ID AJ620206; SV 1; circular; genomic DNA; STD; VRL; 7840 BP. XX AC AJ620206; XX DT 12-JAN-2004 (Rel. 78, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Bovine papillomavirus type 5 complete genome XX KW E1 gene; E2 gene; E6 gene; E7 gene; L1 gene; L2 gene. XX OS Bovine papillomavirus 5 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; OC Epsilonpapillomavirus. XX RN [1] RP 1-7840 RA de Villiers E.M.; RT ; RL Submitted (02-JAN-2004) to the INSDC. RL de Villiers E.M., Div. Characterization of Tumorviruses, Deutsches RL Krebsforschungszentrum, Im Neuenheimer Feld 242, Heidelberg, 69120, RL GERMANY. XX RN [2] RA Delius H.; RT "Sequencing of the complete genomes of BPV 3, BPV 5 and BPV 6"; RL Unpublished. XX RN [3] RX DOI; 10.1016/0042-6822(85)90398-8. RX PUBMED; 2998027. RA Coggins L., Ma J., Slater A., Campo M.; RT "Sequence homologies between bovine papillomavirus genomes mapped by a RT novel low-stringency heteroduplex method"; RL Virology 143(2):603-611(1985). XX FH Key Location/Qualifiers FH FT source 1..7840 FT /organism="Bovine papillomavirus 5" FT /host="Bos taurus" FT /mol_type="genomic DNA" FT /db_xref="taxon:40537" FT CDS 106..510 FT /gene="E6" FT /product="E6 protein" FT /db_xref="GOA:Q8BDG7" FT /db_xref="InterPro:IPR001334" FT /db_xref="UniProtKB/Swiss-Prot:Q8BDG7" FT /protein_id="CAF05671.1" FT /translation="MPYWLPTYNFEGLQCLQCKKALGSLDALKCKNHKYRRVHRGGKPY FT GMCQICLEALLQLERQEFPWTLLLPKDFVKVLGRLPGDYCVRCYYCGCVLSDSEKDRHA FT LDHEGYLYVRGRARGRCYSCSSDGRRPCVF" FT CDS 485..859 FT /gene="E7" FT /product="E7 protein" FT /db_xref="GOA:Q8BDG6" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/Swiss-Prot:Q8BDG6" FT /protein_id="CAF05672.1" FT /translation="MVAGPACSKFLPQDPPPPSVTLVLHDLTQEEDEQDFVTLHAQYRP FT TFKDKTPRRPGYNPRAAPCHIQRLSARCSVFFVQVGCPCGQPLKIAVQSTPDCISQFEQ FT LLRGPLDLLCPHCASRCYGR" FT CDS 849..2729 FT /gene="E1" FT /product="E1 protein" FT /db_xref="GOA:Q705G8" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/Swiss-Prot:Q705G8" FT /protein_id="CAF05673.1" FT /translation="MADKSGRLLGGCSFVLDEADCSDLEIDSDDESDKENVPNGQDMCN FT SFDAEFIDNAPLAQGNTLALFQSQVAQAGKQKVNYLKRKLHLESSELGTVGRAVLQPVN FT HSTPAAKRRLFECSSSENEVSYAASPAAANTQVFRNQNSGSVGGSSGFGSQASVSQSQQ FT NSNLHLQILKSKNSAACKLAVFKFVYAASFCDLTRPFKNDKTTNYQWVAAVFGVSEELF FT EASKQLLGRSCTYLHATCRAHEKGSVALLLLSFHVAKSRETVTNLLKNLLNLRAEHMML FT QPPKLRGVTSAMFWYKMTLSPNTYTWGQLPRWIEQQILITENSSEVLKFDFSHMVQWAL FT DNEMMDESSIAFHYAQMADHDSNARAWLGLSNQAKIVKDVCTMVHHYQRAIMRSMTMSA FT YVHKMCERVNVTGSWLVIMQFLKFHGIEPIRFVNALRPWLQGVPKKNCLAFIGPPDTGK FT SLFTNSLMSFLKGKVLNFANSASHFWLAPLTEAKVALIDDATHACLKYCDTYLRNFFDG FT YSVCIDRKHKNAVQIKAPPMLLTSNIDIQAEEKYSYLKSRVTCFYFNDKCPLNEDGKPL FT FQITDPDWKSFFERLWQRLELSDQEEEEEGDENGSRGTFICSTRNSNDFT" FT CDS 2674..3903 FT /gene="E2" FT /product="E2 protein" FT /db_xref="GOA:Q8BDG4" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/Swiss-Prot:Q8BDG4" FT /protein_id="CAF05674.1" FT /translation="MAAAERLSAAQETQMTLLEKPSFDLKDHISYYGALRTENTIFYAA FT RKKGLTSLGHCPVPTLATAAANAKAAIEMQLLLKDLLRSPFAKNDWSLNDVSHERYKAP FT PSDTLKRKPRIVEVIFDKDPQNKTWYTLWDEVYVCTVDGWTLTTSGADATGIFVNMQGS FT RQYYELFGEDAQRFGTSGTWEVIDQNQRFHFPPSSRADTTDGLPGLQEEPRGGDGPTCS FT GPAPAIPDSPSRCLSRGFAGRDPGCHRNRHRVHPYILSGGQRILVTSSSSSTVQGPLSS FT GSSQHSQSRGRPPSPDSTETERARTPVNSDRQRAGEFDLLKGGCRPCCLIEGNGNKVKC FT LRFRLKKSHRSRFLDITTTFWATGDEGSDRQGNGTILITFTDTTQRDLFLGSVSIPGEL FT SVRRITISTD" FT CDS 4101..5657 FT /gene="L2" FT /product="L2 protein" FT /db_xref="GOA:Q8BDG3" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/Swiss-Prot:Q8BDG3" FT /protein_id="CAF05675.1" FT /translation="MAVRLRRVKRANPYDLYRTCATGDCPQDVKDRFEHNTIADKILKW FT GSAGVFLGGLGIGSTQARPGLGTYSPLGRGGVTGRIPVRGPGSTRPLGRPFSSGPIDTI FT GAGVRTSVETSVTVPDVVAVLPESPAVITPDSMPVDPGVGGLDISAEIIEEPSLTFVEP FT HGPEDVAVLDVNPAEHDRSVYLSSSTTHHNPSFQGQVTVYTDIGETSETENLLISGSNI FT GSSRGEEIQMQLFSGPKTSTPETDAVTKVRGRANWFSKRYYTQTSVRDPTFIQEPQTYF FT YGFENPAYEPDPFEDSFDVQLASPSEPVQPELRDITHVSAARTFRGESGRVGISRLGQK FT SSIQTRSGVTVGGRVHFRYSLSTIEDAIEDAGEIELQVTNGSQGPSGSLQHTAETILSE FT GHDAYVDVDMDSVGSLYSDIDLIDEHSETPHGILVFHDEAETDVVPVIDVSYVRKPLST FT IPGSDLWPTNINIQNGPVDVDLQDSILPGIIITDSGVDGTYFLNTYLHPSLHKRKKRRF FT S" FT CDS 5669..7153 FT /gene="L1" FT /product="L1 protein" FT /db_xref="GOA:P50806" FT /db_xref="HSSP:1DZL" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/Swiss-Prot:P50806" FT /protein_id="CAF05676.1" FT /translation="MAVWQQQGQRLYFPPNPVTKVLCTESYVKRTSIFYHGETERLLTV FT GHPYWKIPEQNIPKVSGNQYRVFRVQLPDPNQFALPDKNLHNPAKERLVWAILGLQVSR FT GQPLGAPVTGNQLFNVWTDAENVTAKRALPGSDDRKQLGMDVKQTQMLLIGQSPAIGEY FT WGKAIPCEGKQPKAGDCPPIELKNKPIEDGDMMDIGFGACDWKDFSQNLSDVPLDLINS FT KSLYPDYLKMAEDSLGNSCFFYARREQVYVRHVYSRGGEQKEAIPKDMTLPQQVPDNKD FT TSFTFMGTPSGSLVSTDGQLFNRPYWLYQAQGLNNGVCWDNELFITVGDNSRGGVFTIS FT VPVDDRKPEQYNSANMNIYCRHVEEYKLAVILELCSVELTSETVAYLQTVNPSVLEKWE FT VGVNPPPATVLEDTYRYQESKAIKCIDQTAAAKKDKYENLSFWNIDLREKLSADLDQYP FT LGRRFLAQNGITCSRKRLRPASTKKSTTNKKRKTSR" XX SQ Sequence 7840 BP; 2314 A; 1578 C; 1886 G; 2062 T; 0 other; gagaatgctt atagtacagc caaaaactga ggatgctggg acaaaaaaaa aagtggtata 60 taaagtgccg caccgcagga ggttgtttat tagatagtgg ggactatgcc atactggttg 120 cccacatata acttcgaagg actgcaatgc ttgcagtgca agaaagcttt agggtccctg 180 gatgctctaa aatgcaagaa tcataaatat aggagggtgc atagaggggg aaagccttat 240 ggcatgtgtc aaatttgctt agaggctttg ctgcaattag aaaggcaaga atttccttgg 300 acattgctac tgccaaagga ctttgttaaa gttttgggga gactgcctgg agactattgt 360 gtacgctgct attactgtgg ctgcgtgttg tcagacagtg aaaaagatcg ccacgccttg 420 gaccacgaag gttacctgta cgtccgtgga agagccagag gccgctgcta ctcttgctct 480 agtgatggtc gccggccctg cgtgttctaa atttctgcca caagaccctc caccaccctc 540 agtgacactg gttcttcatg atttgactca agaagaggat gaacaggatt ttgtaacgct 600 gcacgcacaa tatagaccaa cttttaaaga taaaactcct agacgacctg gctacaatcc 660 tcgtgctgct ccctgccaca ttcagaggct ctctgcgagg tgctcagttt tttttgtgca 720 agtcggatgc ccctgtggtc agcctttgaa gattgctgtg caaagtaccc cagactgtat 780 ctctcagttt gaacaacttc tgcgaggacc tttagatctt ctgtgtcctc actgcgcatc 840 ccgctgctat ggcagataaa tcaggtagat tgctgggggg ctgctctttt gtattagatg 900 aggctgactg tagtgatctt gaaatagata gtgatgatga gtctgataag gaaaatgtgc 960 caaatggaca ggatatgtgc aatagcttcg atgctgaatt tatagacaat gcgcctttag 1020 cacagggaaa taccctggcc cttttccaga gccaggtagc ccaggcggga aaacagaaag 1080 taaactatct caaaagaaaa ctgcacctcg agtcgagtga gctgggcacg gttggtagag 1140 cagtgctgca gcctgtgaac cacagcaccc cagcagctaa aaggcgcctt tttgagtgct 1200 caagtagtga aaatgaagtt agttatgctg cttcgcccgc cgccgcaaac acacaggtat 1260 ttagaaatca aaatagtggg tctgtgggag gaagtagcgg gtttgggtca caggcttcgg 1320 taagtcagtc tcaacaaaac agtaatttac atttgcagat tttaaagtct aaaaatagtg 1380 ctgcttgcaa gcttgctgta tttaagtttg tgtatgctgc gagtttttgt gacttaacta 1440 gaccttttaa aaatgataaa acaacaaact atcagtgggt ggcggcggtc tttggggttt 1500 cggaggagtt gtttgaagct agtaagcagt tgctaggtag aagctgcaca tatttgcatg 1560 cgacctgcag agcccatgaa aagggctcag ttgctttgct tttattatcc tttcacgtgg 1620 caaaatctag agagacagtc acaaatctgt taaaaaattt gctcaattta agagctgagc 1680 acatgatgct gcagcctcca aaacttagag gggtaacatc tgcaatgttt tggtataaaa 1740 tgacattaag cccgaatact tatacatggg ggcagttacc taggtggata gaacagcaaa 1800 tattaattac agaaaatagt tcagaagttt taaaatttga tttctctcac atggtccaat 1860 gggcccttga taatgagatg atggatgagt cctccatagc ttttcattat gcgcagatgg 1920 ctgatcatga ctctaatgcc agagcatggc taggtttaag taatcaagct aagatagtta 1980 aagatgtctg cactatggta catcattatc agagagctat aatgcgtagc atgacaatgt 2040 cagcatatgt gcacaaaatg tgtgaaagag taaatgtgac tgggtcttgg ttagtgatca 2100 tgcagttttt gaagtttcat ggaattgagc caataagatt tgtgaatgcc ttgcgcccat 2160 ggcttcaagg agtgccaaaa aaaaactgtc ttgcatttat agggccacct gatactggca 2220 aatctttatt cactaatagc ctgatgagtt ttctaaaagg caaagtttta aattttgcaa 2280 atagtgcaag tcacttttgg ctggcccccc tgactgaagc caaggtagct ttaatagatg 2340 atgccacgca tgcctgctta aaatactgtg atacttacct tagaaatttt tttgatggtt 2400 attctgtgtg cattgatagg aagcataaaa atgcagtcca aataaaagca cctccaatgc 2460 ttttaactag caatatagat atacaggcag aagaaaagta ttcttacctc aaaagcaggg 2520 tgacctgctt ctattttaat gataaatgtc ctctaaatga agatggaaaa ccactgttcc 2580 aaataactga ccccgattgg aaatcttttt ttgaaaggct ttggcagcgt ttagagctca 2640 gtgaccagga ggaggaggag gagggggacg aaaatggcag ccgcggaacg tttatctgca 2700 gcacaagaaa ctcaaatgac tttacttgag aagcctagct ttgatttaaa agatcatata 2760 tcatattatg gggctctgcg aacagaaaac actatttttt atgcagctcg caaaaaaggt 2820 ctgacctcac ttggacactg tccagttcct accctggcaa ctgcagcagc caatgcaaaa 2880 gcagcaattg aaatgcagct gctgctaaaa gacttgttac gttcaccttt tgccaaaaat 2940 gattggtcac tcaacgatgt tagccatgag cgctacaagg cccctcctag tgacactttg 3000 aaaagaaagc ctagaattgt ggaggttata tttgataagg atccacagaa taaaacctgg 3060 tacactctat gggatgaagt gtacgtatgc actgtagatg ggtggacttt aaccactagc 3120 ggcgctgacg ccacaggcat atttgtcaat atgcagggca gccggcagta ttatgagctt 3180 ttcggagagg acgctcagag gtttgggacc tctggaacgt gggaggtcat agatcaaaac 3240 caacggtttc attttccacc atcctctaga gcggacacca cagacggtct gcctggactc 3300 caagaggaac ctcgaggagg agacggacct acctgctccg gacctgctcc agccatccct 3360 gactctcctt cacgttgctt atccagaggt tttgcaggaa gagatcctgg ctgtcaccgt 3420 aacagacacc gcgtacatcc ctacatttta tcaggaggcc aaaggatact ggtcacttcc 3480 agttcatcat ccacggtgca aggccctctt tcgtcgggtt cttcacaaca ctcgcaaagc 3540 cgcggtcgcc cgccatcacc ggattcaacg gaaacagaaa gggctcggac accagtaaac 3600 tctgaccgcc agcgtgcagg agaatttgac ttgctgaaag ggggctgcag accctgctgc 3660 ttaattgaag gtaatggcaa caaggtgaaa tgcttgcgct tcaggcttaa aaaaagtcat 3720 cgatccaggt ttctggacat cactactact ttttgggcta caggggatga gggctcagac 3780 agacaaggca atggaactat cctaatcact ttcactgata ctactcaaag ggacttattt 3840 cttggaagtg tctctattcc tggtgaactt tcggttcgac gcattacaat ctctacagac 3900 tgaactttag ccatgcaatc ttgcaggaca atggtctgca gagaccctta atgttttgtc 3960 tgtatgtttt cttaattttt ccacatttag aatgtacttt atggtgctgt gacttgctgc 4020 tgtgtatcat tatattgtgg cttttttata tgtgtttaaa caatttgtaa cttttatact 4080 ttttcagtaa agttttaaac atggctgtgc gtctgcgtag agtcaaaagg gcaaatcctt 4140 atgacctata cagaacctgt gctactggtg actgtcccca agatgttaag gacaggtttg 4200 agcataatac aatagctgac aagatactta aatggggaag tgcaggagtg tttttagggg 4260 gcttgggtat aggcagtaca caagctaggc cagggcttgg aacctattcc ccacttgggc 4320 ggggaggtgt tactgggaga atccctgtca gggggccagg aagcaccaga cccttaggaa 4380 gaccatttag ctcaggcccc atagatacaa taggagcagg ggttcgtaca tctgtagaaa 4440 ctagtgtgac tgtccctgat gtagtggctg tcctgccaga atctccagca gtaattacac 4500 cagatagtat gcctgtagac cctggagtgg ggggtttgga tattagtgca gaaattatag 4560 aggaaccatc attgactttt gtggagcctc atggaccaga agatgttgct gttttggatg 4620 tgaatcctgc agagcatgat cgcagtgtgt atttatcttc tagcaccaca caccataacc 4680 cctcttttca aggtcaagtg acagtgtaca ctgatattgg ggaaacttct gagactgaaa 4740 atttactgat tagtggcagc aacatagggt cgagcagggg agaagagatt caaatgcaat 4800 tattttcagg gcctaaaacc agcacacctg aaactgatgc agtgactaag gtaagaggcc 4860 gagctaattg gtttagtaaa aggtactata ctcagaccag tgtgcgagac cctaccttta 4920 ttcaagagcc acaaacatat ttctatggtt ttgaaaatcc agcttatgag ccagatccat 4980 ttgaggatag ttttgacgtg caattagcca gtccatctga acctgtacag cctgaactta 5040 gagatattac acatgttagc gctgctagaa catttagggg ggaatctggg cgggttggta 5100 ttagcagact tggccagaaa tcctctattc aaactagaag tggtgtgaca gtgggaggac 5160 gtgtgcattt tcggtactct ttaagcacaa tagaagatgc aatagaagat gctggggaaa 5220 tagaattaca ggtcacaaat gggtcacaag gtcctagtgg gtcactgcaa cacacagcag 5280 aaacaatttt aagtgagggc catgatgcat acgttgatgt tgacatggat agtgtgggga 5340 gtctttatag tgacattgat ttgattgatg aacacagtga aactcctcat ggtattctgg 5400 tgtttcatga tgaagctgaa acggatgtgg tgcccgttat agatgtctca tatgtaagga 5460 aaccattgtc aacaatacct ggaagtgacc tttggcctac aaatataaac atacagaatg 5520 gtcccgtgga tgtggatttg caagacagca ttttacctgg cataatcatc acagattcag 5580 gggtggatgg cacatatttt ttaaacacat acctacaccc aagcttacac aaaagaaaaa 5640 aacgcaggtt ttcctgattg ttttgcagat ggcggtttgg cagcagcaag gacaaagact 5700 atacttcccc cctaaccctg taactaaagt actgtgcaca gaatcatatg tgaaaagaac 5760 atctatattt tatcatggag aaacagaaag actactcaca gtaggccacc cttactggaa 5820 aattccagaa cagaatattc caaaagttag tggcaatcag tatagagtct ttagagtgca 5880 gctgccagac cctaatcaat ttgcactgcc agataaaaat ttacataatc ctgcaaaaga 5940 aagattggtg tgggcaatat tgggccttca ggtaagtaga ggacagcctc taggagcccc 6000 tgtcacaggg aatcaattgt ttaatgtttg gacagatgca gaaaatgtga ctgcaaaaag 6060 agcactgcca ggatcagatg atagaaagca gctaggaatg gatgttaagc aaacacagat 6120 gctgctcatt ggacagtccc ctgctattgg tgaatattgg ggaaaagcta ttccttgtga 6180 aggtaaacag ccaaaagcag gggactgtcc tcccatagaa ttaaagaaca agcctattga 6240 ggacggagat atgatggata taggctttgg ggcctgtgat tggaaagact tcagtcaaaa 6300 tttatctgat gtccccttag atcttattaa ttcaaaaagc ttgtatccag attatttaaa 6360 aatggcagag gattctttag gtaacagctg ctttttctat gcccggagag agcaagtgta 6420 tgttagacat gtttatagta gagggggtga acaaaaagaa gccataccta aagacatgac 6480 tctgccccag caggtaccag ataataagga cacttctttc acatttatgg ggacacctag 6540 tggctcctta gtttctacag atggacagct atttaacaga ccttactggc tctaccaagc 6600 tcaaggttta aataacgggg tctgctggga taatgagcta tttattacag taggagacaa 6660 tagtagagga ggagtgttta caattagtgt tccagtggac gataggaaac ctgagcagta 6720 caatagtgcc aatatgaata tttattgcag gcatgtagag gaatataagc tagccgttat 6780 tctggagcta tgtagtgtgg agctgacctc agaaaccgtt gcatatttgc agaccgttaa 6840 cccttctgtc ttagaaaaat gggaagtagg agtgaaccct cccccagcca ctgtattaga 6900 agacacttat agatatcagg aatccaaggc tataaaatgc atagatcaga cggcagcagc 6960 taaaaaagat aaatatgaaa atcttagctt ttggaatatt gatctcagag aaaaattatc 7020 cgcagatttg gatcaatatc ctctaggcag acgcttctta gcacaaaatg gtattacctg 7080 tagcagaaaa agattgcgcc ctgcaagtac taaaaaaagt acaacaaata agaaaagaaa 7140 aacatcacgt taaggtttgt attctggtat gtatgtactg gggactggga gtgggcttcg 7200 ggtgggtcaa atacttgctt gctaataaag ctcttaatga tgcctatgtg tcatgaaatt 7260 tgtgcaccac acccggtcgg gttgctacaa gtaggtataa aactggcgcc aagtgctggg 7320 ctctggccac cttggcgcca gcactatctt tttggccgaa gatccactgc agctgcagct 7380 gcaaaactgc agcgtcgaca gaaacaagcc tctgcgcgcc aaaaacgctg acggtgccca 7440 ttgttaaagg gtggattaga gcagctgtaa gggtgagtaa caccggaagc cttgggaggg 7500 ctcctgcacc gctgccggtc ttaaaggtgt cccccgagcg accgacctct cgcggtcgaa 7560 attaaatagg aaataactga aaaaattaga ccagcagcgg tgcatggcgc cgctttatga 7620 catcggacac acgccctacg ggataaatta gggcgaagta gaacaataac ccagtaaaaa 7680 ggaagtaaaa cggatataca ccgcgagcgg tgttttggta ctgtgtgcaa aggtaagtca 7740 aggcgggaac ctctcaacca atcaattcaa actgtaccgg gagcggtgcc accgcctgcg 7800 gttttccttc tttttctagg agaagattgt tgttaacaat 7840 //