ID AJ620207; SV 1; linear; genomic DNA; STD; VRL; 7275 BP. XX AC AJ620207; XX DT 12-JAN-2004 (Rel. 78, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Bovine papillomavirus type 3 complete genome XX KW E1 gene; E2 gene; E4 gene; E7 gene; E8 gene; L1 gene; L2 gene. XX OS Bovine papillomavirus 3 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Xipapillomavirus. XX RN [1] RP 1-7275 RA de Villiers E.M.; RT ; RL Submitted (02-JAN-2004) to the INSDC. RL de Villiers E.M., Div. Characterization of Tumorviruses, Deutsches RL Krebsforschungszentrum, Im Neuenheimer Feld 242, Heidelberg, 69120, RL GERMANY. XX RN [2] RA Delius H.; RT "Sequencing of the complete genomes of BPV 3, BPV 5 and BPV 6"; RL Unpublished. XX RN [3] RX DOI; 10.1016/0042-6822(85)90398-8. RX PUBMED; 2998027. RA Coggins L., Ma J., Slater A., Campo M.; RT "Sequence homologies between bovine papillomavirus genomes mapped by a RT novel low-stringency heteroduplex method"; RL Virology 143(2):603-611(1985). XX RN [4] RX DOI; 10.1002/mc.2940040510. RX PUBMED; 1654923. RA Jackson M., Pennie W., McCaffery R., Smith K., Grindlay G., Campo M.; RT "The B subgroup bovine papillomaviruses lack an identifiable E6 open RT reading frame"; RL Mol. Carcinog. 4(5):382-387(1991). XX FH Key Location/Qualifiers FH FT source 1..7275 FT /organism="Bovine papillomavirus 3" FT /mol_type="genomic DNA" FT /db_xref="taxon:10561" FT CDS 292..519 FT /gene="E8" FT /product="E8 protein" FT /db_xref="UniProtKB/Swiss-Prot:Q8BDD9" FT /protein_id="CAF05677.1" FT /translation="MLLLAPDSVAPFEVHIKGCSSLSLHGPLGSICIMSLTLIYWLLLL FT WVSFHFLSLCLAIILYLLLMSTITSLHGWD" FT CDS 742..1038 FT /gene="E7" FT /product="E7 protein" FT /db_xref="GOA:Q8BDD8" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/Swiss-Prot:Q8BDD8" FT /protein_id="CAF05678.1" FT /translation="MKGQDVTLKNVAVELEDVVSPIILDCEEEIETEEVDCPAPYAVEA FT VCYVCENPLRLALVSSPDGIHQLHQLLLDCISLLCANCSREVYSNRRPQRNGP" FT CDS 1028..2869 FT /gene="E1" FT /product="E1 protein" FT /db_xref="GOA:Q8BDD7" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/Swiss-Prot:Q8BDD7" FT /protein_id="CAF05679.1" FT /translation="MDPNLKGITGQSFLDDQAECSESDNSEQGCEESLSDLSDLIDNAE FT CEQGNSAELFAQQEAFAFQEHIRTTKRKLKLSFRNPLQCITSQSNRSPGRAAPKRRVLD FT DSGYNEDILAEVAQVDENGGSEGYGSLASQSLSGQSQKNGKNRVNNGNKENIDCTRLLA FT ASSHRAVQLAIFKEKFGISLNSLTRIFKNDKTCCSNWVGVVFGAREELLAASQTILQRV FT CDSIMLLTHTCKLGFMGLYLLEFKNAKSRDTVRHLFQQILQVENNDMLLEPPKIKSLPA FT ATFWWKLRHSSAAFLFGNLPDWIARQTSITHQIQEDQPFDLSAMVQWAYDHNFVDEAQI FT AYYYARLASEDSNAAAFLRCNNQVKHVKECAQMTRYYKTAEMREMSMSKWIKKCLNEIE FT GTGDWKQIINFIKYQNINFLSFLACFRDLLHSVPKRNCLVIVGPPNTGKSMFVMSLMRT FT LKGRVLSFVNSKSHFWLQPLNAAKIAILDDATRPTWSYIDTYLRNGLDGTPVSLDMKHR FT APMQICFPPLIITTNVDVAKDPTFVYLHSRLMSFEFANAFPLDENGKPALILNELSWKS FT FFERLWNQLDLTEPEDEDDGDPPSPFRCSARAAARDL" FT CDS 2811..4055 FT /gene="E2" FT /product="E2 protein" FT /db_xref="GOA:Q8BDD6" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/Swiss-Prot:Q8BDD6" FT /protein_id="CAF05680.1" FT /translation="METLQARFDAVQEQLLEIYEQDTSSLDVQITYWTLIRHEQALYYY FT ARRQGILRLGIYQVPPTGVSEKKAKDAIKMTLFLKSLQKSEFAAQPWSLPETSLERFLA FT APENTFKKRGQHVTVIYDKDSMNAMEYTLWTEIYAVDDNDQWHKYTSGVDYDGIYFTDA FT QGNKNYYVSFADDAALYSKLGHWEVQYENQVLSPPVTSSLPPGPNRRRGPQTRGHPRHK FT SASFRRSASSGSDTRDSRGRSRSPSSSRSRSRSRSRSPSGSHSRPRAPHVPDQETGRPP FT GGGGRRGSRDQQQGPGGPAPPSPGEVGTRSGPPETKAKGRLAELISAAYDPPVLLLQGC FT ANTLKSFRRRTTQSYPHTFLCMSTSWTWASKTCTVKSGHRMLVAFVNSEQRTLFLATVK FT IPKGVTCLKGSFDGL" FT CDS 3334..3789 FT /gene="E4" FT /product="E4 protein" FT /db_xref="UniProtKB/TrEMBL:Q8BDD5" FT /protein_id="CAF05681.1" FT /translation="MMQPCTLNWDIGKCNMKTKFFLLLLPARFLLGPTEDGGPKPGDTP FT DTRAPPSADLPHLGPIPETPGDGRGRPRLRDPDHGHGHDRRRGRTPDHERRTYPTRRPG FT DHPEEEDEEEAETNNRALEDQLRHLLEKWERDLDRLRRKLKEDLLSL" FT CDS 4068..5624 FT /gene="L2" FT /product="L2 protein" FT /db_xref="GOA:Q705F9" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/Swiss-Prot:Q705F9" FT /protein_id="CAF05682.1" FT /translation="MVRAARRKRASEDDLSRGCRAGQDCPIDIKNKYEQNTLADRILKW FT VSSFLYFGTLGISSGKGTGGATGYTPIGGGGVRGGKGANVVRPTVLVDALGPTGVPIDP FT VTPDEALVPLLESSGGSTTLDVPPGGEIEVIAEVHPPPAAGDPEITIGHPEEPPILEVI FT PETHPTTRVRTTVSKHDNPAFTAYVASAQLPGETSASDNVFILHGFNGEYVGPAQTGED FT TVFEEIELENFGVPESPPSSSTPNTSFRNILNKFQRRLYNRRLVQQVKITDRTFLTKPS FT KLVSWEFDNPTYTDDSLSLIFQQDVDEVSAAPMAEFQDIVTLSRPVVYEREGLVRVSRL FT GQRGTIRTRSGLRIGGHVHYYTDISPIRPVEDIEMRTLGEVSGDSVIMQPLAESTFVDS FT GDVLNEGNIEFPDSTLEDDYNEDFSRARLEITTSARSRTSIVTVQEGIPPGSVKLFIND FT AETIVTPHGPESNDTDRYQPFIPVTPAATPDIIITFEEGTATFFLHPSLLKRHKHKHWF FT F" FT CDS 5624..7168 FT /gene="L1" FT /product="L1 protein" FT /note="first ATG" FT /db_xref="GOA:P50805" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/Swiss-Prot:P50805" FT /protein_id="CAF05683.1" FT /translation="MFLQMSFWLPSQGKLYLPPPTAVTQYLDTDDFVTRTDTFYHTNTE FT RLLFVGHPYFDIKREDKVLVPKVSGSQFRVFRLKFPDPNKFSFPDPNVYNSDNQRLVWA FT LRGIEICRGQPLGIGVTGHPSFNKFKDAENNNNKTPDQTTDDRVNMAVDPKQVQMFIVG FT CTPCDGEHWDVAQACDRLEPGACPPIELKNTIIEDGEMCDTGFGNMNFQKLQASKSGAP FT LDIVNQIVKYPDFLKMGSDPHGNSMFFYAKREQMYVRHLWSRGGTIGEEIPPNGEASPY FT YLPGAGRATLPTSVYFGSPSGSLVSSDQQIYNRPFWIQRAQGRNNGICWNNQLFVTAVD FT STRGTNFTISVHRDKPSLEDQDTYTAAEFKHYLRHVEEWEVSLVLQLCIVDLTPEALAH FT INGMDPRIIESWNLGFIHAPNNIEDQYRYLQSIATRCPPKEDAAATEDPYAKYTFWDVD FT LTERFSMNLDQYSLGRKFLFQIGKKSRGIKRSAPKAVTFESSSRSKKAPKRRRKNV" FT CDS 5636..7168 FT /gene="L1" FT /product="L1a protein" FT /note="alternative" FT /db_xref="GOA:P50805" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/Swiss-Prot:P50805" FT /protein_id="CAF05684.1" FT /translation="MSFWLPSQGKLYLPPPTAVTQYLDTDDFVTRTDTFYHTNTERLLF FT VGHPYFDIKREDKVLVPKVSGSQFRVFRLKFPDPNKFSFPDPNVYNSDNQRLVWALRGI FT EICRGQPLGIGVTGHPSFNKFKDAENNNNKTPDQTTDDRVNMAVDPKQVQMFIVGCTPC FT DGEHWDVAQACDRLEPGACPPIELKNTIIEDGEMCDTGFGNMNFQKLQASKSGAPLDIV FT NQIVKYPDFLKMGSDPHGNSMFFYAKREQMYVRHLWSRGGTIGEEIPPNGEASPYYLPG FT AGRATLPTSVYFGSPSGSLVSSDQQIYNRPFWIQRAQGRNNGICWNNQLFVTAVDSTRG FT TNFTISVHRDKPSLEDQDTYTAAEFKHYLRHVEEWEVSLVLQLCIVDLTPEALAHINGM FT DPRIIESWNLGFIHAPNNIEDQYRYLQSIATRCPPKEDAAATEDPYAKYTFWDVDLTER FT FSMNLDQYSLGRKFLFQIGKKSRGIKRSAPKAVTFESSSRSKKAPKRRRKNV" XX SQ Sequence 7275 BP; 2199 A; 1469 C; 1668 G; 1939 T; 0 other; tcttatcttc cttgtgattt gttaccccct cccaaatatt cgtgcaaagc ggtgcacctg 60 gttgaacacc tgcatgctta ataaacctta aagtatgcag aggcacacct aagtaaacac 120 ctttaaggtt attggctcca aaaaagctgc aagctgccaa gccaagctat aaaaaagtac 180 tcaaaagcac atactggcag tacgcccggg caagcttagg caaactgtac cgtttgcggt 240 gcagtttctc acacaaaggt aagtgttgtt attaacaaca gtctctttaa tatgttatta 300 cttgcacccg attcggtcgc accgtttgag gtacatataa aaggctgcag ctcactttca 360 ctacatggac ctttgggctc catctgcatt atgagcttga ctctaattta ctggttattg 420 ctgctctggg tttcatttca ctttctgtca ttgtgccttg ctattatatt gtatttgctg 480 ttaatgtcta ctattactag tttacatgga tgggattgaa gctgttttat ttatactgtt 540 aatcatcttt atttgcgacg cgattttctt gaatgttagg gagtttctgc agacattgct 600 gtttttgtct ttgttatatg gggaggacta gcttgttaac accttaaggt gttggccact 660 tataatagct gacctttgct ctgcaattaa gtggcgtctt aaagggagtt atttaagccg 720 tgtagagttt tgcaattaaa aatgaagggc caggacgtga ctttgaaaaa cgttgctgta 780 gaattagagg atgtagtcag tccaattata ttggattgcg aggaggagat agaaactgag 840 gaagtagact gtccggcccc gtatgctgta gaggctgttt gttatgtttg tgaaaacccc 900 ttacgtttag ctctcgtctc ctcaccggac gggatccatc aactgcatca actgctgttg 960 gactgcatct ccttactgtg tgcaaactgc tctagagagg tctactctaa ccgcagaccc 1020 caacgaaatg gaccctaatc taaaaggtat taccgggcaa agttttcttg acgaccaagc 1080 agaatgtagt gaatctgata atagcgagca agggtgtgaa gaaagcctgt ctgatttgtc 1140 tgacctaatt gataatgctg aatgcgagca agggaattct gcagaattgt ttgcacaaca 1200 agaggctttc gctttccagg agcacatacg cactacaaaa cgaaagttaa aactgtcatt 1260 ccgtaatcct ttacaatgca ttacgagtca gagtaacagg agcccgggta gagctgcgcc 1320 taaaaggaga gttctagacg acagtggtta taatgaagat attcttgcag aggtggctca 1380 ggtagatgaa aatggcggat cagaggggta tgggagctta gcctcgcagt ctttgtctgg 1440 tcagagtcag aaaaatggta aaaatagagt aaataatgga aataaagaaa atatagactg 1500 cacacgtttg ttagctgcta gcagtcacag ggcggtgcaa ttggcaatct tcaaagaaaa 1560 gtttggtata agtttgaact cgcttactag aatatttaag aatgacaaaa cttgttgcag 1620 caattgggtg ggggttgtgt ttggagccag agaggaattg ctagcggctt ctcaaactat 1680 tttgcaaaga gtttgtgatt ctattatgct gttaacccat acatgtaaac tggggtttat 1740 gggcttgtat ttgttagaat ttaaaaatgc aaaaagcaga gatactgtga gacatttatt 1800 tcagcagatt ttgcaggtgg agaataatga tatgcttttg gagccaccaa aaatcaaaag 1860 cttaccagct gcaacatttt ggtggaaact gcggcatagc agtgctgcat ttttatttgg 1920 aaatttacct gattggatag cacggcaaac gtctataaca catcaaattc aggaggatca 1980 gccatttgac ctgtcagcaa tggtgcaatg ggcctatgat cataatttcg tggatgaggc 2040 acaaatagct tattattatg ctagattagc ctcagaagat tcaaatgctg cagcttttct 2100 tcgctgtaac aatcaagtaa agcatgttaa agaatgtgct caaatgacca gatactataa 2160 aactgctgaa atgagggaaa tgtcaatgag taaatggata aaaaaatgtt tgaatgagat 2220 agaaggtaca ggggattgga aacaaattat taactttatt aagtaccaaa atataaattt 2280 tctgtctttt ttggcatgct ttagggatct tttacatagt gtgcctaaaa gaaactgctt 2340 agtaattgta ggacccccta acacgggcaa atcgatgttt gtgatgagtt tgatgcgtac 2400 tttgaaaggc agagtgttat cttttgttaa ttctaagagt cacttttggc tgcagccact 2460 caatgctgca aaaattgcta ttttagatga tgctactaga cccacctggt cctacataga 2520 tacatactta agaaacggac tggatgggac ccctgtctct ttagatatga agcatagagc 2580 ccccatgcaa atatgcttcc cccctctgat aattacaacc aatgttgatg ttgcaaagga 2640 ccctactttt gtatatttgc atagcaggct tatgtctttt gagtttgcaa atgcatttcc 2700 attagatgaa aatgggaaac ctgctttaat tttaaatgaa cttagctgga aatctttttt 2760 tgaaaggctt tggaatcagc tagacctcac agaaccagag gacgaagacg atggagaccc 2820 tccaagcccg tttcgatgca gtgcaagagc agctgctcga gatttatgaa caggacacaa 2880 gctccttaga cgtccaaata acatattgga cattgattag acatgaacag gctttatact 2940 attatgccag gcgacaaggt atactgaggc taggaatata tcaagtgcct cctacagggg 3000 tttctgaaaa gaaggctaag gatgccatca agatgacatt gttcttaaaa agcttgcaaa 3060 aatcagaatt tgcagcacag ccgtggtcat tgcctgaaac aagtttagag aggtttttgg 3120 cagcgcctga aaatactttt aaaaaaaggg gacagcatgt gactgtgata tatgataaag 3180 attcaatgaa tgctatggag tatacattgt ggacagaaat atatgctgta gatgacaatg 3240 atcagtggca taaatatact agtggtgtag attatgatgg aatctacttt actgatgccc 3300 agggaaacaa gaattattat gtgagctttg cagatgatgc agccttgtac tctaaactgg 3360 gacattggga agtgcaatat gaaaaccaag ttctttctcc tcctgttacc agctcgcttc 3420 ctcctgggcc caacagaaga cgggggcccc aaaccagggg acaccccaga cacaagagcg 3480 cctccttccg cagatctgcc tcatctgggt ccgatacccg agactccagg ggacggtcgc 3540 ggtcgccctc gtcttcgcga tcccgatcac ggtcacggtc acgatcgccg tcggggtcgc 3600 actccagacc acgagcgccg cacgtacccg accaggagac cgggagacca cccggaggag 3660 gaggacgaag aggaagcaga gaccaacaac agggccctgg aggaccagct ccgccatctc 3720 ctggagaagt gggaacgcga tctggaccgc ctgagacgaa agctaaagga agacttgctg 3780 agcttataag tgcagcatac gaccctcctg tgcttctgct tcaaggttgt gcaaacacat 3840 taaaaagctt tagacgccgt actacgcagt cctacccaca cactttcctc tgcatgagta 3900 caagctggac atgggctagc aaaacctgta cagttaaatc tgggcataga atgctggtgg 3960 catttgtgaa ctctgagcaa agaactcttt ttcttgctac tgtgaaaatc cccaaaggtg 4020 tgacttgctt gaaagggtct tttgacgggc tatagcagta tattaaaatg gttcgtgcag 4080 caagacgtaa acgtgcctct gaggatgatt tgtccagggg ttgcagggct gggcaagact 4140 gccccatcga tatcaaaaac aagtatgaac agaacacact agctgacaga atactcaaat 4200 gggttagctc attcctatac tttggcacat taggaataag cagtggcaaa ggtactgggg 4260 gtgctacagg ctacacacct ataggagggg gaggagtaag aggggggaaa ggagcaaatg 4320 tagtaaggcc aacagtttta gtagatgcat tgggcccaac aggggtgcca atagatccag 4380 tgaccccaga tgaagctctt gtccccttac ttgaaagtag tggtgggagt acaactttag 4440 acgtcccacc tgggggtgaa attgaagtga ttgctgaagt tcatccacca ccagctgcag 4500 gagaccctga aattacaata gggcatccag aagagcctcc tatattagag gtcatacctg 4560 aaactcaccc tactactcgt gttagaacca cggttagcaa gcatgacaac cctgcattca 4620 cagcttatgt tgcaagtgca caattaccag gggaaacctc agcatcagac aatgtgttta 4680 ttttgcatgg gtttaatggt gaatatgtag gtcctgcaca aactggggaa gatactgtgt 4740 ttgaagaaat agaattggaa aattttgggg tgcctgaaag cccacctagc agcagcacac 4800 ccaatactag cttcagaaat attttgaaca aatttcaaag acgtttgtat aacaggaggc 4860 tagtccagca agtcaaaatc acagacagaa catttttgac caagccttct aaattagtct 4920 catgggaatt tgataatccc acttacacag acgactccct gtcattaata tttcaacaag 4980 atgtggatga agtcagtgct gcgccaatgg cagaatttca agacattgtc acccttagca 5040 ggccagttgt ttatgagaga gagggcttag tcagagttag ccgtttaggc caacgtggca 5100 caattcgtac tcgcagtggc ttgcgaatag gtggacatgt tcattactat acagacataa 5160 gtccaattag acctgttgaa gatattgaaa tgagaacact tggcgaagtt tctggtgaca 5220 gtgtcataat gcaacctttg gcagaaagca catttgtgga ttcaggggat gttcttaatg 5280 aaggcaacat tgaatttcca gacagcacat tagaagatga ttataatgag gattttagcc 5340 gggctcgttt agaaataacc acctctgcaa gaagcagaac gagcatagtt acggtacaag 5400 aaggcatacc accaggctca gtcaaactgt tcattaatga tgcagagacc attgtaacac 5460 cccacggccc tgaatcaaat gacacagata ggtaccagcc tttcattcca gtcacacctg 5520 cagctactcc tgatattatt attacttttg aagaagggac tgccacattt ttcttgcatc 5580 ctagcctgtt aaagagacac aaacataaac actggttttt ttgatgtttt tgcagatgtc 5640 attttggtta ccaagccaag ggaagctgta tttgccacca ccaacagctg tcacacaata 5700 tctagacacg gatgactttg tcacacgcac tgacaccttt taccacacga acactgaaag 5760 actactgttt gtggggcatc catactttga cattaaacgt gaggacaagg ttctggtacc 5820 caaagtttct ggcagtcaat tcagagtatt caggctaaag tttccagacc caaataagtt 5880 cagttttccc gatccaaatg tatacaactc tgataatcaa aggctagtct gggctctgcg 5940 gggcattgaa atttgtagag gccaaccttt aggaataggg gtgactggac acccctcttt 6000 taacaaattc aaagatgcag aaaacaacaa caacaaaaca cctgatcaaa ccacagatga 6060 ccgggttaac atggctgtag accctaagca ggtgcaaatg tttattgttg gctgcacccc 6120 ctgcgatggt gagcactggg atgttgcaca agcatgtgac cggctggaac caggagcatg 6180 tccccctatt gaactgaaaa acactattat agaagatggg gagatgtgtg acactgggtt 6240 tggaaatatg aactttcaga aattgcaagc tagcaaatca ggagctcctt tagatattgt 6300 gaaccagata gttaagtatc cagacttttt aaaaatgggt agtgatcctc atggcaactc 6360 aatgtttttt tatgctaaaa gagagcagat gtacgtgagg catttatggt ccaggggtgg 6420 cacaatagga gaagaaattc cacctaatgg agaagctagt ccatattatt tgcctggagc 6480 aggacgagct accttaccta cctctgtgta cttcggatcc cccagtggct ctttggtctc 6540 tagcgaccag cagatttaca atagaccctt ttggatacaa cgagcacagg gcagaaacaa 6600 tggcatttgt tggaataatc agctatttgt cactgctgtg gacagtacaa ggggtaccaa 6660 ttttactatt tctgttcaca gagacaaacc tagtttagag gaccaggata cttacacagc 6720 cgcagaattt aagcattatt taagacatgt agaagaatgg gaagtgtcct tagttctgca 6780 actgtgtata gtggacctaa caccagaggc tttagctcac attaatggca tggatcctcg 6840 aattatagag agctggaact taggctttat acatgcaccg aataatatag aggatcaata 6900 cagataccta cagtcaattg caactagatg cccccctaaa gaagatgctg ctgcaactga 6960 ggacccttat gcaaagtaca cattttggga tgtggacctt acagaacgat tttctatgaa 7020 tttagatcag tattccttag gtagaaagtt cttatttcaa ataggaaaga aaagcagagg 7080 aatcaaacgg tctgcaccga aagcggtcac ttttgaaagt agcagccgca gcaaaaaggc 7140 gccaaagcgt aggcgtaaga atgtctagag ccaaaactat gagcaatatg tacatcaaca 7200 acaagcattg acaaagaata aattcatgta agcctttgtg aatcttgcca ataaaatgct 7260 gatctgagcc accct 7275 //