ID AE002162; SV 1; circular; genomic DNA; STD; PRO; 7501 BP. XX AC AE002162; XX PR Project:PRJNA229; XX DT 14-MAR-2000 (Rel. 63, Created) DT 08-MAR-2010 (Rel. 104, Last updated, Version 10) XX DE Chlamydia muridarum Nigg plasmid pMoPn, complete sequence. XX KW . XX OS Chlamydia muridarum Nigg OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; OC Chlamydia/Chlamydophila group; Chlamydia. OG Plasmid pMoPn XX RN [1] RP 1-7501 RX DOI; 10.1093/nar/28.6.1397. RX PUBMED; 10684935. RA Read T.D., Brunham R., Shen C., Gill S.R., Heidelberg J.F., White O., RA Hickey E.K., Peterson J., Umayam L.A., Utterback T., Berry K., Bass S., RA Linher K., Weidman J., Khouri H., Craven B., Bowman C., Dodson R., RA Gwinn M., Nelson W., DeBoy R., Kolonay J., McClarty G., Salzberg S.L., RA Eisen J., Fraser C.M.; RT "Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae RT AR39"; RL Nucleic Acids Res. 28(6):1397-1406(2000). XX RN [2] RP 1-7501 RA Read T.D., Brunham R., Shen C., Gill S.R., Heidelberg J.F., White O., RA Hickey E.K., Peterson J., Umayam L.A., Utterback T., Berry K., Bass S., RA Linher K., Weidman J., Khouri H., Craven B., Bowman C., Dodson R., RA Gwinn M., Nelson W., DeBoy R., Kolonay J., McClarty G., Salzberg S.L., RA Eisen J., Fraser C.M.; RT ; RL Submitted (29-FEB-2000) to the INSDC. RL The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD RL 20850, USA XX DR GR; AE002162_GR. DR StrainInfo; 302228; 1. DR UniProtKB/Swiss-Prot; Q46438; GP2D_CHLMU. XX FH Key Location/Qualifiers FH FT source 1..7501 FT /organism="Chlamydia muridarum Nigg" FT /plasmid="pMoPn" FT /strain="Nigg" FT /mol_type="genomic DNA" FT /db_xref="taxon:243161" FT gene 98..1015 FT /locus_tag="TC_A01" FT CDS 98..1015 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="TC_A01" FT /product="virulence plasmid integrase pGP7-D" FT /note="identified by sequence similarity; putative" FT /db_xref="GOA:Q46435" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/Swiss-Prot:Q46435" FT /protein_id="AAF39715.1" FT /translation="MNSKFYHRSRLFLTFGEASEIWLSTLSPLTRKNYASGIKFLVSLK FT VLDLTKTLDNAISFDHSESLFKIKSLTIFNGKPVSEASKQARAACYISFTKFLYRLTKG FT YINPAIPLKDFGNTTFFKIRDRVKTVSISKKEWTVFFEALRLVSYRDYLIGKLIVQGIR FT KLDEILSLCMEDLFFASNQISFRIKKRQNKEINIPITFPFSLMKELKDYVGGRNGRVFI FT SEDGSPIATSQVVHNFKIAALRSAMTTKITPRVLRASALIHLKQMGLRDEEIMRVSCLS FT SKQSLCSYVCSGGNSSVANIPTIL" FT gene complement(1064..2086) FT /locus_tag="TC_A02" FT CDS complement(1064..2086) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="TC_A02" FT /product="virulence plasmid integrase pGP8-D" FT /note="identified by sequence similarity; putative" FT /db_xref="GOA:Q46436" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/Swiss-Prot:Q46436" FT /protein_id="AAF39714.1" FT /translation="MRLGYITRNFVGKGILSLQQEMPLEYIGKSYQEVLKIRQESYWKR FT MRSFSLFEVIMHWTASLNQHTCRSYRGSFLALEKIGLLSLDMNLQEFSLLNHNLILDAI FT KKIPSSKASWTEGTKQVRAASYISLTRFLNRMTQGIVSIAQPSKQENSRTFFKTREIVK FT TNAMNRLQTASFLKELKKINPRDWLIAQTMLQGGKRSSEVLSLEIDQICFQQATISFSQ FT LKNRQTEKRIIITYPQKFMHALREYIGPRRGLVFVTSSGKMVGLRQIARTFSQAGLQAS FT IPFKITPHVLRATAVTEYKRLGCSDSDIMKVTGHTTAKMVFAYDKSSREDNASKKMALI FT " FT gene 2154..3509 FT /locus_tag="TC_A03" FT CDS 2154..3509 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="TC_A03" FT /product="virulence plasmid helicase pGP1-D" FT /note="identified by sequence similarity; putative" FT /db_xref="GOA:Q46437" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR007693" FT /db_xref="InterPro:IPR007694" FT /db_xref="UniProtKB/Swiss-Prot:Q46437" FT /protein_id="AAF39713.1" FT /translation="MKTNSEIENRMQDIEYALLGKALVFEDCTEYILRQLVNYEFKCSR FT HKNIFIVFKHLKDNALPITVDSAWEELLRRRVKDIDKSYLGIMLHDAMFNDKLRPISHT FT VLLDDLSVCSAEENLTNFIFRSFNEYNENPLRRSPFLLLDRIKDRLDRTIAKTFSTRSV FT RGRSVYDIFSQAELGVLARIKKRRAAYSENNDSFYDGLPTGYQDIDSKGVILANGNFVI FT IAARPSIGKTALAIDIAINIAIHQRRRVGFLSLEMSAGQIVERIISNLTGVSGEKLQRG FT SLSEEEIFCIEEAGNTIRDSHLYICSDNQYKLNLIANQIRLLKRDDRVDVIFIDYLQLI FT NSSVGENRQNEIADISRTLRGLAAELNIPIVCLSQLSRKVEDRANKVPMLSDLRDSGQI FT EQDADVILFINRKETSPNCEITVGKNRHGSVFSTVLQFDPKTSKFSAIKKVW" FT gene 4703..5425 FT /locus_tag="TC_A04" FT CDS 4703..5425 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="TC_A04" FT /product="virulence protein pGP3-D" FT /note="identified by sequence similarity; putative" FT /db_xref="InterPro:IPR008444" FT /db_xref="UniProtKB/Swiss-Prot:Q46439" FT /protein_id="AAF39719.1" FT /translation="MTEPLTDQQIILGTSTTPVAAKITASEGISLTITNNAQANSSVNI FT GLDAEKAYQLILDKLGDQIFDGITGSIVESAVQDIIDKITSDPSLGLLKAFYNFQITGK FT IQCNGLFTSSNVTTLLGGTEIGRFTVTPRSSGSMFLVSADIIASRMEGGVVLALVKEGD FT TQPCAISYGYSSGVPNLCSLKTCVTNSGSTPTTYSLRIGGLESGVVWVNALSNGNDILG FT ITNTSNVSFLEVIPQKNT" FT gene 5494..5802 FT /locus_tag="TC_A05" FT CDS 5494..5802 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="TC_A05" FT /product="virulence protein pGP4-D" FT /note="identified by sequence similarity; putative" FT /db_xref="UniProtKB/Swiss-Prot:Q46440" FT /protein_id="AAF39718.1" FT /translation="MQNKRKLRNDFIKIVKDVEKDFPELDLKIRVNKERVTFLNSPLEL FT YHKSISLILGLLQQIEKSLELFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE" FT gene 5819..6625 FT /locus_tag="TC_A06" FT CDS 5819..6625 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="TC_A06" FT /product="virulence plasmid ParA family protein pGP5-D" FT /note="identified by sequence similarity; putative" FT /db_xref="GOA:Q46441" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/Swiss-Prot:Q46441" FT /protein_id="AAF39717.1" FT /translation="MEYTLQTLVFCSFKGGTGKTTLSLNVGCNLAQFLGKRVLLIDLDP FT QSNLSSGLGASIEGNHKGLHEVMCASNDLKSIICKTKKTGVDIIPASFLSEQFREFSTN FT GIPSSNLRLFLDEYCSPLYDVCIVDTPPSLGGLTKEAFIAGDKLIVCLIPEPFSILGLQ FT KIREFLISIGKPEEEHILGVALSFWDDRSSTNQTYIDIIESIYENKIFSTKIRRDISLS FT RSLLKEDSVINVYPTSRAATDILNLTHEISALLNSKHKQDFSQRTL" FT gene 6622..7362 FT /locus_tag="TC_A07" FT CDS 6622..7362 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="TC_A07" FT /product="virulence protein pGP6-D" FT /note="identified by sequence similarity; putative" FT /db_xref="InterPro:IPR005350" FT /db_xref="UniProtKB/Swiss-Prot:Q46442" FT /protein_id="AAF39716.1" FT /translation="MNKLEKEASVFFKKNQESVSQDFKKKVSSIEMFSTSLNSEENQSL FT DRLFLSETQNLSDEESYQEDVLSVKLLTSQIKAIQKQHVLLLGEKIYNARKILSKSCFS FT STTFSSWLDLVFRTKSSAYNALAYYELFISLPSTTLQKEFQSIPYKSAYILAARKGDLK FT TKVSVIGKVCGMSNASAIRVMDQLLPSSRSKDNQRFFESDLEKNRQLSDLLVELLRIVC FT SGVFLSPYNENLLQQLFEVYKQKS" XX SQ Sequence 7501 BP; 2468 A; 1262 C; 1417 G; 2354 T; 0 other; gcaactcttg gtggtagact tagtcgggat agacttttgt gtaaaaaaaa aataaactct 60 tgagactctg aatcagagtc atattgttta agaaaagatg aactcaaaat tttaccacag 120 aagtaggcta ttcctaactt ttggagaagc ttcggaaatt tggttgtcaa cgttgtcccc 180 gctaactaga aagaattatg catctggaat taagttttta gtttctctga aggttttgga 240 tttaaccaaa accttagata acgccatttc ctttgatcac agcgagtctt tgtttaagat 300 caaatctcta accattttta atgggaaacc tgtttcagaa gcttctaaac aagccagagc 360 tgcttgttac atatcattta ctaagttttt gtacagattg actaaggggt atattaatcc 420 tgctattcct ttaaaagact ttggtaacac tacatttttt aaaattagag atagagtcaa 480 aacagtttcg atttctaaga aggagtggac ggtatttttt gaagcgcttc gtttggtgag 540 ttatagagac tatctaattg gcaaattaat tgtgcaaggc attaggaagt tagacgagat 600 tttatctttg tgcatggagg atctcttttt tgcatctaat caaatttcgt ttcggattaa 660 aaaaagacaa aataaagaga ttaatatccc tattacgttt cctttcagtt tgatgaaaga 720 attgaaagat tatgttggtg gaagaaatgg gcgtgtgttt atttctgagg atggatctcc 780 cattgcaaca agtcaagtag tgcataattt taaaatagca gcgcttcgga gcgcaatgac 840 aactaaaatc actcccagag tgcttcgagc tagcgcgttg attcatttga aacaaatggg 900 attaagagat gaagaaatta tgcgagtttc ttgtctttcc tcgaagcaaa gtttgtgttc 960 ttatgtttgt tctggcggga actcttctgt cgcaaatata ccaactatat tgtgatataa 1020 ttaaaattat atccatttag ttgccctcaa aagcaactgt agattatatt agggccatct 1080 tctttgaggc attgtcttct ctagaggatt tatcgtacgc aaataccatc tttgcggttg 1140 tgtgtcctgt gaccttcatg atgtcggagt ccgaacaccc taggcgtttg tactctgtca 1200 cagcggttgc tctaagcacg tgaggggtta tcttaaatgg gatagatgct tgcagtcctg 1260 cttgagagaa cgtgcgggca atttgtctta accccaccat ttttccagaa ctagttacga 1320 agaccaaacc tcttcgtggc ccaatgtact ctcttagagc gtgcatgaac ttctgaggat 1380 aagttataat aatcctcttt tctgtctgac gattcttaag ctgggagaaa gagatagttg 1440 cttgttgaaa gcagatctga tcgatctcta agcttaagac ttcagaagaa cgcttacctc 1500 cttgcagcat agtttgggcg atcaaccaat ctctgggatt gatttttttt agttctttca 1560 agaaagaagc tgtttgcaat ctattcattg catttgtttt tacaatttct ctggttttga 1620 aaaatgttcg gctgttttct tgtttagaag gttgtgcgat agaaacaatt ccctgagtca 1680 ttctgtttaa aaatctagtc aaagagatat aactagctgc acgaacttgt ttggtgcctt 1740 ctgtccatga agcttttgac gatggaatct ttttaattgc atccaatatc aagttatgat 1800 tcaaaagaga aaattcttgt agattcatgt ctaaagacaa tagcccaatc ttttctaaag 1860 ctaaaaaaga gcctcggtaa gatctacaag tatgctgatt tagtgatgca gtccaatgca 1920 tgataacttc gaataaagag aagcttctca tgcgtttcca gtaagattct tgtcggattt 1980 ttaatacttc ctgataagac tttccgatat attctaatgg catttcttgc tgcaaagata 2040 aaatcccttt acccacgaaa ttcctcgtga tataacctaa acgcaaatgt cctgattagt 2100 gaaataatca ggttatcatt aggatagcac gcgctgcatt tttttagaaa agcatgaaaa 2160 ctaattctga aatagaaaac cgcatgcaag atattgagta tgcgttacta ggaaaagctt 2220 tggtatttga agactgtaca gagtacattc ttaggcaact tgttaattac gaattcaagt 2280 gctctcgcca taaaaacata ttcattgttt ttaaacactt aaaagacaac gctctgccaa 2340 taactgtaga ttcagcttgg gaagagctgt taagaaggcg tgtcaaagat atagataagt 2400 cttatctcgg tataatgtta catgatgcca tgtttaacga taagctcagg cctatttcgc 2460 atacggttct tttagatgac ttaagtgtat gtagcgctga agaaaattta actaatttca 2520 tttttcgttc gtttaatgaa tataacgaaa atccattgag acgatcacca tttttactat 2580 tagaccgcat aaaagatcgt ctcgacagaa ctatcgcaaa aactttttct actcgtagcg 2640 ttagaggacg atctgtttat gatatctttt ctcaagcaga actcggagta ttagctcgta 2700 taaaaaaaag aagggcggct tattctgaga ataatgattc attttatgac ggcttgccaa 2760 ccggatatca agatattgat agtaaagggg ttattttagc gaacggcaat tttgtgataa 2820 ttgcagctcg gccttctata gggaaaaccg cactcgctat tgatatagct atcaatattg 2880 ctatccatca acgacgtaga gttggttttt tatctcttga aatgagtgca gggcaaatag 2940 ttgaaagaat tatttctaac ttaacagggg tatctggaga gaaattacaa aggggctctc 3000 tatctgaaga agagattttt tgcattgaag aagcaggaaa tactataaga gattctcatc 3060 tttatatttg tagtgacaac caatataagc tcaatttgat agcgaatcaa attcgtttgt 3120 taaaacgaga tgatcgtgtc gacgttattt ttatcgatta cttacaactt attaactcat 3180 ctgttggaga aaatcgacaa aatgaaatag cagatatatc tagaacttta agggggttag 3240 ctgcagagct aaacattcct atagtttgtt tgtctcaatt atccagaaaa gtcgaggata 3300 gagcaaacaa agttcctatg ctgtcagacc taagagatag cggtcaaata gaacaggatg 3360 cagatgtaat tttgttcatc aatagaaagg aaacttctcc taattgtgaa ataacagtgg 3420 gtaaaaatag acatggatcg gttttctcta ctgtattaca gttcgatcca aaaacaagta 3480 agttctctgc tattaaaaaa gtatggtaaa ttatagcaac tgtcacttca ttagaagtcc 3540 tattcatctt gagaatcaga agtttggtag aagaccaggt caattaatca agatatctcc 3600 taagttagct caaaatggct tagtagaagt cataggtctt gactttcttt cttctcatta 3660 ccacgcacta gctgctatcc agagattact tacagctaca aattataagg ggaatacaaa 3720 aggagttgta ttatcaagag aatcaaacag cttccaattc gaaggttgga ttcctcgaat 3780 tagatttaca aaaacagagt tcttagaagc ttacggcgta aaacgataca aaacatctag 3840 aaacaaatac gaatttagtg ggaaagaatc tgaaacagct ttagaggctc tgtatcattt 3900 aggacatcaa cctttcttga tagtggcaac cagaactcga tggaataatg ggacgcctat 3960 tttagatcgt tatcaaaccc tttcgcctat tattagaatt tacgaaggat gggaaggtct 4020 aactgatgaa gaaaatacag aaattgatgt aacaccattc aattcaccat caacacgaaa 4080 gcataaagga ttcattgtag aaccttgtcc catcttggta gatcaaatag actcttattt 4140 cgtagtcaag cctgcgaacg tataccaaga aataaaaatg cgtttcccaa acgcatcaag 4200 atatgcttac acctttattg attggataat tactgcatct gccaaaaaga aaagaaaatt 4260 gaccaaagag aattcttggc cagaaaactt gtctctgaat gttaacgtta aaagccttgc 4320 gtatatttta aggatgaatc gatatatcag cacaagaaac tggaaaaaaa ttgaaatggc 4380 tattgataaa tgtgttgaaa tagctattca actaggttgg ttatctagtc ggaaacgagt 4440 agagttctta gaagcatcta agctgtctaa aaaagagatc ttgtatttaa acaaagaacg 4500 ctttgaagaa ataacaagaa aatcaaaaga acaaatgaat caattcgagc aagaatttaa 4560 ttaaaaaata gcaaaacttg aaactaaaaa ccaaatttat ttaaagctca aaataaaaag 4620 agtttttaaa atgggaaatt ctggttttta tttgcataac actagcaact gtgtatttgc 4680 cgacaatatt aaagttgggc aaatgacaga acctcttaca gatcaacaaa taatacttgg 4740 gacatcgaca actcctgtcg cagcaaaaat aacagcttct gaagggatat ccttaacaat 4800 aacaaacaat gctcaagcta actcttcagt aaatattgga ttagatgctg aaaaagcgta 4860 ccaacttatt ttagataagc ttggcgacca aatctttgat ggaatcacag gatccatagt 4920 tgagagtgct gtacaggaca ttatagataa gattacctcg gacccttctc taggattgtt 4980 gaaggctttc tataacttcc aaatcactgg gaaaattcaa tgtaacggcc tattcacatc 5040 tagcaatgta acaactttat taggaggaac agaaataggt agatttacag taactcctag 5100 aagttctgga agcatgtttt tagtttctgc agatatcatt gcatcaagaa tggaaggtgg 5160 agttgtatta gccttagtaa aagaaggaga tacacaacca tgtgcgatta gctatggcta 5220 ttcttctggt gtgcccaatt tatgtagctt aaaaacctgt gttactaatt ccggatcgac 5280 acccacaact tattcattac gaataggagg attagagagc ggagttgtat gggttaatgc 5340 tctatccaat ggtaatgata ttcttggaat aacaaatact tctaacgttt cttttttgga 5400 ggtgatacct caaaaaaaca cttaaataat tttattggaa ttttcttatc ggttttatat 5460 ttagaagaaa cagttctaat tacgggggtt gttatgcaaa acaaaagaaa actgagaaac 5520 gattttatta aaattgttaa agatgtagaa aaggatttcc ccgagctaga cttgaaaata 5580 cgggtgaata aggaaagggt tactttttta aattcaccct tagaactcta ccacaagagt 5640 atttcattaa ttttaggctt gttacaacaa atagaaaagt ctttggaatt atttccagat 5700 tcccccgttc ttgaaaaatt agaggataac agtttaaagc taaaaaaagc gttgattatg 5760 cttattctgt ctagaaaaga catgttttct aaggcagaat agatgtttta ctctaacgtt 5820 ggagtacact ttgcaaacct tagttttttg ctcttttaag ggtgggacag gaaaaacaac 5880 actttccctg aatgtagggt gtaatttagc tcaattttta ggaaagagag tacttctaat 5940 tgacctagat ccccaatcaa atctctcatc tggattgggg gctagcatcg aaggcaacca 6000 taaaggcctt cacgaagtga tgtgtgcctc aaatgattta aaatcaataa tttgtaaaac 6060 aaaaaaaact ggggtagaca taatccctgc atcatttttg tcagaacaat ttagagaatt 6120 ttctacaaat ggcatcccaa gcagcaattt acggctgttt ttagatgagt attgttcgcc 6180 tttatatgat gtgtgcatag tagatactcc acctagtctt ggtggattaa caaaagaagc 6240 ctttattgca ggagacaaac taatcgtatg tttgattcct gagccatttt ctattctcgg 6300 gctgcagaaa attagagaat ttttaatttc tataggcaaa cctgaggaag aacatattct 6360 tggggtagca ctatcttttt gggatgaccg gagttcgact aatcaaacgt acatagatat 6420 cattgagtca atttacgaaa ataagatttt ttcaacaaaa atacgcagag atatttcttt 6480 gagtcgttcc cttcttaaag aggattctgt gatcaatgta tatccaactt caagagctgc 6540 aacagatatt ctgaatttaa cacacgaaat atctgctctt ttaaattcta aacacaaaca 6600 agacttttcc cagaggacac tgtgaataaa ctggaaaagg aagctagcgt cttttttaaa 6660 aaaaatcagg aatccgtttc tcaagacttt aagaaaaagg tttcttcaat tgagatgttt 6720 tcaacttctt taaattcgga ggaaaaccag agtctggatc ggcttttttt gtctgagact 6780 cagaatttat cagatgaaga atcttaccaa gaagatgttt tgtcagtaaa acttctgaca 6840 agtcaaataa aggctattca aaaacaacac gtgctccttc ttggagagaa gatttacaat 6900 gcgagaaaga tactaagtaa aagttgtttc tcttcaacaa ccttttcatc ttggctagat 6960 ttagttttca ggactaaatc atccgcctat aatgcgttgg cttattatga acttttcata 7020 agtctaccaa gcacaacttt gcagaaagag ttccaatcaa tcccgtataa gtctgcatat 7080 attttagctg ctaggaaagg agacttaaaa acaaaagtct ctgttatagg gaaagtttgt 7140 ggaatgtcca atgcatctgc tatccgggtt atggaccaac ttcttccttc atctagaagt 7200 aaagataatc aaagattttt cgaatctgat ttagagaaaa atcgacagtt atcagatctt 7260 ctcgtagaac tgcttcgcat tgtatgttct ggagttttct tatctcctta taacgaaaac 7320 cttctgcagc agttgtttga agtctataag caaaagagct gatccgccgt cagctcttat 7380 atatatatct attatatata tatattttag ggattcgatt ttacgagagc ttcgcgcaac 7440 tcttggtggt agaccttgca actcttggtg gtagaccttg caactcttgg tggtagacct 7500 t 7501 //