ID AY066026; SV 1; circular; genomic DNA; STD; PRO; 3624 BP. XX AC AY066026; XX DT 04-DEC-2002 (Rel. 74, Created) DT 10-SEP-2007 (Rel. 93, Last updated, Version 4) XX DE Bifidobacterium longum plasmid pB44, complete sequence. XX KW . XX OS Bifidobacterium longum OC Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; OC Bifidobacteriaceae; Bifidobacterium. OG Plasmid pB44 XX RN [1] RP 1-3624 RA Smeianov V.V., Efimov B.A., Korschunov V.M., Steele J.L.; RT "Construction of Escherichia coli-Bifidobacterium shuttle vectors based on RT two distinctive Bifidobacterium replicons, H-78"; RL (in) Unknown A. (Eds.); RL AMERICAN SOCIETY OF MICROBIOLOGY 102ND GENERAL MEETING:0-78; RL American Society of Microbiology (2002) XX RN [2] RP 1-3624 RA Smeianov V.V., Efimov B.A., Korschunov V.M., Steele J.L.; RT ; RL Submitted (10-DEC-2001) to the INSDC. RL Food Science, University of Wisconsin-Madison, 1605 Linden Dr., Madison, WI RL 53706, USA XX FH Key Location/Qualifiers FH FT source 1..3624 FT /organism="Bifidobacterium longum" FT /plasmid="pB44" FT /host="Homo sapiens" FT /strain="VMKB44" FT /mol_type="genomic DNA" FT /note="similar to Bifidobacterium longum plasmid pKJ36 FT sequence deposited with GenBank Accession Number AF139129; FT isolated from intestine" FT /db_xref="taxon:216816" FT gene 708..1607 FT /gene="rep" FT CDS 708..1607 FT /codon_start=1 FT /transl_table=11 FT /gene="rep" FT /product="putative replication protein Rep" FT /note="similar to Bifidobacterium longum plasmid pKJ36 FT replication protein RepB encoded by GenBank Accession FT Number AF139129" FT /db_xref="GOA:Q8GF20" FT /db_xref="InterPro:IPR000525" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q8GF20" FT /protein_id="AAL77220.1" FT /translation="MSNEIVKFSNQFNNVALKKFDAVHLDVLMAIASRVREKGTATVEF FT SFEELRGLMRLRKNLTNKQLADKIVQTNARLLALNYMFEDSGKIIQFALFTKFVTDPQE FT ATLAVGVNEEFAFLLNDLTSQFTRFELAEFADLKSKYAKEFYRRAKQYRSSGIWKISRD FT EFCRLLGVSDSTAKSTANLNRVVLKTIAEECGPLLGLKIERQYVKRRLSGFVFTFARET FT PPVIDARPVEARKTDGDGKGHWTSVAGYGEVFTTTELFDVTAARDHFDGTVEAGECRFC FT AFDARNREHHARNAGRLF" FT gene complement(1604..3304) FT /gene="mob" FT CDS complement(1604..3304) FT /codon_start=1 FT /transl_table=11 FT /gene="mob" FT /product="putative mobilization protein" FT /note="similar to Bifidobacterium longum plasmid pNAC2 Mob FT protein in NP_848160" FT /db_xref="GOA:A7X7J0" FT /db_xref="InterPro:IPR005053" FT /db_xref="UniProtKB/TrEMBL:A7X7J0" FT /protein_id="ABU89875.1" FT /translation="MAIYHLSVSNVSRASGSRATATLSYITGKRVHDERRGETYDYGRK FT ERVLRVGTLLPEGAPAEFADPAVLFNAVELHETGRTARPAKKIVVALPREFTPRQRVQA FT LEEYIRENLNADGYAATYAIHEDREGNNPHAHILVANRQIDPATGGWARLKQRMEYVLD FT ERGERVPLIDPETGRQKTDKRGRRQWKRTSVSLNPLDRKAKLKALRESWAKTCNARLDE FT TARIDHRSLEDQGSDLEPTIHEGYAARAIERAGGVSERCEANREIRRSNGLLTAIRTEL FT GRIFDRLGELFAAKIRQLRQRQARPEPAREPNWRYFEGDARRQLEADRADHTAAIRGKL FT MGAKADVRNREEWWRSHGTEEFEAAKQIIDVARAASREARDANVFKRGRLLRNAEQVAG FT EQSEKLRGAVPWLEDTDIPSDWDQANRFRMRATKAIHDHDMQPRTGLVDELERRLEQAE FT RAEGEKPSPEQVKALALRMAEQRERAAEDPTQDMNRPEPSGDEPLDLSEPEDLGEGGPF FT EERSAPRTKADLLREIRQRADRRTGQQEAEQRQIDPWQAQPPQRRGHGR" XX SQ Sequence 3624 BP; 587 A; 1169 C; 1191 G; 677 T; 0 other; tgcaggagag gcaggcccag ctcaaggccc gcgaggacga cctcaaggcg cggcgcaggg 60 aacgcgaacg caaggcccga accaagcgcc tgatcgaggt cggcgcgatg gccgagtcgg 120 ccgccggctt cgagggaggc gacgagaggg ccaaggaaca catcgcccgc ctcgtgcagc 180 tcggctccct ggtggaagcc atgtgctcca ccgacgtgat ggacaactac acgagccgcg 240 aggacctcag ggccaccgtc gccaaggccc tggaacacaa cgtcaggacc agcgatggca 300 tgaactggaa cctccaggac ctcgtctacg aggcgctgag cgaggaatgg cgcaaaaggg 360 acggcgagga cgacgaccca tgggagaacc acgggccgga cggataccag ccgccctcat 420 acgagccggt caaccccgaa cgcaggaccg cccagacgcc ttccgatggc ctgatctgac 480 gtccgaaaaa aggcgccgtg cgcccttttt aaatctttta aaatcttttt acattctttt 540 aggccctccg cagccctact ctcccaacgg gtttcggacg gtacttagta caaaagggga 600 gcgaacttag tacaaaaggg gagcgaactt agtacaaaag gggagcgaac ttagtacaaa 660 aggggagcga actagtaaat aaataaactt tgtactagta tggagtcatg tccaatgaga 720 tcgtgaagtt cagcaaccag ttcaacaacg tcgcgctgaa gaagttcgac gccgtgcacc 780 tggacgtgct catggcgatc gcctcaaggg tgagggagaa gggcacggcc acggtggagt 840 tctcgttcga ggagctgcgc ggcctcatgc gattgaggaa gaacctgacc aacaagcagc 900 tggcagacaa gatcgtgcag acgaacgcgc gcctgctggc gctgaactac atgttcgagg 960 attcgggcaa gatcatccag ttcgcgctgt tcacgaagtt cgtcaccgac ccgcaggagg 1020 cgactctcgc ggttggggtc aacgaggagt tcgctttcct gctcaacgac ctgaccagcc 1080 agttcacgcg cttcgagctg gccgagttcg ccgacctcaa gagcaagtac gccaaggagt 1140 tctacaggcg cgccaagcag taccgcagct cgggaatctg gaagatcagc cgcgatgagt 1200 tctgccgact gcttggcgta tccgattcca cggcaaaatc caccgccaac ctgaacaggg 1260 tcgtgctgaa gacgatcgcc gaagagtgtg ggcctctcct tggcctgaag atcgagcgcc 1320 agtacgtgaa acgcaggctg tcgggcttcg tgttcacgtt cgcccgcgag acccctccgg 1380 tgatcgacgc caggcccgtg gaggcgagga agacggacgg cgacggcaag ggccattgga 1440 cgagcgtggc ggggtatggc gaggtgttca cgaccacgga gctgttcgac gtgacggccg 1500 cgcgtgacca cttcgacggc accgtggagg ccggggaatg ccgtttctgc gcgtttgacg 1560 cgcgcaaccg cgaacatcat gcgcggaacg ccggaaggtt gttctagcgg ccgtgtccgc 1620 gcctctgggg cggttgcgcc tgccatgggt cgatctgccg ctgttcggcc tcctgctggc 1680 ctgtgcgcct gtctgcgcgc tgcctgatct ccctgagcag gtcggccttg gtcctggggg 1740 cgcttcgctc ctcgaacggg ccgccctccc ccaggtcctc gggctcgctc aggtccaacg 1800 gctcgtcacc ggacggctcg ggtcggttca tgtcctgcgt cgggtcctcc gccgcccgtt 1860 cacgctgttc ggccatgcgc agtgcgaggg ccttcacctg ttcggggctt ggcttctcgc 1920 cctcggcccg ctcggcctgt tcgagccgcc tctccagttc gtccacgagg ccggtcctcg 1980 gctgcatgtc gtggtcgtgg atggccttgg tggccctcat gcggaacctg ttggcctggt 2040 cccagtcgct cgggatgtcg gtgtcttcga gccatggcac cgccccgcgc agcttctcgg 2100 actgctcccc ggccacctgt tcggcgttcc gcagcagcct gccgcgcttg aagacgttcg 2160 cgtccctggc ctcgcgcgag gcggctcgcg ccacgtcgat gatctgcttg gcggcctcaa 2220 actcctcggt gccgtggctc ctccaccact cctcgcggtt cctcacgtcg gccttggctc 2280 ccatgagttt tccacggatc gctgccgtgt ggtcggccct gtcggcttcg agctggcggc 2340 gcgcgtcgcc ctcgaagtag cgccagttcg gctccctggc cggttccggc ctcgcctggc 2400 gttggcgcag ctgcctgatc ttggcggcga acagctcgcc caggcggtcg aatatccggc 2460 cgagttcggt gcggatggcg gtcagcaggc cgttgctgcg cctgatctca cggttggcct 2520 cgcacctctc gctgacgccc ccggcccgtt cgatggccct ggccgcgtag ccctcgtgga 2580 tggtgggttc gaggtcgctg ccctggtcct cgaggctcct gtggtcgatt ctcgcggtct 2640 cgtccagccg cgcgttacag gtcttcgccc aggattcgcg cagggccttg agcttggcct 2700 tccggtcgag cgggttcagg gacacgctcg tgcgcttcca ctgcctgcgg ccccgcttgt 2760 cggtcttctg cctgccggtc tcggggtcga tcagcggcac ccgctctccc cgctcgtcca 2820 gcacgtactc catgcgctgc ttgagtctgg cccagccgcc cgtggccggg tcgatctgcc 2880 ggttggcgac gaggatgtgc gcgtgcggat tgttgccctc cctgtcctcg tggatggcgt 2940 aggtggccgc gtagccgtcc gcgttcaggt tctcgcggat gtactcctcc agcgcctgca 3000 cgcgctgcct gggggtgaac tcgcgcggca gggccaccac gatcttcttg gccggcctcg 3060 ccgtccgtcc ggtctcgtgc agctcgaccg cgttgaacag cacggcgggg tcggcgaact 3120 cggccggcgc gccctccggc agcagggtgc cgacgcgtag cacgcgctcc ttgcgcccgt 3180 agtcgtaggt ctcgccgcgc cgctcgtcat gcacccgctt gccggtgatg tacgagagcg 3240 tggccgtggc cctggaaccg ctcgcgcggc tcacgttgga gacggacaga tggtagatcg 3300 ccatcggctt cggctccttt cgtgatcggc cagggcggcg gggtgcgggg cggcggccct 3360 gcggcaaggg gttcccaggg gtgcggcgag cacccgctgg gcctgccggg aggctccccc 3420 ggaagggtgg gaatccaaag ggcaaggccc gtggcccccg gagggcgcgc ttacggaaaa 3480 tgcaacctcc ggttgcatgt aagtgcgccc taatctttga ttagggattt ccttgctggt 3540 agaatcatat caccatacgg atgatgcaga ccatgtaagg agccgtttcg atggtgaaga 3600 gcctggatga gcagatcaag tccc 3624 //