ID AJ238125; SV 1; linear; genomic DNA; STD; VRL; 4316 BP. XX AC AJ238125; XX DT 11-OCT-1999 (Rel. 61, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Avian endogenous retrovirus EAV-HP, complete genome, specific host: Gallus DE gallus domesticus(Chicken,line 21) XX KW gag gene; gag protein. XX OS Avian endogenous retrovirus EAV-HP OC Viruses; Retro-transcribing viruses; Retroviridae. XX RN [1] RP 1-4316 RA Sacco M.A.; RT ; RL Submitted (09-APR-1999) to the INSDC. RL Sacco M.A., Immunology and Pathology, Institute for Animal Health, Compton, RL Near Newbury, Berkshire, RG20 7NN, UNITED KINGDOM. XX RN [3] RX DOI; 10.1128/JVI.74.3.1296-1306.2000. RX PUBMED; 10627540. RA Sacco M.A., Flannery D.M., Howes K., Venugopal K.; RT "Avian endogenous retrovirus EAV-HP shares regions of identity with avian RT leukosis virus subgroup J and the avian retrotransposon ART-CH"; RL J. Virol. 74(3):1296-1306(2000). XX FH Key Location/Qualifiers FH FT source 1..4316 FT /organism="Avian endogenous retrovirus EAV-HP" FT /host="Gallus gallus domesticus(Chicken,line 21)" FT /mol_type="genomic DNA" FT /country="United Kingdom" FT /proviral FT /note="Chicken endogenous retrovirus EAV-HP2" FT /db_xref="taxon:93465" FT LTR 79..365 FT primer_bind 366..383 FT CDS 515..1234 FT /gene="gag" FT /product="truncated Gag protein" FT /db_xref="GOA:Q9QME3" FT /db_xref="HSSP:1A6S" FT /db_xref="InterPro:IPR004028" FT /db_xref="InterPro:IPR010999" FT /db_xref="InterPro:IPR012344" FT /db_xref="UniProtKB/TrEMBL:Q9QME3" FT /protein_id="CAB58117.1" FT /translation="MDQVIKVLVQFCKDYCGKSTPSRKEIATVLSLLNELGELDSPCHI FT LDSSRWDLLTSALCQRAMASQKATELKTWGLMLGALKAAREEDKLGAVMSGEGAPGSGS FT LEFCRTGAQTGAQTGAQTTAKKTATEREEDCEKDNEESQRLGGGVQRRRRPLLILLRCR FT RPRPTLSSRYILPWQRHRSRGRDHPQKERGRGDLSLLTGGRSKRKWHRKAWRQLIHSQL FT LSRRREAQSGSRWTQRG" FT LTR 3951..4266 XX SQ Sequence 4316 BP; 1063 A; 999 C; 1291 G; 963 T; 0 other; tcttgaacct tattaggttg tcatgagccc acttctccag cctgtccagg tgttgtatgc 60 gtagcgaggg aaacaaggtg tgttgtaggc gtagcgaggg aaacgaggtg tgacgcgtgc 120 aggttcctat gccacctgtg tgttatgcca cctgtgtgtg ccaagtgtaa cttcgtgatt 180 ggaggaaaca cttgtattta aacacgtagc ctatagcaat aaacgccatt tgcctcactt 240 actcctaggg tctgggtgag catctggccc cgacctggta aagggtcggt ttcgcccagc 300 agtaagccct acatgtggac agaggacgaa caccggacga gcgaacggag actacatgca 360 acaagtggtg accccgacgt gatctgtctg ctgagggtgg ctgcccggcg tgcccgtgac 420 gcggagaagg gcctgtgagg tggcggcagg tcgcgcacgg aagacgtatt gcggttaaga 480 gcctgcgagg tggcggcagg tcgcatacgt aacaatggac caagtcatta aggtacttgt 540 gcagttttgt aaggactact gtggaaaatc tactccttcc cggaaggaga tcgcgacagt 600 tttgtcgctg ttaaatgagc tgggggagct ggactctccc tgccatattt tggattcgag 660 taggtgggac ttgctcacct cggcgctatg ccagcgcgcc atggccagtc agaaggctac 720 ggaacttaaa acgtggggac tgatgttagg agcccttaag gcggccaggg aagaggacaa 780 acttggcgcg gtcatgagcg gggagggagc tccggggagc gggtctttgg agttttgcag 840 gaccggcgct cagaccggcg ctcagaccgg cgctcagacg acagcgaaaa aaacggcgac 900 ggagagagag gaagattgcg agaaggacaa cgaagagtcg cagaggctcg gggggggggt 960 gcaacggcgc cgacggcccc tcctaattct attgcgctgt cgccgccccc gccctaccct 1020 aagcagccgt tatatccttc cttggcaacg acatcggagc agggggcggg accatcccca 1080 aaaggaaagg gggaggggag acttaagctt actgactggg ggcagatcaa agaggaagtg 1140 gcacagaaag gcctggcggc aacttataca ctcccagttg ttgtctcgga ggagggaggc 1200 ccaatctggg tcccgttgga cccaaagggg gtagcaagga tgattgaggc agtagaaaag 1260 aaagggctga aatcgccatt gacgatgaat gcccttgagg ccctcacagc atcgggccca 1320 atgctgcctt atgatattga aaatttaatg cgcatggtgt tgaaaccagt gcagtatacg 1380 ctctggagag aggagtggca taccaaatta aaacaaatgc tgattacggc gcagggtgat 1440 caaagaaacc ccatatatgg gtccgatata cagagattaa cgggcaatgc accaggtctg 1500 ctgacccctc aagcacaagt ttgtcaactt agagcaggag agttgatagc gactacggac 1560 gctgcaatag acgcgttccg aaagcttgca aggagtgctg agcccactac tccgtggaca 1620 gagatcgcgc aaggccccac agagccgttt caggagtttg cagacagatt aattaaggca 1680 gtggaaggct cggatctgcc cagagcagtt cacggtcccg tcatcctgga ttgcttgtat 1740 cagaagtcca gtgaaggggt gcaggggatt ttgcgagcgg cgccgtggag gctccaaacc 1800 cctggtgagg ccatcaagta tgtcctagat aagcaaaagg cctgcccgtc tgtggcaggg 1860 gaggtagctg cggcggtagc aggagtgatg atggcctgta gggaggcgga ccatcgtagt 1920 gcggaccgac agttaggacc ttgctttaaa tgtggccagt tgggccatat tagggcccaa 1980 tgcagaatgg gcatgggtgg aggtgtaaca tgtcagcagt gcgggcggag gggtcataca 2040 gcaccacaat gcagggcccg taggcctcca cgccagggaa ataacaacgg gagaccgtcc 2100 acgcacggca acttcatttc tcgatcggtg cgggcccctc acctaagttt acccatggcg 2160 gcgctgtctc taagtaccca tgagcgccct ctggtgaaag ccactatttc ttgcaccaac 2220 ctcctgccgg attttcaagg ccctcgatct atctttgtca ctgccctcat agattccggc 2280 gccgacgtta ctgtggtcgc ggaaacagaa tggccatcct cgtggcccgc ggaggcctcg 2340 cagtctatta tgggggttgg aggggcgacc ccctcacgcc ggtctaccaa tgaggtacaa 2400 ggggttgtga ttaacaggga tggctcctta gagaaaccgg cgttgcttac accattggtg 2460 gcgcgtgtcc ccggaactct tctggggcgg gatttcttgc gacagatagg cattccacag 2520 tatcctctga acacctttaa gggatacgtc actaatgtta ctgcttgcga taacgatgcc 2580 gatttagcca gccaaacagc atgcttgata aaggctctaa atacaactct cccttgggac 2640 ccccaagaat tggatatttt agggtcccag atgatcaaga atggaacaac acgtacgtgt 2700 gttacctttg gttcggtgtg ctataaagag aacaatcgca gtagagtctg tcacaatttt 2760 gatgggaatt ttaatgggac tggtggggcg gaagcagaat tgcgtgactt catagcaaaa 2820 tggaaaagtg atgaccttct tataaggccc tatgtcaacc aatcatggac gatggtaagt 2880 ccaataaacg tagagagttt ttcaataagt cgtagatatt gtggattcac cagtaacgag 2940 actcgttact atagagggga cctttctaat tggtgtagtt caaaaagggg aaaatggtca 3000 gcggggtaca gcaacgggac aaaatgttcc agcaacacga cgggttgcgg tggtaattgc 3060 acgacggaat ggaattatta tgcatatggg tttaccttcg ggaaacagcc agaggtgttg 3120 tggaacaatg ggactgctaa ggcactcccc ccaggtattt tcttgatttg tggggacagg 3180 gcttggcaag gcgtcccgcg taatgccttg ggagggccct gttatctagg acaattgact 3240 atgctctctc ccaactttac cacctggata acatatgggc cgaacattac gggtcaccgc 3300 cgtagcaggc gctcgctgag tcgtctctcg cctgactgcg gtgatgaact acagctatgg 3360 agcgtgacag cccggatatt tgcttctttc tttgctcctg gtatagcagc agcacaggcc 3420 ttaaaggaga tcgaacgatt ggcatgttgg tcggttaagc aagcgaattt aacatcatta 3480 atattgaatg cgatgctgga ggacacgagc agcatccggc acgcagtgtt gcagaatcga 3540 gcagccatcg atttcttact cctggcgcag ggacacgggt gtcaagatgt ggaagggatg 3600 tgttgcttca atctcagcga tcacagtgag tccattcaca aggcgctcca agccatgaag 3660 gaacatacag agaagatacg ggtggaagat gatcccatag gggattggtt tacgcgcacg 3720 tttggtgatc taggaaggtg gctcgcgaaa ggtgttaaga cgctactgtt tgccttgctt 3780 gtcatagcct gtctattagc tatcattcca tgtataatca agtgctttca ggattgtcta 3840 tcgagaacaa tgaatcagtt tatggatgaa cgcataaaat atcatagaat tagggagcag 3900 ctgtaggttc cgaacgcgat gtgacgggag ctatcggcat agggaggggg agatgttgta 3960 tgcgtagcga gggaaacgag gtgtgttgta ggcgtagcga gggaaacgag gtgtgacgcg 4020 tgcaggttcc tatgccacct gtgtgttatg ccacctgtgt gtgccaagtg taacttcgtg 4080 attggaggaa acacttgtat ttaaacacgt agcctatagc aataaacgcc atttgcctca 4140 cttactcctg gggtctgggt gagcatctgg ccccgacctg gtaaagggtc ggtttcgccc 4200 agcagtaagc cctacatgtg gacagaggac gaacaccgga cgagcgaacg gagactacgt 4260 gcaacaccag gtgcctctgt atggctccct ttcctttcag tgtatcgact gcactg 4316 //