ID AB543507; SV 1; circular; genomic DNA; STD; VRL; 7251 BP. XX AC AB543507; XX DT 27-JUL-2010 (Rel. 105, Created) DT 12-APR-2011 (Rel. 108, Last updated, Version 2) XX DE Bovine papillomavirus type 11 DNA, complete genome. XX KW . XX OS Bovine papillomavirus type 11 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Xipapillomavirus. XX RN [1] RP 1-7251 RA Hatama S.; RT ; RL Submitted (25-JAN-2010) to the INSDC. RL Contact:Shinichi Hatama National Institute of Animal Health, Hokkaido RL Research Station; 4 Hitsujigaoka, Toyohira, Sapporo, Hokkaido 062-0045, RL Japan XX RN [2] RC Publication Status: Available-Online prior to print RX DOI; 10.1007/s00705-011-0970-7. RX PUBMED; 21424729. RA Hatama S., Ishihara R., Ueda Y., Kanno T., Uchida I.; RT "Detection of a novel bovine papillomavirus type 11 (BPV-11) using RT xipapillomavirus consensus polymerase chain reaction primers"; RL Arch. Virol. 156(7):1281-1285(2011). XX FH Key Location/Qualifiers FH FT source 1..7251 FT /organism="Bovine papillomavirus type 11" FT /host="Bos taurus" FT /mol_type="genomic DNA" FT /country="Japan" FT /note="type 11" FT /db_xref="taxon:714200" FT CDS 37..456 FT /codon_start=1 FT /transl_table=1 FT /gene="E5" FT /product="E5 protein" FT /db_xref="UniProtKB/TrEMBL:E1CGB7" FT /protein_id="BAJ12072.1" FT /translation="MQAHLECESLKFIGHKTNCCSQLGYKTVCKTADWRLAIASTDTVH FT RLRSRISRLVSVVINNHLCNKINLHLIRLYRFGCIYKAAGRGLVHEALASSTMSLWCIY FT LLLLFWCGFNFLALCFAIILYLLMISTITRLDGWD" FT CDS 716..1012 FT /codon_start=1 FT /transl_table=1 FT /gene="E7" FT /product="E7 protein" FT /db_xref="GOA:E1CGB8" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:E1CGB8" FT /protein_id="BAJ12073.1" FT /translation="MKGPNVTLEGIAADLENAVSPINLNCEEEIDTEEVELPNPFEITA FT TCYVCEKILRLAVVTSNDGIHQLQQLLFENLSLLCSACSRDVFCNRRPVKNGP" FT CDS 1002..2822 FT /codon_start=1 FT /transl_table=1 FT /gene="E1" FT /product="E1 protein" FT /db_xref="GOA:E1CGB9" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:E1CGB9" FT /protein_id="BAJ12074.1" FT /translation="MDPKGITVLDFIDEQAECSQSDSEEGCEESVSDLSDLIDNAEYEQ FT GNSAELFAQQQAFDFHKDLCATKRKLNLPQRKPLQCITSQDNISPRRAAGKRRILDDSG FT YNEDLSTEVAQVVENGGSEGYGSLVSQGLGTQEVRRRSSAEKENGDCIAVLRAGSQRAA FT YLAIFKEKFSISFSSLTRLFKNDKTCCTNWVGAIFRAREELLEASKTILQKSCDHLMLL FT THTCKYGFMALYLLDFKTSKSRETVRNMFGNLLQVEKDDMLLEPPKLKSLPAATFWWKI FT RHSNNSFTWGEVPNWISRQTSITHQIADDEPFNLSEMVQWAYDHDLTDEAKIAYYYARL FT ASEESNAAAFLRCNQQVKHVRECAQMVKYYKTAEMHEMSMGQWIKKCIDNIEGEGDWRE FT ICKFLKYQQVNFLSFLSALKDLLHSVPKRNCMVIHGPPNTGKSMFVMSFMRSLKGRVLS FT FVNAKSHFWLQPLNSAKVAILDDATHATWKYFDTYLRNGLDGTPVSLDMKHRAPMQVCF FT PPLMITSNIDIMKDPAYMYLHSRLVCFEFPNPFPLDEAGNPVVLINELSWKSFFARLWR FT QLELTDPDEEEDGEPRSPFRCCARVLATNL" FT CDS 2764..3993 FT /codon_start=1 FT /transl_table=1 FT /gene="E2" FT /product="E2 protein" FT /db_xref="GOA:E1CGC0" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:E1CGC0" FT /protein_id="BAJ12075.1" FT /translation="MASLEARFDAVQESLLQIYESESSSLELCYQYWQLIRKENALYFT FT ARQQGKTRLGLYAVPATRVSEQKAKDAIKMTLYLESLKQTQFATERWTLMDTSSETFMA FT PPENTFKKRGQHVTVVYDHDANNSMLYTLWTELYYLDTSDTWHKTTSSVDYDGIFYIDI FT YGTKIYYINFQDDASLYSNSGQWEVHFENKVLSPPVTSSLPVGTSGRRRAQTGDHAQPG FT GRKPSQLAGDSRRRSQSQSSSRSRSRSRSPTKEPHSGRREAGIPGQQQGRPPGRRRGES FT PEQRIFGGPSPPTPGQVGGRHRSPSSKPTSRLARLINEAYDPPVLLLQGPANILKCFRR FT RATQTHGHRFLCMSTSWTWVCKTSPLKSGHRMLIAFTNCDQRKGFLSSVRLPKGVTFVK FT GSLTAYSICY" FT CDS 3290..3715 FT /codon_start=1 FT /transl_table=1 FT /gene="E4" FT /product="E4 protein" FT /db_xref="UniProtKB/TrEMBL:E1CGC1" FT /protein_id="BAJ12076.1" FT /translation="MHHCILTQDNGKCILKTKFFLPLLPVRFLLGPPGDDGPKPGTTPN FT PEEGNLPNLPETPGDGRSRSRHRDLGPDRDRPRRNRTPEEERRGYRGNNRGDPLEEDEG FT SPQNNVSLEDRLRQLLDKWEDDIGRLRQNLRLALLAL" FT CDS 3995..5575 FT /codon_start=1 FT /transl_table=1 FT /gene="L2" FT /product="L2 protein" FT /db_xref="GOA:E1CGC2" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:E1CGC2" FT /protein_id="BAJ12077.1" FT /translation="MVRAARTKRASEDDLYRGCRMGQDCPIDIKNKYEQNTLADRILKW FT VSSFLYFGTLGISSGRGTGGPTGYTPLGGGGRGGVTPGKGANVVKPTVIVDALSPTGVP FT IDPAVPDSSIVPLLESSGGSTTLDAAPGGEIEIIAEVHPPPTIGDPDIVIGQPDEPPIL FT EVVPETHPTSRVRSTTSKHDNPAFTAYVASAQLPGETSASDNVYILHGFNGDFIGAADP FT EGETVFEEIPLEEFGVPDSPPNTSTPTGSFRRVLNRFQRRLYNRRLVQQVKITDRNTFL FT RQPSRFVQWEFNNPAFNEESVSLLFQQDVDEVAAAPAEEFQDIVRLGRPIFSQSEGLVR FT VSRLGQRGTIKTRSGLRIGGHVHYYTDISPVRPVEDIEMTALGEVSGDSIIMQPLGEST FT FVDAGVSSDDLNANIIEYPDSILDDAMNEDFSNVRLEISTTARSRTSIVTIQEGIPPGS FT VKMFINESAATVNPHYTPSSPTENTDVPFIPLQPAFTPEIVIDFEENTATFYLHPSLLR FT KHKHKHWFF" FT CDS 5586..7103 FT /codon_start=1 FT /transl_table=1 FT /gene="L1" FT /product="L1 protein" FT /db_xref="GOA:E1CGC3" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:E1CGC3" FT /protein_id="BAJ12078.1" FT /translation="MSFWLPNSAKLYLPPPTPVTQFLDTDDFVTRTDIFYHTSSDRLLF FT VGHPYFDLKKGGKTVVPKVSGSQFRVFRMKFPDPNKFSFQSPNVYNPENQRLVWAVRGI FT EICRGQPLGVGVTGHPAFNKFKDAENINNNSAQNADDRVNVCVDPKQVQLFIVGCVPCD FT GEHWDAAKPCPTADTQPGDCPPIELKNTKIEDGEMCDTGWGNMNFAALQASKSGVPLDI FT VNQVVKYPDFLKMSNDPYGNSMFFFAKREQMYVRHLWTRAGITGDDIPPDEGFFLSSAG FT KTPLPSSVYVGSPSGSLVSSDQQIYNRPFWIQRAQGNNNGICWNNELFVTAVDSTRGTN FT FSISVHKTNPEPGPQETYAATNFKHYLRHVEEWDISLIIQLCIVDLKPEALAYINSMNS FT SIIENWNLGFIQPPNNIEDHYRFIDSLATRCPKKSDLQEKEDPYKDMRFWDVDLTERFS FT MNLDQHSLGRKFLFQIGRKASKRSAPKTVTFESSQGKRAPKRRRKNV" XX SQ Sequence 7251 BP; 2200 A; 1388 C; 1666 G; 1997 T; 0 other; ttaccttgca cctgggatgt gtgtaaatag gaaagaatgc aggcacacct tgagtgtgag 60 tctttgaagt ttattggcca caaaactaat tgctgcagcc aacttggcta taaaacagtt 120 tgtaaaacag cagactggcg tctggccatt gcaagtacag acacagtgca ccgtttgcgg 180 tcgaggatct cacgcttagt aagtgttgtt attaacaatc atctatgcaa caagataaac 240 ttgcacctca ttcggttgta ccgtttcggg tgcatatata aagccgcagg tcgggggctg 300 gtgcatgagg cattagcttc atccactatg tctttgtggt gtatctatct gttgttgctc 360 ttttggtgtg ggtttaattt ccttgctttg tgttttgcta ttatattgta tttgctaatg 420 atttcaacta ttactagatt agatggatgg gattgaatgg ttgtttatag ttgtgcttat 480 tattttgata tctgatttgc ttcttttata tgttagagaa attatgcagc ttgttttgct 540 attgtctata attgatgagg aattagaaga gtaaattctt ctgtttgcta ttcttgtacg 600 tgctttgtta gcaaaagaaa ttaggtgtgg acatttaaaa gctgaccttc cagtacttaa 660 ttgcagtagg cgcctacttg ggtgggagct atattagcaa tagttttgca agaaaatgaa 720 ggggccgaac gtgacattag agggcattgc tgcagaccta gagaatgcag ttagtccaat 780 taacttaaat tgcgaggagg agatagatac tgaggaagta gagcttccta atccatttga 840 aattacagca acctgttatg tttgtgaaaa aatactacga ttagctgttg taacatccaa 900 cgacgggatt catcagttgc aacaactgct gttcgagaac ctctctctgc tgtgctctgc 960 ctgctctaga gacgttttct gtaaccgcag acccgtgaaa aatggaccct aaaggtatta 1020 ctgtgcttga ctttatagat gaacaagctg aatgtagtca atctgatagt gaggaagggt 1080 gtgaagaaag tgtgtctgat ttgtctgacc taattgataa tgctgaatac gagcaaggga 1140 attctgcaga attgtttgca caacagcagg ctttcgattt ccataaggac ttatgcgcca 1200 caaaacgaaa gttaaatctc cctcagcgaa agcctttgca atgcattacc agtcaggata 1260 acatcagccc tcgtagagct gcgggaaaaa gacgtatcct agacgacagt ggttataatg 1320 aagatctttc tacagaggtg gcgcaggtag tggaaaatgg cggatcagaa ggttacggga 1380 gtctagtttc acagggtctg ggaacgcagg aagttagaag acgtagttct gcagaaaaag 1440 aaaatgggga ttgcattgcg gtacttcgag ctgggagcca aagagctgct tatctagcta 1500 tctttaagga aaagtttagc ataagcttta gctcattaac cagactgttt aaaaatgata 1560 agacatgctg cacaaactgg gtgggagcta tatttcgagc cagagaagaa ctgctggagg 1620 catctaagac tattttgcaa aaaagctgtg atcatttaat gttgttaact catacttgta 1680 aatatgggtt tatggcattg tacttgttgg attttaaaac ttcaaaaagt agagaaactg 1740 ttcgtaatat gtttggaaac ctgttgcaag ttgagaaaga tgatatgtta cttgaacctc 1800 cgaaattaaa aagtttacca gctgcaacct tttggtggaa aattaggcat agcaacaatt 1860 cttttacttg gggggaggtg cctaattgga tatcaaggca gacatcaatt acacatcaaa 1920 tagctgatga tgagcctttc aatttaagtg aaatggtgca gtgggcttac gatcatgatt 1980 taactgatga ggcgaaaata gcatattatt acgcaaggct tgcatctgag gaatcaaatg 2040 ctgcagcttt tctgcgttgc aatcagcaag ttaaacatgt cagggagtgt gctcaaatgg 2100 ttaaatatta caaaacagca gaaatgcatg aaatgtctat gggacagtgg attaagaagt 2160 gtatagataa tattgaagga gaaggtgatt ggagagagat ttgcaaattt ttaaagtatc 2220 agcaggtcaa ttttttgtct tttctttctg cattaaaaga cttgttgcac agcgtcccta 2280 aaaggaattg catggtaata catggacctc caaatactgg aaaatctatg tttgtaatga 2340 gttttatgag gtccctgaaa ggtagggtct tatcttttgt taatgcaaaa agccattttt 2400 ggctgcaacc actgaatagt gcaaaggttg ccatattgga tgatgccaca catgccactt 2460 ggaaatattt cgacacatac ctcagaaatg gcttagatgg cactcctgta tcattggata 2520 tgaagcatag agcccctatg caagtttgct ttcccccttt aatgattacc agtaatatag 2580 acataatgaa ggaccctgca tatatgtatt tgcacagtag acttgtgtgc tttgagttcc 2640 ctaacccttt tccattagat gaagctggca atcctgttgt attgataaat gaacttagtt 2700 ggaaatcttt ttttgcaagg ctttggagac agctagagct tacagaccct gacgaagagg 2760 aagatggcga gcctcgaagc ccgtttcgat gctgtgcaag agtccttgct acaaatctat 2820 gagagtgaat ctagcagtct agaactatgt tatcaatact ggcagttaat cagaaaagaa 2880 aatgcactgt attttactgc cagacagcaa ggtaaaacaa ggctaggcct gtatgcagtg 2940 cctgcaacta gggtctctga gcaaaaagct aaggatgcaa tcaagatgac tttatatttg 3000 gagagcctga agcagacaca gtttgccact gaaaggtgga cacttatgga cacaagctca 3060 gagaccttta tggcaccacc tgaaaacaca tttaaaaaga gaggacagca tgttactgtt 3120 gtgtatgatc atgatgcaaa taactctatg ttgtatacat tgtggactga actgtattat 3180 cttgatacct ctgacacatg gcacaaaacc accagttcgg tggattatga tggcattttt 3240 tatatagata tttatggcac aaaaatttat tatataaact ttcaggacga tgcatcattg 3300 tattctaact caggacaatg ggaagtgcat tttgaaaaca aagttctttc tccccctgtt 3360 accagttcgc ttcctgttgg gacctccggg agacgacggg cccaaaccgg ggaccacgcc 3420 caacccggag gaaggaaacc ttcccaactt gccggagact ccaggagacg gtcgcagtcg 3480 cagtcgtcat cgcgatctag gtccagatcg cgatcgccca cgaaggaacc gcactccgga 3540 agaagagagg cggggatacc ggggcaacaa caggggcgac cccctggaag aagacgaggg 3600 gagtccccag aacaacgtat ctttggagga ccgtctccgc caactcctgg acaagtggga 3660 ggacgacatc ggtcgccttc gtcaaaacct acgtctcgcc ttgctcgcct tataaacgaa 3720 gcttacgacc ctccagtgct actattgcaa ggtcctgcaa atatattgaa atgctttagg 3780 cgtagggcaa cgcagacaca cgggcatagg tttctgtgca tgagcacaag ctggacatgg 3840 gtttgcaaaa cttcaccttt aaaatcgggt cataggatgt taatagcttt tacgaactgt 3900 gatcaaagga agggctttct atccagtgta cggcttccta aaggggttac ttttgtgaaa 3960 gggtccttga cggcttatag catatgctat taaaatggtt cgtgcagcaa gaacaaagcg 4020 tgcgtctgaa gatgatttgt accggggttg cagaatgggc caggactgcc ctattgacat 4080 caaaaacaaa tatgagcaga acacattagc cgaccgaatc ctaaaatggg ttagctcatt 4140 tttatacttt ggaacattag ggataagcag tggtagaggg acaggaggcc ctacaggata 4200 cacacctcta ggtggcggtg ggcgaggcgg cgtcacgcct ggaaaagggg caaatgtagt 4260 aaagccaaca gttatagtgg atgcacttag tcctacagga gtgcccatag accctgctgt 4320 tcctgacagt agtattgtgc cattattaga aagtagtgga ggcagcacta cactggatgc 4380 tgcaccagga ggtgaaattg aaatcatagc tgaagtacat cctccaccaa ctataggaga 4440 ccctgacata gtaatagggc agcctgatga acccccaatt ttggaggtcg tgcctgaaac 4500 acatcctacc tctcgtgtaa gaagcaccac aagtaaacat gacaaccctg cattcacagc 4560 atatgtcgct agtgcacaat taccaggaga aacatctgcc tcagacaatg tatacatttt 4620 acacggcttt aatggggact ttatcggtgc agccgatcca gaaggagaaa cagtatttga 4680 agagattcct ttggaagaat ttggagttcc tgacagtccc cccaacacaa gcactccaac 4740 agggagtttt agaagagtgt taaataggtt ccaaaggagg ctatataata gaaggctagt 4800 tcagcaagtc aaaatcacag acagaaacac ttttttaaga cagccttcga ggtttgtgca 4860 atgggaattt aacaatcctg catttaatga ggagtctgtg tcattactct ttcagcaaga 4920 tgtagatgag gtggcagctg ccccagcaga ggagttccaa gacattgtta ggcttggaag 4980 gcctattttc tcacagagtg aaggtttagt cagagtaagc agactaggtc aacgaggcac 5040 cattaaaacc cgcagtggct tgcgaatagg tggccatgta cattattata cagatataag 5100 cccagtaagg cctgtagagg atattgaaat gacagctttg ggcgaggttt ctggcgacag 5160 cataattatg cagcccttag gtgaaagtac ctttgtggat gcaggagtaa gttcagatga 5220 tttaaatgca aacattatag aatatcctga cagcatatta gatgatgcaa tgaatgaaga 5280 ttttagtaat gttcgcttgg aaatcagtac tacagcaaga agtaggacca gcattgtcac 5340 tatacaggag gggattcccc caggatcagt aaaaatgttc attaatgaat ccgctgcaac 5400 agtaaaccct cattacaccc ccagctcgcc aaccgaaaac acagatgtgc cttttattcc 5460 attgcaacct gcctttactc ctgagattgt cattgacttt gaagaaaaca cagctacatt 5520 ttatctgcat cccagtttgt taagaaagca caaacataaa cactggtttt tttgatgttt 5580 tacagatgtc attctggcta ccaaactctg caaagctgta tttgccacca cctacaccag 5640 tcacacaatt tcttgacacg gatgattttg tcacacgcac tgacatcttt taccacacaa 5700 gcagtgaccg tctactgttt gtaggccatc catattttga cttgaaaaaa gggggcaaaa 5760 cagtggtgcc taaggtatct gggagtcaat tcagagtgtt ccggatgaaa tttccagatc 5820 caaacaagtt tagctttcaa tcacccaatg tgtacaaccc tgaaaatcaa agacttgtgt 5880 gggctgttag gggaatagaa atttgtagag gacagccact aggggttggt gtgacaggtc 5940 acccagcatt taataagttt aaggatgctg aaaatataaa taataattca gcccaaaatg 6000 cagatgacag ggtcaatgtc tgtgttgacc ctaaacaggt gcagctgttt atagtgggct 6060 gtgttccctg tgatggggaa cactgggatg cagctaaacc ctgtcccact gcagacactc 6120 aaccaggaga ctgtcctcca atagaattaa agaatacaaa aattgaggat ggtgaaatgt 6180 gtgatactgg ctggggtaat atgaattttg cagctttgca agcaagtaaa tcaggagttc 6240 cattagatat tgtaaaccag gtcgttaaat acccagattt ccttaagatg agcaacgacc 6300 cttatggtaa ttcaatgttt ttctttgcta aaagggaaca aatgtatgtt aggcatttgt 6360 ggaccagagc agggatcaca ggggatgaca ttcccccaga tgaaggcttc tttttatcta 6420 gtgcaggcaa aacacctcta cctagctcag tttatgttgg tagccctagt ggatctttag 6480 tttccagtga ccagcaaatt tataatcggc cgttttggat acagagagct caaggaaaca 6540 acaatggcat ttgctggaat aatgagcttt ttgttactgc tgtggacagt acacgaggca 6600 ctaattttag tatttctgtg cacaaaacaa atcctgagcc tggtccacag gaaacgtatg 6660 cagcaactaa ctttaaacat tatttgaggc atgttgaaga gtgggatatt tccttaatca 6720 ttcagctctg cattgtggac cttaaaccag aggcactagc ctatataaac agtatgaatt 6780 ctagcattat agaaaactgg aatttaggtt tcattcaacc ccctaacaat atagaagatc 6840 attacagatt tattgactct ttagctacca ggtgccccaa aaaatcagac ttgcaagaaa 6900 aagaagaccc ctacaaagac atgagatttt gggatgtaga tctgacagaa agattttcaa 6960 tgaatttaga ccaacactcg ttggggcgca aatttttgtt tcaaataggg agaaaagcta 7020 gcaaacggtc tgcaccgaaa acggtcacat ttgaaagcag tcaaggcaaa agagcgccaa 7080 agcgtaggcg gaaaaatgtc taggagccag gtttatgagc aattcattaa caaacagatt 7140 atagatatca ttgtttgatt ttatgtaagc catgaatctt gccaataaaa tttcaaatca 7200 catttcaatc ttatctcttt tatttttacc tttcgtgttt gtgcaaggta a 7251 //