ID AY629583; SV 1; linear; genomic DNA; STD; VRL; 4682 BP. XX AC AY629583; XX DT 28-JUN-2004 (Rel. 80, Created) DT 11-SEP-2004 (Rel. 81, Last updated, Version 2) XX DE Avian adeno-associated virus strain DA-1, complete genome. XX KW . XX OS Avian adeno-associated virus strain DA-1 OC Viruses; ssDNA viruses; Parvoviridae; Parvovirinae; Dependovirus. XX RN [1] RP 1-4682 RX DOI; 10.1016/j.virusres.2004.05.010. RX PUBMED; 15351493. RA Estevez C., Villegas P.; RT "Sequence analysis, viral rescue from infectious clones and generation of RT recombinant virions of the avian adeno-associated virus"; RL Virus Res. 105(2):195-208(2004). XX RN [2] RP 1-4682 RA Estevez C.N., Villegas P.; RT ; RL Submitted (19-MAY-2004) to the INSDC. RL Poultry Diagnostic and Research Center, University of Georgia, 965 College RL Station Rd., Athens, GA 30602, USA XX FH Key Location/Qualifiers FH FT source 1..4682 FT /organism="Avian adeno-associated virus strain DA-1" FT /strain="DA-1" FT /mol_type="genomic DNA" FT /country="USA" FT /db_xref="taxon:281492" FT LTR 1..142 FT CDS 244..2235 FT /codon_start=1 FT /product="rep protein" FT /note="nonstructural protein" FT /db_xref="GOA:Q6GWF3" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR014835" FT /db_xref="UniProtKB/TrEMBL:Q6GWF3" FT /protein_id="AAT48614.1" FT /translation="MRSYYEVIVQLPNDVESQVPGISDSFVNWITSREWTLPEDADWDL FT DQVDQVQLTLGDKIQREIRNHWGTMAKEPDFHYFIQLEQGEVFFHLHVLLETCSVKPMV FT LGRYIRHIQQKIVSKVYCGHEPAMEGWMRVTKTKNFGGANKVRAESYIPAYLIPKQQPE FT VQWAWTNVPEYIKACLHRELRASLARLHFEEAGLSQSKENLARTADGAPVIATRVSKRY FT MELVDWLVEKGITTEKEWLLENRESFRSFQASSNSARQIKTALQGAIQEMLLTKTAEDY FT LVGKEPVSDDEIRQNRIYKILELNHYDPAYVGSILVGWCQKKWGKRNTLWLFGPATTGK FT TNIAEAIAHAVPFYGCVNWTNENFPFNDCVEKMIIWWEEGKMTAKVVETAKAILGGSRV FT RVDQKCKASVPIEPTPVIITSNTNMCYVIDGNTTTFEHKQPLEDRMFKLELLTRLPDDF FT GKVTKQEVRQFFRWSQDHLTPVIPEFLVRKAESRKRPAPSGEGYISPTKRPALAEQQQA FT SESAEPVPTRYRIKCSKHCGMDKMLFPCQICESMNRNINICAIHKTTECKECFPEYGDK FT DTVPELPPCTEHNVSRCYQCHSGELYRVTSDSDEKPAPESDEGTEPSYAPCTIHHLMGK FT SRGLVSCAACRLKNSTLHDDLDDGDLEQ" FT CDS 2253..4469 FT /codon_start=1 FT /product="capsid protein" FT /note="structural protein" FT /db_xref="GOA:Q6GWF2" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:Q6GWF2" FT /protein_id="AAT48615.1" FT /translation="MSLISDAIPDWLERLVKKGVNAAADFYHLESGPPHPKANQQTQES FT PEKDDSRGLVFPGYKYLGPFNGLDKGKPVNEADAAALEHDKAYDLELKDGHNPYFEYNE FT ADRRFQERLKDDTSFGGNLGKAIFQAKKRVLEPFGLIEQPDNTAGTGEKRPERVDDFFP FT KKKKAKTEQGKAPAQTGEDPGEGTSSNAGSSAPSSVGSSVMAEGGGGPMGDAGQGADGV FT GNSSGNWHCDSQWLDNGVVTRTTRTWVLPSYNNHLYKRIQGPGGTDPNNKFFGFSTPWG FT YFDYNRFHCHFSPRDWQRLINNNWGIRPKAMRFRLFNIQVKEVTVQDSNTTIANNLTST FT VQVFADKDYQLPYVLGSATEGTFPPFPADIYTIPQYGYCTLNYNNEAVDRSAFYCLDYF FT PSDMLRTGNNFEFTYTFEDVPFHSMFAHNQTLDRLMNPLVDQYLWAFSSVSQTGSSGRA FT LNYSRATKTNMATQYRNWLPGPFVRDQQIFTGASNITQNNVFNVWDKGKQWVIDNRINM FT MQPGPAAATTFSGEPDRQAMQNTLAFSRTVYDQTTSTTDRNQLLITNEDEIRPTNSVGI FT DTWGVVPNNNQSKVTAGTRAAINNQGALPGMVWQNRDIYLQGPIWAKIPDTDNHFHPSP FT LIGGFGCKHPPPQIFIKNTPVPANPSETFQTAKVASFINQYSTGQCTVEIFWELKKETS FT KRWNPEIQFTSNFGNAADIQFAVSDTGSYSEPRPIGTRYLTKPL" FT LTR 4540..4682 XX SQ Sequence 4682 BP; 1215 A; 1301 C; 1233 G; 933 T; 0 other; tggccagttt ccaaaacagg ctcgctcgct cactcgggcc ccggccccaa gggggccggt 60 agcgacgcct ttggcgtcgc ggcccgagtg agcgagcgag cctgttttgg aaactggcca 120 gcactccggt gaggtaatgc cgtcacgtgg tcgggaacgg gaacgggaaa tctcgcgaga 180 acgtaaacaa atataagacg acgccacacg gcgctgcgtc atacgcgcgc gcgcaccggc 240 gagatgaggt cgtactacga ggtcatcgtt caactgccga acgacgtcga gagtcaggta 300 cctggaatct ccgattcatt cgtcaactgg attacgtcgc gagaatggac gttgccggaa 360 gacgccgatt gggatttgga ccaggtcgat caagttcaac tgacgctcgg cgacaaaatc 420 caacgggaga ttcgaaatca ctgggggacg atggcgaaag aaccggactt tcactatttt 480 atccaactgg aacaaggtga ggtgttcttt catttgcacg tcctgctgga aacgtgttcc 540 gtgaagccga tggtactcgg aagatatatt cgacatattc aacaaaaaat tgtcagtaaa 600 gtctactgcg gccacgagcc cgcgatggaa ggatggatgc gggtgaccaa gaccaaaaat 660 ttcgggggcg cgaacaaggt ccgggccgag tcgtatattc ccgcctacct gattccgaaa 720 cagcaaccgg aagtgcagtg ggcgtggact aacgtgcccg agtatataaa agcgtgcctg 780 caccgagaac tgcgtgccag tctcgcgcga cttcacttcg aggaggcggg gctctcgcaa 840 tccaaggaaa atctcgcgag aactgcagac ggcgctcccg tgatcgcgac ccgcgtcagc 900 aaacgctaca tggagctcgt ggattggctc gtggagaagg ggatcaccac cgagaaggaa 960 tggctgctgg aaaacagaga aagctttcgg agcttccagg cctcgagcaa ctcggcgcgt 1020 cagatcaaga cggccctgca aggcgccatc caggagatgc ttctgaccaa gacggcggag 1080 gactacctcg tcggaaaaga acccgtctcg gacgacgaga ttcgtcagaa ccgcatctac 1140 aagattttgg aactgaacca ctacgaccca gcgtacgtgg ggagtatttt ggtcgggtgg 1200 tgccagaaga aatggggcaa gcgaaacacg ctgtggctgt tcggacctgc gaccaccggc 1260 aagaccaaca tcgcggaggc tattgcccat gctgtgccgt tctatggatg cgttaactgg 1320 accaacgaga actttccgtt caacgactgc gtcgaaaaga tgattatctg gtgggaagag 1380 ggcaaaatga ccgccaaggt ggtggaaacg gctaaagcga ttctgggagg atctcgggtg 1440 agagtggacc aaaaatgcaa agcttcggtt ccgatcgaac cgacgccggt cattattacc 1500 agtaacacca acatgtgtta tgtcatcgac gggaacacga ctacgttcga gcataagcag 1560 ccgttggagg acaggatgtt taagctcgag ctgttgactc gtttacccga tgactttggt 1620 aaggtgacca aacaggaggt gcgtcaattc ttcaggtggt cccaggatca cctgacccct 1680 gtgatcccag aattcctggt gcggaaggcg gagtctcgca aaagacccgc cccctccggg 1740 gaaggctata taagcccgac aaagcggccc gcgctcgcag agcagcagca ggcgtcggag 1800 agcgcggagc cggttcccac caggtatcgt atcaaatgct cgaaacattg cgggatggat 1860 aaaatgttgt ttccttgcca aatttgtgaa tcgatgaaca gaaatattaa tatatgtgcg 1920 attcataaaa caacggaatg taaagaatgt tttccggaat acggggataa ggacactgtg 1980 ccagaactac ccccctgtac agaacataac gtgtctcgtt gttatcaatg tcattcgggc 2040 gaattgtatc gcgtgacttc ggactctgac gagaaacccg cccccgagag tgatgaaggc 2100 actgagccat cctatgctcc ctgcacgatt caccatttga tgggcaagag tcgcgggtta 2160 gtgtcgtgtg ctgcatgtcg tttgaaaaat agtacgttgc atgatgactt ggatgacggt 2220 gatcttgaac aataaatgat tgaaatatag ccatgtctct catttctgat gcgattccag 2280 attggttgga gcggttggtc aaaaagggag tgaatgctgc ggctgatttc taccatttgg 2340 aaagcggtcc tcctcatcct aaggcaaatc agcaaactca agaatctcct gaaaaggacg 2400 attcgagagg tctcgtgttc ccgggttaca agtatctagg ccctttcaac ggtctagata 2460 aaggaaaacc cgtcaacgag gcagacgctg ccgccttaga gcacgacaag gcttacgacc 2520 tcgaactcaa ggacgggcac aacccgtact ttgagtacaa cgaggccgat agacgtttcc 2580 aggaacgtct caaagacgat acctctttcg gagggaatct cggtaaagcc atctttcagg 2640 ccaaaaagag ggtcctcgag ccctttggtc tgattgaaca acccgacaac acggccggga 2700 ccggggagaa gcgtcccgaa cgcgtcgacg actttttccc gaaaaagaag aaggccaaga 2760 ccgagcaagg caaagcccct gctcaaacgg gcgaagaccc cggagaagga acctcttcca 2820 acgctggatc aagcgccccc tctagtgtgg gatcatctgt catggctgaa ggaggtggcg 2880 gtccaatggg cgatgcaggc caaggtgccg acggagtggg caattcctcg ggaaattggc 2940 attgcgattc ccaatggctg gacaacggag tcgttacccg aaccactcga acctgggtcc 3000 tgcccagcta caacaaccac ttgtacaagc ggatccaagg accgggagga accgacccca 3060 acaataaatt ctttggattc agcaccccct gggggtactt tgactacaac cgattccact 3120 gccacttctc cccccgagac tggcaacgac tcatcaacaa caactggggc atccgaccca 3180 aagcgatgcg ctttagactc tttaacatcc aggttaaaga agtcactgtc caagactcca 3240 acaccaccat cgccaacaac ctcaccagca cggtccaagt ctttgcggac aaggactacc 3300 agctgccgta cgtcctcgga tcggctacag agggcacctt cccgccgttc ccagcggata 3360 tctacacgat cccgcagtat ggttactgca cgctaaacta caacaacgag gcggtggatc 3420 gttcggcctt ctactgtcta gactatttcc cctcagacat gctgcggaca ggaaataact 3480 ttgaattcac ttacacgttc gaggacgttc ctttccatag catgtttgct cacaaccaga 3540 cgctagaccg gctgatgaat cctctcgtcg atcagtacct gtgggctttc agttccgtca 3600 gccaaacagg ctcgtctgga cgggcactca attattcacg cgcgaccaaa accaatatgg 3660 caacccagta cagaaactgg ttacctggac ccttcgtccg ggatcagcaa atctttacgg 3720 gggctagcaa catcacccaa aacaacgtgt tcaacgtttg ggataaaggc aagcagtggg 3780 tgatagacaa tcggatcaat atgatgcagc ccggccctgc agcagcgacc acctttagcg 3840 gagaacccga ccgtcaagcc atgcaaaaca cgctggcctt tagtcggacg gtctacgacc 3900 agacaaccag tacgaccgat cgtaaccagt tgctcattac caacgaagat gaaatcagac 3960 ccaccaactc ggtcggcatc gacacgtggg gagtagttcc caacaacaac cagtccaagg 4020 tgaccgccgg cactcgcgcg gccatcaaca accaaggggc gcttcccggg atggtgtggc 4080 aaaacagaga catttacctc caaggaccca tttgggccaa aatccccgac acagacaatc 4140 acttccatcc gtccccgctt attggcgggt ttggctgcaa gcatccccct ccccagattt 4200 tcattaaaaa cacacccgtc ccggccaacc cttcggaaac gttccagacg gccaaggtgg 4260 cctccttcat caaccagtac tcgaccggac agtgcaccgt cgaaatcttt tgggaactca 4320 agaaggaaac ctccaagcgc tggaaccccg aaatccagtt cacctccaac tttggcaacg 4380 cggccgacat ccagtttgct gtctccgaca ccggatccta ttccgaacct cgtcccatcg 4440 gtacccggta ccttaccaaa cctctgtaaa ttaaaccctt caataaaccg tttatgcgta 4500 actgtacttc cgtctcctgt cgttattcag tcacatgata cggcattacc tcaccggagt 4560 gctggccagt ttccaaaaca ggctcgctcg ctcactcggg ccgcgacgcc aaaggcgtcg 4620 ctaccggccc ccttggggcc ggggcccgag tgagcgagcg agcctgtttt ggaaactggc 4680 ca 4682 //