ID AJ550635; SV 1; circular; genomic DNA; STD; PHG; 4554 BP. XX AC AJ550635; XX DT 19-MAY-2004 (Rel. 79, Created) DT 19-MAY-2004 (Rel. 79, Last updated, Version 1) XX DE Chlamydia phage 3, complete genome XX KW complete genome; nonstructural protein; ORF1; ORF2; ORF3; ORF4; ORF5; ORF6; KW ORF7; ORF8; structural protein. XX OS Chlamydia phage 3 OC Viruses; ssDNA viruses; Microviridae; Gokushovirinae; Chlamydiamicrovirus. XX RN [1] RP 1-4554 RA Garner S.A.; RT ; RL Submitted (19-MAR-2003) to the INSDC. RL Garner S.A., Molecular Microbiology and Infection, University of RL Southampton, University Medical School, Southampton General Hospital, RL Southampton, So16 6YD, UNITED KINGDOM. XX RN [2] RA Garner S.A., Everson J.S., Lambden P.R., Fane B.A., Clarke I.N.; RT "Diversity and host range in the Chlamydiaphages"; RL Unpublished. XX DR MD5; f9f9bf76fffce2a0c9a2674ba0b44d19. XX FH Key Location/Qualifiers FH FT source 1..4554 FT /organism="Chlamydia phage 3" FT /host="C. pecorum" FT /mol_type="genomic DNA" FT /country="United Kingdom" FT /db_xref="taxon:225067" FT CDS 1..1698 FT /transl_table=11 FT /product="structural protein" FT /note="ORF1" FT /db_xref="GOA:Q6KF06" FT /db_xref="InterPro:IPR003514" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:Q6KF06" FT /protein_id="CAD79477.1" FT /translation="MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFNAGYLIP FT IFCDEVLPGDTFSLKEAFLARMATPIFPLMDNLRLDTQYFFVPLRLIWSNFQKFCGEQD FT NPDDSTDFLTPVLTAPTGGFTEGSIHDYLGLPTKVAGVQCAAFWHRAYNLIWNQYYRDE FT NIQESVEVQMGDTTTDEVKNYELLKRGKRYDYFTSCLPWPQKGPAVTIGVGGKAPIEGL FT YMNVNSNNPVGKFVLDSQSTPRVLQDLQGNKLSGIAAYNQTGKHVYVNSAWYTVTPQSE FT PGATLENGNYYTTQKPQIYADLGATSPVTINSLREAFQLQKLYERDARGGTRYIEIIRS FT HFNVQSPDARLQRAEYLGGSSTPVNISPIPQTSSTDSTSPQGNLAAYGTAIGSKRVFTK FT SFTEHGVILGLASVRADLNYQQGLDRMWSRRTRWDFYWPALSHLGEQAVLNKEIYCQGP FT SVKNSGGEIVDEQVFGYQERFAEYRYKTSKITGKFRSNATSSLDSWHLAQEFENLPTLS FT PEFIEENPPMDRVLAVSNEPHFLLDGWFSLRCARPMPVYSVPGFIDHF" FT CDS 1406..1504 FT /transl_table=11 FT /product="nonstructural protein" FT /note="ORF7" FT /db_xref="UniProtKB/TrEMBL:Q6KF05" FT /protein_id="CAD79478.1" FT /translation="MSKSLDIRRDLRSIAIRLRKLPASSDQMLQVL" FT CDS 1791..1949 FT /transl_table=11 FT /product="nonstructural protein" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:Q6KF04" FT /protein_id="CAD79479.1" FT /translation="MWRIYESRTTYEYSRFSSFWSCARIILSPWNSFRSFRISWCTKAK FT CDCEANC" FT CDS 1804..2364 FT /transl_table=11 FT /product="structural protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:Q6KF03" FT /protein_id="CAD79480.1" FT /translation="MNPEQLTNTLGSAVSGVAQGLSFLPGIASGVLGYLGAQKQNATAK FT QIAREQMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSKGGASSPAGASWSPNNPVESAM FT NSGLAVQRLTYERKKMQAELQNLREQNRLIRNQAIREGYLAERDKYMRVAGVPVATEML FT DRTSGLISSSARAFKNLFSRKGR" FT CDS 2365..2811 FT /transl_table=11 FT /product="structural protein" FT /note="ORF3" FT /db_xref="InterPro:IPR014131" FT /db_xref="UniProtKB/TrEMBL:Q6KF02" FT /protein_id="CAD79481.1" FT /translation="MFKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVL FT EHVERRSPRYMDCMDPMEYSEALNVVIEAQEQFDSLPAKIRERFGNDPEAMLDFLSREE FT NYEEAKALGFVYEDGTSGAPQTLFEAGPKDDQNVANQEPGLAQK" FT CDS 2999..3133 FT /transl_table=11 FT /product="nonstructural protein" FT /note="ORF8" FT /db_xref="UniProtKB/TrEMBL:Q6KF01" FT /protein_id="CAD79482.1" FT /translation="MRLKMARRRYRLPRRRSRRLFSRTALRMHPRNRLRRIMRGGIRF" FT CDS 3316..4263 FT /transl_table=11 FT /product="nonstructural protein" FT /note="ORF4" FT /db_xref="UniProtKB/TrEMBL:Q6KF00" FT /protein_id="CAD79483.1" FT /translation="MTCAYPFVCFIDSDNQLFFPKGVKSSKPWDKVRELNALEQAQPEE FT YRVRWVVKPCLKCRFCRVQNAKIWSYRCMHEASLYSQNCFLTLTYEDRHLPENGSLVRD FT HPRLFLRRLREHIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLF FT VSEKLMQLWPFGFSTVGSVTRQSAGYVARYSLKKVNGDSSQDHYGQRLPEFLMCSLKPG FT IGADWYEKYKRDVYPQDYLVVQDKGKSFKTRPPRYYDKLHSRFDPEEMEEIKQRRVEKF FT MALPELTQDKAEVKQYIFNDRTKRLFRDYEEESY" FT CDS 4293..4547 FT /transl_table=11 FT /product="nonstructural protein" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:Q6KEZ9" FT /protein_id="CAD79484.1" FT /translation="MKVFTVFDIKTEIYQQPFFMQATGAAIRAFSDMVNEDPTKNQFAA FT HPEDYILYEIGSYDDSTGTFIPLDVPKALGTGLDFKHKQ" XX SQ Sequence 4554 BP; 1307 A; 840 C; 1029 G; 1378 T; 0 other; atggttagga atcggcgttt gccttcagtt atgagtcatt ctttcgcgca agttccgtca 60 gcgcgaattc agagaagttc ttttgataga tcttgtggtt taaaaactac attcaacgcc 120 ggttacctaa tccctatctt ttgtgatgaa gttctccctg gagatacttt ctccttgaaa 180 gaggcgtttt tagcacgtat ggcaacgcct atctttcctc ttatggataa tttgcgttta 240 gatacgcagt atttctttgt tcctcttcga cttatatggt cgaatttcca aaagttctgt 300 ggagaacaag ataatcctga cgattccaca gattttctta cccccgtttt aaccgctcct 360 actgggggat ttactgaagg atcgattcat gattatcttg gtctacctac taaagttgca 420 ggagttcaat gcgctgcgtt ctggcacaga gcctacaatt tgatttggaa ccagtactat 480 cgcgacgaaa atattcagga atctgttgaa gtgcaaatgg gagatactac tacagatgag 540 gtgaagaatt atgagcttct taagcgcggg aagcgttatg attatttcac ttcatgtctc 600 ccttggccac aaaaaggtcc tgcagtgaca atcggagttg gaggtaaggc tccaattgaa 660 ggattgtata tgaatgtaaa ttcaaacaat cctgtaggaa agtttgtttt ggattctcag 720 tctactcctc gtgtgcttca agatttgcaa gggaataaac tttctggaat agctgcgtat 780 aatcagactg ggaagcatgt gtatgtgaat tctgcttggt atacggtgac tcctcagtct 840 gagcctggag ctactttaga gaatggtaat tattacacca ctcagaaacc tcagatttat 900 gcggatttag gtgcaacatc tcctgtgacg attaattctc ttcgtgaagc tttccaattg 960 cagaagcttt atgagagaga tgcccgtggt ggaacaaggt acattgagat tatccgttcc 1020 catttcaatg tgcagtctcc agatgcaagg ttgcaacgtg cagagtatct tggaggttct 1080 tcaactcctg tgaatatttc tccgattcca cagacttcct caacagactc cacatctcct 1140 caaggaaatc ttgctgctta tggtacagcg attggatcga agcgagtctt cacgaagtct 1200 ttcacagaac atggtgtaat ccttggatta gcttctgtac gcgccgatct caactatcag 1260 caaggtttgg ataggatgtg gtcacgaaga acacgttggg acttttattg gcctgctctt 1320 agccatttag gtgagcaagc tgtgctcaat aaagagatct attgccaggg tccttcagtt 1380 aaaaattctg gaggagagat tgtggatgag caagtctttg gatatcagga gagatttgcg 1440 gagtatcgct ataagacttc gaaaattacc ggcaagttcc gatcaaatgc tacaagttct 1500 ttagattcat ggcatttagc tcaggaattt gagaatcttc caacgctttc tccggagttt 1560 attgaagaaa atcctcctat ggatcgtgtt cttgctgtaa gtaatgagcc acattttctc 1620 ttagatggct ggttttcatt gcgttgtgca agaccaatgc ctgtctactc tgttccaggc 1680 ttcattgatc atttctaatt tctactcggt tttccggttt gataaaacaa actcacgttc 1740 gtagataagt gagtacggtg aagaccaaaa cggaaagctg aggcgtaaaa atgtggagaa 1800 tttatgaatc ccgaacaact tacgaatact ctcggttcag cagtttctgg agttgcgcaa 1860 ggattatcct ttctccctgg aatagcttcc ggagttttag gatatcttgg tgcacaaaag 1920 caaaatgcga ctgcgaagca aattgctaga gagcaaatgg cttttcagga gcgcatgtct 1980 aacacggcat accaacgtgc catggaagat atgaagaaag ctggccttaa ccctatgtta 2040 gctttttcta aaggcggtgc ttcttctcct gcaggagcgt catggtctcc gaataatcct 2100 gtagaaagtg cgatgaattc tggacttgcc gtgcaaagac ttacttatga acgtaagaaa 2160 atgcaggcag agcttcagaa tcttcgtgag cagaaccgtt tgattagaaa ccaagcaata 2220 cgtgaaggct atctcgcaga acgagataaa tatatgcgtg ttgctggagt tcctgtggcc 2280 actgagatgt tagataggac ttctggtctt atctcatctt cagctagggc atttaagaat 2340 cttttttcaa gaaaaggaag gtagatgttt aagtcggcat attccgaaaa aaaatctgta 2400 aagatgaagt tcacacagaa atctttgacg cagcaacaca acaaagatga gtgtgatatt 2460 aacaatatcg tcgcaaaact caacgctaca ggcgttttag agcacgtaga gcgacgatct 2520 ccacgttata tggactgtat ggaccctatg gagtattccg aggctctaaa cgtcgttatt 2580 gaggctcagg agcaatttga ctctttacca gccaaaattc gtgaacgttt tggaaatgat 2640 ccggaagcga tgctcgattt cttgagccgt gaagaaaatt atgaagaagc aaaggcgtta 2700 ggttttgttt atgaagatgg aacttctgga gcacctcaaa cactttttga agctggtcct 2760 aaagatgatc aaaatgtggc aaaccaagaa cctggattag cccaaaaatg agcaaaaaag 2820 tgtgcaaaaa atgcccaaaa aatggcccaa aaattgcccc caaaatcgga gcattttacg 2880 agagaaaaac cactagccta taacagtcta cttgatctgt tataggctag gtggtcggaa 2940 cttcaaggaa attttttaaa aactaagccc tatttagggc ccaaaattta agcttaaaat 3000 gaggttaaaa atggcacgaa gaagatacag acttccgcga cgtagaagtc gaagactttt 3060 ttcaagaact gcattaagga tgcatccaag aaataggctt cgaagaatta tgcgtggcgg 3120 cattaggttc tagttttgga cgttaaggaa atctttaagg ttatgctaaa ttagctgcta 3180 tgtataattt ggctcgtgac gaatgtcata ttcgcaccat ttaaaagttg tacacagcag 3240 ttgaaggctt ggatgttgat ttttaatgtc ttagccttca tttttggttt gttgtaactt 3300 ttaaatgagg cattaatgac gtgtgcctac cctttcgtat gttttataga ttctgataat 3360 caactctttt ttcccaaagg tgtgaagtct tctaaacctt gggataaagt ccgtgaatta 3420 aatgctttag agcaagcgca acccgaagag tatcgagttc gttgggttgt gaagccttgt 3480 cttaagtgta ggttttgcag agtgcagaat gcaaagattt ggtcgtatcg ttgcatgcac 3540 gaagcgtctt tatattctca gaattgtttt ttaactttga cttatgagga tcgtcatctt 3600 ccagagaatg gctctttggt aagagatcat ccgcgtttgt ttcttaggcg gttaagagag 3660 cacatttatc ctcataagat tcgttatttt ggatgtggtg aatatggatc gaaattacaa 3720 aggcctcatt atcatcttct tatttataat tacgattttc ctgataagaa gctcttgagt 3780 aagaagcgtg gaaatcctct ctttgtttct gagaagttga tgcagctttg gcctttcgga 3840 ttttctacag taggatctgt aacgcggcaa agtgcaggtt atgtagcgcg gtattctttg 3900 aagaaagtga atggagatag ttctcaagat cattatggtc aaagacttcc ggagtttctt 3960 atgtgttctc ttaaaccagg aataggagcg gattggtatg agaaatataa acgcgatgtc 4020 tatcctcagg attatcttgt tgtgcaagat aaagggaagt cttttaagac gcgtcctcca 4080 cgttactatg ataagttaca ttctcggttt gatccggaag aaatggaaga gatcaaacaa 4140 agacgcgtag agaaatttat ggctttgcct gagctaactc aagataaggc tgaggtgaag 4200 caatatattt tcaatgatcg tacgaagaga ctctttagag actatgagga ggagagttac 4260 taaacttttt taaaaaatag gagctttttt caatgaaagt ttttacagtg tttgatatta 4320 aaacggaaat ttatcagcag ccttttttta tgcaggctac gggagcggca atcagagcgt 4380 tttccgatat ggtaaatgag gatcctacga aaaatcaatt tgccgcgcat cctgaagatt 4440 acattctcta tgagattgga tcttacgatg actctactgg aactttcatt cccttagatg 4500 tgcctaaagc cttaggaaca ggcttggatt ttaagcacaa acagtaggga agat 4554 //