<?xml version="1.0" encoding="utf-8" ?>
<?xml-stylesheet type="text/xsl" href="/efo/transforms/bioportal_bean.xsl"?>
<BioportalConcept>
  <label>Duration</label>
  <id>nif_inv:birnlex_2052</id>
  <fullId>http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2052</fullId>
  <relations>
    <BioportalEntry>
      <strings>
        <string>SubClass</string>
      </strings>
      <list>
        <BioportalConcept>
          <label>TR</label>
          <id>nif_inv:birnlex_2008</id>
          <fullId>http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2008</fullId>
          <synonyms>
            <string>MRI repetition time</string>
            <string>Repetition time</string>
          </synonyms>
          <definitions>
            <string>The time interval between successive initial excitation pulses in one full playout of a pulse sequence. This is also often used in reference to the time it takes to acquire the entire volume being imaged (e.g., the brain, the ventral surface of the brain).</string>
          </definitions>
          <relations>
            <BioportalEntry>
              <strings>
                <string>SubClass</string>
              </strings>
              <list/>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>rdfs:label</string>
              </strings>
              <list>
                <string>TR</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>rdfs:subClassOf</string>
              </strings>
              <list>
                <BioportalConcept>
                  <label>Duration</label>
                  <id>nif_inv:birnlex_2052</id>
                  <fullId>http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2052</fullId>
                  <relations/>
                  <type>class</type>
                </BioportalConcept>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>definition</string>
              </strings>
              <list>
                <string>The time interval between successive initial excitation pulses in one full playout of a pulse sequence. This is also often used in reference to the time it takes to acquire the entire volume being imaged (e.g., the brain, the ventral surface of the brain).</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>preferred label</string>
              </strings>
              <list>
                <string>TR</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>birn_annot:hasCurationStatus</string>
              </strings>
              <list>
                <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:createdDate</string>
              </strings>
              <list>
                <string>2007-03-09</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>birn_annot:hasBirnlexCurator</string>
              </strings>
              <list>
                <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner</string>
                <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>InstanceCount</string>
              </strings>
              <counter>0</counter>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:synonym</string>
              </strings>
              <list>
                <string>Repetition time</string>
                <string>MRI repetition time</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>RdfType</string>
              </strings>
              <list/>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>ChildCount</string>
              </strings>
              <counter>0</counter>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:tempDefinition</string>
              </strings>
              <list>
                <string>The amount of time that exists between successive pulse sequences applied to the same slice. It is delineated by initiating the first RF pulse of the sequence then repeating the same RF pulse at a time t. Variations in the value of TR have an important effect on the control of image contrast characteristics. Short values of TR (&lt; 1000 ms) are common in images exhibiting T1 contrast, and long values of TR (&gt; 1500 ms) are common in images exhibiting T2 contrast. TR is also a major factor in total scan time.</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:modifiedDate</string>
              </strings>
              <list>
                <string>February 9, 2009</string>
                <string>2007-03-09</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>owl:versionInfo</string>
              </strings>
              <list>
                <string>TODO:</string>
              </list>
            </BioportalEntry>
          </relations>
          <type>class</type>
        </BioportalConcept>
        <BioportalConcept>
          <label>TE</label>
          <id>nif_inv:birnlex_2070</id>
          <fullId>http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2070</fullId>
          <synonyms>
            <string>Echo time</string>
            <string>MRI echo time</string>
          </synonyms>
          <definitions>
            <string>The time interval between excitation and data acquisition of the center of k-space. This is also referred to as echo time and typically measured in units of milliseconds. (Huettel, Song, &amp; McCarthy, 2004).</string>
          </definitions>
          <relations>
            <BioportalEntry>
              <strings>
                <string>SubClass</string>
              </strings>
              <list/>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>rdfs:label</string>
              </strings>
              <list>
                <string>TE</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>rdfs:subClassOf</string>
              </strings>
              <list>
                <BioportalConcept>
                  <label>Duration</label>
                  <id>nif_inv:birnlex_2052</id>
                  <fullId>http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2052</fullId>
                  <relations/>
                  <type>class</type>
                </BioportalConcept>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>definition</string>
              </strings>
              <list>
                <string>The time interval between excitation and data acquisition of the center of k-space. This is also referred to as echo time and typically measured in units of milliseconds. (Huettel, Song, &amp; McCarthy, 2004).</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>preferred label</string>
              </strings>
              <list>
                <string>TE</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>birn_annot:hasCurationStatus</string>
              </strings>
              <list>
                <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:createdDate</string>
              </strings>
              <list>
                <string>2007-03-09</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>birn_annot:hasBirnlexCurator</string>
              </strings>
              <list>
                <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner</string>
                <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>InstanceCount</string>
              </strings>
              <counter>0</counter>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:synonym</string>
              </strings>
              <list>
                <string>MRI echo time</string>
                <string>Echo time</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>RdfType</string>
              </strings>
              <list/>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>ChildCount</string>
              </strings>
              <counter>0</counter>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:tempDefinition</string>
              </strings>
              <list>
                <string>This is an imaging parameter which helps determine image contrast. It represents the time in milliseconds between the application of the 90degree pulse and the peak of the echo signal in Spin Echo and Inversion Recovery pulse sequences</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:modifiedDate</string>
              </strings>
              <list>
                <string>2007-03-09</string>
              </list>
            </BioportalEntry>
          </relations>
          <type>class</type>
        </BioportalConcept>
        <BioportalConcept>
          <label>TA</label>
          <id>nif_inv:birnlex_2062</id>
          <fullId>http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2062</fullId>
          <synonyms>
            <string>MRI acquitision time</string>
          </synonyms>
          <definitions>
            <string>The time between the initial pulse and the end of the data acquisition.  Note that there may be an additional delay placed at the end of the acquisition to achieve a certain repetition time (TR)</string>
          </definitions>
          <relations>
            <BioportalEntry>
              <strings>
                <string>SubClass</string>
              </strings>
              <list/>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>rdfs:label</string>
              </strings>
              <list>
                <string>TA</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>rdfs:subClassOf</string>
              </strings>
              <list>
                <BioportalConcept>
                  <label>Duration</label>
                  <id>nif_inv:birnlex_2052</id>
                  <fullId>http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2052</fullId>
                  <relations/>
                  <type>class</type>
                </BioportalConcept>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>definition</string>
              </strings>
              <list>
                <string>The time between the initial pulse and the end of the data acquisition.  Note that there may be an additional delay placed at the end of the acquisition to achieve a certain repetition time (TR)</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>preferred label</string>
              </strings>
              <list>
                <string>TA</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>birn_annot:hasCurationStatus</string>
              </strings>
              <list>
                <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:createdDate</string>
              </strings>
              <list>
                <string>2007-03-09</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>birn_annot:hasBirnlexCurator</string>
              </strings>
              <list>
                <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner</string>
                <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>InstanceCount</string>
              </strings>
              <counter>0</counter>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:synonym</string>
              </strings>
              <list>
                <string>MRI acquitision time</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>RdfType</string>
              </strings>
              <list/>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>ChildCount</string>
              </strings>
              <counter>0</counter>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:tempDefinition</string>
              </strings>
              <list>
                <string>The time the MRI scanner takes to collect an MRI image.</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:modifiedDate</string>
              </strings>
              <list>
                <string>2007-03-09</string>
              </list>
            </BioportalEntry>
          </relations>
          <type>class</type>
        </BioportalConcept>
      </list>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>rdfs:label</string>
      </strings>
      <list>
        <string>Duration</string>
      </list>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>rdfs:subClassOf</string>
      </strings>
      <list>
        <BioportalConcept>
          <label>Temporal characteristic value</label>
          <id>nif_inv:birnlex_2175</id>
          <fullId>http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2175</fullId>
          <relations/>
          <type>class</type>
        </BioportalConcept>
      </list>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>preferred label</string>
      </strings>
      <list>
        <string>Duration</string>
      </list>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>birn_annot:hasCurationStatus</string>
      </strings>
      <list>
        <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated</string>
      </list>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>obo_annot:createdDate</string>
      </strings>
      <list>
        <string>2007-03-09</string>
      </list>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>birn_annot:hasBirnlexCurator</string>
      </strings>
      <list>
        <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug</string>
      </list>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>SuperClass</string>
      </strings>
      <list>
        <BioportalConcept>
          <label>Temporal characteristic value</label>
          <id>nif_inv:birnlex_2175</id>
          <fullId>http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2175</fullId>
          <relations>
            <BioportalEntry>
              <strings>
                <string>InstanceCount</string>
              </strings>
              <counter>0</counter>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>SubClass</string>
              </strings>
              <list/>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>RdfType</string>
              </strings>
              <list/>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>rdfs:subClassOf</string>
              </strings>
              <list>
                <BioportalConcept>
                  <label>Quantitative value</label>
                  <id>http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11004</id>
                  <fullId>http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11004</fullId>
                  <relations/>
                  <type>class</type>
                </BioportalConcept>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>rdfs:label</string>
              </strings>
              <list>
                <string>Temporal characteristic value</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>ChildCount</string>
              </strings>
              <counter>2</counter>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:tempDefinition</string>
              </strings>
              <list>
                <string>a type of quantitative value measured in units of time.</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:createdDate</string>
              </strings>
              <list>
                <string>2007-03-07</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>birn_annot:hasCurationStatus</string>
              </strings>
              <list>
                <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>preferred label</string>
              </strings>
              <list>
                <string>Temporal characteristic value</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>obo_annot:modifiedDate</string>
              </strings>
              <list>
                <string>2007-03-07</string>
              </list>
            </BioportalEntry>
            <BioportalEntry>
              <strings>
                <string>birn_annot:hasBirnlexCurator</string>
              </strings>
              <list>
                <string>http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF</string>
              </list>
            </BioportalEntry>
          </relations>
          <type>class</type>
        </BioportalConcept>
      </list>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>InstanceCount</string>
      </strings>
      <counter>0</counter>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>RdfType</string>
      </strings>
      <list/>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>ChildCount</string>
      </strings>
      <counter>3</counter>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>obo_annot:tempDefinition</string>
      </strings>
      <list>
        <string>A type of temporal characteristic value where the time measured is that between the occurance of two events.</string>
      </list>
    </BioportalEntry>
    <BioportalEntry>
      <strings>
        <string>obo_annot:modifiedDate</string>
      </strings>
      <list>
        <string>2007-03-09</string>
      </list>
    </BioportalEntry>
  </relations>
  <type>class</type>
</BioportalConcept>

