ID BN001180; SV 1; linear; genomic DNA; STD; INV; 7686 BP. XX AC BN001180; XX DT 29-JUL-2008 (Rel. 96, Created) DT 03-NOV-2011 (Rel. 110, Last updated, Version 3) XX DE TPA: Hydra magnipapillata mitochondrial genome, chromosome 2 (containing DE functional COX1 sequence) XX KW Third Party Annotation; TPA; TPA:inferential. XX OS Hydra magnipapillata OC Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroida; Anthomedusae; Hydridae; OC Hydra. OG Mitochondrion XX RN [1] RP 1-7686 RA Voigt O.; RT ; RL Submitted (01-NOV-2007) to the INSDC. RL Voigt O., Department of Geobiology, University Goettingen, Goldschmidtstr. RL 3, D-37077 Goettingen, GERMANY. XX RN [2] RX DOI; 10.1186/1471-2164-9-350. RX PUBMED; 18655725. RA Voigt O., Erpenbeck D., Woerheide G.; RT "A fragmented metazoan organellar genome: the two mitochondrial chromosomes RT of Hydra magnipapillata"; RL BMC Genomics 9:350-350(2008). XX AH LOCAL_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP AS 1-500 TI919644918 258-758 c AS 501-1000 TI958958805 423-922 c AS 1001-1500 TI940959668 262-761 AS 1501-2000 TI932406983 124-623 AS 2001-2500 TI940971350 409-908 c AS 2501-3000 TI946071464 273-772 c AS 3001-3500 TI946073581 107-606 c AS 3501-4000 TI943303727 99-598 c AS 4001-4500 TI946070315 476-975 AS 4501-5000 TI987283275 174-673 AS 5001-5500 TI946071745 257-756 AS 5501-6000 TI939774911 32-531 c AS 6001-6500 TI929344415 406-905 AS 6501-7000 TI939775702 346-845 c AS 7001-7500 TI943306906 92-591 c AS 7501-7686 TI1241477256 56-241 XX FH Key Location/Qualifiers FH FT source 1..7686 FT /organism="Hydra magnipapillata" FT /organelle="mitochondrion" FT /chromosome="2" FT /mol_type="genomic DNA" FT /db_xref="taxon:6085" FT repeat_region 1..191 FT /rpt_type=INVERTED FT /rpt_type=TERMINAL FT /note="includes 54bp copy of 3' end of COX1" FT CDS complement(138..>191) FT /pseudo FT /transl_table=4 FT /gene="COX1" FT /note="non-functional copy of 3' end of COX1" FT /db_xref="PSEUDO:CAP49320.1" FT tRNA 232..302 FT /product="tRNA-Met (CAU)" FT /note="trnM" FT rRNA 307..1207 FT /product="small subunit ribosomal RNA" FT /note="su-rRNA" FT CDS 1208..1765 FT /codon_start=1 FT /transl_table=4 FT /gene="ND6" FT /product="NADH dehydrogenase subunit 6" FT /db_xref="GOA:B4F7M8" FT /db_xref="InterPro:IPR001457" FT /db_xref="UniProtKB/TrEMBL:B4F7M8" FT /protein_id="CAP49321.1" FT /translation="MNEFFFFFSILIILGCLMCINSLNPIHSVFWLVTVFFFSFALLIN FT LNLEFLSLLLIIIYVGAIVILFLFVIMMLDIIQIKKNSNINNIIPIILIILSLLTIKII FT NKDIFLSYHLNNDFLNFNLINHYNFHNLALFFYSKYSINFILISIILSIGMIGVIVLTI FT TYNSNSKKQKIFIQHLRNNSWN" FT CDS 1756..2103 FT /codon_start=1 FT /transl_table=4 FT /gene="ND3" FT /product="NADH dehydrogenase subunit 3" FT /db_xref="GOA:B4F7M9" FT /db_xref="InterPro:IPR000440" FT /db_xref="UniProtKB/TrEMBL:B4F7M9" FT /protein_id="CAP49322.1" FT /translation="MKLNLFIYLSISFILSFIVLFFSIFLSFKSPDKEKVSIYECGFNP FT FHSTGQPFSIRFFLISILFLVFDLEIIYLFPWSVNSNLIDYYSQFIIYLFIMILVIGLV FT YEWLRGGLEWE" FT CDS 2103..2402 FT /codon_start=1 FT /transl_table=4 FT /gene="ND4L" FT /product="NADH dehydrogenase subunit 4L" FT /db_xref="GOA:B4F7N0" FT /db_xref="InterPro:IPR001133" FT /db_xref="UniProtKB/TrEMBL:B4F7N0" FT /protein_id="CAP49323.1" FT /translation="MLFDFNLLVVIMFCISIIGIIINRSNIILILVSIEILLLSISMNF FT MLTSLTNFSLEGQIIAIYVITIAAIESAIGLSIIVAFYKIKGSISLKLLNLLKG" FT CDS 2402..3391 FT /codon_start=1 FT /transl_table=4 FT /gene="ND1" FT /product="NADH dehydrogenase subunit 1" FT /db_xref="GOA:B4F7N1" FT /db_xref="InterPro:IPR001694" FT /db_xref="InterPro:IPR018086" FT /db_xref="UniProtKB/TrEMBL:B4F7N1" FT /protein_id="CAP49324.1" FT /translation="MKNIYLIILEIVKFLTIVIPVLISVAYLTLAERKILGYSQNRKGP FT NVVGIYGLLQPLADGVKLFSKELIIPNHVNIFLYLFSPILALSLSLLIWIIIPLGINNL FT IFDFNLGIMFIFAISSINIYSILLSGWSSNSKYAFLGSLRAAAQMISYEVCISLIIFSC FT ILCAGTLNIYSLINSQSQSISYIFPLWPIAIMFFICLLAETNRAPFDLTEGESELVSGY FT NVEYSSMSFALFFLAEYSHIILSSAFFVILFLGNWSNYFFINNFIFFLKMILFIFLFIW FT VRTSFPRLRYDQLMSLLWKSYLPLSLSFIIITNSLLWAFWGLSNKWCI" FT CDS 3382..4836 FT /codon_start=1 FT /transl_table=4 FT /gene="ND4" FT /product="NADH dehydrogenase subunit 4" FT /db_xref="GOA:B4F7N2" FT /db_xref="InterPro:IPR001750" FT /db_xref="InterPro:IPR003918" FT /db_xref="InterPro:IPR010227" FT /db_xref="UniProtKB/TrEMBL:B4F7N2" FT /protein_id="CAP49325.1" FT /translation="MYIIFLLLIPFLSILNILFLKRNSSNIFNISLSWSLILLLYYIVF FT FVLNYRIFNFQFSIDFNWLLINSIFVNWNNFILSVDGISIFFIGLSILLIPICILISLR FT SIKYFKKEFNILLFISVILLIGVFSILDVLWFYILFESILIPVFIMIGIWGYREEKIKA FT AFYFFFYTLIGSLLMLISIFKLYSLIGTTNYENLLIIKIPYDIQFWLFIGFFIGLAVKI FT PMVPFHIWLPQAHVEAPIAGSILLAGILLKLGGYGLIRFCYPIFPSASQFYYPLIIIIS FT IIAIVYGALTTCRQIDIKRLIAYSSVSHMGLVTVGIFSHSIEGLTGSILMMIAHGLSSS FT GLFIITSIIYFRFHSRIIKYFRGLTITMPILSIITFILILANISFPLTLNFIAELFLII FT SAFKFSLFIILLILLGVFINLIYSLWVYNRIFFGSNSIHLKFSRDIVNFEFQSLLPLII FT FIIILGIYPNILINPITFSSYINISI" FT CDS 4836..5984 FT /codon_start=1 FT /transl_table=4 FT /gene="CYTB" FT /product="cytochrome b" FT /db_xref="GOA:B4F7N3" FT /db_xref="InterPro:IPR005797" FT /db_xref="InterPro:IPR005798" FT /db_xref="InterPro:IPR016174" FT /db_xref="InterPro:IPR016175" FT /db_xref="UniProtKB/TrEMBL:B4F7N3" FT /protein_id="CAP49326.1" FT /translation="MRIRKNNHLIKHINSTLIDLPSPSNINYLWNFGSLLGLCFAIQLV FT TGIFLAMHYCGDIILAFKSIVHICRDVNYGFLLKSIHANGASLFFICVYIHIGKSLYYG FT GYQKKPIWFSGIIIFIVMMITAFIGYVLPWGQMSFWGATVITNFLSAIPYIGDDIVQWI FT WGGFSVNNATLGRFFSLHYLFPFVLASLILIHIVLIHSVGSSNPLGINSNFDKVPFHWY FT FAIKDIYGFFILIFILLFIVFFYTNTLGDPENFINANSLVTPVHIMPEWYFLFAYAILR FT SIPNKLGGVLALILSIVILFIIPFLHTNKFFSLTFRPIGKLLYWVFIANFILLTWLGSK FT PIENPYILISIISSLFYFFYFLFIIPIIGKLENYLFFQKVSV" FT CDS 5977..7545 FT /codon_start=1 FT /transl_table=4 FT /gene="COX1" FT /product="cytochrome c oxidase subunit I" FT /db_xref="GOA:B4F7N4" FT /db_xref="InterPro:IPR000883" FT /db_xref="InterPro:IPR023615" FT /db_xref="InterPro:IPR023616" FT /db_xref="UniProtKB/TrEMBL:B4F7N4" FT /protein_id="CAP49327.1" FT /translation="MYNWITRWMFSTNHKDIGTLYIIFGAFSGMIGTALSMLIRIELST FT PGRVIGDDHLYNVIVTAHAFVMIFFLVMPVLIGGYGNWFVPIYIGAPDMAFPRLNNLSF FT WLLPPALILLLTSSLVEQGAGTGWTVYPPLSGPLAHSGGSVDLAIFSLHCAGFSSIAGA FT INFITTIFNMRTPGLTFDKLPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTTFF FT DPAGGGDPVLYQHLFWFFGHPEVYILIIPGFGIISQIIPIFSSKNQVFGYLGMIYAQLA FT IAFLGFIVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKIFSWLATMYGGKINLSTPM FT LWATGFIFLFTLGGLTGVILANGSLDILLHDTYYVVAHFHYVLSLGAVFAMFGGFYFWF FT GKISGFAINETFGKIHFWITFIGVNLTFFPQHFLGLAGMPRRYADFPDSLFTWNAISSL FT GSIISIIGVVWFIYVIFDAFYSEEKFISWNNLDVEKINTLEWSLNCPPSHHTFNELPFI FT NHSTH" FT repeat_region 7492..7686 FT /rpt_type=INVERTED FT /rpt_type=TERMINAL FT /note="including 54 bp of functional COX1 sequence" XX SQ Sequence 7686 BP; 2541 A; 883 C; 1044 G; 3218 T; 0 other; gggttggtgc ggcgcggggc cccctgcgat agccgcagca gggggtgcgc cagtgctgcg 60 cctggactgg gggggggggt gggtgatcct cttttaggag agaagaaaac cgaaaagttt 120 ttttgattcc cttgttttta atgggttgaa tggtttataa aaggtaattc attaaaagta 180 tgatgactag gaaaattttt aagaatttta attatttgat cttctaaaag aagaagagta 240 aactaatgga aagttatttg gctcatgacc agaatataag ggttcgattc ctttctcttt 300 atttttgaat aagagcaatt ttcttttgat tatggagaaa taaaagtatg agaatcgttt 360 atacatgtta gtggaagcaa ataaatgagt aaaatagggt aatacctgtt ttgtatcagg 420 ttaaaaattt taatatattt ttatcctaag acgcatagct taagccatgt ttttactgaa 480 acaaagaaaa attaacagca gtaaagaaat ttatacaatt aaagtaattt agatataaag 540 taatcgtaaa ttttgtctaa ttaagtgcca gcagacgcgg tgatacttaa gaaataaatt 600 tttataaaaa aataggttaa atgtgtatag aattaagatt gtaaaattaa gattattgat 660 ttggtaaaat atacaataat taaaaatttt aaaaatttta cgaaataact agaaacttga 720 ataaatgata attaaacagg attagatacc ctggtaattt ttttgttaat aattaatctg 780 aacagtatac ctaaacaggt gaaaatcaaa tattttggtt gtttattttt ctaattagag 840 aagtatgtaa tttaattcga taatccgcga aataccttac cttttcttga aaatacaagt 900 gttgcatggt tgtcttcagc tttaacttat agttaaagca taattcttaa aagaataaag 960 tcaaatatta tggcctttat gaaaagggat attatgtact acaataaata ttataatata 1020 aatttatatt tggataatca atgtaaactg atttaaaaga gaatttaata gtaattaaaa 1080 atataaggtt ttaatgaata agtgcaaata ttaatacaaa tagcccgtcg ccttgatcat 1140 aaaagataga gtaagtcgta acatagtggg ggaaagggaa cttttccctg tgatttataa 1200 tccaatcatg aatgaatttt tctttttttt ttctattttg ataattttag ggtgtttaat 1260 gtgtattaat tctttaaacc ccattcattc tgttttttga ttagtaactg tatttttttt 1320 ttccttcgct ttattaatta atttaaactt ggaatttttg tcattattat taataataat 1380 atatgtaggg gctatagtaa tattattttt gtttgtaata atgatgttag atataattca 1440 aataaaaaaa aattctaata taaacaatat aatccctata attttaatta ttctaagttt 1500 actaacaata aaaattatta ataaagatat atttctttct tatcatttaa ataatgattt 1560 tttaaatttt aatttaataa atcattacaa ttttcataat ctagctttat ttttttattc 1620 taaatattct ataaatttta tattaattag tattatttta tccataggca tgataggagt 1680 aattgttcta acaattactt ataattctaa ttcaaaaaaa caaaaaatat ttattcaaca 1740 tttaagaaat aattcatgaa attaaatttg tttatttatt tatccataag ttttattctt 1800 agttttatag ttttattttt ttcaattttt ctttctttta aatcaccaga taaagaaaag 1860 gtttctatct atgaatgtgg ttttaatcct tttcattcga ctggtcaacc attttctata 1920 agattttttt taatttctat tttattttta gtatttgatt tagaaataat ttatttattt 1980 ccatgatcag taaattcaaa cttaatagat tattattcac aatttattat atatttattt 2040 ataatgatat tagttatagg attagtttat gaatgattaa gagggggttt agaatgagaa 2100 taatgttatt tgactttaat ttattagtag taattatgtt ttgtattagt attataggta 2160 taatcataaa tagaagtaat ataatattaa ttttagttag tatagaaatt ttattactat 2220 caatttcaat gaactttatg ttaacctcat tgactaattt ttctttagag ggacaaataa 2280 tagcaatata tgtaataact atagctgcta ttgaatcagc tattggatta tcaataatag 2340 tagcttttta taaaataaaa ggatctattt ctttaaaatt attaaattta ttaaaaggat 2400 aatgaaaaat atatatttaa ttatcttaga aattgtaaag tttttaacaa ttgttattcc 2460 agttttaatc tctgtagctt atttaacttt agcagaaaga aaaattttag gctatagtca 2520 aaatagaaaa ggccctaacg tagtaggaat atatggatta ttacaacctt tagctgatgg 2580 tgtaaaatta ttttcaaaag aattaattat ccctaatcat gtaaatattt ttctttattt 2640 attttctcct atattagctt taagcttatc attacttatt tgaataatta tcccattagg 2700 aattaataat ttaatttttg attttaattt gggaattatg tttatctttg ctatttcttc 2760 tataaacata tattctattc ttttatctgg atgatcaagt aattccaaat atgctttttt 2820 aggttcatta agagctgctg ctcaaatgat aagttatgaa gtttgtatta gtttaattat 2880 tttttcttgt attttatgtg ctggaactct aaatatttat tctttaataa actcacaaag 2940 tcagagtatt tcttatattt ttcctttatg acctatagct ataatgtttt ttatatgttt 3000 attagcagag actaacagag ctccatttga tttaactgag ggagaatcag aattagtttc 3060 tggttataat gtagaatatt cttcaatgtc ttttgctcta ttctttttag cagaatattc 3120 tcatataata cttagtagcg ctttttttgt aattttattt ttaggaaact gaagtaatta 3180 tttttttatc aataatttta ttttcttttt aaaaatgatt ctgtttatat ttctatttat 3240 ttgagtaaga acttcttttc ctagattaag atatgatcaa ctaatgagtt tattatgaaa 3300 gtcttattta ccattaagtt tatcatttat tattataaca aattctttat tatgagcttt 3360 ttgaggttta tctaataaat gatgtatata atttttcttt tattaatccc atttttaagt 3420 atattaaata ttttatttct taaaagaaat agtagtaaca tctttaatat ttctttatct 3480 tgatctttaa tattattatt atattatata gtattttttg ttttaaacta tagaattttt 3540 aattttcaat ttagtataga ttttaattga ttgttaatta attcaatttt tgttaattga 3600 aataacttta ttctttctgt tgatggaata tctatatttt ttattggatt aagtatttta 3660 ttgattccta tatgtatatt gattagtttg agatcaataa agtattttaa aaaagaattt 3720 aatatattac tatttatatc agttatttta ttaatagggg tgttttctat tttagatgta 3780 ctatgatttt atattttatt cgaaagcata ttaataccag tttttattat gattggtata 3840 tgaggataca gagaagaaaa aattaaagct gctttttatt ttttctttta tactttaata 3900 ggatctttgt taatgttaat aagtatattt aagctatatt ctttaattgg aactactaat 3960 tatgaaaatt tattaattat aaaaatccca tatgatattc aattttgatt atttataggg 4020 tttttcatag gtttagctgt aaaaatacca atggtaccat ttcatatttg acttccacaa 4080 gctcatgtag aagcaccaat agcaggttca attttattag caggaatact tttaaaatta 4140 gggggatatg gattaataag attttgttat ccaatatttc cttcagcctc tcaattttat 4200 tatccattaa ttattataat aagtataata gccatagttt atggcgcttt gactacatgt 4260 cgtcaaatag atataaaacg tttaattgct tattcttcag tatctcatat gggtttagta 4320 actgtaggta ttttttcaca ttctattgaa ggattaacag gatcaatatt aatgatgatt 4380 gctcatggtt tatctagttc aggtttattt attataacct caattattta ttttagattt 4440 cattctagaa ttataaaata ttttagaggt ttgactatta ctatgcccat cttaagtata 4500 attacattta ttttgatttt agctaatatt tcatttccat taacattgaa ttttatagct 4560 gaattatttt tgataatttc agcttttaaa ttctccttat ttataatctt attaatctta 4620 ttaggtgttt ttataaattt aatatattct ttatgagttt ataatagaat attttttggt 4680 tcaaattcaa ttcatttaaa attttcaaga gatatagtaa atttcgaatt tcagagtcta 4740 ctgccattaa taatatttat tattatatta ggaatttatc ccaatatatt aattaatccc 4800 ataacattta gttcttatat taatatttct atataatgag aattagaaaa aataatcatc 4860 ttataaaaca cattaattct actttaatcg accttccttc cccatcaaat ataaattatt 4920 tatggaattt tggatcctta ttaggattat gttttgcaat tcaattagtt actggtattt 4980 ttttagctat gcactattgt ggagatataa ttttagcttt taaatcaata gttcatatat 5040 gtagagacgt aaattacgga tttctactaa aatcaattca cgctaatgga gcttctttgt 5100 tttttatctg tgtttatatt catataggta aaagtttata ttatgggggt tatcaaaaaa 5160 aacctatttg attctcgggt ataattatat ttatagtaat gatgattact gcttttatag 5220 gttatgtttt accttgggga caaatgtctt tttgaggagc tactgttatc acaaatttct 5280 tatctgcaat tccatatata ggggatgata tagttcaatg aatttgaggt ggatttagtg 5340 taaataatgc taccttaggt agatttttta gcctgcatta tttatttccg tttgtattag 5400 catcattaat tttaattcat atagtgttaa tacatagtgt cggatcaagc aatcctttag 5460 gaattaatag caactttgat aaagtcccat ttcattgata ttttgcaata aaagatatat 5520 atggattctt tatattaata tttattttat tatttatagt atttttttat actaatacct 5580 taggagaccc agaaaatttt attaatgcta attcattagt tacccccgtt catataatgc 5640 cagaatgata ttttttattt gcttacgcca tattaagatc tattcctaat aaattaggag 5700 gagttttagc tttaatttta agtatagtaa tattatttat tattccattt ttacatacta 5760 ataaattttt ttctttaacc tttagaccaa tagggaaatt attatattga gtgtttatag 5820 caaattttat tttattaact tggttaggtt ctaaacctat agaaaaccct tatatattaa 5880 ttagtataat ttctagctta ttttattttt tttacttttt atttattatt ccaattatag 5940 gaaaattaga aaattattta ttttttcaaa aagtaagtgt ataattgaat cacacgttga 6000 atgttttcaa ctaatcacaa agatatagga actttatata taatttttgg cgcattttct 6060 ggaatgatag gaactgcttt aagtatgtta attagaatag aactatcaac accagggaga 6120 gtaatagggg acgatcattt atataatgtt atagtcacag ctcatgcttt tgtaatgata 6180 ttttttttag ttatgccagt tttaatagga ggttatggga attgatttgt acctatatat 6240 ataggagccc cagatatggc ttttcctaga ttaaataatt tgagtttttg attacttcct 6300 ccagcattaa ttttactttt aacttcatcc ttagttgaac aaggagcagg aacaggttga 6360 actgtttacc ccccattatc tgggccttta gctcattcag gaggatctgt agatttagct 6420 atttttagtc ttcattgtgc tggattttct tccattgcag gagcaattaa ttttattaca 6480 actattttta atatgagaac accgggttta acatttgaca aacttccttt gtttgtgtga 6540 tcagtgttaa taacagcatt tttattactc ctttctttac ctgttttagc aggagcaata 6600 actatgctac taactgatag aaattttaat actacttttt ttgatccagc tggaggagga 6660 gaccctgttt tatatcaaca tttattttga ttttttggtc accctgaagt ttatatttta 6720 ataatcccag gatttggaat tatatctcaa atcataccta tatttagctc aaaaaatcaa 6780 gtttttggat acttaggtat gatatatgct caattggcta tagctttctt aggttttatt 6840 gtttgagctc atcatatgtt tactgtagga atggatgttg atactagagc ttattttaca 6900 gcagctacta tgattattgc tgtcccaaca ggaattaaaa tttttagttg attagcaaca 6960 atgtatggag gaaaaattaa tttatctaca cctatgttat gagctactgg ttttatattt 7020 ttattcactt taggtggatt aactggtgta attttagcta acggatcatt agatatttta 7080 ttacatgata catattatgt agtagctcat tttcattatg ttttatcatt aggtgcagta 7140 tttgctatgt ttggaggatt ttatttttga tttggaaaaa tttctggatt tgctatcaat 7200 gaaacttttg gtaaaattca tttttgaatt acctttatag gagtaaattt aacttttttc 7260 cctcaacatt tcttaggatt agcaggaatg cctagaagat atgcagactt tccagatagc 7320 ttatttactt gaaatgctat cagctcttta ggctctatta tttctataat aggagtagta 7380 tgattcattt atgtaatttt tgatgctttc tattcagaag aaaaatttat ttcttgaaat 7440 aacttagatg tagaaaaaat aaatacttta gaatgatcat taaattgtcc acctagtcat 7500 catactttta atgaattacc ttttataaac cattcaaccc attaaaaaca agggaatcaa 7560 aaaaactttt cggttttctt ctctcctaaa agaggatcac ccatcccccc cccccccagt 7620 ccaggcgcag cactggcgca ccccctgctg cggctatcgc agggggcccc gcgccgcacc 7680 aagccc 7686 //