ID BN001179; SV 1; linear; genomic DNA; STD; INV; 8194 BP. XX AC BN001179; XX DT 29-JUL-2008 (Rel. 96, Created) DT 03-NOV-2011 (Rel. 110, Last updated, Version 3) XX DE TPA: Hydra magnipapillata mitochondrial genome, chromosome 1 (containing DE non-functional partial COX1 sequences) XX KW Third Party Annotation; TPA; TPA:inferential. XX OS Hydra magnipapillata OC Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroida; Anthomedusae; Hydridae; OC Hydra. OG Mitochondrion XX RN [1] RP 1-8194 RA Voigt O.; RT ; RL Submitted (01-NOV-2007) to the INSDC. RL Voigt O., Department of Geobiology, University Goettingen, Goldschmidtstr. RL 3, D-37077 Goettingen, GERMANY. XX RN [2] RX DOI; 10.1186/1471-2164-9-350. RX PUBMED; 18655725. RA Voigt O., Erpenbeck D., Woerheide G.; RT "A fragmented metazoan organellar genome: the two mitochondrial chromosomes RT of Hydra magnipapillata"; RL BMC Genomics 9:350-350(2008). XX AH LOCAL_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP AS 1-500 TI920519523 72-570 c AS 501-1000 TI930907365 104-603 AS 1001-1500 TI939782056 313-812 c AS 1501-2000 TI930902273 177-676 AS 2001-2505 TI946069902 249-748 AS 2501-3000 TI946072693 287-786 c AS 3001-3500 TI946395341 131-630 c AS 3501-4000 TI946072464 241-740 AS 4001-4500 TI943304281 239-738 AS 4501-5000 TI943305199 265-764 AS 5001-5500 TI1241563257 41-540 c AS 5501-6000 TI943299034 416-915 AS 6001-6500 TI943308566 145-644 c AS 6501-7000 TI946073339 76-575 c AS 7001-7500 TI946071238 426-925 c AS 7501-8000 TI908319631 139-638 c AS 8001-8194 TI920519523 378-570 XX FH Key Location/Qualifiers FH FT source 1..8194 FT /organism="Hydra magnipapillata" FT /organelle="mitochondrion" FT /chromosome="1" FT /mol_type="genomic DNA" FT /db_xref="taxon:6085" FT repeat_region 1..195 FT /rpt_type=INVERTED FT /rpt_type=TERMINAL FT /note="includes 54bp copy of 3' end of COX1" FT CDS complement(142..>195) FT /pseudo FT /transl_table=4 FT /gene="COX1" FT /note="54bp non-functional copy of 3' end of COX1" FT /db_xref="PSEUDO:CAP49312.1" FT tRNA 236..306 FT /gene="trnM" FT /product="tRNA-Met (CAU)" FT rRNA 307..2044 FT /gene="lsu-rRNA" FT /product="large subunit ribosomal RNA" FT tRNA 2045..2113 FT /gene="trnW" FT /product="tRNA-Trp" FT CDS 2117..2872 FT /codon_start=1 FT /transl_table=4 FT /gene="COX2" FT /product="cytochrome c oxidase subunit II" FT /db_xref="GOA:G8JZS2" FT /db_xref="UniProtKB/TrEMBL:G8JZS2" FT /protein_id="CAP49313.1" FT /translation="MKNLIFLISFFTCLLFNNFIYKDIPEINQLSFQESASSCSNNLIF FT FHDNTMFYMIIILVLVGWLLFSIIINKNYNKFLLENNFIEIVWTLIPAIILIIIAIPSL FT FLLYSIDENVEPSLTVKIVGHQWYWSYEYSNFSPNIEFDSYMIPTTDLNQGDFRLLETD FT NDLVLPVNTKIKLIVSSADVIHCWTVPSLGVKVDAIPGRLNQLNFIINRPGKFFGQCSE FT LCGLNHSFMPISIYSVSQEKFINWSINKT" FT CDS 2874..3080 FT /codon_start=1 FT /transl_table=4 FT /gene="ATP8" FT /product="ATP synthase F0 subunit 8" FT /db_xref="GOA:B4F7M2" FT /db_xref="UniProtKB/TrEMBL:B4F7M2" FT /protein_id="CAP49314.1" FT /translation="MSQLDLSLYLNHYFVLLLLFFLLIILISLRFYNFFLVLNIRNNFI FT SNSSESINNNFKQFSILYNILKL" FT CDS 3080..3781 FT /codon_start=1 FT /transl_table=4 FT /gene="ATP6" FT /product="ATP synthase F0 subunit 6" FT /db_xref="GOA:B4F7M3" FT /db_xref="InterPro:IPR000568" FT /db_xref="InterPro:IPR023011" FT /db_xref="UniProtKB/TrEMBL:B4F7M3" FT /protein_id="CAP49315.1" FT /translation="MSSYFDHFLIIKIFGFLFDSHLVLILSIFIIFVALNFTFIIPSRI FT QLFFEMIINHFFQIVKENLGNNSQIYVLFLSTLFFYLLSINLLGFFIFTLPPTTHISLT FT FGLSFFIWLSIIVFGFFNFKSSYLSMFMPTGAPLGLSPLLVFIELASHISRPIALGMRL FT AANLTAGHILLTILSDFIFKMICFSSSFFNLFPLMIIIFMIILEIGVLVIQAYVFTLLC FT LIYLKDSLILH" FT CDS 3781..4566 FT /codon_start=1 FT /transl_table=4 FT /gene="COX3" FT /product="cytochrome c oxidase subunit III" FT /db_xref="GOA:B4F7M4" FT /db_xref="InterPro:IPR000298" FT /db_xref="InterPro:IPR013833" FT /db_xref="InterPro:IPR024791" FT /db_xref="UniProtKB/TrEMBL:B4F7M4" FT /protein_id="CAP49316.1" FT /translation="MEKYYHPFHLVNPNPWPFCISMGVLYLTLNTVAYFHKGFYYPLLL FT SFILIILFMILWFTDIFVESSLEGAHTKLVLTGLKLGFILFIISEILFFFSFFWAFFHS FT SLSPSVEIGINWPPLGIITLNPFSIPLLNTIILLSSGVSVTWCHHSLIQKNRNQSLISL FT IITITLGLLFTFLQALEYLESNFCISDSVYGSIFFVATGFHGIHVIIGTIFLSVCLLKI FT YFSHFTNSRHFTFEAASWYWHFVDVVWLFLYICIYWWGS" FT CDS 4619..5926 FT /codon_start=1 FT /transl_table=4 FT /gene="ND2" FT /product="NADH dehydrogenase subunit 2" FT /db_xref="GOA:B4F7M5" FT /db_xref="InterPro:IPR001750" FT /db_xref="UniProtKB/TrEMBL:B4F7M5" FT /protein_id="CAP49317.1" FT /translation="MIFNYNNLLIFTFVVFIILNLYLNKHSFFYLIPSILLFIIITQFL FT KADSFLWISMIIFIIILNNLHLKLENLILYSFILLSIIIIILSNNLIILYLSVEIQTFS FT LLVLIGSYRNNIKSLEASLKYFILSSISSGFFLLGLVYLFKTSISLDLNLFNFVLNNSS FT FFYSFSNSILILSLLFKLGLAPFHYWIADIYEGSDFVLILLLSSLCKLSIFIILLKFNN FT NFEMLMFLGGLSIVIGTIAGFNQTKIKRLIAYSGISNFGFIIISLSLNNIIGIEICLLY FT LFIYLFTNLFIIMILILYKDNIEFIIELSGYFMNNKILTIALVIITFSIAGIPPLLGFL FT SKFILISTLINYNYIITGCLCLLITCIGIGFYLRIIKILLFQNNNFYVSWNNIISLDKN FT NLYLNFIYLGFILYYTLFYLLNPKFFISLITYLLNL" FT CDS 5928..7760 FT /codon_start=1 FT /transl_table=4 FT /gene="ND5" FT /product="NADH dehydrogenase subunit 5" FT /db_xref="GOA:B4F7M6" FT /db_xref="InterPro:IPR001516" FT /db_xref="InterPro:IPR001750" FT /db_xref="InterPro:IPR003945" FT /db_xref="InterPro:IPR010934" FT /db_xref="InterPro:IPR018393" FT /db_xref="UniProtKB/TrEMBL:B4F7M6" FT /protein_id="CAP49318.1" FT /translation="MILTIIFLPLFNSLLCGFFGRFFGNKGVKLISFFLIIITLINSWI FT IFYEINFNTTFLYYILLDWFNLGLLSNSFNLKFDLITTNMLVLVITVSFFVHLFSYSYM FT ENDPHLPRFISYLSLFTFFMIILISSSNLIQLFIGWEGVGLCSYLLINFWYTRIQANKS FT AIKAMIINKLGDIGLLIGIIYLWIFTGSFEFNDIFIISITNNFYTLYIPLFFVLIGVIG FT KSAQLGFHMWLPDAMEGPTPVSALIHAATMVTAGVFLIIRMSPIFELSSTVLILIIIIG FT SLTSFFSATIGMVQNDLKKVIAYSTCSQLGYMIMICGFSFYDLSLFHLINHGFFKALLF FT LSAGSIIHVINDEQDMRKYGALKNFLPLIFIFIIIGSIALLGLPFLSGFYSKDLIVEVA FT LFSNFLSFSVWISISAVFITAFYSLRLIYLTFINNPQQSINNFNNIHESDYKIIISLSL FT LTLFSIFSGYIFQFIIIKDNLPNMIYNINKLLPLFLSILGIITAIIIFNNLNKTWNVIF FT TTYYKNIYLFLINNWYFDILINYILSKKISPLGYKITYKFIDNQILESLGPFYFNKTIG FT IISNKSSKIYLNSIYSYILITCVFFVFCILLNMN" FT CDS <7761..8053 FT /pseudo FT /transl_table=4 FT /gene="COX1" FT /note="293 bp non-functional copy of 3' end of COX1" FT repeat_region 8000..8194 FT /rpt_type=INVERTED FT /rpt_type=TERMINAL FT /note="5' region includes 54bp from the 3' end of COX1" XX SQ Sequence 8194 BP; 2869 A; 912 C; 926 G; 3487 T; 0 other; gggttggtgc ggcgcggggc cccctgcgat agccgcagca gggggtgcgc cagtgctgcg 60 cctggactgg gggggggggg ggatgggtga tcctctttta ggagagaaga aaaccgaaaa 120 gtttttttga ttcccttgtt tttaatgggt tgaatggttt ataaaaggta attcattaaa 180 agtatgatga ctaggaaaat ttttaagaat tttaattatt tgatcttcta aaagaagaag 240 agtaaactaa tggaaagtta tttggctcat gaccagaata taagggttcg attcctttct 300 ctttattttt gaattaaatt tttaaattat aaaaatagaa taatcaataa gaataatatt 360 aattaatatt attataatct tttcataaat gattaaattt aaaatgaact gaaacatctt 420 agtaattata aaataatatt atgaaagtaa aggcgattga aatcataatt ttttctttgg 480 atttacaaaa ttaaataatt gattatatct atagaattag tactgtgaag gaaattaata 540 aataatttat aataaaaaat gaaaatcatt taccttttgt ataatgggct tataaaataa 600 taattagcaa gctataaggc taaataactt ataaagttaa ttattcccga aacttaacga 660 tctaattgtg aataattttc agaatgaacc aataaatgat aaaaattttt ggataatttg 720 caattggcag tgaaaaacta atcgagttaa gagatagctg gtttttcatg aaatttatat 780 aagtaatttt ttttaaaaaa aagcagttat ttaatgcaaa gattatttaa cgagtaaaaa 840 acaatttata tccaacatca atgaactcta taaacattta gaaataagtt tatgatttaa 900 acaaaaagta aataagctta gaatcagcta tattttaaaa attacgtaaa actttacttt 960 aaaaaaatta taactttaca atatagttaa ttattatcat ttttgtggaa aatagtaatg 1020 aaatttcttt taatatatta tgaaaatttt aaaagagtaa taatataagc atgagtaaaa 1080 ttaaatttat cctatttttt tcttaattta ataaattgat taaggtaata caatttctca 1140 atttataagg aatatattaa aaatcttttc aagaaaattt taattattat tttgtaaaaa 1200 tctaaatcaa gttaggataa ataataaatt aatttttttt taaggaactc ggcaaaataa 1260 aatatcgact gtttaccaaa aacatagccc tctaaaatat tgaaggtgaa acctgcccaa 1320 tgatataaaa ataattataa cctaatttaa ataatattaa atggatgcag taactctgac 1380 tgtaataaag tagcataatt agttgtcatt taattgatgg agagaatgaa tggttacacg 1440 aatttttcac tgtcttaaaa aaaatttttt aaaattgaaa taatagttaa gatgctattt 1500 aaaattgtaa gacgaagaga ccctatagag ctttactata aacttttttc ttaaaaataa 1560 taaaaaatta ttaaaactag aaagtttggt agtttagttg gggcgactgt tttttaaaaa 1620 taacaaaaat aagcaatata ataaatttat ttattgtata attaaacaat ttaacaatta 1680 ctatagtagg ctataatgac ccgttattat aataaataat aaataacgat taattgataa 1740 aagctacctt agggataaca ggataatttt gttttagagt ccttatcaaa aacaaagttt 1800 gtcacctcta tgttgaatta agatatccta ataatgcagt agttattgaa ggtaggtctg 1860 ttcgaccttt aaaatcttac atgatttgag ttcattccgt cgcaagacag gaaggtttct 1920 atctacaatt ataaaattac tttagacttt tagtacgaaa ggaataaagt ttcacttagt 1980 taattaaaaa aactaataaa aaaattttga aagaatctaa aaatttaaag taattattta 2040 ataaagaggg ttgattaagt agatcaaata gtcttcaaaa ttattagtat tggttcgaat 2100 ccaataccct ctgtttatga aaaatttaat atttctaata agttttttca cttgtttatt 2160 atttaataat tttatctata aagatattcc tgaaataaat caactttctt tccaagaaag 2220 tgcttcatct tgtagtaata atttaatatt ttttcatgat aatacaatgt tttatatgat 2280 aattattctt gtattagtag gatgactatt attttcaata attattaata aaaattataa 2340 caaattttta ctagaaaaca attttattga aattgtatga acattaatac ctgctattat 2400 attaataatt atagctattc cttctctatt tttattatat tctattgatg aaaatgttga 2460 accttcttta actgtaaaaa tagttggtca tcaatgatat tgatcttatg aatattctaa 2520 tttttcacca aatatagaat ttgattctta tatgattcct actacagatt tgaaccaagg 2580 tgattttaga ttacttgaaa ctgataatga tcttgtttta ccagttaata caaaaattaa 2640 attaattgtt tcaagtgctg atgttattca ttgttgaaca gtaccttctt taggcgtaaa 2700 agtagatgct attccaggtc gtttaaatca attaaatttt attattaata gacctggtaa 2760 attttttggt caatgttcag aattatgtgg tcttaatcat tcttttatgc ctatttcaat 2820 ttattccgtt tctcaagaaa aatttataaa ctgatctatt aacaaaactt aaaatgtctc 2880 aattagattt atctttatat ttaaatcact attttgtttt actattatta ttttttttat 2940 taataatttt aataagttta agattttata attttttctt agttttaaac ataagaaata 3000 attttatttc aaatagttca gaatcaatta ataataattt taaacaattt tctatattat 3060 ataatatatt gaaattataa tgtcttccta tttcgatcat tttttaatta ttaaaatttt 3120 tgggttctta tttgattctc atttggtatt gatattatct atatttataa tttttgtagc 3180 tttaaatttt acttttataa tcccttcaag aattcaatta ttttttgaaa tgattattaa 3240 tcattttttt caaattgtaa aagaaaattt aggaaacaat tctcaaatat atgtattatt 3300 tctatcaact ttattttttt atcttttatc aattaattta ttaggatttt ttatttttac 3360 tttaccaccc actactcata tttcactaac tttcggatta tcatttttca tatgattatc 3420 aataatagta tttggatttt ttaattttaa aagttcttat ttaagtatgt ttatgccaac 3480 aggggctcct ttaggtcttt ctcctttatt agtatttata gaactagcta gtcatatttc 3540 tagacctata gctttaggaa tgcgtttagc agctaattta acagctggac atattttatt 3600 aactattctc tctgatttta tatttaagat gatatgtttt tcttcttctt tttttaattt 3660 atttccttta atgattatta tatttatgat tatattagaa ataggtgtct tagtaattca 3720 agcttatgtt tttactcttt tatgtttaat ttatttaaaa gatagtttaa ttctacatta 3780 atggaaaaat attatcatcc ttttcattta gtaaatccta atccttgacc attttgtata 3840 tcaatgggtg tattgtattt aacattaaat actgttgctt attttcataa aggattttat 3900 tatcctttat tattaagttt tattttaata attttattta tgattttatg atttacagat 3960 atatttgtag aatctagttt agaaggggct catactaaat tagttttaac aggtctaaaa 4020 ttaggtttta tactatttat aatttcagaa atattattct tcttttcttt tttttgagca 4080 ttttttcatt ctagtctttc tccctctgta gaaataggaa taaattgacc tcctttagga 4140 ataataactt taaacccatt ttctatacca ctattaaata ctattattct tttatcatca 4200 ggagtaagtg ttacttgatg tcatcatagt ttaatacaaa aaaatagaaa tcaaagttta 4260 attagtttaa taattactat tactttagga ttattattta catttttaca agctttagaa 4320 tacttagaat ctaatttttg catatctgat tctgtttatg gttctatctt ttttgtagct 4380 acaggatttc atggaattca tgttattatt ggtactatat ttttatcagt atgtttactt 4440 aaaatttatt tttctcattt tactaattct cgtcatttta cttttgaagc tgcatcatga 4500 tattgacact ttgttgatgt tgtttgatta tttttatata tatgtattta ttgatgaggt 4560 tcttaacttg ttcagattgg tataattaaa gttcgattct ttaactgtaa taattttcat 4620 gatttttaat tacaataatt tattaatatt tacatttgta gtttttatta tattaaattt 4680 atatctaaat aaacatagtt ttttttattt gattccatca atattactat ttattataat 4740 tacacaattt cttaaagcag attctttttt atgaattagt atgataatat ttatcattat 4800 tctaaataac ttacatttaa aattagaaaa cttaatttta tatagcttta ttttattgtc 4860 aataataata ataatattgt ctaacaatct aattatatta tatttatctg tagaaataca 4920 aactttttca ttattagttc taataggttc ttatagaaat aatataaaaa gcttagaagc 4980 aagtctaaag tattttattt taagtagtat ttcatctgga ttttttcttt taggtcttgt 5040 ctatttattt aagacttcaa tctcattaga tttaaattta tttaattttg ttttaaataa 5100 ctcatctttt ttttattctt ttagtaattc tatattaata ttatctcttt tatttaaact 5160 aggtctagcc ccatttcatt attgaattgc tgatatttac gaaggatctg attttgtact 5220 aatattatta ttatcttcct tatgtaaact atctatattt attatattat taaaatttaa 5280 caataatttt gaaatgctta tgtttttagg tggattatca attgttatag gaactattgc 5340 cgggtttaat caaactaaaa taaaaagatt aatagcttat agtggtattt ctaattttgg 5400 gtttattatc atatccttaa gcttaaataa tataataggt attgaaattt gtttattata 5460 tcttttcatt tatttattta caaatttatt tataattatg atattaatat tatataaaga 5520 taatatagaa tttattatag aactaagcgg ctattttatg aataataaaa ttttaacaat 5580 cgctctagtt attataacct tttctatagc aggaattcct ccacttttag ggtttttaag 5640 taaatttatt cttatttcaa ctttaataaa ttataactat attataacag gatgtttatg 5700 tctactaatt acttgtatag gtataggatt ttatttaaga ataataaaaa tacttttatt 5760 tcaaaataat aatttttatg tttcttgaaa taatattatt tctttagaca aaaataattt 5820 atacttaaat tttatttatt taggttttat attatattac acactatttt atttattaaa 5880 tcctaagttt tttatttctt taataactta tctattaaat ttataatatg attttaacta 5940 taattttttt acctttattt aatagtttat tatgcggatt ttttggtaga ttttttggta 6000 ataaaggagt taaattgatt tctttttttc ttattataat tacacttatt aattcttgaa 6060 ttatttttta tgaaattaat tttaatacta cttttttata ttatatatta ttagactgat 6120 ttaatttagg cttattaagt aactcattta atttaaaatt tgatttaatt actacaaata 6180 tgctagtttt agtaattact gtttcatttt ttgttcatct attttcttat tcttatatgg 6240 aaaacgaccc tcatttacca agatttatat cttatttatc cctatttacc ttttttatga 6300 taatattaat atcaagttct aatttgattc aactttttat aggatgagaa ggggttggat 6360 tatgttcata cttattaatt aatttttgat ataccagaat tcaggctaat aaatcagcaa 6420 taaaagcaat gattataaac aaattaggag atatagggtt attaatcgga ataatatatt 6480 tatgaatatt tactgggtct tttgaattta acgatatatt tataatctcc attactaata 6540 atttttatac actttatata ccattatttt ttgtattaat aggtgtaata ggaaaatctg 6600 ctcaattagg atttcacatg tgattacctg atgcaatgga agggcctact ccagtttcag 6660 cattaatcca tgcagctaca atggttacag ctggggtatt tttaattatt agaatgtcac 6720 ctatatttga actttcatct actgtattaa ttttaataat tattatagga agtttgactt 6780 cttttttttc agcaactata ggaatggttc aaaacgattt aaaaaaagta atagcatatt 6840 ctacttgtag tcaattaggt tatatgatta tgatctgtgg attttctttt tatgacttaa 6900 gtttatttca tctaataaac catgggtttt ttaaggcatt attatttctc agcgcaggat 6960 ctataattca tgttataaat gatgaacaag atatgagaaa gtatggtgct ttaaaaaact 7020 ttttaccttt aatattcatt tttataatca taggatctat agcattatta ggattaccat 7080 ttttatcagg attttattct aaagatttaa ttgtcgaagt agcattattt tcaaatttct 7140 tatctttttc tgtttgaatt agtattagtg ctgtatttat tacagccttt tattctttaa 7200 gattaattta tctcactttt attaataacc cacaacaaag tataaataat tttaacaata 7260 ttcatgaaag cgattataaa attattattt cattaagttt attaacattg ttttctattt 7320 tttctggata tatattccaa tttataatta taaaagataa tcttcctaat atgatttaca 7380 atattaataa attattaccc ctttttctta gtatactagg aattattaca gctataataa 7440 tatttaataa cctaaataaa acttgaaatg ttatctttac aacttattat aaaaatattt 7500 atttattctt aattaataat tgatattttg acatactaat taattatatt ctttctaaaa 7560 aaataagtcc tttagggtat aaaattactt ataaatttat agacaatcaa attttagaaa 7620 gtctaggacc attttatttt aataaaacta taggtataat ttctaataaa tctagtaaaa 7680 tttatttaaa ctctatttat tcttatattt taattacatg tgtttttttt gttttttgta 7740 ttctattaaa tatgaattaa cttttttccc tcaacatttc ttaggattag caggaatgcc 7800 tagaagatat gcagactttc cagatagctt atttacttga aatgctatca gctctttagg 7860 ctctattatt tctataatag gagtagtatg attcatttat gtaatttttg atgctttcta 7920 ttcagaagaa aaatttattt cttgaaataa cttagatgta gaaaaaataa atactttaga 7980 atgatcatta aattgtccac ctagtcatca tacttttaat gaattacctt ttataaacca 8040 ttcaacccat taaaaacaag ggaatcaaaa aaacttttcg gttttcttct ctcctaaaag 8100 aggatccccc cccccccccc ccccccagtc caggcgcagc actggcgcac cccctgctgc 8160 ggctatcgca gggggccccg cgccgcacca accc 8194 //