2.20 Bioportal mappings to BRENDA tissue / enzyme source (BTO) verunknown Bioportal mappings to Cell type (CL) verunknown Bioportal mappings to Chemical entities of biological interest (CHEBI) verunknown Bioportal mappings to Drosophila gross anatomy (FBbt) ver2011-02-10 Bioportal mappings to Foundational Model of Anatomy (FMA) ver3.1 Bioportal mappings to Gene Ontology (GO) ver1.886 Bioportal mappings to Human disease (DOID) ver Bioportal mappings to International Classification of Diseases (ICD-9) ver9 Bioportal mappings to MGED Ontology (MO) ver1.3.1.1 Bioportal mappings to Malaria Ontology (IDOMAL) ver1.22 Bioportal mappings to Mammalian phenotype (MP) vernull Bioportal mappings to Medical Subject Headings (MSH) ver2011_2010_08_30 Bioportal mappings to Microarray experimental conditions (MO) ver1.3.1.1 Bioportal mappings to Minimal anatomical terminology (MAT) ver1.1 Bioportal mappings to Mosquito gross anatomy (TGMA) verunknown Bioportal mappings to NCBI organismal classification (NCBITaxon) ver1.2 Bioportal mappings to NCI Thesaurus (NCIt) ver11.01e Bioportal mappings to NIFSTD (nif) ver2.2 - December 20, 2010 Bioportal mappings to Ontology for Biomedical Investigations (OBI) ver2010-10-26 Vancouver 2010 release, RC2 Bioportal mappings to Phenotypic quality (PATO) vernull Bioportal mappings to SNOMED Clinical Terms (SNOMEDCT) ver2010_07_31 Bioportal mappings to Teleost Anatomy Ontology (TAO) vernull Bioportal mappings to Teleost anatomy and development (TAO) ver1.158 Bioportal mappings to Units of measurement (UO) vernull Bioportal mappings to Zebrafish anatomy and development (ZFA) verunknown Date: 19th January 2012 Ele Holloway Helen Parkinson James Malone Mappings to Plant structure (PO) Mappings: CRISP Thesaurus Version 2.5.2.0 Mappings: The Jackson Lab Mappings:The Arabidopsis Information Resource (TAIR) Tomasz Adamusiak Dani Welter Natalja Kurbatova animal component James Malone MAT:0000001 animal body part Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism.[accessedResource: TAO:0001308][accessDate: 05-04-2011] Anatomical structure, which is a subdivision of a cardinal body part; it may exclude bones; is demarcated from other subdivisions of the same cardinal body part by anatomical surfaces or lines or topographical references; together with other contiguous subdivisions of the same cardinal body part, it constitutes a cardinal body part. Examples: thorax, perineum, back of neck, forearm, hand, phalanx, nose, auricle of ear, scrotum. EV:0100008 FMAID:67504 James Malone MAT:0000293 Principal body part subdivision Principal body part subdivision[accessedResource: FMAID:67504][accessDate: 05-04-2011] Subdivision of cardinal body part Subdivision of cardinal body part[accessedResource: FMAID:67504][accessDate: 05-04-2011] TAO:0001308 XAO:0003013 anatomical site body part body part[accessedResource: TAO:0001308][accessDate: 05-04-2011] organism subdivision organism subdivision[accessedResource: TAO:0001308][accessDate: 05-04-2011] animal developmental tissue . .[accessedResource: FBbt:00000052][accessDate: 05-04-2011] Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells. Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[accessedResource: TAO:0001105][accessDate: 05-04-2011] FBbt:00000052 James Malone TAO:0001105 embryo embryo[accessedResource: FBbt:00000052][accessDate: 05-04-2011] embryonic structure embryonic structure[accessedResource: TAO:0001105][accessDate: 05-04-2011] animal fluid James Malone MAT:0000020 fluid - animal fluid - animal[accessedResource: MAT:0000020][accessDate: 05-04-2011] appendage James Malone MAT:0000023 cardiovascular system BTO:0000088 CARDIOVASC SYSTEM CARDIOVASC SYSTEM[accessedResource: MSH:D002319][accessDate: 05-04-2011] CV system CV system[accessedResource: FMAID:7161][accessDate: 05-04-2011] Cardiovascular Systems Cardiovascular Systems[accessedResource: MSH:D002319][accessDate: 05-04-2011] EHDAA:394 EMAPA:16104 EV:0100017 FBbt:00005057 FMAID:7161 Herz und Gefaesssystem James Malone MA:0000010 MAT:0000016 MFO:000290 MSH:D002319 Organ system which consists of the heart, the systemic and pulmonary arterial and venous system, the lymphatic and the portal venous system. SAEL:16 System, Cardiovascular System, Cardiovascular[accessedResource: MSH:D002319][accessDate: 05-04-2011] Systems, Cardiovascular Systems, Cardiovascular[accessedResource: MSH:D002319][accessDate: 05-04-2011] TADS:0000146 TAO:0000010 The HEART and the BLOOD VESSELS by which BLOOD is pumped and circulated through the body. The HEART and the BLOOD VESSELS by which BLOOD is pumped and circulated through the body.[accessedResource: MSH:D002319][accessDate: 05-04-2011] The system of heart and blood vessels. The system of heart and blood vessels.[accessedResource: BTO:0000088][accessDate: 05-04-2011] Tomasz Adamusiak XAO:0000100 ZFA:0000010 circulatory system circulatory system[accessedResource: FBbt:00005057][accessDate: 05-04-2011] craniofacial tissue FBbt:00003007 James Malone MA:0000316 MAT:0000017 Organism subdivision which is the part of the body which consists of the cranial and pharyngeal regions. Organism subdivision which is the part of the body which consists of the cranial and pharyngeal regions.[accessedResource: ZFA:0001114][accessDate: 05-04-2011] TGMA:0000720 The larval cranium exclusive of the dorsal apotome. The larval cranium exclusive of the dorsal apotome.[accessedResource: TGMA:0000720][accessDate: 05-04-2011] ZFA:0001114 adult head adult head[accessedResource: FBbt:00003007][accessDate: 05-04-2011] epicranial plate epicranial plate[accessedResource: TGMA:0000720][accessDate: 05-04-2011] head head tissue head[accessedResource: ZFA:0001114][accessDate: 05-04-2011] digestive system component AAO:0000129 Alimentary system[accessedResource: FMAID:7152][accessDate: 05-04-2011] Digestive system EHDAA:514 EMAPA:16246 EV:0100056 FBbt:00005055 FMAID:7152 James Malone MA:0000323 MAT:0000018 MFO:0002980 SAEL:28 TADS:0000170 TAO:0000339 The organ system involved in the absorption of nutrients. The organ system involved in the absorption of nutrients.[accessedResource: FBbt:00005055][accessDate: 05-04-2011] WBbt:0005748 XAO:0000125 ZFA:0000339 alimentary system digestive system[accessedResource: FBbt:00005055][accessDate: 05-04-2011] gastrointestinal system Drosophila component Tomasz Adamusiak endocrine system Body System, Endocrine/Metabolic Body System, Endocrine/Metabolic[accessedResource: NCIt:C12705][accessDate: 05-04-2011] Collective designation for those tissues capable of secreting hormones. Collective designation for those tissues capable of secreting hormones.[accessedResource: NCIt:C12705][accessDate: 05-04-2011] Endocrine system (all sites) Endocrine system (all sites)[accessedResource: NCIt:C12705][accessDate: 05-04-2011] Endocrine/Metabolic Body System Endocrine/Metabolic Body System[accessedResource: NCIt:C12705][accessDate: 05-04-2011] Endocrine/Metabolic Organ System Endocrine/Metabolic Organ System[accessedResource: NCIt:C12705][accessDate: 05-04-2011] FMAID:9668 Hormonal System Hormonal System[accessedResource: NCIt:C12705][accessDate: 05-04-2011] Metabolic/Endocrine Body System Metabolic/Endocrine Body System[accessedResource: NCIt:C12705][accessDate: 05-04-2011] NCIt:C12705 Organ System, Endocrine/Metabolic Organ System, Endocrine/Metabolic[accessedResource: NCIt:C12705][accessDate: 05-04-2011] Systema endocrinum Systema endocrinum[accessedResource: FMAID:9668][accessDate: 05-04-2011] endocrine system component An endocrine system component is a defined classt to caputre the partonomy of the endocrine system. Tomasz Adamusiak esophageal epithelium NCIt:C49221 Tomasz Adamusiak fat tissue A specialized form of connective tissue consisting primarily of adipocytes (fat cells), surrounded by a meshwork of collagen fibers. A specialized form of connective tissue consisting primarily of adipocytes (fat cells), surrounded by a meshwork of collagen fibers.[accessedResource: NCIt:C12472][accessDate: 05-04-2011] Adipose Tissue Adipose Tissue[accessedResource: NCIt:C12472][accessDate: 05-04-2011] An organ system pertaining to fat. BODYFAT BODYFAT[accessedResource: NCIt:C12472][accessDate: 05-04-2011] BTO:0001487 Body Fat Body Fat[accessedResource: NCIt:C12472][accessDate: 05-04-2011] Connective tissue in which fat is stored and which has the cells distended by droplets of fat. Connective tissue in which fat is stored and which has the cells distended by droplets of fat.[accessedResource: BTO:0001487][accessDate: 05-04-2011] EV:0100382 FBbt:00005065 James Malone MA:0000009 NCIt:C12472 SAEL:2 The system of organs and cells involved in fat storage. The system of organs and cells involved in fat storage.[accessedResource: FBbt:00005065][accessDate: 05-04-2011] adipose adipose system adipose system[accessedResource: FBbt:00005065][accessDate: 05-04-2011] adipose[accessedResource: NCIt:C12472][accessDate: 05-04-2011] fat foetal structure genitourinary system Tomasz Adamusiak urogenital system gland A cell, group of cells, or organ of endothelial origin that selectively removes materials from the blood, concentrates or alters them, and secretes them for further use in the body or for elimination from the body. A cell, group of cells, or organ of endothelial origin that selectively removes materials from the blood, concentrates or alters them, and secretes them for further use in the body or for elimination from the body.[accessedResource: BTO:0000522][accessDate: 05-04-2011] BTO:0000522 Druese Endocrine system of the adult. Endocrine system of the adult.[accessedResource: FBbt:00003214][accessDate: 05-04-2011] FBbt:00003214 James Malone MA:0002563 MA:0002564 SAEL:33 SAEL:37 TAO:0001158 XAO:0000158 adult endocrine system adult endocrine system[accessedResource: FBbt:00003214][accessDate: 05-04-2011] endocrine system endocrine system[accessedResource: TAO:0001158][accessDate: 05-04-2011] glandula haemopoietic system James Malone MA:0002434 MAT:0000022 SAEL:48 XAO:0000122 hematological system hematological system[accessedResource: MAT:0000022][accessDate: 05-04-2011] hematolymphoid system integumental system A division of the whole organism into specialized systems. A division of the whole organism into specialized systems.[accessedResource: FBbt:00004856][accessDate: 05-04-2011] AAO:0000239 BTO:0000634 EHDAA:6520 EMAPA:17524 EV:0100151 FBbt:00004856 FMAID:72979 Hautsystem Integumentary system Integumentary system[accessedResource: FMAID:72979][accessDate: 05-04-2011] James Malone MA:0000014 MAT:0000033 Something that covers or encloses; especially: an enveloping layer (as a skin, membrane, or husk) of an organism or one of its parts. Something that covers or encloses; especially: an enveloping layer (as a skin, membrane, or husk) of an organism or one of its parts.[accessedResource: BTO:0000634][accessDate: 05-04-2011] TADS:0000108 The taxon-independent term for the outer covering of an organism The taxon-independent term for the outer covering of an organism[accessedResource: MAT:0000033][accessDate: 05-04-2011] WBbt:0005730 XAO:0000176 dermal system dermoid system epithelial system - sensu C elegans integument integument[accessedResource: MAT:0000033][accessDate: 05-04-2011] organ system organ system[accessedResource: FBbt:00004856][accessDate: 05-04-2011] tegument iris Dani Welter MSH:D007498 The most anterior portion of the uveal layer, separating the anterior chamber from the posterior. It consists of two layers - the stroma and the pigmented epithelium. Color of the iris depends on the amount of melanin in the stroma on reflection from the pigmented epithelium. true ligament FMA:30319 James Malone liver and biliary system EHDAA:2189 EMAPA:16840 EV:0100088 James Malone MA:0000324 MAT:0000024 TAO:0000036 XAO:0000132 ZFA:0000036 muscular system AAO:0000307 BTO:0001485 EV:0100146 FBbt:00005069 James Malone MA:0000015 MAT:0000025 MFO:0002100 Muskelsystem TADS:0000324 TAO:0000548 The bodily system that is composed of skeletal, smooth, and cardiac muscle tissue and functions in movement of the body or of materials through the body, maintenance of posture, and heat production. The bodily system that is composed of skeletal, smooth, and cardiac muscle tissue and functions in movement of the body or of materials through the body, maintenance of posture, and heat production.[accessedResource: BTO:0001485][accessDate: 05-04-2011] WBbt:0005737 ZFA:0000548 motor system muscle muscle system muscle system[accessedResource: MAT:0000025][accessDate: 05-04-2011] muscle[accessedResource: TAO:0000548][accessDate: 05-04-2011] muscles muscles[accessedResource: TAO:0000548][accessDate: 05-04-2011] musculature musculature system musculature system[accessedResource: ZFA:0000548][accessDate: 05-04-2011] muscule system nervous system A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com) A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[accessedResource: TAO:0000396][accessDate: 05-04-2011] A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS).[accessedResource: ZFA:0000396][accessDate: 05-04-2011] AAO:0000324 All the nerve centers and nerve fibers in the central, visceral and peripheral nervous systems. All the nerve centers and nerve fibers in the central, visceral and peripheral nervous systems.[accessedResource: FBbt:00005093][accessDate: 05-04-2011] BTO:0001484 EHDAA:826 EMAPA:16469 EV:0100162 FBbt:00005093 FMAID:7157 James Malone MA:0000016 MAT:0000026 NIFSTD:birnlex_844 Nervensystem SAEL:71 TAO:0000396 The nervous system is essentially a biological information highway, and is responsible for controlling all the biological processes and movement in the body, and can also receive information and interpret it via electrical signals which are used in this nervous system. It consists of the Central Nervous System (CNS), essentially the processing area and the Peripheral Nervous System which detects and sends electrical impulses that are used in the nervous system. The nervous system is essentially a biological information highway, and is responsible for controlling all the biological processes and movement in the body, and can also receive information and interpret it via electrical signals which are used in this nervous system. It consists of the Central Nervous System (CNS), essentially the processing area and the Peripheral Nervous System which detects and sends electrical impulses that are used in the nervous system.[accessedResource: BTO:0001484][accessDate: 05-04-2011] Tomasz Adamusiak WBbt:0005735 XAO:0000177 ZFA:0000396 optic nerve Dani Welter MSH:D009900 The 2nd cranial nerve. The optic nerve conveys visual information from the retina to the brain. The nerve carries the axons of the retinal ganglion cells which sort at the optic chiasm and continue via the optic tracts to the brain. The largest projection is to the lateral geniculate nuclei; other important targets include the superior colliculi and the suprachiasmatic nuclei. Though known as the second cranial nerve, it is considered part of the central nervous system. second cranial nerve true pancreactic component respiratory system structure . .[accessedResource: FBbt:00005024][accessDate: 05-04-2011] A system of organs subserving the function of respiration and in air-breathing vertebrates consisting typically of the lungs and their nervous and circulatory supply and the channels by which these are continuous with the outer air. A system of organs subserving the function of respiration and in air-breathing vertebrates consisting typically of the lungs and their nervous and circulatory supply and the channels by which these are continuous with the outer air.[accessedResource: BTO:0000203][accessDate: 05-04-2011] AAO:0000541 Apparatus respiratorius Apparatus respiratorius[accessedResource: FMAID:7158][accessDate: 05-04-2011] Atmungssystem BTO:0000203 EHDAA:2203 EMAPA:16727 EV:0100036 FBbt:00005024 FMAID:7158 Functional system which consists of structures involved in respiration. James Malone MA:0000327 MAT:0000030 MFO:0003160 Respiratory system SAEL:90 TADS:0000043 TAO:0000272 XAO:0000117 apparatus respiratorius respiratory system[accessedResource: MAT:0000030][accessDate: 05-04-2011] respiratory tract tracheal system tracheal system[accessedResource: FBbt:00005024][accessDate: 05-04-2011] sensory system AAO:0000555 FBbt:00005155 James Malone MA:0002442 MAT:0000031 MFO:0003460 Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system. Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system.[accessedResource: FBbt:00005155][accessDate: 05-04-2011] TAO:0000182 WBbt:0005832 ZFA:0000282 central caudal thalamic nucleus central caudal thalamic nucleus[accessedResource: TAO:0000182][accessDate: 05-04-2011] central posterior thalamic nucleus central posterior thalamic nucleus[accessedResource: TAO:0000182][accessDate: 05-04-2011] sense organ sense organ[accessedResource: FBbt:00005155][accessDate: 05-04-2011] sensory systems sensory systems[accessedResource: ZFA:0000282][accessDate: 05-04-2011] skeletal system Anatomical system consisting of multiple elements and tissues that provides physical support. Anatomical system consisting of multiple elements and tissues that provides physical support.[accessedResource: TAO:0000434][accessDate: 05-04-2011] EHDAA:5047 EMAPA:17213 FMAID:23875 James Malone MA:0000018 MAT:0000032 Set of all bones Set of all bones[accessedResource: FMAID:23875][accessDate: 05-04-2011] Set of bones in the entire body. Set of bones of body Set of bones of body[accessedResource: FMAID:23875][accessDate: 05-04-2011] Skeleton (in vivo) Skeleton (in vivo)[accessedResource: FMAID:23875][accessDate: 05-04-2011] TAO:0000434 ZFA:0000434 skeleton skeleton component skeleton component[accessedResource: MAT:0000032][accessDate: 05-04-2011] skeleton[accessedResource: MAT:0000032][accessDate: 05-04-2011] skeleton structure zebrafish component Tomasz Adamusiak anatomy basic component James Malone MAT:0000000 true START EFO_0000787 http://www.ebi.ac.uk/efo/ -1507812194 animal component ISA EFO_0000786 http://www.ebi.ac.uk/efo/ -1507812195 anatomy basic component ISA EFO_0000635 http://www.ebi.ac.uk/efo/ -1507813312 organism part has_flag EFO_0004118 http://www.ebi.ac.uk/efo/ -1507699012 factor type flag ISA EFO_0004110 http://www.ebi.ac.uk/efo/ -1507699020 validation flag ISA IAO_0000030 http://purl.obolibrary.org/obo/ 964461301 information entity ISA EFO_0000001 http://www.ebi.ac.uk/efo/ -1507819175 experimental factor START EFO_0000787 http://www.ebi.ac.uk/efo/ -1507812194 animal component ISA EFO_0000786 http://www.ebi.ac.uk/efo/ -1507812195 anatomy basic component ISA EFO_0000635 http://www.ebi.ac.uk/efo/ -1507813312 organism part ISA MaterialEntity http://www.ifomis.org/bfo/1.1/snap# -1334101703 material entity ISA EFO_0000001 http://www.ebi.ac.uk/efo/ -1507819175 experimental factor