ID AB553581; SV 1; circular; genomic DNA; STD; VRL; 5813 BP. XX AC AB553581; XX DT 01-MAR-2011 (Rel. 108, Created) DT 03-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Chaetoceros lorenzianus DNA Virus DNA, complete genome. XX KW . XX OS Chaetoceros lorenzianus DNA Virus OC Viruses; unassigned viruses; Bacillariodnavirus. XX RN [1] RP 1-5813 RA Tomaru Y., Nagasaki K.; RT ; RL Submitted (02-APR-2010) to the INSDC. RL Contact:Yuji Tomaru National Research Institute of Fisheries and RL Environment of Inland Sea, Fisheries Research Agency; Maruishi 2-17-5, RL Hatsukaichi, Hiroshima 739-0452, Japan XX RN [2] RX DOI; 10.1128/AEM.00202-11. RX PUBMED; 21666026. RA Tomaru Y., Takao Y., Suzuki H., Nagumo T., Koike K., Nagasaki K.; RT "Isolation and characterization of a single-stranded DNA virus infecting RT Chaetoceros lorenzianus Grunow"; RL Appl. Environ. Microbiol. 77(15):5285-5293(2011). XX FH Key Location/Qualifiers FH FT source 1..5813 FT /organism="Chaetoceros lorenzianus DNA Virus" FT /host="Chaetoceros lorenzianus" FT /lab_host="Chaetoceros lorenzianus" FT /strain="ClorDNAV01" FT /mol_type="genomic DNA" FT /country="Japan:Hiroshima, Itsukaichi Fishing Port" FT /lat_lon="34 N 132 E" FT /isolation_source="Sea water" FT /collected_by="Yuji Tomaru" FT /collection_date="20-Apr-2007" FT /identified_by="Yuji Tomaru" FT /db_xref="taxon:754441" FT misc_feature 207..1185 FT /note="ClorDNAV genome is a covalently closed circular FT single-stranded DNA genome (5,813 nt) that includes a FT partially double-stranded DNA region (979 nt)" FT CDS complement(1299..2294) FT /codon_start=1 FT /transl_table=1 FT /gene="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:E9RFF0" FT /protein_id="BAJ79014.1" FT /translation="MGPTHNELAKAHDLSGRFQFDRCYDLGAQSDPRYWGNYIDTSNVS FT GFQEQAYVNKDGLAIRINPTTGYKELFIAGTRSPLEWVQNVAEGIGITATENEELLHAV FT GGAEKAKLAYQAKYASALDPLGAIALSGVKNISGISVDARDEWADYIDKLVEAEGIEVV FT YGHSRGSAIMSAMESEVKYISLDGAMIIAHPKSEFLNLQSGRGGVDLALAPNYKNNLVI FT EDRAFHNVSRPVHTRKKKAKASKEAVTRHKQRSRQKRDRSRHQKTSDRIKVLDKLLGRK FT RPRDQKVIMEKAIKKQKVKKQLTLLKERPKKRPPKKRKHKRKRGRPFQRS" FT CDS complement(2397..3569) FT /codon_start=1 FT /transl_table=1 FT /gene="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:E9RFF1" FT /protein_id="BAJ79015.1" FT /translation="MAGRRKQRRSRAPRRKRTTGRKTLKRKADSRATPAKSTRKRTKTV FT SGAAKHHAVRVKPFSNATTQPKIPDGLLTSSLSRRLQNVVGVRNGNSPSVHAGSDVMHV FT VIAPTLGVPVMIANSAEGVLKRPGLSQESSFIGFPGQTVGFENLIESTGVPTWPPTIPT FT GQKLENKGGFVLWRIISQGLRIDLANSDEENDGWFEACRFNWRNVPRDVCMTPLDGSTT FT TNSIGIAPNPLWLEEVGYGMAMVEQPGYKSGLLKDIKKAEFMLHPRTTTHDPTLIDPFE FT YGGSMTSSGGIDNVYYPSDNVSGNAVRFRDMGVDQNMDWIYIRLHCRPNNGTSSLGSNF FT LFNVIQNVEVAFNPSSDFAAFQTINKADTKTKMVADGLNNNPDVFNGRRK" FT CDS 4217..5812 FT /codon_start=1 FT /transl_table=1 FT /gene="putative replication-associated protein" FT /db_xref="UniProtKB/TrEMBL:E9RFF2" FT /protein_id="BAJ79016.1" FT /translation="MRQKSINEILCNGLPQQELLPSESVFSDSAESRLLKEWVNDFSDS FT SPIGLDLGSLDTVPEFDVASSKRASSLTTPGTLNPIQPLSRPLVRSTAVDMTPSETEDE FT LSGTHQDPCSKKDQLLSRFILTFFPETKEDRWMEPDTYFPGAVELFHVWTGQYEECPTT FT KRLHAHIYVEMLTNRRKRFNAFHKHIRKFHKGVQIRSARRCSVKQRQCAINYVLDDRKR FT LEGSDTYTWRHSHFEPKYDSKFEKTKEMVKRGEDSETQRVYIESKPRMWTWDQIVHETD FT ESKKLLFNCSWGNKYHAGRVAEVSRRTIQQVIILYGAGGTGKTTTVQSWDARENEDPRE FT RYYRRNPDDGAFWGGGRTAYRGQRIVHYEEFTGQEAFCRLKEVCDIGKHGPPVNVKMGG FT TDLNHEIVIFTTNVHPAGWFHKLWANDPKQFHPFWRRVTKVMFYPSHRPDGQLNCPDDE FT HPPHVVDQTEDWQSFKGDYAKCLNHAEKFWPLKLEPESTPFSRDFGHSRGQTEQSTPFF FT HYCKSGRDPTKRSI" XX SQ Sequence 5813 BP; 1580 A; 1422 C; 1195 G; 1616 T; 0 other; ttaatatata atttctctta agttcttttt ttttcttttt ttttctttcg ttcgcggaaa 60 atctgttcgt cgctacgcaa cacagagggt tttcctacac taagtggaag gcgcacttcg 120 tgcgtattcg atcgctacgc tcccgtcgtg gtcgttttaa cactttacca agtgtttggt 180 cactccacaa ttggtctact accatgccgg tggctcaaac cctagtcatc tcggataatc 240 ggagtatcta tttctccgat acggtgtaat aataaccccg tatcgccgac ctccgcgtga 300 cgtcagcatg acgcaacgct tcggtcgtgc acgattgaat gagaaggcgc aaaaagactt 360 ccgaacacca atcaatcgtt tcaaattgtc aatttcaatc gtttcaaatt tattttcaat 420 cacttctcct ctcataaaat caaaaattac taatttacaa ctacaaacat gccaaccgga 480 acccctttac ccgtatgcac tctatcctct aacggattca acatcatcaa cgagcttggt 540 atgattgttg catccaaaga tccagagctt tactgccccg atctcgctca caccgtcaat 600 tggttctcca ttgaagacca acaatggtgg aacggcgctt actggtggag aatgaacggc 660 gaatgggtcg cacctgtcgg attcgaagac gccgttacgg aacttgtccg gtccggtgtc 720 tatccggcaa tccacaaaga cttttggcag atggtactta cacttctgga tcagaaatgg 780 cagatcaacg accgttgggt actaccactc ttcccagatg gtaacaacgc acacctattg 840 atgcacgctc ctgtccacga gacgttcaat tacctcactc cacactactg caaagtcgct 900 gagattggtg acaacattgg aatggaactt gaaaataaca accaagacga tgtttcatgt 960 atcacggatt acacttacac cgaagacaac gacgaggtta gctttagtga cttccttgtc 1020 atgttcggac cggaattctc cgaagcgtct actgtcattg aggagggaac ggagctaaat 1080 ccgatcgatc tcactgatct tagtcttgcc acgactgcag atctcactct agactcatag 1140 actctaaata tttagctttt atttatatac aaatactttt ttttcttttt ttctctcttt 1200 tttttatgtt tattatgccc catattccga taaacattgc ggtttgttaa ccccttcccc 1260 tagttaacaa caacctaacg taaatctaag ttattaaatc aagaacgctg aaaaggtctc 1320 ccacgtttcc gcttatgctt cctctttttg ggaggccttt tctttgggcg ttctttaagc 1380 aaagtcaatt gcttcttgac tttctgtttt ttaatagcct tttccataat aaccttctgg 1440 tcacgtggcc gtttacgacc aagtaattta tccagaacct ttatcctatc agaagtcttc 1500 tgatgccggg accgatccct tttttgacga gatcgctgtt tatgacgcgt aacggcctct 1560 ttcgatgcct tagccttttt cttacgcgta tgcacaggtc tcgagacgtt atggaaagct 1620 ctatcctcga tcaccaaatt gtttttgtaa tttggcgcta aagctagatc tactccacct 1680 ctacctgatt gaagattcag gaattcggat tttggatggg ctattatcat agcaccatct 1740 agtgagatgt acttcacctc agattccata gcagacataa tcgcagaacc acgactatgt 1800 ccgtacacta cttcgatgcc ttcggcctct actagtttat ctatgtaatc cgcccactca 1860 tctcgtgcat ctacagagat acccgatata ttctttacac ctgacaacgc tatagcccct 1920 aaaggatcta aagccgaggc atatttagct tgataagcta atttagcctt ttcagctccc 1980 ccaaccgcat gcaacaactc ttcgttttct gttgcagtaa tcccaatacc ttcggcgaca 2040 ttctgcaccc actctaatgg gctccgagtg cctgctataa agagttcttt atatccggtg 2100 gtgggattaa tgcggattgc gagtccgtct ttattgacat acgcctgctc ttggaagccg 2160 gagacgttgg atgtatcgat atagttaccc caatatcttg ggtcagattg ggctccaaga 2220 tcgtaacatc tatcgaactg gaagcgcccc gacaaatcgt gcgctttagc cagttcatta 2280 tgtgttggac ccatgttata ttctccattg ttataaccct gtggggatgg taaaccatct 2340 aatacattag aatctaacca gaaaactatt acataatcaa atcaatttaa aaacatctac 2400 ttacgtcgac cgttaaaaac atctggatta ttattaagac cgtcagccac cattttggtt 2460 tttgtgtcgg ccttattaat agtttgaaag gcagcaaagt cactggaggg attaaaagct 2520 acttcaacgt tctgaattac gttgaaaagg aagtttgaac ccaaactact tgtcccgtta 2580 ttaggtctac agtgcaatcg gatgtaaatc caatccatgt tttgatcgac acccatgtct 2640 ctaaaacgta cggcattacc cgacacgtta tcggacgggt aataaacatt gtctatacct 2700 ccagaagacg tcatagaccc accatactcg aacgggtcaa ttagcgtggg atcgtgcgta 2760 gttgtacgcg ggtgtaacat aaactcagcc tttttaatgt cttttaagag acccgattta 2820 taaccgggtt gttccaccat agccatccca taacccacct cttctaacca gagggggttg 2880 ggagctatgc ctatcgaatt ggtggttgta gaaccatcca atggcgtcat gcacacgtca 2940 cgaggcacgt tcctccagtt aaaacgacac gcctcaaacc aaccatcatt ctcctcgtca 3000 gaattggcta aatcaattct taaaccctga gatatgatgc gccacaacac aaaccctccc 3060 ttattttcca gtttctggcc agtagggatg gttgggggcc acgtggggac gccggtggat 3120 tcaattaaat tctcaaagcc aacggtctgt ccaggaaatc ctatgaagga tgattcctgg 3180 gacaaaccgg gtcttttcaa caccccctct gcagagttcg caatcatgac gggtaccccc 3240 aaagttgggg ctatcaccac atgcattaca tcactgcctg cgtgcacgga aggagaattc 3300 ccgttcctta ccccgacaac gttctgtagt cgtcgggata agctggatgt taacaatcca 3360 tcgggaatct tgggttgagt agttgcatta gaaaacggtt tcacgcgaac agcgtgatgc 3420 ttcgcagcac cgctaactgt cttggtcctc ttcctcgtag acttagcagg ggtagccctg 3480 ctgtctgcct tacgcttcag agttttccta ccagtcgtgc gttttcttct tggagcacgg 3540 ctacgccgtt gctttcttct accagccata ccttgcaata cagttctaat acacaagaac 3600 ttattttatg acacgagtac gtgtcacgag ttgacagcaa gtgtcaacat tttgtacagt 3660 ttttttcaaa actgtactgt tctaaaaact gtacagtttt tgatatacca gagatacgta 3720 gaatcctacg taaaatggac gaaaaggaat aatattaact taatcctttt cgtccatttt 3780 atagtgtgac atgttgagtc ccgcctgtta ttaaccaata cagcccccat cccataatgc 3840 ggcctgaggg cctatcatct tgcgctggta gcgcgctttc tttctgtttt ggcaggcgag 3900 tattgccctg gcaggcggcg tcctacggca ggcgctcgtg gtcaatacaa catgtccatt 3960 ataccaacgt aagattctga tactaacgcg attttttggt ctcaaacaag tatgggggtg 4020 gtaaccaacc ccaatgcaaa aatgcatcac gaacacaaag gatgttccaa ttaaccttta 4080 tgtaacggac ttcttgtttt caatcgttcc aaaactcacc aatgtacaga tgcgaaaaaa 4140 agatcagtca gatcataaac aactgccttc ctttttttca taaaaattgt aatgagctac 4200 aacacgtaca ttcgcaatga gacagaaatc aatcaacgag atactatgca acggcttacc 4260 gcagcaagaa ctcctcccct ccgagtccgt attctcagac tccgcagagt cccgtctttt 4320 aaaagagtgg gtgaacgatt tctccgattc ctcgccaata ggtctagact tggggtcact 4380 ggatacagtc ccagagttcg acgtagcatc ttcgaagagg gcatcgagtc tgactacgcc 4440 tgggacgctg aatccgatac agccactgag tcgtccgtta gttcgctcga ctgcagtaga 4500 catgacaccg agtgagacgg aagatgaact atccggcaca caccaagacc catgctcgaa 4560 aaaggatcag ttattatcaa gattcattct caccttcttt ccagaaacca aggaagaccg 4620 ttggatggaa cccgatacat attttcctgg cgcagttgaa ctattccacg tatggacagg 4680 ccaatacgaa gaatgtccaa ctacaaaacg tttgcatgct catatctatg tcgaaatgct 4740 tactaaccgt cgtaaacgtt tcaatgcatt ccacaaacat attcgaaagt ttcataaagg 4800 cgttcaaatc aggagcgcac gccggtgctc cgtaaaacaa cgtcaatgtg cgattaacta 4860 cgttttagac gaccgtaagc ggctagaggg gtcagacacc tatacctgga gacatagtca 4920 cttcgaacct aaatacgatt cgaaatttga aaaaaccaag gaaatggtga aacggggcga 4980 agatagcgaa actcaaaggg tttacatcga gtcaaagcct cggatgtgga cttgggatca 5040 gatcgttcat gagaccgacg aatccaagaa acttttattt aattgctcat ggggcaataa 5100 ataccatgct ggtcgtgtcg ctgaggtatc aagaagaacg atccaacaag tcatcattct 5160 ctacggtgcg gggggcaccg gcaagacaac cacggttcaa tcgtgggatg ctcgcgagaa 5220 cgaagacccc agagagcgtt attacagacg taatcctgac gatggagctt tctggggtgg 5280 aggtcgtact gcctacagag ggcagcgaat tgtacactac gaggaattca ctggtcagga 5340 agctttctgt aggttgaaag aggtgtgcga catagggaaa cacggtccac ctgtcaatgt 5400 caagatgggc ggtaccgatc ttaatcatga gattgtcatc ttcactacta acgtgcatcc 5460 agctggttgg tttcataaat tgtgggctaa cgaccctaaa caatttcacc ccttttggcg 5520 cagagttact aaggttatgt tctatccgtc tcacagacct gatggacagc ttaattgccc 5580 tgacgacgag caccctcctc atgtcgtcga ccagactgaa gattggcagt ctttcaaggg 5640 cgattatgca aaatgtctca atcacgctga gaaattttgg ccactgaaat tggagccgga 5700 atctacaccc ttcagtcgtg actttgggca tagtagagga caaactgagc aatcaacacc 5760 attctttcat tattgcaagt cgggaaggga cccaactaaa cgtagtatct aaa 5813 //