ID AY646511; SV 1; linear; genomic RNA; STD; VRL; 6496 BP. XX AC AY646511; XX DT 14-JUN-2004 (Rel. 80, Created) DT 14-JUN-2004 (Rel. 80, Last updated, Version 1) XX DE Citrus tatter leaf virus strain Kumquat 1, complete genome. XX KW . XX OS Citrus tatter leaf virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; OC Betaflexiviridae; Capillovirus. XX RN [1] RP 1-6496 RA Lin Y.-H., Su H.-J., Hung T.-H.; RT "Strain-differentiation and development of rapid detection for Citrus RT tatter leaf virus"; RL Unpublished. XX RN [2] RP 1-6496 RA Lin Y.-H., Su H.-J., Hung T.-H.; RT ; RL Submitted (21-APR-2004) to the INSDC. RL Dept. of Plant Pathology and Microbiology, National Taiwan University, RL Taipei 106, Taiwan XX FH Key Location/Qualifiers FH FT source 1..6496 FT /organism="Citrus tatter leaf virus" FT /host="kumquat" FT /strain="Kumquat 1" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:33759" FT CDS 36..6353 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q6ISX5" FT /db_xref="InterPro:IPR000606" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q6ISX5" FT /protein_id="AAT44871.1" FT /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFKSHSHPVSKMIENHLLYICIPSLLSSFRSVAFFSLRE FT SKVDNFIKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGEVSFTSFRDRVIGLRDQCLTRN FT KFPKVLFIHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYK FT VHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIPWANRKIRVTKLQSLFAHHVFSFDR FT GRACSEFNHFNKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAK FT LRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFE FT PTEFHLNMRKLLNDLATKGIEVPLSVMILDKVNFIETRFHARMFEIAEAIGVKLDSLGK FT RFDYETESEEYFSENGYLFIPSKANPSRNWILNSGSCKIDYTRLIRARRFRLKRDFIDK FT IAAGKVPQRQLLLELGPRLTFESGKNESEVNNEIEIIEGSEVANVPETSYVPLSTEDGQ FT GFEGSIPIDLINAFEPEEVKLPKRKRKNDCVFKAISAHLGIEVQDLLNFLVNEDISDEL FT LECIEEDKGLSHEMIEEVLVTKGLSMVYTSDFKEMAVLNRKYGINGKMYCTIKGNHCEL FT SSKECFIRLLKEGGEAQMSNENLNADSLFDLGKFVHSRERAVKLAKSIARGTTGLLSSF FT DPAFCKAMVTLSELFPENFSSVVGLRMGFAGSGKTHKVLQWINYTPNVKRMFISPRRML FT ADEVEGQVKGTSCQIHTWETALKKIDGTFMEVFIDEVGLYPPGYLTLLQMCAFRKIVKG FT QSERFLKSKLAELSKTCLNIRCFGDPLQLRYYSAEDTNLLDKTHEIDLLTGTIKHKYLL FT QGYRFGQWFKELIDMPTRMDESKFSRKFFADISSVKTEDYGLILVAKREDKGVFAGRIP FT VATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRSKIGFDFILKGNSLKEVQKMA FT QKTVWQFVLEGKSIPMERIVNMNPGASFYESPLDVGNSSIQDKASHDLFIMPFINLAEE FT EVDPEEVVGDVIKPVEWFKCHVPVFDTDPMLAEIFEKVAAKEKREFQSVLGLSNQFLDM FT EKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIKKSNWRREKSKFEEFESQGKEL FT LSEFLSMLPFEFKVSIKDIENGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHVFPFMK FT SQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFF FT CLDSFVTKNASIFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKL FT TLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRRHRILFAGDDMCSLSSLK FT RRRGERATRLLKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK FT ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNSKLLTGLSKSLIFEIGE FT GIGAEWLSSMSTISSRRSSQLTSKLTPSPHLNCTKMQPFLSQTYSTASKGLSQMSKFLQ FT DQGMDSYCLTLNSLMTLRLTPLERRAINTNIYIMESSWWESKPCCPTLEEWKGELLYMM FT GLVWIQKGVTSVLICLNSSLTVVTLGSDLSTVFQQLMQIWLKDVGSEWILIVHSMNRTR FT NCLLLTLGLHTDVSTQQGFSKLRLVIQGGLHRLSAAVRHSSLTKKSSWPSWITNPRCFW FT RKVHQMCMLKRDCLEATKFEDRAQFLPKGDQTQSCKKREDLGPSQLELKDLGKMSLEDV FT LQQARRHRVGVYLWKTHIDPTKELLTVPPPEGFKEGESFGGRELYLLLCNHYCKYLFGN FT IAVFGSSDKTQFPAVGFDTPPVHYSLTTTPKKGETEEEKKAREGSSGEKTKIWRIDLSN FT VVPELKTFAATSQHNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEK FT SPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESSLELEG" XX SQ Sequence 6496 BP; 1968 A; 1189 C; 1497 G; 1842 T; 0 other; aatttaacag cgcttaattt ccgcgcttta cgtcaatggc tttcacttac agaaaccctc 60 tggaaattgc aattaacaaa cttccaagca agcaatctga tcaattgctt tccttgacca 120 ccgacgagat tgaaaagacc ttagaagtga caaatcgctt cttttctttt tcaatcactc 180 cagaagatca agaattgttg accaaacatg gtctgacact tgcaccaatt ggatttaaat 240 cacactccca tccagtatcc aaaatgattg aaaaccatct tctgtacata tgtatcccta 300 gccttctatc ttcttttaga tcagttgctt tcttttcttt aagggagagc aaggttgata 360 attttattaa aatgcattca gtcttctcac atggaaaaat caagtcttta gggatgtaca 420 atgcaatcat cgatgggaag gacaaataca gatatggtga ggtctctttt acctccttca 480 gagacagggt gattggtttg agggaccaat gcttaacacg taataaattt ccaaaagtcc 540 tctttatcca tgacgagttg cactttttaa gcccttttga tatggccttt ttatttgaga 600 ccataccaga aattgacaga gttgtagcta caactgtctt tccaatcgaa ctactttttg 660 gtgataaggt ttcaaaagaa cccagggttt acacttacaa ggttcatggt tcctccttct 720 ccttttaccc cgatggtgtg gcctctgaat gctatgagca aaatcttgca aactcaaaat 780 ggcctttcac ctgtagtggc atcccatggg ccaacaggaa gatcagagtt accaaattgc 840 agagcctttt tgctcatcac gttttttcat ttgatagggg aagggcttgc agcgaattca 900 accacttcaa taagccgagt tgcttacttg cggaagagat gcgtttgctc acaaaaagat 960 ttgacaaggc tgtcatcaac aggagcacgg tttcctctct cagcacttat atggcgtgtc 1020 tcaaaactgc aaatgcagcc tcagcagttg ccaagttaag acagctggag aagagagatt 1080 tgtaccctga tgaactaaat ttcgtttatt cttttgggga acacttcaaa aactttggaa 1140 tgagagacga ctttgatgtg tcagtgttgc aatgggtgaa agataagttc tgtcaggtaa 1200 tgcctcattt tatagctgct agtttttttg aaccgacaga atttcaccta aacatgagaa 1260 agctgttaaa tgacctagct accaaaggga ttgaagttcc tttatccgtg atgattctgg 1320 acaaagtaaa cttcattgaa accaggtttc atgctagaat gtttgaaata gcagaggcca 1380 taggggtgaa gttagactcg cttggaaaaa gatttgatta tgaaactgaa agcgaagagt 1440 acttttcaga aaatggttat ctctttatcc cctctaaggc aaatccaagt aggaattgga 1500 ttttaaattc tggctcctgt aaaattgact acacacggtt gatcagggcc agaagattta 1560 gattgaaaag ggactttata gataaaattg ccgctgggaa ggtccctcaa cgacagctac 1620 ttctagaatt aggtccgagg ttgacatttg aatctgggaa aaatgagagt gaggtgaaca 1680 atgagatcga gattatagag ggttccgaag ttgccaatgt gccagaaaca tcctacgttc 1740 cattgtcaac tgaggacgga caaggatttg aaggttcaat accaatcgac ttgataaatg 1800 catttgaacc agaagaagtc aaactcccga aaagaaaaag gaaaaatgac tgcgttttca 1860 aagcaatatc tgctcaccta ggaattgagg ttcaagacct tttaaatttt ctggtcaatg 1920 aggacatttc agatgagcta ctagaatgca ttgaagagga taaaggtttg tcacatgaga 1980 tgattgaaga agttctagta accaaagggc tttccatggt ttacacctct gatttcaaag 2040 aaatggcagt tcttaataga aaatatggaa tcaatgggaa aatgtactgc acaatcaaag 2100 gtaatcattg tgagttgagc tcaaaggagt gctttatcag gctgttgaaa gaaggtggtg 2160 aagcacaaat gtcaaatgaa aatctgaatg ctgactcact atttgacctt ggaaagtttg 2220 tacatagtcg ggaaagagcg gtcaaattgg caaagtctat agctcgaggg accacaggtc 2280 ttttgagttc ctttgatccg gccttctgca aagccatggt cactctatca gagctatttc 2340 ctgagaattt ctcttcagtg gttgggttga gaatgggatt cgctggctct ggcaagacac 2400 acaaggttct tcagtggata aactacactc caaatgtcaa aagaatgttc attagtccta 2460 gaagaatgtt agcagatgag gttgaaggac aagttaaagg aacgtcttgc cagatccata 2520 catgggaaac tgctctgaaa aagattgatg gaacctttat ggaagtcttc attgatgaag 2580 taggtttgta tccacccgga tatcttacac ttttacaaat gtgtgctttt agaaagatag 2640 tgaagggcca gagtgagagg ttcttaaaaa gtaagttggc cgagttgtca aagacgtgcc 2700 tgaatattag atgttttggt gacccactgc aactaaggta ctattctgct gaagacacaa 2760 atctcctgga caaaacacat gagattgacc tgctgactgg aaccattaag cataaatacc 2820 tccttcaggg gtataggttc ggtcaatggt tcaaagagtt gatagatatg ccaactagaa 2880 tggatgagtc aaagttctca agaaaattct ttgcagacat ttcaagtgtg aaaactgagg 2940 actatgggct aatattagtg gcaaaaaggg aagataaggg agttttcgct gggagaattc 3000 ctgttgccac agtcagtgaa tctcaaggga tgactattag caaaagagtg ttgatatgcc 3060 tagaccaaaa tctatttgct gggggtgcaa acgccgcaat tgttgcaatc actagatcaa 3120 aaattgggtt tgacttcatc ctcaaaggaa attcgctgaa agaagtgcag aaaatggcac 3180 aaaagacagt atggcagttc gtgctagaag gcaaaagtat cccaatggag aggatagtga 3240 acatgaaccc cggggctagc ttttacgaga gtcctttgga tgtgggaaac tcatcaatcc 3300 aagataaagc ttctcatgat ttgtttataa tgccttttat aaacttggct gaagaggaag 3360 ttgatcctga ggaagtcgtg ggagatgtaa ttaaacctgt tgagtggttt aagtgtcatg 3420 tccctgtgtt tgacacagat ccgatgcttg cagagatctt cgaaaaggtt gcagcaaaag 3480 agaaaaggga atttcagtct gtgctcggtc tctcaaatca attcttggat atggaaaaga 3540 atgggtgcaa aatagacata ctgccttttg ctcggcaaaa cgtttttcca catcatcaag 3600 cttcagatga tgtcaccttc tgggcaggtg ttcagaaaag aattaaaaag tcaaactgga 3660 ggcgagagaa gtcaaaattt gaggaatttg agagtcaagg gaaagaattg ctttctgagt 3720 ttttgtcaat gctgccattc gagtttaaag tgagcatcaa ggacatcgaa aacggggaaa 3780 aaagctttct ggagaaaaga aaactgaaat ccgagaagat gtgggccaat cactcagaaa 3840 ggtctgacat tgactggaaa cttgaccacg tcttcccctt tatgaagtcc caatactgca 3900 ctaaggaagg taaaatgttc actgaagcaa aagctggtca aaccttagca tgtttccagc 3960 acattgtcct tttccgtttt ggtcctatgt tgagggcaat tgaaagtgct ttccttagaa 4020 gttgcgggga ttcatattat atacactcag gaaagaattt cttttgtttg gacagcttcg 4080 tgaccaaaaa tgcaagcatt tttgatggat tttcaatcga gtccgactat acagcttttg 4140 attcatctca agaccatgtt atcttggctt ttgagatggc attactgcaa tatttgggcg 4200 tgtcaaagga gtttcaactg gactacctca gattgaaatt aactctaggg tgtaggcttg 4260 ggtctttagc cataatgaga tttacagggg agttctgtac ttttctgttc aacacatttg 4320 ccaatatgct tttcactcag ctaaagtata aaatagatcc aaggagacac agaattctgt 4380 ttgctgggga cgacatgtgc tcattgagct ctcttaagag aaggagaggg gagagggcca 4440 caagactgtt gaagagtttc tctctcactg ctgtggagga agtaagaaaa tttccaatgt 4500 tctgtgggtg gtacttgagc ccttatggca tcatcaagtc tccaaaactg ctttgggcaa 4560 gaatcaagat gatgagtgaa agacagcttc tcaaggagtg tgtagacaat tacttgtttg 4620 aagcaatatt tgcctacaga ttaggtgaga ggctttacac aattctgaaa gaagaggatt 4680 ttgaatacca ctaccttgta attaggtttt ttgtcaaaaa ttcaaagtta ctgactggtt 4740 tgagcaagag ccttatattt gaaattgggg aaggtattgg agcagaatgg ctatcgtcaa 4800 tgtcaaccat ttcctcaagg aggtcgagtc aactgacctc aaaattgacg ccatctcctc 4860 atctgaactg tacaaagatg caaccttttt taagccagac gtactcaact gcatcaaaag 4920 gtttgagtca aatgtcaaag tttcttcaag atcaggggat ggactcgtat tgtctgactt 4980 taaactcctt gatgacactg agattgactc cattagaaag aagagcaata aatacaaata 5040 tttacattat ggagtcatct tggtgggaat caaagccatg ctgcccaact ttagaggaat 5100 ggaagggaga gttattgtat atgatggggc ttgtttggat ccagaaaggg gtcacatctg 5160 ttcttatctg tttaaattcg agtctgactg ttgttacttt gggctcagac ctgagcactg 5220 tctttcaaca actgatgcaa atttggctaa aagatgtagg ttcagagtgg attttgattg 5280 tccacagtat gaacaggaca cggaactgtt tgctcttgac attggggttg cataccgatg 5340 tgtcaactca gcaaggtttc tcgaaactaa gactggtgat tcagggtggg cttcacaggc 5400 tatcagcggc tgtgaggcac tcaagtttaa cgaagaaatc aagttggcca tcctggatca 5460 caaatccccg ctgtttctgg aggaaggtgc accaaatgtg catgttgaaa agagactgtt 5520 tagaggcgac aaaattcgaa gatcgcgctc aatttctgcc aaaaggggac caaactcaaa 5580 gctgcaagaa aagagaggat ttaggtccct ctcagctaga attgaaagat ttggggaaaa 5640 tgagtttgga agacgtgctt caacaagcga ggcgccaccg ggtaggagtg tatctctgga 5700 agactcacat agacccgaca aaggaacttc tgacggttcc tccccctgaa ggattcaaag 5760 aaggtgaaag ctttggaggc agagagcttt accttcttct ctgcaatcac tattgtaaat 5820 atttatttgg aaatattgct gtttttgggt cttctgataa gacccagttc cccgctgtcg 5880 gttttgatac tccaccagtt cattacagtt tgacaacgac cccaaaaaaa ggggaaactg 5940 aagaagagaa gaaagccaga gaagggtcgt ctggcgaaaa aactaagatt tggaggatcg 6000 acttgtcaaa tgttgtccct gagttgaaaa cctttgctgc tacttctcag cataactctc 6060 tgaacgaatg tacgttccga aagctttgtg agccttttgc tgatttggct cgtgaatttc 6120 ttcatgaacg gtggtccaaa ggattggcca ccaacatata caagaaatgg cccaaagctt 6180 ttgagaaaag cccatgggtg gcatttgatt ttgctactgg tctaaaaatg aatcgtctaa 6240 cacctgatga aaagcaggtg attgacagaa tgaccaagag gctttttcgt actgaaggac 6300 agaaaggggt tttcgaggca ggttcggaga gtagcttgga actggagggt taggagtcgt 6360 ttaaaattcc gcaaatttgg tcgcggtcta gcaggttgac atgcctgcct ttatacttaa 6420 ataaagggtt cctccggttt tctgtgcatt tccgggttag tgtggttttt ctagagtcta 6480 gagtttgtcc actcta 6496 //