ID AY275539; SV 1; linear; genomic RNA; STD; VRL; 7059 BP. XX AC AY275539; AF458480-AF458482; XX DT 01-JAN-2004 (Rel. 78, Created) DT 01-JAN-2004 (Rel. 78, Last updated, Version 1) XX DE Avian encephalomyelitis virus strain L2Z, complete genome. XX KW . XX OS Avian encephalomyelitis virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; OC Picornaviridae; Tremovirus. XX RN [1] RP 1-7059 RA Wei L., Liu J., Yao W.; RT "Determination of the Whole Genome of Avian Encephalomyelitis Virus Isolate RT from China"; RL Unpublished. XX RN [2] RP 1-7059 RA Liu J., Wei L., Yao W., Zhang F., Zhou J., Kwang J.; RT ; RL Submitted (15-DEC-2001) to the INSDC. RL Animal Health Biotechnology Laboratory, Institute of Molecular Agrobiology, RL 1 Research Link, The National University of Singapore 117604, Singapore XX RN [3] RP 1-7059 RA Wei L., Liu J., Yao W.; RT ; RL Submitted (11-APR-2003) to the INSDC. RL Beijing Academy of Agriculture and Forestry Science, Animal Husbandry and RL Veterinary Medicine, Banjing Street, Beijing, Beijing 100089, China XX CC On or before Jan 1, 2004 this sequence version replaced CC gi:22901270, gi:22901272, gi:22901274. XX FH Key Location/Qualifiers FH FT source 1..7059 FT /organism="Avian encephalomyelitis virus" FT /isolate="L2Z" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:70796" FT CDS 495..6899 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q6WQ42" FT /db_xref="HSSP:1HAV" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR007053" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:Q6WQ42" FT /protein_id="AAN09930.2" FT /translation="MSKLFSTVGRTVDEVLSVLNDEDTESYAGPDRTAVVGGGFLTTVD FT QSSVSTATMGSLQDVQYRTAVDIPGSRVTQGERFFLIDQREWNSTQSEWQLLGKIDIVK FT ELLDQSYAVDGLLKYHSYARFGLDVIVQINPTSFQAGGLIAALVPYDQVDIESIVAMTT FT YCHGKVNCNINYVVRMKVPYIYSRGCYNLRNSAYSIWMLVIRVWSRLQLGSGTSTQITI FT TTLARFVDLELHGLSPLVAQMMRNEFRLSSSSNIVNLANYDDARAKVSLALGQEEFSRD FT SSSTGGELVHHFSQWTSIPCLAFTFTFPGTVGPGTHIWSTTVDPFSCNLRASSTVHPTN FT LSSIAGMFCFWRGDIVFEFQVFCTKYHSGRLMFVYVPGDENTKISTLTAKQASTGLTAV FT FDINGVNSTLVFRCPFISDTPYRVNPTTHKSLWPYATGKLVCYVYNILNAPASVSPSVS FT INVYKSAADLELYAPVYGVSPTNTSIFAQGKEDEGGFFSVPEVEQHVVEDKEPQGPLHV FT TPFGAVKAMEDPQLARKTPGTFPELAPGKPRHTVDHMDLYKFMGRAHYLWGHEFTKTDM FT QYTFQIPLSPIKEGFVTGTLRWFLSLFQLYRGSLDITMTFAGKTNVDGIVYFVPEGVAI FT ETEREEQTPLLTLNYKTSVGAIRFNTGQTTNVQFRIPFYTPLEHIATHSKNAMDSVLGA FT ITTQITNYSAQDEYLQVTYYISFNEDSQFSVPRAVPVVSSFTDTSSKTVMNTYWLDDDE FT LVEESSHSSFDEIEEAQCSKCKMDLGDIVICSGEKAKHFGVYVGDGVVHVDPEGNATNW FT FMKRKATVKKSKNLDKWCFALSPRIDRTLICETANLMVGREVEYDIFVKNCETYARGIA FT SGDYGTKEGEKWKTLLSAVGVAAMTTTMMAMRHQLLDTSLTKLPQKVGEVTNEVRKILE FT DTSAGVREFKEKVSSILRKTWPGKTSIKIMKWTFRIVKMCVGVGLCYAHGWDSKPVTAV FT VTMFSMDFLDLVIDGIEIGRMIIHELTTPKAQGLSEINQVLSIAKNAKDVIKMLIEIFC FT KVIERITGEHGKKIQWAQDKKEEIMNVLERAEKWITTSDDHSEGIECLKLVRSIQSVIR FT GEESLKELAGELRAVGTHVLNKLGRLDKPNAPILVRAEPTVLYLYGNRGGGKSLASMAI FT AVKLCKELGISHVEGIYTKPIMSDFWDGYAGQPVVIMDDLGQSTSDEDWTNFCQLVSSC FT PLRLNMANLEKKGTQFNSPFIIASSNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFST FT HAMLDVAKAKKAGAYCNLDCLDFQKISDLASTPVSVQDIVLALLHTNVDKQTVMGNIIQ FT YWAQSNPREVFDTMAEGKNSGKYLWLFEKIKTSKWYILGCVGAALSVSVLGVFAYHMIK FT NHFRDQQHDQSAYSAAIKPLRVVRLEQSDAQSVVDISNVVHGNLVRVGVGPNEARIHWL FT NNGWGVYNTYILMPYHGIKDADVDDDLYIERAGTIYSTNMKMVQVLFLESREGDLVLIN FT VPRLPKFRDIRNHFSTEENIRRAEGMPGTLCTLDHERFTLVTESDLKMVEAATYVCEDD FT KGVRTDISVGRSWKAKACTVAGMCGGALVTSNNKMQNAIVGIHVAGGAPAISRVITKEM FT IEEMLKTRAQCSRIWKTEFVEKKISVGSKTKYHKSPLYDFCPQKVIKCPTKLFYQGEID FT VMQVMLAKYSSPIVSEPLGYATVVEAYTNRMVSFFSEPRQLTYDECINGIEGLDAIDLK FT TSAGFPYNTLSLKKSDLIINGKKAQRLQQDVEKMEEDLHMNRSIQVVFTTCAKDELRPL FT SKGMLGKTRAIKACPVSFTILFRKYLGYALAQIQSHPGFHTGIAVGVDPDQDWHCMWYS FT IVTQCDLVVGLDFSNYDASLSPFMIYHAGRVLGQICGLDPRLVDRIMEPIVNSVHQLGS FT MRYYVDGSMPSGTPATSVLNSIINVVNISHVLCALEKISVFEVFKLSKILTYGDDVLFC FT IKKESLDQKSFPLSSFVQGLKELGMSPTGADKMEVKVTPVHKMSFLKRTFYVDEWSICH FT PRISEETVYSMLAWKSDNASMKHVIETSIWFMFHHGPRKYVIFCTCLRGVLCRVGIGLY FT IPTYKELEVRYDRLVKDRVIDDSF" XX SQ Sequence 7059 BP; 1912 A; 1356 C; 1806 G; 1985 T; 0 other; tttgaaagag gcctccggag tgtccggagg ctctctttcg acccaaccca tactgggggg 60 tgtgtgggac cgtacctgga gtgcacggta tatatgcatt cccgcatggc aagggcgtgc 120 taccttgccc cttgacgcat ggtatgcgtt atcatttgcc ttggttaagc cccatagaaa 180 cgaggcgtca cgtgccgaaa atccctttgc gtttcacaga accatcctaa ccatgggtgt 240 agtatgggaa tcgtgtatgg ggatgattag gatctctcgt agagggatag gtgtgccatt 300 caaatccagg gagtactctg gctctaacat tggcacattt gatgtaaccg aacctggttc 360 agtatccggg ttgtcctgta ttgttacggt gtatctgtct tggcacactc acagggtatt 420 tttgggtaat cctttcctac tatctgatag ggtggcgtgc ccggccacga gagattaagg 480 gtagcaattt aaacatgagc aaactatttt ctactgtagg caggactgtt gatgaggttt 540 tgtctgtgct caatgatgag gatactgaat cttatgctgg ccctgatcgc actgcagtag 600 ttggcggagg atttctgaca acggtagacc agagttcagt tagcacggct acaatgggaa 660 gtttacaaga tgtacagtac aggactgcag tcgatattcc tggttctaga gtgacacaag 720 gtgagaggtt cttccttatc gatcagcgtg agtggaactc aacacagagt gaatggcagt 780 tattgggcaa gattgacata gtaaaagagc tgcttgatca gtcgtatgct gttgatggcc 840 ttttgaagta ccattcttat gcaaggtttg gcttggatgt cattgttcag attaatccaa 900 catcattcca ggcagggggc ctcatagcag ctctcgtacc ttatgaccag gttgacattg 960 aatcaattgt tgccatgacc acttattgcc atggcaaggt taattgcaac ataaactacg 1020 ttgtaaggat gaaggtgcca tatatataca gtcgaggttg ttacaacctt aggaactcag 1080 catactccat ttggatgctt gtgataagag tgtggtcacg gctgcagttg ggatctggca 1140 cttcaacaca gattactatc accaccttgg ctaggtttgt ggatttggaa ctgcatggac 1200 ttagcccttt ggtcgcacag atgatgcgca acgaatttcg actgtcgtca tctagcaaca 1260 ttgtcaattt ggctaattat gacgatgcaa gagccaaagt gtctctagcg ctgggacaag 1320 aagagttttc cagagactcg tcaagtaccg ggggggaatt ggtgcatcat ttttcacagt 1380 ggacgtccat tccgtgcctt gccttcactt ttacattccc cggcacggta gggccaggca 1440 ctcacatctg gtcaaccacg gtggaccctt tttcctgtaa cttgagggcg tctagcactg 1500 tgcaccccac taacttgagc tcgattgcgg gtatgttctg tttttggaga ggtgacattg 1560 tatttgagtt tcaagtcttt tgcaccaagt atcattccgg caggttgatg tttgtgtatg 1620 tgcctggcga tgaaaacaca aaaatcagca ccttaactgc aaaacaagca tctactggtc 1680 ttactgctgt ttttgatatc aatggtgtaa attcaacact ggtgtttaga tgccctttca 1740 tctctgacac accttacagg gtgaatccaa cgactcataa gtccctctgg ccttatgcaa 1800 ctggcaagct tgtgtgctat gtctacaata tactgaacgc acctgccagt gtatcaccaa 1860 gcgtgtccat taatgtgtac aaaagtgctg cggatctgga gttgtatgca cctgtttatg 1920 gggtttctcc caccaacacc tcaatttttg ctcaagggaa agaggatgaa ggaggatttt 1980 tcagtgtgcc tgaagtggag caacatgttg ttgaggataa ggaaccacag ggacctttgc 2040 acgtgacacc ttttggcgct gttaaagcta tggaggaccc ccaattggcc aggaaaacac 2100 ctggcacatt ccctgaatta gctcctggta aacctcgaca tacagtggac cacatggatc 2160 tgtataagtt catggggcgt gcccattact tgtggggaca tgaattcacc aaaactgaca 2220 tgcagtacac attccagata ccattaagtc ccattaaaga gggttttgtg acgggtacac 2280 ttaggtggtt tttaagtctt ttccaactgt atcgtggttc tctcgacatt accatgacat 2340 ttgcaggaaa aactaatgtg gatggcattg tgtactttgt gcctgagggt gttgcgatag 2400 agactgagag ggaggagcag acccctttgc tcacattgaa ctataaaaca tcggtaggtg 2460 ccattaggtt taatactgga caaactacga atgtccagtt taggatccct ttctacacgc 2520 cactggaaca catcgcaacc cattctaaaa atgcgatgga ttcagtcttg ggggcaatca 2580 caacccagat cactaactat agtgctcagg atgagtattt gcaggttacc tactacatca 2640 gtttcaatga agattcacag ttttctgttc ccagagcggt gccagtggtc agctcattca 2700 ctgacacatc tagcaaaaca gtgatgaata catattggct tgatgatgac gagttggtag 2760 aagagtcctc ccattctagt ttcgacgaaa ttgaggaggc ccaatgttcg aaatgtaaaa 2820 tggatttggg ggacattgtg atctgtagtg gagagaaggc aaaacacttt ggtgtgtatg 2880 ttggagatgg tgttgtacat gtggatccag aaggcaatgc cactaactgg tttatgaagc 2940 gaaaagctac agtcaagaag agcaaaaatc tggacaaatg gtgctttgcc ttgtctccac 3000 gcatagatag gacactcata tgtgagacag ccaacctgat ggtgggacgc gaggttgagt 3060 atgatatctt tgtgaagaat tgtgagacat atgctcgggg tattgcatca ggcgactatg 3120 ggacaaaaga aggagaaaaa tggaagacct tactttctgc tgtgggtgta gccgccatga 3180 ccacaacgat gatggctatg agacaccaat tattggacac atcgctcacc aaattgccac 3240 aaaaagttgg ggaagttacc aatgaggtac gcaagattct tgaggatacg agtgcaggtg 3300 ttagagagtt taaggaaaaa gtctctagca tactcaggaa gacttggccc gggaagacat 3360 caataaaaat aatgaagtgg actttcagga ttgtgaagat gtgtgttggt gtgggtctgt 3420 gctacgcaca tggatgggac tcaaagcctg tgactgctgt ggtcacaatg ttttccatgg 3480 attttcttga tttggtgata gacggtatag agatagggcg catgataatt catgagctca 3540 caaccccaaa agctcaagga ctttctgaga taaaccaagt cttgtccatt gcaaaaaatg 3600 ccaaagacgt catcaagatg ttgatagaga ttttctgtaa agttattgaa aggatcactg 3660 gtgaacatgg taagaaaatc cagtgggccc aggacaagaa ggaggaaatc atgaatgtct 3720 tggagagagc tgaaaagtgg attacaacta gtgatgacca ttcagagggt attgagtgct 3780 tgaagttagt taggtcaata cagtcagtca ttaggggtga agaatctctt aaagaattgg 3840 caggtgagtt gcgtgctgtt ggtacgcatg ttctgaataa gttgggtaga ctagacaaac 3900 caaatgcgcc tattttagtc agggctgagc ccacggtttt gtatctttat ggcaacagag 3960 gagggggcaa gagtttggct tcaatggcga ttgctgtgaa attgtgcaag gagttaggaa 4020 tctcgcatgt ggaaggcatt tacacgaaac ccatcatgtc ggacttctgg gatggatatg 4080 ctggtcagcc agtagtgata atggatgact taggacaatc tacatcagat gaagattgga 4140 caaatttttg ccagttggtg tcctcctgcc ctttacggtt aaatatggcc aatttggaga 4200 agaaagggac acagttcaac tcaccattca ttatagcatc ttctaatctt tcccatcctt 4260 gtccgaagac agtgtactgt acagatgcca tcgctaggag gttgcatatt aaggtcaagg 4320 ttagcccgaa agaagaattc tctactcatg ccatgcttga cgtggcaaag gccaagaaag 4380 caggtgctta ttgcaacctt gactgtttgg acttccagaa gatcagtgac ctcgcatcca 4440 caccagttag tgtccaagat atagtgctgg ccctgttgca taccaatgtt gacaagcaaa 4500 ccgtgatggg gaacatcata cagtattggg cgcagtccaa ccctagagag gtttttgaca 4560 caatggctga gggaaagaat tctggtaaat atttatggtt gtttgagaaa atcaagacat 4620 ctaaatggta tatattagga tgtgtgggag cagctctatc agtgtctgtc ttgggtgtgt 4680 ttgcgtatca catgattaaa aaccatttca gagatcaaca acatgatcag tctgcttact 4740 ctgccgcgat caagcccctt agagttgttc gcttagaaca atcagatgcg caatcagttg 4800 tggatatatc caatgtggtg catggcaatc tggttagagt gggagtaggg cctaatgaag 4860 ctaggattca ctggttgaat aatgggtggg gtgtttataa cacctatatt ctgatgccat 4920 atcatggcat aaaagatgct gatgttgatg atgatctata cattgagaga gcagggacca 4980 tttactcgac caacatgaag atggtccaag ttttgttctt ggagtcccgt gaaggtgatc 5040 tggtgttgat aaatgtccct cgtttgccta aatttaggga catacgcaat cacttttcta 5100 ctgaggagaa catacgcagg gcagaaggca tgccagggac tttgtgcact ttggaccatg 5160 agaggttcac ccttgttact gagagcgacc ttaagatggt ggaggcagct acatatgtct 5220 gcgaagatga caagggtgtg cgcactgata ttagtgttgg gcgcagttgg aaggcgaagg 5280 cttgtacggt cgcagggatg tgtggtggtg ccttggtcac ttctaacaac aaaatgcaga 5340 atgcgattgt aggtattcat gttgctggag gggcccccgc aatttctaga gtgatcacaa 5400 aagagatgat agaggagatg ctcaagacac gagcacaatg tagtaggata tggaagactg 5460 agtttgtgga aaagaagata tctgtggggt ctaaaacgaa gtaccacaag tcccctttat 5520 atgatttttg tccacagaag gttattaaat gtcccactaa gttgttctat caaggagaaa 5580 ttgatgttat gcaagtcatg ttggccaaat attcgtctcc gattgttagt gagcccttag 5640 ggtacgccac cgtcgtggag gcttatacca accgtatggt cagtttcttt tctgagcctc 5700 gtcagttgac ctatgacgag tgcataaatg gtattgaagg tcttgatgct atagatttga 5760 agacgtcagc tggctttccg tacaacactc taagtctcaa gaagagtgat ttgatcatta 5820 atggcaagaa ggcacaacgt ctgcagcagg acgtcgagaa gatggaagaa gacttgcaca 5880 tgaatcgatc cattcaggtg gtatttacca cgtgtgccaa agacgaattg cgtcctctaa 5940 gtaagggtat gctggggaag accagagcca taaaagcttg ccccgtttcg ttcaccatcc 6000 tatttcgcaa gtatttggga tacgctttgg cgcagattca aagccaccct ggctttcaca 6060 cagggatagc agtgggcgtg gaccctgacc aagattggca ctgtatgtgg tacagtattg 6120 ttactcaatg cgaccttgtt gttggtcttg acttttccaa ctatgatgct agtctgtccc 6180 cgtttatgat ataccatgct gggagggttc tgggccaaat ttgtggtttg gacccaaggt 6240 tggtggatag aataatggag cctattgtta attccgttca tcagttgggc tccatgagat 6300 actatgtcga tggttctatg ccatctggca cacctgctac atcggtgctc aattctataa 6360 ttaatgttgt gaacatctcc catgtgttgt gtgcattgga gaaaataagt gtatttgagg 6420 ttttcaaatt atccaagatc ctcacttatg gcgatgacgt attattttgt ataaagaagg 6480 agtccttaga ccagaagagt ttcccgctat ctagttttgt tcaggggctg aaagagctgg 6540 gaatgagccc cactggtgct gataagatgg aagtcaaggt cacgccagtg cataagatga 6600 gtttcttaaa gagaacattc tatgtggatg agtggtccat ctgtcatccg cgtatttctg 6660 aggagactgt ttattcgatg ctggcttgga agagcgacaa tgcatccatg aagcatgtga 6720 tagaaacgag tatatggttt atgttccatc atggcccccg gaagtatgtt atattctgta 6780 cttgcctgcg cggtgttctg tgccgtgtgg gtattgggct ctacattcca acttacaaag 6840 agctggaggt gaggtatgat aggcttgtca aggatagggt catagatgat agcttttaga 6900 ttttacatat ttgagtttcc attggggtgt agttttagtg agtataggag cttatgtatg 6960 gttaaatgat agggttggtt tagatttttc atttatcctt gaatttttaa tcataggggg 7020 attatagcat tcaaaaaaaa aaaaaaaaaa aaaaaaaaa 7059 //