ID AJ620208; SV 1; circular; genomic DNA; STD; VRL; 7296 BP. XX AC AJ620208; XX DT 12-JAN-2004 (Rel. 78, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Bovine papillomavirus type 6 complete genome XX KW E1 gene; E2 gene; E4 gene; E7 gene; E8 gene; L1 gene; L2 gene. XX OS Bovine papillomavirus type 6 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Xipapillomavirus. XX RN [1] RP 1-7296 RA de Villiers E.M.; RT ; RL Submitted (02-JAN-2004) to the INSDC. RL de Villiers E.M., Div. Characterization of Tumorviruses, Deutsches RL Krebsforschungszentrum, Im Neuenheimer Feld 242, Heidelberg, 69120, RL GERMANY. XX RN [2] RA Delius H.; RT "Sequencing of the complete genomes of BPV 3, BPV 5 and BPV 6"; RL Unpublished. XX RN [3] RX DOI; 10.1016/0042-6822(85)90398-8. RX PUBMED; 2998027. RA Coggins L., Ma J., Slater A., Campo M.; RT "Sequence homologies between bovine papillomavirus genomes mapped by a RT novel low-stringency heteroduplex method"; RL Virology 143(2):603-611(1985). XX RN [4] RX DOI; 10.1002/mc.2940040510. RX PUBMED; 1654923. RA Jackson M., Pennie W., McCaffery R., Smith K., Grindlay G., Campo M.; RT "The B subgroup bovine papillomaviruses lack an identifiable E6 open RT reading frame"; RL Mol. Carcinog. 4(5):382-387(1991). XX FH Key Location/Qualifiers FH FT source 1..7296 FT /organism="Bovine papillomavirus type 6" FT /host="Bos taurus" FT /mol_type="genomic DNA" FT /db_xref="taxon:10563" FT CDS 234..467 FT /gene="E8" FT /product="E8 protein" FT /db_xref="UniProtKB/Swiss-Prot:Q705F6" FT /protein_id="CAF05685.1" FT /translation="MCCINYYSIEYGCTVSGAYKKQTKLVSAWSLGSIIMRLTLIFWLL FT LLWCGFHLAALCIAIILFLLLLSAIDELNGWD" FT CDS 656..955 FT /gene="E7" FT /product="E7 protein" FT /db_xref="GOA:Q705F5" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/Swiss-Prot:Q705F5" FT /protein_id="CAF05686.1" FT /translation="MKGQSMILKDLAAELEEVVSPINLDCEEEIETEEVDCPAPFAVEA FT VCHVCEQVLRLAVVASPDGILQLQQLLLTDSLSFLCTSCSREAFCNRRPQRNGS" FT CDS 945..2774 FT /gene="E1" FT /product="E1 protein" FT /db_xref="GOA:Q705F4" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/Swiss-Prot:Q705F4" FT /protein_id="CAF05687.1" FT /translation="MDPNEKGIEVLSFIDEQAECSGSDSEEGYEESQSDLSDLIDNTEC FT EQGNSAELFAQQEALAVQEHIRASKRKLKLSFRNPLQCITSHSNRTPSRAAPKRRKLDD FT SGYNEDILGEVAQVDENGGSEGYGSLGSQNVSGRVQVCNVNAANKENDLCGSFLRAGSR FT RATQLAIFKDKFNISFNSLTRPFKNDKTCCNNWVGAMFGARDELLEASKMLLQRHCDYL FT MLLMHTCKLGFMALYLLEFKHAKSRETIRHLFQQILQIEKEEMFLEPPKLKSLPAATFW FT WKISHSASAYIYGELPDWIARQTSLSHQRQDDQPFDLSQMVQWAYDHNYTDEPTIAYNY FT ARMASEDSNAAAFLRCNSQVKFVKECAQMTKYYKTAEMREMSMGKWIKRALDEISGTGD FT WKDIINFLKYQGINFLSFLASFKDLLHGIPKRNCLVIVGPPNTGKSMFVMSLMKALKGR FT VLSFVNSKSHFWLQPLNAAKIAVLDDATKATWSYIDTYLRNGLDGTPVSLDMKHRAPIQ FT ICFPPLLITTNVQVMKDPLYMYLHSRLMCFEFPNPFPLNEAGQPALILNELSWKSFFAR FT LWRQLDLSDAEDAEDGEPPSPFRCCARSADRHL" FT CDS 2698..4005 FT /gene="E2" FT /product="E2 protein" FT /db_xref="GOA:Q705F3" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/Swiss-Prot:Q705F3" FT /protein_id="CAF05688.1" FT /translation="MQRTPRMENLQARFDAVQDQLIDIYEKDTRSLEVQVTYWNLIRRE FT QALFYYARQQGITRLGLYQVPLTSVSERKAKEAIKMSMYLTSLQKSPFAQLSWSLSETS FT PEMFFAPPESTFKKKGSHVTVVYDKDSNNAMEYAVWGEVFYVDETDTWHKAQSKVDYDG FT VYYTDAEGKKVYYVHFADDAAHYSVLGQWEVHFENNVLSPPVTSSFPGGPGRRQRPQTG FT SYSPGHKAPVTSRRRHSSSSDSHSSRRGSRPQSLSRSRSRSRSRSRSPSGSHARQRAPQ FT DSGTNKSPGRQGGRRGDGGGGRGGGGGGVRVREDTFGGQPTQIAGRLGDRPAKAPEQTS FT RRLAQLIESANDPPVLLLQGCANTLKCFRRRTSHAHPHKFLCMSTSWTWSCKTTTHKSC FT HRMLVAFSDYEQRRCFLAGVKLPKGVTCVKGSLEAL" FT CDS 3179..3739 FT /gene="E4" FT /product="E4 protein" FT /db_xref="UniProtKB/TrEMBL:Q705F2" FT /protein_id="CAF05689.1" FT /translation="MMAFTIQMQREKKCTMCTLQTMPHTTLCWDNGKCILKTTFFLLLL FT PVRFLVGPDGGNGPKPGATPLDTKPPSHPEDDTPPRRTRTPADGGRGRSRSRGPDRGRD FT HGRGRHRGRTPDNERRRTPEPTNPPVDKEDEEETEEEVEEEEEEGYEYEKIPLEDSLRK FT LLDAWETDLQKLRNKLHDDLLSL" FT CDS 4022..5611 FT /gene="L2" FT /product="L2 protein" FT /db_xref="GOA:Q705F1" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:Q705F1" FT /protein_id="CAF05690.1" FT /translation="MVRASRQKRASEDDLYRGCRAGQDCPIDIRNKYEHNTLADRILKW FT VSSFLYFGTLGISSGKGTGGPTGYTPLGSGGGGGGGVRGGKGANVARPTVLVDALRPPG FT VPVDTVSPDSSLVPLLEGSGGSTTLDVPPGGDIEVIAEVHPPPNTGDPEITVDLTDDPP FT ILEVTPETHPTSRVRSTISKHDNPAFTAYVSSTQLPGESAVKDNVYVFHGFNGEFVGQA FT DPGGEAIFEEIPLEDFGVPDSPPSTSTPRTSSFTRVLNKFQRRLYNRKLVQQVKITDRT FT FLTKPSKLVAWEFDNPAFDDESVSLVFQQDVNEVTAAPLAEFQDIVTLTRPIFSQREGL FT VRVSRLGQRGTIRTRSGLRIGGHVHFYTDISPIRTLEDIEMTTFGEVSGDSVIMQPLGE FT STFVDEGHISDTLDEGFVQYAETALEDEYNEDFTHARLEISTSAKSRTSIITVQDGIPP FT GSVKLFINDAAATVDPYMPTPNTVPNVPPHTPFTPLDPALPDIIVNLEENTATFFLHPS FT LLRKHRHKHWFF" FT CDS 5623..7140 FT /gene="L1" FT /product="L1 protein" FT /db_xref="GOA:Q705F0" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:Q705F0" FT /protein_id="CAF05691.1" FT /translation="MSYWLPSSGKLFLPPPTPVSNILNTDDFVTRTDTFYHASSERLLN FT VGHPYFELKKGEEVIVPKVSGSQFRVFRLQLPDPNKFTFQTPNVYNPETQRLVWALKGI FT EICRGQPLGIGVTGHPSFNKFRDAENLNNNQPSQGEDDRVNTALDPKQVQLFIVGCTPC FT EGEHWDVAESCQPLEIGACPPLQLVNTLIQDGEMCDIGFGNINNKALQATKSDAPLDIV FT DQIVKYPDFLKMSSDLQGNSMFFYAKREQLYLRHLWARGGTVGEEIPPNGSPSPYYLPG FT KVKPLPSSVYFGGPSGSLVSSDQQIFNRPFWIQRAQGNNNGVCWHNQLFVTAVDSTRGT FT NFTISVPKKNMGVQPQDLYKSTDFNHYLRHVEEWELSCIMQLCIVDLKPETLAHLHNMD FT PRILETWNLGFIQPPTNIEDQYRFIKSLATKCPGKEETAEKEDPYAKYKFWDVNLTERF FT SSNLEQYSLGRKFLFQIGKRGSKRPAPKTVTFDSSSKKAPKRRRKNA" XX SQ Sequence 7296 BP; 2153 A; 1495 C; 1679 G; 1969 T; 0 other; aaactgtgca cctggtgtgc acctggctgc tttctaacac ggaaactatg tcggcacacc 60 ctaatatttc ttttttgaag ttttattggc tctaaaacat aattgcattg ccaacttggc 120 tataaaagtt acttagaagc agcggctggc gtaccgccca gacaagcaca gacaaaacat 180 accggattcg gtgcaccgct ctcacgctta gtaagtcatt attattaaca actatgtgtt 240 gtataaatta ttacagtatc gaatacggtt gcaccgtttc aggtgcatat aaaaagcaga 300 caaagctagt ttctgcgtgg agcttaggtt ccatcatcat gcgcttaact ctgatttttt 360 ggttgttgtt gctctggtgt gggtttcact tggctgctct ctgcatagcc attattcttt 420 ttttgctttt actatctgct attgatgaac taaatggatg ggactgaatg cacactgttt 480 gtattactat tgatattggt ttgtgatgct ttttgtttaa atgtgcatga tttgttagag 540 ggtttgctgt tgctttctgt attagttggt gacgaggact agtttaggtg tggacattta 600 agagcaatct tgacctgtgt aattaaaaaa ggcgcttaag tgtacgtgca gaaaaatgaa 660 gggccagagc atgattttga aagacttagc tgcagaatta gaagaggtag tcagtccaat 720 taacttggac tgtgaggagg agattgaaac tgaggaagtt gactgtcctg caccttttgc 780 tgttgaagct gtgtgtcatg tttgtgaaca agttttgcgt ttagccgtcg ttgcctcgcc 840 agacgggata ctgcaattgc agcaactcct gctgacggac tccctgtcgt ttctgtgtac 900 aagctgctct agagaagcgt tctgtaaccg cagaccacaa cgcaatggat cctaatgaaa 960 aaggtattga agtgctgagt tttatagatg aacaagcaga atgtagtggg tcagatagcg 1020 aggaagggta tgaagaaagc cagtctgatc tgtctgacct aattgataat actgaatgtg 1080 agcaagggaa ttctgcagaa ttgtttgcac aacaagaggc tttggccgtc caagagcaca 1140 ttcgcgcctc aaaacgaaag ctaaaactgt cattccgtaa ccctttacaa tgcataacga 1200 gtcatagtaa cagaactccc agtagagccg cgccaaaacg gagaaaacta gacgacagtg 1260 gctataatga agatattctt ggagaagtgg ctcaggtaga cgagaatggt ggatctgagg 1320 gttacgggag cttaggttct caaaacgtat ctgggcgggt gcaagtttgc aatgtcaatg 1380 ctgcaaataa ggaaaatgat ttgtgtgggt ctttcttaag agccggtagt aggcgagcaa 1440 cacaattggc catctttaaa gacaaattca atattagttt taacagtctg acaagacctt 1500 ttaaaaatga taagacatgt tgcaacaatt gggtgggagc gatgtttgga gccagagatg 1560 aattgcttga ggcttcaaaa atgcttttac aaagacattg tgattatctg atgttgttaa 1620 tgcatacttg taaactagga tttatggcat tgtatttgtt agaatttaag catgcaaaaa 1680 gtagagaaac cataaggcat ttatttcagc agattttgca aattgaaaaa gaggaaatgt 1740 ttttagagcc acctaaactg aaaagtttgc ctgctgcaac attttggtgg aaaataagcc 1800 atagtgccag tgcatatatt tatggtgagt tgcctgattg gatagctagg caaacatcgc 1860 tgtcccatca aagacaagat gaccaaccgt ttgacctttc acaaatggta caatgggctt 1920 atgatcataa ttatacagat gaacctacta ttgcttataa ttatgctaga atggcatcag 1980 aagattcgaa tgcagctgct tttttgcgtt gcaatagcca ggtaaaattt gtaaaggagt 2040 gtgcacagat gactaagtat tacaaaactg ctgaaatgag agaaatgtct atgggaaagt 2100 ggataaaaag ggcattagat gaaataagtg gcacaggaga ctggaaagac attattaatt 2160 ttttaaaata tcagggcatt aactttttgt cttttttagc ctcatttaaa gatttgttgc 2220 atggcatacc taaaaggaat tgcttagtaa tagttggacc tcctaataca gggaaatcaa 2280 tgtttgtgat gagtttaatg aaggctttga aaggacgtgt gttatccttc gtcaattcca 2340 aaagccattt ttggcttcaa cctttaaatg ctgcaaaaat agcagtgcta gatgatgcaa 2400 ccaaagctac atggtcttat attgacacgt acttgagaaa tggcctagat gggacacctg 2460 tgtccttaga catgaagcat agagctccta tacaaatttg tttcccaccc ttgctcatta 2520 caactaatgt acaagtgatg aaggaccctt tatatatgta tttgcacagt aggttaatgt 2580 gctttgaatt ccccaatcct ttccctttaa atgaagctgg gcaacctgct ttgattttaa 2640 atgaacttag ctggaaatct ttttttgcaa ggctttggag acagctagat ctcagtgatg 2700 cagaggacgc cgaggatgga gaacctccaa gcccgtttcg atgctgtgca agatcagctg 2760 atagacattt atgagaaaga cacccggtct ctagaagtgc aagtcactta ctggaacttg 2820 ataagaagag agcaggcctt gttttattat gctagacaac aaggcattac aaggctagga 2880 ctgtatcaag tgcctttgac tagtgtgtct gaaagaaagg caaaagaggc catcaagatg 2940 tctatgtact taacgagttt gcagaagtcc ccttttgcac aattgtcatg gtcattgtca 3000 gaaacaagcc ctgaaatgtt ttttgcgcct cctgaaagca cttttaaaaa aaagggatcg 3060 catgtgactg ttgtatatga taaggattct aataatgcaa tggaatacgc tgtatggggg 3120 gaagtgtttt atgtagatga gacggacact tggcataaag cacaaagtaa ggtagactat 3180 gatggcgttt actatacaga tgcagaggga aaaaaagtgt actatgtgca ctttgcagac 3240 gatgccgcac actactctgt gctgggacaa tgggaagtgc attttgaaaa caacgttctt 3300 tctcctcctg ttaccagttc gtttcctggt gggcccggac ggcggcaacg gccccaaacc 3360 gggagctact cccctggaca caaagccccc gtcacatcca gaagacgaca ctcctcctcg 3420 tcggactcgc actccagcag acgggggtcg cggccgcagt cgctctcgcg gtcccgatcg 3480 cggtcgcgat cacggtcgag gtcgccatcg gggtcgcacg ccagacaacg agcgccgcag 3540 gactccggaa ccaacaaatc ccccggtaga caaggaggac gaagaggaga cggaggagga 3600 ggtagaggag gaggaggagg aggggtacga gtacgagaag atacctttgg aggacagcct 3660 acgcaaattg ctggacgctt gggagaccga cctgcaaaag ctccggaaca aacttcacga 3720 cgacttgctc agcttataga gagtgccaac gaccctcctg tgcttctgtt gcaaggttgc 3780 gctaacactt tgaaatgctt taggcgacgc acttcccatg cccatcccca caagtttctg 3840 tgcatgagca caagctggac ttggtcttgt aaaacgacca ctcataaatc ttgccataga 3900 atgctcgttg catttagtga ctatgaacag agacggtgtt tccttgcagg tgtaaagctc 3960 cctaaaggtg taacgtgcgt taaagggtcc ttagaagctt tatgacagct gctcattaaa 4020 catggtccgt gcatcaagac aaaagcgtgc ctctgaggat gatttgtata gggggtgcag 4080 agctgggcaa gactgcccca ttgacataag aaacaaatat gagcacaaca cactagctga 4140 cagaatttta aaatgggtca gctctttttt atactttggt acacttggca ttagcagtgg 4200 taaaggcact ggaggcccta caggttacac acctttaggc tccgggggtg gaggcggggg 4260 cggcgttaga ggcgggaaag gggcaaacgt tgccagacct acagtgctag tcgatgcatt 4320 gcgaccacca ggcgttccag ttgacacagt gtccccagat tccagcttag tgcctttgct 4380 agaaggtagc ggaggaagta caactcttga tgtgcctcca ggaggggaca ttgaagtaat 4440 tgcagaagtg catccccctc caaatacagg ggaccctgaa atcactgtgg accttactga 4500 cgaccctcca atcttagaag ttaccccaga aacacaccca acatctaggg tccgcagtac 4560 tatcagtaaa catgacaatc ctgcctttac agcatatgtg tcaagcacac aactgccagg 4620 tgaaagtgca gttaaagaca atgtctatgt gtttcatggc tttaatggcg aatttgtagg 4680 gcaagctgat cctggagggg aagcaatttt tgaagaaatt cctctagaag attttggtgt 4740 ccctgacagc ccccccagta caagtacacc tcgtacctct tcctttacaa gggtactaaa 4800 taagtttcaa aggaggctgt acaatagaaa actagtccag caggtaaaaa tcacagacag 4860 aacttttttg accaagccct ccaaacttgt agcttgggaa tttgacaatc cagcctttga 4920 tgatgagtct gtgtcattag tatttcagca agatgtgaat gaagtaactg ctgcaccgct 4980 tgcagaattt caagatattg tcactttaac caggcccata ttttcacaaa gagaaggctt 5040 agtcagggtg agccgtttgg gacagcgcgg caccattcga acacgtagtg gcttgcgaat 5100 tggtggacac gtgcactttt acactgacat tagtcccatt aggactctag aagacattga 5160 aatgaccact tttggtgagg tgtcaggaga ctcagtcatt atgcagccac taggtgaaag 5220 tacatttgtt gatgaaggcc acatctcaga caccttagac gaggggtttg tgcagtatgc 5280 agaaactgct ttagaagatg agtacaatga agattttacc catgcacggc tagaaatttc 5340 cacctctgca aagagccgca ccagcataat aacagttcaa gatggaatac ctccagggtc 5400 tgtaaagctg ttcataaatg atgcagctgc aacagttgac ccttatatgc ccactcccaa 5460 cactgtgccc aacgtcccac cgcacacacc ttttactcca ttagatcctg cactgcctga 5520 catcatagta aacttggagg aaaatacagc tacattcttt ttgcacccca gcctgttacg 5580 aaaacacaga cataaacact ggttctttta atctcttcac agatgtcata ctggctacca 5640 agttcaggaa agctgtttct gccaccacct acacctgttt caaacatact aaacacggat 5700 gactttgtca ctcgcactga caccttttat cacgcaagca gtgaacgtct gctcaatgtg 5760 ggccatccat attttgagct caaaaaagga gaggaagtca ttgtgcccaa ggtttctggc 5820 agtcaattca gggtgttcag acttcaatta ccagatccaa acaaatttac tttccaaaca 5880 ccaaatgtgt acaatcctga aactcagcgc cttgtttggg ccttaaaagg cattgaaatc 5940 tgcaggggac agccattggg aataggtgtt actggccacc cttctttcaa caaatttaga 6000 gatgcagaaa acttaaataa caatcagcca tctcaaggag aagatgatag ggttaataca 6060 gcactagatc caaagcaagt tcagcttttc attgttggtt gcaccccctg tgaaggtgaa 6120 cactgggatg tagctgaatc atgccaacca ttagaaattg gggcatgccc tccattacag 6180 ctagtcaaca ctcttattca agatggagaa atgtgtgaca ttggatttgg aaatatcaat 6240 aataaagctc tacaggccac taaatctgat gcacccctag atattgttga ccaaatagtt 6300 aaatatccag actttttgaa aatgagcagt gatcttcaag gcaattctat gtttttctat 6360 gccaaacgtg agcaattgta cttaaggcat ttgtgggcaa ggggtggaac tgtaggggaa 6420 gaaattcctc caaatggaag tcctagccca tattacttac ctgggaaggt aaagccttta 6480 ccatcctctg tgtattttgg aggacctagt ggatctttag tgtccagtga ccagcaaatc 6540 tttaataggc cattttggat tcaaagggct cagggcaata ataatggggt gtgctggcat 6600 aatcagctct ttgtgaccgc tgtggacagc actagaggca cgaattttac aatttctgtc 6660 ccgaaaaaga acatgggagt gcaacctcag gacctgtaca aatctactga ttttaaccac 6720 tacttaagac atgttgagga gtgggaacta tcatgtataa tgcagctttg cattgtagat 6780 ttaaaaccag aaaccttagc acatctgcac aacatggatc cacgtatatt agagacctgg 6840 aacttgggat tcattcagcc cccaactaat atagaagatc agtacaggtt tattaagtct 6900 ttagccacta aatgccctgg taaagaggaa actgcagaaa aagaagaccc atatgctaaa 6960 tataaattct gggatgttaa cctaacagaa aggttttctt ctaatttgga acagtattct 7020 ttggggcgca aatttttgtt tcaaataggt aaaagaggta gcaaacggcc tgcaccgaaa 7080 acggtcacct ttgatagcag tagcaaaaaa gcgccaaagc gtaggcggaa aaatgcataa 7140 ctgccaagtg tgaatgagca acatgtaaat gtttttctgc acacacctat aattcttttt 7200 gtgcaagact ttgtgaatct tccaaataaa atgttgcggt tatacaccct ccttatctcc 7260 tttgattttt ttccagccct tctcccagtg tttgca 7296 //