ID AB331650; SV 1; circular; genomic DNA; STD; VRL; 7303 BP. XX AC AB331650; XX DT 22-DEC-2007 (Rel. 94, Created) DT 22-DEC-2007 (Rel. 94, Last updated, Version 1) XX DE Bovine papillomavirus-9 DNA, complete genome. XX KW . XX OS Bovine papillomavirus type 9 OC Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Xipapillomavirus. XX RN [1] RP 1-7303 RA Hatama S.; RT ; RL Submitted (06-JUL-2007) to the INSDC. RL Contact:Shinichi Hatama National Institute of Animal Health, Hokkaido RL Research Station; 4 Hitsujigaoka, Toyohira, Sapporo, Hokkaido 062-0045, RL Japan XX RN [2] RX DOI; 10.1099/vir.0.83334-0. RX PUBMED; 18089739. RA Hatama S., Nobumoto K., Kanno T.; RT "Genomic and phylogenetic analysis of two novel bovine papillomaviruses, RT BPV-9 and BPV-10"; RL J. Gen. Virol. 89(Pt 1):158-163(2008). XX FH Key Location/Qualifiers FH FT source 1..7303 FT /organism="Bovine papillomavirus type 9" FT /mol_type="genomic DNA" FT /country="Japan" FT /note="type 9" FT /db_xref="taxon:453460" FT CDS 324..452 FT /codon_start=1 FT /transl_table=1 FT /gene="E5" FT /product="E5 protein" FT /db_xref="UniProtKB/TrEMBL:A9CQZ7" FT /protein_id="BAF95808.1" FT /translation="MSMRLIYFLLLLWCGFNFLSLLFAVVIYLLLLSAMDNLNGWD" FT CDS 787..1083 FT /codon_start=1 FT /transl_table=1 FT /gene="E7" FT /product="E7 protein" FT /db_xref="GOA:A9CQZ9" FT /db_xref="InterPro:IPR000148" FT /db_xref="UniProtKB/TrEMBL:A9CQZ9" FT /protein_id="BAF95809.1" FT /translation="MKGHYVTLKDIALEFEDAVSPVNLDCEEEEIETEVVECPNPYSVT FT ATCYVCEKTLRIAVVTSADGIRQLQLLLLDSLSLLCAACCSDAIRAGRPRNGP" FT CDS 1073..2893 FT /codon_start=1 FT /transl_table=1 FT /gene="E1" FT /product="E1 protein" FT /function="replication protein" FT /db_xref="GOA:A9CR01" FT /db_xref="InterPro:IPR001177" FT /db_xref="InterPro:IPR014000" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR016393" FT /db_xref="UniProtKB/TrEMBL:A9CR01" FT /protein_id="BAF95810.1" FT /translation="MDPKGIDVLEFIEEQAECSESDSQEGCEEGESLSDLSDLIDNADC FT EQGNSRELFAQQEAFDFHKDIRAAKRKLKRSLRKPLQCITSQTNNSPRRAASKRRLLDD FT SGYNEDIPGEVAPQVDENGASEGYGSLASQNVSGQNINACNKENGDCRAFLRAGSQKAA FT YLAIFKEKFTISFTALTRIFKNDKTCCNSWVGVVFGARDERMEASKTILQNCCDFVLLL FT THTCKYGFMGLYLLSFKNSKSRETVRHLFKQLLQMEKDEMFLEPPKLRSLPAATFWWKM FT QHSQGCYVWGQLPEWIARQTMISHQIADDEPFNLSQMVQWAYDHDYVDEAKIAYYYARL FT ATEDANAAAFLRCNNQVRHVKECAQMTRYYKTAEMREMSIGQWIRKSISAIDGTGDWKT FT IVNFLKYQHVNFLSFLSAFKDLLHGVPKRNCMVLFGPPNTGKSMFIMSLMKTLKGRVLS FT FVNSKSHFWLQPLDSAKIAVLDDATRATWSYFDTYLRNGLDGTPVSLDMKHRAPLQICF FT PPLLITTNLDIMKDPTYMYLHSRLVAFEFANPFPLDEAGNPLFLINELSWKSFFERLWT FT QLELTGPEDDEDGQPRSPFRVCARTAVTDI" FT CDS 2835..4055 FT /codon_start=1 FT /transl_table=1 FT /gene="E2" FT /product="E2 protein" FT /function="regulatory protein" FT /db_xref="GOA:A9CR02" FT /db_xref="InterPro:IPR000427" FT /db_xref="InterPro:IPR001866" FT /db_xref="InterPro:IPR012677" FT /db_xref="UniProtKB/TrEMBL:A9CR02" FT /protein_id="BAF95811.1" FT /translation="MDSLEARFESVQEQLLQIYETDSQTLEVAITYWSLIRREHALYYR FT ARQEGKTRLGLYPVPPSRVSEKKAKDAIKIYLHLQSLQQSEFANLKWSLVDTSLENFLA FT APENTFKKKGQLVTVVYDSDANNSMVYTAWREIYYVDEKDTWRRTHSQVDHDGIFYEDA FT QGNKVYYVNFHDDAALYSNLGRWEVHFENHVLSPPVTSSVSGGPAKHRRPQAGDHSPGH FT TSAVSAAAGQYTGDSGQRHTRSRSRSRSRSRSRTPTRPTSGGPPRKRGRGGGTHTGGSP FT TEVRRHPGGTPPPTAEQVGVRHRTPERKTASRLTHLIEEAFDPPILLLQGAANTLKCFR FT RRATHSHPHRFLCMSTSWTWASKTSTLKSGHRMLVAFSNFDQRTNFLANVHLPKGVTAV FT TGSLDGL" FT CDS 4067..5635 FT /codon_start=1 FT /transl_table=1 FT /gene="L2" FT /product="L2 protein" FT /function="minor capsid protein" FT /db_xref="GOA:A9CR04" FT /db_xref="InterPro:IPR000784" FT /db_xref="UniProtKB/TrEMBL:A9CR04" FT /protein_id="BAF95812.1" FT /translation="MVRAARRKRASEDDLYRGCQMGQDCPIDIKNKYEHNTLADRILKW FT VSSFLYFGTLGISSGKGTGGTTGYTPLGTGSGGVRPGKGANVVRPTVIVDALNPPGVPI FT DPAVPDSSVVPLLESSGGSTTLDTPMGGEVEIIAEVHPPPTVGPPDIIIDHPDDPPILD FT VTSETHPTSSVKSTTSKHDNPAFTAYVASAQLPGETSAADHVYVLHGFNGDFVGPADSE FT GNAIFEEIPLDEFGVPDSPPSSSTPDSRFRRVLNRFQRRLYNRRLVQQVKITDRNTFLR FT QPSQFVQWEFDNPVYEDESLSLIFQQDVDDVSAAPVAEFQDVVKLSRPIFTEAQGLVRV FT SRLGQRGTIRTRSGLQIGGHVHYYTDISPIRPAEDIEMTSFGEVSGDSIIMQPLAESTL FT IGAGVRENMDEGLIEYSDSVLDDDLNEDFSNVRLEITTSARNRTSILTVQDGIPPGSVK FT MFINDNAATVHPYYPAHEEGTDTRDIPLSPTLPPAIIIDFDEDTATFFLHPSLLKKHKH FT KHWFF" FT CDS 5562..7157 FT /codon_start=1 FT /transl_table=1 FT /gene="L1" FT /product="L1 protein" FT /function="major capsid protein" FT /db_xref="GOA:A9CR05" FT /db_xref="InterPro:IPR002210" FT /db_xref="InterPro:IPR011222" FT /db_xref="UniProtKB/TrEMBL:A9CR05" FT /protein_id="BAF95813.1" FT /translation="MRTQQLSFYIPACSKNTNINTGSFNVLQMSFWLPSSGKLYLPPPT FT PVTQFLDTDDFVTRTDIYYHTNTERLLTVGHPYFDLKQGNEVVVPKVSGSQFRVFRLKF FT PDPNKFSFQNPDVYNPDSQRLVWALRGIEICRGQPLGIGVTGHPAFNKFKDAENSNTNP FT AQGKDDRVNVCLDPKQVQLFIVGCTPCDGEHWDVAKACTDLKPGDCPPLELVNSTIQDG FT EMCDTGFGNMNFSTLQKSKSGAPLDIINQVVKYPDFLKMGSDPYGNSMFFYAKREQMYV FT RHLWSRAGTLGDDIPANGDTNPYFLSGDSALPTSVYFGSPSGSLVSSDQQIYNRPFWIQ FT RAQGSNNGMCWNNELFVTAVDSTRGTNFTISVHTSQPEPLPQDRYAATKFKHYLRHVEE FT WELSLILQLCVVDLKPEALAHLHSMNPSIIDNWNLGFIQPPNNIEDQYRFINSLATRCP FT KAADVQEKIDPYKGMRFWDVDLTERFSLNLEQHSLGRKFLFQIGKRAPKRSAPKSVAFS FT SSSKKAPKRRRKNV" XX SQ Sequence 7303 BP; 2082 A; 1528 C; 1726 G; 1967 T; 0 other; aaagtctgca cctggtgctg tgtaaagaca caggtatgcg ggcacaccta acgggtgcgc 60 ctttgaagtt tttattggcc ataaaactaa ttgttctggc caagttggct ataaacagtt 120 cctgaaaggc gcgcacgggc agaaatccac tgcaagctga gacaggacgt accgtttgcg 180 gtcggaaccg tctcatcaca gtaagttgtt ataattaaca atcacgtaca tgtagttact 240 gactgcacct aattcggttg caccgttccc ggtacgtata taaaggcagc agtttggggt 300 ctggtgagaa gcatagcttc ataatgtcca tgcgtctaat ctatttctta ttgctgttgt 360 ggtgtgggtt caactttttg tctttgttgt ttgcagttgt gatttatttg cttttattat 420 ctgctatgga taatcttaat ggatgggatt gagggaatcg tactgatatt attgattttg 480 gtgttttggt tcgggtttac ttttgttgcc tctgtcctca ttattgtgat atatgcctgt 540 ctaatatttg caatagaaag tatgaatgga tggaactgaa gctgtgctga tagctctatt 600 gatctgtgta atttgtgata ttatactatt gtatgtagct gaaattctgc agcatttgct 660 tatattgtct ttgctagatg aggagtttta gctaggtgtg ggcataaaag ctgaccgtac 720 cagtacttaa ttgcaggtgg cgcctgagag gagtcacata aaggtcttac acgttctgca 780 aggaaaatga agggccacta cgtgacttta aaggatattg ctttagaatt tgaggatgca 840 gttagcccgg ttaatttaga ttgtgaggag gaggagatag agacagaagt tgtggagtgt 900 cctaaccctt actccgtcac agcaacttgt tatgtttgtg aaaagacatt acgaatagct 960 gttgtcacat ctgcggacgg catccgtcaa ctgcaacttc tcctgttgga ttcactttcc 1020 ctactgtgtg cagcttgttg tagcgacgca atccgcgctg gcagaccccg aaatggaccc 1080 taaaggtatt gacgtccttg agtttattga ggaacaagca gaatgtagtg aatctgatag 1140 ccaggagggg tgtgaagaag gagaaagctt gtcagatttg tctgacttaa ttgataatgc 1200 tgattgcgag caagggaatt ccagagaatt gtttgcacaa caggaggctt tcgatttcca 1260 taaggacata cgcgctgcaa aacgaaagtt aaaacggtca ctccgaaagc ctttacaatg 1320 cataacgagt cagactaaca acagccctcg tagagctgcg tccaaaaggc gattgctaga 1380 cgacagtggt tataatgaag atattcctgg agaggtggct cctcaggtag atgaaaatgg 1440 cgcatcagag ggatacggga gtctagcttc gcaaaatgtg tcggggcaga acataaatgc 1500 ttgtaacaag gagaatgggg attgcagagc gtttttgcga gcaggaagcc aaaaagccgc 1560 ctatttggca atatttaaag agaagtttac gatcagtttt actgcgttaa ctagaatttt 1620 taaaaatgat aagacgtgct gtaatagttg ggtgggggtg gtgtttggtg ctagggatga 1680 acgtatggag gcttcaaaaa ccattttgca aaactgttgt gactttgtgc ttctgcttac 1740 acatacctgt aaatatgggt ttatgggatt gtacttgttg tcttttaaaa atagtaaaag 1800 tcgggagact gtcagacatt tatttaaaca gcttttgcag atggaaaaag atgaaatgtt 1860 tttggaacca ccaaaattac gaagtctgcc tgctgcaacg ttttggtgga agatgcagca 1920 cagtcagggc tgctatgtat gggggcaatt gcctgaatgg atagcaaggc aaacaatgat 1980 atctcatcaa atagcagacg atgagccttt taatcttagt caaatggtgc aatgggctta 2040 tgatcacgat tatgttgatg aagccaaaat agcttactac tatgctcgtc tagcaactga 2100 agatgccaat gctgcagctt ttctgcgctg taataatcaa gtaaggcatg ttaaggaatg 2160 tgcacagatg acaaggtact ataaaactgc tgaaatgagg gaaatgtcta tagggcagtg 2220 gattagaaaa agtatttcag caatagatgg tacaggcgat tggaagacta ttgtcaactt 2280 tttaaaatat caacatgtta atttcctgtc atttcttagt gcatttaaag acctgcttca 2340 tggtgttcca aaaagaaact gcatggtgct ttttggacct cctaacactg gcaaatctat 2400 gtttattatg agcttaatga agactttgaa gggcagagta ttgtcttttg taaattctaa 2460 aagtcatttt tggctgcaac ctttggactc tgcaaaaatt gctgttttag acgatgctac 2520 acgagccaca tggtcgtact ttgatacata cctcaggaat ggtctggatg ggacccctgt 2580 ttcactagat atgaaacaca gggctccctt gcaaatctgc tttcccccct tgctaataac 2640 tactaatctc gatattatga aggaccccac atatatgtat ttgcatagca gattagtggc 2700 ctttgagttt gctaacccct tcccattaga tgaggctggc aaccctttat ttttaatcaa 2760 tgaactcagc tggaaatctt tttttgaaag gctttggact cagctagagc taactggccc 2820 tgaggacgac gaagatggac agcctagaag cccgtttcga gtctgtgcaa gaacagctgt 2880 tacagatata tgaaacagat tcacagacat tagaagtggc aatcacgtat tggtcactta 2940 taaggcgaga gcatgccttg tattatcgag ccaggcaaga aggtaaaaca aggctgggac 3000 tgtatccagt tcccccctca agggtgtcag aaaaaaaggc taaggatgcg atcaagatat 3060 atttgcattt gcagagcctg cagcagtctg agtttgcaaa tttaaagtgg tcacttgtgg 3120 acactagctt agagaacttt ctagctgccc ctgaaaacac attcaaaaaa aaagggcagc 3180 ttgtaactgt ggtgtatgac tctgatgcta ataattccat ggtgtataca gcatggcgag 3240 aaatttacta tgttgacgaa aaggacacat ggagacgaac gcacagtcag gtggaccatg 3300 atggaatatt ttatgaggac gcacagggga acaaagtgta ctatgtgaac tttcatgatg 3360 atgcagcact gtattctaat ctagggcgat gggaagtgca ttttgaaaac cacgttcttt 3420 ctccccctgt caccagctcg gtttccggtg ggcctgccaa gcaccgacga ccccaggccg 3480 gggatcactc cccgggacac acctctgccg tttctgccgc agccgggcaa tataccggag 3540 actccgggca acggcacacg cggtcgaggt cgcggtctag gtccaggtcc agatccagga 3600 cgcctacgag gccgacatcc ggaggacccc ctcgaaaacg agggagagga ggaggaacgc 3660 acaccggagg atcacccacc gaggtacggc gacaccctgg aggaacgcct ccgccaactg 3720 ctgaacaagt gggagtccga catcgaacgc ctgagagaaa aactgcgtct cgccttactc 3780 accttataga agaggccttc gaccctccca tcctgctttt gcaaggtgct gcaaataccc 3840 ttaagtgctt tagacgacgt gccacacatt cccatcctca tagattcctg tgcatgagca 3900 caagctggac atgggctagc aaaacgtcta ccttaaagtc aggccacaga atgctagtgg 3960 ctttttcgaa ctttgaccag agaacgaact ttctagccaa tgtgcacttg cccaagggtg 4020 taaccgctgt tacggggtct ttagacgggt tatagcattt attaaaatgg ttcgtgcagc 4080 aagacggaaa cgtgcgtctg aggatgattt gtacaggggc tgccagatgg gtcaggactg 4140 ccctatcgac atcaaaaaca aatatgaaca caacacactt gctgacagga tccttaaatg 4200 ggtcagctca tttctgtact ttggcaccct gggcataagc agtggcaaag gcacaggggg 4260 cacaacaggc tacactccat taggaacagg gagtggggga gtacgacctg gtaaaggggc 4320 gaatgtagtt cgcccaactg tcattgttga tgcgctgaat cctcccggcg tccccattga 4380 ccctgctgtc ccagacagca gtgtagtacc tctgctggaa agcagtggag gaagcaccac 4440 acttgacaca ccaatgggtg gggaggtgga aatcattgct gaagttcacc ctcctcctac 4500 tgtgggccct cctgacatta taattgacca tccagatgac cctcctatat tagatgtaac 4560 ctctgaaaca catcctacgt cttctgtaaa aagcaccact agcaagcatg acaacccagc 4620 attcacagca tatgttgcta gtgcacaatt gcctggagaa acttctgcag cagatcatgt 4680 ctatgttttg catggtttca atggtgattt tgtaggccct gcagattcag agggcaatgc 4740 aatctttgag gagataccat tagacgagtt tggtgtccct gatagtcccc caagcagcag 4800 caccccagac agcagattta ggagggtcct aaacagattc caaagaaggc tgtataacag 4860 gaggcttgtg cagcaagtca agattactga cagaaataca tttttaagac agccttccca 4920 attcgtgcaa tgggaatttg ataaccctgt ttatgaagat gagtcgttgt cattaatctt 4980 tcaacaagat gtggacgacg tgtcagctgc acctgttgca gaatttcaag acgttgtcaa 5040 attaagcagg cctattttca cagaggcaca aggcttagtc agagtcagta gactgggaca 5100 gcgtggcacc attcgaaccc gtagtggctt gcagataggt ggacacgttc attactacac 5160 tgatataagt ccaattagac ctgcagaaga catagaaatg acatcctttg gtgaagtctc 5220 aggggacagt attattatgc agccactagc agaaagtacc ttaataggtg caggcgttag 5280 ggaaaacatg gatgaagggt taatagaata ttctgacagt gttttagacg atgatcttaa 5340 tgaggatttc agcaatgtca ggcttgaaat caccacgtct gcacgcaata gaaccagtat 5400 tctcactgtt caagatggaa taccccctgg gtcagtcaaa atgtttatca atgataatgc 5460 agctacagtt catccctatt acccagcaca tgaggagggt acagacacta gggacattcc 5520 attgtctcct acactacctc cagcaataat tattgatttt gatgaggaca cagcaacttt 5580 ctttttacat cccagcttgc tcaaaaaaca caaacataaa cactggttct tttaatgttt 5640 tgcagatgtc tttctggcta cctagctcgg gaaagctgta cttaccacca cctacaccag 5700 tcacacagtt tctagacacg gatgattttg ttacacgaac agacatctat tatcacacga 5760 acactgaaag attattaact gttggacacc cctactttga ccttaaacaa ggcaacgagg 5820 ttgtggtgcc taaagtgtct ggaagccagt ttagggtctt taggctaaag tttccagacc 5880 ctaacaaatt tagcttccag aatccagatg tatacaatcc tgacagtcaa agactagttt 5940 gggccctacg gggcattgaa atttgtaggg gccagccttt aggaataggt gtcacaggcc 6000 accctgcttt caataagttc aaagatgcag aaaattctaa cacaaatcca gcccaaggta 6060 aagatgacag ggtgaatgtt tgtctggacc ctaagcaggt tcagcttttc attgtaggat 6120 gcactccttg tgatggggaa cattgggacg ttgcaaaggc atgcacagat ctcaagcctg 6180 gcgattgtcc tccactagag ctagtaaatt ctaccataca agatggagag atgtgtgata 6240 cagggtttgg caatatgaac tttagcacac tgcaaaagag caaatcggga gcacccttgg 6300 acataatcaa tcaagttgtt aaatacccag attttctaaa aatgggcagt gacccttatg 6360 gtaactccat gtttttttat gctaaacgag aacaaatgta tgtgaggcat ctatggtcca 6420 gggcaggcac attaggtgat gacattcctg caaatggaga caccaacccc tattttctgt 6480 ctggcgattc ggctttacct acctcagtat actttgggag ccctagtggg tcattagttt 6540 ccagtgatca gcaaatttat aatcgtccgt tttggattca aagagcccaa ggcagcaaca 6600 atgggatgtg ttggaataat gagctttttg tcactgctgt ggacagtaca cgaggaacta 6660 acttcacaat ttccgtgcac accagtcagc ctgagcccct gccccaggac cgatatgcag 6720 ctaccaaatt taagcattat ctcagacatg ttgaagaatg ggaactttca cttatacttc 6780 agctgtgtgt tgttgatctc aaacctgaag ccttagccca tttgcacagc atgaatccct 6840 ctattataga caattggaat ttaggtttca tacagcctcc caataacatt gaagaccagt 6900 acagattcat aaattcacta gccaccagat gccctaaggc tgcagacgtg caggaaaaaa 6960 tagaccccta taaaggaatg cggttctggg atgtggacct aacagagagg ttctccctaa 7020 atttagagca gcattctcta ggcagaaaat tcctatttca aattggaaaa agagctccca 7080 aacggtctgc accgaaatcg gtcgcttttt caagttccag caaaaaggcg ccaaagcgta 7140 ggcggaaaaa tgtctaggcg ccaatccccg aggcactgtg atactgatgg ttgtgctgat 7200 tgttgttatg tttcctgcat gaatactcaa aataaaatga agatttactg atattcggtg 7260 tttgtcagtt gtttttcact cctatctttg tttgtgcaag aaa 7303 //