ID AF085719; SV 1; circular; genomic DNA; STD; PRO; 5750 BP. XX AC AF085719; XX DT 03-JUN-1999 (Rel. 59, Created) DT 03-MAR-2000 (Rel. 62, Last updated, Version 2) XX DE Bifidobacterium breve plasmid pCIBb1, complete sequence. XX KW . XX OS Bifidobacterium breve OC Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; OC Bifidobacteriaceae; Bifidobacterium. OG Plasmid pCIBb1 XX RN [1] RP 1-5750 RX DOI; 10.1111/j.1574-6968.1999.tb13581.x. RX PUBMED; 10339821. RA O'Riordan K., Fitzgerald G.F.; RT "Molecular characterisation of a 5.75-kb cryptic plasmid from RT Bifidobacterium breve NCFB 2258 and determination of mode of replication"; RL FEMS Microbiol. Lett. 174(2):285-294(1999). XX RN [2] RP 1-5750 RA O'Riordan K., Fitzgerald G.F.; RT ; RL Submitted (22-AUG-1998) to the INSDC. RL Microbiology, Univeristy College Cork, Western Road, Cork, Ireland XX DR StrainInfo; 30463; 0. XX FH Key Location/Qualifiers FH FT source 1..5750 FT /organism="Bifidobacterium breve" FT /plasmid="pCIBb1" FT /strain="NCFB 2258" FT /mol_type="genomic DNA" FT /db_xref="taxon:1685" FT CDS 1463..2062 FT /codon_start=1 FT /transl_table=11 FT /gene="par" FT /product="partitioning protein" FT /note="Par protein; putative involvement in plasmid FT partition" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:Q9X3U6" FT /protein_id="AAD34708.1" FT /translation="MILSIIASKGGTGKTTSSIFLACAAHTADPSLSITLLDADPQQSA FT TDWAEEAEQNKDPLPFMVKYAGESDIENLKDNEGLTIIDTAPGFTDLTQTIIAKSDLCI FT ITTSPTQIDARRAWKTFEAIQRAGGTSAILITRANTRTKDFRDMIDDLHNDDANNGILF FT DTVIRQSTRYSKPFGHTPKKTYDYADAWQEIQKAGE" FT CDS complement(2373..3515) FT /codon_start=1 FT /transl_table=11 FT /gene="rep" FT /product="replication protein" FT /note="Rep; similar to replication proteins of Streptomyces FT plasmids and other members of the pC194 family that FT replicate by a rolling circle mechanism" FT /db_xref="GOA:Q9X3U7" FT /db_xref="InterPro:IPR000989" FT /db_xref="UniProtKB/TrEMBL:Q9X3U7" FT /protein_id="AAD34709.1" FT /translation="MTNGEKARFTGTMLCGSIWACPTCSAIIRHERAHEVALAIGNHAE FT KLRKAAADQWQAEHEGQRLPPELMVSDSFGNYIFGTLTLRHDRTMPLAMTLDAILKGWT FT KMINGSPWQRASERWKIRGFVRAIEITYGVNGWHPHIHFVMFLDGDLDDGQREAMQQWL FT LDRWKTMVKRVAKAYKKKDGNPYNVAPNDEHGIDLQFKSGKDAGTAAAEYITKIQGDKG FT GVTLAQEIARGDIKNGRMGSVNPFQLLDSGCLGLSDFQREDLWLEYWQATLRRRCITWS FT RGLKEDMEVEELEDEELAEKADELPGLVGYVVPNRVYKDIRKSAPETLADALDAAERED FT WQEVARLLPGGVILTDEQQDAIADGEAKPGDYLPTMSVMV" FT rep_origin complement(3926..3934) FT /note="region conforming to double stranded origin; nicking FT site of rolling circle plasmids" FT CDS complement(3985..4845) FT /codon_start=1 FT /transl_table=11 FT /gene="ftsK gene homolog" FT /product="unknown" FT /note="hypothetical protein; similar to transfer proteins FT and FtsK homologs" FT /db_xref="GOA:Q9X3U8" FT /db_xref="InterPro:IPR002543" FT /db_xref="UniProtKB/TrEMBL:Q9X3U8" FT /protein_id="AAD34710.1" FT /translation="MKWPWNHNTKPEPLPFRLRPFDPATGGITVGKLANGNDATLIVTN FT TSGVVVGGIPGSGKTAGMMVIVLALYLSGCCNIHVIDGKGGDDWGWFSEHATTFVRGDL FT DTVHDTLLRLDDEMKCRIASMRQRYGSANYWNVQPDKRPPLEVIIIDECQSFFNAKGIL FT GGKPAKDKAEEITAAATEIVQKGRSGGFLLFAITQKPTTDSLPSALRENCENRICFRVK FT TPEAARAVLGDMPDGSPSPTDIPPARRGGAIIGLATGEDVMCRFAYVSEEEAERAVVAN FT HKGVI" XX SQ Sequence 5750 BP; 1278 A; 1656 C; 1616 G; 1200 T; 0 other; ccaatgtgaa cgtgtcttct ttttccattc attcctccat tcgagcgagc attgcgggca 60 cttccgcttc cacaagacgg ttgatgatgc tggagcgcga agtgttggtg tacccctcac 120 gcttggccct atagacggca tcgtccagag cggcgacggt ggtgcagggc aatgtgatgc 180 agatacggcg aagcattttc actcctcctc caacgacggc atgatgggcg ctgtatccag 240 ctgcatgacc cgtacggaat cggcggtcag agaccatgcg acgcggccgt tcctgaccca 300 cggaacgacg tgaacggagc cggtcagctg gatacgggag agcggcggaa caggcgagat 360 aggcgcagtg aacacggcaa ggctgacgtt gctatccaca ccgttttcgt cgatgtactg 420 gcagggaatc tggaaaaccg ggcgaccgtc aacgagtttt ggcgtggttg tcacgtgccc 480 ctgatcgtcg tacgtcatct tctgccggat agtggcgggg tcgattcccc gcgtcgtctg 540 aaacgcgccg ggaatgtcgg cggcgttcat ggcgaggttc ggactgaatg gcatgaaagc 600 tcccttcgtg agttgtagct ggggcacggg attgcgcccc agcggacttt caccaaacag 660 catacaggca tacctgtata ttgtcaacag tttaaactgt aggtacaccc tagactgtat 720 gatttaaaca tgaatcagcc aaaattcgac atcattcccg acgaaacgaa ccgggaacac 780 aacaccagaa ccaaagcggc actggagctg ctggaaagca acaaagaatt acgcgactgg 840 gcaaaaaccc acttcctcgc agaattacgc aacatgatta ccaatcagat agtcgaggaa 900 ggtcatgaac tctcagacga actcatgaag tacggcgtac gactgtgccc caaagtcgcc 960 atggtttgga tcgccaatga attggagaac aacgtgggcg cgattacaga atggcttgcc 1020 ggttttgcct actgggaggg cgacagcaag gcaaatcttg caagggctgt aggaatacgc 1080 caacaaagct acgccaccca tttccggcag ctagaagaaa tcgcagcagc ccaaaacaag 1140 gccgacgaaa ccggacaaga ccaaacaatc agcctccgag gggcaccatt cataattcac 1200 cccggaccca gcgaagaaga agaccaggaa taagtgttct tgttttcttt catgcgggat 1260 tgtgcgttcc ggccaccgga gagtcaaatc ttcaaaccgc gaggcggttt ggtgtgtcta 1320 tatagacaca catcagattt gactatccgg cgtcctccac tgggatttcg catttagaaa 1380 gaaaaccaga accggaaaac attcgtcagc gaaccaccaa aactattaca ctatcagaat 1440 attagtgcga tagaataacg gcatgatact tagcattatc gcgtcaaaag gcggaaccgg 1500 gaaaacgacc agcagcatat tcctagcctg cgccgctcat accgcagacc cgtcactgtc 1560 aatcaccctc ttggacgccg acccacagca aagcgccacg gactgggcgg aagaagccga 1620 gcaaaacaaa gacccgctcc ctttcatggt caaatacgcc ggagaatcgg acatcgaaaa 1680 cctaaaggac aacgagggcc tgaccatcat cgacacggca ccgggattca ccgacctcac 1740 ccagacaatc atcgccaaat cagatctgtg catcatcacc acctcaccaa cccagattga 1800 cgcccggagg gcttggaaga cgttcgaagc aatccaaaga gcaggcggaa cctcggcaat 1860 cctcatcaca cgagccaata cgcgcacgaa ggatttcagg gatatgatcg acgacctgca 1920 caacgacgac gcgaacaatg gaatcctctt cgataccgtc atcagacaat cgaccagata 1980 ctcgaagccg ttcggacaca cgccaaagaa aacctacgac tatgcagacg catggcaaga 2040 gatacagaaa gcaggggaat gatggcactc ggaaaattca gcaggaaagc agccgaacag 2100 gcacccggcg acatctcaat gacaccgaaa gagccaacga agaacgcgga cgaggagggc 2160 cgaaacaatt ccaaaacgaa agtgcgcagc ttcagtgtcc gccttgacct ttgggagaag 2220 ctggacacct atcgaatcac acaccgcacc aaatctggga caatcccctc ggcttcaagc 2280 atagtaaacg aagcccttga agcctacctc aaatgactat gacactatca actatgacac 2340 tatgacacta tcaactatga cactatcaac tattacacca tgacactcat agttggcaga 2400 tagtcccccg gtttggcttc gccatcagct atggcgtcct gctgttcgtc agtgagtatg 2460 acgccaccgg gcaagagccg tgcgacttcc tgccagtctt cgcgttcggc ggcatccaat 2520 gcgtcggcca gtgtctcagg cgcactcttg cgaatgtctt tgtaaacccg attcggcacg 2580 acatagccga ccagaccggg cagttcgtcg gctttctccg ccagctcctc gtcttccagt 2640 tcctcgacct ccatgtcttc cttgaggcca cgcgaccatg ttatgcagcg gcggcgcaga 2700 gtggcctgcc agtattcgag ccagagatct tcgcgctgga aatcggacag cccgaggcac 2760 ccggagtcca gcaattggaa cgggttaacc gaccccatac gaccattctt gatatcgccg 2820 cgcgcgattt cctgagccag agtgacgccg cctttgtcgc cttgaatctt ggtgatgtat 2880 tcggccgcag cggttccggc gtccttgccc gacttgaatt gcagatctat gccgtgttcg 2940 tcgttcgggg cgacgttgta ggggttgccg tcttttttct tgtatgcctt ggcaacgcgc 3000 ttgaccatgg ttttccagcg atcgagcagc cattgctgca ttgcctcacg ctgcccatcg 3060 tccagatcgc catcgagaaa catgacgaaa tgaatgtgag ggtgccagcc gttcacaccg 3120 taggtgattt caatcgcgcg gacgaaaccc ctgattttcc aacgttccga ggcccgttgc 3180 caagggcttc cgttaatcat cttcgtccag cccttgagga ttgcgtcaag ggtcatggcc 3240 agcggcattg tccgatcatg gcgcagggtg agggtgccga agatgtagtt tccgaagctg 3300 tcggacacca tgagttccgg cggcagacgc tgcccctcat gttctgcctg ccattggtcg 3360 gcggcggctt tcctcagttt ctcggcatgg ttcccgatgg cgagggcgac ctcgtgggcg 3420 cgttcgtggc gaatgattgc cgagcaggtg gggcatgccc agatcgagcc gcacagcatg 3480 gtgcctgtaa accgggcttt ctcgccgttg gtcatgacac ccacgccggt gtccaccggt 3540 tggccgcagc gtgcgcagcg cggcagctta atcggctcga atccgagcgt ttcgccaccg 3600 gcatgacgga cgagaatctt tcggctttca gcgcggcgac catacgccag acgccgttaa 3660 atcggtgcgg gagagggagg gggttatttt attcgtcttt tcccaaggcg ggccgctacg 3720 cgccccgctt gccgcttccg cggctacgcc ttgaggcttc gccgctactg cggcgtgcag 3780 ccgttcggcg gtctggtgct gggacggtga agggacaccc atcgggttcc acttcgtccc 3840 ctgagttggt acactcatag tgacgacttt ctaaagttgt agccagcggt gcaaagtttg 3900 gcgacctaga ccgctagcgg actttcaaga ttccccccgg ggttccagcc ccggggggtt 3960 tccttttatc agctgtgact cagtttaaat tacacccttg tgattcgcaa caacggccct 4020 ttctgcctcc tcttcgctca cgtacgcgaa tcggcacatc acgtcttcgc cggtggccag 4080 tccgatgatg gcgccaccac gacgggccgg tggtatgtcg gtcggggagg gggaaccgtc 4140 cggcatgtcg cccagtacgg ctcgtgctgc ttccggtgtc ttgacgcgga agcagatacg 4200 gttctcgcag ttctcgcgta gtgccgatgg cagcgaatcg gtggtaggtt tctgggtgat 4260 ggcgaacagg aggaagcctc ccgaccggcc tttctgcact atctccgtgg cggcggcggt 4320 gatttcctcg gccttgtctt tcgccggctt gccgcccagt atgcctttgg cgttgaagaa 4380 gctctggcat tcatcgatga tgatcacttc gagtggcggg cgtttatcgg gttggacgtt 4440 ccaatagttc gcggaaccat accgctgacg catagaggct atacgacatt tcatttcgtc 4500 atcgagcctc aggagggtgt catgcacagt atcaagatcg ccacgaacga atgtcgtggc 4560 gtgttccgag aaccagcccc aatcgtcgcc gcccttgccg tcaatcacgt ggatattgca 4620 gcagccggac aggtacagag ccaatacgat gaccatcatt ccagcggttt tgccgcttcc 4680 gggaatgcct cccacaacga ctccggacgt gttggtgaca atcagtgtgg cgtcgtttcc 4740 gttggcgagt tttcccaccg tgatcccgcc ggttgctggg tcgaacggcc gaagccggaa 4800 cggtagtggt tccggcttcg tgttgtggtt ccatggccat ttcatgcgac cactcccgtg 4860 atggggcgat ctagagcggt ctggacggtt tcgcctggcg aaagctgcaa tgtgattctg 4920 ccaggccttt tgctgtcctc gctgattgcg aacgaacggc agcgccatac gcgggcgttc 4980 aattgcaata gttccttgag atggtccgga gccattccgg cttcgccgcc tccgtcgaaa 5040 aacacgtagg tgtcgccccg ttgcttccat gtggttgcgg gaatgacgtg tgtcttgtcc 5100 gggtcgttgt aaatcttcgc ggtacgcagc gcggcgcagg tgtccacccg atcagctcgg 5160 gcgaccatgc cccagacggg caccatgtac acgatggcgg gcgaggctcc cgaccttatc 5220 ggacgccaga agattccgac gacgaacaag gcagcaacga gggcggtgag tccccagccg 5280 attgttttat agccggccat gaacaggacg gcgatcagtg cggcgggcag cagaatgctg 5340 agggcaaacg ccgtgccata gtccggcgac tgcttccgct cttcaatctt ctgctgatct 5400 tgcgtgctag tcattgtccg cctccgtgag gtcgaacgag gccgagaggt cacgcatata 5460 ctgtgcctgc gcgtgacggg tcatgtagcg gtcgtgcagg tactcccacg ctgtggcggt 5520 gacgcgcagc tcataccatt cggcaccgta gacatcgcgg tcgattatgg tcagccagcg 5580 aggccagtcg tcaccgagga gatcgcgggc gacctgagcg gcatcgccgc gagtctcaaa 5640 gctgattccg accatgttgg cgagaatccc atagcgcacg gccttttcgc cgtcacaggt 5700 gagatcgaag ccacagcgaa gcgcgtagtc gaggagcttt cggtcgagct 5750 //