ID AB331651; SV 1; circular; genomic DNA; STD; VRL; 7399 BP. XX AC AB331651; XX DT 22-DEC-2007 (Rel. 94, Created) DT 22-DEC-2007 (Rel. 94, Last updated, Version 1) XX DE Bovine papillomavirus-10 DNA, complete genome. XX KW . XX OS Bovine papillomavirus type 10 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Xipapillomavirus. XX RN [1] RP 1-7399 RA Hatama S.; RT ; RL Submitted (06-JUL-2007) to the INSDC. RL Contact:Shinichi Hatama National Institute of Animal Health, Hokkaido RL Research Station; 4 Hitsujigaoka, Toyohira, Sapporo, Hokkaido 062-0045, RL Japan XX RN [2] RX DOI; 10.1099/vir.0.83334-0. RX PUBMED; 18089739. RA Hatama S., Nobumoto K., Kanno T.; RT "Genomic and phylogenetic analysis of two novel bovine papillomaviruses, RT BPV-9 and BPV-10"; RL J. Gen. Virol. 89(Pt 1):158-163(2008). XX DR RFAM; RF00240; RNA-OUT. XX FH Key Location/Qualifiers FH FT source 1..7399 FT /organism="Bovine papillomavirus type 10" FT /mol_type="genomic DNA" FT /country="Japan" FT /note="type 10" FT /db_xref="taxon:453461" FT CDS 102..230 FT /codon_start=1 FT /transl_table=1 FT /gene="E5" FT /product="E5 protein" FT /db_xref="UniProtKB/TrEMBL:A9CR07" FT /protein_id="BAF95814.1" FT /translation="MNLRLLLFILLFWAGTSFLAMLLAILLFLMLMQRIDDLNGWD" FT CDS 429..725 FT /codon_start=1 FT /transl_table=1 FT /gene="E7" FT /product="E7 protein" FT /db_xref="GOA:A9CR09" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:A9CR09" FT /protein_id="BAF95815.1" FT /translation="MRGQAVTLPDITLELTDVVSPVSLDCEEELEIEEVESPDPYAVDA FT SCFNCHTNLRIVVVASPEGIRGLQLLLFGPLSLLCPACATRTCASRRPQRNGS" FT CDS 715..2670 FT /codon_start=1 FT /transl_table=1 FT /gene="E1" FT /product="E1 protein" FT /function="replication protein" FT /db_xref="GOA:A9CR10" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:A9CR10" FT /protein_id="BAF95816.1" FT /translation="MDPKGIESLIDDQAQCSESDSQEGCEESLSDISDLIDNAECVQGN FT SAELFAQQEAFEFEEHIRTTKRKLNLASRKPLQCLASQSNRSPRRAASKRRLLDDSGYD FT EDFSGKVVQVDENGNSEGYGSLGSQGKRKDITDYFKRTVKGTDKENVDCRSLLRSSSHR FT AAKLAVFKDIFNISLSSLTRPFKNDKTCCRHWVGAMFGAREELMEASKTILQKSCDYIM FT LLNHTCKFGFLLLYMLEFKNGKSRETVRRLFENLLQLEKEDMFLDPPKLRSLPAATFWW FT KAGYSRGAYTWGELPDWIARQTLLTHQKAEDEPFDLSRMVQWAYDHDHTDEAIIAYNYA FT RLALMNPLMILVKIIKLRWIHILSYDQMVSRKINNQTTRGISQRLASEDSNAAAFLRCN FT NQVKHVKECAQMCRYYKTAEMREMTMGKWIRKCLDSIEGVGDWKQLINFLKYQGINFLS FT FLACFKDLLHSVPKRNCMVIVGPPNTGKSMFVMSLMRAVKGKVLSFVNSRSHFWLQPLH FT GAKLAILDDATKCTWQYFDQYLRNGLDGTPVSLDVKHRAPMQICFPPLLITTNIDVMKE FT PQYSYLHSRLMAFEFPNPFPLDEAGNPALIINELSWKSFFERLWQQLELTDPEEEEDGE FT PRSPFRCCARTATGDL" FT CDS 2612..3868 FT /codon_start=1 FT /transl_table=1 FT /gene="E2" FT /product="E2 protein" FT /function="regulatory protein" FT /db_xref="GOA:A9CR12" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:A9CR12" FT /protein_id="BAF95817.1" FT /translation="MESLEARFDAVQEQLLGIYESNTNSLEVQIDYWQLIRKEQALYYL FT ARQQGKTRLGLYTVPLSRVSEKKAKDAIKMTLYLQSLQKSPFASQPWSLSDTSLETFLA FT APENTFKKRGAHVTVTYDKDAANAMVYTLWKEVYYLDAEDKWHRGTSEADYDGIFYTDA FT EGNKVYYVHFGEDAARYSSLGQWDVHFENQVLSPPVTSSLSNRPTARGDTGAETRKNTR FT SPATSNRRRSPHPGHSRRGRQGSPPSALPRSRSRSRSRSRSRSRSAGSDSSVVQQRRQQ FT STPRDRGGGGGGGRSWREFGDRPPPSPGQVGTGSRTPERRPASRLAHLIEEAYDPPVLL FT LQGGANTLKCFRRRANISHPHKFVCMSTSWTWVCKTSTRKSSHRMLVAFKNSDQRKTFL FT ATVRLPKGVSAVKGNLDAL" FT CDS 3033..3602 FT /codon_start=1 FT /transl_table=1 FT /gene="E4" FT /product="E4 protein" FT /db_xref="UniProtKB/TrEMBL:A9CR13" FT /protein_id="BAF95818.1" FT /translation="MLRTNGTGVQVRQIMMEYFTLTQRGIRCTMCTLERMLLVTLAWDN FT GMCILKTKFFLLLLPVLFLTGPPPEETPGPKPGKTPDLLQPPTEEGRRIPDTPGEGDRG FT RPRPRYPDLVRDRDRGLGRGRGPRDRTPASYNRGGNSLPREIGEEEEEEEEVGENLETG FT LRRLLDKWEQDLERLRDGLRHALLTL" FT CDS 3882..5465 FT /codon_start=1 FT /transl_table=1 FT /gene="L2" FT /product="L2 protein" FT /function="minor capsid protein" FT /db_xref="GOA:A9CR15" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:A9CR15" FT /protein_id="BAF95819.1" FT /translation="MVRAARRKRASEDDLYRGCLAGQDCPTDIKNKYEQNTLADRILKW FT VSSFLYFGTLGISSGRGSGGAGGYTRLGTVESGGGVRPGKGPNVARPTVIVDALGPAGA FT PIDPAAPDSAIVPLLESSGGSTTTDLIPGGGEIEIIAEVHPPPTIGDPDIVIGEPDEPP FT ILEVTPETHPASRVRYSTSKHDNPAFNAYVASSQLPGETSAADNVYIMHGFNGDYVGPA FT TTDTVFEEIELQDIGVPESPPSASTPDSAFRTVLNRFQRRLYNRRLVQQVKLTDRTFLT FT HPSRLVRWEFENPAFDESLSLLFEQDVNEVAAAPAEEFQDIVKLRRPFFSEKEGLVRVS FT RLGQRGTIRTRSGLQIGGHVHYFTDISPIRPVEDIEMQTFGEVSGDSIIMQPLGESTFI FT NADDTIDANLNEGLLQYSDSVLEDDYNEDFSHVRLEVTTGTSTSIITVPDGIPPGSVKM FT FINDANSTVTPVPPDANGNAFTPITPRFPLTPLSPAYTPTVIIDFEDGSATFFLHPSLL FT RKHKHKHWFF" FT CDS 5263..7005 FT /codon_start=1 FT /transl_table=1 FT /gene="L1" FT /product="L1 protein" FT /function="major capsid protein" FT /db_xref="GOA:A9CR17" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:A9CR17" FT /protein_id="BAF95820.1" FT /translation="MMQIVLLLLYHLMLMVMHLHPLHQDFHLLHFHLHIHPLSLLILRT FT AQPHFFCIQACFENTNINTGSFNFLQMSFWLPSAGRLYLPPPTPVTQYLDTDDFVTRTE FT IFYHTNTERLLTVGHPYFDIKDLEGKILVPKVSRSQFRVFRLKFPDPNKFSFPNANVYD FT PDKQRLVWAIRGVEICRGQPLGIGATGHPAFNRLADAENANKYPTQTTDDRMNMCVDPK FT QVQLFVVGCIPCDGEHWDVAQPCKKQNVGDCPPIELVNTLIEDGEMYDTGFGNMNFRAL FT QATKSGAPLDIVNQTVEYPDFLKMGSDPYGNQMFFYAKREQMYLRHLWSRGGELGDTIP FT PNGGPVSPYYMSGTGNGRTTFVPSVYFGTPSGSLVSSDQQIYNRPFWIQRAQGANNGIC FT WNNQCFITAVDTTRGTNFTISVHKSEEGPREQDTYTASDYKHYLRHVEEWEVSLIMQLC FT IVDLSPEAVAYLHGMNASILDNWNLGFIQPPNNLEDQYRYLSSVATRCAKPDDQPEKED FT PYSKMHFWDVDLSERFSSNLEQHSLGRKFLFQIGKRATKRSAPKTVGFEKNTSKAAKRR FT RKNT" XX SQ Sequence 7399 BP; 2203 A; 1487 C; 1734 G; 1975 T; 0 other; gtgttaatac ttgtaccaaa ttcggttctc accgtttgag gtacatataa aaggctgctc 60 acggggtcta agcggatgga gctttgcagt tcccttcaac catgaacttg cgtctcttac 120 tgtttatttt gctcttttgg gcagggacaa gctttcttgc tatgctttta gcaattttat 180 tgtttctaat gttaatgcaa agaattgatg acttgaatgg atgggactaa ttgtaatttg 240 ttaattgttt tattgatatt ttgtgctgac aattgtgggg acagtctttg cttttttctg 300 cctcttgctt atggtgaatt ttgtgcacgt agcattaggt gtggacagct ataaattagc 360 tgacctttgc tcacttaatt ggtgtaaggc gccactgcag ttaaagggct ggtggtttag 420 caggaaaaat gaggggacag gctgtgacac tacctgatat cactctggaa ttgacggacg 480 tagttagtcc agttagcttg gattgtgaag aggagctaga aattgaggag gttgaaagtc 540 ctgaccctta tgcagtagat gcttcctgct ttaattgtca taccaatctc cgaatagtag 600 tcgtcgcttc acctgaagga atccggggtc tccagctcct gctttttggt cctttgtcct 660 tgttgtgtcc agcctgtgcc acccgaacgt gcgctagccg cagaccacag cgaaatggat 720 cctaaaggta ttgaaagctt aatagacgac caagcgcaat gtagtgagtc tgatagccag 780 gaagggtgtg aagagagctt gtctgatata tctgacctaa ttgataatgc tgaatgcgtg 840 caagggaatt ctgcggaatt gtttgcacaa caagaggctt tcgagttcga ggagcacata 900 cgcactacaa agcgaaagtt aaatcttgca tcccgtaagc ctttacaatg ccttgccagt 960 cagagtaaca ggagccctcg tagagctgcg tccaaaagga gattgctgga cgacagcggt 1020 tatgacgaag atttttctgg aaaggtggtt caggtagatg aaaatggcaa ctctgagggt 1080 tacgggagtt taggctctca ggggaaaaga aaagacataa ctgattactt taagcgcacc 1140 gttaaaggta cagacaagga aaatgtggac tgtaggagct tgctacgatc aagcagccac 1200 agagcagcta agctggctgt attcaaggac atttttaata taagcttaag ctctttgaca 1260 agacctttta aaaatgataa gacatgctgc agacactggg tgggggctat gtttggggca 1320 agagaggagc ttatggaagc ctctaaaaca attctgcaaa aatcctgtga ttatattatg 1380 ctgttaaacc atacttgtaa atttggtttt ttgctattgt acatgttaga atttaaaaat 1440 ggtaaaagta gagagactgt aagaaggctt tttgaaaatt tgctgcagct agaaaaagag 1500 gatatgtttc ttgatcctcc taaacttaga agcttaccag ctgcaacatt ttggtggaaa 1560 gctgggtaca gtcggggagc gtatacttgg ggggaactgc cagattggat agctcgtcaa 1620 acattgctaa cacatcaaaa agctgaggat gagccttttg atttgtctag aatggtgcag 1680 tgggcttatg atcatgatca tacagatgaa gcaatcattg cctataatta tgctcgctta 1740 gctctgatga atcccctaat gattttggta aaaatcatta agttaaggtg gatacacatc 1800 ttgtcatatg atcaaatggt ttcgcgaaaa atcaataatc agacaacaag ggggatctct 1860 cagcgcttag cttctgaaga tagtaatgct gcagcgtttt taaggtgtaa taatcaagtg 1920 aaacatgtta aagagtgtgc acaaatgtgt aggtattata agactgcaga aatgagagag 1980 atgacaatgg gaaaatggat taggaaatgt ttagatagca ttgaaggtgt tggggattgg 2040 aaacaattga ttaacttctt gaagtaccaa ggcataaact ttttgtcatt tttagcatgc 2100 tttaaagatt tgttgcacag tgttcctaaa agaaattgca tggtgatagt gggaccacca 2160 aacactggaa aatctatgtt tgttatgagc ttaatgaggg ctgttaaagg gaaagtgtta 2220 tcatttgtga attctagaag tcatttttgg ctgcagcctt tgcatggtgc aaaattggct 2280 attttagatg atgctacaaa atgcacatgg caatattttg accagtattt aagaaatgga 2340 ctagacggca ctccagtttc actggatgtg aagcatagag cacctatgca aatatgcttc 2400 ccaccattat tgataacaac taatatagat gtcatgaaag agcctcaata ttcatacttg 2460 catagcagat tgatggcttt tgaattccca aaccctttcc ctttagatga agcgggaaat 2520 cctgctttga ttatcaatga acttagttgg aaatcttttt ttgaaaggct ttggcaacag 2580 ctagaactga cagatccaga ggaagaagaa gatggagagc ctcgaagccc gtttcgatgc 2640 tgtgcaagaa cagctactgg ggatttatga gtctaacaca aactctttag aagtgcaaat 2700 tgactattgg cagctcataa gaaaagagca ggccttgtat tatcttgcaa gacaacaagg 2760 taaaacaagg ctaggactgt atacagtgcc tctttcgaga gtgtcagaaa aaaaggctaa 2820 agatgcaatc aagatgactt tgtatttgca aagcctgcag aaatcccctt ttgcaagcca 2880 gccttggtct ttgtcagaca caagcttaga gacttttttg gctgctccag aaaacacttt 2940 caaaaagaga ggagcacatg tgactgttac atatgataaa gatgctgcta atgcaatggt 3000 atacactttg tggaaagaag tgtattactt agatgctgag gacaaatggc acaggggtac 3060 aagtgaggca gattatgatg gaatatttta cactgacgca gaggggaata aggtgtacta 3120 tgtgcacttt ggagaggatg ctgctcgtta ctctagcttg ggacaatggg atgtgcattt 3180 tgaaaaccaa gttctttctc ctcctgttac cagttctctt tctaaccggc ccaccgccag 3240 aggagacacc ggggccgaaa ccaggaaaaa caccagatct cctgcaacct ccaacagaag 3300 aaggtcgccg catcccggac actccaggag agggcgacag gggtcgcccc cgtccgcgct 3360 acccagatct cgttcgcgat cgagatcgag gtctcggtcg aggtcgaggt ccgcgggatc 3420 ggactccagc gtcgtacaac agaggcggca acagtctacc ccgagagatc ggggaggagg 3480 aggaggagga ggaagaagtt ggagagaatt tggagacagg cctccgccgt ctcctggaca 3540 agtgggaaca ggatctcgaa cgcctgagag acggcctgcg tcacgccttg ctcaccttat 3600 agaagaagcc tacgaccccc cggtgttact tttgcaaggt ggtgcaaaca ctttaaaatg 3660 ttttcggaga agggccaata tcagtcaccc tcataaattt gtgtgcatga gcactagctg 3720 gacttgggtg tgcaagacct ccacccgcaa atctagccat agaatgctag tggcttttaa 3780 gaactctgac caaagaaaga ctttcttagc aactgtgaga ctccccaaag gtgtatctgc 3840 ggtgaaaggg aatttagacg ctctgtaaaa cttctattaa aatggttcgt gcagcaagac 3900 gaaaacgtgc ctctgaggat gatttataca ggggctgtct tgcagggcaa gattgtccca 3960 ctgacatcaa aaacaagtat gaacaaaaca cattagctga cagaatttta aagtgggtca 4020 gctctttttt gtactttgga accttaggaa tcagcagtgg cagaggttca ggaggagccg 4080 ggggttatac acgcctaggc actgttgaaa gtggaggagg agtaaggcct gggaagggtc 4140 ctaatgttgc aagaccaact gtaatagtag atgcacttgg tcctgcagga gcacctattg 4200 atcctgcagc tccagactca gcaatagtgc cccttttgga gagcagtggg ggaagcacaa 4260 ctacagacct aataccaggg ggtggtgaga tagaaatcat tgcagaagtg caccctcctc 4320 ctacaatagg ggaccctgat attgtcattg gagaacctga tgagccccca attttagaag 4380 tcactccaga aactcaccca gcatcaagag taaggtatag cactagtaaa catgacaacc 4440 ctgcatttaa tgcatatgtt gcaagctctc agttgccagg agaaacttct gcagctgaca 4500 atgtgtacat aatgcatggc tttaatgggg actatgtagg gcctgcaacc actgacactg 4560 tctttgaaga gattgaattg caagacatag gggtaccaga aagtcctcct tcagctagca 4620 cacctgacag tgcctttaga actgtcttaa acaggtttca aagaaggctg tacaatcgca 4680 ggcttgtgca gcaagttaag ctcactgaca gaacattttt aacacatcca tcccgattgg 4740 tcagatggga atttgaaaat cccgcctttg atgagtctct aagtctattg tttgagcaag 4800 atgtgaatga ggttgcagca gctccagcag aagaatttca ggacatagta aaattacgca 4860 ggccattttt ttcagaaaaa gaaggcttag tcagagtaag taggctggga caaagaggca 4920 ctattcgcac tcgaagtggc ctgcaaattg gtggacatgt gcattatttt acagacataa 4980 gcccaattag gccagtggag gatatagaaa tgcaaacctt cggggaggtt tcaggagaca 5040 gtataattat gcagccatta ggtgagagta ctttcatcaa tgctgacgac actatagacg 5100 ccaaccttaa tgaagggttg cttcaatact ctgacagtgt cctcgaagat gattacaatg 5160 aggatttcag tcacgtacgc cttgaggtga ccactggtac gtcaactagc ataatcacag 5220 tgcctgacgg tatcccccct ggctcagtca aaatgtttat taatgatgca aatagtactg 5280 ttactcctgt accacctgat gctaatggta atgcatttac acccattaca ccaagatttc 5340 cacttactcc actttcacct gcatatacac ccactgtcat tattgatttt gaggacggct 5400 cagccacatt ttttttgcat ccaagcttgc ttcgaaaaca caaacataaa cactggttct 5460 tttaattttt tacagatgtc tttttggctt cccagtgcag gaagactata cttgccacca 5520 cctacacctg tgacacagta cttagacacg gatgactttg ttacacgaac tgaaatattt 5580 tatcacacga acactgaacg ccttctcaca gtgggtcacc cctattttga catcaaggac 5640 ttggaaggaa aaatattggt gcccaaagta tcaaggagcc aatttagagt gttcagactc 5700 aaatttccag accccaacaa gttcagcttt ccaaatgcca atgtatatga ccctgacaag 5760 caacggcttg tttgggccat tcggggagtg gagatatgca gagggcagcc acttggtata 5820 ggagccacag gtcatcctgc attcaatagg cttgcagatg ctgaaaatgc aaacaaatac 5880 cccacacaaa ccacagatga caggatgaat atgtgtgtag atcctaagca agtacagctt 5940 tttgttgtag gctgcattcc ttgtgatggg gaacactggg atgttgctca gccctgcaaa 6000 aagcaaaatg tgggcgattg cccccctatt gagcttgtaa acactcttat tgaagatggt 6060 gagatgtatg acacagggtt tggaaacatg aattttagag ccctgcaagc tacaaaatct 6120 ggagcccctc ttgatattgt aaaccagaca gttgaatacc cagacttctt aaaaatgggt 6180 agtgatccat atggaaacca aatgttcttc tatgcaaaaa gagagcaaat gtatttaagg 6240 catttgtggt ctcgaggtgg agagttagga gatacaatcc ccccaaatgg tggaccagtc 6300 agcccctact atatgtctgg tactggaaat ggcagaacaa catttgttcc ctcagtgtac 6360 tttggcactc caagtggttc tttagtttcc agtgaccagc agatttacaa taggccattc 6420 tggatacaaa gggcacaagg tgctaataat ggtatttgct ggaataacca atgcttcata 6480 acagcagtag atactactag aggcacaaac ttcactattt cagtgcacaa aagtgaagaa 6540 ggccctcgag agcaagacac ttacactgcc tcagattata aacattattt aaggcatgta 6600 gaagagtggg aggtctcact aatcatgcaa ctctgcattg tagacctaag tccagaagca 6660 gttgcatatc tgcacggaat gaatgctagc attcttgaca attggaattt aggtttcata 6720 cagcccccaa acaatttaga agaccaatac agatacctca gctcggtagc aacccgctgt 6780 gcaaagccag atgatcaacc agagaaagaa gacccttata gcaaaatgca tttttgggat 6840 gtagacttaa gtgaaaggtt ttcttctaat cttgaacaac attctctagg gagaaagttc 6900 ctgtttcaaa taggcaaaag agctaccaaa cggtctgcac cgaaaacggt tggctttgaa 6960 aaaaacacct ccaaggcggc aaagcgtagg cgtaaaaata cctaaggcca atttcctatg 7020 agcaatacct gaaatcttta atgtagattg cattatgttt ctttttatgt aagagatgaa 7080 taaaaaagtt gaaatgtgga accagcttat ctcttgtttt tccttcccca ctcccttttt 7140 tctgtgcacc ccactcccta tttccgtgca cctggtgtgc acctggcagc actctcaaga 7200 ggaaaatatg tggcacacct attagtaagc tttaaacttt attggataat aaaaagtctt 7260 taagaggcgt ccaagttggc atataactca cagctcaggc gcgcctggca gtgcgccctt 7320 gcaagcccag acagttgcac cgaaaacggt atatttggct gcaccaagta agtagttgta 7380 gttaacaaca atatatgct 7399 //