ID AY004211; SV 1; circular; genomic DNA; STD; PRO; 7610 BP. XX AC AY004211; XX DT 06-SEP-2000 (Rel. 65, Created) DT 06-OCT-2005 (Rel. 85, Last updated, Version 3) XX DE Brevibacterium linens plasmid LIM, complete sequence. XX KW . XX OS Brevibacterium linens OC Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; OC Micrococcineae; Brevibacteriaceae; Brevibacterium. OG Plasmid LIM XX RN [1] RP 1-7610 RX DOI; 10.1016/S0147-619X(02)00147-6. RX PUBMED; 12726769. RA Moore M., Svenson C., Bowling D., Glenn D.; RT "Complete nucleotide sequence of a native plasmid from Brevibacterium RT linens"; RL Plasmid 49(2):160-168(2003). XX RN [2] RP 1-7610 RA Moore M.W., Glenn D., Bowling D.; RT ; RL Submitted (04-JUL-2000) to the INSDC. RL Biotechnology, University of New South Wales, Kensington, Sydney, NSW 2052, RL Australia XX FH Key Location/Qualifiers FH FT source 1..7610 FT /organism="Brevibacterium linens" FT /plasmid="LIM" FT /mol_type="genomic DNA" FT /db_xref="taxon:1703" FT gene complement(3052..3591) FT /gene="orfIII" FT CDS complement(3052..3591) FT /codon_start=1 FT /transl_table=11 FT /gene="orfIII" FT /product="ORF III" FT /function="involved in plasmid replication (non-essential)" FT /note="similar to region of pBLA8 and pBRL1 deposited in FT GenBank Accession Numbers Y11902 and U39878" FT /db_xref="InterPro:IPR021104" FT /db_xref="UniProtKB/TrEMBL:Q9F4V7" FT /protein_id="AAF89087.1" FT /translation="MTDDQSPEARAEAAARDLADTGRTVTARAIREAAKVRMAVASAAA FT KAWNDAASEDDHETIPPVPDDVASRLTVIWADAYRAALAAVTPERDQLRVDVDALRVEV FT EGLTADVETVEAERDTAAAQVEDLKQELAAAQAETEKWSTEAAKHEAALSAVRDQHDKL FT NERITTLLETQAKREN" FT rep_origin complement(3951..3956) FT gene 4034..4996 FT /gene="repA" FT CDS 4034..4996 FT /codon_start=1 FT /transl_table=11 FT /gene="repA" FT /product="RepA" FT /note="replication protein" FT /db_xref="InterPro:IPR004322" FT /db_xref="InterPro:IPR014820" FT /db_xref="UniProtKB/TrEMBL:Q9F4V6" FT /protein_id="AAF89085.1" FT /translation="MSTASTETWGQMWLPLWPLASDDLLQGIYRTSRHNALELRYIEAN FT PQSLSNLLVIDIDHPDALMRAMWNRKAWQPNAIVENPANGHAHAVWALAEPVTRTEYAR FT RKPLAYAAAVTEGLRRSVDGDKGYSGLMTKNPTHEQWEASWLTDHLYNLNELTEHLTVA FT DFMPPDSWQRTKRKNPVGLGRNCTLFETVRWDVYRVARTIRKRNEHPTPEDQHDLEAAI FT ASLCQGMNATFSEALPATEIAATIRSFYKWITTRYTGWLDSRTTSKKNPPPTTATPADK FT AVSLVAVRVASPAESLAAVTNSRECRLRFKRQGLDDNDG" FT gene 4980..5183 FT /gene="repB" FT CDS 4980..5183 FT /codon_start=1 FT /transl_table=11 FT /gene="repB" FT /product="RepB" FT /note="replication protein" FT /db_xref="GOA:Q9F4V5" FT /db_xref="InterPro:IPR010982" FT /db_xref="UniProtKB/TrEMBL:Q9F4V5" FT /protein_id="AAF89086.1" FT /translation="MTMTAEHRHPRNGMSVRELAAKVGVSEKSIVRWTSEPREVYLSRA FT QQRRVRIRELRETGLSNACDRR" XX SQ Sequence 7610 BP; 1571 A; 2349 C; 2133 G; 1555 T; 2 other; ggtcgaagcg gattccaaga ccacccttgg cctcggccat gccacgttca aggccgtctg 60 gcccctggaa cattcccgag tcgtccgagg gctcggtcgt ggtcgcgttg gcgggctgtc 120 cggcgaacat agcgagcgtg agtgccagca cgacggtgag aacaccaatc gagggcctcg 180 ccattgggtg cgaagtgctc gtgtacataa tgcccctact ttggagatac agtactttcc 240 ctgctgcttt cagcattgtg ccttgatccg gagcctgtca agtggtggtg ctgggcagag 300 gtgaagaacg ggcaacgctc gcccgtctcg atcactttca tcgatatttg ccacgccact 360 gtgatcacct gctctcactg tttgttccgg catcatctgc atctctgaca cgagatcaca 420 cgccacccat gaacccgacc acacggacac ctcgccagct ctcacacctt ttgcattaat 480 cccagaatgc gcaaaaattg agccaaattg gctcttcatg gcgattggtc atgataggtt 540 tctacgacag gtgatgctgt acatataact gtcactagca aaggagctat acgatgtctc 600 atttaggatc tagaactaca ccgcttgcgt tgtttgttgc tctattgatg gtcgtgacat 660 taatagtggc ggcaacgccg actcgcgctc aagccaagcc cgtcaccgaa gatgaggcga 720 tccagactct acttgatcaa ccagagtcgg ctgaaattgc cgctgagatg ggtatgagcg 780 ctgaggccat ggctgaggtt gcaatccaag acctcggcat cgaagcgaca ctggacattg 840 cagaacatct aagtagtgga aacgttgacg gttaaggcta actttgattc sgtaaagtct 900 cagtcagcgg acaagactac tgtcctcgat cctcagaaga cctgcgcgaa gtccactgcg 960 gctcaaaatt gtgttcggcg cttttggaac cgctatttgt ggcgcagcag cagcttgcta 1020 gcgttggtgc tctcggattg ccctgtgaga cattgttgct gattggtaca tcatcgcttg 1080 actggggcca ggtctgctga ttccggcaag tactcgctca ctgaaggaaa gatcatgcct 1140 ggagctttca aacgcttytt cacagagaag cctgaatcaa aactggacta tttgctcgtc 1200 tggatttcga tatcggttgt gccgtttgta gtcataccga tagtcggtgc cgtaaaaggc 1260 gacgttggac agacaatggt cgacaattgg gcgatgttca tcgttgtccc gatggcggca 1320 gcagccgtgc tgtttggtgc tgagcgagct caaaagaagc gttagccgtc cgaacaagga 1380 ggggactgtg caggcgccgg tggcagtgtc accaaacgct gcatcagtcc cctctctgga 1440 gatagcgcgt ggtacttagc ttgacaccct cacttagctc gaacgacaga ccccgttcac 1500 cgaactcaat aacctcttag aacgtcggat ctcaatccca tcaggccttc tttcgaccat 1560 ttccatcgtc gtatccgcca cggacactta ccccaacgca ggccacccca cgtgcaccga 1620 acgttcacac tcattcagcc aaaaacccgg ccccatggac accccaccag ctatcacacc 1680 tcttgcatta ctgacgacgt gcagattgcg cagccgcaat cgtctgcgca acgtactcct 1740 cacgagtgat gtctccacgc accttggctg ttagccgagc cacgtcttcc cggttgggga 1800 cccacccctc atgccagctc gccgccaacg cctccaccac gttccgacgc tgctgatcat 1860 ccaaaccctc gaacacatcc ggccaccttg actcgatatc aaaacggtca ctcatcatca 1920 ttccatctcc cccatcacca gcacagtgca acgccaggca gagccactta tcccgggata 1980 aatgtatagc tcgctccgca cttcaacacc gccggccccg gcagactggt cccattgcac 2040 gaaccacaca ctcacgtttc acaccagcca ttgcgcactt cattccgcac agcgataccg 2100 ggtccggggc ttgccccgtg cacatcgatc accggatcga aatgcaagtg gcaaccactt 2160 gctatgcttg ctccccttca cagcagacgc gcttcgtatc ctcacctctc acattgagac 2220 cgcacctcca ccggtcattg gtggatgttg cggacgagga ggaacaccct cgacaccgag 2280 ctcacgtgtt gcttcgtcgt gggttttcag ccactccggt tcctcgcctt caccttcatc 2340 aagacccact gggccccggt cgtcatgagc ggcgtcaagg acgctcgacc accactcgtc 2400 ttcgtccgcg taatctaggt cttgccacac ccgtgcggtg cttgctgtat cgagtttcac 2460 cctcaaggtg gcgatgtctt cgtagagttc atatgtgaac tcactggcct caccgacact 2520 caacgggact cttcggccag tcttggccaa cccggagaac gggcgtcgcc actcgtcttt 2580 ctcgcgctgt cgaacatagc gtttgagctt ctccagctca tcttcgtcgc cactaacgac 2640 cggttgattc gtggtccagt tgaacggctt catcatctgc gagtcgagca cagccatgtc 2700 tcgctcgaac ttaaggtgtt cagctttggc ccggtaatag ttccgagagc gacgcagcga 2760 ttcaagctct atgactgcgt cttctggcac tgcacggccc gtgcgagctc gttgccgata 2820 cgctgcctgt ttgcacttgg ccgagcagta tttttgtccc tcaccccggg tctcgaacga 2880 ggtctcgcag accttacaag tggtcatttc gcgctcctcc caggcatccg ccacaccctt 2940 gcctgtcacg ttaccgaccc acggaaatgt ccccgtatgc accttggtgc cagaggtgtg 3000 cttgattcgt agtcatttct cgccggtttt ctttcgctgc cggctacggg gttagttctc 3060 gcgtttggcc tgtgtctcga ggagggtggt gatgcgttcg ttgagtttgt cgtgctggtc 3120 tcggactgcg ctcagtgcgg cttcatgctt ggctgcttct gttgaccatt tctcggtctc 3180 agcctgggcc gcggcgagtt cctgcttgag gtcttcgact tgggcggccg cggtgtcgcg 3240 ttcggcctcg acggtctcga cgtcggcggt cagcccctcg acctcgacgc ggagtgcgtc 3300 gacatcgacg cgcagctggt cacgctcggg agtcacggcc gcgagggcgg cccggtaggc 3360 gtcggcccag atcacggtga gccgactagc tacatcgtcg ggcacaggag ggatggtctc 3420 gtggtcatcc tcactcgctg cgtcgttcca ggccttcgcg gccgccgagg ccacggccat 3480 gcgcaccttc gcggcctcgc ggatcgcgcg ggcggtcacg gtcctgcccg tgtcggcgag 3540 gtcgcgggca gctgcttcgg cgcgagcttc gggggactgg tcatcggtca tggtgaaaac 3600 tccttcaatt agtaataggt aactcctgtt acctgttact atgttacctc atttcaacgt 3660 caccggcaaa cacgactggc aacatctgaa cgccccgact cagccacccg cagaccgtga 3720 gctaacgccc acggtctgcg cataaacgag tagcgctggt ctcgtggttg ggttatctgg 3780 tggggcgacc gtttctgcgt gccagccggt gtgctgccct gcgtgtggca acgtcgcaca 3840 cggggcagag aggttccagt gtggccggag tgagggaccg ctgtagcgtc ccagcaaccg 3900 ccgtagcgga cctcgcttcg ctcggacaga aaggcgcttc tgccagaacc atctgatatt 3960 gctcttcaga ccaagtttga acacaccgcg tgaagtccaa cgctgaacgg cactcatgtg 4020 tgagtgtggg ggcatgagca cagcgagtac agagacgtgg ggccagatgt ggttgcctct 4080 gtggccactg gcctctgacg acctgctcca gggcatctat cgcaccagcc gccataacgc 4140 cctggagctg cgctacatcg aggccaatcc acaatccttg tcgaatctcc tcgtcatcga 4200 cattgaccac cccgacgcgc tcatgcgcgc catgtggaac cggaaagcct ggcaacccaa 4260 tgccatcgtc gaaaaccctg ccaacggcca cgcccacgcc gtgtgggcac tcgcggagcc 4320 tgtcacccgc accgagtacg ccagacgcaa accactcgcc tacgcggctg ccgtgaccga 4380 ggggctgcgc cggtccgtcg atggcgacaa gggctattcc gggctgatga cgaaaaaccc 4440 cacccacgag cagtgggaag cctcctggct gaccgatcac ctctacaacc tcaacgagct 4500 caccgagcac ctgaccgtcg ccgacttcat gccgccagac tcctggcaac gcactaaacg 4560 caaaaaccca gtgggactcg gccgtaactg caccctcttc gagaccgtcc ggtgggacgt 4620 gtaccgggtc gcgcgcacca ttcggaagcg caacgaacac cccacgccag aggaccaaca 4680 cgacctcgaa gcagcgatcg ccagtctgtg ccagggaatg aatgccacgt tcagcgaggc 4740 actacccgcc accgagatcg cagccaccat tcgcagcttc tacaagtgga tcaccacccg 4800 ctacaccggg tggctcgact cccgcaccac cagcaagaaa aatccgccgc ctaccaccgc 4860 aacaccggcc gacaaggcgg tctcattggt ggccgtaagg gtggcatcgc cagcggaatc 4920 gctcgccgcg gtgacaaatt cgagagagtg caggctgcga ttcaagaggc agggactcga 4980 tgacaatgac ggctgaacat agacaccctc gcaatgggat gagtgtgcgc gagcttgccg 5040 cgaaggtcgg ggtgagcgag aagagcatcg tccgttggac ctcggagccg cgtgaggttt 5100 atctaagccg tgcgcaacag cggcgtgtgc ggattcgtga gctgcgcgaa acgggcctgt 5160 cgaatgcgtg cgatcgccgc tgaggtcgag tgctccgttg gcaccgtcca caacgcgctc 5220 aaagaccagc ccgaggacga gcaatgagca cctacggaca gaagaaaaag gcgtgggcca 5280 gcgagtgggc aaagatgcgg aaagagtacc tgtcccggga agctcatgga cgttctcgtc 5340 cttcccatcg acggcggacc cttctgtccg gtgggagtgc ccggcctgcg gcgagacggg 5400 cactcccgtc gcctcggaga agctggcact cacagctggt cgtgggcaca tgaacgtcca 5460 cgttacgccc gaggatatcc aggcactcga ggacatgaag gtgctgcgga tgccgcccga 5520 actgctctcg ccatttcagc ggcgtcgacg cgacgagctc gaaacccgcg accaatgacc 5580 gcaacaggat caccgcgacc gtcctggagc gtgcaacagg ctgcgcgtga gtgtggggtc 5640 tctccggcca cgatccgccg ccgtctcaag gacgggtctc tgcccaacgc cgtccagggt 5700 gcccgagggg cttggacgat tccggtcact gacctcatcg cggccggtct caaccctggt 5760 caaccctctc cacctgacca tggtcaaggg gtagtcaccg accttactca cgccgaggat 5820 gaccatggtc atgactatgg tcaaagatca tcgtcgcagg tgaaagccct ccacgacctt 5880 gagcaaaagt tactcactga acaacgtgag gttgagcatt tgcgtaccca agtgagtacc 5940 atgcagaaca accttgatga cctccgtaca gccatgcgaa tgctcgaggc cggacctcgt 6000 gaccggactg accggtcaga ttcagacgtg accggacacg tcgaccacaa cggtatgacc 6060 gtggaggagc ctgaccggtc agagtcggcg gccggcggtt cgttcttgcg ccggctattt 6120 cgcagaacca cgtgatcgaa agacacatga ttgaagacca gatggctcag ttctatgaac 6180 gccgagggac ctaccctgag tgccaggcgg gctggtaccc gatcattctg gacctcgata 6240 acaagattgg cagcatcgaa ccgggataca gagtcgatca ggtcaaggag aagttcgggg 6300 gtctacggtt ctactacgac cagatgagcg tcaatgacga caaccgagaa cgtgtggaca 6360 aactcgtcga tgcagccgaa gcgaaggcct acacgacctg cgaggtatgt ggcgtctctg 6420 actcgactgt tactacgagc ggaccttact ggttgaagac tctctgcaca gaacacagag 6480 agaaacgaac gagaagttga catagcaaca gcccatcacc aaaaaaggtg acgggctgtt 6540 gctaatcagg tcgttgtgaa aacgcactag ccgtgtgcgg tgcgtttctc tgtcctgtat 6600 ctcaagacgc cgtcgatggc aaggatgacg accccgccga cgaggatgat aacgggtacg 6660 gcagcgccca tgggactgtt catcccgagc agccatccga gcagggcgat gggtatcagc 6720 acgagcgcct tgagcccaaa cttcttgagg tgctgattct tgagatcgcc catcgtctgg 6780 gattcctccc ggtcgagagt catacgcact tcatctcctt gatcgcgtca ccactcgggg 6840 tgccggtgat gcgaagcgat ttaccgctct tgcagattcc gttgcttccg atgaagtcgg 6900 cgaccgatac accgagcgcg ccggcaatga atttggcgac cttcccggca gggagcgctg 6960 ccaggattcc gatctttctg gttcagaaat tcctggcggc gtcgctccga ctactgccgg 7020 gctgcgcgcg ggctcgcagg aacgttcctt acgatggtcg tccttgtcat gggtggaccg 7080 cgctcgtgtg taccacgcgt attcgacgat tcccgttatg agcgccgtgt tgaagatcca 7140 agtcaggacc agtgtcaggt cgatctgctt gtgcgtgagt acggctgctg cggccccgat 7200 cagaaaggtg gtggccgcag cagcaagcac gagaatgaag tgtctcatct cttagccgca 7260 gaccttgtcc caagggacga aggaggagac accactgccg gcggctccgc acatgaatcc 7320 gccgacgcct ccagtagcga tcccgaaggg aacgcacacc atgccgtccc acaggatcgt 7380 ccaaccccag ctgatagcgg aggcctttgg gcagccctgc gcggagacga caggtgtgcc 7440 atccgcattg gctgcctcag cagtgaggac gtcgtcatca taagtgaaga tagcgtgctc 7500 tgagccttcg actttcgggc tatcgaaccg cacgagctct gtcccatcgg cggcgataac 7560 ggtcgcgagt tgcttattgt cggagatttc aatctcgtcg cccggctgca 7610 //