ID AM886278; SV 1; circular; genomic DNA; STD; PRO; 7499 BP. XX AC AM886278; XX DT 15-JAN-2008 (Rel. 94, Created) DT 18-SEP-2008 (Rel. 97, Last updated, Version 2) XX DE Chlamydia trachomatis pL2 plasmid XX KW virulence plasmid helicase; virulence plasmid integrase pGP7-D; KW virulence plasmid integrase pGP8-D. XX OS Chlamydia trachomatis OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; OC Chlamydia/Chlamydophila group; Chlamydia. OG Plasmid pL2 XX RN [1] RP 1-7499 RA Thomson N.R.; RT ; RL Submitted (19-SEP-2007) to the INSDC. RL Thomson N.R., Pathogen Sequencing Unit, The Wellcome Trust Sanger RL Institute, Genome Campus, Hinxton, Cambridge, CB10 1SA, UNITED KINGDOM. XX RN [2] RX DOI; 10.1101/gr.7020108. RX PUBMED; 18032721. RA Thomson N.R., Holden M.T., Carder C., Lennard N., Lockey S.J., Marsh P., RA Skipp P., O'Connor C.D., Goodhead I., Norbertzcak H., Harris B., Ormond D., RA Rance R., Quail M.A., Parkhill J., Stephens R.S., Clarke I.N.; RT "Chlamydia trachomatis: genome sequence analysis of lymphogranuloma RT venereum isolates"; RL Genome Res. 18(1):161-171(2008). XX DR GR; AM886278_GR. XX FH Key Location/Qualifiers FH FT source 1..7499 FT /organism="Chlamydia trachomatis" FT /plasmid="pL2" FT /strain="L2/434/Bu" FT /mol_type="genomic DNA" FT /serovar="L2" FT /db_xref="taxon:813" FT CDS complement(<1..393) FT /transl_table=11 FT /locus_tag="pL2-07" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:B0BCL9" FT /protein_id="CAP09057.1" FT /translation="MHTLVFCSFKGGTGKTTLSLNVGCNLAQFLGKKVLLADLDPQSNL FT SSGLGASVRSNQKGLHDIVYTSNDLKSIICETKKDSVDLIPASFLSEQFRELDIHRGPS FT NNLKLFLNEYCAPFYDICIIDTPPSLG" FT CDS complement(421..729) FT /transl_table=11 FT /locus_tag="pL2-06" FT /product="hypothetical protein" FT /db_xref="UniProtKB/Swiss-Prot:B0BCM0" FT /protein_id="CAP09058.1" FT /translation="MQNKSKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLEL FT YHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE" FT CDS complement(799..1593) FT /transl_table=11 FT /locus_tag="pL2-05" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR008444" FT /db_xref="UniProtKB/Swiss-Prot:B0BCM1" FT /protein_id="CAP09059.1" FT /translation="MGNSGFYLYNTQNCVFADNIKVGQMTEPLKDQQIILGTTSTPVAA FT KMTASDGISLTVSNNPSTNASITIGLDAEKAYQLILEKLGDQILGGIADTIVDSTVQDI FT LDKITTDPSLGLLKAFNNFPITNKIQCNGLFTPRNIETLLGGTEIGKFTVTPKSSGSMF FT LVSADIIASRMEGGVVLALVREGDSKPYAISYGYSSGVPNLCSLRTRIINTGLTPTTYS FT LRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA" FT CDS complement(1655..2719) FT /transl_table=11 FT /locus_tag="pL2-04" FT /product="hypothetical protein" FT /db_xref="UniProtKB/Swiss-Prot:B0BCM2" FT /protein_id="CAP09060.1" FT /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVIG FT LDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLEAY FT GVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTLSPI FT IRIYEGWEGLTDEENIDIDLTPFNSPSTRKHKGFVVEPCPILVDQIESYFVIKPANVYQ FT EIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLFLNVNVKSLAYILRMNRY FT ICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERFEEITKK FT SKEQMEQLEQESIN" FT CDS complement(2713..4068) FT /transl_table=11 FT /locus_tag="pL2-03" FT /product="virulence plasmid helicase" FT /db_xref="GOA:B0BCM3" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR007693" FT /db_xref="InterPro:IPR007694" FT /db_xref="UniProtKB/Swiss-Prot:B0BCM3" FT /protein_id="CAP09061.1" FT /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCSH FT HKNIFIVFKYLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVSHT FT VFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSIRSA FT RGRSIYDIFSQSEIGVLARIKKRRATFSENQNSFFDAFPTGYKDIDDKGVILAKGNFVI FT IAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGEKLQRG FT DLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFIDYLQLI FT NSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSDLRDSGQI FT EQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKVW" FT misc_feature complement(3373..3396) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT repeat_region 3513..3520 FT CDS 4167..5159 FT /transl_table=11 FT /locus_tag="pL2-02" FT /product="virulence plasmid integrase pGP8-D" FT /db_xref="GOA:B0BCM4" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/Swiss-Prot:B0BCM4" FT /protein_id="CAP09062.1" FT /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEVI FT MHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKTSW FT TEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSLQTA FT SFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQTEKRI FT IITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKITPHVL FT RATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI" FT repeat_region 4673..4680 FT repeat_region 5267..5274 FT /rpt_unit_seq="(AC)4" FT repeat_region 5377..5385 FT CDS complement(5344..6126) FT /transl_table=11 FT /locus_tag="pL2-01" FT /product="virulence plasmid integrase pGP7-D" FT /db_xref="GOA:B0BCM5" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/Swiss-Prot:B0BCM5" FT /protein_id="CAP09063.1" FT /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSHLTRKNYASGINFLVSLE FT ILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLTKG FT YIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQGIR FT KLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNGRVFV FT SKIGIPVTTSQVAHNFRLAEFYSAMKKKLLLEYFVQAL" FT repeat_region 5704..5711 FT rep_origin complement(6203..6290) FT /note="putative origin of replication" FT repeat_region complement(6203..6224) FT /note="22bp direct repeat, 1 of 4 repeats" FT repeat_region complement(6225..6246) FT /note="22bp direct repeat, 2 of 4 repeats" FT repeat_region complement(6247..6268) FT /note="22bp direct repeat, 3 of 4 repeats" FT repeat_region complement(6269..6290) FT /note="22bp direct repeat, 4 of 4 repeats" FT repeat_region 6291..6298 FT /rpt_unit_seq="(TC)4" FT misc_feature complement(6314..6343) FT /note="AT rich region" FT repeat_region 6317..6328 FT /rpt_unit_seq="(AT)6" FT repeat_region 6334..6343 FT /rpt_unit_seq="(AT)5" FT CDS complement(6358..7101) FT /transl_table=11 FT /locus_tag="pL2-08" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR005350" FT /db_xref="UniProtKB/TrEMBL:B0BCM6" FT /protein_id="CAP09064.1" FT /translation="MNKLKKEANVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQSL FT DQLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDHFS FT STTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKGDLK FT TKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEILRIM FT CSGVSLSSYNENLLQQLFELFKQKS" FT repeat_region 7058..7065 FT CDS complement(7098..>7499) FT /transl_table=11 FT /locus_tag="pL2-07" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:B0BCM7" FT /protein_id="CAP09065.1" FT /translation="GLTKEAFVAGDKLIACLTPEPFSILGLQKIREFLSSVGKPEEEHI FT LGIALSFWDDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSR FT AAEDILKLTHEIANILHIEYERDYSQRTT" XX SQ Sequence 7499 BP; 2328 A; 1433 C; 1284 G; 2454 T; 0 other; tcctaggcta ggtggagtgt ctattatgca gatgtcataa aaaggagcgc agtactcatt 60 cagaaataac tttaagttgt tactaggtcc tctatgaata tccaattctc taaactgttc 120 ggataaaaat gatgcaggaa ttaggtccac actatctttt tttgtttcgc aaatgattga 180 ttttaaatcg tttgatgtgt atactatgtc gtgtaagcct ttttggttac ttctgacact 240 agcccccaat ccagaagata aattggattg cgggtctagg tcagcaagta acactttttt 300 ccctaaaaat tgggccaagt tgcatcccac gtttagagaa agtgttgttt ttccagttcc 360 tcccttaaaa gagcaaaaaa ctaaggtgtg caaatcaact ccaacgttag agtaagttat 420 ctattcagcc ttggaaaaca tgtcttttct agacaagata agcataatca aagccttttt 480 tagctttaaa ctgttatcct ctaatttttc aagaacagga gagtctggga ataatcctaa 540 agagttttct atttgttgaa gcagtcctag aattagtgag acacttttat ggtagagttc 600 taagggagaa tttaagaaag ttactttttc cttgtttact cgtattttta ggtctaattc 660 ggggaaatct tttttcacat ctttaacaat tttaataaaa tcgtccctca ctttgctttt 720 attttgcata acaaaccccg taattcgaac ttttttctct aaatataaaa cctataagaa 780 aaatccaata aaaattgttt aagcgtttgt ttgaggtatt acctccaaaa aagatacatt 840 agaagtattt gttattccta aaatatcatt gccattagaa agggcattaa cccataccac 900 accgctttct aaaccgccta cacgtaatga atacgttgtc ggagtcaatc ctgtattaat 960 aattctggtt cttagactac ataaattagg aacgcctgat gagtatccat aactaatcgc 1020 gtagggctta gaatcacctt ctcgtaccaa agctagaaca acgccgcctt ccattcttga 1080 tgcaataata tctgctgaga ctaagaacat gctcccagag cttttgggtg tgactgtgaa 1140 ttttcctatt tcagttcctc ctaataaagt ttcaatgttc ctgggagtga ataacccgtt 1200 gcattgaatt ttattagtga ttggaaagtt gttaaaagct ttcaacaaac ctagagaagg 1260 gtctgttgtg attttgtcta aaatatcttg gactgtacta tcaacaatag tatcagcaat 1320 tccaccaaga atttgatctc ccaacttttc tagaataagc tggtaagctt tttccgcatc 1380 caaaccaatt gtaatagaag cattggttga tggattattg gagactgtta aagatattcc 1440 atcagaagct gtcattttgg ctgcgacagg tgttgatgtt gtcccaagga ttatttgctg 1500 gtccttgagc ggctctgtca tttgcccaac tttgatatta tcagcaaaga cgcagttttg 1560 agtgttatac aaataaaaac cagaatttcc cattttaaaa ctctttttta ttttgagctt 1620 taaataaatt aggtttttag tttcaagttt gctattaatt aatagattct tgttctaatt 1680 gttccatttg ttctttagat ttcttagtta tttcttcaaa acgctcttta tttagatata 1740 gaatttcttt tttagagagt ttagaagaat ccagaaattc aatgcgtttt cttctagata 1800 accaaccaag ctgaatggcg atttctatac atttatcgat agctaactcg atttttttcc 1860 agttccttgt acaaatgtac cgattcatcc ttaaaatata tgcaagactt ttaacgttaa 1920 cgtttaagaa caagttttct ggccaagaat tatccttagt taattttcgt ctctttttcg 1980 cagctgctgt aatcacccag tcgataaatg tgtaagcata ctttgatgca tttgggaagc 2040 gcatttttat ttcttggtat acatttgcag gcttgattac aaagtaggat tctatttgat 2100 ctaccaagat aggacatggc tctacaacga accctttatg tttccgtgta gatggtgaat 2160 taaaaggtgt taagtctata tctatatttt cttcgtcagt taaaccttcc catccttcgt 2220 aaatcctaat gatcggagaa agagtttggt aacggtctac tatttgtgtt ccattagtcc 2280 atcgagttct agttgccact attaaaaacg gttgatgtcc taaatggtat aaggcttcta 2340 aagcagtttc agcttctttt ccactaaact catacttatt tctggatgtt ttataccgct 2400 taactccata agcctctaag aattcagttt ttgtaaaacg gattcttggt atccatcctt 2460 caaattgaaa actatttgat tctctggata aaacaacccc ttttgtgttc cccttgtaat 2520 tcgttgcagt cagcaatctt tggatagctg ctaatgcatg gtaatgagat gaaagaaaat 2580 caagacctat aacttctacc atcccatttt gagccaattt gggagatatc ttaatagatt 2640 gaccaggtct tcttccaaac ttctgatttt caaggtggat aggacttttg atgaagtggc 2700 agttactata atttaccata cttttttaat agcggagaat ttactaattt ttggatcgaa 2760 atgtaatacc gaagagaaaa ccgatccatg tctatttttc ccaacagtta tctcacaatt 2820 agaagacgat tccttcctat tgataaacaa aatcacatct gcgtcttgct ctatttgacc 2880 gctgtctcgc aaatctgaaa gcatgggaac tttatttgct ctatcctcaa cttttctaga 2940 tagttgggat aaacaaacta taggaatgtt tagctctgag gctaaacctc ttaaggttct 3000 agatatatct gctatttcat tttgacgatt ttctccaacc gatgagttga tcaactgcaa 3060 gtaatcgata aatattacgt ctactcgatc ttcttttctc agcaaccgga tctgattcgc 3120 gattaaatta agcttatact gactatcact gcagatataa aaatgtgatt ctctaactgt 3180 ttctccagct tcttctactc ggaataattc ttctttagag agatcccctc tttgtaattt 3240 ttcaccagat attcctgtta aattagcaat aatccgctca acaatttgac ctgcgctcat 3300 ttctagagat aggaaaccaa ctctacgctg ttgagtaacc gcaagattta tcgccatgtc 3360 tatagctaaa gcagttttcc ctatagatgg cctagctgct ataatcacga aattaccttt 3420 agctaagata actcctttat catcaatatc cttgtatcct gttgggaagg catcaaagaa 3480 agaattttga ttctcagaga acgttgctcg tctttttttt atacgagcca gcactccaat 3540 ttctgactgt gagaatatat cataaataga ccggcctcta gcgctgcgaa tagaaaaagt 3600 ctttgctata gcactgtcaa gccttccctt tatacgctca agcaatagaa acggagatct 3660 acgcaatgga ttttcattgt actcattaaa cgagcggaaa atgaaattac tcaaattttc 3720 ttcagcgcta cacacgctca aatcatcgag gaaaaccgta tgagaaacgg atctaagctt 3780 gtcatttgat aaagcatcat gcaacattaa cccgagatac gatttgtcca tatctttgat 3840 acgacgccgc aaaagctctt cccaagccga gtctacagtt ataggtaatc cattgtcttt 3900 taagtattta aatactatga atatgttttt atgatgagaa cacttaaact cataattagc 3960 aagctgcctc agaatatact cagtagagtc ttcaaatatc agagctttac ctaacaacgc 4020 atactcgata tcttgcatgc gattttctat ttcggaacga gttttcatgt ttatataaaa 4080 aaataccgag cgtgctatcc tgttaacaac ctgattattt cactaatcag gacattttac 4140 ggataggtta tatcacgagg gatttcatgg gtaaagggat tttatctttg cagcaagaaa 4200 tgtcgttaga atatagcgaa aagtcttatc aggaagtttt aaaaattcgc caagaatcct 4260 attggaaacg catgaaaagc ttctccttat tcgaagttat tatgcattgg accgcatcac 4320 tcaacaaaca tacttgtaga tcatatcgag gatctttttt gtctttagaa aagattggtc 4380 tattgtcctt ggatatgaat ctgcaagagt tttccctttt aaatcataat ctaattctag 4440 atgcgattaa aaaagtttcc tctgccaaga cttcttggac cgaaggtact aaacaagttc 4500 gagcagcaag ctatatttcc ttaacaagat tcctaaacag gatgactcaa ggaatagtcg 4560 ctatagcgca accttctaaa caagaaaata gtcgaacatt ttttaaaacc agggaaatag 4620 taaaaacaga tgcgatgaac agtttgcaaa cagcgtcctt cctaaaagag ctaaaaaaaa 4680 tcaatgcccg ggattggttg atcgcccaga caatgctcca aggaggtaaa cgctcctctg 4740 aagtcttaag cttggagatt agtcagattt gtttccaaca agctaccatt tctttctccc 4800 agcttaagaa ccgtcagaca gaaaagagga ttattataac ttatcctcag aagtttatgc 4860 actttctaca agagtacatc ggtcaacgaa gaggttttgt cttcgtaact cgctccggaa 4920 aaatggtggg gttaaggcaa atcgcccgca cgttctctca agcaggacta caagctgcaa 4980 tcccttttaa gataaccccg cacgtgcttc gagcaaccgc tgtgacggag tacaaacgcc 5040 tagggtgctc agactccgac ataatgaagg tcacaggaca cgcaaccgca aagatgatat 5100 ttgcgtacga taaatcttct cgagaagaca acgcttcaaa gaagatggct ctaatatagc 5160 ctaaaagtgt tttttctggc aacagaatat gaatataatt ttaattatat cacaatattg 5220 ggggtgtttg tactagagga cttacctctt ccccagaaca ataagaacac acactttgtc 5280 tcgatgaaag acaggaaata cgcatgattt cctcatcttt taatcctatt tgctttaaat 5340 gaatcaaagc gcttgcacga agtactctag gagtaatttt tttttcatag cactatagaa 5400 ctctgcaagc ctaaaattat gcgcaacctg acttgttgtt acaggaatcc ctattttaga 5460 aacaaatact ctcccatttc tcccacaagt gtatttttgc aactcctcca ttaagctgat 5520 aggaaatgtg attagaattt tggtttcttt attctgtctt tttttaatgc gaaaggaaat 5580 ctgattggat gcaaaaaata gatcgtctgt gcgcaaagac aaaatttcgt ctaacttacg 5640 gatcccttgt acaatcaatt taccgattaa atagtctcta taattcacta tccggagcgc 5700 ttcaaaaaaa actgtccatt cctgcttaga aatcgattct gttttgattt tgtctcggat 5760 tttaaaaaat gtagtgtttc caaaatcttt caatggaata gcgggtttaa tatatccctt 5820 ggtcaatcta tacaaaaact ttgtgaaaga tatgtagcat gccgctctag cctgtttaga 5880 ggcctctgaa acgacttttc cattaaaaac atctagagac ttgattttaa acaaagattc 5940 gctgtggtca agagaaatag cctttatcaa ggtttccgat aaatccagaa tctctaaaga 6000 aacaagaaag ttaatcccag acgcataatt ttttctagtt agatgagata aagtagataa 6060 ccaaatttcc gacgcgtccc caaaagttaa gaacaaccta cttttatgga aagccatcga 6120 gcccattttc ttaaccaaag ctattcaaaa tcggagctct aagattttaa gaaatttttc 6180 aacaaaagtc cattatgacc aagtctacca ccaagagttg caaagtctac caccaagagt 6240 tgcaaagtct accaccaaga gttgcaaagt ctaccaccaa gagttgcaaa tctctctcgt 6300 aaaatcaaat ccctaaatat atatatataa tagatatata tatgagctga cggaggatca 6360 gctcttttgc ttaaaaagtt caaaaagctg ttgtagaaga ttttcgttat aggaggacaa 6420 agaaactccg gaacacatga tgcgaagtat ctctattaag aaatcagata attggcgatt 6480 cttctctgaa tcagacttat ctatcgtttc tctaacgtct ttgtttctag atgaaggaag 6540 aaattgatcc aacaccctta tcgccgatga gttcgacatt ccacatactt tccctatcac 6600 atcgaccttg gtttttaaat cgccttttct agcggccaaa atatatgcgg atttataggg 6660 gatcgattga aactcttttt gtagagtttg gttggggagg tttataaaaa gctcgtaata 6720 tgcaagagca ttgtaagcag aagacttagt tctaaaaact aactctatcc aagatgaaaa 6780 agttgttgag gagaagtgat ccttactcag gatttttcta gcattataga ttttttctcc 6840 taaaagaagt acgtgttgct tctgtatgga ttttatctga ccagtaagca gttttaccgc 6900 taggatgtct tcttgataaa attcttcatc cgaatagttt tgggactctg ataaaaataa 6960 ttgatccaaa ctctgacttt cctcagaatt caaagttgct gagaatagtt caatggaagg 7020 aagcgtcttc ttaaaatcta aagaagcggc agtttgattt tttttaaaaa agacattcgc 7080 ttcttttttt agtttgttca cgttgtcctc tgagagtaat ctcgttcata ttcgatatgc 7140 aaaatatttg ctatttcatg cgttaacttc agaatatctt ctgcggccct agaatttgga 7200 tagacattag ctacagaatc ttctttaaga agagaacggc tgagagaaat atctcgacga 7260 atttttgttg aaaaaagctt gtttttgtaa atagactcga taatgtctat atacatttgg 7320 ttagtcgagt tacgatcatc ccaaaaagac aaagctattc caagaatgtg ttcttcttca 7380 ggttttccga ccgaacttaa gaattcacgt atcttttgta accctagaat agaaaaaggt 7440 tctggagtta aacaagcaat taatttgtct cctgcaacaa aagcttcttt cgttaaccc 7499 //