ID AF118150; SV 1; circular; genomic DNA; STD; VRL; 4981 BP. XX AC AF118150; XX DT 18-MAY-1999 (Rel. 59, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Budgerigar fledgling polyomavirus, complete genome. XX KW . XX OS Budgerigar fledgling disease polyomavirus OC Viruses; dsDNA viruses, no RNA stage; Polyomaviridae; Polyomavirus. XX RN [1] RP 1-4981 RA Lafferty S.L., Fudge A.M., Schmidt R.E., Wilson V.G., Phalen D.N.; RT "Avian polyomavirus infection and disease in a green aracaris (Pteroglossus RT viridis)"; RL Unpublished. XX RN [2] RP 1-4981 RA Lafferty S.L., Fudge A.M., Schmidt R.E., Wilson V.G., Phalen D.N.; RT ; RL Submitted (06-JAN-1999) to the INSDC. RL Large Animal Medicine and Surgery, Texas A&M University, College Station, RL TX 77843, USA XX FH Key Location/Qualifiers FH FT source 1..4981 FT /organism="Budgerigar fledgling disease polyomavirus" FT /host="Pteroglossus viridis" FT /mol_type="genomic DNA" FT /db_xref="taxon:10625" FT CDS 779..964 FT /codon_start=1 FT /product="agno-like protein" FT /db_xref="UniProtKB/TrEMBL:Q77RB7" FT /protein_id="AAD30957.1" FT /translation="MRQALARQALLSLLHSLTRLPLLLPPLRLLLLLLLPSPPRQPALA FT SRLTQPNRPNRGRLAK" FT CDS 977..2002 FT /codon_start=1 FT /product="coat protein VP2" FT /db_xref="GOA:P13892" FT /db_xref="InterPro:IPR001070" FT /db_xref="UniProtKB/Swiss-Prot:P13892" FT /protein_id="AAD30958.1" FT /translation="MGAIISAIAGLFELGALGGLAVDAAVNTAEIEAFIGELVLQDFSV FT AEIFDAIETSGIPLANTAVPVAELQQTAATSGLIGQALSAPSLIAASVKAFAGDPVAAG FT NNMALQVWRDQMDILFPGAEWFSNAVHNINPLAWAQSLYEQVGQSIWNYMTGNIGQAVI FT HQIEERTTALIVYQSRGIYDILARALETARWTLTTAAVDTYHTLKSYYGELPAVSGRGE FT AFRRYHEVAQGRSFFEDSDIQDVLEGKKAQKRIEGPQEMTGQTIEQQTPPGGAMQRHAN FT DWLLPLILGLYGDLTPEWRYQLKERLNVPKRKRKLPTTSAGTSPPSKRRYRGVRRKVRS FT R" FT CDS 1295..2002 FT /codon_start=1 FT /product="coat protein VP3" FT /db_xref="GOA:P13892" FT /db_xref="InterPro:IPR001070" FT /db_xref="UniProtKB/Swiss-Prot:P13892" FT /protein_id="AAD30959.1" FT /translation="MALQVWRDQMDILFPGAEWFSNAVHNINPLAWAQSLYEQVGQSIW FT NYMTGNIGQAVIHQIEERTTALIVYQSRGIYDILARALETARWTLTTAAVDTYHTLKSY FT YGELPAVSGRGEAFRRYHEVAQGRSFFEDSDIQDVLEGKKAQKRIEGPQEMTGQTIEQQ FT TPPGGAMQRHANDWLLPLILGLYGDLTPEWRYQLKERLNVPKRKRKLPTTSAGTSPPSK FT RRYRGVRRKVRSR" FT CDS 1899..2930 FT /codon_start=1 FT /product="coat protein VP1" FT /db_xref="GOA:P13891" FT /db_xref="InterPro:IPR000662" FT /db_xref="InterPro:IPR011222" FT /db_xref="PDB:3IYS" FT /db_xref="UniProtKB/Swiss-Prot:P13891" FT /protein_id="AAD30960.1" FT /translation="MSQKGKGSCPRPQQVPRLLVKGGIEVLDVKSGPDSITTIEAYLQP FT RPGQKNGYSTVITVQAEGYQDAPHSTEVPCYSCARIPLPTINDDITCPTLLMWEAVSVK FT TEVVGVSSILNMHSGAFRAFNGYGGGFTICGPRIHFFSVGGEPLDLQACMQNSKTVYPA FT PLIGPGEGEPRETAQVLDTGYKARLDKDGLYPIECWCPDPAKNENTRYYGNLTGGPETP FT PVLAFTNTTTTILLDENGVGPLCKGDGLFLSAADVAGTYVDQRGRQYWRGLPRYFSIQL FT RKRNVRNPYPVSGLLNSLFNDLMPRMTGQSMQGSDAQVEEVRVYEGMEGLAPEIDMPPK FT APR" FT CDS complement(join(2987..4405,4637..4981)) FT /codon_start=1 FT /product="large T antigen" FT /db_xref="GOA:Q9WG03" FT /db_xref="HSSP:1N25" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003095" FT /db_xref="InterPro:IPR003133" FT /db_xref="InterPro:IPR010932" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR017910" FT /db_xref="UniProtKB/TrEMBL:Q9WG03" FT /protein_id="AAD30961.1" FT /translation="MASLRRLTELLGLPVTATAADIKTAYRRTALKYHPDKGGDEEKMK FT ELNTLMEEFRETEGLRADETLEDSDPEPEESGYATFENVSVPDIDGAFFKLMKLKKCMQ FT TYFSVNERRKQQSCPDCHLLITSITKMPQLKAHLYEHFGIKGHMLAHWTGIALLVLQLE FT KPTRISTVHNFCKKYCTISICSVRGIKKNCVHALITTLLDVPGLDPEECSIDMNVVDEK FT QFMHAMLYDYAVQIDCTDALLLLAIYKRLAQPTDKCPECQKDKDTVKRKRSTHIDDHPR FT HQHNASLFLHIKDQKRLCQCAVDAELAEKRFRSATMTRDERLKERFRTVLRNIQELLDG FT ETEAIDDFVTAILLFNMLFPDVDVIVDILQTMVKNPPKRRYYIFKGPVNTGKTTVAAAI FT LALCTGASLNVNGTPDRLQFELGCAIDQFMVLFEDVKGTPEPDTNLPSGFGMVNLDNLR FT DHLEGSVPVNLERKHQNKVSQIFPPGIITMNNYVLPHTIQARARTLVNFKHIKVYAKAL FT RNNISVLEQRLITKPETLLAYLLIRPESEKEISADLRAEFLTVIENLKFEVDERFFQYN FT NRLHEGLCVHE" FT CDS complement(4544..4981) FT /codon_start=1 FT /product="small t antigen" FT /db_xref="GOA:Q9WG04" FT /db_xref="HSSP:1XBL" FT /db_xref="InterPro:IPR001623" FT /db_xref="InterPro:IPR003095" FT /db_xref="UniProtKB/TrEMBL:Q9WG04" FT /protein_id="AAD30962.1" FT /translation="MASLRRLTELLGLPVTATAADIKTAYRRTALKYHPDKGGDEEKMK FT ELNTLMEEFRETEGLRADETLEDSDPEPEESGYATFENVSVPDIDGAFFKLMKLKKCMQ FT TYFSVNERRKQDIRPEYFELFKAFQDVPWKVLEDFFTSEMF" XX SQ Sequence 4981 BP; 1289 A; 1223 C; 1201 G; 1268 T; 0 other; ggtatagctt ttttctctgt atagtgcact ggcttgccag agcgcgattt ataaaaacaa 60 gggaagtgct gagcaatcgt tacataacat gcattccaaa taagggaatg cggaaatcca 120 tacttgggac ttacataaca tgcattccat ataaggaata cggatatgcc catgtttgta 180 tccaaacagg cggtctccca gactccgcct atcgtcccat attacgtgcc gctccataaa 240 agggaggcgt acgtgacctt tttacaggat attacgccct agcaacagga tgtctactcc 300 agcgcgagat ccaaacacgg cgggcactgc ggtaagttcc cccatttaaa ttcaaatgtt 360 tgcgcgcgaa agctaacaat gcctaacgga acgcctaccc taaacaggcc cttagcccgt 420 ttagcactcc gaatcacgag ctgcgcgcac cagggcctgg agaggctcat tcgcctttta 480 cacctactgc tgcacctggg tcgcagcctg ctggatctct ttcagaccct gaggacggcc 540 ctgacccaac cttcaacttc tatattcagg tatgtatgac ccatagaacc cccctgtcca 600 tacgtgtatg ggtatgctta tgtaccttta cagggacatc ggcgccgtcc ctatgaccgt 660 cagaaccgct tcgggaaact agaaagcgag attcgggaaa ccaaatccca attggagacc 720 ctgcgccagg aattaaagca tctgcaggca gacgtagatg atctgaagga gacagtgtat 780 gcggcaggca ctagcacggc aagcacttct gtccctcctt cacagcctaa ctcgcctacc 840 cctactgcta ccacccctga ggcttctcct gctgctccta ctaccgagtc caccgagaca 900 accggcccta gcgtcgcgac taacgcaacc gaaccgtccg aatcgcggcc ggctcgctaa 960 gtagctgcac taaggtatgg gagctatcat ttcggctata gctggtctgt tcgaactagg 1020 agcattgggt ggcctagcag tagatgctgc cgtaaataca gcagaaatag aagcattcat 1080 aggggaattg gtactgcagg actttagcgt tgctgaaata ttcgacgcta tagaaacaag 1140 tggtatacct ttagcgaata ccgctgtacc tgttgcagag ctacagcaaa cagcagcaac 1200 ttccgggttg attggacagg cgctaagtgc cccatccctg atagcggcgt cagtcaaggc 1260 ctttgcagga gaccccgtcg cagccggcaa caatatggcc ctacaggtct ggagagacca 1320 aatggacata ctctttccag gagcggaatg gttctcgaat gctgtacata atatcaatcc 1380 attagcatgg gcccaatcgt tgtatgaaca agtaggccaa agtatatgga actatatgac 1440 aggtaacatt gggcaagctg taatacatca aatcgaggag cgtacaacag ccctgattgt 1500 gtaccaaagt aggggtatat atgatatact tgctagagcg ttagaaaccg cacgttggac 1560 attaacaaca gcggccgtag atacatatca tacactaaaa agctactatg gtgagctacc 1620 ggctgtgtcg ggcagaggtg aggcctttcg taggtatcac gaggtcgcac aaggacgtag 1680 cttctttgag gactcagata tacaagatgt attagagggt aaaaaggccc aaaaacgaat 1740 tgagggccca caggagatga caggccaaac catagaacag caaacccccc caggaggtgc 1800 aatgcaacga catgcaaatg actggttact ccctttgatt ctaggtctct acggggacct 1860 gactccagag tggcggtacc agcttaagga aaggctcaat gtcccaaaaa ggaaaaggaa 1920 gctgcccacg acctcagcag gtacctcgcc tcctagtaaa aggaggtata gaggtgttag 1980 acgtaaagtc aggtccagat agtataacaa ccatagaggc ataccttcaa ccgcggcctg 2040 gacaaaaaaa tggatactcc acagtaataa cagtgcaggc agaaggatac caggatgccc 2100 cccacagcac agaggtaccg tgttacagct gtgccaggat accgctcccc acgatcaacg 2160 acgacattac gtgcccgacc ctgcttatgt gggaggctgt cagtgttaaa actgaggttg 2220 ttggagtgtc tagtattctc aacatgcatt ctggggcttt ccgcgcattt aacggatacg 2280 ggggaggctt tactatttgt ggccctagga tccatttctt tagcgtgggt ggagagcctc 2340 tcgatttaca ggcatgtatg caaaattcaa aaactgtgta ccctgcaccc ctaattgggc 2400 ctggggaagg agaaccacgt gaaacagcac aggttctcga tacgggctac aaggcccgac 2460 tagataagga tggcctctac cccattgagt gctggtgccc agaccctgct aagaatgaga 2520 acactagata ttatggcaac ctcacaggtg ggcctgaaac cccccctgta cttgccttca 2580 caaacactac aacgacaatt ctccttgatg aaaatggggt tgggccccta tgcaagggcg 2640 atggcttgtt cctctcagct gcggatgtgg caggtaccta cgttgaccaa cgtggccgcc 2700 aatattggcg aggcctacca cgctatttca gtatccagct gagaaaacgt aatgttcgta 2760 acccctatcc tgtatctggt ttgctaaact ccttgttcaa tgacctgatg ccccgtatga 2820 ctggtcaaag catgcagggc tctgatgcac aggtggagga ggttcgtgtg tatgagggta 2880 tggaagggct ggctcccgag attgacatgc cccccaaagc tccccgctaa atagactaga 2940 cgcaagatgt tttatatgcc actctgttta ttgcatgtaa ataaagctat tcatgaacgc 3000 ataagccttc gtgcagtcta ttattatatt ggaagaaacg ttcgtccact tcgaacttaa 3060 ggttttcaat taccgttaga aattcggccc tgagatcggc gctgatctcc ttttcacttt 3120 cgggcctaat caataggtat gccaagaggg tttccggctt cgttattagg cgctgctcca 3180 gcacactaat gttattacgg agcgccttgg catacacttt aatgtgctta aagttaacca 3240 aggtacgggc gcgtgcctgt atggtatgtg gcaatacata attattcatg gtaatgattc 3300 ctggaggaaa tatttgtgac accttatttt ggtgtttccg ttcgaggttt acgggtacac 3360 taccttcgag atgatctcgc agattatcga ggtttaccat accaaagcct gaaggcaggt 3420 ttgtgtctgg ttcaggtgta cctttaacgt cctcgaacag aaccatgaac tgatcgatag 3480 cgcatcctag ttcgaattgc agtcgatcag gggtgccatt tacattcagg gatgcccctg 3540 tacacagtgc cagtatggca gcagccacgg tggtcttacc cgtattcact ggacctttaa 3600 atatatagta tcgccgcttc ggtgggtttt tcaccattgt ctgcaatata tcaacaatca 3660 catcaacatc tggaaataac atattgaaca acagtatagc tgttacaaaa tcatcaattg 3720 cctcagtttc accatctaag agttcctgaa tgttacgtag cacagtccgg aagcgttctt 3780 tgagacgctc atcccttgtc atggtcgctg accggaaacg tttttctgca agctcagcat 3840 ccacagcaca ttggcatagg cgtttttgat ccttgatgtg cagaaatagt gaggcgttgt 3900 gctggtgtcg tgggtggtcg tcgatatgtg tcgacctctt gcgcttcacc gtgtccttgt 3960 ccttctggca ctcgggacac ttatcggtgg gctgtgctaa tcgtttatat attgcaagta 4020 acaatagggc atcggtacag tcaatttgta ctgcatagtc atataacatt gcatgcataa 4080 attgcttttc gtccacaaca ttcatatcaa tactgcattc ctccgggtcc aggcctggca 4140 catctagcag ggttgtaata agagcatgaa cacaattctt tttaatacca cgtacagaac 4200 atatcgaaat ggtacagtat tttttgcaaa agttatgcac cgtcgatata cgcgtcggtt 4260 tttctagctg aagcacgagc aacgcgatcc cagtccaatg cgcaagcata tgtcccttta 4320 tcccgaagtg ctcataaagg tgggccttaa gttgcggcat tttggtaatt gaggtaataa 4380 gcaagtggca atcagggcag ctctgcacgg agcgtggggt tagtaaataa gcttctacct 4440 ctgggggtag ctcatagtcg gtggtacccc tttttggggg tgtgctatac tgactatcct 4500 gagagttgtc atcctgggtt gtttgaggtt cggtgccctg taattagaac atttcacttg 4560 taaaaaagtc ctccagtacc ttccatggta catcttggaa ggccttaaac agctcgaaat 4620 attcaggcct tatatcctgt ttgcgtctct cgttaacgct aaaataggtt tgcatgcact 4680 ttttcagttt catgagttta aagaaggccc catcgatatc gggtacactt acattctcga 4740 aggtagcata gccgctctct tcaggttcgg gatcggagtc ctctagggtc tcatctgcac 4800 gtaggccttc ggtctcacgg aattcctcca tgagggtatt caattccttc atcttttcct 4860 catcccctcc tttgtcggga tggtacttca gtgccgtgcg acgataggca gtcttgatat 4920 ctgcagccgt tgcggttaca ggtaggccca ggagctcggt caatctgcgc agagaagcca 4980 t 4981 //