ID AY300023; SV 1; circular; genomic DNA; STD; PRO; 6286 BP. XX AC AY300023; XX DT 06-NOV-2003 (Rel. 77, Created) DT 06-NOV-2003 (Rel. 77, Last updated, Version 1) XX DE Haemophilus paragallinarum plasmid p250, complete sequence. XX KW . XX OS Avibacterium paragallinarum OC Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; OC Pasteurellaceae; Avibacterium. OG Plasmid p250 XX RN [1] RP 1-6286 RX DOI; 10.1099/mic.0.26493-0. RX PUBMED; 14600229. RA Terry T.D., Zalucki Y.M., Walsh S.L., Blackall P.J., Jennings M.P.; RT "Genetic analysis of a plasmid encoding haemocin production in Haemophilus RT paragallinarum"; RL Microbiology (Reading, Engl.) 149(Pt 11):3177-3184(2003). XX RN [2] RP 1-6286 RA Terry T.D., Zalucki Y.M., Walsh S.L., Blackall P.J., Jennings M.P.; RT ; RL Submitted (16-MAY-2003) to the INSDC. RL Department of Microbiology, University of Queensland, School of Molecular RL and Microbial Sciences, St. Lucia, Queensland 4072, Australia XX FH Key Location/Qualifiers FH FT source 1..6286 FT /organism="Avibacterium paragallinarum" FT /plasmid="p250" FT /strain="HP250; TW1" FT /mol_type="genomic DNA" FT /serovar="A" FT /db_xref="taxon:728" FT gene 86..1066 FT /gene="repB" FT CDS 86..1066 FT /codon_start=1 FT /transl_table=11 FT /gene="repB" FT /product="RepB" FT /note="replication protein" FT /db_xref="GOA:Q6WAV8" FT /db_xref="InterPro:IPR000525" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q6WAV8" FT /protein_id="AAQ73621.1" FT /translation="MSSELTIYKDNYLVEASYRLTLMEQRIVLYAISKLNPKEPQREHS FT FYVNDLIKFFPDIEPSSAYRALREAVYKLSERWVRTEHPKYIKEFRWVSSRTYFKDEGR FT IDIAFTPEIMPYLSQLEQQFTRYQLKNISSFKGTYSIRLYELLTQYRSTGNRVINLEDL FT RDRLQVKDKYPTFKAFNQWVIKPAIKEINEKSDLKVEYDTIALRRAVAALLFTVTPKEA FT EKPVKKRPKFPHKNKYGKFVKLDRIDPKMSSAEYGSYVRDCLKILEDFYSNIEDVPNED FT LLYYWIFLAVNQSHKSKLGSKNTFANELRRRGYKIVGCELVKLEK" FT gene 1482..2360 FT /gene="hmcD" FT CDS 1482..2360 FT /codon_start=1 FT /transl_table=11 FT /gene="hmcD" FT /product="HmcD" FT /db_xref="UniProtKB/TrEMBL:Q6WAV7" FT /protein_id="AAQ73622.1" FT /translation="MELVKKLRVCMKKKTLLLFILNPILCYSSEYNFITLNDEFDSYGK FT FTLLTSSSLYLRNSHEFLRRNIFDIESYNNSYGSEKYQVLSFEQGVRYGLTNKINILGN FT ISGSYSKYSFLSSEEIGKEKSFNKLRFDTINIGLSTKLNDSESDWNKSIYFSVDAISKR FT ESLFKNFYFDYIIDKTIDPIVLSLKTGVKYFSKIKSNNLNFKPSNEINIKPRVDFLVNQ FT KISLSLSTEIQLRSSEKYNGKVTNVSGIENFLSMGISYNLDLKNRLYFETSFNTTGNSG FT ATIYLNLEKDL" FT gene 2323..2919 FT /gene="hmcC" FT CDS 2323..2919 FT /codon_start=1 FT /transl_table=11 FT /gene="hmcC" FT /product="HmcC" FT /note="haemocin processing protein" FT /db_xref="GOA:Q6WAV6" FT /db_xref="InterPro:IPR005074" FT /db_xref="UniProtKB/TrEMBL:Q6WAV6" FT /protein_id="AAQ73623.1" FT /translation="MLQFTLTLRRICDIILLLCISGSLLAKEISSYNELKNFNVIRQTK FT TNSCGAAALATMLKYKFHLSEINEDVILSKMKNKNEEASFFELAKISKTFNINAIGISL FT TLKELLNIKQPVIAYVNNNLNNDHFVIINGIINKELLISDPAVGNYSLRASDFEKIWIL FT REGEKGDVLYLYSEKKDYLEFIDNIEKKHRISLRN" FT gene 2922..3629 FT /gene="hmcB" FT CDS 2922..3629 FT /codon_start=1 FT /transl_table=11 FT /gene="hmcB" FT /product="HmcB" FT /note="haemocin processing protein" FT /db_xref="GOA:Q6WAV5" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q6WAV5" FT /protein_id="AAQ73624.1" FT /translation="MYIYEIYRKNKNKFFLDYLFPIKFNNPISIFFGENGIGKSTIMES FT LAVHLGCPAEGGSKNFNFSTENTHIQVPDIVVKKGTRFPKDVFFYRAETFYTFMSEMKR FT LDTPESGGEKIKYYYGGVELHKLSHGESMNALYTNRFHKNGLYILDEPEASLSLNNQLK FT FIEKIVTLSRDGAQFIIATHSPIIMQTPSSELLEVTKNGVKIVNFRDTNVYYMYREIMQ FT DNSHTYLSSILNL" FT gene 3656..3928 FT /gene="hmcA" FT CDS 3656..3928 FT /codon_start=1 FT /transl_table=11 FT /gene="hmcA" FT /product="HmcA" FT /note="haemocin structural protein" FT /db_xref="InterPro:IPR004039" FT /db_xref="UniProtKB/TrEMBL:Q6WAV4" FT /protein_id="AAQ73626.1" FT /translation="MKKFFILLIAIIFSSASLASSSELQSLFKSSQNNSATVLSQKEMS FT EVKGGARSPVYTCSVCGAKHGGVYSPNVCHNCYNKGFRINGIRRP" FT gene 3976..4290 FT /gene="hmcI" FT CDS 3976..4290 FT /codon_start=1 FT /transl_table=11 FT /gene="hmcI" FT /product="HmcI" FT /note="haemocin immunity protein" FT /db_xref="UniProtKB/TrEMBL:Q6WAV3" FT /protein_id="AAQ73627.1" FT /translation="MLRGLKNLALFYTDYNIPDGFIPYLENGFFKVKKIRINISNKKFF FT YYYIIYKQKHKRKAKKLSLLLEKSKNCFNSNYERKIGKLLGYSKDDIEFYIETCINSIP FT " FT gene complement(4417..5298) FT /gene="int" FT CDS complement(4417..5298) FT /codon_start=1 FT /transl_table=11 FT /gene="int" FT /product="putative integrase" FT /db_xref="GOA:Q6WAV2" FT /db_xref="InterPro:IPR013762" FT /db_xref="InterPro:IPR024456" FT /db_xref="InterPro:IPR024457" FT /db_xref="UniProtKB/TrEMBL:Q6WAV2" FT /protein_id="AAQ73625.1" FT /translation="MRDLVYSVSVLCKHNKDGSFGTAAERHKSLKAAMQAISDAGYGIR FT DVKQLKGKHIRFLVEKWKSDPNLSIGTIKNRMSHLRWLSERIGNPRIVERSNSSYDIEN FT RKYVDNYTNKAKNLSMERLGALTDDFVRYSLLLQQEFGLRREESIKFQPKFADRGTEIC FT LKGSWCKGGRERTIPITSQSQRNLLDKIHAFCQQQGTKSLIPAHKNYEQQMRTYEYQTT FT KVGELKNHGLRHAYAQRRYETLSGLSSPKNGGKTSRKLSEGERQRNLESRLQVSSELGH FT NREEITAVYLGR" XX SQ Sequence 6286 BP; 2187 A; 997 C; 1109 G; 1993 T; 0 other; ggtatagaaa aatgcggtca atggtataga ataataaaaa tactatgcct ttaaccgcat 60 ttttctatac ctttgaggtt tataaatgag cagtgaatta acaatttata aagataatta 120 tcttgtagaa gctagttaca gactaacttt aatggagcag agaatagttc tgtatgctat 180 ttctaagcta aatccaaaag aaccacagag agagcatagt ttctatgtta atgatttaat 240 taaattcttc cctgatattg aacctagtag tgcttatagg gctttgagag aagcagttta 300 caagttgagt gagagatggg ttagaaccga acatccaaaa tatattaaag aatttcgatg 360 ggtatcatct agaacttatt tcaaagatga aggacggatt gatatagcat ttacccctga 420 aataatgcct tatctttcgc aattagaaca acaatttaca agataccaac taaaaaacat 480 atcatccttt aagggaactt attctataag actttatgag cttttaactc aatatagatc 540 tactggaaat cgtgtaatca atctagaaga tttgagagat cggttacaag ttaaagataa 600 ataccctaca ttcaaagctt ttaatcaatg ggtaattaag cctgctatca aggaaatcaa 660 tgagaaatca gatctgaaag tggaatatga cacaatagct ttaagacgtg ctgttgccgc 720 attgcttttc actgtaaccc caaaagaagc ggaaaaaccc gttaaaaaac gcccaaaatt 780 cccacacaaa aacaagtacg gtaagtttgt gaagctagat cgtatcgatc ctaaaatgag 840 ttcggctgaa tacggcagtt acgtaagaga ttgcctgaaa atccttgaag atttctattc 900 aaacattgaa gacgtaccga atgaagattt gctttactac tggatttttc ttgcggtaaa 960 ccaaagccat aaatcaaaac taggcagtaa aaacaccttc gctaatgagc ttagacggcg 1020 tggctataag attgttggtt gtgaactggt taaacttgaa aagtaaggtg atcgggcata 1080 caatggaatt aggtcggggg caggttgcaa tcctaccccc ttcctagccg ttaggctaat 1140 ctatttaaca agtaaactag caaattaagc attgcgagtg cttttaagct agccgtaaca 1200 gctagtaaaa ttagcgttac tatcaggaat aattctgata ctttcacata aatcacctcc 1260 ttagcactac aaggctaagc ggctaggctc acactattag cggtagtgcg agccgccgcc 1320 atagtgcgag aatgatttta gcatagaacc gcctaaaagg gcggtttttg ttttatgtaa 1380 acccttgtca agcgggcaac ttgttgcacg cttgacaagg gttgaatatg tgacttgttt 1440 gttttttgac aaggagggag aaactatagt aatttgacgt tatggagtta gttaaaaaat 1500 taagggtgtg tatgaaaaag aaaacattac ttttatttat attaaatcca atactatgtt 1560 attcaagtga atataatttt attaccttaa atgatgaatt tgatagctat ggaaaattta 1620 cattattgac atcatcctca ttatatttaa gaaatagtca tgagtttttg agaagaaata 1680 tatttgacat agaaagttat aataactctt acggaagtga gaagtatcaa gttttatcat 1740 ttgaacaagg ggttaggtat ggtttaacaa ataagattaa catacttgga aatattagtg 1800 gttcatatag caaatactca tttttatcta gtgaagaaat aggtaaggaa aaatcattta 1860 ataaattaag gtttgatacc ataaatattg gattgtccac taaattaaat gattctgaat 1920 cagactggaa taaatctata tatttttcag tagacgccat aagcaagaga gaaagtttat 1980 tcaaaaactt ttattttgac tatataatag acaaaacaat agaccctata gttttatctt 2040 taaaaacagg tgtaaaatat ttctcaaaaa taaaaagcaa caatctcaat tttaaaccat 2100 caaatgaaat aaatataaag cctagagtgg attttttagt taaccaaaaa atatccttaa 2160 gtttatctac agagattcaa ttaagaagca gtgaaaaata caatggaaaa gtaacaaatg 2220 tatctggaat agaaaatttc ttatcaatgg ggatttcgta taatttagat ttgaaaaatc 2280 gtttatattt tgaaacttct tttaatacga cgggaaactc aggtgctaca atttacctta 2340 accttgagaa ggatttgtga tataatactc ctattatgta tatcaggttc tcttctagcc 2400 aaagaaataa gctcatacaa tgaacttaaa aattttaatg ttattaggca aacaaaaacc 2460 aattcatgtg gagcagcggc tcttgctacg atgcttaaat ataaattcca tcttagcgaa 2520 attaacgaag atgtcatttt atccaagatg aaaaataaaa atgaagaagc ctcctttttt 2580 gaacttgcaa aaatttcaaa aacattcaat atcaacgcta ttggaatatc cttaacatta 2640 aaggagttat taaatataaa gcaaccagta attgcttatg taaataacaa tttgaacaac 2700 gatcattttg tcatcattaa tggtattatt aacaaagaat tattaatatc agatccagcg 2760 gttggtaatt attcattaag agcatcagat tttgaaaaaa tatggatatt aagggagggt 2820 gaaaaaggag atgttttata cttatatagt gaaaaaaaag attacttaga gtttattgat 2880 aatattgaaa aaaaacatag aatttcccta aggaattaaa tttgtatata tatgaaatat 2940 atagaaaaaa taaaaataaa ttttttcttg attatttatt tccaataaaa tttaataacc 3000 caatatcaat cttttttggt gagaatggaa taggtaaatc gactataatg gaatctctag 3060 ccgtacacct tggatgccca gccgaaggag gttcaaaaaa ttttaatttt tcaactgaaa 3120 atacacacat ccaagtacct gatatcgtgg taaaaaaagg aactagattt cctaaggatg 3180 tatttttcta tagagcagaa actttctata cctttatgag cgagatgaaa aggttagaca 3240 ccccagaatc aggaggggag aagataaaat attactatgg gggagttgaa ttgcataagt 3300 tatctcatgg cgaatcaatg aatgcactat atacaaatag atttcataaa aatggcctgt 3360 acatattaga tgaacctgag gcatccttat ctctcaacaa tcagcttaaa tttattgaaa 3420 aaatcgtaac cctaagtaga gatggggctc aattcatcat tgcaacccat tcacctatta 3480 tcatgcaaac ccctagttca gagttactag aagtaacaaa aaacggcgta aaaatagtta 3540 actttagaga tacaaatgtg tactatatgt atcgtgaaat tatgcaagat aattctcaca 3600 cctatctaag cagtatacta aatctatgaa taataaatta agaggagtaa cagtaatgaa 3660 gaaatttttt attttattaa tagcaattat tttttcatca gcttcgttag caagtagcag 3720 tgaactacaa tccttattca agtcatctca aaataacagt gctactgtgt tatctcagaa 3780 agagatgtct gaggttaaag ggggagctag atcacccgtg tatacctgtt cagtgtgcgg 3840 agcgaaacat ggaggggtat attctcctaa tgtatgccat aactgctaca ataaaggatt 3900 tagaataaac ggtattagac gtccataaat tttatgggag taattggtcc ccatgaagga 3960 aaagagctag atttaatgtt aagaggttta aaaaatttag ctctttttta tactgattat 4020 aatattccag atgggtttat tccatatctg gagaatggtt tttttaaagt aaaaaaaatt 4080 agaataaata tttctaataa aaaatttttt tattactata taatatataa acagaaacat 4140 aaaagaaaag caaaaaaact atcactgtta ctagaaaaga gtaaaaactg ttttaattca 4200 aattatgaaa gaaaaatagg aaagctatta ggttatagta aagatgatat tgaattttat 4260 atagaaactt gtataaattc aataccttga agaagtgata cctgtagtga acgagcttta 4320 ctccataaaa taaaaatccc cgtgattatt accgataaaa gctaataatc acggggatta 4380 agcaaaggaa cgaagcgact gcggtagctt gccttgctat cgcccaagat aaacagctgt 4440 aatttcttct cggttatgtc ccagctcact gcttacctgc aatctactct ccaaattacg 4500 ctgtcgttcg ccctcagaga gttttctaga ggtttttcca ccgttcttag gggaagataa 4560 gcctgaaaga gtttcgtaac gtctctgtgc atatgcgtgt cgtaaaccgt gattttttaa 4620 ctcacccact tttgtggttt ggtattcgta agttcgcatt tgttgctcat agtttttatg 4680 agcgggtatc agtgattttg ttccttgttg ttggcaaaat gcgtggattt tatcaagtaa 4740 gtttcgttga gattgtgatg taatggggat tgttcgttct ctcccccctt tacaccaact 4800 tcctttcaag caaatttcag ttcctcgatc agcaaattta ggttgaaatt taattgactc 4860 ttctcttctt agtccaaatt cttgctgaag tagaagggaa tacctcacaa aatcatccgt 4920 taatgcccct aaacgctcca tagagagatt tttagctttg ttggtatagt tatctacata 4980 ttttcgattt tcaatgtcat agcttgaatt agagcgttct acgatacgag gatttccgat 5040 acgttcggaa agccatcgta aatggctcat tctgttttta attgtaccta ttgagagatt 5100 gggatcagat ttccatttct cgactaaaaa tctgatgtgt ttacctttta attgtttaac 5160 atcgcgaata ccatacccag catcagaaat cgcttgcatt gcagctttaa gtgatttatg 5220 gcgttctgca gctgtaccaa agcttccgtc tttgttgtgt ttacacaaga cggaaaccga 5280 atagaccaga tcgcgcataa tgctctccga taaatgttgt taagtgttag tttgataccg 5340 attagagcgt aggtaaccga taaaatgtgc tgaaatacag cgtaacaagt tagggcgtat 5400 cataacttgt gtagttttga atgttacaag catgtttaag tcatttttat tctccgtaat 5460 cattaaaaat caaagattac agcttaccca gtggggcaaa atgtaatccc catcagggtg 5520 gacgattcat tcaactgtcg tcagaactgg cattccaacg tgtccgcagt tttaaaaggt 5580 tcttgtaaga ttgccatacc ctaccgataa ccgagccgca aaggacgaag catttcaggt 5640 tattactgct cctacgttca tatttaatgg ctgaactgca agcccaaaag gcaaacggat 5700 atatagccgt tctctatttt tgattgaaaa gtaatttatc aatctaggtt aagtcaacat 5760 tcccagtttt cactgagcct tttttcagaa tgctaaaggc atttcggcta atgaacacaa 5820 ctaccgctac gggctagtcc gttatttttc aagtgttcta taacgtttcc cgtgaagtgg 5880 gttaatctgc atattgcggt taaaattata gctaatttat atttatcatt ccatactaaa 5940 ttttgtaatc cctctttttt taagagattt atatgtacaa atttaaaatc cgtcattccc 6000 caaaaactat gtttttagcg aatgacggat tttatttcac taccgccttc gtttgctgaa 6060 tccttgcaaa acttgcaaca agttgcccgc tctgcaagga ttttttgttg aagaaaaaag 6120 aaaaaattag ggcggaaagc cccaaaaaag agccgtttag gctctatatt tttttattct 6180 tgtttttatt cttgttttcg acactcttca acccttgttc cacaaggggt aagagaatta 6240 aaggtataga aaaatgcggt caatggtata gaaaaatgcg gtcaat 6286 //