List of URLs for external database identifiers

The uniform resource locator (URL) to an identifier issued by a data resource constitutes a reference to a record from the data resource.

A web address to a particular record/object of the external data resouce cross-referencing to ENA can be resolved by using the URL template specified below for each resource and replacing the variable '_ID_' with an alphanumeric identifier of the record issued by that particular external data resource.

For instance, for Ensembl transcript record ENSGALT00000005001, 'http://www.ensembl.org/id/__ID__' becomes 'http://www.ensembl.org/id/ENSGALT00000005001'.

External resource URL template
ArrayExpress http://www.ebi.ac.uk/arrayexpress/experiments/__ID__
CABRI http://www.cabri.org/CABRI/srs-bin/wgetz?-page+qResult+-e+[libs{DSMZ_MUTZ}-id:]
CCAP http://www.ccap.ac.uk/strain_info.php?Strain_No=__ID__
dictyBase http://dictybase.org/gene/__ID__
Ensembl Genes http://www.ensembl.org/id/__ID__
Ensembl Transcripts http://www.ensembl.org/id/__ID__
Ensembl Scaffolds and Chromosomes http://www.ensembl.org/__SECONDARY_ID__/Location/View?r=__ID__
Ensembl Genomes Genes http://www.ensemblgenomes.org/id/__ID__
Ensembl Genomes Transcripts http://www.ensemblgenomes.org/id/__ID__
EPD http://epd.vital-it.ch/cgi-bin/query_result.pl?out_format=NICE&from=-499&to=100&Entry_0=OS_bAAWD#prom__ID__
Europe PMC http://europepmc.org/articles/__ID__
FlyBase http://flybase.org/reports/__ID__.html
GOA http://www.ebi.ac.uk/QuickGO/GProtein?ac=__ID__
GrainGenes http://wheat.pw.usda.gov/report?class=sequence&name=__ID__
GtRNAdb http://lowelab.ucsc.edu/GtRNAdb/__ID__/__ID__-summary.html
lncRNAdb http://www.lncrnadb.org/Detail.aspx?TKeyID=__ID__
HGNC http://www.genenames.org/data/hgnc_data.php?hgnc_id=__ID__
H-InvDB http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=__ID__
IMGT/HLA http://www.ebi.ac.uk/cgi-bin/ipd/imgt/hla/get_allele.cgi?__ID__
IMGT/LIGM http://www.imgt.org/IMGTlect/?query=201+__ID__
Interpro http://www.ebi.ac.uk/interpro/ISearch?query=__ID__
IPD-KIR http://www.ebi.ac.uk/cgi-bin/ipd/kir/get_allele.cgi?__ID__
IPD-MHC http://www.ebi.ac.uk/cgi-bin/ipd/mhc/get_allele.cgi?_ID_
miRBase http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=_ID_
MGI http://www.informatics.jax.org/marker/MGI:__ID__
PDB http://pdbe.org/__ID__
PomBase http://www.pombase.org/spombe/result/__ID__
PR2 http://ssu-rrna.org/taxonomy.php?q=__ID__
Rfam http://rfam.sanger.ac.uk//family/__ID__
SGD http://www.yeastgenome.org/cgi-bin/locus.fpl?dbid=__ID__
SILVA-LSU http://www.arb-silva.de/browser/lsu/__ID__
SILVA-SSU http://www.arb-silva.de/browser/ssu/__ID__
SRPDB http://rnp.uthscsa.edu/rnp/SRPDB/rna/sequences/fasta/__ID__.fasta
StrainInfo http://www.straininfo.net/strains/__ID__
SVA http://www.ebi.ac.uk/cgi-bin/sva/sva.pl?search=Go&query=__ID__
tmRNA-Website http://bioinformatics.sandia.gov/tmrna/seqs/__ID__.html
UniLib http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+qResult+-e+[UNILIB:'__ID__']
UniProtKB/Swiss-Prot http://www.uniprot.org/uniprot/__ID__
UniProtKB/TrEMBL http://www.uniprot.org/uniprot/__ID__
Unite http://unite.ut.ee/bl_forw_insd.php?seq_id_db=__ID__
VectorBase http://www.vectorbase.org/Search/Keyword/?term=__ID__&organism=all
VEGA Genes http://vega.sanger.ac.uk/__SECONDARY_ID__/Gene/Summary?g=__ID__
VEGA Transcripts http://vega.sanger.ac.uk/__SECONDARY_ID__/Gene/Summary?t=__ID__
VBASE2 http://www.vbase2.org/vgene.php?id=__ID__
WormBase http://www.wormbase.org/db/gene/gene?class=CDS;name=__ID__
WoRMS http://www.marinespecies.org/aphia.php?p=taxdetails&id=__ID__
ZFIN http://zfin.org/cgi-bin/webdriver?MIval=aa-markerview.apg&OID=__ID__

Latest ENA News

20 Aug 2014: Read data through Globus GridFTP
Read data can now be downloaded using Globus GridFTP through ebi#ena Globus Online public endpoint.

18 Aug 2014: Changes to SRA XML 1.5
Small changes to Experiment XML, Analysis XML, EGA Dataset XML, EGA DAC XMLs were deployed on 11th of August 2014.

1 Jul 2014: ENA release 120
Release 120 of ENA's assembled/annotated seqences now available

23 May 2014: Change to date format for advanced search
From 16th June 2014, the date format used in the advanced search will be changed to ISO format (YYYY-MM-DD).

20 May 2014: Update to the ENA SAMPLE checklist
From 10th of June 2014 the ENA SAMPLE checklist XML will be updated and the older version will be deprecated.