ID AF359574; SV 1; circular; genomic DNA; STD; PRO; 4488 BP. XX AC AF359574; XX DT 04-APR-2002 (Rel. 71, Created) DT 16-FEB-2007 (Rel. 90, Last updated, Version 2) XX DE Bifidobacterium pseudocatenulatum plasmid p4M, complete sequence. XX KW . XX OS Bifidobacterium pseudocatenulatum OC Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; OC Bifidobacteriaceae; Bifidobacterium. OG Plasmid p4M XX RN [1] RP 1-4488 RX DOI; 10.1093/molbev/msj122. RX PUBMED; 16531508. RA Gibbs M.J., Smeianov V.V., Steele J.L., Upcroft P., Efimov B.A.; RT "Two families of rep-like genes that probably originated by interspecies RT recombination are represented in viral, plasmid, bacterial, and parasitic RT protozoan genomes"; RL Mol. Biol. Evol. 23(6):1097-1100(2006). XX RN [2] RP 1-4488 RA Smeianov V.V., Efimov B.A., Korschunov V.M., Steele J.L.; RT ; RL Submitted (12-MAR-2001) to the INSDC. RL Food Science, UW-Madison, 1605 Linden Dr., Madison, WI 53706, USA XX FH Key Location/Qualifiers FH FT source 1..4488 FT /organism="Bifidobacterium pseudocatenulatum" FT /plasmid="p4M" FT /host="Homo sapiens" FT /strain="VMKB4M" FT /mol_type="genomic DNA" FT /note="human intestinal isolate" FT /db_xref="taxon:28026" FT gene 1897..2673 FT /gene="tra" FT CDS 1897..2673 FT /codon_start=1 FT /transl_table=11 FT /gene="tra" FT /product="putative plasmid transfer protein" FT /note="similar to transfer and FtsK proteins" FT /db_xref="GOA:Q8RPR9" FT /db_xref="InterPro:IPR002543" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q8RPR9" FT /protein_id="AAM00236.1" FT /translation="MFGKRNPADTLDGVTVGFDASRRPVRLAVRGSHALIIGLTGSGKG FT SAIASIIAALCRCREPWELNFIDLKRGTEAAFYEGLITRKAYTLQDAAELVDSLLSMVN FT QRADDLHGQTRNLVPSAEYPQQVLVIDEAAELASGIDKKTRETSQHLLQSLDELLRIGR FT SWGFSCIAATQDPRVEAFKLRPRFPQRLCLRVNDEDEGRMCLGKHAVEMGARPWLLPSN FT LPGSCWAASTEGGLPQRFRFRFYTDDEIRGFQHAPR" FT rep_origin 2729..2763 FT /note="double-strand origin" FT gene 2787..3812 FT /gene="repA" FT CDS 2787..3812 FT /codon_start=1 FT /transl_table=11 FT /gene="repA" FT /product="putative replication protein RepA" FT /note="similar to replication-associated proteins of FT eukaryotic circo- and nonoviruses such as beak and feather FT disease virus putative replication-associated protein FT (GenBank Accession Number AAC69861), porcine circovirus FT putative Rep protein (Genbank Accession Number AAC35320), FT Banana bunchy top virus replicase protein (GenBank FT Accession Number AAC98788) and Giardia intestinalis FT putative replication-associated protein REP2 (GenBank FT Accession Number AAF28772)" FT /db_xref="GOA:Q8RPR8" FT /db_xref="InterPro:IPR003365" FT /db_xref="UniProtKB/TrEMBL:Q8RPR8" FT /protein_id="AAM00235.1" FT /translation="MEDKRETGYTDWLLTIRRELPDGSERTVDDVVNALQGIFDAAIGQ FT PEKGEGGYRHYQIFAQGKRQRFSTLKKKLTAAGLGDAHVEPRKGSVSEAVGYCSKEKTR FT DGDGFQFGQIDRHEKEDSHQGERSDLARLKARAEAGETVSQILLSEDGELAARYLGWLR FT ATCDAAQAAKYRTKVRDDLEVNFLYGETGVGKTSHVYESEGIGTVYTVTDYAHAFDKYE FT GEGILLLDEFTGQFPMPLMLKLLDKWPMQLPARYSNRWAAFSRIWVVSNLPPNNLYSYA FT PESQRRAFFRRFAHFYKMDEAHQLIEEPNPLQPVVSEFDRLNALPAQPIEPYLADLGLT FT L" XX SQ Sequence 4488 BP; 938 A; 1154 C; 1229 G; 1167 T; 0 other; ggctgctgcg ggagtactgg attttaggcc gaagccgtcg aatgggtttg tttctccggt 60 ggggtgggct gccttatatg ctgccctata tgccttgtct tcggcgtcca tcatggcttt 120 ccatgcttcc ttaatctcag attgtacggc tctctttcgg attcaccttg tcaagagcgg 180 ccagcctgta gaactcgctt ccttcgtctg tgaaggaata cggttcgccg tattcgtcgg 240 tccgatatgc gccggttgca tatcgctgcg ccgcgtcctt gattgcaagc acggtattcg 300 tcggcaggac gtgcgccagc agggcctttt tcacgacggc cttccactct ccgtttgggg 360 ctgtcagctg ggattcgagg gcatttctga agctcttttc gaaagcctgc tggtaatcgt 420 caagtggctc ataagatgcg tccagcgggt cggcagtcgc ttggatttcg ccattgatga 480 accgaatggt acttcttttt tcttgttcgt ctgagaattc gtcaaagtcg gtcgtatcca 540 cgtcgcgctg tgctctcgct ttcttaatca gcggggcgta cttgttgtag aaggtctgac 600 gactgccgcc tagtgcctcg ctcattgctg tagctgattc gcctcctagt gctgcgtcca 660 tgacggcctg ctcacgtacc ttttccatgc cttcctcgac tagggtgagg tatcgtagtg 720 cgtcggtgaa atggccgtat tccaacgatt ccagcgtttc caatatgctg tttaatgtgt 780 catcggcggt gccgcgcaca gcctcggttg tttctagatg cttcattgct ccactccaat 840 ctgtaaacat tttttacact taagtctatt atatcacatg ctttattcta agtgtaatcg 900 ggtgtccaat atatttacat atctaattac tttacgtcca ttttatttac atgtcaattt 960 gatagacatg tccattttct ttacacgcta tacatcttat atacatacta gtccactttc 1020 aggaaattct cagttttagt ctctaccttg aaaatcgtcc ataattcacc gaaaatgaaa 1080 ggatggtgat agcaatggca gcacgaaacc gccgataccc tatcgacaat tcgtcggcca 1140 ctgaacggtt cttaggctgc tcgcctcgca tgcgtgatgg gcaccagatg accgcgcgag 1200 gcgggctatt ccagtggact atttcccttc tggaagacgt cgattacggg gactaccaga 1260 ctacggatga caaacagcaa gtaattcttg catcgccgcg tcccgtgtca ttccctaagt 1320 acgctgcggt caagctcgtg aatccgatgc tttcgaccta tagcttccgc aacgaacgcg 1380 gcgaaaccat cagcggcatc aacatctacg tcgatgacgt ggtggccgca gattccgagg 1440 ctggtgaggc tgagtgaacg agttcctgga tgtgtggaat caagtgccgc atgactggca 1500 gctggggctt attctgcttg ctgtcgcgct ggtgctctgg gggcttggtg ccgctatcaa 1560 gcaatgccta acgttccgct tccgcgacgc gctggctcgc cagttcgtca aggatttcaa 1620 ggcgcgtgac gtttccgatg ggattgatga caaaggccat cgccgctccc atcggcccag 1680 tccagccgag gctttggctc agctgaaaaa atgcctgcat gtctggcgcg ttcgtggagg 1740 ctacttcact gtcatctcgt atcaggctaa tcagggtctg ccggattcgg agcttcttaa 1800 gagagcttcg gaggctacca aggatgctga ttacgagcat acggtcagca ctcttggcgg 1860 ctggaagttc ctgcatagca ggattggcgg caagtgatgt tcggcaagcg caacccagcg 1920 gatacgttgg acggggtgac ggttggtttt gatgccagtc gccgccctgt gcggcttgcc 1980 gtgcgtggtt ctcacgcctt gattatcggt cttaccggct caggcaaggg cagtgccatc 2040 gcttccatca ttgccgctct gtgtcgctgt agagagccgt gggagcttaa cttcattgac 2100 ctgaaacgcg gcacggaagc cgctttctat gagggtctga ttacccgcaa ggcctacact 2160 ttgcaggatg ctgccgagct ggtcgattca ctgctctcta tggtgaatca gcgtgccgat 2220 gacctccacg gccagacacg aaacctcgta cctagtgccg agtatccgca gcaggtacta 2280 gtgattgacg aagccgccga actcgcgtcg ggcatagata aaaagacgcg cgaaacctct 2340 caacatttgt tgcagtcgct agatgaactg ctccgcatag gtcgcagctg gggcttctcg 2400 tgtatcgctg cgacgcaaga ccctcgtgta gaggctttta agctcaggcc gcgcttccct 2460 cagcgtcttt gtctccgcgt caacgatgag gacgaagggc gtatgtgtct tggaaaacat 2520 gccgtggaaa tgggggcgcg tccgtggctc ctgccttcta atctgcccgg ctcttgctgg 2580 gctgcgagta cggaaggtgg tctgccgcag cgtttcagat ttcgcttcta tacggatgac 2640 gaaatacgtg ggtttcaaca tgcgccgcgc tagcggtgcg ggcggcgggg gcgcagcgcg 2700 taaaagcgaa gccccagccg cccctatccg tgggcggcat agtgttaccc gcccacttgc 2760 ttgtaccagt accagaagga tggattatgg aagacaaacg ggaaactggg tatacggatt 2820 ggcttctcac gattcgtcgg gagcttccgg acggttccga gcgcaccgtt gatgatgtgg 2880 tgaatgctct gcaaggtata ttcgatgctg ccataggcca accagaaaaa ggtgaaggcg 2940 gctatcggca ttatcagatt ttcgcgcaag ggaagcgtca acgcttcagt actctcaaga 3000 aaaagctcac ggctgctggg cttggtgatg cccacgtgga gcctcgcaaa ggctctgtga 3060 gtgaggctgt ggggtattgc tcgaaagaga aaactaggga tggtgacggc ttccaatttg 3120 gccaaattga taggcatgag aaggaagata gccatcaggg ggaacgctcc gacttggctc 3180 gcttgaaggc tcgtgctgag gccggtgaaa cggtcagcca gatactgcta tctgaagacg 3240 gtgagctggc ggcaagatat cttggatggc tccgcgccac ctgtgatgca gctcaggcgg 3300 cgaaatatcg gacgaaggtg cgcgacgatt tagaagtcaa ttttctgtat ggtgaaaccg 3360 gcgtggggaa gacttcacat gtgtatgaat ccgaaggcat tggcaccgtc tacacggtga 3420 ccgattacgc ccatgctttc gacaagtatg aaggtgaggg catcttgctg cttgatgagt 3480 tcacggggca attccctatg cctttaatgc tgaagctact agacaagtgg ccgatgcagc 3540 ttcctgctcg atacagcaat cggtgggctg ccttttctcg gatttgggtc gtgtcaaatc 3600 tgcctccgaa caatttgtat agttacgcac cagaaagcca gagaagggcg tttttccgcc 3660 gttttgccca cttctacaaa atggatgaag cccaccagtt aatcgaggaa ccgaacccgt 3720 tgcaacccgt cgtgtcggaa ttcgataggt tgaacgcact ccctgcgcag ccaatcgagc 3780 cgtatctagc tgacctcgga ctgaccttgt aagcgttgtg ccggagctat ctgcaacttt 3840 tataaattcg tccgtttcgg atggtgaacg ctcaggagag tgtgccttgt gtaagtaagg 3900 cacactcaaa tcgtttcggc atggagccac gactatcgaa cgcgcagaat aagtaattaa 3960 ctgattccaa ccaccggcat acccctacag cacatttttg aatttctgga aaaataaagg 4020 ccgcgtcggg caggtcgttt atgccgcagc cactgcaagg tctgttgatg tctgacgctc 4080 taaccgttac catcgctggt cgttatccct caggcgagcc gtcagtttta tacagccctt 4140 agacggggat tgagctgtgt caccacacgc cgtgttacca gcacggtgat agtatggcta 4200 tgtatctttc ttttctgagg tcgatgttac cagcgtcggc ctcttttttt gttcgtttcg 4260 gaaaaaaaga taacaccccc agaaaattgg gggtgtcgtt gaatcaaaca gaatctatca 4320 ggcttcttgt tcgttttgtt cggcttcagc tttcttcaac gcgcgactaa aagtcgctcg 4380 cgacacgccg tagagcttgg cgaagctctc gcgagtggga ttcttcccct cgtccttggc 4440 tttgttctgg tacttctgcc actcttcgag gagattatcg ggaagctt 4488 //