ID AF538869; SV 1; circular; genomic DNA; STD; PRO; 3661 BP. XX AC AF538869; XX PR Project:PRJNA18773; XX DT 20-SEP-2002 (Rel. 73, Created) DT 11-MAR-2007 (Rel. 91, Last updated, Version 2) XX DE Bifidobacterium longum DJO10A plasmid pDOJH10S, complete sequence. XX KW . XX OS Bifidobacterium longum DJO10A OC Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; OC Bifidobacteriaceae; Bifidobacterium. OG Plasmid pDOJH10S XX RN [1] RP 1-3661 RX DOI; 10.1128/AEM.72.1.527-535.2006. RX PUBMED; 16391088. RA Lee J.H., O'Sullivan D.J.; RT "Sequence analysis of two cryptic plasmids from Bifidobacterium longum RT DJO10A and construction of a shuttle cloning vector"; RL Appl. Environ. Microbiol. 72(1):527-535(2006). XX RN [2] RP 1-3661 RA Lee J.H., Halgerson J.S., O'Sullivan D.J.; RT ; RL Submitted (18-AUG-2002) to the INSDC. RL Food Science and Nutrition, University of Minnesota, 262 FScN, 1334 Eckles RL Ave, St. Paul, MN 55108, USA XX DR GR; AF538869_GR. XX FH Key Location/Qualifiers FH FT source 1..3661 FT /organism="Bifidobacterium longum DJO10A" FT /plasmid="pDOJH10S" FT /strain="DJO10A" FT /mol_type="genomic DNA" FT /db_xref="taxon:205913" FT gene join(3626..3661,1..876) FT /gene="rep" FT /locus_tag="BLD_p0011" FT CDS join(3626..3661,1..876) FT /codon_start=1 FT /transl_table=11 FT /gene="rep" FT /locus_tag="BLD_p0011" FT /product="Rep" FT /note="putative replication protein; RepA; theta replicase; FT similar to replication protein of Rhodococcus rhodochrous FT plasmid pRC4 encoded by GenBank Accession Number AB040101" FT /db_xref="InterPro:IPR004322" FT /db_xref="InterPro:IPR014820" FT /db_xref="UniProtKB/TrEMBL:Q8GN66" FT /protein_id="AAN15160.1" FT /translation="MSEICRIIVAMSTELREQWEQLYLPLRPLCTNDFIEGVYRQPRAK FT ALEGYRYIEANPKTVSDLLVVDIDDANARAMALWEHEGMLPNVIVENPRNGHAHAVWAL FT AAPFSRTEYARRKPLALAAAVTEGLRRSCDGDKGYSGLMTKNPLHEAWNSELVTDHLYG FT LDELREALEESGDMPPASWKRTKRRNVVGLGRNCHLFETARTWAYREVRHHWGDSEGLR FT LAISAEAHEMNAELFPEPLAWSEVEQIAKSIHKWIVTQSRMWRDGPTVYEATFITVQSA FT RGKKSGKARRETFELFASEEMT" FT gene complement(1265..2743) FT /gene="mob" FT /locus_tag="BLD_p0012" FT CDS complement(1265..2743) FT /codon_start=1 FT /transl_table=11 FT /gene="mob" FT /locus_tag="BLD_p0012" FT /product="Mob" FT /note="putative mobilization protein; MobB; similar to FT mobilization protein of Bifidobacterium longum pKJ36 FT encoded by GenBank Accession Number AF139129" FT /db_xref="GOA:Q8GN65" FT /db_xref="InterPro:IPR005053" FT /db_xref="UniProtKB/TrEMBL:Q8GN65" FT /protein_id="AAN15161.1" FT /translation="MAIYSLNISSASSAVAALSYITSMRVRDDARGETYSGFGRRERVA FT HVATLLPEGAPSGYADPERLFNAAQAAERGTGVAAKKIMVALPRELDEGQRVLAVERFI FT RENLTAGGYAATYAIHLDREGRNPHAHILVANRRIDPRTGEWARLKQKTTFALDGNGQR FT IPVIDPKTGVQKVDKRNRKQWKRVTVSENPLGTKAMLLSMRESWADVCNGLLPEGVRID FT HRSLEEQGIDRVPTIHEGYASREMEKRGQPSDRMAINREIGASNRDLAEGDAAVDDLRA FT HQSELRRLLRDMADRAVQAFDRMLESIGHGVDPSDAVEAMRDRDGINLMIPRNAKDSDR FT PVWHAWLYDRHEWAAIPSHVLREGMRTVGRVRAAIGTALHRWRDAQAARRERIARSTPA FT QAPRLADVARQAREDAGQPAHQPRPVRKPEQQPEQQRERPVSLAAAAKEASKQLKREQQ FT QEPEPEPALEWNPWDPADPMNLGMGGSQGYGLGL" FT gene 3103..3558 FT /locus_tag="BLD_p0013" FT CDS 3103..3558 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="BLD_p0013" FT /product="unknown" FT /note="ORFI" FT /db_xref="UniProtKB/TrEMBL:Q8GN64" FT /protein_id="AAN15162.1" FT /translation="MPKSFAQQIEDDENKIKRIREHQRMVRAKQAKQERNARTKRLVET FT GAIVEKAHGGAYDDEGRQTFSDGLNGIISVYDPSRGGNVDMRVIDVIDRRIPRLPRSET FT TTGTAAAASRTVQATAPQPAHAQPQSFTPNPQRIEHRTGAQQPDRWA" XX SQ Sequence 3661 BP; 653 A; 1199 C; 1224 G; 585 T; 0 other; actgaacttc gtgagcagtg ggagcagctt tacctgccgc tgcgcccgct gtgcacgaac 60 gacttcatcg agggcgtgta ccggcagccc agggcgaagg cgctggaggg ctaccggtac 120 atcgaggcga accccaagac cgtcagcgac ctgctcgtgg tcgacatcga cgacgcgaac 180 gcccgcgcga tggccctatg ggagcatgag gggatgctgc ccaacgtgat cgtggagaac 240 ccgagaaacg gccacgcgca cgccgtgtgg gcgctggccg ccccgttcag tcgcaccgaa 300 tacgcgcggc gcaagccgct cgccctggcc gcggcggtca cggaggggct gcgccgctcg 360 tgcgacgggg acaagggata ttcggggctg atgaccaaga acccgctgca cgaggcgtgg 420 aacagcgaac tggtcaccga tcacctgtac gggctggacg aactgcgcga ggcgctggag 480 gagtccgggg acatgccgcc ggcctcgtgg aagcgcacga aacggcgcaa cgtggtcgga 540 ttgggccgca actgccatct gttcgagacg gcgcgcacat gggcgtacag ggaggtgcgc 600 caccactggg gagacagcga ggggctgcgg ctggccatct cggccgaggc gcacgaaatg 660 aacgccgaac tgttccccga gccactggca tggtcggagg tcgagcagat cgccaagagc 720 atccacaagt ggatcgtcac ccaaagccgc atgtggcgcg acggccccac cgtctacgag 780 gcgacattca tcaccgtcca aagcgcccga gggaaaaagt caggcaaggc cagacgagaa 840 acattcgaac tattcgcgag cgaggagatg acgtaatggt tattcaaacg attcgcaaga 900 agcgtcccct gcccgcgcgg caactcgctg aaatgtatga cgttactcca cgcaccatca 960 tgagatgggc agcacagacc cgtgctgatt ggattgatga acaggcggct ggacgcgagg 1020 cgatccgcgc atatcacgat gatgatggac attcatggac tcaaaccgcc aagcatttcc 1080 acctttctct gtccacggtg aaagaacgcg cataccgtgc ccgtaaggag cgtgccgccg 1140 aggccgagga aaaagccaga aatgaggtcc acaagaacga ggtgccgctt ttcgactagg 1200 ctggcgcttg accccggtgc ctcccgtgca attggagcgc ggcaagggcc agggtctttc 1260 acgtctagag gccgaggccg tagccttggc tgccgcccat gccgaggttc atggggtcgg 1320 ccgggtccca cgggttccat tcgagtgccg gctctggttc cggctcctgc tgttgctccc 1380 gtttgagctg tttgctggcc tccttggccg ctgcggcgag gctcacgggc cgctcccgct 1440 gctgctcggg ctgttgctcg ggcttcctga cgggacgggg ctggtgtgcc ggttgtcccg 1500 cgtcctcgcg cgcctgacgg gccacgtcag ccaagcgggg cgcctgggcg ggcgtggaac 1560 gggcgatccg ctcgcgtctg gcggcctgcg cgtcccgcca acgatgcagg gccgtgccga 1620 tggcggcgcg gacgcggccc acagtgcgca ttccctcccg caggacgtgg gagggaatgg 1680 ccgcccactc gtgccggtcg tatagccagg catgccagac gggacggtcg gaatccttgg 1740 cgttccgggg aatcatgagg ttgatgccgt cccggtcccg catcgcctcc accgcgtcgg 1800 acgggtccac gccgtgtccg atgctctcca gcatccggtc gaacgcttgg acggcgcggt 1860 cggccatgtc gcgcaggagc cggcggagtt cggactggtg cgcgcgcagg tcgtccacgg 1920 cagcgtcgcc ttcggccagg tcgcggttcg aggctccgat ctcgcggttg atggccatgc 1980 ggtcggacgg ctggcctcgt ttctccatct cccggctggc gtagccctcg tggatggtgg 2040 gcacgcggtc gatgccctgt tcctcaaggc tgcggtggtc gatgcgcacg ccctcgggca 2100 gcagcccgtt gcacacgtcg gcccagctct cgcgcatgct cagcagcatg gccttggtgc 2160 ccaaagggtt ctcgctgacg gtgacgcgct tccactgctt gcggttgcgc ttgtccacct 2220 tctgcacgcc ggtcttcggg tcgatgaccg ggatgcgctg gccgttcccg tccagcgcga 2280 acgtggtctt ctgcttgagc cgcgcccatt ccccggtccg agggtcgatc ctgcggttgg 2340 cgacgaggat gtgcgcgtgc gggttcctcc cctcgcggtc caaatggatc gcgtaggtcg 2400 ccgcgtaccc gccggcggtc aggttctcac ggatgaaccg ttccaccgcc aggacgcgct 2460 gcccctcgtc cagctcgcgc ggcagggcca ccatgatctt cttcgcggcc acgcccgtgc 2520 cgcgctccgc cgcctgggcg gcgttgaaca ggcgctccgg atccgcgtag ccgctgggcg 2580 cgccctcggg caggagcgtc gccacatggg ccacgcgctc cctgcgcccg aacccggaat 2640 aggtctcgcc cctcgcgtcg tcccgcacgc gcatcgacgt gatgtacgac aacgcggcca 2700 cggcgctgga cgcgctggag atgttcaacg agtagatcgc cacggcgacc tccttccacg 2760 cgtgcgggca cggggattct caaggggccg gcccgaggcc ccttgagccc gccgggaggc 2820 gcccccggca gggcgggaat ccaaagggcg gagccctgtg gccctccccg ggcaggggcg 2880 ggatcgtcaa gggcggagcc cttggccccc tcgggagagc gcactgacac aatgctacct 2940 ccggtagcat taagtgcgcc ctccgccatg cggagggacg ggccgcgacc ggatatgcgg 3000 ggaacgtcca cgacgcgtct tccgtgtcct ccgtcctgcc ttgtgccgtc gattataatc 3060 ctcggataac ggacgatgat tgaaccgatt ggaggaaacg agatgccgaa gagcttcgcg 3120 cagcagatcg aggacgacga gaacaagatc aagcgcatcc gggagcacca gcgcatggtc 3180 agggccaaac aagccaaaca ggagcgcaac gcccgcacca aaaggctcgt ggagaccgga 3240 gcgatagtgg aaaaagcgca cggcggcgcg tacgacgacg aaggacggca gacgttctcg 3300 gatggtctga acggcatcat ctcggtctac gacccgtccc gcggcggcaa cgtggacatg 3360 agagtcatcg acgtaatcga ccggcgcatc cccagattgc caaggtccga aaccacaaca 3420 ggcacggcag cggcggcatc gcgaaccgtg caagccaccg caccacagcc agcccacgcc 3480 caaccgcaaa gcttcacgcc caacccccag cgcatcgaac accggacagg agcacagcag 3540 ccggatcggt gggcctagcc gggacggcgc agccctcgct ccgctgggct gaaatatctg 3600 acttggttcg taacatattt ccgacatgtc ggaaatatgt cgtatcatcg ttgctatgag 3660 t 3661 //