The main tool for downloading ENA data is the ENA Browser, which is available through REST URLs for easy programmatic use. All ENA data, except SRA sequences and qualities, are available through the ENA Browser.
The ENA data formats are described here.
Downloading EMBL-Bank data through FTP
EMBL-Bank data is made available for bulk downloading through ftp ... more details.
Downloading SRA data through FTP or Aspera
SRA data is made available for bulk downloading through ftp and Aspera ... more details.
Downloading Taxonomy data through FTP
Taxononomy data is made available for bulk downloading through ftp ... more details.
Downloading Trace data through FTP or Aspera
Trace data is made available for bulk downloading through ftp and Aspera at ftp://ftp.sra.ebi.ac.uk/vol1/trace/
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