT /note="Similar to Yersinia enterocolitica hypothetical 17.2 FT kDa protein TR:Q9F4G8 (EMBL:AY008264) (152 aa) fasta FT scores: E(): 0.00042, 31.32% id in 166 aa, and to Rhizobium FT loti Mlr9079 protein Mlr9079 TR:Q982G8 (EMBL:AP003015) (160 FT aa) fasta scores: E(): 0.0017, 32.12% id in 165 aa" FT /protein_id="CAE41587.1" FT /translation="MSHVSLWRIATTAGKYRADDLSGAGAGAAAVGGRYNSPGTAVVYA FT SSCVALAVLETVVHFAAPATAQANRYLIEIVVPRAVYEARQVLEVDALHKRHPFWDAVP FT FAEVSQRIGDAWVRGNGSALLQLPSAIVPCRGVPDCNLLINPQHPDAASVRVARREKFI FT YDPRLAPGGPRQ" FT CDS 1363339..1364154 FT /transl_table=11 FT /locus_tag="BP1292" FT /product="putative exported protein" FT /note="Similar to Escherichia coli putative lipoprotein FT YaeC precursor YaeC or B0197 SW:YAEC_ECOLI (P28635) (271 FT aa) fasta scores: E(): 9.1e-26, 36.53% id in 260 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa2349 FT TR:Q9I1C9 (EMBL:AE004661) (264 aa) fasta scores: E(): FT 3e-36, 44.09% id in 254 aa" FT /protein_id="CAE41588.1" FT /translation="MRIRSGWMQWLGALALWCAAAGAGAAQQAPLRIGVIASVANEATE FT IAIAQARAQGLEVKLIEFNDWVMPNIAAAEGSIDANFFQHEPFLQLFNRSRGTHLTPIA FT YGYSTTIGLFSKKLKKGDAIPQGATIAVPNDPVNTGRALQLLASIGLIGLKPGAGHQAT FT LQDVTDNPRRIKLVQLEGSQSARTFDDVTASVTYTTFAKHAGIDEKDGLAFDNTDPETV FT RRYAIRWVATPERAQDPRLLAFIRIYQSSPEVKATLRRLYGELIDFPWE" FT misc_feature 1363339..1363404 FT /note="Signal peptide predicted for BP1292 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.535 between residues 23 and 24" FT CDS complement(1364167..1365348) FT /transl_table=11 FT /gene="lldD" FT /gene_synonym="lctD" FT /locus_tag="BP1293" FT /product="putative L-lactate dehydrogenase" FT /EC_number="1.1.2.3" FT /note="Similar to Escherichia coli L-lactate dehydrogenase FT LldD or LctD or B3605 SW:LLDD_ECOLI (P33232) (396 aa) fasta FT scores: E(): 2.2e-37, 38.16% id in 359 aa, and to FT Streptomyces rishiriensis dehydrogenase CumR TR:Q9F8T4 FT (EMBL:AF235050) (389 aa) fasta scores: E(): 6.8e-42, 43.01% FT id in 365 aa" FT /protein_id="CAE41589.1" FT /translation="MRPGHRRRFWSSHVVFRTAPVRRLRRPRRRLPRPIFGYVAGAAED FT NQAHDDNRRAFAEYGFLPRVLVDVSARHTRTELFGQEWAAPFGVAPMGISALSAYRGDI FT VLARAARAAGIPAIMSGSSLIPLEEVARQAPGTWFQAYLPGDPGRIDALVERVARAGYW FT TLVLTVDIPVSANRENNVRTGFSTPLKPGLRLAWDGLSRPRWLAGTFLRTLLAHGMPHF FT ENSFATRGAPILSANVLRDFSARDHLDWSHVQRIRRSWRGELVIKGIMHPRDAALARAH FT GADGIIVSNHGGRQLDGACAPLRVLPDIAEAAGAMAVMMDSGIRRGGDVLKALALGARF FT VFLGRPFNYAAAVGGEAGVAHAIGLLREEIDRNMAMLGVTRCTAMAPGLLRRL" FT misc_feature complement(1364173..1365270) FT /note="HMMPfam hit to PF01070, FMN-dependent dehydrogenase" FT misc_feature complement(1364464..1364484) FT /note="ScanRegExp hit to PS00557, FMN-dependent FT alpha-hydroxy acid dehydrogenases active site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(1365396..1366289) FT /transl_table=11 FT /gene="psd" FT /locus_tag="BP1294" FT /product="phosphatidylserine decarboxylase proenzyme" FT /EC_number="4.1.1.65" FT /note="Similar to Escherichia coli, and phosphatidylserine FT decarboxylase proenzyme Psd or B4160 or Z5766 or Ecs5139 FT SW:DPSD_ECOLI (P10740) (322 aa) fasta scores: E(): 2.2e-51, FT 49.82% id in 291 aa, and to Pseudomonas aeruginosa FT phosphatidylserine decarboxylase Psd or Pa4957 TR:Q9HUK8 FT (EMBL:AE004908) (289 aa) fasta scores: E(): 1e-84, 73.35% FT id in 289 aa" FT /protein_id="CAE41590.1" FT /translation="MPFKDQLFLASQYLAPHHLVSRLMGRVADCRAPEIKNRMIARFVR FT RYNVDMSEALVEDPLAYASFNDFFTRALKPDARPLDDEPGAALCPADGAISQIGAIDNG FT RIFQAKGHSFGLTDLLGGDAERAAPFAGGQFATIYLSPRDYHRVHMPLAGTLREMVHVP FT GRLFSVNPLTARSVPELFARNERVACLFDTEHGPMALVLVGAMIVASIETVWAGLVTPH FT KRQVRSVRYDAAARAPIHLDKGAEMGRFKLGSTVIVLFGPKRLRWLDLPSVRGPVRMGE FT TLALPASTAISFPESE" FT misc_feature complement(1365435..1366097) FT /note="HMMPfam hit to PF02666, Phosphatidylserine FT decarboxylase" FT CDS complement(1366416..1366886) FT /transl_table=11 FT /locus_tag="BP1295" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE41591.1" FT /translation="MTESARPTPATILLYTEEQRGNQWVESIVVGMLSDISGADKLVVI FT KDPHSGIKFVYRVEHDCNNLDAAAITELDETHFDGKRTTAINGMNYRMGNPDSAMKLLR FT AKPRWIQDKGAVLSVLLRNAAARSTSFVSRRIDRERLTRVPADAPVERLPQP" FT CDS complement(1367012..1367839) FT /transl_table=11 FT /locus_tag="BP1296" FT /product="putative lipoprotein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4972 TR:Q9HUJ3 (EMBL:AE004910) (248 aa) fasta FT scores: E(): 1.5e-25, 37.61% id in 226 aa, and to FT Streptomyces coelicolor hypothetical 23.4 kDa protein FT Sc5c7.29 TR:O86726 (EMBL:AL031515) (226 aa) fasta scores: FT E(): 3.3, 29% id in 131 aa" FT /protein_id="CAE41592.1" FT /translation="MKYRATALPPPRLKLLCAAGALALLAACGSAPPADITLAGAAPAA FT AGAEPATIGDVRTERIQWASAKPGCTGECPRVEIDSVSFPGIPALSELVDRQLAAMTGV FT DQNLRGRYQTLSEYTQYFWKTAQARDATYFKASVKDVVGDIVAVELGTTQFLTGAAHGI FT PATHYLNWQRSQGRPLTLDEVLIPSRKAEYVVAMREAHQRWLAANEDAQHDRAAYDRMW FT PFQETTNFALTRQGLVVKYDAYTIAPYSHGQPEILIPYERLRGVLRPEFIPAG" FT misc_feature complement(1367702..1367839) FT /note="Signal peptide predicted for BP1296 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.346 between residues 46 and 47" FT misc_feature complement(1367756..1367788) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(1367868..1368644) FT /transl_table=11 FT /locus_tag="BP1297" FT /product="putative lipoate-protein ligase A" FT /note="Similar to Pyrococcus abyssi lipoate-protein ligase FT A related Pab1916 TR:Q9V0V8 (EMBL:AJ248285) (249 aa) fasta FT scores: E(): 2e-24, 37.02% id in 235 aa, and to Pyrococcus FT horikoshii 249aa long hypothetical lipoate protein ligase FT Ph1487 TR:O59156 (EMBL:AP000006) (249 aa) fasta scores: FT E(): 5e-23, 34.89% id in 235 aa" FT /protein_id="CAE41593.1" FT /translation="MNRTAWTDYDWQLIHPGPLPPALHMALDAAITDEVGAGQRPPTLR FT IWEWSQPAVIIGRFQSLRNEVDPDGARRHGVTVVRRVSGGGAMFVEPGNTITYSLSVPQ FT ALVAGMSFQESYAFLDAWVIRALHELGIKAWYQPLNDIASDAGKIGGAAQARRAGAVLH FT HVTMSYDIDADKMVEVLRIGREKLSDKGTTSARKRVDPLRSQTGLARDTIIERMLQTFA FT GMCRLTPAEIGAATLQAAQRQAEEKFSSPEWTALVP" FT misc_feature complement(1367880..1368572) FT /note="HMMPfam hit to PF02539, Lipoate-protein ligase A" FT CDS complement(1368641..1368934) FT /transl_table=11 FT /locus_tag="BP1298" FT /product="conserved hypothetical protein" FT /note="Similar to Halobacterium sp Vng6255C TR:Q9HHS3 FT (EMBL:AE005157) (89 aa) fasta scores: E(): 5.3e-08, 40.21% FT id in 92 aa" FT /protein_id="CAE41594.1" FT /translation="MKGIPAMHGEYKVPGGKLVVIDLEVAQGRLRQVRLSGDFFLEPPE FT ALEAINRGLDGLPADAGAEGIAQAVRAALPAEAELFGFSPEAVAVVVQRALS" FT CDS complement(1368931..1369395) FT /transl_table=11 FT /locus_tag="BP1299" FT /product="putative acetyltransferase" FT /note="Similar to Streptomyces griseus regulatory protein FT for C-P lyase PhnO-like TR:Q54244 (EMBL:D29961) (150 aa) FT fasta scores: E(): 7.3e-26, 52% id in 150 aa, and to FT Rhizobium loti probable transcriptional regulator Mll1819 FT TR:Q98JR4 (EMBL:AP002998) (150 aa) fasta scores: E(): FT 4.9e-35, 61.74% id in 149 aa" FT /protein_id="CAE41595.1" FT /translation="MTATLSFRRAAATDLPAIIALLADDAFGQQREDPTMPPQPAYLAA FT FGAIDRDPNQLLAVVERAGQIIGCLQLSFIPGLSRRGLWRGQIESVRVAASERGAGTGR FT ALFEWAIAQCRDKGCGLVQLTTDKQRADARRFYESLGFKATHEGMKLDLA" FT misc_feature complement(1368967..1369224) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT CDS complement(1369407..1370108) FT /transl_table=11 FT /locus_tag="BP1300" FT /product="putative glutathione transferase" FT /EC_number="2.5.1.18" FT /note="Similar to Zea mays glutathione transferase III FT Gst3B TR:Q9SM20 (EMBL:AJ010296) (221 aa) fasta scores: E(): FT 1.2e-10, 30.28% id in 208 aa, and to Pseudomonas aeruginosa FT probable glutathione S-transferase Pa1033 TR:Q9I4U1 FT (EMBL:AE004536) (213 aa) fasta scores: E(): 2.2e-68, 77.61% FT id in 210 aa" FT /protein_id="CAE41596.1" FT /translation="MIDLYYWTTPNGHKITLFLEETGLPYRIHPVNISKGEQFQPEFLA FT IAPNNRIPAIVDQAPADGGTPIPLFESGAILLYLAEKTGQFIPADLRGRADVLQWLFWQ FT MGGLGPMAGQNHHFSAYAPERIPYAIERYVKETNRLYGVLDRQLAQREFVAGDYSIADM FT AAYPWIVPHERQGQDLNEFPNLKRWFEAIGARPATQRAYALADRINTKPSVDTEESRRV FT LFGQTAANVRR" FT misc_feature complement(1369521..1370099) FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain" FT CDS complement(1370218..1370718) FT /transl_table=11 FT /locus_tag="BP1301" FT /product="glutathione peroxidase" FT /EC_number="1.11.1.9" FT /note="Similar to Schizosaccharomyces pombe glutathione FT peroxidase Gpx1 or Spbc32f12.03C SW:GSHJ_SCHPO (O59858) FT (158 aa) fasta scores: E(): 1.7e-32, 50.96% id in 155 aa, FT and to Pseudomonas aeruginosa glutathione peroxidase Pa2826 FT TR:Q9I017 (EMBL:AE004709) (161 aa) fasta scores: E(): FT 1.3e-39, 61.68% id in 154 aa" FT /protein_id="CAE41597.1" FT /translation="MNTMYDFSAPTITGAERALADFRGQVALVVNVASRCGFTPQYSGL FT EELYRSYRNEGFVVLGFPCNQFGRQEPGDEAAIAQFCETQYAISFPLFAKIDVNGAHAH FT PLYRWLKARKPGLLGTRAIKWNFTKFLVGRDGLPLRRYAPAHTPESLRHDIARACAAPG FT PTP" FT misc_feature complement(1370386..1370712) FT /note="HMMPfam hit to PF00255, Glutathione peroxidase" FT misc_feature complement(1370518..1370541) FT /note="ScanRegExp hit to PS00763, Glutathione peroxidases FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(1370801..1371979) FT /transl_table=11 FT /locus_tag="BP1302" FT /product="putative exported protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc1979 TR:Q9A6V4 (EMBL:AE005871) (407 aa) fasta FT scores: E(): 1.1e-29, 32.41% id in 398 aa, and to FT Agrobacterium tumefaciens Agr_l_3459p TR:AAK90303 FT (EMBL:AE008375) (407 aa) fasta scores: E(): 2.1e-27, 32.67% FT id in 407 aa" FT /protein_id="CAE41598.1" FT /translation="MHRRQLLKLAAAAPLTLYGTRLLAAGPPDTRLLVVFMRGAYDAAS FT LLVPTTSEFYYESRPHIAIARDAAAALSDGWALHPAVKDSLLPFYQRGELAFVPFAGTD FT DASRSHFETQNRIELGRAGGSGAAPASGFLNRLAAQLDGKAGRPAAFTEDVPQIFRGQA FT RVPNIDLGGAKRKSRLTADSSSAIAQMYQGTGLDASVNEGLAAMGQARAALEAEMREAN FT GGAGNTEKLEQEARRIGTFMAERYNLGFVDVGGWDTHVGQGAANGVLATKLGQLGRALA FT AYAQAMGPAWRHTTVVVISEFGRTLRENGNKGTDHGHGSVYWVLGGGVRGGRIAGEQVA FT VKRDTLFQDRDYPVLTDYRALFAGLFGRLYGLDAQRLQAVFPGARPLDLKLV" FT misc_feature complement(1371908..1371979) FT /note="Signal peptide predicted for BP1302 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.971 between residues 24 and 25" FT CDS complement(join(1372003..1372416,1372415..1373386)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1303" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 324. The frameshift occurs as a FT result of a large deletion, relative to parapertussis. The FT sequence has been checked and believed to be correct. FT Similar to Caulobacter crescentus hypothetical protein FT Cc1978 TR:Q9A6V5 (EMBL:AE005871) (482 aa) fasta scores: FT E(): 0.0001, 30.08% id in 502 aa, and to Rhizobium loti FT Mll5453 protein Mll5453 TR:Q98BS0 (EMBL:AP003006) (508 aa) FT fasta scores: E(): 0.003, 31.4% id in 535 aa" FT /db_xref="PSEUDO:CAE41599.1" FT variation complement(1372415) FT /note="large deletion in pertussis relative to FT parapertussis" FT CDS 1373607..1373942 FT /transl_table=11 FT /locus_tag="BP1304" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0015 TR:Q9I7B1 (EMBL:AE004441) (105 aa) fasta FT scores: E(): 2e-17, 55.44% id in 101 aa, and to FT Agrobacterium tumefaciens Agr_l_275p TR:AAK88708 FT (EMBL:AE008211) (129 aa) fasta scores: E(): 1.7e-10, 40.4% FT id in 99 aa" FT /protein_id="CAE41600.1" FT /translation="MQAMTERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAA FT LDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR FT EDAQHGG" FT misc_feature 1373661..1373762 FT /note="HMMPfam hit to PF00515, TPR Domain" FT misc_feature 1373763..1373864 FT /note="HMMPfam hit to PF00515, TPR Domain" FT misc_feature 1373769..1373792 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 1374130..1375578 FT /transl_table=11 FT /locus_tag="BP1305" FT /product="conserved hypothetical protein" FT /note="Its C-terminal region is similar to hypothetical FT racemases from a wide range of bacteria. No significant FT similarity over the entire length of the CDS." FT /protein_id="CAE41601.1" FT /translation="MGNLKDLHPPVARGQAHTAKGARVALQNLWGAAGLPDEALDHVEL FT HGAEPVLPSSFAVGTAAQASIAAAALAAAEIWHLRGGQRQRVAVDMRHAAQECRSYFKI FT NGVTPNIWDKITGVYPCGDGGWVRIHANFPHHRDGALALLGCPPGEAATREMVERALAR FT WRAGDFEQVAADAGMVVAAMRSFDQWDRHPQGLATASQPVVRIERIDNADPRPLPKYGH FT EATPLQDIRVLDLTRIIAGPVCGRALAAYGADVMLINLPHLPNIDNIIDTSRGKLSVHA FT DLETADGRIALGNLLRSAHVFVQGYRPGGLQALGFGPEDAARIRPGIVYVSLSAYGDSG FT PWAGRRGFDSLVQTATGFNHAEAQAAGQEAPKAMPVQILDHASGYLMAFGALAALARQR FT IEGGSWHVRVSLASTARWLRELGRVPDGLACPMPPIEELLYAEESGFGELTAVRHAAQF FT SLTPARWTRPAMPPGSHPTVWPFR" FT misc_feature 1374964..1375476 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS 1375615..1375980 FT /transl_table=11 FT /gene="arsC" FT /gene_synonym="arsG" FT /locus_tag="BP1306" FT /product="putative arsenate reductase" FT /EC_number="1.20.4.1" FT /note="Similar to Escherichia coli arsenate reductase ArsC FT or ArsG or B3503 SW:ARSC_ECOLI (P37311) (141 aa) fasta FT scores: E(): 9.4e-21, 57.52% id in 113 aa, and to Rhizobium FT meliloti hypothetical arsenate reductase protein FT TR:CAC45654 (EMBL:AL591786) (140 aa) fasta scores: E(): FT 1.4e-23, 59.48% id in 116 aa. Also similar to BP1681, FT 56.140% identity (57.658% ungapped) in 114 aa overlap." FT /protein_id="CAE41602.1" FT /translation="MFHRGVCMSATIYHNPRCSTSRNVLQMLRDAGIEPTIIEYLKTPP FT SRQTLAGLIQQSGLSVREAVRAKEPIYQELGLDGVDDEGLLDAMVDNPILINRPFVITE FT RGARLCRPAESVREILP" FT CDS complement(1376087..1376626) FT /transl_table=11 FT /locus_tag="BP1307" FT /product="putative bacterioferritin comigratory protein" FT /note="Similar to Escherichia coli bacterioferritin FT comigratory protein Bcp or B2480 or Z3739 or Ecs3342 FT SW:BCP_ECOLI (P23480) (156 aa) fasta scores: E(): 1e-06, FT 28.84% id in 156 aa, and to Caulobacter crescentus FT bacterioferritin comigratory protein, putative Cc1673 FT TR:Q9A7P7 (EMBL:AE005842) (177 aa) fasta scores: E(): FT 2.1e-26, 49.41% id in 170 aa" FT /protein_id="CAE41603.1" FT /translation="MSRPALLLAALLSIAAPAAHAALPVGAPAPDFSAQASQGGNTFTF FT ELAQALRQGPVVLYFYPAAFTQGCTIEARNFAEAIDQYRALGATVIGVSGDDIETLRKF FT SVSECRGKFPVAADADGAIMKAYDAVHDRRPEYAQRISYVISPQGRIVYEFTDMSPDRH FT VANTLQALRDWQARKK" FT misc_feature complement(1376117..1376554) FT /note="HMMPfam hit to PF00578, AhpC/TSA family" FT misc_feature complement(1376564..1376626) FT /note="Signal peptide predicted for BP1307 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 21 and 22" FT CDS complement(1376719..1377669) FT /transl_table=11 FT /locus_tag="BP1308" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41604.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 1376719..1376750 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1376719..1377771) FT misc_feature complement(1376755..1377288) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1377346..1377411) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1377740..1377771) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(join(1377768..1378148,1378147..1378407, FT 1378411..1378839)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1310" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have an in-frame TGA FT stop codon and frameshift mutation (due to a deletion) FT around codon 230. The sequence has been checked and FT believed to be correct. No significant database matches" FT /db_xref="PSEUDO:CAE41605.1" FT variation complement(1378147..1378149) FT /note="~100 bp deletion in pertussis; relative to FT parapertussis and bronchiseptica" FT variation complement(1378408..1378410) FT /note="in-frame TGA stop codon in pertussis; TGG in FT parapertussis and bronchiseptica" FT misc_feature complement(join(1378420..1378485,1378531..1378596)) FT /note="2 probable transmembrane helices predicted for FT BP1310 by TMHMM2.0 at aa 81-103 and 118-140" FT misc_feature complement(1378768..1378839) FT /note="Signal peptide predicted for BP1310 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT CDS complement(1379021..1379425) FT /transl_table=11 FT /locus_tag="BP1311" FT /product="putative membrane protein" FT /note="Similar to Bacillus halodurans YfiD or Bh3304 FT TR:Q9RC47 (EMBL:AB024562) (129 aa) fasta scores: E(): FT 2.8e-07, 35.04% id in 117 aa, and to Vibrio cholerae FT hypothetical protein Vca1019 TR:Q9KKT1 (EMBL:AE004428) (148 FT aa) fasta scores: E(): 2.5e-06, 38.71% id in 124 aa" FT /protein_id="CAE41606.1" FT /translation="MIKSDDAGKLILRLALGILVIMHGLAKLSSGVGGIAGMLSSHGLP FT GFLAYFAYVGEIVGPLLIILGIYCRLGALLVVLNMVVAILLAHMGQLFSISNTGGWALK FT LQGMFLFGALALAFMGAGRFSLAGSGGRWN" FT misc_feature complement(join(1379045..1379110,1379141..1379206, FT 1379222..1379287,1379348..1379404)) FT /note="4 probable transmembrane helices predicted for FT BP1311 by TMHMM2.0 at aa 7-26, 46-68, 73-95 and 105-127" FT CDS join(1379630..1380319,1380318..1380665) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1312" FT /product="putative metalloprotease (Pseudogene)" FT /EC_number="3.4.24.-" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 230. The frameshift occurs within FT a polymeric tract of (GC)4. The sequence has been checked FT and believed to be correct.Similar to Erwinia carotovora FT extracellular metalloprotease precursor Prt1 SW:PRT1_ERWCA FT (Q99132) (347 aa) fasta scores: E(): 3.7e-68, 55.88% id in FT 340 aa, and to Serratia marcescens extracellular minor FT metalloprotease precursor Smp SW:SMP_SERMA (Q06517) (352 FT aa) fasta scores: E(): 1e-34, 42.09% id in 335 aa" FT /db_xref="PSEUDO:CAE41607.1" FT misc_feature join(1379630..1380319,1380318..1380653) FT /note="HMMPfam hit to PF01447, Thermolysin FT metallopeptidase, catalytic domain" FT misc_feature 1380119..1380148 FT /note="ScanRegExp hit to PS00142, Neutral zinc FT metallopeptidases, zinc-binding region signature." FT variation 1380311..1380318 FT /note="(GC)4 in pertussis; (GC)5 in parapertussis and FT bronchiseptica" FT CDS 1380662..1380985 FT /transl_table=11 FT /locus_tag="BP1313" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical 19.7 FT kDa protein TR:Q9L885 (EMBL:AF214673) (192 aa) fasta FT scores: E(): 6.1, 33.64% id in 107 aa" FT /protein_id="CAE41608.1" FT /translation="MIALPSLEQAAEVRVSRQGGVAFVLALVRTRRFELGACSATLRAQ FT IDAALHSAAGQARDACGQGDQRYFRVEVHFGAGSRAEPLRFDVPEELAPHDLVWLWRSA FT PAR" FT CDS complement(1380988..1381875) FT /transl_table=11 FT /locus_tag="BP1314" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti putative FT oxidoreductase protein Smb20656 TR:CAC49763 (EMBL:AL603646) FT (289 aa) fasta scores: E(): 5.6e-44, 44.52% id in 274 aa, FT and to Rhizobium meliloti probable oxidoreductase Sma2157 FT TR:AAK65830 (EMBL:AE007303) (327 aa) fasta scores: E(): FT 3.4e-32, 38.21% id in 280 aa" FT /protein_id="CAE41609.1" FT /translation="MSRARFLRLAGAAALGLAAPRVPAAPSLLTRPVPADGSPLPVIGC FT GTYIGFDVARPSAEYDALGEVVRTLFAAGGTVLDSSPMYGRAEAVTGRLLAEAGLRQRA FT FVATKVWTSGRAAGLAQMQASLRQLGGERIDLMQIHNLLDWRTHLPVLREWQAAGRIRY FT VGISHYTASAYDEVEAVLRAERLDFLQINYALDDRQAAQRLLPLAADRGVAVLVNRPFG FT GGGLLRRLAGRPLPSWAADIGATSWAQVLLKFVLSHPAVTCAIPGTGRAAHMRDNLAAG FT MAAPPPLSFWNDKA" FT misc_feature complement(1381804..1381875) FT /note="Signal peptide predicted for BP1314 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.792 between residues 24 and 25" FT CDS complement(1381908..1382333) FT /transl_table=11 FT /locus_tag="BP1315" FT /product="universal stress family protein" FT /note="Similar to Halobacterium sp Vng1536C TR:Q9HPP5 FT (EMBL:AE005067) (147 aa) fasta scores: E(): 3.5e-10, 36.23% FT id in 138 aa, and to Methanococcus jannaschii hypothetical FT protein Mj0531 SW:Y531_METJA (Q57951) (170 aa) fasta FT scores: E(): 7.4e-09, 32.62% id in 141 aa" FT /protein_id="CAE41610.1" FT /translation="MLKILVPVDGSECAVRAVREAIKVANDSKGAQLHLLNVQLPLISG FT HAKMFLRHNELQSYYQAEGEAALATVLPVVAESGIPFESEMRTGQYGETIANYAKEKQC FT DRIVMGTRGLGAVGGLLLGSVARKVIHLADVPITLVK" FT misc_feature complement(1381914..1382243) FT /note="HMMPfam hit to PF00582, Universal stress protein FT family" FT CDS complement(join(1382405..1382761,1382760..1382957)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1316" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 66. The frameshift occurs within a FT polymeric tract of (GC)3. The sequence has been checked and FT believed to be correct. No significant database matches" FT /db_xref="PSEUDO:CAE41611.1" FT misc_feature complement(join(1382435..1382500,1382696..1382752)) FT /note="2 probable transmembrane helices predicted for FT BP1316 by TMHMM2.0 at aa 2-21 and 86-108" FT variation complement(1382761..1382766) FT /note="(GC)3 in pertussis (frameshift); (GC)4 in FT parapertussis (has also a frameshift nearby) and FT bronchiseptica (no frameshift)" FT misc_feature complement(join(1382772..1382837,1382883..1382936)) FT /note="2 probable transmembrane helices predicted for FT BP1317 by TMHMM2.0 at aa 7-25 and 40-62" FT misc_feature complement(1382892..1382957) FT /note="Signal peptide predicted for BP1317 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.924) with cleavage site FT probability 0.365 between residues 22 and 23" FT CDS complement(1382998..1383504) FT /transl_table=11 FT /locus_tag="BP1318" FT /product="putative membrane protein" FT /note="no significant database matches" FT /protein_id="CAE41612.1" FT /translation="MGRLFSERPQMSRTSLSSLAPRPHRLLSLAWAATVLSLRVGMGIS FT GLFCAWRYLVDLRPVRPLFDGVAAGATPLALYAAFEAGCAVLLMAGASTRIAAAGMTAA FT HIAGVALALPAHGLWIPLPSALWLACLALLWCHGPGPCSVDACLHPAAIAPLSPPPDDP FT AQRPI" FT misc_feature complement(join(1383145..1383210,1383232..1383297, FT 1383343..1383399)) FT /note="3 probable transmembrane helices predicted for FT BP1318 by TMHMM2.0 at aa 35-54, 69-91 and 98-120" FT CDS complement(1383543..1384874) FT /transl_table=11 FT /locus_tag="BP1319" FT /product="GntR-family transcriptional regulator" FT /note="Similar to Salmonella typhimurium putative FT transcriptional regulatory protein PtsJ SW:PTSJ_SALTY FT (P40193) (430 aa) fasta scores: E(): 1.7e-73, 54.31% id in FT 429 aa, and to Streptomyces coelicolor putative GntR-family FT transcriptional regulator Sc10a9.02C TR:Q9AKA2 FT (EMBL:AL583943) (445 aa) fasta scores: E(): 1.9e-46, 43.3% FT id in 418 aa" FT /protein_id="CAE41613.1" FT /translation="MSITGASAAEIFDSVRQLAQARRLLPGQALPPVRELAQTLGVNRN FT TVAAAYKRLVGAGLALSQGRRGTIIRAPSEPGEQDGAHPGSPLIDLASGNPDPARLPDP FT LAIMAGRASPPRLYGEATVDPRLQAYASQWYAGDCPAAFEVDLTHGAIDAIERLLGANL FT AAGDTVAVEAPGFLGSINALRALGLRAEGVALDAAGMLPDALERALADGAQAVLLTPRA FT QNPTGASLTRARARALRQVLQRYPHVMVIADDHFAHLSASPYHSPIPAAALRWALVRSV FT SKALGPDLRLAFVASDPDTSRRLRLRLASGTTWVSHLLQDVVAGCLASAPVQARMAQAR FT RAYAQRRAWLADALRAEGIAAQWPADGLNLWVPLAQDSPALLLELAHRGWRLRNGRSFG FT VREDVHGLRITIATLEHATARRLARDLRLCLDARDGLKKYPMLL" FT misc_feature complement(1384665..1384844) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(1384713..1384787) FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(1384719..1384784) FT /note="Predicted helix-turn-helix motif with score 1206 FT (+3.29 SD) at aa 31-52, sequence PPVRELAQTLGVNRNTVAAAYK" FT CDS 1384934..1385749 FT /transl_table=11 FT /locus_tag="BP1320" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1717 TR:Q9PCR1 (EMBL:AE003995) (266 aa) fasta scores: FT E(): 1e-62, 67.82% id in 258 aa, and to Bacillus halodurans FT Bh2550 protein TR:Q9K9U5 (EMBL:AP001515) (228 aa) fasta FT scores: E(): 1.3e-27, 43.04% id in 230 aa. Also similar to FT BP0560, 57.576% identity (58.333% ungapped) in 231 aa FT overlap." FT /protein_id="CAE41614.1" FT /translation="MHADTAQDAPDAAARYPRADSVADFEHNLAAVRARMAAACQRAGR FT DPAGVRLLPVSKTVDEARIRMSYAAGCRELGENKVQEAYRKWEAMADLADLRWSVIGHL FT QTNKAKLVARFAAEFQALDSVRLAEALERRLQAEGRALDVYVQVNTSGEASKYGLHPDE FT AAAFIRQLPSYGALRVRGLMTLAVLSADAARVRQCFVLLRTLRDRLRQEAPAGVSLDEL FT SMGMSGDYEIAIEEGATVVRVGQAIYGARALPNDYYWPDSGAADRAEDE" FT misc_feature 1385012..1385689 FT /note="HMMPfam hit to PF01168, Uncharacterized protein FT family UPF0001" FT CDS 1385746..1386600 FT /transl_table=11 FT /gene="pdxK" FT /locus_tag="BP1321" FT /product="pyridoxine kinase" FT /EC_number="2.7.1.35" FT /note="Similar to Escherichia coli pyridoxine kinase PdxK FT or B2418 SW:PDXK_ECOLI (P40191) (283 aa) fasta scores: E(): FT 5.6e-43, 47.7% id in 283 aa, and to Salmonella typhimurium FT pyridoxine kinase PdxK SW:PDXK_SALTY (P40192) (287 aa) FT fasta scores: E(): 1.8e-42, 46.86% id in 271 aa" FT /protein_id="CAE41615.1" FT /translation="MMKLAAPNPQALAPLPIDVVSIQSQVVYGQVGNSVAVPVFNGFGL FT RVAAVPTVVLSNTPHYPSMHGGAVPLDWFEGYLADLGARGALAGVRVVQLGYLGGPAQA FT EALGRWIAGLVAERPDLRVHIDPVIGDHDSGVYVAPGMVAAYRDHLLSLAQGLTPNGFE FT LECLTGLPTGTMEQTIAAARTLLGGRARWVIVTSAAPATWPPGRVRVAVVTHDDAQVLE FT HAHVDTAPKGTGDMFGAALTGHRLAGQPVAEAARRAALQVIEALERTREAGCGELLLAG FT PLR" FT CDS join(1386701..1388554,1388554..1389672) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1322" FT /product="two-component sensor histidine kinase FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 618. The sequence has been checked FT and believed to be correct. Similar, over its C-terminal FT region, to Pseudomonas syringae histidine protein FT kinase-response regulator hybrid protein CvgsY TR:Q9WWH5 FT (EMBL:AF133263) (671 aa) fasta scores: E(): 2.6e-60, 38.48% FT id in 569 aa, and to Rhizobium loti two-component sensor FT histidine kinase mll8067 TR:Q984C1 (EMBL:AP003013) (1386 FT aa) fasta scores: E(): 7.7e-49, 41.6% id in 387 aa" FT /db_xref="PSEUDO:CAE41616.1" FT misc_feature 1386827..1387246 FT /note="HMMPfam hit to PF01590, GAF domain" FT misc_feature 1387367..1387450 FT /note="HMMPfam hit to PF00989, PAS domain" FT misc_feature 1388147..1388341 FT /note="HMMPfam hit to PF00989, PAS domain" FT misc_feature join(1388543..1388554,1388554..1388748) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT variation 1388555 FT /note="C(-)G in pertussis; C(T)G in parapertussis and FT bronchiseptica" FT misc_feature 1388869..1389240 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature 1389304..1389642 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS complement(1389663..1392206) FT /transl_table=11 FT /locus_tag="BP1323" FT /product="probable alpha amylase" FT /note="Similar to Streptomyces coelicolor putative alpha FT amylase Scbac1a6.05C TR:Q9ADI2 (EMBL:AL589708) (805 aa) FT fasta scores: E(): 8.8e-23, 38.42% id in 864 aa, and to FT Pseudomonas aeruginosa probable glycosyl hydrolase Pa2162 FT TR:Q9I1V3 (EMBL:AE004643) (926 aa) fasta scores: E(): FT 4.1e-28, 45.05% id in 930 aa" FT /protein_id="CAE41617.1" FT /translation="MIRATVRLQLHAGFTLDAAGAQLDYYDALGISHLYLSPVARARCG FT STHGYDVIDHAQVNPELGGLAALRRLAGAARARGMGLILDIVPNHMAAHPDNRWWREVL FT RDGPASAYADWFDIDWRPPGRTLRGRVLLPVLTCGARAALASGEIGLRAGSDGTPALHA FT NGLDLPLAPASLPMAALLLHHGGTPAQWHALLRAQAYRLAWWRSAAQAINWRRFFEIGD FT LVGVRVERPEVFDAVHALPLALYRAGLIDGLRIDHVDGLAEPGAYCRRLRAELAQAGQA FT RAARGLSAEPYVVVEKILGDKETLRTDWPVQGTTGYDFMNEASAWLHDARGAAPLAAFW FT RDNAGTWPHWREQLRRIRLRLLRRHFGAERRALARSLADLPELRASAAAIDPVLTQWLA FT CFPVYRTYAEGGAGQAADQAWRQTAQTRANAHLDPAQQALLAALCLALDGRMADAPHRL FT ALRRLQQLTPPLAAKALEDTWFYRDGTLLSRNEVGPAPAQFALGGGALRRSVAARARRH FT PQALLATASHDHKRGEDVRARLAVLSEMPQQWCDWARQWLADAGGSAAPPAWADRYMLL FT QTLVGAWPADLAPDDQAGMAALLRRVAAWQAKALREARQRSSWTCPDLAYETLCARYLR FT ALADDGAALPAVAALARRLAPAGLVNSLAQTALRLGLPGVPDLYQGCETWDLSLVDPDN FT RRAVDYAARRGALASLGNGALALPELWRDGRAKQALVARALQWRREQPALFEHGACRWL FT RVSGARARHVLACLRTRGPQQALIVVPRASALALAGQTGPDRDAAAHWRDTCVHLPADA FT PPWRDILTHAGHQGRALALSELLARWPVALCRVQS" FT misc_feature complement(1390755..1392194) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT CDS complement(join(1392203..1393177,1393177..1393497, FT 1393499..1393576)) FT /pseudo FT /transl_table=11 FT /gene="malQ" FT /gene_synonym="malA" FT /locus_tag="BP1324" FT /product="putative 4-alpha-glucanotransferase (pseudogene)" FT /EC_number="2.4.1.25" FT /note="Pseudogene. This CDS appears to contain a deletion FT that has lead to a shift in reading frame around codon 133, FT and also appears to have a frameshift mutation following FT codon 26. The sequence has been checked and believed to be FT correct. Similar to Escherichia coli FT 4-alpha-glucanotransferase MalQ or MalA or B3416 FT SWALL:MALQ_ECOLI (SWALL:P15977) (694 aa) fasta scores: E(): FT 2.1e-25, 38.31% id in 327 aa" FT /db_xref="PSEUDO:CAE41618.1" FT variation complement(1393177..1393179) FT /note="large deletion relative to parapertussis and FT bronchiseptica" FT variation complement(1393499..1393501) FT /note="CGC(-) in pertussis; CGC(A) in parapertussis and FT bronchiseptica" FT CDS complement(1393573..1395327) FT /transl_table=11 FT /locus_tag="BP1326" FT /product="probable alpha amylase" FT /note="Similar to Sulfolobus shibatae maltooligosyl FT trehalose trehalohydrolase TreZ TR:Q9UWN9 (EMBL:AF201335) FT (559 aa) fasta scores: E(): 3.4e-50, 34.79% id in 500 aa, FT and to Pseudomonas aeruginosa probable glycosyl hydrolase FT Pa2164 TR:Q9I1V1 (EMBL:AE004643) (583 aa) fasta scores: FT E(): 3.1e-101, 53.79% id in 554 aa" FT /protein_id="CAE41619.1" FT /translation="MNEPAPLGATVCAPGKIRFRLWAPSAPPALALEIEGRAPIALRPG FT PDGYAQAIVDGAPGLRYRYRLAADCVVPDPASRLQDGDVHGHSVVVGPDRYPWRHTGWR FT GRPWQDSVIYEAHAGLCGGYAGLRRRLPEVARLGVTLLELMPIADFPGPRNWGYDGVLP FT YAPDTAYGTPDELKALIDAAHGLEMGVMLDVVYNHFGPDGNYLHRYAADFFDARADTPW FT GAAIDYRQQAVQRYFIDNALYWLRKYRFDGLRLDAVHAMGRTDWLAGLAREARAACPDR FT RVHLVVENDANQASLLEQGFDAQWNDDAHHVLHHLLTGERQGYYADYAQAPAALLARAL FT GEGYVYQGQAAPTRGGRARGEPSAHLPPWAFVLFLHNHDQVGNRADGLRLTSLLAPGSP FT ALRAAIALQLLAPHIPLLFMGEEYGSTAPFFYFTSHGPELAAAVRAGRAREFAASMHDC FT DPPPDPNDPDTYRRSCPWPPPGAERQAWFEYYRELLRLRARLLGERLTGARADGAAALG FT PAAVRAAWRLGDGARLTLYANLLPGSVIVPAPPAGQLAYATLAGAGQDLVAGVLRGGCA FT LALWEPAP" FT misc_feature complement(1393606..1394994) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT CDS complement(1395324..1397444) FT /transl_table=11 FT /gene="glgX" FT /locus_tag="BP1327" FT /product="probable glycosyl hydrolase" FT /note="Similar to Escherichia coli glycogen operon protein FT GlgX or GlyX or B3431 SW:GLGX_ECOLI (P15067) (657 aa) fasta FT scores: E(): 5.3e-95, 47.25% id in 656 aa, and to FT Pseudomonas aeruginosa probable glycosyl hydrolase Pa2160 FT TR:Q9I1V5 (EMBL:AE004643) (716 aa) fasta scores: E(): FT 8.2e-151, 55.61% id in 712 aa" FT /protein_id="CAE41620.1" FT /translation="MYPSLPDRLLPGLPAPLGATSDGLGVNFAVFSANAARIELCLFDA FT RGRKELARLPMPECTDEVWHGYLPDAQPGLVYGYRAHGPYNPRAGHRFNPHKLLLDPYA FT TALTGALRWSDALFGYRMQHPRADLSMDRRDSAAGVPKAVVTEPAFHWGATRRPAAAWA FT HTVIYEAHVRGVSMLRSDLREPIRGTCAALSDPRFIDHLHRLGVTALELMPVHAFLQDR FT TLVERGLRNYWGYNTLAYFAPEPAYLADGQPHDLRRAIRRLHAAGIEVILDVVYNHTCE FT GNELGPTLSWRGLDNASYYRLVPGDERRYIDDTGTGNTLNLSHPRVLQMVMDSLRHWAV FT HYRVDGFRFDLGVTLGREGTGFDAGSGFFDALLQDPVLARVKLISEPWDVGPDGYQLGR FT HPPGMAEWNDQFRDTARRFWRGDAGMAGALATRLTASRDVFDHRHRRPWSSINFAAAHD FT GFTLQDVVSFAERHNEANGEDGADGHGENYSSNWGVEGAASSAAIRETRARVQRALLAT FT VMLADGTPMLLAGDEFGNSQGGNNNAYCQDGPMGWLDWAVAQSTPGRALTAYAARLAGL FT RRAHPSLRATRYGDPAHQWQEGLGAIDWFNGRGAPMTSADWDAPEGRLLVLRRALPDPA FT QPGRVDVTLLLCNAAAEPRPCVLPAPTLAWTLALDSASPEAPAAPCDGGEAIVGARAVL FT LLTASVDGAHAP" FT misc_feature complement(1395543..1396949) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT CDS complement(1397449..1399644) FT /transl_table=11 FT /gene="glgB" FT /locus_tag="BP1328" FT /product="1,4-alpha-glucan branching enzyme" FT /EC_number="2.4.1.18" FT /note="Similar to Escherichia coli 1,4-alpha-glucan FT branching enzyme GlgB or B3432 SW:GLGB_ECOLI (P07762) (728 FT aa) fasta scores: E(): 5.4e-140, 50.88% id in 731 aa, and FT to Pseudomonas aeruginosa 1,4-alpha-glucan branching enzyme FT GlgB or Pa2153 TR:Q9I1W2 (EMBL:AE004642) (732 aa) fasta FT scores: E(): 1.3e-166, 59.07% id in 716 aa" FT /protein_id="CAE41621.1" FT /translation="MMRDSPSIQGTLDAATQHALLAGRHADPFSVLGPHQAGAHTVVRV FT LAPGARTVMAVLPGGQRTPLLPMQPGLFENTVPGLQPGAPAAYRLCIEWEGGIQHTADP FT YAFGPVLDAAQLDHCAAGGWRYLAGLLGAHAASVDGCAGTRFALWAPNARRVAVVGDFN FT GWDGRRHAMRLRYPAGVWELFLPDVGPGARYKFQVLGADGHTVLKADPLARQAEAPPAT FT ASIVPDERPFAWTDKAWMEQRAARQRCDAPISIYEVHAGSWFDDAGAPRWQNLAARLPE FT YARSLGFTHIELLPVMAHPFGGSWGYQPLGLFAPAAAHGAPADFAHFVDRCHEAGLGVI FT LDWVPAHFPDDAHGLARLDGTPLYEHADPREGRHPDWNTLIYNYGRREVRTFLIASAIH FT WLRHYHVDGLRVDAVASMLYRDYSRPAGQWIPNRHGRRENLEAIDFLRELNAAVGVQCP FT GAITVAEESTAWPGVTAPVANGGLGFDYKWNMGWMHDTLRYMRRDPIHRRHHHHDLSFG FT MVYAYAERFVLPLSHDEVVHGKGSLLGKMPGERAAQLAQLRLYYAFMWAHPGKKLLFMG FT GEFGQQGEWNHDAMLQWSLLDDPAHRGLQRLVADLNHVYATLPELHCRDADPSGFAWIV FT GDDADNSVLAFARVDASHCLVAVCNFTPVPRPGYRFGVPHAGDWRVRVDTGATRYGGAG FT GGPPICLRSEPIPAHGHPQSLVLDLPGFTALYLRHSE" FT misc_feature complement(1397629..1398885) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT CDS complement(1399641..1402982) FT /transl_table=11 FT /locus_tag="BP1329" FT /product="alpha-glucosidase" FT /note="Similar to Pimelobacter sp trehalose synthase treS FT TR:P72235 (EMBL:D78198) (573 aa) fasta scores: E(): FT 2.4e-90, 58.22% id in 553 aa, and to Pseudomonas aeruginosa FT probable trehalose synthase Pa2152 TR:Q9I1W3 FT (EMBL:AE004642) (1100 aa) fasta scores: E(): 0, 58.35% id FT in 1107 aa" FT /protein_id="CAE41622.1" FT /translation="MPATHPAPDPLWYKDAVIYQLHVKSFFDANDDGVGDFAGLLAKLD FT YIVELGVNTIWLLPFYPSPRRDDGYDIADYRGVHPDYGSLADARLLVRAAHARGLRVIT FT ELVINHTSDQHPWFQRARAARPGSAHRAYYVWSDDDKAYAGTRIIFCDTEKSNWTWDPV FT AGAYFWHRFYSHQPDLNYDNPQVLREVLGAMRYWLDMGVDGLRLDAVPYLVEREGTNNE FT NLPETHAILRRIRRVIDSEYPGRMLLAEANQWPEDAQEYFGAGDECHMAFHFPLMPRMY FT MAIAQEDRLPVTDIIRQTPSIAPQCQWAIFLRNHDELTLEMVTSRERDYLWNVYAAEPR FT ARINLGIRRRLAPLLERDRRRIELMNSLLLSMPGTPVLYYGDELGMGDNIHLGDRDGVR FT TPMQWSPDRNGGFSRADPERLPLPLLMGPLYGYEAVNVEAQQRDPHSLLNWTRRMLAKR FT RQSHVFGRGELSFLYPGNRKILAYLRTWEDTVVLCVANLSQAAQPVELHLSEYAGRVPV FT EMLGGTAFPQIGELPYLLTLPPFGFYWLDLSAGAAPPAWHSELPPQMPESITLVSRGAG FT AALRLTEASRRQLEADVLPAYLQRQRWYAARRKPGVMRLAYSVPLNDDVESYYEAEIEV FT SDDGPPRRFHTPVALAWQDDTAAQYPLARVRRGAQLGTLTDASLQPGYARVLLAALTAG FT RDIQAGGEPAVRLRFLPEPGLADLALRDDSEVRALSADQSNSSLLVGERVVFKLLRELH FT AGPHPEAEMTRYLTQAGYAHTPALLGEVVRVQGDQAPHTLALAHAYVVNEGDAWNWTVA FT YLKRTLDAAILTGASADDYQQELAGYEVLAGTIGQRLAQMHSVLARAGELPGFAPRPAS FT ERDAALAGERAVAQLDRALQALRACESGLAPASHACAQWLFEHRDRLAAHIMTLAQAET FT GALRIRVHGDFHLGQILVAQTDAYLIDFEGEPARPMAERRQLSSPFKDVAGILRSFDYA FT VAELSRDDPLGGAPRDFNTGVAEPADPASAPRETREALLARFRQRAGAALLASYGNAID FT PVLALPPERAQALTCLYLLEKAAYEICYESAYRPERLPVPIHGLAETARAALLAAAVDH FT DEGPAP" FT misc_feature complement(1401594..1402934) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT CDS complement(join(1402994..1404556,1404556..1405686)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1330" FT /product="putative alpha-amylase (pseudogene)" FT /note="Pseudogene. This CDS appears to be disrupted by the FT insertion of IS481 element, and contains a frameshift. FT Similar to Ralstonia solanacearum putative FT alpha-amylase-related protein Rsp0241 or Rs05182 FT SWALL:Q8XT74 (EMBL:AL646077) (1201 aa) fasta scores: E(): FT 4.1e-131, 47.79% id in 998 aa" FT misc_feature complement(1403021..1403086) FT /note="Predicted helix-turn-helix motif with score 983 FT (+2.53 SD) at aa 481-502, sequence ASWREAALDLELTPQRPYRLWR" FT misc_feature complement(1403132..1404373) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT misc_feature complement(1403645..1403674) FT /note="ScanRegExp hit to PS00019, Actinin-type FT actin-binding domain signature 1." FT repeat_region 1405683..1405714 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 1405683..1406735 FT CDS 1405785..1406735 FT /transl_table=11 FT /locus_tag="BP1332" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41624.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR" FT misc_feature 1406043..1406108 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1406166..1406699 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1406704..1406735) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1406715..1406804) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1332A" FT /product="conserved hypothetical protein (pseudogene)" FT /note="This CDS is disrupted by the insertion of IS481. FT Similar to The N-terminus of Pseudomonas aeruginosa FT hypothetical protein Pa2244 SWALL:Q9I1M5 (EMBL:AE004650) FT (333 aa) fasta scores: E(): 0.2, 66.66% id in 21 aa" FT /db_xref="PSEUDO:CAE41625.1" FT CDS complement(1406801..1406980) FT /transl_table=11 FT /locus_tag="BP1333" FT /product="hypothetical protein" FT /note="no significant database matches." FT /protein_id="CAE41626.1" FT /translation="MKPTPTSQDRKQDDDTQREAQRSHGSQQARTKKDGHVSQIGSNQD FT QSSQRNRGQGARRS" FT CDS complement(1407097..1407819) FT /transl_table=11 FT /locus_tag="BP1334" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2168 TR:Q9I1U7 (EMBL:AE004644) (258 aa) fasta FT scores: E(): 8.8e-66, 65% id in 240 aa" FT /protein_id="CAE41627.1" FT /translation="MFDTQVAGTLLTPRAKLPGVLFVHGWGGNQRFDLSRARDIAGLGC FT ICLTFDLRGHAATEAQRRQVTREDSLRDIMAAYDALIAHPAVDTSAIAVVGSSYGGYLA FT AILTTLRAVRWLALHVPALYRDDEWAQPKLQLDRAAISAYRHATVAPEGNRALSACSSF FT RGDVLIVEAEHDDYIPHSTIMSYRGAFLHSHSLTHRIVDGADHALSDKRCQQAYSSILL FT NWATEMVVGARVGAGRPA" FT misc_feature complement(1407511..1407603) FT /note="ScanRegExp hit to PS00708, Prolyl endopeptidase FT family serine active site. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature complement(1407511..1407606) FT /note="HMMPfam hit to PF00326, Prolyl oligopeptidase FT family" FT CDS complement(1407839..1408984) FT /transl_table=11 FT /locus_tag="BP1335" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2167 TR:Q9I1U8 (EMBL:AE004644) (365 aa) fasta FT scores: E(): 2.1e-39, 41.48% id in 364 aa" FT /protein_id="CAE41628.1" FT /translation="MNPAAAVPRRPVDLVVAHPGRRDAPRHERASLRALGLDIAELLGC FT EYADALPAAARDPRLRVYYVPARTLLDGRALALGIQGPDDLFGGVAPHGFVATKAITHA FT LPHDGCAAPAAWSRELGARLSDCVLPGCTVFALDEARQGGARMLRTSALRVKPVRATAG FT RGQRKVADAAALDQALAEQDAGEVRRYGLVLEEHLEDISTYSVGVAQVGVHLASYIGTQ FT SLTLDHAGLEVYGGSDLWFVSGPLPALLQLELDAPRRTALEHAMRYDEQAFACYPRLYA FT SRRNYDVARGRDAQGRWRTGVLEQSWRAGGASLAEIAALRAFAQGGGLRRAHAATSEHY FT GPDPAHPPGTRIVFHAHDAEVGFISKAGGMTQDNGTDDDDT" FT CDS complement(join(1409038..1409790,1410839..1411033)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1338" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Pseudomonas aeruginosa FT hypothetical protein Pa2154 TR:Q9I1W1 (EMBL:AE004642) (331 FT aa) fasta scores: E(): 9.5e-38, 44.44% id in 306 aa, and to FT Escherichia coli hypothetical protein YbhN or b0788 FT SW:YBHN_ECOLI (P75770) (318 aa) fasta scores: E(): 6.6e-36, FT 37.77% id in 315 aa" FT /db_xref="PSEUDO:CAE41629.1" FT misc_feature complement(join(1409071..1409136,1409200..1409265, FT 1409296..1409361,1409422..1409487,1409533..1409598, FT 1409662..1409727)) FT /note="6 probable transmembrane helices predicted for FT BP1336 by TMHMM2.0 at aa 49-71, 92-114, 129-151, 171-193, FT 203-225 and 246-268" FT repeat_region 1409793..1410842 FT CDS 1409892..1410842 FT /transl_table=11 FT /locus_tag="BP1337" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41630.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR" FT misc_feature 1410150..1410215 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1410273..1410806 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1410811..1410842) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT misc_feature complement(1410938..1410994) FT /note="1 probable transmembrane helix predicted for BP1338 FT by TMHMM2.0 at aa 13-32" FT CDS complement(1411030..1412232) FT /transl_table=11 FT /locus_tag="BP1339" FT /product="probable phospholipase" FT /note="Similar to Pseudomonas aeruginosa probable FT phospholipase Pa2155 TR:Q9I1W0 (EMBL:AE004642) (401 aa) FT fasta scores: E(): 3.6e-84, 58.2% id in 390 aa, and to FT Escherichia coli hypothetical protein YbhO or B0789 or FT Z1008 or Ecs0867 SW:YBHO_ECOLI (P75771) (413 aa) fasta FT scores: E(): 1.4e-81, 52.68% id in 391 aa" FT /protein_id="CAE41631.1" FT /translation="MSTPWRDGNRFAILENGASYFPRVYTAIGKAREEILIETFILFDD FT AVGRELREALMAAARRGVRIDVTVDGYGSDSLPPDFIAGLVELGVGFHVFDPRPRLLGM FT RTNLFRRLHRKIVAIDGTLAYVGGLNFSADHLDDYGPQSKQDYAIEIAGPLAADIRDFA FT RAALAAVPRRRWRRARPAAPPQAAGPARARLVVRDNDQHTNDIEQSYRVAIRAARRDIV FT IANAYFFPGYRLLRDLRAAAARGVRVRLILQGEPDMPIAQLGARLLYDALAEAGVEILE FT YCERPLHGKVASIDDEWATVGSSNLDPFSLALNLEANVEVRDSAFASGLRERLERLAID FT HCRPAPQSDGAGRQLRRLFAGALVYHFLRRFPAWAGSLPAHKPRIQTLRPDGQGQPDEA FT T" FT misc_feature complement(1411303..1411386) FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif" FT misc_feature complement(1411828..1411911) FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif" FT CDS complement(1412229..1412987) FT /transl_table=11 FT /locus_tag="BP1340" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2156 TR:Q9I1V9 (EMBL:AE004642) (245 aa) fasta FT scores: E(): 2.2e-62, 63.93% id in 244 aa, and to FT Escherichia coli hypothetical protein YbhP or B0790 or FT Z1009 or Ecs0868 SW:YBHP_ECOLI (P75772) (253 aa) fasta FT scores: E(): 2.8e-53, 53.72% id in 255 aa. Also similar to FT BP0710, 37.801% identity (46.610% ungapped) in 291 aa FT overlap." FT /protein_id="CAE41632.1" FT /translation="MPPEPIRLRILTVNAHKGFTSFNRRFILHELREALREARPDLVFL FT QEVLGEHQRHAARHARWPAVSQYEFLADTLWSAYAYGRNAVYPDGHHGNAVLSKYPIVS FT HRNEDLSVGAAHEPRGMLHCVLDVRDAPAPLHALCVHLGLREAHRQEQLRRLCQYLRQH FT VPAQAAALLAGDFNDWRQRADATLARCGLADVHRLALGHAARTFPAACPLLRLDRIYVR FT NVAGSEPRRLSRRPWSRLSDHVPLAAEVTL" FT CDS join(1413081..1413242,1413244..1413273) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1341" FT /product="hypothetical protein (pseudogene)" FT /note="no significant database matches" FT /db_xref="PSEUDO:CAE41633.1" FT CDS 1413381..1414013 FT /transl_table=11 FT /locus_tag="BP1342" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mll2459 protein Mll2459 FT TR:Q98ID0 (EMBL:AP002999) (180 aa) fasta scores: E(): FT 2.1e-16, 41.11% id in 180 aa, and to Escherichia coli FT hypothetical protein YqjI or B3071 SW:YQJI_ECOLI (Q46872) FT (207 aa) fasta scores: E(): 7e-11, 41.54% id in 142 aa" FT /protein_id="CAE41634.1" FT /translation="MHPFHVFAMSAHGGRGGGHAGGRHGGGHGAGGDGPDWRRGRKFSA FT DDLQLMILALLDEGPSHGYELIKALGARSRGFYTPSPGMVYPTLTWLEEAGHATVSQDG FT ARKHYHLAEPGRAHLQANRERVTLLMAQLAHVGRKMEWMRRAWAGQPIETGSEGEDLAT FT GWLPEYVQARMALKQALARHADATPARQRQLAAILARAAAELDDLSS" FT CDS join(1414039..1414401,1414397..1414807) FT /pseudo FT /transl_table=11 FT /gene="mxcB" FT /locus_tag="BP1343" FT /product="iron utilization protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation around codon 121. The sequence has been checked FT and believed to be correct. Similar to Stigmatella FT aurantiaca MxcB TR:Q9F641 (EMBL:AF299336) (270 aa) fasta FT scores: E(): 2.4e-21, 45.92% id in 270 aa, and to FT Escherichia coli hypothetical protein YqjH or B3070 FT SW:YQJH_ECOLI (Q46871) (254 aa) fasta scores: E(): 5.2e-21, FT 39.44% id in 251 aa" FT /db_xref="PSEUDO:CAE41635.1" FT variation 1414399..1414401 FT /note="~27 bp deletion in pertussis; ~27 bp insertion in FT parapertussis and bronchiseptica" FT CDS 1414969..1417569 FT /transl_table=11 FT /locus_tag="BP1344" FT /product="autotransporter" FT /note="Similar to Agrobacterium tumefaciens Agr_pat_528p FT TR:AAK90738 (EMBL:AE007905) (921 aa) fasta scores: E(): FT 4.8e-42, 33.19% id in 931 aa, and to Bordetella pertussis FT BapA protein bapA TR:Q9F4B4 (EMBL:AJ277632) (903 aa) fasta FT scores: E(): 1.3e-18, 29.75% id in 894 aa" FT /protein_id="CAE41636.1" FT /translation="MRSARRRTPARLAPLPAMLAAAGLLQSLGATPAAAACAPTLAPAS FT GQSVQCDGAVVNQSVEAAAGSQNVTITVAPGALFSTNATRALSVDDRSRIVNEGTIQMA FT GGAGASRGAMVGFGDNNQLINRGSITTSGSGVRGISVPNVGSTGTLVDNSGSIRTQGAS FT AHGIAINGPGNRVQNSGAITVNGTDAKGVYLQGGSPAANVLVNGGTIHARGASSNGIFG FT PDGVHVNTTNANGFHARVENLPGGRILSDHSYALRGQNGNDTFINAGYLQGHGGAGRDT FT AVYMGPQGTGTLILRTGSAIAGLADGGGAASHAYLEGSGTVDNRFANFRTLTMRGADWR FT WTSDAAFTESVDLRTGTFFLAGTLASPANRLAAGAVLAGTGTLAGALRNAGEIRPGPND FT GSGYGALTVRGDYTGAGGALRVNTVLAGDGAASDRLVIDGGHAGGSTPVTVVNRGGQGA FT LTAADGILVVQAINGASSDAGAFSLAAPLNAGAYEYRLYRGGATGAAPDSWYLRSRAYL FT VEDQLAGSLAEAEAIADDIGRRTGERPSIEDTPLYRPEVALYSSIPMLARRMGLAQLGT FT FHERQGNQALLARDGERVAAWARAYGGNSKQALDGDAQPGIDARLAGVQLGQDLYSSVR FT PDGGQHRFGLFGGYGQARGDTHGSAGGERDAATGRLTIDGYSVGGYWTYVGPRGWYVDA FT VLANTWMDIDTDSKAGRDADTRGQAFTASLESGYPLALSERWTLEPQAQLIYQHTRVDG FT FSDAVSEVRIRDDNALTARLGARLQGEYAAAAQVWRPYAALNFWRTFSGENTVVLGEDS FT IDTRRGATSLELAAGASVTLARSLALYGRLAYATSIDSQYLRGASAQLGMRYTW" FT misc_feature 1414969..1415076 FT /note="Signal peptide predicted for BP1354 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.539 between residues 35 and 36" FT CDS complement(1417557..1420976) FT /transl_table=11 FT /locus_tag="BP1345" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium tuberculosis hypothetical FT 123.1 kDa protein Rv1251c or Mtv006.23C TR:O50466 FT (EMBL:AL021006) (1139 aa) fasta scores: E(): 3e-51, 37.83% FT id in 1171 aa, and to Mycobacterium leprae hypothetical FT protein Ml1098 TR:Q9CC95 (EMBL:AL583920) (1152 aa) fasta FT scores: E(): 2.9e-45, 36.9% id in 1176 aa" FT /protein_id="CAE41637.1" FT /translation="MQQLGATRRYAASDLVGFLACEHLTQLDLRALDAGQAPAAADDEQ FT MALVQAKGQAHEQAWLERLRARHPDLADVTRAGPDLAARLAATRAAMAAGAPVIYQAAL FT CHGPYVGHADFLLRTECPSALGDYGYEALDTKLARSPRASFVLQLSFYAWLLEHAQGVA FT PRSMHVVLGSGRELALRVADYAHYLRQVLRRFEAAIAAEPAPPTYPEPCEHCPQCRWRV FT ACEARRVADDHLSLVAGMSRQQARRLNAQGVATLAQLGALPEHAQVAGIEAGTLQRLRA FT QAALQWRARVDGARHYELLAAQDEGPRGLARLPRPDPGDMFFDMEGDPLEDGGLEYLFG FT LYVIDDGAERFVPFWAHDRRQEKQAFEAFMDFVAERLRRHPDAHIYHYAPYEATALKKL FT MSLHGTREAEVDHLLRAGKLVDLYRVVREGLRISEPSYSIKYVERFYLPRRAGEVTNAG FT ASIVYYERWKATDEPRLLQDIADYNRDDVISTWRLRDWLCGIRPAALPWHNEAGQQDLD FT AARAVIGEMTEAERRLLPYRAALADDLPADEAAWSPRDAFRALAWHLLDFHRREQKPAW FT WAWFARAEATDGELIEDAECLGGLARDDAAPPVRQAQSLRYTYRYPAQETKLRTGARCT FT DVRTGASLANLVVDPHARLASFTCSARKPAPPPRMALGPAAPVNNKELVNAVFRYGDAV FT CRAPDGMSMPMRAVDALLRREPPRIRGLARGAPLVAPHAELLPQVLDVVARMDETTLFL FT QGPPGAGKTYTGSRVLLQLLRAGRRVAVSSNSHHAINNLLRGLERLAEREGFALRGAKK FT STSAGDDSCLGGAQIEDVFDNKDVDPARHQLVAGTAWLFARPEFEQAFDYLFVDEAGQV FT SLANLVAMGQCARNIVLLGDQMQLGQPSQGTHPGRSGESALDYLLDGQATIAASQGVFL FT DTSYRMHPEICGFISEAIYDGRLRAAPATAAHRLLLDEAAGRELPAHGIRYVPVPHDGN FT TQSSREEAARVAELCALLLRQRHVDEAGAPAPLTLDDILFVAPYNVQVNTLRAALPDGA FT RVGTVDKFQGQEAQVVIVSMATSSGDYLPRDLEFLFSRNRLNVAISRARTLAILVASPA FT LTAVRCRSAEQMALVNTLCWVAETGSASPYQV" FT misc_feature complement(1418691..1418714) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1420984..1421889) FT /transl_table=11 FT /locus_tag="BP1346" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa2417 TR:Q9I164 (EMBL:AE004669) FT (312 aa) fasta scores: E(): 4.1e-55, 52.72% id in 294 aa, FT and to Rhizobium meliloti putative transcription regulator FT protein Smc01570 TR:CAC46900 (EMBL:AL591790) (296 aa) fasta FT scores: E(): 6.3e-42, 41.69% id in 295 aa" FT /protein_id="CAE41638.1" FT /translation="MQDLNDLYYFVQTVDHRGFAPAGRALGMPKSKLSRRIAVLEERLG FT VRLIQRSTRHFSVTDIGQTYYEHCKAMLVEAEAAQEAIDAAQVEPRGVVRLSCPVALLH FT THVGAMLGEFMLRYPRVTLHLDASNRRVDVLGEGVDVAIRVRPPPLENSDLVMRPFADR FT GQCLVASPALLARHGAPALPADLAAWPRLALGLPNQPHSWLLTGPQGAQATVPLAPRMV FT TTDMLALRSAAVAGVGVVQLPSMMVRGQLADGTLVRLLPEWAPCRELIHAVFPSRRGLL FT SSVRTLVDFLAERFAALQEG" FT misc_feature complement(1421461..1421880) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(1421776..1421841) FT /note="Predicted helix-turn-helix motif with score 1152 FT (+3.11 SD) at aa 17-38, sequence RGFAPAGRALGMPKSKLSRRIA" FT CDS 1422028..1422606 FT /transl_table=11 FT /locus_tag="BP1347" FT /product="putative reductase" FT /note="Similar to Rhizobium loti Mll5191 protein Mll5191 FT TR:Q98CD9 (EMBL:AP003005) (203 aa) fasta scores: E(): FT 4.2e-35, 52.17% id in 184 aa, and to Streptomyces FT coelicolor putative reductase Scah10.16 TR:Q9RKU1 FT (EMBL:AL132824) (185 aa) fasta scores: E(): 1.8e-21, 40.32% FT id in 186 aa" FT /protein_id="CAE41639.1" FT /translation="MARLHIIICSTRPGRVGPAVADWFHAQALAHGGFEVALVDLAQVG FT LPLYDEPRHPMLQQYEHAHTRAWSRSVASADAFVFVTPEYNYGPPPALVNALNYVYKEW FT NYKPAAFVSYGGVSGGMRAVQAEKQTLTTLRMVPIFEYVAIPMVAERLDAAGRFQPQPI FT HDSMAQGLLTELRRFSDALQVLREPASTP" FT CDS 1422603..1423514 FT /transl_table=11 FT /gene="citE" FT /locus_tag="BP1348" FT /product="putative citrate lyase beta chain" FT /EC_number="4.1.3.6" FT /note="Similar to Leuconostoc mesenteroides citrate lyase FT beta chain CitE SW:CILB_LEUMC (O53078) (302 aa) fasta FT scores: E(): 1.8e-26, 35.06% id in 288 aa, and to FT Caulobacter crescentus citrate lyase beta subunit, putative FT Cc3659 TR:Q9A2A7 (EMBL:AE006024) (295 aa) fasta scores: FT E(): 1.3e-42, 47.22% id in 288 aa" FT /protein_id="CAE41640.1" FT /translation="MIPDPATAPSMNPTQTTNPMRPFRSVLYTPGANARALARARELDA FT DALILDLEDAVAVSAKEEARVQVTHALREGGFGRRSVIVRVNGLDTPWGEDDVRALAPL FT GPHAMLLPKVEHPAQLARAAALAAEAGAPGLAWWAMIETPLAILNIGAIAAAGAPLRAL FT VAGTSDLVKALHARHTPARAEVQAALSMTVLAARAHGLLALDGVHLDLADAEGLRHACR FT QGRDLGFDGKTLIHPRQIDSANAAFGPSEAEVVRAHAIMAAWQDAQAHGAGVTVVDGML FT VEALHVEDAQRVLALAQAIAAD" FT CDS complement(1423528..1424208) FT /transl_table=11 FT /locus_tag="BP1349" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative FT transcriptional regulator, GntR family protein Smb20773 FT TR:CAC49865 (EMBL:AL603647) (228 aa) fasta scores: E(): FT 4.7e-14, 35.29% id in 204 aa, and to Pseudomonas aeruginosa FT probable transcriptional regulator Pa0797 TR:Q9I5E1 FT (EMBL:AE004515) (240 aa) fasta scores: E(): 1.8e-13, 31.28% FT id in 211 aa" FT /protein_id="CAE41641.1" FT /translation="MTGTSKPNATSGSTLEYVVDTLRQGILSGRLVPGQRLVEADLTRQ FT LGVSRGPVRESFRRLSAEGLVESIPNQTTMVRRYSKAEMLELFEIRAELEALAARRAAE FT CMDDPAAKARFLQAIGPIWDEHSLAAGPSYFDENRRFHQAIADLSANTQLAELIRKLQL FT PLIMFQLGGAITPQAIQASIDEHRRIAQAIVDGNRRKAAAEVKAHLKRACEMVERMPPD FT IFRP" FT misc_feature complement(1423981..1424157) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(1424029..1424103) FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(1424035..1424100) FT /note="Predicted helix-turn-helix motif with score 982 FT (+2.53 SD) at aa 37-58, sequence LVEADLTRQLGVSRGPVRESFR" FT CDS 1424410..1426449 FT /transl_table=11 FT /locus_tag="BP1350" FT /product="putative acetyl-CoA synthetase" FT /note="Similar to Giardia lamblia acetyl-CoA synthetase FT TR:Q9Y1N2 (EMBL:AF107206) (726 aa) fasta scores: E(): FT 8.7e-33, 27.75% id in 735 aa, and to Archaeoglobus fulgidus FT conserved hypothetical protein Af1211 TR:O29057 FT (EMBL:AE001020) (685 aa) fasta scores: E(): 1.6e-41, 31.98% FT id in 691 aa" FT /protein_id="CAE41642.1" FT /translation="MNAVQRIGKLLNPSSIAIVGASPAPNKLAGQLIPALREGGYEGAI FT YPVNPRYQEVAGLRCFASVGDIPDEVDHCVIVVGKERVPQVLRDCCAKQVPGASIYISG FT YAEASGDGREAQRALEEAASALTFIGPNCMGFSNLTARVMAAPSAVLKRAEGVGDVALV FT SQSGGLAYATMAYYAQRDGLGFSHIVNTGNSAGVSYSDLIEYMFQDPATRVVLAVAEAE FT RAACEVIDAVHRLGLRKPVVLLKLGRGQTGTRMALSHTGSLAGDYRLVRDVAEQHGIAC FT ADDVDQVLGLCELLRHGFGAEHAEGIASLCISGGNITLFADQADAHGLGFAELDAATEA FT RLTAVLPDYISVHNPIDITALGYENPALHADVLDVLLTDAAVRTVVPILTTVDDYTEVC FT RLLADVRARTRCAMIALWNGGSYETRSREILREAAIPVFHSAALLAACLQRLRRAAGRR FT APMQAASAAPVADGALRALRESEAMQWLAGHGVAVPPLRACARAGLAEAAREVGYPLVI FT KADSADTHISDQDSVILNIRNDGELAQALERVAGWPDERVLAMRYLPGQELVAGVLAHP FT QLGQVLMVGSGGQWVELLKDVRFAALPASRDELADALAGTLVGRALHARFRGAAGFDEA FT VGLLAALAEAAVRAGPQVAQIELNPVTVGRHGAVAVDAAVYLRA" FT misc_feature 1424437..1424784 FT /note="HMMPfam hit to PF02629, CoA binding domain" FT CDS join(1426468..1426479,1426481..1427455) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1351" FT /product="putative exported protein (pseudogene)" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 9.3e-35, 38.08% id in 323 aa, and to Rhizobium meliloti FT conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 1.8e-32, 35.71% FT id in 308 aa" FT /db_xref="PSEUDO:CAE41643.1" FT misc_feature 1426496..1426546 FT /note="Signal peptide predicted for BP1351 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.996 between residues 17 and 18" FT CDS 1427481..1428278 FT /transl_table=11 FT /locus_tag="BP1352" FT /product="conserved hypothetical protein" FT /note="Similar to Aquifex aeolicus citrate synthase GltA or FT Aq_150 TR:O66541 (EMBL:AE000675) (259 aa) fasta scores: FT E(): 2.6e-17, 31.44% id in 229 aa, and to FT Methanothermobacter thermautotrophicus citrate synthase I FT Mth962 TR:O27043 (EMBL:AE000870) (280 aa) fasta scores: FT E(): 4.5e-16, 32.55% id in 258 aa" FT /protein_id="CAE41644.1" FT /translation="MNALTSDMGWSDARTIVVRGHDLNHEIIGHLNLGDFAFLEITGRK FT PDPQESTLFNALLAMLVEHGMTPTAMVARLTYLGAPESMQAAIAAGLCGMGTKFVGTAE FT GAARLLQEALPLGSEQALDIDATAQRIVAEQRAARQMLPGIGHPVHKPVDPRTTALFAL FT AERTGFHGRYVALMQALSAQAEKALGKPGVLPVNATGALAALASELGIAWQLCRGIAVI FT GRAVGLVGHIAEELRNPIAERLWVRTDAEVSAHLKPAPQEPRP" FT CDS 1428275..1429468 FT /transl_table=11 FT /locus_tag="BP1353" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti putative conserved FT membrane-anchored protein Smb21182 TR:CAC49248 FT (EMBL:AL603645) (394 aa) fasta scores: E(): 8.4e-39, 37.01% FT id in 389 aa, and to Streptomyces coelicolor putative FT racemase Scf41.21 TR:Q9RJU8 (EMBL:AL117387) (403 aa) fasta FT scores: E(): 3.5e-37, 38.06% id in 402 aa" FT /protein_id="CAE41645.1" FT /translation="MKLLSHIRVLDLGRFITAPLAGQLLGELGADVVKVESRDAIDPFR FT AFEGGLYGPHFQSHNRNKRSLALEFATPEGQAALRRLIAGADVVLLNMRPGAEHKLGLD FT YESLRALNPGLVYCSITGFGASGPYAHRPAFDNVGQALSGWLSMFHQGSDPRVPGPPVS FT DSLTGLYAAMGVLAALLERARSGQGRKVEVSMLESLIAFSNEPLGQLSAKGARPAHYGR FT ASLSQSYILTCADGLRIGLHLSSPEKFWRSLVEAIERPDLLARFPDRASRVDGYEALAR FT ELAAVFAQRERADWMRVLEAHDVPAAPERLLDELADDAQVRHLEVFQQLRHPRHGPVTA FT ANRAIRFDGDNHSAFAPPPAFGEHTLEVLVQAGFGAEDIERLHACGAIAATGHGAHA" FT misc_feature 1428470..1429033 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS 1429465..1430427 FT /transl_table=11 FT /locus_tag="BP1354" FT /product="putative exported protein" FT /note="Similar to Pseudomonas putida hypothetical 34.5 kDa FT protein in clcB-clcD intergenic region precursor FT SW:YCLC_PSEPU (Q47100) (329 aa) fasta scores: E(): 6.3e-30, FT 33.11% id in 308 aa, and to Alcaligenes eutrophus FT hypothetical 35.7 kDa protein MacB TR:Q9RBG2 FT (EMBL:AF130250) (340 aa) fasta scores: E(): 1.8e-29, 34.61% FT id in 312 aa" FT /protein_id="CAE41646.1" FT /translation="MKPNILQWALGAAFACVAAASTAQDYPARPVHLIVPYPPGGGTDV FT VARAVAQRLQAELGQPVVVESKPGASEIIGTGSVARAAPDGYTIGLVTSTYSINWVLDA FT SLPYKPAQFAAVAPLVGVPMLALVPAGSPVQDMAGLVAASRQAPGRMNYASLGPNSLQA FT MSTEWLKHLSGADLTAVAYKGAAPALVALSTGEVDFTFAGLGASRPMLDAGKVRALAIS FT TAQAFPPMPTLPPVAQAAPGYDVQIWYGLIAPAGVPPAILDRLNAALARVMDDAALRRQ FT FSDLGYVPTVMDRKAFEQFLQRDTLQWREMIGAAGIRAQ" FT misc_feature 1429465..1429533 FT /note="Signal peptide predicted for BP1354 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.969 between residues 23 and 24" FT misc_feature 1429480..1429512 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(1430445..1431485) FT /transl_table=11 FT /locus_tag="BP1355" FT /product="probable LacI-family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT repressor CytR or B3934 or Z5481 or Ecs4861 SW:CYTR_ECOLI FT (P06964) (341 aa) fasta scores: E(): 8.7e-25, 30% id in 350 FT aa, and to Streptomyces coelicolor probable LacI-family FT transcriptional regulator Scc57a.16 TR:Q9RDI2 FT (EMBL:AL136519) (347 aa) fasta scores: E(): 4e-27, 30.03% FT id in 323 aa" FT /protein_id="CAE41647.1" FT /translation="MAGIAARTNVTIKDIATRLKLSHATVSRALADHPKISAATKASVR FT EAAQAMGYVPNGTAQNMRTAHSPVIGLIVPDIQNDFYAAVAKIVADAAVARGFQLALSI FT TEDNPEREFNDLRAFVVSRAAGVIITPTIKPKPETIALLKGVRAIQLIRQHAAVAAEAV FT VIDERAATRAAAEHLIHYGHRRIAYVGTTTDLSLGEDRLSGFSSAMSKAGLDASLTAVG FT PPRVEFAHRAVHGLMSGPKPPTALIIGSSRLTVGALKALRGLGLSCPADVSVVGYGDPD FT WFELVGDGLTTVSPPVYPLGAYAINLLLARIQGEAVPAAADPAHATASRFPATLAIRGS FT TRPLAR" FT misc_feature complement(1430574..1431290) FT /note="HMMPfam hit to PF00532, Periplasmic binding proteins FT and sugar binding domain of the LacI family." FT misc_feature complement(1431381..1431464) FT /note="HMMPfam hit to PF00356, Bacterial regulatory FT proteins, lacI family" FT misc_feature complement(1431393..1431458) FT /note="Predicted helix-turn-helix motif with score 2000 FT (+6.00 SD) at aa 10-31, sequence VTIKDIATRLKLSHATVSRALA" FT CDS complement(1431473..1432081) FT /transl_table=11 FT /gene="leuD" FT /locus_tag="BP1356" FT /product="3-isopropylmalate dehydratase small subunit" FT /EC_number="4.2.1.33" FT /note="Similar to Escherichia coli 3-isopropylmalate FT dehydratase small subunit LeuD or B0071 SW:LEUD_ECOLI FT (P30126) (201 aa) fasta scores: E(): 3.6e-30, 46.15% id in FT 195 aa, and to Alcaligenes eutrophus 3-isopropylmalate FT dehydratase small subunit LeuD SW:LEUD_ALCEU (Q44022) (208 FT aa) fasta scores: E(): 1.7e-33, 48.03% id in 204 aa. Also FT similar to BP1482, 46.190% identity (48.259% ungapped) in FT 210 aa overlap." FT /protein_id="CAE41648.1" FT /translation="MQAFIRAHGIILPMNQDHVDTDAIIPQRWLVTVERDGLADGFMGA FT WRYDEHGQPRPECVLNQPAYQGAAIVLARENYGCGSSREHAVWAHQGYGIRAIVAASYG FT PIFHENCLKNGLLPVTLPAADVATLMAQALADPGCACEVDLVSQRVIGPDGRAYPFEID FT AGRRQLLLEGVDDIDLALARAADIAAFQRRQQQDQPWLA" FT misc_feature complement(1431575..1432081) FT /note="HMMPfam hit to PF00694, Aconitase C-terminal domain" FT CDS complement(join(1432083..1432481,1432469..1433500)) FT /pseudo FT /transl_table=11 FT /gene="leuC" FT /locus_tag="BP1357" FT /product="3-isopropylmalate dehydratase large subunit FT (Pseudogene)" FT /EC_number="4.2.1.33" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 344. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT 3-isopropylmalate dehydratase large subunit LeuC or B0072 FT SW:LEU2_ECOLI (P30127) (465 aa) fasta scores: E(): 2.6e-84, FT 49.35% id in 466 aa, and to Rhizobium meliloti probable FT 3-isopropylmalate dehydratase large subunit protein FT TR:CAC47785 (EMBL:AL591793) (469 aa) fasta scores: E(): FT 2.1e-85, 49.57% id in 466 aa. Also similar to BP1481 FT (51.983% identity in 479 aa overlap)" FT /db_xref="PSEUDO:CAE41649.1" FT misc_feature complement(join(1432113..1432481,1432469..1433446)) FT /note="HMMPfam hit to PF00330, Aconitase family (aconitate FT hydratase)" FT misc_feature complement(1432248..1432289) FT /note="ScanRegExp hit to PS01244, Aconitase family FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(1432419..1432469) FT /note="ScanRegExp hit to PS00450, Aconitase family FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT variation complement(1432476..1432479) FT /note="GGGC in pertussis; GGGC(GGGCCGTCCGCTGGCGGGC) in FT parapertussis and bronchiseptica" FT CDS 1433670..1434665 FT /transl_table=11 FT /locus_tag="BP1358" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 1.2e-42, 39.37% id in 320 aa, and to Comamonas FT testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 FT aa) fasta scores: E(): 1.4e-40, 38.87% id in 319 aa" FT /protein_id="CAE41650.1" FT /translation="MNSIKRVRGKTAALFAALGLWAAAVPAAGAATPYPERPIRLIVPF FT GAGGTTDILGRVLGQQLGEALKQTVIVENRPGANGNIGSDAVAKAAPDGYTLLFAADAT FT LVINPTLYSQLPFKPESDFAPISRIAVVPLVLVANPAVKADTLPELVKLGGKPDARLDF FT GSAGAGSMGHLVGERLNRATGMSMTHIPYKSGAQAISDVVSGQIPLLITGLAVAEPFLR FT DGKLKAIAVTSGQRFPGAPKVPTIAEGGVKDFDSPSWYGLLAPAGTPAPVLEKIHAALA FT SALQTEDMKKCMVELGAWPVVDTQAAFAELIKADTQRWSQIIQAAGITVQ" FT misc_feature 1433670..1433759 FT /note="Signal peptide predicted for BP1358 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.593 between residues 30 and 31" FT misc_feature 1433703..1433771 FT /note="1 probable transmembrane helix predicted for BP1358 FT by TMHMM2.0 at aa 12-34" FT CDS 1434685..1435863 FT /transl_table=11 FT /locus_tag="BP1359" FT /product="putative mandelate racemase" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4041 TR:Q9HWY6 (EMBL:AE004821) (389 aa) fasta FT scores: E(): 1.7e-54, 43.97% id in 382 aa, and to FT Sulfolobus tokodaii 373aa long hypothetical mandelate FT racemase St1108 TR:BAB66141 (EMBL:AP000985) (373 aa) fasta FT scores: E(): 1.9e-13, 28.92% id in 325 aa" FT /protein_id="CAE41651.1" FT /translation="MRITAIREIAVPLQGNISNSLVSFAEHTVSLVALVSDVVRDGRPL FT IGYAFDSIGRYAQPGLMRERFIPRLLQAAPHELLDDGGQAFDPARASAIMLRNEKPGGH FT GDRAAAVGALELAFWDLNAKLRDEPAYCTIARHVGRPAQAGATQVYAAGGYYYDSGDPL FT QRLRDEFRGYLDQGFVKFKMKIGGASLADDLARIEAALGVAGEGANLAVDANGRFDLDT FT ALAYARALEPYGLRWYEEIGDPLDYHLNSLVAQAYAGTIATGENLFSLPDVRNLLHFAG FT VRPGRDILQMDPGLSYGLTEYLRMMAAVEAAGFGRSCLHPHGGHLINLHIAAGLGLGGC FT EAYPGVFQPFGGYPAACALGAGQVRPTDAPGFGLEQKQELAPYISVLAHGKA" FT misc_feature 1434706..1435755 FT /note="HMMPfam hit to PF01188, Mandelate racemase / FT muconate lactonizing enzyme, C-terminal domain" FT CDS 1435874..1436791 FT /transl_table=11 FT /locus_tag="BP1360" FT /product="putative ketopantoate reductase" FT /EC_number="1.1.1.169" FT /note="Similar to Streptococcus pyogenes putative FT 2-dehydropantoate 2-reductase ApbA or Spy0852 TR:Q9A0B3 FT (EMBL:AE006535) (307 aa) fasta scores: E(): 7.2e-19, 29.04% FT id in 303 aa, and to Halobacterium sp Vng0730C TR:Q9HRF0 FT (EMBL:AE005017) (303 aa) fasta scores: E(): 3.1e-18, 31.04% FT id in 306 aa" FT /protein_id="CAE41652.1" FT /translation="MKIAIMGCGAMGSVYAGLLAANGHEVIAVDRWAEHVQAMSEQGLR FT VEGASGDRVARLRAYREAPAEPVDLIIIAVKAAQAGSAAAQARAMLGPDTLVLTIQNGL FT GSADSVAEAIGAERLAVGIAAAFGASLSGPGHVHHNGMSAVRMGAYAGLGAEKLDGIAE FT VWRGAGFNAQAVDNLPAMQWEKLICNVAYSAPCTLTGLTIGEVLDAPHASAVSQAAATE FT AWNVARALGVPVAVEDPVAHVRAFGERIRGAKPSVMLDHEQRRVSEIDYINGAIPRQAA FT RAGIQAPVNQTLTALVKQREEAWK" FT misc_feature 1435874..1435921 FT /note="Signal peptide predicted for BP1360 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.962) with cleavage site FT probability 0.386 between residues 16 and 17" FT misc_feature 1435877..1436239 FT /note="HMMPfam hit to PF02254, KTN NAD-binding domain" FT misc_feature 1436006..1436779 FT /note="HMMPfam hit to PF02558, Ketopantoate reductase FT PanE/ApbA" FT CDS complement(1436847..1437797) FT /transl_table=11 FT /locus_tag="BP1361" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41653.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR" FT repeat_region 1436847..1436878 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1436847..1437899) FT misc_feature complement(1436883..1437416) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1437474..1437539) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1437868..1437899) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1437896..1438666) FT /transl_table=11 FT /locus_tag="BP1362" FT /product="putative amino-acid ABC transporter, ATP-binding FT protein" FT /note="Similar to Rhizobium meliloti putative amino-acid FT ABC transporter ATP-binding protein Smc03894 TR:CAC47856 FT (EMBL:AL591793) (253 aa) fasta scores: E(): 1.3e-55, 69.91% FT id in 246 aa, and to Clostridium acetobutylicum amino acid FT ABC-type transporter, ATPase component Cac3327 TR:Q97DZ3 FT (EMBL:AE007829) (247 aa) fasta scores: E(): 1.3e-39, 49.59% FT id in 246 aa. Similar to several B. pertussis CDSs: BP1181, FT P3828, BP1534, BP1855, BP1575, BP0054, P0768, and BP1510." FT /protein_id="CAE41654.1" FT /translation="MIGLQGIDKSFGGNRVLHGVDVVIPEGSVTALIGPSGSGKSTLLR FT CVNLLEIPEAGVLRLGPETLAFDGRRPARDAVQRIRRQTGMVFQNFQLFPHQSVIDNVM FT EGLVTVQRWDKPRARARAMELLEKVGMTAKADAWPVTLSGGQQQRVAIARALAPSPRVL FT LCDEPTSALDPSLAIEVVDVLRRLAGEGMTMLMATHDLRLAASIAQQVVFLEGGAVVEA FT GTPREVFAQSRDARTAAFVSTLTQGLPEEWSAPA" FT misc_feature complement(1438016..1438588) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(1438199..1438243) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(1438544..1438567) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1438663..1439343) FT /transl_table=11 FT /locus_tag="BP1363" FT /product="putative amino-acid ABC transporter, permease FT protein" FT /note="Similar to Rhizobium meliloti putative amino-acid FT transport system permease ABC transporter protein Smc03893 FT TR:CAC47855 (EMBL:AL591793) (226 aa) fasta scores: E(): FT 1.2e-57, 71.3% id in 223 aa, and to Clostridium FT acetobutylicum amino acid ABC-type transporter, permease FT component Cac3326 TR:Q97DZ4 (EMBL:AE007829) (227 aa) fasta FT scores: E(): 3.2e-47, 64.95% id in 214 aa" FT /protein_id="CAE41655.1" FT /translation="MPAWLQLMLDSFWPLLHAGLMFTVPLTLLSFAAGLALAFVVALLR FT LFGPWPIVALMRFYVWLIRGTPLLVQLFVIFYGLPSVGIVLDPLPAALIGFTLNVGAYN FT SEVIRGAIESIPRGQWEAAYSLSMTRGQAMRRTVLPQAARVAVPPLANSFIALVKDTSL FT AAVLTVPEIFQAAQRIAAVTYEPLILYTEAALIYLVFSSALSSLQVRLEKRFGQHAVFA FT EQHR" FT misc_feature complement(1438801..1439013) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(join(1439107..1439172,1439212..1439277)) FT /note="2 probable transmembrane helices predicted for FT BP1363 by TMHMM2.0 at aa 22-44 and 57-79" FT misc_feature complement(1439230..1439343) FT /note="Signal peptide predicted for BP1363 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.635) with cleavage site FT probability 0.379 between residues 38 and 39" FT CDS complement(1439410..1440198) FT /transl_table=11 FT /locus_tag="BP1364" FT /product="putative amino-acid ABC transporter, periplasmic FT amino acid-binding protein" FT /note="Similar to Rhizobium loti amino acid ABC FT transporter, periplasmic amino acid-binding protein Mll3861 FT TR:Q98FA8 (EMBL:AP003002) (267 aa) fasta scores: E(): FT 1.8e-58, 65.88% id in 255 aa, and to Clostridium FT acetobutylicum periplasmic amino acid binding protein FT cac3325 TR:Q97DZ5 (EMBL:AE007829) (269 aa) fasta scores: FT E(): 1.5e-47, 57.85% id in 242 aa" FT /protein_id="CAE41656.1" FT /translation="MNFSLRKLLLAGLVPLAMIGTAVQADDLAAIKAAGVIKIGTEGTY FT APFSYHDASNKLTGFDVEIGRAIAQKLGVKAEFVEGKWDGLIAGLDVKRYDAVINQVGI FT TDARKAKYDFSDPYISSQAALIVREDNQAIKSFADLKGRKSANTLTSNFGKLAQSYGAE FT VVPVQGFNEAIDLLMSGRVEATVNDNLSFLDFKKQKPNAKVKVAAYDKSKEFSESGVLI FT RKNNPELQAAINKALAELKADGTYRKISEQYFGADLSAAQ" FT misc_feature complement(1439431..1440090) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT misc_feature complement(1439983..1440024) FT /note="ScanRegExp hit to PS01039, Bacterial extracellular FT solute-binding proteins, family 3 signature. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(1440124..1440198) FT /note="Signal peptide predicted for BP1364 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.953 between residues 25 and 26" FT repeat_region complement(1440403..1441604) FT /note="Truncated insertion sequence. This IS element lacks FT the 5' 42 bps. However, this deletion does not extend into FT the transposase coding sequence." FT CDS complement(1440445..1441461) FT /transl_table=11 FT /locus_tag="BP1365" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein ChnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /protein_id="CAE41657.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKAVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature complement(1440577..1440909) FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT misc_feature complement(1440922..1441209) FT /note="HMMPfam hit to PF01548, Transposase" FT CDS 1441767..1442921 FT /transl_table=11 FT /gene="flhB" FT /locus_tag="BP1366" FT /product="flagellar biosynthetic protein FlhB" FT /note="Similar to Salmonella typhimurium flagellar FT biosynthetic protein FlhB SW:FLHB_SALTY (P40727) (383 aa) FT fasta scores: E(): 2.7e-75, 54.04% id in 383 aa, and to FT Escherichia coli flagellar biosynthetic protein FlhB or FT B1880 SW:FLHB_ECOLI (P76299) (382 aa) fasta scores: E(): FT 6.6e-74, 54.54% id in 374 aa" FT /protein_id="CAE41658.1" FT /translation="MAEESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVAG FT VWLSGSMLYQGLTGVLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVA FT VLSAVLLGGFVFSTKPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWV FT IWHYHDDMLGLMHVAPSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRM FT TKEDVRQEHKEGEGDPHVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYAD FT GAAGAPRVVAKGTGLIAARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAV FT AEVLAWVFQLRSWRPGLGREPQAPTALVVPAELDPHSPTAAQGA" FT misc_feature 1441782..1442810 FT /note="HMMPfam hit to PF01312, FlhB HrpN YscU SpaS Family" FT misc_feature join(1441872..1441940,1442046..1442114,1442193..1442261, FT 1442319..1442387) FT /note="4 probable transmembrane helices predicted for FT BP1366 by TMHMM2.0 at aa 36-58, 94-116, 143-165 and FT 185-207" FT CDS join(1442925..1444235,1444239..1445042) FT /pseudo FT /transl_table=11 FT /gene="flhA" FT /locus_tag="BP1367" FT /product="flagellar biosynthesis protein FlhA (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Escherichia coli flagellar biosynthesis FT protein FlhA or B1879 SW:FLHA_ECOLI (P76298) (692 aa) fasta FT scores: E(): 1.4e-138, 65.24% id in 705 aa, and to FT Salmonella typhimurium flagellar biosynthesis protein FlhA FT SW:FLHA_SALTY (P40729) (692 aa) fasta scores: E(): FT 2.4e-138, 65.1% id in 705 aa. Also similar to BP2261, FT 36.510% identity (38.426% ungapped) in 682 aa overlap." FT /db_xref="PSEUDO:CAE41659.1" FT misc_feature join(1443003..1444235,1444239..1445006) FT /note="HMMPfam hit to PF00771, FHIPEP family" FT misc_feature 1443354..1443425 FT /note="ScanRegExp hit to PS00994, Bacterial export FHIPEP FT family signature. Confirmed by InterPro eMOTIF pattern FT match." FT variation 1444236..1444238 FT /note="TAG stop in pertussis; TGG in parapertussis and FT bronchiseptica" FT CDS join(1445039..1447237,1447236..1447409) FT /pseudo FT /transl_table=11 FT /gene="flhF" FT /locus_tag="BP1368" FT /product="flagellar biosynthesis protein FlhF (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 733. The frameshift occurs within FT a polymeric tract of (GC)4. The sequence has been checked FT and believed to be correct. Similar, over its N-terminal FT region, to Pseudomonas putida flagellar biosynthesis FT protein FlhF SW:FLHF_PSEPU (O52256) (437 aa) fasta scores: FT E(): 1.1e-24, 36.21% id in 439 aa" FT /db_xref="PSEUDO:CAE41660.1" FT misc_feature 1445450..1446199 FT /note="HMMPfam hit to PF00448, SRP54-type protein, GTPase FT domain" FT misc_feature 1445636..1445659 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT variation 1447229..1447236 FT /note="(GC)4 in pertussis; (GC)5 in parapertussis and FT bronchiseptica" FT CDS complement(1447427..1447909) FT /transl_table=11 FT /locus_tag="BP1370" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa FlgN TR:AAK31637 FT (EMBL:AY029221) (156 aa) fasta scores: E(): 3.5, 28.16% id FT in 142 aa" FT /protein_id="CAE41661.1" FT /translation="MNSAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQ FT RKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAAAHPELGPLWQALQANAAQAREH FT NQRNGTLIAVNLRHTQESLDALRQAAGTGAAATYDAQGRGKRGYSSAASGRAIVAT" FT CDS complement(1447927..1448217) FT /transl_table=11 FT /gene="flgM" FT /locus_tag="BP1371" FT /product="negative regulator of flagellin synthesis" FT /note="Similar to Escherichia coli negative regulator of FT flagellin synthesis FlgM or B1071 SW:FLGM_ECOLI (P43532) FT (97 aa) fasta scores: E(): 0.0023, 37.36% id in 91 aa, and FT to Salmonella typhimurium negative regulator of flagellin FT synthesis FlgM or FlgR or MviS SW:FLGM_SALTY (P26477) (97 FT aa) fasta scores: E(): 0.00074, 36.55% id in 93 aa" FT /protein_id="CAE41662.1" FT /translation="MKIQSSTSHPVGPNAVGARAEHAVAQAYGSGAQAGSGSAQVALSP FT ASRQLLAQEGGSDIDVERVAAIRAAIASGQLRIDPTRIADSLIASARDLLK" FT CDS complement(1448344..1449054) FT /transl_table=11 FT /gene="flgA" FT /locus_tag="BP1372" FT /product="flagella basal body P-ring formation protein" FT /note="Similar to Salmonella typhimurium flagella basal FT body P-ring formation protein FlgA precursor FlgA FT SW:FLGA_SALTY (P40131) (219 aa) fasta scores: E(): 1.2e-12, FT 33.01% id in 206 aa, and to Escherichia coli flagella basal FT body P-ring formation protein FlgA precursor FlgA or B1072 FT SW:FLGA_ECOLI (P75933) (219 aa) fasta scores: E(): 9.5e-13, FT 32.36% id in 207 aa" FT /protein_id="CAE41663.1" FT /translation="MKSPRSRSIARLAALAILAGAMPRAAAEPPAQDPAELAAAAESYL FT RQQLAALPGEPSITLDPLRSDRLDACEALTPFMPSGMRVRARMTVGLRCVAPRTWTVYA FT QATVSVPGQYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAAAILGMRPAHRIA FT AGQPIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPGATVQVRTASGQVV FT SGIVQAAGLVEIQL" FT misc_feature complement(1448977..1449054) FT /note="Signal peptide predicted for BP1372 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.647 between residues 26 and 27" FT CDS 1449238..1449645 FT /transl_table=11 FT /gene="flgB" FT /gene_synonym="flbA" FT /gene_synonym="fla FII" FT /locus_tag="BP1373" FT /product="flagellar basal-body rod protein FlgB" FT /note="Similar to Salmonella typhimurium flagellar FT basal-body rod protein FlgB or FlbA or Fla FII FT SW:FLGB_SALTY (P16437) (137 aa) fasta scores: E(): 5.6e-23, FT 50.74% id in 134 aa, and to Escherichia coli flagellar FT basal-body rod protein FlgB or FlbA or Fla FII or B1073 FT SW:FLGB_ECOLI (P75934) (137 aa) fasta scores: E(): 3.1e-25, FT 57.03% id in 135 aa" FT /protein_id="CAE41664.1" FT /translation="MLDRLNEDFRFFQQSIALRAQRQEVLSSNIANADTPNYKARDFDF FT KAAMQGALEQRMRLPDTNLALISARHIPGQATTPSPAELMYRLPYQPSLDGNTVDMDSE FT RVRFADNTLHYQSSLQVLSGRIRSLMSAIQE" FT misc_feature 1449262..1449354 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein" FT CDS 1449658..1450077 FT /transl_table=11 FT /gene="flgC" FT /gene_synonym="flaW" FT /gene_synonym="fla FIII" FT /locus_tag="BP1374" FT /product="flagellar basal-body rod protein FlgC" FT /note="Similar to Salmonella typhimurium flagellar FT basal-body rod protein FlgC or FlaW or Fla FIII FT SW:FLGC_SALTY (P16438) (134 aa) fasta scores: E(): 3.4e-31, FT 67.39% id in 138 aa, and to Yersinia enterocolitica FT flagellar basal-body rod protein FlgC SW:FLGC_YEREN FT (Q56894) (134 aa) fasta scores: E(): 4.1e-32, 72.46% id in FT 138 aa" FT /protein_id="CAE41665.1" FT /translation="MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRAR FT QVVFQVNPPAGQAFGQEIGGVRVAGVVEDQSPFKKIYDPKHPMADAQGYVNMPNVDPVA FT ETVNMIAASRSYQANVEVLNTAKQLMLKTLTIGQS" FT misc_feature 1449676..1449771 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein" FT misc_feature 1449694..1449756 FT /note="ScanRegExp hit to PS00588, Flagella basal body rod FT proteins signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 1450125..1450829 FT /transl_table=11 FT /gene="flgD" FT /gene_synonym="flaV" FT /gene_synonym="fla FIV" FT /locus_tag="BP1375" FT /product="basal-body rod modification protein FlgD" FT /note="Similar to Salmonella typhimurium basal-body rod FT modification protein FlgD or FlaV or Fla FIV SW:FLGD_SALTY FT (P16321) (232 aa) fasta scores: E(): 4.1e-31, 46.18% id in FT 223 aa, and to Escherichia coli basal-body rod modification FT protein FlgD or FlaV or Fla FIV or B1075 SW:FLGD_ECOLI FT (P75936) (231 aa) fasta scores: E(): 9.3e-31, 44.73% id in FT 228 aa" FT /protein_id="CAE41666.1" FT /translation="MTTVNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPL FT NPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVS FT LGADPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGN FT NDGGQPLADGKYSITVSASDADANPVKTEALTYGQVKSVAYSTNGLRLDLGLAGQISML FT DVRKVIGASGSA" FT misc_feature 1450125..1450193 FT /note="Signal peptide predicted for BP1375 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.780) with cleavage site FT probability 0.389 between residues 23 and 24" FT CDS 1450895..1452316 FT /transl_table=11 FT /gene="flgE" FT /gene_synonym="flaK" FT /gene_synonym="fla FV" FT /locus_tag="BP1376" FT /product="flagellar hook protein FlgE" FT /note="Similar to Salmonella typhimurium flagellar hook FT protein FlgE or FlaK or Fla FV SW:FLGE_SALTY (P16322) (402 FT aa) fasta scores: E(): 4e-24, 40.08% id in 479 aa, and to FT Escherichia coli flagellar hook protein FlgE or FlaK or Fla FT FV or B1076 SW:FLGE_ECOLI (P75937) (401 aa) fasta scores: FT E(): 1.8e-25, 40.08% id in 479 aa" FT /protein_id="CAE41667.1" FT /translation="MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYAS FT SRVGLGVKVSAINQRFTVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVD FT KNFYIVNAQGFRLTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVIDPN FT DTPPEDGLVELDGTTYRFTNAGGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLTSQPGY FT QPYKPLVAGIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYV FT LDGQAMQVNGGASQTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLEITVSYNGVTQ FT YGSDFAPKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPV FT GNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQT FT IKTQDEVMQVLMNMR" FT misc_feature 1450901..1450993 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein" FT CDS 1452355..1453119 FT /transl_table=11 FT /gene="flgF" FT /gene_synonym="flaX" FT /gene_synonym="fla FVI" FT /locus_tag="BP1377" FT /product="flagellar basal-body rod protein FlgF" FT /note="Similar to Salmonella typhimurium flagellar FT basal-body rod protein FlgF or FlaX or Fla FVI FT SW:FLGF_SALTY (P16323) (251 aa) fasta scores: E(): 3.1e-34, FT 48.01% id in 252 aa, and to Escherichia coli flagellar FT basal-body rod protein FlgF or FlaX or Fla FVI or B1077 FT SW:FLGF_ECOLI (P75938) (251 aa) fasta scores: E(): 6.6e-34, FT 48.01% id in 252 aa" FT /protein_id="CAE41668.1" FT /translation="MDRIIYTAMNGAARIAEHQTVLGNNMANVNTPGFREQIALYRSVP FT MADGTSLPTRVSTVASTPGNNFEMGNMMTTGRELDVALAGPGWFALQTPQGEAYTRAGA FT LQVGVNGLLQTATGQPVLSDQNAVIEVPDQASLTIASDGTVTAIGAGDPPNNILNLGRL FT KMVNPPPQQLVHGDDGVFRMPPQPGGQPAAPLPADPSQRLLSGVLEGSNASPMGAMVGM FT IQNARRFEMQMQVIREADKNAERANGILAAAS" FT misc_feature 1452367..1452459 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein" FT misc_feature 1452385..1452447 FT /note="ScanRegExp hit to PS00588, Flagella basal body rod FT proteins signature." FT CDS 1453163..1453948 FT /transl_table=11 FT /gene="flgG" FT /gene_synonym="flaL" FT /gene_synonym="fla FVII" FT /locus_tag="BP1378" FT /product="flagellar basal-body rod protein FlgG" FT /note="Similar to Salmonella typhimurium flagellar FT basal-body rod protein FlgG or FlaL or Fla FVII FT SW:FLGG_SALTY (P16439) (260 aa) fasta scores: E(): 3.2e-60, FT 67.05% id in 261 aa, and to Escherichia coli, and flagellar FT basal-body rod protein FlgG or FlaL or Fla FVII or B1078 or FT Z1716 or Ecs1456 SW:FLGG_ECOLI (P75939) (260 aa) fasta FT scores: E(): 7.2e-60, 66.66% id in 261 aa" FT /protein_id="CAE41669.1" FT /translation="MMRSLWVAKTGLEGQQTSMDVISNNLANVQTNGFKWGRAVFQDLM FT YQTLRQPGAQVGDANQLPSGLQLGMGVQVAATQRVFSQGNMNNTGGEMDIAIQGRGFLQ FT VELPDGTQAYTRDGSLQVDQNGQLTTAGGYVIQPPINVPDNALSLTIGKDGTVSVTQPG FT AAGTNVQIGQLQVATFINPTGLQSVGENLYLETDSSGPANLLQPGIDGAGQILQQYVET FT SNVNVAEELVNMITTQRAYEMNSKAVKTSDEMLARLTQL" FT misc_feature 1453175..1453267 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein" FT misc_feature 1453945..1454001 FT /note="Signal peptide predicted for BP1379 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.603 between residues 19 and 20" FT CDS 1453948..1454637 FT /transl_table=11 FT /gene="flgH" FT /gene_synonym="flaY" FT /gene_synonym="fla FVIII" FT /locus_tag="BP1379" FT /product="flagellar L-ring protein precursor" FT /note="Similar to Salmonella typhimurium flagellar L-ring FT protein precursor FlgH or FlaY or Fla FVIII SW:FLGH_SALTY FT (P15929) (232 aa) fasta scores: E(): 7.9e-37, 54.5% id in FT 233 aa, and to Escherichia coli flagellar L-ring protein FT precursor FlgH or FlaY or Fla FVIII or B1079 or Z1717 or FT Ecs1457 SW:FLGH_ECOLI (P75940) (232 aa) fasta scores: E(): FT 5.7e-36, 54.07% id in 233 aa" FT /protein_id="CAE41670.1" FT /translation="MLKTVLRLPVCAALLALAAGCAMIPPEPVVICPLTAPPPSPPQPS FT ARPNGSIYQPSAYGNYPLFEDRRPRNVGDIVTIVLEEKTNAAKGVATNTSRDGSATLGV FT AAAPRFMDGIINDKLDTDISGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAGE FT KQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADARIEYRSKGVMDEVQTMGWLQRF FT FLIASPF" FT misc_feature 1453978..1454010 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 1454008..1454631 FT /note="HMMPfam hit to PF02107, Flagellar L-ring protein" FT CDS 1454640..1455773 FT /transl_table=11 FT /gene="flgI" FT /gene_synonym="flaM" FT /gene_synonym="fla FIX" FT /locus_tag="BP1380" FT /product="flagellar P-ring protein precursor" FT /note="Similar to Salmonella typhimurium flagellar P-ring FT protein precursor FlgI or FlaM or Fla FIX SW:FLGI_SALTY FT (P15930) (365 aa) fasta scores: E(): 5.4e-81, 66.2% id in FT 364 aa, and to Escherichia coli flagellar P-ring protein FT precursor FlgI or FlaM or Fla FIX or B1080 SW:FLGI_ECOLI FT (P75941) (365 aa) fasta scores: E(): 8e-81, 66.47% id in FT 355 aa" FT /protein_id="CAE41671.1" FT /translation="MTFPTSLSVLLIPLARAVLALELLGAGAAHAERLKDLASIQGVRG FT NQLIGYGLVVGLDGSGDQVRQTLFTQQSLTNMLSQLGITVPQGSNMQLKNVAAVMVTAT FT LPSFARPGQTVDVVVSSMGNAKSLRGGTLLMTPLKGADNQVYVIAQGNLLVGGAGASAG FT GSSVQINQLNGGRISNGAIVERAVPTMYAQDGMVYLEMNNTDFGTTQNAATAINRQFGA FT GTAMALDGRVIQVRGPLDPSMMPAFMSQVENLQVARAPATAKVIINARTGSVVMNRTVM FT IEEAAVAHGNLSVIINRQNQVFQPDTPFTEGQTVVVPNTQIEVRQDGGALQRVTTSANL FT ADVVKALNALGATPQDLLAILQAMKTAGALRADLEII" FT misc_feature 1454640..1454699 FT /note="Signal peptide predicted for BP1380 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.783 between residues 20 and 21" FT misc_feature 1454736..1455770 FT /note="HMMPfam hit to PF02119, Flagellar P-ring protein" FT CDS 1455791..1456813 FT /transl_table=11 FT /gene="flgJ" FT /gene_synonym="flaZ" FT /gene_synonym="fla FX" FT /locus_tag="BP1381" FT /product="peptidoglycan hydrolase" FT /EC_number="3.2.1.-" FT /note="Similar to Salmonella typhimurium peptidoglycan FT hydrolase FlgJ or FlaZ or Fla FX SW:FLGJ_SALTY (P15931) FT (316 aa) fasta scores: E(): 3.9e-22, 42.58% id in 317 aa, FT and to Escherichia coli peptidoglycan hydrolase FlgJ or FT FlaZ or Fla FX or B1081 SW:FLGJ_ECOLI (P75942) (313 aa) FT fasta scores: E(): 3.9e-22, 40.56% id in 318 aa" FT /protein_id="CAE41672.1" FT /translation="MSFVSYTSRPGVQESVFDLGRLADLKRDAVKAPDGQRQQTEVARQ FT FEALFLQMMLKRMREATPKEGLFDSQQTEMLQGMADEQLALQLASPDIGLAQALLGQMQ FT QGQPPVPAAAAAGGDAAAARALAGTAAPAPLVRDLRGNYVQPDPAPRREVNALLDVLRS FT NRARDRAMAAAEGAPSHVVDFVSRMSRAANVAAQQSGVPARLILGQAALESGWGRRELR FT HEDGSTSYNLFGIKAGASWKGKVVNVMTTEYVDGVAQKLVQSFRAYSSYEESFSDYARL FT IGNSPRYEAAVTQAGNEIEAARRIQEAGYATDPRYAEKLISIMGQLRTSVARADFSGGL FT " FT misc_feature 1456328..1456786 FT /note="HMMPfam hit to PF01832, N-acetylmuramoyl-L-alanine FT amidase" FT CDS 1456883..1458529 FT /transl_table=11 FT /gene="flgK" FT /gene_synonym="flaS" FT /gene_synonym="flaW" FT /locus_tag="BP1382" FT /product="flagellar hook-associated protein 1" FT /note="Similar to Salmonella typhimurium flagellar FT hook-associated protein 1 FlgK or FlaS or FlaW FT SW:FLGK_SALTY (P15932) (552 aa) fasta scores: E(): 1.2e-68, FT 40.32% id in 558 aa, and to Escherichia coli flagellar FT hook-associated protein 1 FlgK or FlaS or FlaW or B1082 FT SW:FLGK_ECOLI (P33235) (546 aa) fasta scores: E(): 3.5e-70, FT 40.1% id in 551 aa" FT /protein_id="CAE41673.1" FT /translation="MNLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGA FT GETGQGFFGRGVQVDTVTRQYDSFLYRQLVGAQGSSAQLSTHLAQVSQVNNLFGDRTVG FT ITPALAGLFTSTNAAATKPADPAVRADMIGKANSLVTQINTAYQELENQRNGLNTQIST FT TVEQANSYLERINDLNKKIVIARGKDGHAPNDLLDQRDQAVSELNQLTGIRFYEQGDAF FT NITLQSGQTLLSGTTVYPLQAVPSASDPKRLTVAYTLPSGPGTTIQVEMNDSEVTGGQL FT GGLLSFRSQSLDAVQDQLGQLAIGLAMAFNAQHRQGYDLDGQPGGDMFGLQAPAAIRNS FT GNTSTGEWQSAYTDADAIRASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGL FT TLTGSGTPAAGDAWTLQPARDAARDLKQLISDPSKLALADSALGTTNGNNGLKLAELQT FT AKVLGNGSMSLNEMFSQLVNNVGVQTQQVSTANTAQANLVKQQATAHLSVSGVNLNEEY FT VNLTIFQEQYQASAKILDVASTVFDTLLGLR" FT CDS 1458563..1460095 FT /transl_table=11 FT /gene="flgL" FT /gene_synonym="flaT" FT /gene_synonym="flaU" FT /locus_tag="BP1383" FT /product="flagellar hook-associated protein 3" FT /note="Similar, over the N-terminal region, to Salmonella FT typhimurium flagellar hook-associated protein 3 FlgL or FT FlaT or FlaU SW:FLGL_SALTY (P16326) (317 aa) fasta scores: FT E(): 1.9e-21, 42.78% id in 194 aa, and to Pseudomonas FT aeruginosa flagellar hook-associated protein type 3 FlgL FT TR:Q9AGJ3 (EMBL:AF332547) (433 aa) fasta scores: E(): FT 2.4e-17, 28.29% id in 509 aa" FT /protein_id="CAE41674.1" FT /translation="MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLA FT AALAINVSQTSSMNSNYDANRKQAEQALGAQTNTLQSVVKNMQEMLKRVVEAGNGTMSD FT ADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDAATGKVTYNGDLGQ FT RGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNTGTGQYSAVSFDGPRAGNYV FT GRDFRIEFTRDAVTDELQYSVLSDPPVVPPEQPLPANMPYSEGSVIDMNGVSIKLSGQP FT EAGDVFTVETPKSWKMGVQGDAANTGSATLTPVSLPDGLTGKNLSVAFLDDGAGGLLYS FT VTSTPPDPSLPANVPVKPGDVIDIGGLKVKVDGQPAAGDTYAVTTPKSANVDVFDTLND FT LIGALDTPISGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGA FT QKVLSYVKQLSDLEDVNIYQATSDLLLRQVALQAASLALQRIQGNSLFSMGR" FT misc_feature 1458641..1459063 FT /note="HMMPfam hit to PF00669, Bacterial flagellin FT N-terminus" FT CDS 1460174..1461994 FT /transl_table=11 FT /gene="tsr" FT /gene_synonym="cheD" FT /locus_tag="BP1384" FT /product="methyl-accepting chemotaxis protein I" FT /note="Similar to Escherichia coli methyl-accepting FT chemotaxis protein I Tsr or Ched or B4355 SW:MCP1_ECOLI FT (P02942) (551 aa) fasta scores: E(): 1.4e-54, 46.18% id in FT 550 aa, and to Escherichia coli methyl-accepting chemotaxis FT protein II Tar or Chem or B1886 SW:MCP2_ECOLI (P07017) (553 FT aa) fasta scores: E(): 1.3e-53, 45.24% id in 557 aa" FT /protein_id="CAE41675.1" FT /translation="MWSNLKVRTCITLVLGLFLVAMLVSNGMAWLGMSSSNDKLERVNN FT AYSNQAVPAYDAYVMLLRARLNIVSSMMDLQEGRLKESADTLAHAQRQAGEARERFEAF FT LAVAKASSGADRVGAVETAFHAYLEVAARQMEAMQNQRLGEFVQLNPSAQRLNTAFDTA FT ASAYLDRIDTDTDALVDDARAEHLRANTVTLVLIVLALALCAGCGVFIGRAVLRPLKEA FT GQHFDRIAAGDLTARVDVRNSNEIGQLFAGLKRMEESLTRTVAAVRRGVDEINVGSREI FT SAGNTDLSSHTEEQAASLEETAASMEQLASTVKQNADNARQANQLAGVASDVAERGGSA FT VSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGE FT VRSLAQRSAQAAKEIKVLIEDSVGKVGTGSQQVERVGATMQEIVASVKRVTDIMGEISA FT ASEEQSSGIEQVNRAVSQMDEATQQNAALVEEAAAAAGSLQEQAQRLAEAVSVFRINAG FT EVIDVSARQLAQQRQAPRVAAAPASAAAPEAPPEPAPRLARPAARADVAAEAASVRRPA FT RRPAATEPAARTTAAPSRRRPPADNDWESF" FT misc_feature join(1460204..1460272,1460753..1460821) FT /note="2 probable transmembrane helices predicted for FT BP1384 by TMHMM2.0 at aa 28-50 and 211-233" FT misc_feature 1460750..1460959 FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature 1461245..1461427 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain" FT variation 1461755..1461757 FT CDS 1462115..1463734 FT /transl_table=11 FT /gene="tar" FT /gene_synonym="cheM" FT /locus_tag="BP1385" FT /product="methyl-accepting chemotaxis protein II" FT /note="Similar to Escherichia coli methyl-accepting FT chemotaxis protein II Tar or CheM or B1886 SW:MCP2_ECOLI FT (P07017) (553 aa) fasta scores: E(): 1.8e-64, 45.36% id in FT 529 aa, and to Escherichia coli methyl-accepting chemotaxis FT protein I Tsr or CheD or B4355 SW:MCP1_ECOLI (P02942) (551 FT aa) fasta scores: E(): 1.1e-62, 45.59% id in 522 aa" FT /protein_id="CAE41676.1" FT /translation="MFANLKVRTGLLLALVALALAALVSIALGWESVREGSRSLHALDS FT VSVQQGSLLKDAYAQMLRATIRADIAAVQRRGDAAGTLENERTVKQLMGEAKARIEAFR FT KVPKLSELGRSMETGLTSSFGSFAASLDEMMAALERNDDAAYLQLKNVKAGQASAAFAA FT RLGEFSTNLDKLSSETLAAHETRETIMLYVYAALLLLIVGVIAGSYLYMTRAVVRPLQR FT ASQQFERMAAGDLSARIEGNSRNEIGALLTALRHMQESLTRTVAAVRRGVDEINVGSRE FT ISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQANQLAASASDVAESGGS FT AVSEVVSTMDGISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAG FT EVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQEIVASVKRVTDIMGEIS FT AASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQEQAQRLAEAVSVFKINT FT GEVIEVPAHQLSGYAAPLVAQS" FT misc_feature 1462115..1462201 FT /note="Signal peptide predicted for BP1385 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.457 between residues 29 and 30" FT misc_feature join(1462142..1462210,1462685..1462753) FT /note="2 probable transmembrane helices predicted for FT BP1385 by TMHMM2.0 at aa 10-32 and 191-213" FT misc_feature 1462694..1462903 FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature 1463189..1463371 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain" FT CDS join(1463913..1464176,1464178..1465353) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1386" FT /product="methyl-accepting chemotaxis protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 88. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT methyl-accepting chemotaxis protein II Tar or CheM or B1886 FT SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 2.1e-43, FT 51.57% id in 318 aa, and to Escherichia coli FT methyl-accepting chemotaxis protein I Tsr or CheD or B4355 FT SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 4.7e-42, FT 52.17% id in 322 aa" FT /db_xref="PSEUDO:CAE41677.1" FT misc_feature 1463982..1464131 FT /note="HMMPfam hit to PF00989, PAS domain" FT variation 1464176..1464182 FT /note="GACGGCG in pertussis; (G)GACGGCG(G) in parapertussis FT and bronchiseptica" FT misc_feature 1464424..1464633 FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature 1464865..1465047 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain" FT repeat_region 1465385..1466615 FT /note="Insertion sequence" FT CDS 1465570..1466586 FT /transl_table=11 FT /locus_tag="BP1388" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein ChnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /protein_id="CAE41678.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature 1465822..1466109 FT /note="HMMPfam hit to PF01548, Transposase" FT misc_feature 1466122..1466454 FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT CDS complement(1466633..1467421) FT /transl_table=11 FT /gene="fliR" FT /gene_synonym="flaP" FT /locus_tag="BP1389" FT /product="flagellar biosynthetic protein FliR" FT /note="Similar to Escherichia coli flagellar biosynthetic FT protein FliR or FlaP or B1950 SW:FLIR_ECOLI (P33135) (261 FT aa) fasta scores: E(): 3.9e-43, 49.8% id in 259 aa, and to FT Salmonella typhimurium flagellar biosynthetic protein FliR FT or FlaP SW:FLIR_SALTY (P54702) (264 aa) fasta scores: E(): FT 2.5e-42, 49.41% id in 257 aa" FT /protein_id="CAE41679.1" FT /translation="MIAFTMEQLNGWLAQFLWPFVRILALVGAAPLFSESTIPTRVKIG FT LAFMLTIAVAPAIGPMPAVPPSSYAGLFLLSQQVLIGIALGLSMRVVFAAVQTAGEFVG FT LQMGLSFASFFDPATGANTAVLSRLFNIVAMLVFLALDGHLLVLGALVRSFDTLPVAVG FT VLDRNGWGILAEWGTTIFVSGLLLALPLICALLTINLAMGILNRAAPQLSVFAIGFPVS FT LIVGLVLLAIVLPHSGPFLERLFEQGLNTMNNVANGLAGK" FT misc_feature complement(1466663..1467403) FT /note="HMMPfam hit to PF01311, Bacterial export proteins, FT family 1" FT misc_feature complement(join(1466720..1466785,1466822..1466887, FT 1466969..1467034,1467134..1467199,1467230..1467295, FT 1467323..1467388)) FT /note="6 probable transmembrane helices predicted for FT BP1389 by TMHMM2.0 at aa 11-33, 42-64, 74-96, 129-151, FT 178-200 and 212-234" FT CDS complement(1467444..1467713) FT /transl_table=11 FT /gene="fliQ" FT /gene_synonym="flaQ" FT /locus_tag="BP1390" FT /product="flagellar biosynthetic protein FliQ" FT /note="Similar to Escherichia coli flagellar biosynthetic FT protein FliQ or FlaQ or B1949 or Z3039 or Ecs2688 FT SW:FLIQ_ECOLI (P33134) (89 aa) fasta scores: E(): 6e-17, FT 60.22% id in 88 aa, and to Salmonella typhimurium flagellar FT biosynthetic protein FliQ or FlaQ SW:FLIQ_SALTY (P54701) FT (89 aa) fasta scores: E(): 5.2e-17, 61.36% id in 88 aa" FT /protein_id="CAE41680.1" FT /translation="MTAETVMSMTYQALKVALALAGPLLLVTLIVGLVISIFQAATQIN FT EMTLSFIPKLLAMCGTLVLLGPWLLGLLTDYIRQLIGQIPMLVS" FT misc_feature complement(1467477..1467704) FT /note="HMMPfam hit to PF01313, Bacterial export proteins, FT family 3" FT misc_feature complement(join(1467498..1467563,1467609..1467674)) FT /note="2 probable transmembrane helices predicted for FT BP1390 by TMHMM2.0 at aa 13-35 and 50-72" FT misc_feature complement(1467594..1467713) FT /note="Signal peptide predicted for BP1390 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.889) with cleavage site FT probability 0.864 between residues 40 and 41" FT CDS complement(1467730..1468464) FT /transl_table=11 FT /gene="fliP" FT /gene_synonym="flaR" FT /locus_tag="BP1391" FT /product="flagellar biosynthetic protein FliP" FT /note="Similar to Escherichia coli flagellar biosynthetic FT protein FliP or FlaR or B1948 or Z3038 or Ecs2687 FT SW:FLIP_ECOLI (P33133) (245 aa) fasta scores: E(): 7e-59, FT 67.08% id in 240 aa, and to Salmonella typhimurium FT flagellar biosynthetic protein FliP or FlaR SW:FLIP_SALTY FT (P54700) (245 aa) fasta scores: E(): 4.5e-58, 67.66% id in FT 235 aa. Also similar to BP2240, 40.625% identity (44.175% FT ungapped) in 224 aa overlap." FT /protein_id="CAE41681.1" FT /translation="MAAVAVAAAALWPSGALAQATLPALTATPGPNGSETYSLSMQTLL FT LMTSLSFLPAALLMMTGFTRIIIVLGLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVF FT DKIYTDAYQPLAAGSIPFETAVERAGAPLHNFMLHQTRENDLTLFANLANLPAMEDPSQ FT VPMRILIPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKL FT MLFVLADGWHLLLGSLAQSFYQ" FT misc_feature complement(1467748..1468329) FT /note="HMMPfam hit to PF00813, FliP family" FT misc_feature complement(join(1467760..1467825,1467847..1467912, FT 1468153..1468209,1468246..1468311,1468405..1468464)) FT /note="5 probable transmembrane helices predicted for FT BP1391 by TMHMM2.0 at aa 20-42, 73-95, 107-126, 206-228 and FT 235-257" FT misc_feature complement(1467772..1467810) FT /note="ScanRegExp hit to PS01061, Flagella transport FT protein fliP family signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(1467907..1467954) FT /note="ScanRegExp hit to PS01060, Flagella transport FT protein fliP family signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(1468411..1468464) FT /note="Signal peptide predicted for BP1391 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.959 between residues 18 and 19" FT CDS complement(1468533..1468874) FT /transl_table=11 FT /gene="fliO" FT /gene_synonym="flbD" FT /gene_synonym="flaP" FT /locus_tag="BP1392" FT /product="flagellar protein FliO" FT /note="Similar to Escherichia coli flagellar protein FliO FT or FlbD or FlaP or B1947 SW:FLIO_ECOLI (P22586) (121 aa) FT fasta scores: E(): 2.8e-06, 36.36% id in 110 aa, and to FT Salmonella typhimurium flagellar protein FliO or FlbD or FT FlaP SW:FLIO_SALTY (P54699) (124 aa) fasta scores: E(): FT 2.1e-07, 37.61% id in 109 aa" FT /protein_id="CAE41682.1" FT /translation="MTESAVLRVVIGLALVIAAILVSAWLARRSGLIQRHGGALLRQVG FT GMSLGPRQRVVVLEIEGTWLVLGVTPNQLTTLHTLPAGQLPDPSPAAAGTFAAKLGQAL FT QRGHRVDRP" FT misc_feature complement(1468794..1468859) FT /note="1 probable transmembrane helix predicted for BP1392 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(1468806..1468874) FT /note="Signal peptide predicted for BP1392 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.646) with cleavage site FT probability 0.347 between residues 23 and 24" FT CDS complement(1468885..1469385) FT /transl_table=11 FT /gene="fliN" FT /gene_synonym="motD" FT /locus_tag="BP1393" FT /product="flagellar motor switch protein FliN" FT /note="Similar to Escherichia coli flagellar motor switch FT protein FliN or MotD or FlaN or B1946 SW:FLIN_ECOLI FT (P15070) (137 aa) fasta scores: E(): 1.3e-23, 61.53% id in FT 130 aa, and to Salmonella typhimurium flagellar motor FT switch protein FliN or MotD or FlaNf SW:FLIN_SALTY (P26419) FT (137 aa) fasta scores: E(): 3.7e-24, 63.84% id in 130 aa" FT /protein_id="CAE41683.1" FT /translation="MTDTNERPDQTGAGAPAPAADDWADALAEQNRAAAPTQADGLKPQ FT DDWADALAEQNAAPAAAAQSVFKPLATKETGQGTDIDLIMDVPVQMTVELGRTRLTIKN FT LLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDDKYGIRLTDIITPSERINRLN FT SRR" FT misc_feature complement(1468918..1469148) FT /note="HMMPfam hit to PF01052, Surface presentation of FT antigens (SPOA) protein" FT CDS complement(1469378..1470388) FT /transl_table=11 FT /gene="fliM" FT /gene_synonym="fla AII" FT /gene_synonym="fla QII" FT /gene_synonym="CheC2" FT /locus_tag="BP1394" FT /product="flagellar motor switch protein FliM" FT /note="Similar to Escherichia coli flagellar motor switch FT protein FliM or Fla AII or Fla QII or CheC2 or B1945 FT SW:FLIM_ECOLI (P06974) (334 aa) fasta scores: E(): 3.6e-66, FT 52.32% id in 323 aa, and to Salmonella typhimurium FT flagellar motor switch protein FliM or Fla AII or Fla QII FT or CheC2 SW:FLIM_SALTY (P26418) (334 aa) fasta scores: E(): FT 1.6e-67, 52.96% id in 321 aa" FT /protein_id="CAE41684.1" FT /translation="MAYEAFLSQDEVDALLAGVTGESDEKQPAGDEAGAPRAYDLSSPE FT RVVRRRMQTLELINERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVPSNLN FT MIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTL FT ESYGKSWDPVYPIEFEYVRSEMHTKFASITGNNEVVVVSPFHIEFGATGGDLNICLPYS FT MIEPVRDLLTRPLQDTALEEVDQRWAQQLQRQVRSADIDLVAEFGHIPSSIGELMRMKT FT GDVLPIAVPETVTAHVDGVPLMECGYGVFNGRYALRVQNLINYDDTDSNEAPDHD" FT misc_feature complement(1469414..1469638) FT /note="HMMPfam hit to PF01052, Surface presentation of FT antigens (SPOA) protein" FT misc_feature complement(1469696..1470274) FT /note="HMMPfam hit to PF02154, Flagellar motor switch FT protein FliM" FT CDS complement(1470391..1470939) FT /transl_table=11 FT /gene="fliL" FT /gene_synonym="fla AI" FT /gene_synonym="fla QI" FT /gene_synonym="cheC1" FT /locus_tag="BP1395" FT /product="flagellar protein FliL" FT /note="Similar to Escherichia coli flagellar protein FliL FT or Fla AI or Fla QI or CheC1 or b1944 or z3034 or ecs2683 FT SW:FLIL_ECOLI (P06973) (154 aa) fasta scores: E(): 2.7e-10, FT 43.92% id in 107 aa, and to Salmonella typhimurium FT flagellar protein FliL or Fla AI or Fla QI or CheC1 FT SW:FLIL_SALTY (P26417) (155 aa) fasta scores: E(): 2.4e-11, FT 39.26% id in 163 aa" FT /protein_id="CAE41685.1" FT /translation="MPPRTTLPLRPGGAGRLLRPLLMLLVLALVVAASVAGTWYFMKRM FT QPPVAVPVQLGVGQPQATPMQFVAPPATPPVVPAPIFIPLEAFTVTLQNADSERILHVG FT ITLRVSDEQTRQRIEKYMPEVRSRILMVLSSQSPQAVQTLQGKTEMAHAITEAVKRPFS FT PLPDGQYVTDALFTAFVVQ" FT misc_feature complement(1470814..1470879) FT /note="1 probable transmembrane helix predicted for BP1395 FT by TMHMM2.0 at aa 20-42" FT misc_feature complement(1470832..1470939) FT /note="Signal peptide predicted for BP1395 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.976) with cleavage site FT probability 0.663 between residues 36 and 37" FT CDS complement(join(1471105..1471332,1472385..1473353)) FT /pseudo FT /transl_table=11 FT /gene="fliK" FT /gene_synonym="flaE" FT /gene_synonym="flaR" FT /locus_tag="BP1398" FT /product="flagellar hook-length control protein FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Escherichia coli flagellar FT hook-length control protein FliK or FlaE or FlaR or B1943 FT SW:FLIK_ECOLI (P52614) (375 aa) fasta scores: E(): 1.4e-07, FT 30.02% id in 373 aa, and to Salmonella typhimurium FT flagellar hook-length control protein FliK or FlaE or FlaR FT SW:FLIK_SALTY (P26416) (405 aa) fasta scores: E(): 9e-08, FT 29.97% id in 407 aa" FT /db_xref="PSEUDO:CAE41686.1" FT misc_feature complement(1471147..1471317) FT /note="ScanRegExp hit to PS00430, TonB-dependent receptor FT proteins signature 1." FT CDS complement(1471333..1472283) FT /transl_table=11 FT /locus_tag="BP1397" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41687.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 1471333..1471364 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1471333..1472385) FT misc_feature complement(1471369..1471902) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1471960..1472025) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1472354..1472385) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT misc_feature complement(1472775..1472792) FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT CDS complement(1473485..1473931) FT /transl_table=11 FT /gene="fliJ" FT /gene_synonym="flaO" FT /gene_synonym="flaS" FT /locus_tag="BP1399" FT /product="flagellar protein FliJ" FT /note="Similar to Escherichia coli flagellar protein FliJ FT or FlaO or FlaS or B1942 SW:FLIJ_ECOLI (P52613) (147 aa) FT fasta scores: E(): 5.2e-10, 33.1% id in 145 aa, and to FT Salmonella typhimurium flagellar protein FliJ or FlaO or FT FlaS SW:FLIJ_SALTY (P26463) (147 aa) fasta scores: E(): FT 6e-10, 33.79% id in 145 aa" FT /protein_id="CAE41688.1" FT /translation="MPSQLPLDMLIGLAKDSTDEAARELGRLSAERNNAEQQLNMLQDY FT RQDYLQRMQTAMQSGMSAADCHNYQRFIATLDDAIGQQRHVLHRAEAHLNDGRLNWQQQ FT KRKLNSFDTLAQRESRTQALLEARREQRVNDEYSARLVRRQAGF" FT misc_feature complement(1473491..1473913) FT /note="HMMPfam hit to PF02050, Flagellar FliJ protein" FT CDS complement(1473924..1475357) FT /transl_table=11 FT /gene="fliI" FT /gene_synonym="fla AIII" FT /gene_synonym="flaC" FT /locus_tag="BP1400" FT /product="flagellum-specific ATP synthase FliI" FT /EC_number="3.6.3.14" FT /note="Similar to Escherichia coli flagellum-specific ATP FT synthase FliI or Fla AIII or FlaC or B1941 SW:FLII_ECOLI FT (P52612) (457 aa) fasta scores: E(): 4.1e-87, 64.95% id in FT 468 aa, and to Salmonella typhimurium flagellum-specific FT ATP synthase FliI or Fla AIII or FlaC SW:FLII_SALTY FT (P26465) (456 aa) fasta scores: E(): 4.1e-87, 65.58% id in FT 462 aa" FT /protein_id="CAE41689.1" FT /translation="MPVADRWQTQLQIGSIRAASTEPWLVSGRITRAAGLVLHTTGLRL FT PVGAACRIELARGHDHWADAEVVGFDGHTLYLMPQSDISGLPPGARVVPAEPAVQRPVP FT LPRKAELNGNAKPQVGRHLPVGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPINPL FT SRAPIDSVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLI FT GERGREVKEFIEHNLGPEGLARSVVVAAPADVSPLLRLQGASYATRLAEHFRDQGLDVL FT LIMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPALVERTGMGAPGPNGKAGSIT FT AFYTVLAEGDDQQDPIADSARAILDGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITT FT EQFQQVRRFKQILSRYQRNRDLISVGAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVD FT YGTAIDQLQRSLETREAYA" FT misc_feature complement(1474185..1475261) FT /note="HMMPfam hit to PF00006, ATP synthase alpha/beta FT family, nucleotide-binding domain" FT misc_feature complement(1474188..1474217) FT /note="ScanRegExp hit to PS00152, ATP synthase alpha and FT beta subunits signature." FT misc_feature complement(1474752..1474775) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(1475396..1476151) FT /transl_table=11 FT /gene="fliH" FT /gene_synonym="fla BIII" FT /gene_synonym="fla AII.3" FT /locus_tag="BP1401" FT /product="flagellar assembly protein FliH" FT /note="Similar to Escherichia coli flagellar assembly FT protein FliH or Fla BIII or Fla AII.3 or B1940 FT SW:FLIH_ECOLI (P31068) (228 aa) fasta scores: E(): 4.8e-14, FT 29.77% id in 225 aa, and to Salmonella typhimurium FT flagellar assembly protein FliH or Fla BIII or Fla AII.3 FT SW:FLIH_SALTY (P15934) (235 aa) fasta scores: E(): 7.2e-15, FT 31.85% id in 226 aa" FT /protein_id="CAE41690.1" FT /translation="MSEALAREPVALPRSAAWRRWQMLSFDEPAEAETPEPAALEPEPE FT PAPDPEELLREWRATAERAGHAAGHQAGQEQGQREGYAAGHAQGLAAGRAEGHAEGLAQ FT GREDARQQAERLHALAQACAASVARLEDNMGQSLLTLALDIAGQVLRTTLAEHPEAMVA FT AVREVLQINPATGAAMRLWVHPDDLELVRTHLADELNEANWRLQADESITRGGCRTETA FT YGDVDATLQTRWRRVAASLGRSAAWEETA" FT misc_feature complement(1475438..1475959) FT /note="HMMPfam hit to PF02108, Flagellar assembly protein FT FliH" FT CDS complement(1476144..1477154) FT /transl_table=11 FT /gene="fliG" FT /gene_synonym="fla BII" FT /gene_synonym="fla AII.2" FT /locus_tag="BP1402" FT /product="flagellar motor switch protein FliG" FT /note="Similar to Escherichia coli flagellar motor switch FT protein FliG or Fla BII or Fla AII.2 or b1939 or z3029 or FT ecs2678 SW:FLIG_ECOLI (P31067) (331 aa) fasta scores: E(): FT 1.7e-70, 61.39% id in 329 aa, and to Salmonella typhimurium FT flagellar motor switch protein FliG or Fla BII or Fla AII.2 FT SW:FLIG_SALTY (P15933) (331 aa) fasta scores: E(): 6.3e-70, FT 60.48% id in 329 aa" FT /protein_id="CAE41691.1" FT /translation="MKNDGKPLDGMTRSAVLMMSLGEDAAAEVFKYLSAREVQQVGAAM FT ASLKQVTRGDVAVVLEEFRQEADQFMAVTLGSDDYIRTVLTKALGSDRAAGLIEDILEA FT GEGGSGIDALNWLDPHTVAELIGDEHPQIIATILVHLERDRAASVLAMLSERMRNDVML FT RIATFGGVQPAALSELTDVLNSVLAGQGAKRSKMGGVRTAAEILNMMNSSQEEAVVESL FT RERDSDLAQKIIDEMFVFDNLLDVEDRAIQLILKEIDNDTLMVALKGAGDELRNKFLRN FT MSSRAAEMLREDLEAQGPIRMSKVEGEQKKILQIARRLAESGQIVLGTQGDDAYV" FT misc_feature complement(1476171..1476500) FT /note="HMMPfam hit to PF01706, FliG C-terminal domain" FT CDS complement(1477144..1478820) FT /transl_table=11 FT /gene="fliF" FT /gene_synonym="fla BI" FT /gene_synonym="fla AII.1" FT /locus_tag="BP1403" FT /product="flagellar M-ring protein FliF" FT /note="Similar to Escherichia coli flagellar M-ring protein FT FliF or Fla BI or Fla AII.1 or B1938 SW:FLIF_ECOLI (P25798) FT (552 aa) fasta scores: E(): 7.9e-61, 46.15% id in 572 aa, FT and to Salmonella typhimurium flagellar M-ring protein FliF FT or Fla BI or Fla AII.1 SW:FLIF_SALTY (P15928) (559 aa) FT fasta scores: E(): 1.1e-62, 45.84% id in 554 aa" FT /protein_id="CAE41692.1" FT /translation="MNQQATLSASLMARFPVLEKLRALPKPVLLGAAAALIAVVAAVAM FT WSREPDYKVLFSNLDDRDGGAIVSALDQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ FT GLPRGGSVGFELLDNTRFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPRQ FT SLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS FT APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSE FT VYRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPPANAQAPIVNPPAVAGTPQ FT QQQQQRAQQQAAGATTTQTQQGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVA FT VVVNYLPNKEGESEALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLW FT RDPELIAMIKTALGWLFGLILAFWLYRKIRPVVTDYFYPQVDPEVAAAQRQEAEREAQA FT AARTREVNRYEDNLQLARDMAGKDPRAVAMVLRSWMSKDEK" FT misc_feature complement(join(1477366..1477431,1478680..1478736)) FT /note="2 probable transmembrane helices predicted for FT BP1403 by TMHMM2.0 at aa 28-47 and 463-485" FT misc_feature complement(1478134..1478760) FT /note="HMMPfam hit to PF01514, Secretory protein of FT YscJ/FliF family" FT misc_feature complement(1478689..1478820) FT /note="Signal peptide predicted for BP1403 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.842) with cleavage site FT probability 0.543 between residues 44 and 45" FT CDS 1479133..1479465 FT /transl_table=11 FT /gene="fliE" FT /gene_synonym="flaN" FT /gene_synonym="fla AI" FT /locus_tag="BP1404" FT /product="flagellar hook-basal body complex protein FliE" FT /note="Similar to Escherichia coli flagellar hook-basal FT body complex protein FliE or FlaN or Fla AI or B1937 or FT Z3027 or Ecs2676 SW:FLIE_ECOLI (P25797) (103 aa) fasta FT scores: E(): 3e-12, 47.22% id in 108 aa, and to Salmonella FT typhimurium flagellar hook-basal body complex protein FliE FT or FlaN or Fla AI SW:FLIE_SALTY (P26462) (103 aa) fasta FT scores: E(): 1.9e-11, 45.79% id in 107 aa" FT /protein_id="CAE41693.1" FT /translation="MAVSGLSGIESMLSQMRAVVRAAQSGGATEAELAPGPSGFAAELQ FT RSIRSVSQAQNAASDQAKAFELGAPGISLNDVMIDLQKASLGFQTSVQVRNRLVAAYKE FT ISSMAV" FT misc_feature 1479217..1479462 FT /note="HMMPfam hit to PF02049, Flagellar hook-basal body FT complex protein FliE" FT CDS complement(1479479..1479874) FT /transl_table=11 FT /locus_tag="BP1405" FT /product="hypothetical protein" FT /note="no significant database matches" FT /protein_id="CAE41694.1" FT /translation="MTAQDQIVVLTQSDQIRSTLQERRHPDCQIVISGIDQRPWPVRIL FT GPDAKDGYFFWRPLDQACPDPVMLARMADEDEPPLAFHAQTADGARIHFCVDSPVTLRF FT GDGSIAVLSLFPSAVRHTCARPPQAPA" FT CDS complement(1479884..1480210) FT /transl_table=11 FT /locus_tag="BP1406" FT /product="putative flagellar protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1473 TR:Q9I3N9 (EMBL:AE004576) (111 aa) fasta FT scores: E(): 2e-07, 43.18% id in 88 aa, and to Bacillus FT subtilis YlqH protein TR:O34867 (EMBL:AJ000975) (93 aa) FT fasta scores: E(): 2.7e-07, 42.68% id in 82 aa" FT /protein_id="CAE41695.1" FT /translation="MNTPAPPTPATADADPNRPVAVALSYDGGEAAPRVVAKGYGQLAD FT TIVRTAREHGLHVHESRELVGLLMQVDLDAHIPPQLYTAVAELLAWLYRLEARELPEAL FT APRA" FT CDS complement(join(1480207..1480536,1480541..1481482)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1407" FT /product="hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 314. The frameshift occurs within FT a dimeric tract of (CCAA)2. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa polyhydroxyalkanoate synthesis protein PhaF or FT Pa5060 TR:Q9HUC3 (EMBL:AE004919) (309 aa) fasta scores: FT E(): 0.002, 27.77% id in 270 aa, and to Xenopus laevis skin FT secretory protein Xp2 precursor SW:XP2_XENLA (P17437) (439 FT aa) fasta scores: E(): 0.0015, 34.42% id in 244 aa" FT /db_xref="PSEUDO:CAE41696.1" FT variation complement(1480538..1480545) FT /note="(CCAA)2 in pertussis; (CCAA)1 in parapertussis" FT CDS complement(1481479..1481829) FT /transl_table=11 FT /gene="fliT" FT /locus_tag="BP1408" FT /product="flagellar protein FliT" FT /note="Similar to Salmonella typhimurium flagellar protein FT FliT SW:FLIT_SALTY (P26611) (122 aa) fasta scores: E(): FT 0.0035, 26.78% id in 112 aa, and to Escherichia coli FT flagellar protein FliT or B1926 or Z3016 or Ecs2665 FT SW:FLIT_ECOLI (P26610) (121 aa) fasta scores: E(): 0.009, FT 28.94% id in 114 aa" FT /protein_id="CAE41697.1" FT /translation="MTALTQHAPVLEIYQDIANLTSRMLAAANASNWDLVLNHGQEYVC FT LVERLRELEPGEPLDEAARGMKFDLLVRILENDAAVRDLALPQLARLSDLLGRMKRQQS FT LLATYSGKANGT" FT CDS complement(1481877..1482305) FT /transl_table=11 FT /gene="fliS" FT /locus_tag="BP1409" FT /product="flagellar protein FliS" FT /note="Similar to Salmonella typhimurium flagellar protein FT FliS SW:FLIS_SALTY (P26609) (135 aa) fasta scores: E(): FT 4.5e-19, 47.86% id in 117 aa, and to Escherichia coli FT flagellar protein FliS or B1925 SW:FLIS_ECOLI (P26608) (136 FT aa) fasta scores: E(): 1.8e-11, 33.33% id in 123 aa" FT /protein_id="CAE41698.1" FT /translation="MTYAARRPTGSYSVKSYSDIGLETQVMSATPERLITLLYAGARAA FT IAQARLHLEAGRIVERGQAIGKAIRIVDEGLKLGLNQNAGGEVAANLARLYDYITRTLL FT TANLKADKEQLDIADRLLADLSEAWQASVDHPAPAVPA" FT misc_feature complement(1481898..1482272) FT /note="HMMPfam hit to PF02561, Flagellar protein FliS" FT CDS complement(1482313..1483686) FT /transl_table=11 FT /gene="fliD" FT /gene_synonym="flbC" FT /gene_synonym="flaV" FT /locus_tag="BP1410" FT /product="flagellar hook-associated protein 2" FT /note="Similar to Escherichia coli flagellar FT hook-associated protein 2 FliD or FlbC or FlaV or B1924 FT SW:FLID_ECOLI (P24216) (467 aa) fasta scores: E(): 1.8e-32, FT 35.24% id in 471 aa, and to Salmonella typhimurium FT flagellar hook-associated protein 2 FliD or FlbC or FlaV FT SW:FLID_SALTY (P16328) (466 aa) fasta scores: E(): 6.2e-27, FT 34.18% id in 471 aa" FT /protein_id="CAE41699.1" FT /translation="MATISSLGSSGLELEGILEKLQAAEEKKLTLITARQASYETRISA FT YSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSGDGLSVKTAAGAVPGQYTVNIDKLATA FT QNLQSGQLDSRTDKHGTGGSIEIVQKDGTTTTVTLGEDTSLNGIVKAINGTDGLDVRAT FT VISDGNGKHYLMLNNKTEGTETAVTRITVSGNQEVADILDFDAANAGASNLTVQLAAQK FT AELTINGIPVVSDTNTVETAIDGLTLTLTKQSAAPLTVTVSSDPSVAATAVNDFVKAYN FT GLQTTIADLTAFDVKAEKQSALTGDGTTRNIQSAIAAALRVATGEGTLRTLSQLGITTD FT PKTGSLKTDTEKLEAALRDNPADVARIFSGPFGLGEKVKLATEQILGDEGSIKIRQEGL FT EETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQFAALSGTKK" FT misc_feature complement(1482367..1483662) FT /note="HMMPfam hit to PF02465, Flagellar hook-associated FT protein 2" FT CDS complement(1483827..1484204) FT /transl_table=11 FT /gene="flaG" FT /locus_tag="BP1411" FT /product="putative flagellar protein" FT /note="Similar to Pseudomonas aeruginosa FlaG TR:O33420 FT (EMBL:L81176) (128 aa) fasta scores: E(): 0.033, 31.35% id FT in 118 aa, and to Riftia pachyptila endosymbiont FlaG FT TR:Q9ZFD5 (EMBL:AF105060) (115 aa) fasta scores: E(): FT 0.049, 28.42% id in 95 aa" FT /protein_id="CAE41700.1" FT /translation="MAVSPINAAAPALVSVAPAPVPAQPAAAVAPAAAAANGGGAQSAT FT QDQYGAPKLPMDRALEEINAQLKAWSTQLQFEIDPDVHQVVVSIVDAETGDVLRTIPSE FT AVIRIAKMIVKMQGNAVETTA" FT CDS 1484467..1485774 FT /transl_table=11 FT /gene="folC" FT /gene_synonym="dedC" FT /locus_tag="BP1412" FT /product="FolC bifunctional protein [includes: FT folylpolyglutamate synthase and dihydrofolate synthase]" FT /EC_number="6.3.2.17" FT /note="Similar to Escherichia coli FolC bifunctional FT protein [includes: folylpolyglutamate synthase and FT dihydrofolate synthase] FolC or DedC or B2315 SW:FOLC_ECOLI FT (P08192) (422 aa) fasta scores: E(): 4.1e-62, 48% id in 427 FT aa, and to Neisseria gonorrhoeae FolC bifunctional protein FT [includes: folylpolyglutamate synthase and dihydrofolate FT synthase] FolC TR:Q50990 (EMBL:Z68205) (424 aa) fasta FT scores: E(): 1.8e-72, 49.18% id in 429 aa" FT /protein_id="CAE41701.1" FT /translation="MSTSRPDASADLPAWLQYLESIHAKAIDLGLDRVRQVAGRLDLSL FT DGVNFVVGGTNGKGSTCAMLESILLAAGYRVGLYTSPHLIDFNERARINGEIASDAALV FT QQFEAVEAARGDVSLTYFEFTTLAILRLFAQSRLDAVGLEVGLGGRLDAVNIVDADCSI FT ITSIDLDHTDWLGDTREKIGFEKAHIYRAGRPAICADPVPPQSLLDHVQAIGADLWLLG FT RDYNYSGDRQQWAYGGRAQRRNALAYPALRGANQLLNAAAALAALEAVRDRLPVPQQAV FT RLGLLQASLPGRFQILPGQPTVILDVAHNPHAAAVLAQNLDNMGFHPYTHAVFGMLADK FT NVDGVIARLGSRVDHWYCAGLPGPRGLDGQALAGHVRQVLPEAEGAAETPTVQACADPA FT AAYAAAREKAGEGDRIIVFGSFLTVASVLQALGRKI" FT misc_feature 1484611..1485399 FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain" FT misc_feature 1484614..1484685 FT /note="ScanRegExp hit to PS01011, Folylpolyglutamate FT synthase signature 1. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 1485967..1486665 FT /transl_table=11 FT /locus_tag="BP1413" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5052 TR:Q9HUC7 (EMBL:AE004918) (231 aa) fasta FT scores: E(): 0.00036, 35.71% id in 168 aa" FT /protein_id="CAE41702.1" FT /translation="MVLAAVIVLPMILDSEPVPVDSDIPIRVPDRNSAFQPTVNDPQAA FT APQPEQPAPQAPAGTPEAGAPQPPALASAPPQTPPPGQTPAQPQTPPAAQPPATPPQQA FT ATPPAAPKPEAKPEPKPAKPAAPARSDDGARAMALLEGRSPPPAQSKPAANGNFVLQVA FT SYTTQADAQARRGKLHQAGVTNAFVEQASINGKQQYRLRVGPFPSREAAQAAQARLRTL FT GYDNGFIAAQ" FT CDS 1486662..1487150 FT /transl_table=11 FT /gene="cvpA" FT /gene_synonym="dedE" FT /locus_tag="BP1414" FT /product="colicin V production protein" FT /note="Similar to Escherichia coli colicin V production FT protein CvpA or DedE or B2313 SW:CVPA_ECOLI (P08550) (162 FT aa) fasta scores: E(): 1.5e-10, 32.7% id in 159 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa3109 FT TR:Q9HZB0 (EMBL:AE004735) (180 aa) fasta scores: E(): FT 1.1e-13, 36.25% id in 160 aa" FT /protein_id="CAE41703.1" FT /translation="MTGFDFVVLTILAVSAVLGLVRGLLKEILSLLAYLLAFVAAIWWG FT PTVYVWLEPYIETALLRMGIAYAVVFIIVLLAVGLVNMTLAALIRTTGLTPADHGLGAM FT FGLARGLVLVLVLVALAGFTPLPQEDWWRDAMFSHSATEAVRQVKSWLPPSLATWLPY" FT misc_feature 1486668..1487114 FT /note="HMMPfam hit to PF02674, Colicin V production FT protein" FT misc_feature join(1486677..1486736,1486749..1486817,1486860..1486928, FT 1486962..1487030) FT /note="4 probable transmembrane helices predicted for FT BP1414 by TMHMM2.0 at aa 6-25, 30-52, 67-89 and 101-123" FT CDS 1487192..1488712 FT /transl_table=11 FT /gene="purF" FT /locus_tag="BP1415" FT /product="amidophosphoribosyltransferase" FT /EC_number="2.4.2.14" FT /note="Similar to Escherichia coli FT amidophosphoribosyltransferase PurF or B2312 SW:PUR1_ECOLI FT (P00496) (504 aa) fasta scores: E(): 4.5e-109, 60.04% id in FT 488 aa, and to Vibrio cholerae FT amidophosphoribosyltransferase Vc1004 TR:Q9KT99 FT (EMBL:AE004182) (504 aa) fasta scores: E(): 1.6e-117, 61.8% FT id in 487 aa" FT /protein_id="CAE41704.1" FT /translation="MCGIVGVIGRGPVNQLLYDSLLLLQHRGQDAAGIATLQGNHFNMY FT KAHGLVRDVFRTRNMRALPGTSGVGQVRYPTAGSSASEEEAQPFYVNAPFGIMFAHNGN FT LTNWRELRESLYRVDRRHINTNSDSEVLLNVLAHELQSAASGVSLDDDTIFRAVSAVHQ FT RVKGAYAVVAQISGYGMLAFRDPHGIRPLCIGRQETEEGVEWMAASESVALEGSGFAFV FT RDVEPGEAIFVDLDGRMTSRQCADNAQLVPCIFEYVYFARPDSLIDGVSVYDARLRMGE FT YLADKVARSMRLGDIDVVMPIPDSSRPAAMQLAHRLGLDYREGLIKNRYVGRTFIMPGQ FT AVRRKSVRQKLNAIGMEFKGKNVLLVDDSIVRGTTSREIVDMARAAGANKVYFASAAPP FT VRFPNVYGIDMPTQKELIATGRTDDEIARTIGADALIYQDLQDMQQAVRDINPRLSRFE FT ASCFDGEYVTGDITAEYLARLGQSRDSSAGDEEAGGLQFNMGYAANDA" FT misc_feature 1487192..1487209 FT /note="ScanRegExp hit to PS00443, Glutamine FT amidotransferases class-II active site." FT misc_feature 1487195..1487776 FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II" FT misc_feature 1487960..1488451 FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain" FT misc_feature 1488278..1488316 FT /note="ScanRegExp hit to PS00103, Purine/pyrimidine FT phosphoribosyl transferases signature. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(1488756..1489232) FT /transl_table=11 FT /gene="dsbB" FT /gene_synonym="roxB" FT /locus_tag="BP1416" FT /product="disulfide bond formation protein B" FT /note="Similar to Escherichia coli disulfide bond formation FT protein B DsbB or RoxB or B1185 or Z1948 or Ecs1680 FT SW:DSBB_ECOLI (P30018) (176 aa) fasta scores: E(): 3.1e-05, FT 28.47% id in 144 aa, and to Pseudomonas aeruginosa FT disulfide bond formation protein B 1 DsbB1 or Pa5256 FT SW:DSB1_PSEAE (P21482) (163 aa) fasta scores: E(): 8.3e-08, FT 30.57% id in 157 aa" FT /protein_id="CAE41705.1" FT /translation="MTRYRERLLFLIAILCFGAVGLALLSQHVFDMPPCAWCVLQRLIY FT LCIGVVALAGALAGAIAARLAAMLAALLAICGIVAAWYQYSVAAKMLSCDQTFADRFMS FT ATGLDGALPWLFGIYATCMDATVAVLGIEYAIWSLALFVIVLALALPAALRRNA" FT misc_feature complement(join(1488771..1488824,1488837..1488902, FT 1488966..1489031,1489047..1489103,1489143..1489208, FT 1489347..1489412,1489449..1489514,1489560..1489625, FT 1489704..1489760,1489773..1489838,1489887..1489952)) FT /note="11 probable transmembrane helices predicted for FT BP1416 by TMHMM2.0 at aa 15-37, 53-75, 79-98, 124-146, FT 161-183, 195-217, 263-285, 298-317, 322-344, 365-387 and FT 391-409" FT CDS complement(join(1489283..1489285,1489287..1489997)) FT /pseudo FT /transl_table=11 FT /gene="marC" FT /locus_tag="BP1416A" FT /product="putative multiple antibiotic resistance protein FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 237. Similar to Escherichia coli FT multiple antibiotic resistance protein MarC or B1529 FT SW:MARC_ECOLI (P31123) (221 aa) fasta scores: E(): 2e-13, FT 27.18% id in 217 aa, and to Salmonella typhimurium multiple FT antibiotic resistance protein MarC SW:MARC_SALTY (Q56068) FT (221 aa) fasta scores: E(): 8.3e-14, 30.14% id in 209 aa" FT /db_xref="PSEUDO:CAE41706.1" FT variation complement(1489286) FT /note="(C)TAA in pertussis (-)TAA (stop codon) in pertussis FT and bronchiseptica" FT misc_feature complement(1489335..1489967) FT /note="HMMPfam hit to PF01914, Uncharacterised protein FT family UPF0056" FT CDS complement(1490036..1492633) FT /transl_table=11 FT /gene="glnD" FT /locus_tag="BP1417" FT /product="[protein-PII] uridylyltransferase" FT /EC_number="2.7.7.59" FT /note="Similar to Escherichia coli [protein-PII] FT uridylyltransferase GlnD or B0167 SW:GLND_ECOLI (P27249) FT (890 aa) fasta scores: E(): 5.8e-103, 38.78% id in 825 aa, FT and to Pseudomonas aeruginosa [protein-pii] FT uridylyltransferase GlnD or Pa3658 SW:GLND_PSEAE (Q9Z9H0) FT (900 aa) fasta scores: E(): 5e-119, 40.86% id in 881 aa" FT /protein_id="CAE41707.1" FT /translation="MPHVDLNPLKQRMQAARAAAVAQFRQHPRPDMLLTELRRIVDQAL FT RELVKLCPLPAGATLAAVGSYGRGELYPHSDVDLLILLPQPPSAADARAVEALVAALWD FT LGLEPGHSVRTLEDCEREARGDITVETALLESRWLAGSRTLMKRLDSAMQARLDAAVFF FT QAKRVEMQQRHAHYQDTPYALEPNCKESPGGLRDLQVILWMARAAGFGHSWREVAQAGL FT LTSSEARDLRRAEQAFKRLRIELHLLTGRREDRVLFDLQPGLAAVYGIASTATRRASEL FT LMQRYYWAARLVTQLNVILVQNIEERLFPRPDSDARLIDDDFRNLRERLDIVREDGFER FT NPTLLLRAFLVMQQHPELIGMSARTLRAIWHSRHRIDAQFRRNPVNRKLFLQILQQPRG FT IVHELRRMTMLNILPRYLPVFRRIVGQMQHDLFHVYTVDQHTLAVVRNLRRFTMPEHAQ FT EYPLASQLIAGLDRHWLLYVAALFHDIAKGRGGDHSELGAREVRRFAQDHGLDPTDAEL FT VEFLVRHHLLMSAVAQKRDLSDPQVVRDFAAQVGDERRLAALYLLTVADIRGTSPRVWN FT AWKGKLLEDLFRLTLAALGGAHADAHTVLTERKDEAARLTRLAGLRDDAREAFWNQLDI FT AYFLRHDASEIAWHTRHLYYQVAPDEPVVRVRPTEHGEGLQVMVYTRDAPDLFVTTCGY FT FDAKSLSVQDARVHTTRHGWALDSFIVLAPEGFADLRAQATLVEHELAERLRDPHAARH FT AHAPRRLPHSHARRSRVFPVMPQAELSPDERSQSWRLSVTATDRPGLLYALARVFAEHG FT VDLIMAKIMTLGERVEDVFIVSGSALERPRSQMQFERAILDALAGDEPRQQAA" FT misc_feature complement(1490063..1490272) FT /note="HMMPfam hit to PF01842, ACT domain" FT misc_feature complement(1490399..1490611) FT /note="HMMPfam hit to PF01842, ACT domain" FT misc_feature complement(1490963..1491325) FT /note="HMMPfam hit to PF01966, HD domain" FT misc_feature complement(1492232..1492534) FT /note="HMMPfam hit to PF01909, Nucleotidyltransferase FT domain" FT CDS complement(1492663..1493484) FT /transl_table=11 FT /gene="map" FT /locus_tag="BP1418" FT /product="methionine aminopeptidase" FT /EC_number="3.4.11.18" FT /note="Similar to Escherichia coli, and methionine FT aminopeptidase Map or B0168 or Z0178 or Ecs0170 FT SW:AMPM_ECOLI (P07906) (264 aa) fasta scores: E(): 1.5e-53, FT 53.99% id in 263 aa, and to Xylella fastidiosa methionine FT aminopeptidase Xf0111 TR:Q9PH35 (EMBL:AE003865) (259 aa) FT fasta scores: E(): 5.7e-59, 60.08% id in 248 aa" FT /protein_id="CAE41708.1" FT /translation="MGIVTDPADLAKMRAACQDAAKILDFITPYVKPGVTTGELDKLCL FT AYLTDELKVKSATIGYAPPGYPPFTGAICTSVNHQVCHGIPGDKVLKNGDSLNIDVTII FT KDGWFGDTSRMYHVGEPSILSRRLTDITYDCMWKGIEQVRNGATLGDIGHAIQKYAEAQ FT GFSVVREFCGHGIGQRFHEDPQVLHYGKPGTGVKLVTGMLFTVEPMINAGRREIRQLAD FT GWTVVTRDHSLSAQWEHTVLVTDTGYEVLTVSPGMPAPPAFVTRPVEIPAL" FT misc_feature complement(1492738..1493478) FT /note="HMMPfam hit to PF00557, metallopeptidase family M24" FT misc_feature complement(1492918..1492974) FT /note="ScanRegExp hit to PS00680, Methionine aminopeptidase FT subfamily 1 signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 1494211..1494960 FT /transl_table=11 FT /gene="rpsB" FT /locus_tag="BP1419" FT /product="30S ribosomal protein S2" FT /note="Similar to Escherichia coli 30S ribosomal protein S2 FT RpsB or B0169 or Z0180 or Ecs0171 SW:RS2_ECOLI (P02351) FT (240 aa) fasta scores: E(): 5.1e-52, 61.3% id in 230 aa, FT and to Spirulina platensis 30S ribosomal protein S2 RpsB FT SW:RS2_SPIPL (P34831) (251 aa) fasta scores: E(): 2.9e-57, FT 62.14% id in 243 aa" FT /protein_id="CAE41709.1" FT /translation="MSLMREMLEAGVHFGHQTRYWNPKMAPYIFGHRNKIHIINLEQTV FT AKYQEASKFVKQLVARGGNILFVGTKRAARELVATEAARCGMPYVDARWLGGMLTNFKT FT VKSSIKRLKDMEAMVADGGFERMTKKEGLLFQRELDKLNKSIGGIKDMNGLPDALFVID FT VGYHKIAVAEAKVLGIPVVAVVDTNHSPDGIDHVIPGNDDSARAIALYAKGMADAVLEG FT REQNINGLVEEIGEGQEEFVEVQDNQA" FT misc_feature 1494220..1494255 FT /note="ScanRegExp hit to PS00962, Ribosomal protein S2 FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 1494229..1494879 FT /note="HMMPfam hit to PF00318, Ribosomal protein S2" FT CDS 1495144..1496022 FT /transl_table=11 FT /gene="tsf" FT /locus_tag="BP1420" FT /product="elongation factor Ts" FT /note="Similar to Escherichia coli elongation factor Ts Tsf FT or B0170 or Z0181 or Ecs0172 SW:EFTS_ECOLI (P02997) (282 FT aa) fasta scores: E(): 1.1e-40, 49.65% id in 286 aa, and to FT Neisseria meningitidis and elongation factor Ts Tsf or FT Nma0327 or Nmb2102 TR:Q9JRH4 (EMBL:AL162752) (284 aa) fasta FT scores: E(): 1e-47, 51.72% id in 290 aa" FT /protein_id="CAE41710.1" FT /translation="MAEITAALVKELREKTDAPMMECKKALTEAEGDLARAEEILRVKL FT GNKASKAAARVTAEGLIGLYIAADGKQGAVIEVNCETDFVAKNTDFIDFINKLAELVAT FT QNPADVAALSALPFGEGTVETTRTALVGKIGENISVRRFERIQTPNSLASYVHGGKIGV FT LVEFSGAEEVGKDLAMHIAATKPKALNADGVNAEDIAAERSVAEQKAAESGKPAEIVAK FT MVEGSVQKFLKEVTLLSQPFVKNDKQTIEQMLKEKGASITKFVLFVVGEGIEKKTADFA FT SEVAAAAAGRA" FT misc_feature 1495150..1495269 FT /note="HMMPfam hit to PF02094, TS-N domain" FT misc_feature 1495312..1495956 FT /note="HMMPfam hit to PF00889, Elongation factor TS" FT misc_feature 1495372..1495404 FT /note="ScanRegExp hit to PS01127, Elongation factor Ts FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 1496120..1496836 FT /transl_table=11 FT /gene="pyrH" FT /gene_synonym="smbA" FT /locus_tag="BP1421" FT /product="uridylate kinase" FT /EC_number="2.7.4.-" FT /note="Similar to Escherichia coli uridylate kinase PyrH or FT SmbA or B0171 or Z0182 or Ecs0173 SW:PYRH_ECOLI (P29464) FT (240 aa) fasta scores: E(): 2e-45, 55.41% id in 231 aa, and FT to Neisseria meningitidis uridylate kinase PyrH or Nma0326 FT or Nmb2103 TR:Q9JQT5 (EMBL:AL162752) (239 aa) fasta scores: FT E(): 2e-58, 69.82% id in 232 aa" FT /protein_id="CAE41711.1" FT /translation="MSSRSYKRVLLKLSGEALMGEDAFGINRSTIVRMTDEIAEVAALG FT VELAIVIGGGNIFRGVAPGAQGMDRATADYMGMMATIMNALALQDALKHKGVDTRVQSA FT LNIDQVVEPYIRPKALRYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEIGAEIVLKATK FT VDGIYSADPNKDPTATRYARISFDEVIVRRLEVMDATAFALCRDQKLPIKVFSINKSGA FT LKRAVSGEDEGTLVHV" FT misc_feature 1496174..1496689 FT /note="HMMPfam hit to PF00696, Amino acid kinase family" FT CDS 1496851..1497411 FT /transl_table=11 FT /gene="frr" FT /gene_synonym="rrf" FT /locus_tag="BP1422" FT /product="ribosome recycling factor" FT /note="Similar to Escherichia coli ribosome recycling FT factor Frr or Rrf or B0172 or Z0183 or Ecs0174 SW:RRF_ECOLI FT (P16174) (185 aa) fasta scores: E(): 3.4e-33, 57.69% id in FT 182 aa, and to Neisseria meningitidis ribosome recycling FT factor Frr or Nma0080 or Nmb0187 TR:Q9JR52 (EMBL:AL162752) FT (185 aa) fasta scores: E(): 2.1e-36, 59.78% id in 184 aa" FT /protein_id="CAE41712.1" FT /translation="MSVADIRKSAETRMAKSLETLKASLAKIRTGRAHTGILDHVQVEY FT YGSPVPISQVANVNLVDARTISVQPYEKSMAGPIEKAIRESDLGLNPVSMGETIRVPMP FT ALTEERRRDLTKVVKSEGEDAKVAVRNLRREANEALKKLVKDKEISEDDERRAQDDVQK FT LTDRAVGDIDKMIVQKEAEIMTV" FT misc_feature 1496908..1497402 FT /note="HMMPfam hit to PF01765, Ribosome recycling factor" FT CDS 1497578..1498342 FT /transl_table=11 FT /gene="uppS" FT /gene_synonym="rth" FT /locus_tag="BP1423" FT /product="undecaprenyl pyrophosphate synthetase" FT /EC_number="2.5.1.31" FT /note="Similar to Escherichia coli undecaprenyl FT pyrophosphate synthetase UppS or Rth or B0174 or Z0185 or FT Ecs0176 SW:UPPS_ECOLI (Q47675) (253 aa) fasta scores: E(): FT 7.5e-44, 51.4% id in 249 aa, and to Neisseria meningitidis FT undecaprenyl pyrophosphate synthetase Nmb0186 TR:Q9K1G6 FT (EMBL:AE002375) (248 aa) fasta scores: E(): 2.4e-50, 54.28% FT id in 245 aa" FT /protein_id="CAE41713.1" FT /translation="MALSSTQAIPETGDIPRHVAIIMDGNGRWATRRHLPRTAGHAKGV FT HAVRRVVEACGRRGVRYLTLFAFSSENWRRPADEVSLLMRLFVQALEREVDKLQDQGVR FT LHVVGDLSAFEPKLQELIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLRADPGL FT AQDPDRIDEARLAEHLSMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFWPDF FT GADELDAAFEWYRTRERRFGRTSAQLRGGAKR" FT misc_feature 1497641..1498306 FT /note="HMMPfam hit to PF01255, Putative undecaprenyl FT diphosphate synthase" FT CDS 1498362..1499219 FT /transl_table=11 FT /gene="cdsA" FT /gene_synonym="cds" FT /locus_tag="BP1424" FT /product="phosphatidate cytidylyltransferase" FT /EC_number="2.7.7.41" FT /note="Similar to Escherichia coli phosphatidate FT cytidylyltransferase CdsA or Cds or B0175 or Z0186 or FT Ecs0177 SW:CDSA_ECOLI (P06466) (249 aa) fasta scores: E(): FT 1.1e-15, 33.72% id in 255 aa, and to Haemophilus influenzae FT phosphatidate cytidylyltransferase CdsA or Cds or Hi0919 FT SW:CDSA_HAEIN (P44937) (288 aa) fasta scores: E(): 1.4e-19, FT 32.51% id in 286 aa" FT /protein_id="CAE41714.1" FT /translation="MLGQRIITAAVLLAVLALTLALANPWWFVALLALGAACAAWEWLR FT LTVRQPLSGALCVGLAAALLAAMLAMAQAWIQGGVSGLRLEVWVGYWLTPAVVAVWLLG FT AGTAVARGRADAPAASLGWTLFAIPAVLAAWSVLALMYLSRGGAYVVSLLALVWVADIA FT AYFAGRAFGKRKLAPRVSPGKTVAGAVAGVLGAVAWIALSSQWDGTYGQALVERWSWWL FT ALPAAALLGVVSIVGDLFESLLKRRAGRKDSSALLPGHGGVYDRIDAILPVAPLALLMS FT GVLF" FT misc_feature 1498362..1498430 FT /note="Signal peptide predicted for BP1424 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.637 between residues 23 and 24" FT misc_feature 1498365..1499216 FT /note="HMMPfam hit to PF01148, Phosphatidate FT cytidylyltransferase" FT misc_feature join(1498374..1498427,1498437..1498505,1498524..1498592, FT 1498620..1498688,1498722..1498790,1498803..1498862, FT 1498899..1498967,1499025..1499093) FT /note="8 probable transmembrane helices predicted for FT BP1424 by TMHMM2.0 at aa 5-22, 26-48, 55-77, 87-109, FT 121-143, 148-167, 180-202 and 222-244" FT misc_feature 1499085..1499165 FT /note="ScanRegExp hit to PS01315, Phosphatidate FT cytidylyltransferase signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 1499216..1500415 FT /transl_table=11 FT /gene="dxr" FT /locus_tag="BP1425" FT /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" FT /EC_number="1.1.1.-" FT /note="Similar to Escherichia coli 1-deoxy-D-xylulose FT 5-phosphate reductoisomerase Dxr or B0173 SW:DXR_ECOLI FT (P45568) (398 aa) fasta scores: E(): 1.4e-64, 51.4% id in FT 391 aa, and to Pseudomonas aeruginosa 1-deoxy-D-xylulose FT 5-phosphate reductoisomerase Dxr or Pa3650 SW:DXR_PSEAE FT (Q9KGU6) (396 aa) fasta scores: E(): 3e-77, 59.24% id in FT 395 aa" FT /protein_id="CAE41715.1" FT /translation="MTRFQRVAVLGSTGSIGDSTLDVIARHPDRLGVYALSAYSRMDKL FT AAQAAACGAAVVVVPDDAAAARFRAAWRGKAAMPEVRVGPRALAETAAAPECTTVMAAI FT VGAAGLPAALAAAQAGKRVLLANKEALVAAGSLFMAAVRENGAELLPIDSEHNAIFQCM FT PQGARAAAPTAPAPGVRRLLLTASGGPFRRQDPADLHEVTPAQACAHPNWSMGRKISVD FT SATMLNKGLEVIEAHWLFAMPSERIDVLIHPQSVVHSMVEYDDGSVLAQLGQPDMRTPI FT AYGLGFPERLASGVGLLDLTRWGRLDFEQPDLQRFPCLALSFAALRAGQPACVALNAAN FT EVAVAAFLEGRLRYTWIARVIEAVLEWQAKQASVTLTSLDDVLDLDARARSFAGNLGLA FT " FT misc_feature 1499234..1500394 FT /note="HMMPfam hit to PF02670, 1-deoxy-D-xylulose FT 5-phosphate reductoisomerase" FT CDS 1500455..1501789 FT /transl_table=11 FT /locus_tag="BP1426" FT /product="putative membrane protein" FT /note="Similar to Escherichia coli inner membrane protein FT EcfE TR:AAL01378 (EMBL:AF407012) (450 aa) fasta scores: FT E(): 4e-55, 40.17% id in 448 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa3649 TR:Q9HXY3 FT (EMBL:AE004785) (450 aa) fasta scores: E(): 7.8e-55, 43.45% FT id in 451 aa" FT /protein_id="CAE41716.1" FT /translation="MLFTLLAFVVALGTLITFHELGHYWIARLCGVRVLRFSVGFGRVL FT ARRTDRHGTEWAISAIPLGGYVKMQDDPPAGASAAEAARSFNAQPVGRRIAIVAAGPLF FT NLFLAVVLYAGLNLAGTEVPAPVVGQPAAGTPAAQAGLMAGDRIEAVQGRAVDSWNDAR FT WRLLDVLSSQGEAQLEVRGPGGAARGLVLQVPGGNRLDPADGDPLAETGLRLAQPKPVV FT REVIAGGAGEQAGLRGGDLIVAAGQAADLDAGALVALIQRHAGQPLALTVQRGADRLTL FT TVVPRAESVQGQEVGRIGVQLGGDIPMVTVRYGVIDSVWRGVQRTWDTAWLSLRMMGRM FT VLGEVSWRNISGPVTIADYAGQTARIGLKAYIAYLALISISLGVLNLLPIPMLDGGHLL FT YYLVEIVKGSPVSDRWIDIGQRAGIGLLAGLMGLALFNDFARLFT" FT misc_feature join(1500467..1500535,1500737..1500805,1501565..1501633, FT 1501706..1501774) FT /note="4 probable transmembrane helices predicted for FT BP1426 by TMHMM2.0 at aa 5-27, 95-117, 371-393 and 418-440" FT misc_feature 1500500..1500529 FT /note="ScanRegExp hit to PS00142, Neutral zinc FT metallopeptidases, zinc-binding region signature." FT misc_feature 1500983..1501279 FT /note="HMMPfam hit to PF00595, PDZ domain (Also known as FT DHR or GLGF)." FT CDS 1501842..1504178 FT /transl_table=11 FT /locus_tag="BP1427" FT /product="probable surface antigen" FT /note="Similar to Pseudomonas aeruginosa probable outer FT membrane protein Pa3648 TR:Q9HXY4 (EMBL:AE004784) (797 aa) FT fasta scores: E(): 7.3e-103, 39.77% id in 802 aa, and to FT Xylella fastidiosa outer membrane antigen Xf1046 TR:Q9PEI2 FT (EMBL:AE003941) (784 aa) fasta scores: E(): 1.9e-88, 37.58% FT id in 785 aa" FT /protein_id="CAE41717.1" FT /translation="MSLRRMFHHKKGVIPGLLAAALLAPALAHAFEPFVVRDIRVEGIQ FT RTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTDNNVVVVVVQERPTI FT ASISFNGMREFDSKAITKSLAQVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVEVTA FT TVTPLPRNRVGVSFDVFEGEVAKIREIRVVGSKAFSEGELLDQFDLTTPGWLTWYTNTD FT KYSREKLEGDIERLRSFYLDQGYLEFTVEPPQVTISPDRKDIYITITVHEGEPYKVREV FT KLAGNLMGLDSEINNLVEIKPGEVFSAAKANNSAKAITNYLGDLGYAFANVNPNPQLDR FT AKHEADVTFYVDPSRRVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRV FT DRLGYFNEVNVKTDPVPGSPDQVDVNVDVKEKPTGIINLGVGYGSSEKAILSAGISEDN FT VFGSGTNLTLQLNTSKTNRAVVLSHTDPYFTKDGISRTTSAYYRVTEPWDNNDGDYRVK FT AMGLGMNFGVPISEYDRIFLGGTFERNQIDLYNNSPQAYRDFVDQYGNSTNALIFNTGW FT SKDTRDSALAPTKGAYTRLKGDFSTMDLKYYLLTAQQQYYLPLGRSYTLALNGMIDYGR FT SYGGLDYPVIKNVYAGGIGTVRGYEGASLGPRDRLTGDYIGGSRRMVANAQLYLPFPGA FT SKDRTLRWFVFTDAGQVAAGSGMSCTAGKPDSEVEDPCGWRFSAGIGLSWQSPLGPLQL FT SYARPLNSKSGDDTQAFQFQIGTGF" FT misc_feature 1501842..1501931 FT /note="Signal peptide predicted for BP1427 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.755 between residues 30 and 31" FT misc_feature 1501869..1504175 FT /note="HMMPfam hit to PF01103, Bacterial surface antigen" FT misc_feature 1501875..1501934 FT /note="1 probable transmembrane helix predicted for BP1427 FT by TMHMM2.0 at aa 20-39" FT misc_feature 1503054..1503077 FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT misc_feature 1503966..1503998 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 1504304..1504867 FT /transl_table=11 FT /locus_tag="BP1428" FT /product="putative outer membrane protein" FT /note="Similar to Salmonella typhimurium outer membrane FT protein OmpH precursor OmpH SW:OMPH_SALTY (P16974) (161 aa) FT fasta scores: E(): 3.6e-06, 28.84% id in 156 aa, and to FT Neisseria meningitidis putative outer membrane protein FT Nma0086 TR:Q9JX30 (EMBL:AL162752) (166 aa) fasta scores: FT E(): 8.9e-13, 39.63% id in 164 aa" FT /protein_id="CAE41718.1" FT /translation="MMSDFALNTSGSKRAKRGAGKLGVSLALAGALLFGSSAAVTAQAQ FT GTKIGFVNTERILRESGPAKAAQSKIESEFKRRDDELQRLSSSLRSQAEKFDKDAPVLS FT ESDRVKRQRELSNLDMDLQRKRREFQEDFNRRRNEEFSSIVTKANDAIKRIAEQENYDL FT IIQDAVTVNPRIDITDKVIQSLGR" FT misc_feature 1504304..1504435 FT /note="Signal peptide predicted for BP1428 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.488 between residues 41 and 42" FT misc_feature 1504367..1504435 FT /note="1 probable transmembrane helix predicted for BP1428 FT by TMHMM2.0 at aa 38-60" FT CDS 1504876..1505967 FT /transl_table=11 FT /gene="lpxD" FT /gene_synonym="firA" FT /locus_tag="BP1429" FT /product="UDP-3-O-[3-hydroxymyristoyl] glucosamine FT N-acyltransferase" FT /EC_number="2.3.1.-" FT /note="Similar to Escherichia coli FT UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase FT LpxD or FirA or OmsA or B0179 SW:LPXD_ECOLI (P21645) (340 FT aa) fasta scores: E(): 4.1e-42, 43.27% id in 342 aa, and to FT Pseudomonas aeruginosa UDP-3-O-3-hydroxylauroyl LpxD or FT Pa3646 TR:Q9HXY6 (EMBL:AE004784) (353 aa) fasta scores: FT E(): 1.2e-48, 51.22% id in 328 aa" FT /protein_id="CAE41719.1" FT /translation="MPVLLDPENALALDVLLAGIDAQGLDWHLSAPDAADLPRIRGIGT FT LSSAGNEEISFLSNPRYQNQLATTRAAAVIVTPDVAQARQEQGASGHVLVVCKHPYLLY FT ARLAQWFERASRPAGPAGVHPSAVVDPSAEIDADVRVGAQCVIEAGARIGRGARLGPGC FT VIGAGSTVGADSLLHPRVTLYAGVHVGERAIIHSGAVLGADGFGFAPDPTLGRGAWGKI FT PQLGEVRVGNDVEIGANTTIDRGALDDTIVGDGVKLDNQIMVAHNVRIGAHTAIAACVG FT IAGSTTIGERCTIGGASMLSGHLAIADDVNISGGTAVTSNIAKAGRYTGVYPYAEHSEW FT QRNAAVIQQLALLRRRLRALERE" FT misc_feature 1505269..1505322 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1505323..1505376 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1505332..1505418 FT /note="ScanRegExp hit to PS00101, Hexapeptide-repeat FT containing-transferases signature." FT misc_feature 1505377..1505430 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1505431..1505484 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1505554..1505607 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1505620..1505673 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1505629..1505715 FT /note="ScanRegExp hit to PS00101, Hexapeptide-repeat FT containing-transferases signature." FT misc_feature 1505674..1505727 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1505728..1505781 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT CDS 1506039..1506494 FT /transl_table=11 FT /gene="fabZ" FT /gene_synonym="sefA" FT /locus_tag="BP1430" FT /product="(3R)-hydroxymyristol-[acyl carrier protein] FT dehydratase" FT /EC_number="4.2.1.-" FT /note="Similar to Escherichia coli FT (3R)-hydroxymyristol-[acyl carrier protein] dehydratase FT FabZ or SefA or B0180 or z0192 or ecs0182 SW:FABZ_ECOLI FT (P21774) (151 aa) fasta scores: E(): 7.5e-27, 53.37% id in FT 148 aa, and to Aquifex aeolicus FabZ or Aq_056 FT SW:FABZ_AQUAE (O66468) (150 aa) fasta scores: E(): 8.3e-26, FT 51% id in 149 aa" FT /protein_id="CAE41720.1" FT /translation="MELDIKGIMDRLPHRYPMLLIDRVLEMVPGKSIVAIKNVSINEPF FT FTGHFPHHPVMPGVLIVEAMAQASALFSFTDENGGLKCDGAKTAYYLVGIDGARFRKPV FT VPGDQLRLEVEAERLSRTICKYQGRALVDGQLVAEAKLMCAIRSLEE" FT misc_feature 1506045..1506455 FT /note="HMMPfam hit to PF01377, Thioester dehydrase" FT CDS 1506495..1507289 FT /transl_table=11 FT /gene="lpxA" FT /locus_tag="BP1431" FT /product="acyl-[acyl-carrier-protein]--UDP-N-acetylglucos FT amine O-acyltransferase" FT /EC_number="2.3.1.129" FT /note="Similar to Escherichia coli FT acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine FT O-acyltransferase LpxA or B0181 SW:LPXA_ECOLI (P10440) (262 FT aa) fasta scores: E(): 1.4e-51, 53.81% id in 262 aa, and to FT Neisseria meningitidis FT acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine FT O-acyltransferase LpxA or Nma0090 SW:LPXA_NEIMA (Q9JX26) FT (258 aa) fasta scores: E(): 8.8e-53, 52.87% id in 261 aa" FT /protein_id="CAE41721.1" FT /translation="MSGNIHPTAVVDPAAQIDSSVVIGPYSVVGPGVSIAAGTEVGAHC FT VLDGVTSIGRDNRFYRFCSIGGMPQDKKYSGEPTRLVIGDRNTVREFTTFNTGTVQDGG FT VTSIGDDNWIMAYVHIAHDCHIGNNTILANSVQLGGHVQVGDWAIVGGLTGVHQFAKIG FT AHSMTGGNSSLMQDAPPFVLAAGNPCRPVGVNVEGLKRRGFSAAAISALRDAYKSIYRR FT GLSLDEGRAELRARQQAEPDVAEHLQTMLDFLDASTRGIIRP" FT misc_feature 1506534..1506587 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1506588..1506641 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1506642..1506695 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1506807..1506860 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1506861..1506914 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1506915..1506968 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 1506969..1507022 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT CDS 1507286..1508467 FT /transl_table=11 FT /gene="lpxB" FT /gene_synonym="pgsB" FT /locus_tag="BP1432" FT /product="lipid-A-disaccharide synthase" FT /EC_number="2.4.1.182" FT /note="Similar to Escherichia coli lipid-A-disaccharide FT synthase LpxB or PgsB or B0182 SW:LPXB_ECOLI (P10441) (382 FT aa) fasta scores: E(): 3.4e-46, 40.76% id in 390 aa, and to FT Pseudomonas aeruginosa lipid-A-disaccharide synthase LpxB FT or Pa3643 SW:LPXB_PSEAE (Q9HXY8) (378 aa) fasta scores: FT E(): 1.3e-52, 45.75% id in 389 aa" FT /protein_id="CAE41722.1" FT /translation="MSLRIGMVAGEPSGDLLAGRIIAGLQARAPGVHCAGIGGPQMAAR FT GFEAWHPMHALTVFGYIDAFKRIPSLLSTYGDVKRRLLAEPPSVFVGIDAPDFNLRLEH FT QLRQAGTPTVHFVGPSIWAWRYERINKIRAAVSHMLVLFPFEEALYRKEGIPVTYVGHP FT LAGVIPMQPDRAAARARLGIDADARVLAILPGSRSSEIRLLAPRFLQAAAELVRRDPRL FT QCVVPMVNPQRRAEFEAIATQHPVPGLRCVTAAEGQGETPVAWSVMEASNAVLVASGTA FT TLETALYKRPMVISYVLSPWMRRIMAWKSGQQRPYLPWVGLPNVLLRDFAVPELLQDEA FT TPAALAEATWQALTDEAGAARIEARFTALHQDLLRDTPALAAQAILEVADGAA" FT misc_feature 1507298..1508440 FT /note="HMMPfam hit to PF02684, Lipid-A-disaccharide FT synthetase" FT CDS 1508454..1509059 FT /transl_table=11 FT /gene="rnhB" FT /locus_tag="BP1433" FT /product="ribonuclease HII" FT /EC_number="3.1.26.4" FT /note="Similar to Escherichia coli ribonuclease HII RnhB or FT B0183 SW:RNH2_ECOLI (P10442) (198 aa) fasta scores: E(): FT 2.2e-37, 58.91% id in 185 aa, and to Pseudomonas aeruginosa FT ribonuclease HII RnhB or Pa3642 TR:Q9HXY9 (EMBL:AE004784) FT (201 aa) fasta scores: E(): 3.5e-37, 59.66% id in 181 aa" FT /protein_id="CAE41723.1" FT /translation="MEQPDLFGTLAPLPAIIAGVDEAGRGPLAGAVYAAAVILDPDRPV FT DGLADSKVLKAEQREALAVQIRAQALAWFVASASVQEIDSLNILRATMLAMQRAVAGLA FT MAPELAMVDGNQAPKLRCAVQTVIKGDALVPAISAASILAKTARDADLLRLHALYPQYG FT FDQHKGYGTPQHLSLLREHGPCPEHRRSFAPIKAYGAP" FT misc_feature 1508505..1509038 FT /note="HMMPfam hit to PF01351, Ribonuclease HII" FT CDS 1509056..1509829 FT /transl_table=11 FT /locus_tag="BP1434" FT /product="putative RNA methyltransferase" FT /note="Similar to Neisseria meningitidis putative RNA FT methyltransferase Nma1351 TR:Q9JUE8 (EMBL:AL162755) (261 FT aa) fasta scores: E(): 7.7e-33, 42.91% id in 261 aa, and to FT Synechocystis sp hypothetical tRNA/rRNA methyltransferase FT Slr1673 SW:YG73_SYNY3 (P74261) (274 aa) fasta scores: E(): FT 5.4e-18, 32.95% id in 264 aa" FT /protein_id="CAE41724.1" FT /translation="MKHLSSRDNPAVKALHKLAAGGGRRDGRILLDGVHLCQAWLAHQG FT TPLQALFDVARLDHPEIRALAGQVPPQHCLALDSRLLQGLASVESGQGVVFVARAPEPA FT LPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHF FT ALHIHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPARCAWVFGHEGQGVAEALLRA FT AALRVHIPHESAAVESLNVGAAAAICLFEQRRQRR" FT misc_feature 1509386..1509805 FT /note="HMMPfam hit to PF00588, SpoU rRNA Methylase family" FT CDS complement(1509841..1510668) FT /transl_table=11 FT /locus_tag="BP1435" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1769 TR:Q9I2X0 (EMBL:AE004602) (274 aa) fasta FT scores: E(): 1.2e-51, 49.44% id in 269 aa, and to Neisseria FT meningitidis hypothetical protein Nmb0619 TR:Q9K0I1 FT (EMBL:AE002417) (273 aa) fasta scores: E(): 1.2e-48, 48.16% FT id in 272 aa" FT /protein_id="CAE41725.1" FT /translation="MTSTPIERAVYIVSDSTGITAETFSHSVLSQFDEVNFKPVRLPFI FT DTLDKAREVVARINRNALEAGVPPIVFSTLVNPEILALVRQSNGVFLDLFGTFVSHIEQ FT ALGLKSSHSIGRSHMAANSEKYRNRIDAINFSLAHDDGQFVNQLDQADVILLGVSRCGK FT TPTSLYLAMQYAVKAANFPLTPDDFERGALPKTIAPYRGKLFGLSIQPERLAEVRNERR FT PNSHYARLEQCRYEVAEAERMMRREGISWLSTTTKSIEEIATTVLQEVGLERV" FT misc_feature complement(1510177..1510200) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 1510830..1513193 FT /transl_table=11 FT /gene="ppsA" FT /gene_synonym="pps" FT /locus_tag="BP1436" FT /product="phosphoenolpyruvate synthase" FT /EC_number="2.7.9.2" FT /note="Similar to Escherichia coli phosphoenolpyruvate FT synthase PpsA or Pps or B1702 SW:PPSA_ECOLI (P23538) (791 FT aa) fasta scores: E(): 8.5e-201, 65.34% id in 785 aa, and FT to Neisseria meningitidis phosphoenolpyruvate synthase FT Nmb0618 TR:Q9K0I2 (EMBL:AE002417) (794 aa) fasta scores: FT E(): 1.6e-209, 67.89% id in 788 aa" FT /protein_id="CAE41726.1" FT /translation="MSYVVSFEQLRMTDVDSVGGKNASLGEMISQLAGAGVRVPGGFAT FT TAQAFRDFLQASGLDKRIADRLATLNPEDVRELASAGAEIRQWVIDAPFSPEFEQAIRT FT AFAELDADGKGSFAVRSSATAEDLPDASFAGQQETFLNVVGVDDVLDKIRHVFASLYND FT RAISYRVHKGYAHAEVALSAGIQRMVRSDKGSAGVMFTIDTESGFQDVVFITSSYGLGE FT TVVQGAVNPDEFYVFKPSLERGNYPIVSRRIGSKLIKMEFDPERPEGRAVRTVDVPVSE FT RNRYSLTDDEVIELARYAVIIEKHYQRPMDIEWGRDGVDGKIYILQARPETVKSQQGVN FT DVQQRYRLKATGQVLVTGRAIGQKIGAGKVRVVADISEMDKVQAGDVLVTDMTDPNWEP FT VMKRASAIITNRGGRTCHAAIIARELGIPAVVGCGDATDLLKDGQAVTASCAEGDEGRI FT YDGLIETEVEEVRRGEMPPIDVKIMMNVGNPQLAFDFAQIPNAGVGLARLEFIINNNIG FT IHPKAVLDYPNVDGELKKAVESAARGHASPRAFFVEKLAEGVATIGAAFWPKPVIVRMS FT DFKSNEYRKLVGGSRYEPEEENPMLGLRGASRYIAADFEECFRMECEALKKVRDEMGLT FT NVEIMVPFVRTLGQARKVVELLAAHGLARGENGLKLIMMCEVPSNAILAEQFLEYFDGF FT SIGSNDMTQLTLGLDRDSGMELLAADFDERDDAVKFMLRRAIKACLAANKYVGICGQGP FT SDHPDFAQWLKDEGILSMSLNPDTVVETWQQLAK" FT misc_feature 1510833..1511915 FT /note="HMMPfam hit to PF01326, Pyruvate phosphate dikinase, FT PEP/pyruvate binding domain" FT misc_feature 1511988..1513082 FT /note="HMMPfam hit to PF00391, PEP-utilizing enzyme, mobile FT domain" FT misc_feature 1512063..1512098 FT /note="ScanRegExp hit to PS00370, PEP-utilizing enzymes FT phosphorylation site signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 1512903..1512959 FT /note="ScanRegExp hit to PS00742, PEP-utilizing enzymes FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(1513261..1513980) FT /transl_table=11 FT /locus_tag="BP1437" FT /product="probable class-I glutamine amidotransferase" FT /note="Similar to Xylella fastidiosa GMP synthase xf0560 FT TR:Q9PFU7 (EMBL:AE003903) (240 aa) fasta scores: E(): FT 7.8e-30, 46.15% id in 234 aa, and to Caulobacter crescentus FT glutamine amidotransferase, class-i family protein cc0409 FT TR:Q9AB25 (EMBL:AE005713) (238 aa) fasta scores: E(): FT 1.3e-14, 33.88% id in 242 aa" FT /protein_id="CAE41727.1" FT /translation="MTAALPVLILHTGNPAAALRAAHGSYAEMLRQAAGLDAAGTHVVA FT SYKDEAPRAPGAYRAALITGSPAMVTDRAPWSEAAADWLRQAAGAGLPMFGICYGHQLL FT AHALGGVVGDNPAGRELGTLPVELLPAAATDPLLAGLPAAFDAQMMHEQAVLAAPPGAT FT VLARSAQDAHQILRLAPRIYTAQFHPEFTPGFVAAHLRHHAALYAAHGLDVEGLARAAG FT PTPLAASLVRRFLACCA" FT misc_feature complement(1513363..1513929) FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I" FT misc_feature complement(1513669..1513704) FT /note="ScanRegExp hit to PS00442, Glutamine FT amidotransferases class-I active site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 1514104..1514529 FT /transl_table=11 FT /locus_tag="BP1438" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis putative membrane FT protein Nma1383 TR:Q9JUC5 (EMBL:AL162755) (135 aa) fasta FT scores: E(): 4e-06, 29.92% id in 137 aa, and to FT Mycobacterium tuberculosis hypothetical 15.2 kDa protein FT Cy277.08 precursor Rv1487 or Mtcy277.08 TR:P71767 FT (EMBL:Z79701) (144 aa) fasta scores: E(): 0.012, 30.07% id FT in 143 aa" FT /protein_id="CAE41728.1" FT /translation="MWIWFGLAAVALIGEVGSGTFYLLLVALGLAAGGIAAWLGADLAW FT QLVACGLVALLGLLALRRTGVLKKREVNAARNADVNLDIGQSVMVDAWSDAGTTQVYYR FT GAQWQAELAHGQPRQAGRHIIAEIRGTRLVLAPAPAA" FT misc_feature 1514104..1514196 FT /note="Signal peptide predicted for BP1438 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.622) with cleavage site FT probability 0.235 between residues 31 and 32" FT misc_feature join(1514122..1514190,1514233..1514286) FT /note="2 probable transmembrane helices predicted for FT BP1438 by TMHMM2.0 at aa 7-29 and 44-61" FT CDS complement(1514564..1515514) FT /transl_table=11 FT /locus_tag="BP1439" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41729.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 1514564..1514595 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1514564..1515616) FT misc_feature complement(1514600..1515133) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1515191..1515256) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1515585..1515616) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 1515632..1516558 FT /transl_table=11 FT /locus_tag="BP1440" FT /product="putative membrane protein" FT /note="Similar to Rickettsia conorii hypothetical 34.0 kDa FT protein Rc0452 TR:AAL02990 (EMBL:AE008609) (312 aa) fasta FT scores: E(): 2.1e-55, 53.33% id in 300 aa, and to Neisseria FT meningitidis membrane protein Gna1220 TR:Q9JPN3 FT (EMBL:AF226519) (315 aa) fasta scores: E(): 3.4e-53, 64.83% FT id in 310 aa" FT /protein_id="CAE41730.1" FT /translation="MIDVSTVVLIVIVILALMIVVKAIAIVPQQHAWVVERLGKFDRVL FT SPGAGFVIPFIERVSYKHSLKEIPLDVPSQVCITRDNTQLQVDGVLYFQVTDPMRASYG FT SSNYISAITQLAQTTLRSVIGKLELDRTFEEREFINSTIVASLDEAALNWGVKVLRYEI FT KDLTPPNEILRAMQAQITAEREKRALIAASEGRRQEQINIATGEREAAIARSEGEKQAQ FT INQAQGEAAAVLAIAEATAKAIEQVGEAVRQPGGMEAVNLKVAERYVDAFSNVAKEGNT FT LILPSNLSDVGGLIASAMTIVKSTKSA" FT misc_feature 1515632..1515706 FT /note="Signal peptide predicted for BP1440 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.709) with cleavage site FT probability 0.611 between residues 25 and 26" FT misc_feature 1515650..1515718 FT /note="1 probable transmembrane helix predicted for BP1440 FT by TMHMM2.0 at aa 7-29" FT misc_feature 1515656..1516228 FT /note="HMMPfam hit to PF01145, SPFH domain / Band 7 family" FT CDS 1516624..1517781 FT /transl_table=11 FT /locus_tag="BP1441" FT /product="probable membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical FT transmembrane protein Smc01464 TR:CAC46726 (EMBL:AL591789) FT (426 aa) fasta scores: E(): 4.8e-25, 33.42% id in 377 aa, FT and to Rhizobium loti Mll4270 protein TR:Q98EF3 FT (EMBL:AP003003) (403 aa) fasta scores: E(): 1.3e-19, 29.72% FT id in 397 aa" FT /protein_id="CAE41731.1" FT /translation="MLAPVTLLVISTLSSLVTQGVLGSLLRSGIAGIRELMWANVLVLC FT SLLLFTLQANPAMPPWLAIQAPNVLISSGVVLFCAGVFRFMQQRPPWRLLLLGLALSIG FT ANIWFHYVDPSVNARVVTASGLHALLWGGSAWTIYRNMPLRRSRYSYWFAGVTATVAAL FT GHALRTAVYGLQIEQTQGLLQSSVWNVAFLAIGVLVMPSMTLGMIMMIHDRMLAERERE FT ANQDFLTGLLSRKAWWREGERLCARALRTGRPLTLLALDIDRFKQVNDQHGHAAGDVVL FT RHFGSLATALLRSGDVIGRLGGEEFVALLPDTDGDTGVSVAERLLASVRATPCSHGGKA FT LTYTFSGGVAQYRAGDTLPVLVERADAALYAAKQAGRDRIRNRAG" FT misc_feature 1516624..1516683 FT /note="Signal peptide predicted for BP1441 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.775) with cleavage site FT probability 0.352 between residues 20 and 21" FT misc_feature join(1516633..1516701,1516735..1516794,1516804..1516872, FT 1516891..1516959,1516969..1517037,1517071..1517139, FT 1517182..1517250) FT /note="7 probable transmembrane helices predicted for FT BP1441 by TMHMM2.0 at aa 4-26, 38-57, 61-83, 90-112, FT 116-138, 150-172 and 187-209" FT misc_feature 1517269..1517760 FT /note="HMMPfam hit to PF00990, GGDEF domain" FT CDS complement(1517762..1518229) FT /transl_table=11 FT /gene="smpB" FT /gene_synonym="smqB" FT /locus_tag="BP1442" FT /product="SsrA-binding protein" FT /note="Similar to Escherichia coli ssrA-binding protein FT SmpB or SmqB or B2620 or Z3913 or Ecs3482 SW:SSRP_ECOLI FT (P32052) (159 aa) fasta scores: E(): 2e-26, 45.94% id in FT 148 aa, and to Neisseria meningitidis SsrA-binding protein FT SmpB or Nma1726 or Nmb1526 SW:SSRP_NEIMA (Q51111) (148 aa) FT fasta scores: E(): 2.3e-35, 61.64% id in 146 aa" FT /protein_id="CAE41732.1" FT /translation="MSIIDNRKATHDYFIEDRYEAGMVLEGWEVKAIRDGRVQLKESYV FT IVRDGEIYLLGMHVSPLPTASTHIRPDATRTRKLLLKAEEIRKLIGKVEQRGYTLVPLN FT LHYKNGRIKLDFALGRGKKLYDKRDTAREKDWQREKERVLKHDTRVNQRDS" FT misc_feature complement(1518023..1518229) FT /note="HMMPfam hit to PF01668, SmpB protein" FT misc_feature complement(1518131..1518169) FT /note="ScanRegExp hit to PS01317, SSRA-binding protein. FT Confirmed by InterPro eMOTIF pattern match." FT CDS 1518295..1518729 FT /transl_table=11 FT /locus_tag="BP1443" FT /product="conserved hypothetical protein" FT /note="Similar to Vibrio cholerae hypothetical protein FT Vc0849 SW:Y849_VIBCH (P52122) (144 aa) fasta scores: E(): FT 2.9e-24, 46.52% id in 144 aa, and to Escherichia coli FT hypothetical protein YfjG or B2619 SW:YFJG_ECOLI (P52121) FT (158 aa) fasta scores: E(): 1.1e-23, 42.25% id in 142 aa" FT /protein_id="CAE41733.1" FT /translation="MHKVQRSVLVPYSAAQMFDLVADVEKYPEFMPWCGGAEVHSRSEH FT GMQASILISFAGLKQRFSTRNTHDYPQRIDLELVDGPFSMLVGHWVFQPLAEDACKVLF FT TLEYAFSNRALEMVVGPVFNRIAASFIDSFTKRAQAKYGE" FT CDS 1518758..1519069 FT /transl_table=11 FT /locus_tag="BP1444" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli protein YfjF or B2618 FT SW:YFJF_ECOLI (P52119) (96 aa) fasta scores: E(): 9.8e-07, FT 43.52% id in 85 aa, and to Neisseria meningitidis FT hypothetical protein nma1005 or nmb0796 SW:YA05_NEIMA FT (Q9JRC2) (92 aa) fasta scores: E(): 6.1e-07, 36.78% id in FT 87 aa" FT /protein_id="CAE41734.1" FT /translation="MTVCHACPDGAWQRAVTLPAGATVADAVAASGFAAAHRGQDPWAH FT GVGVFGKAQAADAPLADGDRVEIYRGLSFDPKESRRRRAEHRRALAARGGKARPAGLL" FT CDS 1519266..1520420 FT /transl_table=11 FT /locus_tag="BP1445" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable acyl-CoA FT dehydrogenase Pa0746 TR:Q9I5I3 (EMBL:AE004509) (387 aa) FT fasta scores: E(): 2.8e-92, 62.36% id in 380 aa, and to FT Caulobacter crescentus acyl-CoA dehydrogenase Cc1350 FT TR:Q9A8K3 (EMBL:AE005810) (379 aa) fasta scores: E(): FT 5.4e-85, 56.99% id in 379 aa" FT /protein_id="CAE41735.1" FT /translation="MDFELTDEQRAFAQAARDYAQGELAPHAARWDAEGIFPREAFARA FT GELGFCAIYASEEIGGLGLPRLDATLVFEEMAAVDPSTTAFLTIHNMATWMVGQWARPA FT VREQWGPLLASGEKLASYCLTEPNAGSDAGSLATRAERQGDDYVLNGAKAFISGGGDTD FT LLVVMARTGGDGPGGVSAFAVPADAAGIAYGRKEEKMGWNSQSTRPITFEQVRVPASHM FT LGEPGEGFKIAMKGLDGGRINIGTCSVGAAQGAMDAARRYMDERRQFNRKLAQFQALQF FT KLADMATHLVAARQMVRLAACKLDAGSADASTYCAMAKRFATDMGFQICLDAQQIHGGY FT GYLRDYPLERLVRDTRVHQILEGTNEIMRVIVARQLLEKGADIR" FT misc_feature 1519278..1520387 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 1519632..1519670 FT /note="ScanRegExp hit to PS00072, Acyl-CoA dehydrogenases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 1520268..1520327 FT /note="ScanRegExp hit to PS00073, Acyl-CoA dehydrogenases FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 1520417..1521589 FT /transl_table=11 FT /locus_tag="BP1446" FT /product="enoly-CoA hydratase" FT /note="Similar to Pseudomonas putida enoyl-coenzyme A FT hydratase TR:Q51969 (EMBL:U24215) (355 aa) fasta scores: FT E(): 1.9e-29, 38.66% id in 375 aa, and to Pseudomonas FT aeruginosa probable enoyl-CoA hydratase/isomerase Pa0744 FT TR:Q9I5I5 (EMBL:AE004509) (367 aa) fasta scores: E(): FT 1.5e-41, 46.47% id in 383 aa" FT /protein_id="CAE41736.1" FT /translation="MNAPVLFEERIADNGVRLGVATLNAPQTLNGLSLEMVELLDARLR FT AWAADAAVAMVILQGAGEKAFCAGGDLHGLYRSMRENTGGDPWANTHARRFFEHEYRLD FT YLIHTYPKPVLCWGHGIVMGGGVGLMMGASHRVVSETTRMAMPEITIGLFPDVGGSWLL FT NRMPGRTGLFLALTGAHVNASDAFFAGLADFRLDSAQWPDFCASLLSLPWAGQPGGPGT FT GNAAPRSINDGLLRQALLAHEPATQLEPGPLRQHSFLVNSLCSGKRLDDIYAEIAELKD FT HADPWLARAAATMLAGSPGSARLAYALQQHTRLRSLADVFRIEYVAALACAAHGDFAEG FT IRALLVDKDRQPRWNPATLSEASDDWVRKFFDEPWPAGQPHPLADLGHGA" FT misc_feature 1520471..1521007 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS 1521637..1522530 FT /transl_table=11 FT /gene="mmsB" FT /locus_tag="BP1447" FT /product="3-hydroxyisobutyrate dehydrogenase" FT /EC_number="1.1.1.31" FT /note="Similar to Pseudomonas aeruginosa FT 3-hydroxyisobutyrate dehydrogenase MmsB or Pa3569 FT SW:MMSB_PSEAE (P28811) (298 aa) fasta scores: E(): 4.2e-66, FT 67% id in 294 aa, and to Rhizobium loti FT 3-hydroxyisobutyrate dehydrogenase Mlr1203 TR:Q98L30 FT (EMBL:AP002996) (294 aa) fasta scores: E(): 3.1e-44, 50.69% FT id in 290 aa" FT /protein_id="CAE41737.1" FT /translation="MSSIAFIGLGNMGAPMALNLVKAGHDLTVFDLVPAAVKTLTDAGA FT RAAGSAAEAVQGAELVISMLPASKHVEGLYLGQDLLASIGASALVIECSTIAPDSARKV FT AAAAQARGIAMIDAPVSGGTGGAAAGTLTFIVGGEAPALERARPVLASMGKNIFHAGGA FT GAGQVAKICNNMLLGILMAGTSEALALGVANGLDPKVLSDIISKSSGRNWATELYNPWP FT GVMEHAPASKGYAGGFGVDLMLKDLGLAAEAALGTRSSIPLGELARNLYSLHSQGGSGG FT LDFSSIVNLYSPGERN" FT misc_feature 1521652..1521693 FT /note="ScanRegExp hit to PS00895, 3-hydroxyisobutyrate FT dehydrogenase signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 1522576..1523013 FT /transl_table=11 FT /locus_tag="BP1448" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr6946 protein TR:Q987R7 FT (EMBL:AP003010) (171 aa) fasta scores: E(): 5.5e-18, 48.85% FT id in 131 aa, and to Agrobacterium tumefaciens Agr_c_483p FT TR:AAK86098 (EMBL:AE007967) (149 aa) fasta scores: E(): FT 7.3e-14, 39.09% id in 133 aa" FT /protein_id="CAE41738.1" FT /translation="MPDTEAFEAARQRVHDNFARQSVMALIGARLGAVEPGEVEIALPY FT RADLCQQNGFLHAGISTTIADSAGGYAAYTLFGPGEDVLTSEFKMNFLAPADGEHFVAS FT GKVLKPGRRLSICQVELRACRGERSTLCLVGLMTAVRVTPR" FT misc_feature 1522624..1523001 FT /note="HMMPfam hit to PF02584, Uncharacterized protein FT PaaI, COG2050" FT CDS 1523073..1523762 FT /transl_table=11 FT /locus_tag="BP1449" FT /product="putative membrane protein" FT /note="Similar to Caulobacter crescentus nodulin-related FT protein Cc0717 TR:Q9AA89 (EMBL:AE005747) (233 aa) fasta FT scores: E(): 8.4e-38, 60.71% id in 224 aa, and to Rhizobium FT loti Mlr6622 protein TR:Q988S0 (EMBL:AP003009) (231 aa) FT fasta scores: E(): 3.8e-37, 60.26% id in 224 aa" FT /protein_id="CAE41739.1" FT /translation="MPARSHHRIFRSGWLRAAVLGANDGIVSTASLIAGVAAAQASYAA FT ILTSGLAGLVAGALSMAAGEYVSVKSQADIEAADLRLEQSSLKRNSREELEELTGIYVE FT RGLSPDLAGQVARQLTRHNALDAHARDELGISVHNRAQPVQAALASAASFAVGAALPLA FT IAMAAPLAQLMPVVIAGSVAGLGILGAVAARAGGAPVGPAAVRVVLLGAAAMALTAGVG FT ALFGVAV" FT misc_feature 1523073..1523204 FT /note="Signal peptide predicted for BP1449 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.925) with cleavage site FT probability 0.619 between residues 44 and 45" FT misc_feature join(1523109..1523177,1523205..1523273,1523508..1523576, FT 1523589..1523648,1523685..1523753) FT /note="5 probable transmembrane helices predicted for FT BP1449 by TMHMM2.0 at aa 13-35, 45-67, 146-168, 173-192 and FT 205-227" FT CDS complement(1523772..1524722) FT /transl_table=11 FT /locus_tag="BP1450" FT /product="transposase" FT /note="transposase for IS481 element" FT /protein_id="CAE41740.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS" FT repeat_region 1523772..1523799 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(1523772..1524824) FT misc_feature complement(1523808..1524341) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(1524399..1524464) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(1524793..1524824) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(1524821..1525783) FT /transl_table=11 FT /gene="talB" FT /locus_tag="BP1451" FT /product="transaldolase B" FT /EC_number="2.2.1.2" FT /note="Similar to Escherichia coli transaldolase B TalB or FT B0008 or Z0008 or Ecs0008 SW:TALB_ECOLI (P30148) (316 aa) FT