ID AF080560; SV 1; circular; genomic DNA; STD; VRL; 1993 BP. XX AC AF080560; XX DT 04-NOV-1998 (Rel. 57, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 3) XX DE Beak and feather disease virus, complete genome. XX KW . XX OS Beak and feather disease virus OC Viruses; ssDNA viruses; Circoviridae; Circovirus. XX RN [1] RP 1-1993 RX DOI; 10.1006/viro.1998.9324. RX PUBMED; 9791035. RA Bassami M.R., Berryman D., Wilcox G.E., Raidal S.R.; RT "Psittacine beak and feather disease virus nucleotide sequence analysis and RT its relationship to porcine circovirus, plant circoviruses, and chicken RT anaemia virus"; RL Virology 249(2):453-459(1998). XX RN [2] RP 1-1993 RA Bassami M.R., Berryman D., Wilcox G.E., Raidal R.S.; RT ; RL Submitted (27-JUL-1998) to the INSDC. RL Division of Veterinary and Biomedical Sciences, Murdoch University, South RL Street, Perth, W.A 6150, Australia XX FH Key Location/Qualifiers FH FT source 1..1993 FT /organism="Beak and feather disease virus" FT /host="Cacatua galerita" FT /mol_type="genomic DNA" FT /cell_type="peripheral blood mononuclear cells" FT /db_xref="taxon:77856" FT rep_origin join(1..2,1987..1993) FT /note="similar to rep-origin of porcine circovirus, plant FT circoviruses and geminiviruses; nonanucleotide motif" FT stem_loop join(1..12,1976..1993) FT /note="similar to the structure responsible for replication FT of porcine circovirus, plant circoviruses and FT geminiviruses" FT CDS complement(62..544) FT /codon_start=1 FT /product="unknown" FT /note="ORF3; 17.7 kDa predicted protein" FT /db_xref="UniProtKB/Swiss-Prot:Q9YUD4" FT /protein_id="AAC69863.1" FT /translation="MPYVDFWELSRDFLHFASGHHGSNSSVERAVTVSRHNAQGEYNVP FT LFTAILLIISIATFSALKMGSRQQFLKRAQSLLIFKMKVALQMGGALLTLFASNDGIVE FT FVRPQRTDEFDLAVCRVVKGETPTATAGALLGRHGSRAGVILRRLRRRITPPFTPP" FT TATA_signal 86..89 FT /note="putative" FT CDS 131..1000 FT /codon_start=1 FT /gene="Rep" FT /product="putative replication-associated protein" FT /note="REP; similar to REP proteins encoded by porcine FT circovirus, banana bunchy top virus, coconut foliar decay FT virus, subterranean clover stunt virus and faba bean FT necrotic yellows virus; ORF1; 33.3 kDa predicted protein" FT /db_xref="GOA:Q9YUD3" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR003365" FT /db_xref="UniProtKB/Swiss-Prot:Q9YUD3" FT /protein_id="AAC69861.1" FT /translation="MPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEFYYAIVGREKG FT EQGTPHLQGYFHFKNKKRLSALKKLLPRAHFERAKGSDADNEKYCSKEGDVILTLGIVA FT RDGHRAFDGAVAAVMSGRKMKEVAREFPEVYVRHGRGLHNLSLLVGSSPRDFKTEVDVI FT YGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVVLDDFYGWLPYCEMLRLCDRYP FT HKVPVKGAFVEFTSKRIIITSNKPPETWYKEDCDPKPLFRRFTRVWWYNVDKLEQVRPD FT FLAHPINY" FT CDS 543..848 FT /codon_start=1 FT /gene="Rep" FT /product="unknown" FT /note="ORF5; 10.7 kDa predicted protein" FT /db_xref="InterPro:IPR007772" FT /db_xref="UniProtKB/Swiss-Prot:Q9YUD2" FT /protein_id="AAC69865.1" FT /translation="MGGAYITSRYWLVPAHVTSRLRLTSFTGHRGVARVDGPMSSLGLN FT IIKCAVNGGMDMTGKMSSSWTIFMGGYLIARCSASATVIHIKCQSRALLWSLPARG" FT variation 619 FT /gene="Rep" FT /replace="c" FT TATA_signal 680..686 FT /gene="Rep" FT /note="putative" FT CDS complement(755..1021) FT /codon_start=1 FT /product="unknown" FT /note="ORF6; 9.7 kDa predicted protein" FT /db_xref="UniProtKB/Swiss-Prot:Q9YUD1" FT /protein_id="AAC69866.1" FT /translation="MKTSPRLSVIDGVGEEVRPDLFQLVHVVPPNTCEPPEQWLRVTVL FT LVPGLGGLIARDNYPLAGKLHKSALDWHFMWITVAEAEHLAIR" FT CDS complement(1018..1278) FT /codon_start=1 FT /product="unknown" FT /note="ORF7; 8.7 kda predicted protein" FT /db_xref="UniProtKB/Swiss-Prot:Q9YUD0" FT /protein_id="AAC69867.1" FT /translation="MFNSVSLPLTIPALNKDSDSKYLFECLLAPSALTVFVVSGGPPGA FT PPPTQNTPSGLVGLSGLTALRALRQGVPPCGIGPSARRLAL" FT polyA_signal 1019..1024 FT /note="putative" FT CDS 1049..1369 FT /codon_start=1 FT /product="unknown" FT /note="ORF4; 11.2 kDa predicted protein" FT /db_xref="UniProtKB/Swiss-Prot:Q9YUC9" FT /protein_id="AAC69864.1" FT /translation="MPQGGTPCRRARRAVRPERPTSPEGVFCVGGGAPGGPPDTTNTVS FT AEGANKHSKRYLLSESLLSAGIVRGKLTELNIQSELGHISDRLFWLGEAECNAVVPDFR FT SR" FT variation 1102 FT /replace="g" FT variation 1127 FT /replace="g" FT polyA_signal 1196..1201 FT /note="putative" FT polyA_signal complement(1231..1236) FT /note="putative" FT CDS complement(1235..1978) FT /codon_start=1 FT /product="unknown" FT /note="similar to ORF2 of porcine circovirus; ORF2; 28.9 FT kDa predicted protein" FT /db_xref="GOA:Q9YUC8" FT /db_xref="InterPro:IPR003383" FT /db_xref="UniProtKB/Swiss-Prot:Q9YUC8" FT /protein_id="AAC69862.1" FT /translation="MWGTSNCACAKFQIRRRYARPYRRRHIRRYRRRRRHFRRRRFTTN FT RVYTLRLTRQFQFKIQKQTTSVGNLIFNADYITFALDDFLQAVPNPHALNFEDYRIKLA FT KMEMRPTGGHYTVQSNGFGHTAVIQDSRITKFKTTADQTQDPLAPFDGAKKWFVSRGFK FT RLLRPKPQITIEDLTTANQSAALWLNSARTGWIPLQGGPNSAGTKVRHYGIAFSFPQPE FT QTITYVTKLTLYVQFRQFAPNNPST" FT variation 1446 FT /replace="t" XX SQ Sequence 1993 BP; 425 A; 473 C; 608 G; 487 T; 0 other; acccgccgcc tggggcaccg gggcaccgca gctattggct gctctgccga ggtgcccgcc 60 cctagggagg agtaaatggc ggcgttatac gccgccgtaa tctccggagg atcacacccg 120 cccgggaacc atgccgtcca aggagggctc cggctgtcgc cgttggtgtt tcacccttaa 180 caaccctaca gacggcgaga tcgaattcgt ccgttctctg gggcctgacg aattctacta 240 tgccatcgtt ggacgcgaaa agggtgagca aggcaccccc catttgcaag gctactttca 300 ttttaaaaat aagaagcgac tgagcgcgct taagaaactg ctgccgcgag cccattttga 360 gcgcgctaaa ggtagcgatg ctgataatga gaagtattgc agtaaagagg gggacgttat 420 actcaccctg ggcattgtgg cgagagacgg tcaccgcgcg ttcgacggag ctgttgctgc 480 cgtgatgtcc ggacgcaaaa tgaaggaagt cgcgcgagag ttcccagaag tctacgtaag 540 gcatgggcgg ggcttacata acctctcgct attggttggt tccagcccac gtgacttcaa 600 gactgaggtt gacgtcattt acgggccacc ggggtgtggc aagagtagat gggccaatga 660 gcagcctggg actaaatatt ataaaatgcg cggtgaatgg tgggatggat atgacgggga 720 agatgtcgtc gtcttggacg atttttatgg gtggctacct tattgcgaga tgctccgcct 780 ctgcgaccgt tatccacata aagtgccagt caagggcgct tttgtggagt ttaccagcaa 840 gaggataatt atcacgagca ataagccccc cgagacctgg tacaaggagg actgtgaccc 900 taagccactg ttccggaggt tcacacgtgt ttggtggtac aacgtggaca agttggaaca 960 agtccggcct gacttcctcg cccaccccat caattactga tagtctcggt gatgttttca 1020 taaagctagg cgtcgggccg aaggcccgat gccgcagggg gggaccccct gccggagggc 1080 tcgcagggcc gtcaggcccg aaagaccgac cagcccggag ggcgtattct gtgtcggggg 1140 gggggccccg gggggtcccc ccgacacgac gaacacggtc agcgccgaag gcgccaataa 1200 acactcgaaa aggtatttgc tgtctgagtc tttattaagt gctgggattg ttaggggcaa 1260 actgacggaa ttgaacatac aaagtgagct tggtcacata agtgatcgtt tgttctggct 1320 gggggaagct gaatgcaatg ccgtagtgcc ggactttcgt tcccgctgag ttgggtcctc 1380 cttgtagtgg gatccagccg gttctggcgc tgtttagcca caatgccgca gactggttcg 1440 ctgtggtcag gtcctctatc gttatttgtg gtttgggtct gaggaggcgt ttgaatcccc 1500 tgctaacaaa ccatttcttg gcaccgtcga aaggtgccag agggtcttgt gtttggtctg 1560 cagtagtttt aaatttagtt attctggagt cttggattac ggccgtgtgg ccgaatccgt 1620 ttgattgtac ggtgtaatgt ccccctgtgg gcctcatttc cattttagct aacttaatac 1680 ggtagtcttc gaaattcagt gcgtgtgggt ttgggacggc ttgtaggaag tcgtccaacg 1740 caaatgttat gtagtcagca ttaaaaatta ggttgccgac actggtggtt tgtttttgaa 1800 ttttgaattg gaattggcgt gtgagtcgga gagtgtagac cctattggtt gtgaaacggc 1860 gcctgcggaa gtgcctacgt cgcctgcggt atcgcctgat gtgacgtctg cggtatgggc 1920 gggcatatct tcgtctaatc tgaaatttag cgcatgcgca gttagaggtg ccccacaggc 1980 ggcggttagt att 1993 //