ID AJ225333; SV 1; circular; genomic DNA; STD; PRO; 7598 BP. XX AC AJ225333; XX DT 15-APR-1998 (Rel. 55, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 3) XX DE Acidianus ambivalens plasmid pDL10 XX KW copG gene; copy number control protein; dbpA gene; DNA-binding protein; KW pepG gene; pepH gene; pepI gene; pepJ gene; pepK gene; pepM gene; primase; KW rep gene; repA gene; replication initiator protein. XX OS Acidianus ambivalens OC Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; OC Acidianus. OG Plasmid pDL10 XX RN [1] RP 1-7598 RX PUBMED; 10430561. RA Kletzin A., Lieke A., Urich T., Charlebois R.L., Sensen C.W.; RT "Molecular analysis of pDL10 from Acidianus ambivalens reveals a family of RT related plasmids from extremely thermophilic and acidophilic archaea"; RL Genetics 152(4):1307-1314(1999). XX RN [2] RP 1-7598 RA Kletzin A.; RT ; RL Submitted (12-JAN-1998) to the INSDC. RL Institut fuer Mikrobiologie, Technische Universitaet Darmstadt, RL Schnittspahnstrasse 10, Darmstadt 64287, Germany. XX DR StrainInfo; 301699; 1. XX FH Key Location/Qualifiers FH FT source 1..7598 FT /organism="Acidianus ambivalens" FT /plasmid="pDL10" FT /strain="Lei 10" FT /mol_type="genomic DNA" FT /db_xref="taxon:2283" FT promoter 252..259 FT /gene="pepFGHI" FT /note="box A promotor motif" FT CDS 278..961 FT /transl_table=11 FT /gene="pepM" FT /product="PepF protein" FT /db_xref="UniProtKB/TrEMBL:O57695" FT /protein_id="CAA12518.1" FT /translation="MSQTVYAINLTHEETANLLQYHYLLYRYEHLVNTYSQTVELVIRE FT HMKNFIPMRAKLLISLFKMLKNGIIPPTVDDLKDYAYFLLIKNDSGYVVNNKKYSFLYD FT YLETELPGLHAFNVIHTSPNKRISLHEEEKAYLDKFKEEHSFETQEDAIIDLLSTTYVF FT SIWRTVVNLTENNVNDVELQVFDELGEFVLLFGVLKNNNKVKILIEFFPFFTSNKFTEV FT IENVI" FT CDS 951..1358 FT /transl_table=11 FT /gene="pepG" FT /product="hypothetical PepG protein" FT /db_xref="UniProtKB/TrEMBL:O57696" FT /protein_id="CAA12519.1" FT /translation="MSSEQHASKLPIKSRYDWNELNRAKEAVTFFEAVIQPSLERDGIS FT PTVIDSIKVSYYRDILNIITQKLAQTYASINIETAVKIIDEELPKLLKESSPSVDIRGI FT INAWDFVKKVLTGGDKGEQTAKGSNSSSSNK" FT CDS 1312..1701 FT /transl_table=11 FT /gene="pepH" FT /product="hypothetical PepH protein" FT /db_xref="UniProtKB/TrEMBL:O57697" FT /protein_id="CAA12520.1" FT /translation="MSKRLKDLIPPPQTNEETKYKYSYEDFKNAFGDFANFDTLSHLRV FT MQYLKQAQTREEQDIFTLIQRVLALQKELKTPGNEEKESAEAIKTLNFVLDVIKQLNDP FT RVIDLVKRIVDALATRAAAAGGGNK" FT CDS 1698..1916 FT /transl_table=11 FT /gene="pepI" FT /product="hypothetical Pep I protein" FT /db_xref="UniProtKB/TrEMBL:O57698" FT /protein_id="CAA12521.1" FT /translation="MNKQKLEKFANLELDLLSVLLSLSDDDVDNLINELENILQKYKEK FT AIETDVLQLLNKLSDEEKRKLIEKLLK" FT terminator 1925..>7598 FT /gene="pepFGHI" FT promoter 2054..2060 FT /gene="pepJK" FT /note="box A promoter motif" FT CDS 2092..2274 FT /transl_table=11 FT /gene="pepJ" FT /product="hypothetical PepJ protein" FT /db_xref="UniProtKB/TrEMBL:O57699" FT /protein_id="CAA12522.1" FT /translation="MVCEFLPPKYKAKLVDLAKPVELAEAGYTLQSAYKIKQKKVISDE FT KCEELVKILGERLRP" FT CDS 2350..2640 FT /transl_table=11 FT /gene="pepK" FT /product="PepK protein" FT /db_xref="UniProtKB/TrEMBL:O57700" FT /protein_id="CAA12523.1" FT /translation="MDCSKINEIYNKLDEILQLLKSKKKTPRDLDILYDKMKDSLGYVR FT IDNLRKELGMSLEEFLSTFSDHIEKHYELIPGGDEGFIRNGILYGIIRRKH" FT terminator 2653..2664 FT /gene="pepJK" FT misc_feature 2853..2877 FT /gene="sso" FT /function="putative single strand origin" FT /note="first perfect 26mer palindrome" FT misc_feature 3064..3089 FT /gene="sso" FT /function="putative single strand origin" FT /note="second perfect 26mer palindrome" FT promoter 3338..3344 FT /gene="dbpA" FT /note="box A promoter motif" FT CDS 3366..3587 FT /transl_table=11 FT /gene="dbpA" FT /product="DNA-binding protein" FT /db_xref="GOA:O57701" FT /db_xref="InterPro:IPR008848" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:O57701" FT /protein_id="CAA12524.1" FT /translation="MEKLQNTEKILIILSHGCATLERLEEKTGIPKKELLVYLTRLYNR FT GLIYRKWQKYGGKKFREYCLKYREELIS" FT promoter 3656..3661 FT /gene="copG/repA" FT /note="box A promoter motif" FT CDS 3679..3894 FT /transl_table=11 FT /gene="copG" FT /product="copy number control protein" FT /db_xref="UniProtKB/TrEMBL:O57702" FT /protein_id="CAA12525.1" FT /translation="MKKKSLQSKLDNPGYKAFCSKEAKSITRSCPFKKKRCFTDATVCG FT LIGYYADCPLKIDELKATTKEQVIII" FT CDS 3907..6636 FT /transl_table=11 FT /gene="repA" FT /product="primase" FT /function="replication initiator protein" FT /db_xref="InterPro:IPR004968" FT /db_xref="InterPro:IPR006500" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR014818" FT /db_xref="InterPro:IPR015330" FT /db_xref="UniProtKB/TrEMBL:O57703" FT /protein_id="CAA12526.1" FT /translation="MDDLKLNYAKWFIKNGAAIFPIDPNTKKPVVKEWQRYSHEPLTDE FT EKQKFLEMISQGYNYAVPGGQKNLVILDFEDKELLKAWIGEETLNKICSKTLCVTTPHG FT GLHIYLIVDEVPPHKFNPVFVKDGKGVADLQSFDSYVLGPGSCINHKYCSSEKCKWKGK FT DYTTCYIPVNNTGIGRPDKGLKNFLKWLADKGKKLGIELSGSARAWVEGKQEKSDSHTE FT KDLEKLKEEMAKYNRFKGKTVDAIRSEVCQSIKKSLDNAKSDKAKAMLNTAFQVVCQGK FT KYSDLGIDRSRGDWHVLKTLLSHGVTDIDMLQQLIPNDSKVFAPKWDKYFVHTLMKAWN FT EVKPFLTVLKNAKKKKAKELKEEFAEALSQYIIRKYHIITFIQKHGNGESIVGIFRWSK FT KKGIYEPVDKTLKKIIRHEIMRIKELFPKSEEEGKVTFYEIKSGLVKLVYDEIMDLTLT FT EYDDDNIPLRIAFENYTLEWSTDKKENIFKLIPANERTEEHYSFHYIPHKIRDEVFNNT FT PLPFQVSELEDLARKLCPRSLDTFKQWAGDKWITLFEIIGYTLYPATKIKLAFMLLGPR FT DSGKSTFLQLLKKILGKHNTVSIRVKELFDSNNRFVMGYLFHKLANLTAETKEYTINDI FT DRFKTLTGGDQVTSDVKFNGPITFTPYAKIIIASNKLPNVSDKNDMAFWRRWLIIEFPN FT TFPNDDNWFRQTFTEEEIEGILTVSILAFARVIINGKFDYQQTPEEVRGLWLNNIDSVW FT SFIKTYVEKGIITLDPRNADLWVPRKELYNLYKEYCLDNGFPGVSLRTFANKLNKYFGI FT TSMKKNFGKKPDGTDDRKRCFVGITINREAKQAIEADMINEVEEFIEYVKKNNHAKKEV FT LGNCQDFGDEKKANRFVSWCMKKNMCYQRGVDTWEISL" FT rep_origin 6640..6931 FT /direction=BOTH FT /gene="rep" FT /note="putative double strand origin of replication for FT pDL10" FT stem_loop 6690..6802 FT /function="double strand origin" FT /note="extended stem-loop structurally conserved in pRN1" FT terminator complement(7146..7157) FT /gene="pepM" FT promoter complement(7551..7559) FT /gene="pepM" FT /note="box A promoter motif" FT CDS complement(7157..7564) FT /transl_table=11 FT /gene="pepM" FT /product="PepM protein" FT /db_xref="UniProtKB/TrEMBL:O57704" FT /protein_id="CAA12527.1" FT /translation="MSCFIKPNVSIHLMARKRKHSILIYGPEGAAKKTVEDLKKKVERA FT EVEPAVKHEWEDRYFSGIANYATSPERTKAAEEKLTVWYEVLMRSLAPKYAEDAAKAKA FT EYYRELARKMKKEENPAEEAEEEYENIFKPI" FT promoter complement(7586..7595) FT /gene="pepM" FT /note="box A promoter motif" XX SQ Sequence 7598 BP; 2558 A; 1319 C; 1566 G; 2155 T; 0 other; ggggggtggg tccctaaatt ttcgtgattt tacgctctta caggctaatt ttagcctgga 60 tttgccctta cttaccttac ttcgcgtgct ttctctccat cagaacatac ttgttttcta 120 tttattgcgt actgaagttt atattttcga gctgtaagcc cgtgctatat aaggacaaat 180 agaagagaaa tagaacgaga aagaatttta tctcatctac agtgaaacaa attcgaaaat 240 gaatcagatt tattaagttc agtgtatcga aaatatcgtg agtcaaacag tctatgcaat 300 aaatctaaca cacgaagaaa ctgcaaattt gttacaatat cattaccttc tgtatagata 360 tgagcatctc gtaaatacct attctcaaac agtcgaatta gtaattcgcg aacatatgaa 420 aaattttatt cccatgcgtg ctaaactgtt aatatcactc tttaagatgt taaaaaatgg 480 tattataccg ccaactgtgg acgatctcaa agattatgca tattttttac tcataaagaa 540 tgacagcggt tatgttgtta acaataagaa gtactctttt ctgtatgatt acctggagac 600 cgaactacca ggtctgcacg cttttaacgt cattcatact tcgccaaaca agagaatttc 660 tctccatgaa gaagagaaag catacctgga caagtttaaa gaagagcatt ctttcgaaac 720 ccaggaagac gcaataatag atttgctatc gacaacttac gtgttctcga tatggagaac 780 ggtagtaaac ttaacggaga acaatgtaaa cgacgtggag ctccaggtgt ttgatgagtt 840 aggagaattt gtacttctat tcggcgtgct aaagaataat aataaagtca agatactaat 900 cgaatttttc ccgtttttca cttcaaataa attcacggaa gtgatagaaa atgtcatctg 960 aacaacacgc ttccaaatta ccaattaagt cacgttacga ctggaatgag ctcaaccgtg 1020 ctaaggaagc agtaaccttt ttcgaggctg ttatacaacc ttctctagaa agagacggaa 1080 tttcgccaac ggtaatagat agtattaagg tttcatacta ccgtgatatc ttgaatatca 1140 taactcaaaa gttagctcaa acctatgctt ctattaatat agaaactgca gtgaaaatta 1200 tagacgaaga acttcctaag ttgcttaagg aatcttcgcc ttctgttgat atacgaggaa 1260 taattaacgc gtgggatttc gttaagaaag ttttaacagg aggtgataaa ggtgagcaaa 1320 cggctaaagg atctaattcc tcctcctcaa acaaatgaag aaactaaata taagtatagt 1380 tatgaagatt tcaagaacgc atttggtgac tttgcaaact tcgacacact ttcacatctt 1440 cgcgtgatgc aatatttgaa acaggcacag accagggaag agcaagatat atttacatta 1500 attcagagag ttctagcttt acagaaggaa ctgaaaacac ctggtaatga agaaaaagaa 1560 tcagcagagg caatcaagac actaaacttt gtattggatg ttatcaagca attgaacgat 1620 ccacgcgtga tagacctggt aaagaggatt gtggacgctt tagctactcg agcagctgct 1680 gcgggtggtg gtaataaatg aacaaacaga aattggaaaa gtttgcaaat ctggaattag 1740 atttgcttag cgttttacta tcattatccg acgacgacgt tgacaatcta ataaacgaac 1800 ttgaaaacat tctacaaaag tataaggaaa aagcgataga aacggacgtg cttcaactgc 1860 tgaacaaact ttcagatgaa gagaaaagaa agttaattga aaagttatta aagtgagaac 1920 aattttttat taatttgcac acaagcaata atattactca ataagccgtg aactgcacac 1980 gagcaagggg agtatttaat aacagtttat gtgcacacct catttttagg aattggggtt 2040 ttccaaaaga tttataaacc cttgagacaa aattagaact ggggagttcc aatggtttgt 2100 gagtttcttc ctccaaaata caaagcaaag ttagtagatc tagctaaacc cgtggaactt 2160 gctgaagcgg gctatacgtt acaatcggcc tacaaaataa aacagaagaa ggtgataagt 2220 gacgagaagt gtgaggaact agttaaaata ctaggagaaa gactgcgccc gtgatacaag 2280 aagcgttgaa cgagttcata tctcaaataa acaaactagg aattactgcg tgctgctagc 2340 agcagtttaa tggactgtag caaaattaat gaaatttata ataagttaga tgagattctg 2400 cagctgctaa aaagtaagaa gaagacgcca cgtgacctgg acattttata cgataaaatg 2460 aaggactcac ttggctacgt taggatagat aatttgagga aggaattagg aatgagttta 2520 gaggaattct tatcaacatt cagtgaccat atagagaaac actacgaatt aatacccggt 2580 ggagatgaag ggttcatacg aaacgggatt ttgtacggaa taattaggcg taagcattag 2640 aaatggggat ttcctttttt tggaattctt gttttcctaa atctagagtc ttctctctct 2700 tttcttcttt cttcttagag aagtctagat tcttctctct agaacacggg gtctagaagc 2760 cgtggttaat ccttgatagc tgcaaatatg cagctctgct cgatgcagca ctaattactc 2820 tcttcaattt gtttactttc ggtctcacta aattgactcg catgcgagtc aattttgctc 2880 tcttctgttt tatttttact ttctatatca aatttcacgc caggtggcga gaatttttct 2940 ccagaagaga gacaaaatta cgggccaggt ggccgtattt tgtccaggat aacaataaaa 3000 tcagagaata gagtaaacta cggggcaaat gctccgtatt ttgcccagaa tagcgaaaac 3060 aaatactagc actagtgcta gtattttgtt catttttaat ttcttttgtt tattctacct 3120 ggatcccagg gtgtttaagt tgtaagatat agctatatta gctgtaccta tgtttaatcc 3180 tacttggatc ccagggtgtt tttctcctaa gagttagctc tcacggttac gtaaacagta 3240 ttaacaaata tgttaatgct acagggtgag agttagaaag ctgctttttg cagcgctatt 3300 aggtaattca catattactt aatcctgttt aaggtttatt aaggagaatt acacgttaaa 3360 aaaatatgga gaaactccaa aacactgaaa aaattttgat cattttatct cacggttgtg 3420 caaccttgga aagactggaa gaaaaaacag gtatcccaaa gaaggaactg cttgtttatc 3480 taaccaggtt atacaataga gggcttattt atagaaagtg gcaaaagtat ggcggaaaga 3540 agttcagaga atattgtctt aaataccggg aagaactgat aagttaggct tgtcatacca 3600 aaaatcgatc ggtgtgttta tatgtgccat acgcataaat attaacgtat gctttaaatt 3660 taagcggggc ggggagatat gaagaaaaag agtctacagt ctaaattaga taatccaggt 3720 tataaagctt tttgttcaaa agaagccaaa agtattacac gttcttgtcc atttaagaag 3780 aagcgctgct ttacagacgc taccgtttgt ggattaatag ggtattacgc agactgtccg 3840 ctaaagatag acgaattgaa agcaactacg aaagaacagg taatcattat ctgaaggtga 3900 gtagctgtgg atgatttaaa gctaaattac gccaagtggt tcataaaaaa cggggctgct 3960 atttttccaa tcgacccaaa cactaagaag cccgtggtga aagaatggca aaggtatagt 4020 cacgagccgt tgactgatga agagaaacag aaattcctag agatgattag tcaaggctat 4080 aattacgccg tgcctggcgg acaaaagaac ttagtaattt tagatttcga agacaaagaa 4140 ctcctgaaag cgtggatagg agaagaaaca cttaacaaaa tttgcagcaa aacgctgtgc 4200 gttaccacgc ctcatggcgg cttgcacata taccttatag ttgatgaagt accgccacac 4260 aagtttaacc ctgtatttgt caaagacggt aaaggagtag ctgatttaca gagcttcgac 4320 tcttatgtac taggcccagg ctcttgcatt aatcataagt attgtagtag tgagaaatgt 4380 aaatggaaag gtaaagatta tactacatgc tatattccag taaataatac tggaatagga 4440 agaccggaca aggggctcaa aaacttccta aagtggttag ctgataaggg caaaaaacta 4500 ggcatagaat taagtggttc agcacgggca tgggtggaag gaaagcaaga gaagtctgat 4560 tcccatacgg aaaaagacct ggaaaagctc aaagaagaaa tggcgaaata taaccgcttt 4620 aaggggaaaa ctgtagacgc aataagatct gaagtttgtc agagtattaa gaaaagcctg 4680 gacaatgcca agtctgataa ggcaaaagcc atgcttaaca cagctttcca ggttgtttgt 4740 caaggcaaga agtacagtga cttaggaatc gatagaagta ggggggattg gcatgtgcta 4800 aaaacactgt tgagccatgg agtcacagac atagatatgt tacaacaatt gatacctaat 4860 gattccaaag ttttcgcccc caaatgggac aagtattttg tgcatacgtt aatgaaagcc 4920 tggaatgaag taaagccatt cctaaccgtg ttgaagaatg caaagaagaa gaaggccaaa 4980 gagctcaaag aagagtttgc tgaagcactt tcgcaataca ttataaggaa ataccacatc 5040 atcacgttca ttcaaaaaca cggaaatggc gaatcgattg taggaatatt tcgatggagt 5100 aagaaaaagg gaatctatga gccagttgat aaaacgctta agaagattat tagacatgag 5160 atcatgcgta tcaaggagtt attccctaag tcagaagaag aaggcaaagt aacgttctat 5220 gagattaaga gcggtctagt taaactggta tatgatgaaa ttatggactt aacgctgaca 5280 gagtatgatg atgataatat cccactaagg atagcgtttg agaattatac attggagtgg 5340 tcaacagaca agaaagagaa tatcttcaaa ctaattcccg caaatgaacg cacagaggaa 5400 cattattcat tccattacat tccgcataag atccgtgatg aagtatttaa taacacgccg 5460 ttgccattcc aggtcagtga gttagaagac ttagcccgta aactatgccc caggtcacta 5520 gatactttca aacaatgggc gggtgacaag tggatcacat tgtttgagat aataggatat 5580 acgttatacc ccgctacaaa gattaagtta gcgtttatgt tactagggcc ccgagacagt 5640 ggaaagtcaa cattcttaca gttattgaag aagatattgg gcaaacataa cacggttagc 5700 attcgtgtta aagagctgtt cgactcaaac aataggtttg tgatggggta cctattccac 5760 aagttagcaa atctcacggc tgaaactaag gagtacacta taaatgatat tgacagattc 5820 aagacattaa caggtgggga tcaagttacg agtgatgtca agtttaatgg gccaatcacg 5880 ttcactcctt acgcaaagat catcattgca agtaacaagt taccaaacgt ttcggataag 5940 aatgacatgg ccttttggag aagatggttg attatagaat tcccgaatac ttttcctaat 6000 gatgataact ggttcaggca aactttcaca gaagaggaaa tagaaggtat cctaacagta 6060 tcgattttgg cgtttgcccg cgtaatcatt aacggaaagt ttgactacca acagactcca 6120 gaagaggtaa gaggcttatg gctcaacaac attgacagcg tatggagttt catcaaaact 6180 tatgtggaga agggcatcat cacgctggat ccacgaaatg ccgacttatg ggtacctaga 6240 aaggagctat ataatttata taaggaatat tgcctcgata atgggttccc tggagtatcg 6300 ctgagaacgt ttgccaataa gctcaacaaa tactttggaa tcacgagtat gaagaagaat 6360 ttcggaaaga agcctgatgg tacagatgat agaaaaagat gctttgtagg tattacaata 6420 aacagagagg ctaagcaggc gattgaagct gatatgataa atgaagtcga agagttcatt 6480 gagtatgtga agaagaacaa ccacgcaaaa aaggaagttt tgggaaattg ccaagatttt 6540 ggggatgaga agaaagctaa caggtttgtg tcatggtgta tgaagaagaa catgtgttac 6600 caaagaggag ttgacacatg ggaaatctct ttgtaacacg cggggttttc aattttttga 6660 aattcaattt ttaaactgta atgtacaaat aaggtaccga aagtccaaga acatggggga 6720 tatattttta acacaatttt tttgcagact tttttggggt aaaaataaac cctaaaacct 6780 ggactttcga tcccttattc aaatataccg tgataatatt acaatgctca tgttacaatt 6840 gaatgcaaaa tactgaatat gtctaacgta ttttctcttc atagagccgt gctatatcca 6900 tattttatat tataatgcag ctgcacatga gtactacaaa tatgcagctt tggaattggg 6960 gaattccaaa aaactgggaa tcctccggaa atctccattc cctctaaaaa gtctacatct 7020 gcagcagctg catacagtac gggggccact ctatattata acaaaaattt ctctcttctg 7080 tttcacaaaa ctgtacgctc cagcgtgcag tttagttttc ttctgtttta ttttttatgt 7140 tggaaaaaaa aaaagattag attggcttga agatattttc gtactcttct tcggcttctt 7200 ctgcagggtt ttcttctttc ttcattttac gggccaactc gcggtaatac tcggctttcg 7260 ctttggccgc atcttccgca tattttggtg ctaaacttct cattaatact tcataccata 7320 ccgttaattt ctcctctgca gctttggttc tttcggggct tgttgcatag ttagctatac 7380 cagaaaaata cctatcttcc cactcgtgtt ttacagctgg ctcaacttct gctctctcca 7440 ctttcttctt cagatcctca acagtcttct tggcagctcc ttctggacca tatataagga 7500 tagaatgctt tctctttctg gccatcaggt gaatggatac attaggcttt ataaaacaag 7560 acaaacacgc atttttacga gttttttata aataaccc 7598 //