ID AB187597; SV 1; circular; genomic DNA; STD; PRO; 3624 BP. XX AC AB187597; XX DT 15-FEB-2005 (Rel. 82, Created) DT 14-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Bifidobacterium longum plasmid pTB6 DNA, complete sequence. XX KW . XX OS Bifidobacterium longum OC Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; OC Bifidobacteriaceae; Bifidobacterium. OG Plasmid pTB6 XX RN [1] RP 1-3624 RA Kano Y.; RT ; RL Submitted (12-AUG-2004) to the INSDC. RL Yasunobu Kano, Institute of Molecular and Cellular Biology for RL Pharmaceutical Sciences, Kyoto Pharmaceutical University, Department of RL Molecular Genetics; 1 Shichono-cho, Misasagi, Yamashina-ku, Kyoto, Kyoto, RL 607-8412, Japan (E-mail:ykano@mb.kyoto-phu.ac.jp, Tel:81-75-595-4719, RL Fax:81-75-595-4799) XX RN [2] RX DOI; 10.1271/bbb.69.422. RX PUBMED; 15725673. RA Tanaka K., Samura K., Kano Y.; RT "Structural and functional analysis of pTB6 from Bifidobacterium longum"; RL Biosci. Biotechnol. Biochem. 69(2):422-425(2005). XX FH Key Location/Qualifiers FH FT source 1..3624 FT /organism="Bifidobacterium longum" FT /plasmid="pTB6" FT /mol_type="genomic DNA" FT /db_xref="taxon:216816" FT CDS 872..1564 FT /codon_start=1 FT /transl_table=11 FT /gene="repB" FT /product="Replication protein RepB" FT /db_xref="GOA:Q5FBB2" FT /db_xref="InterPro:IPR000525" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q5FBB2" FT /protein_id="BAD89593.1" FT /translation="MRLRKNLTNKQLADKIVQTNARLLALNYMFEDSGKIIQFALFTKF FT VTDPQEATLAVGVNEEFAFLLNDLTSQFTRFELAEFADLKSKYAKEFYRRPKQYRSSGI FT WKIGRDEFCRLLGVPPSAITQTRYLNQKVLQPIQEECGPLLGLKIERQYVKRRLSGFVF FT TFARETPPVIDARPVEARKTDGDGKGHWTSVAGYGEVFTTTALFDVTAARAHFDGTVEA FT GECRFSRV" FT CDS 1543..2355 FT /codon_start=1 FT /transl_table=11 FT /gene="membB" FT /product="putative membrane protein MembB" FT /db_xref="UniProtKB/TrEMBL:Q5FBB1" FT /protein_id="BAD89594.1" FT /translation="MPFLARLTRATANIMRGTPEGCSSGRVRASGAGLRLPWVDLPLFG FT LTLVCALPDLPEQVGLGPGGASLLERAALPQVLGLAQVQRLVTGRLGPVLSLCRVLRLC FT ALFWPCAVRGPSPVRGLASRSRPARPCSSRLSSSATSPVLGCMSWSWMVLVVLMRNLLA FT WSQSLGMSASSSHGTAPRSFSDCSPATCSAFRSSLPRLKTFASLASREAARATSMICLA FT ASNSSVPWLLHHSSRFLTSALAPMSFPRIAAVWSALSASSWRRASPSK" FT CDS complement(2212..3300) FT /codon_start=1 FT /transl_table=11 FT /gene="mobA" FT /product="mobilization protein MobA" FT /db_xref="GOA:Q5FBB0" FT /db_xref="InterPro:IPR005053" FT /db_xref="UniProtKB/TrEMBL:Q5FBB0" FT /protein_id="BAD89595.1" FT /translation="MAIYHLSVSNVSRASGSRATATLSYITGKRVHDERRGETYDYGRK FT ERVLRVGTLLPEGAPAEFADPAVLFNAVELHETGRTARPAKKIVVALPREFTPRQRVQA FT LEEYIRENLNADGYAATYAIHEDREGNNPHAHILVANRQIDPATGGWARLKQRMEYVLD FT ERGERVPLIDPETGRQKTDKRGRRQWKRTSVSLNPLDRKAKLKALRESWAKTCNARLDE FT TARIDHRSLEDQGSDLEPTIHEGYAARAIERAGGVSERCEANREIRRSNGLLTSIRTEL FT GRIFDRLGELFAAKIRAAAPTPGEAGTGQGAELALLRGRRAPPARSRQGRPHGSDPWKT FT HGSQGRREEPRGVVEEPRHRGV" FT CDS join(3587..3624,1..517) FT /codon_start=1 FT /transl_table=11 FT /gene="orf1" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q5FBA9" FT /protein_id="BAD89596.1" FT /translation="MVKSLDEQIKSLQIGRPAQGPRERPRGAAQGTRTQGPHQAPDRGR FT RDGRVGRGLRGRRREGQGAHRPPRAARLPGGVPVLHRRDGQLHEPRGPQGHRRQGSGTQ FT RQDQRWHELEPPGPRLRGAERGMAQKGRRDQRPMGQRRGGRIPAALIRAGQPRTQDSPD FT ALRWPDLTSEKRRCAPFLNLL" XX SQ Sequence 3624 BP; 576 A; 1181 C; 1178 G; 689 T; 0 other; gataggcagg ccagctcaag gcccgcgaga acgacctcgt ggcgcggcgc agggaacgcg 60 aacgcaaggc ccgcaccaag cgcctgatcg aggtcggcgc gatggccgag tcggccgcgg 120 gcttcgaggg aggcgacgag agggccaagg agcacatcgc ccgcctcgtg cagctcggct 180 ccctggtgga gtccctgtgc tccaccgacg tgatggccaa ctacacgagc cgcgaggacc 240 tcagggccac cgtcgccaag gctctggaac acaacgtcag gaccagcgat ggcatgaact 300 ggaacctcca ggacctcgtc tacgaggcgc tgagcgagga atggcgcaaa agggacggcg 360 agatcagcga cccatgggcc aacgacgagg cggacggata ccagccgccc tcatacgagc 420 cggtcaaccc cgaacgcagg actccccaga cgccctccga tggcctgatc tgacgtccga 480 aaaaaggcgc tgtgcgccct ttttaaatct tttataaatc tttttacatt cttttagccc 540 ctccgcagcc ttactctccc aacgggtttc agccgaaacc tacaccaaaa ggggagcgaa 600 cctacaccaa aaggggagcg aacctacacc aaaaggggag cgaacctaca ccaaaagggg 660 agctatatac accttttgtt atttaaggtg caagttgtgc tatgctgagg ccatgtccaa 720 tgagatcgtg aagttcagca accagttcaa caacgtcgcg ctgaagaagt tcgacgccgt 780 gcacctggac gtgctcatgg cgatcgcctc aagggtgagg gagaagggca cggccacggt 840 ggagttctcg ttcgaggagc tgcgcggcct catgcgattg aggaagaacc tgaccaacaa 900 gcagctggcc gacaagatcg tgcagacgaa cgcgcgcctg ctggcgctga actacatgtt 960 cgaggattcg ggcaagatca tccagttcgc gctgttcacg aagttcgtca ccgacccgca 1020 ggaggcgact ctcgcggttg gggtcaacga ggagttcgcg ttcctgctca acgacctgac 1080 cagccagttc acgcgcttcg agctggccga gttcgccgac ctcaagagca agtacgccaa 1140 ggagttctac cgcaggccca agcagtaccg cagctccgga atctggaaga tcggccgcga 1200 cgagttctgc cgactgcttg gcgttccacc gtcggcaata acccagacac gatatctgaa 1260 tcagaaggtt cttcagccaa ttcaggagga gtgtgggcct ctccttggcc tgaagatcga 1320 gcgccagtac gtgaaacgca ggctgtcggg cttcgtgttc acattcgccc gcgagacccc 1380 tccggtgatc gacgccaggc ccgtggaggc gaggaagacg gacggcgacg gcaagggcca 1440 ttggacgagc gttgccgggt acggcgaggt gttcacgacc acggcgttgt tcgacgtgac 1500 ggccgcccgg gctcacttcg acggcaccgt ggaggccggg gaatgccgtt tctcgcgcgt 1560 ttgacgcgcg caaccgcgaa catcatgcgc ggaacgccgg aaggctgttc tagcggccgt 1620 gtccgcgcct ctggggcggg tttgcgcctg ccatgggtcg atctgccgct gttcggcctc 1680 acgctggtct gtgcgctgcc tgatctccct gagcaggtcg gccttggtcc tgggggcgct 1740 tcgctcctcg aacgggccgc tctcccccag gtcctcgggc tcgctcaggt ccaacggctc 1800 gtcaccggac ggctcgggcc ggttctctcc ctgtgccggg ttctccgcct gtgcgcgttg 1860 ttctggccat gcgcagtgcg agggccttca cctgttcggg gcttggcttc tcgttctcgg 1920 cccgctcggc cctgttcgag ccgcctctcc agttcggcca cgagcccggt ccttggctgc 1980 atgtcgtggt cgtggatggt cttggtggtc ctcatgcgga acctgttggc ctggtcccag 2040 tcgctcggga tgtcggcgtc ttcgagccat ggcaccgccc cgcgcagctt ctcggactgc 2100 tccccggcca cctgttcggc gttccgcagc agcctgccgc gcttgaagac gttcgcgtcc 2160 ctggcctcgc gcgaggcggc tcgcgccacg tcgatgatct gcttggcggc ctcaaactcc 2220 tcggtgccgt ggctcctcca ccactcctcg cggttcctca cgtcggcctt ggctcccatg 2280 agttttccac ggatcgctgc cgtgtggtcg gccctgtcgg cttcgagctg gcggcgcgcg 2340 tcgccctcga agtagcgcca gttcggctcc ctggccggtt ccggcctcgc ctggcgttgg 2400 cgcagctgcc ctgatcttgg cggcgaacag ctcgcccagg cggtcgaata tccggccgag 2460 ttcggtgcgg atggaggtca gcaggccgtt gctgcgcctg atctcacggt tggcctcgca 2520 cctctcgctg acgcccccgg cccgttcgat ggccctggcc gcgtagccct cgtggatggt 2580 gggttcgagg tcgctgccct ggtcctcgag gctcctgtgg tcgattctcg cggtctcgtc 2640 cagccgcgcg ttacaggtct tcgcccagga ttcgcgcagg gccttgagct tggccttccg 2700 gtcgagcggg ttcagggaca cgctcgtgcg cttccactgc ctgcggcccc gcttgtcggt 2760 cttctgcctg ccggtctcgg ggtcgatcag cggcacccgc tctccccgct cgtccagcac 2820 gtactccatg cgctgcttga gcctggccca gccgcccgtg gccgggtcga tctgccggtt 2880 ggcgacgagg atgtgcgcgt gcggattgtt gccctccctg tcctcgtgga tggcgtaggt 2940 ggccgcgtag ccgtccgcgt tcaggttctc gcggatgtac tcctccagcg cctgcacgcg 3000 ctgcctgggg gtgaactcgc gcggcagggc caccacgatc ttcttggccg gcctcgccgt 3060 ccgtccggtc tcgtgcagct cgaccgcgtt gaacagcacg gcggggtcgg cgaactcggc 3120 cggcgcgccc tccggcagca gggtgccgac gcgcagcacg cgctccttgc gcccgtagtc 3180 gtaggtctcg ccgcgccgct cgtcatgcac ccgcttgccg gtgatgtacg agagcgtggc 3240 cgtggccctg gaaccgctcg cgcggctcac gttggagacg gacagatggt agatcgccat 3300 cggcttcggc tcctttcgtg atcggccagg gcggtggggt gcggggcggc ggccctgcgg 3360 caaggggttc ctaggggtgc ggcgagcacc cgctgggcct gccgggaggc tcccccggaa 3420 gggtgggaat ccaaagggca aggcccgtgg cccccggagg gcgcgcttac ggaaaatgca 3480 acctccggtt gcatgtaagt gcgccctaat ctttgattag ggatttcctt gctggtagaa 3540 tcatatcacc atacggatga tgcagaccat gtaaggagcc gtttcgatgg tgaagagcct 3600 ggatgagcag atcaagtccc tgca 3624 //