ID AY112724; SV 1; circular; genomic DNA; STD; PRO; 3538 BP. XX AC AY112724; XX DT 01-MAY-2003 (Rel. 75, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Bifidobacterium longum strain RW048 plasmid pNAC1, complete sequence. XX KW . XX OS Bifidobacterium longum OC Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; OC Bifidobacteriaceae; Bifidobacterium. OG Plasmid pNAC1 XX RN [1] RP 1-3538 RX DOI; 10.1016/j.plasmid.2003.12.003. RX PUBMED; 15003705. RA Corneau N., Emond E., LaPointe G.; RT "Molecular characterization of three plasmids from Bifidobacterium longum"; RL Plasmid 51(2):87-100(2004). XX RN [2] RP 1-3538 RA Corneau N., LaPointe G., Emond E.; RT ; RL Submitted (15-MAY-2002) to the INSDC. RL Bureau of Microbial Hazards, Food Directorate, Health Canada, Banting RL Research Centre, Tunney's Pasture, P.L. 2204A2, Ottawa, Ontario K1A 0L2, RL Canada XX FH Key Location/Qualifiers FH FT source 1..3538 FT /organism="Bifidobacterium longum" FT /plasmid="pNAC1" FT /strain="RW048" FT /mol_type="genomic DNA" FT /db_xref="taxon:216816" FT CDS complement(join(3235..3538,1..449)) FT /codon_start=1 FT /transl_table=11 FT /product="unknown" FT /note="Orf3; similar to EcoRII protein of Escherichia coli FT encoded by GenBank Accession Number AJ224995" FT /db_xref="GOA:Q83YJ0" FT /db_xref="InterPro:IPR011335" FT /db_xref="InterPro:IPR015109" FT /db_xref="UniProtKB/TrEMBL:Q83YJ0" FT /protein_id="AAM66788.1" FT /translation="MTATDRSHKTRRMRQPRTQDRPDALRWPDLTSEKRRRAPFLNLLK FT SFYILLGPPQPYSPNGFRTVLSTKGERNLCTVQVGIKPSQIIQPQAPLALSGCSFRPFP FT GLSLVLEIHIAHILDARGIEYEAQAKTENGKKPDFLFPSQAAYEDPAFPEEQLRMLASK FT TSIKDRFRQVADEANRIRDKHLFTLTPGDVTHPKLAQLDELHIHLVMPKVVKESYDDLI FT QGETMTFSRFIEEIQGLQADRPQSLTLL" FT gene 718..1677 FT /gene="repB" FT CDS 718..1677 FT /codon_start=1 FT /transl_table=11 FT /gene="repB" FT /product="RepB" FT /note="similar to Rep protein of Bifidobacterium longum FT pKJ50 encoded by GenBank Accession Number U76614" FT /db_xref="GOA:Q83YJ2" FT /db_xref="InterPro:IPR000525" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q83YJ2" FT /protein_id="AAM66786.1" FT /translation="MSNEIVRYSNQFNAQALRRFTALDLDLLMAIAARVRDKEIDEVTF FT TFEELRRLAHVKKNLTDKELAARIVEVNDRLLACRFRFQDDSRTVQFTLFSGFETDWKT FT RKLLVAVNPRFSFLLNDLTSQFTRFELAEFTALKSSYAKETYRRLKQFRQTGVWKVSLA FT EFRRLLDIPDSYRISHINSRVIKPIEDELKPLMNLKVHRKFAKVAAGRGRSQLVGFEFE FT FDPERVPGGKGAPRVDLSRSVREDTARRSLESVSPHLVEVRGWGEVWWTGDFDVAAARG FT HLDGSLPAERCMACRMDARNVAGHGSASNSLVDVPLFD" FT CDS 1963..2475 FT /codon_start=1 FT /transl_table=11 FT /product="unknown" FT /note="Orf4" FT /db_xref="UniProtKB/TrEMBL:Q83YI9" FT /protein_id="AAM66789.1" FT /translation="MGRPGRAARCAAGTWTVWPTGWRLCWRSGQRRKGPSGLALGRAGA FT VQRPFLIAQTARAVRMTSAAMGCTAGARQTAMTAISQMIGPPRGPFPESRISAPFRWAA FT PRLARQRRPAVAGRSLSTRANGRRSTGTMVSANMESAGWRRANFFPFSRRCATTSSGRW FT PRPVGCP" FT CDS complement(2707..3183) FT /codon_start=1 FT /transl_table=11 FT /product="unknown" FT /note="Orf2" FT /db_xref="UniProtKB/TrEMBL:Q83YJ1" FT /protein_id="AAM66787.1" FT /translation="MVYQLPALPDGVGRRCLVLDGRVHLPVRVVRDLVDVAADAAQLVF FT DLPERLDGGRIMFLLLDVQASLQQLYRFDDGEGYRLVPFPRGGADHRGFLFVHHEMHLD FT GALRAAAFAASFTHYSFSSSIGLRHSGCCFSAVGRGRLRARFMYMNRLACLPSI" XX SQ Sequence 3538 BP; 726 A; 934 C; 1146 G; 732 T; 0 other; ggatcctcgt aggcggcttg cgagggaaac aggaaatcgg gtttctttcc gttttccgtc 60 ttggcctgcg cctcgtattc gatgccgcgc gcgtcgagga tgtgggcgat gtggatttcg 120 aggacaagcg agaggccagg gaacgggcgg aatgagcagc cggacagcgc aagcggggct 180 tgcggctgaa ttatctgact tggttttatg cctacttgga cagtgcacaa atttcgctcc 240 ccttttgtac taagtaccgt ccgaaacccg ttgggagagt agggctgcgg agggcctaaa 300 agaatgtaaa aagattttaa aagatttaaa aagggcgcac ggcgcctttt ttcggacgtt 360 agatcaggcc atcggagggc gtctgggcgg tcctgcgttc ggggttgacg catcctcctt 420 gtcttgtggc ttctgtctgt ggctgtcatt ggcttgggac tgcttggttc tcattggctt 480 tgatggctgg tggtgtttct tccctttcgt tgctgttcca ggcgcgtagc gcccttttat 540 aagaatcttt taatatcttt tagactcccg agaaagcagt tggcagtagg ggaatcgaga 600 cattaaagac aactttttgg gagattaagg acacaaaaag ggaattattg aggacacaaa 660 atgggagatt aaggacacaa aatttattta tgtttctttt tgtggtacgg tggaaccatg 720 tccaacgaga tcgtcagata ttcgaaccag ttcaacgctc aggcattacg ccgcttcacg 780 gcgcttgacc tggatctgct gatggccatc gcggcaaggg tgcgagataa ggaaatcgat 840 gaggtcactt tcactttcga ggaactccgc cggttggctc acgtcaagaa gaacctcacc 900 gacaaggagc tggcggcacg aatcgtcgag gtcaacgacc ggttgctcgc ctgtcggttc 960 cggttccagg atgacagcag gacggtgcag ttcacgctgt tttccggctt cgagaccgat 1020 tggaagacca ggaaactatt ggtcgcggtc aacccgcgct tctcgttcct gctcaacgac 1080 ctcacgtcgc agttcacgcg cttcgaattg gccgagttca cggccttgaa gtccagctac 1140 gcgaaggaga cgtatcgccg tctgaagcag ttcaggcaga cgggagtatg gaaggtcagt 1200 ttggcggaat ttcgccgttt gctcgatatc ccagattcat atcgaatttc gcacataaac 1260 agcagggtta tcaagccgat tgaggatgag ctgaagcctc tgatgaactt aaaagtgcat 1320 cgcaagttcg caaaagtggc cgccggacga ggacgatcac agctggtggg cttcgagttt 1380 gagttcgatc cggagagggt gcccggcggc aagggagctc cgcgcgtgga cctgagccgg 1440 tccgtgcggg aggacacggc cagaagatcg ctggagtccg tctcgccgca cctggtggag 1500 gtcaggggct ggggcgaggt ctggtggacc ggggatttcg acgtggcggc cgcgagaggg 1560 cacctggacg gctccctgcc ggccgagcgg tgcatggcct gccggatgga cgcgcgcaac 1620 gtggcaggcc atggaagcgc gtccaacagc cttgtggatg tgccgttgtt cgactgacgc 1680 tgaacgttgc cccaaacgcg aacacaacac ttagggaggc caccatggaa atccgtcacg 1740 ccgatttgca gatcgaggtc gaggacgccg aggacggcgg cgtgctgcta accatcatcg 1800 attccgcgcg cctgtcgctg tccctgccgc gcaagacggc cgaagacctg ctgtccgcga 1860 tagacgcgtg catgaagacg ggtgagcgcc agaccaccga ttcggtggac gtgtggagga 1920 cggcggacga cctgccgctg ttcggaatgc acgtcggaat cgatggggcg tcctggacgt 1980 gcggcgcggt gcgcagctgg gacgtggacg gtctggccga cgggttggag gctctgctgg 2040 cgtagcgggc agcgacggaa aggcccgtcc gggcttgcgc tcggacgggc cggggccgtt 2100 cagcggccgt ttctcatcgc ccagacggcc agggccgtga ggatgacgtc ggcggcgatg 2160 ggatgcaccg ccggtgcgag gcagacggcg atgaccgcca tcagccagat gatcgggccg 2220 ccgcgcggcc cctttcctga atcgcgcatt tctgcgcctt tccgttgggc cgcgccgcga 2280 ctggcgcggc agcgtcgccc ggctgttgcc ggacggtctc tctcgacccg tgctaatggg 2340 cgtcgatcga caggaacgat ggtatcggct aacatggaga gtgccggttg gaggcgtgct 2400 aacttcttcc cattttcaag gcggtgcgca acgacttctt cggggagatg gccgagaccg 2460 gtggggtgcc cctgaatgca tcccctgtta ggcgttgggc cggtgtcttc gggcaccggc 2520 cctttgcgtt ctctatctcg atgggcataa agaacgtctt agatgatcta ttgagttcta 2580 actactctga tccaccctca tgcgttttcc tatgcgctcg tatggatata tccatggaca 2640 cccacatgga gatgcccatg gacatccaca tggagatgcc catggacatc cacatggaga 2700 tgcccatcaa atcgaaggta agcaagctag acggttcatg tacatgaacc gagcccgcag 2760 cctcccgcgc cctacggcgc tgaagcaaca acccgagtgc cgaaggccga tggaggagga 2820 gaaagaataa tgcgtaaaag aagcagcaaa ggcggcggcg cgcagcgctc catccaagtg 2880 catctcatgg tgaacgaaga ggaagccgcg atgatccgcg ccgccgcgag gaaacggaac 2940 cagacggtat ccctcaccat catcgaagcg gtaaagctgt tggagggaag cctgtacgtc 3000 gaggaggagg aacatgattc gcccaccgtc caggcgctca gggagatcga ataccagctg 3060 cgccgcatcg gccgcaacgt caaccagatc gcgcacaacg cgaacaggga gatgaacgcg 3120 accatcgagg acgaggcatc ggcgtcctac gccgtccggc aatgccggga gctgatagac 3180 catctcgatg ccgtcatcgg gcagtccggg ggagtgcctg atgacgcgaa ccggtcagag 3240 gagggtcagg ctttgcggac ggtccgcttg tagtccttgg atttcttcga tgaaccggga 3300 gaacgtcatg gtttctccct ggatcaggtc gtcataggat tccttgacta ccttgggcat 3360 gaccaggtgg atgtgcagtt catcgagttg ggcgagcttg ggatgggtca cgtcgccggg 3420 agtcagggtg aacaggtgtt tgtccctgat ccggttggct tcgtcggcga cctggcggaa 3480 acgatccttg atggaggttt tcgaggcgag catacgcagc tgttcctcgg ggaacgcc 3538 //