2.20 Bioportal mappings to BRENDA tissue / enzyme source (BTO) verunknown Bioportal mappings to Cell type (CL) verunknown Bioportal mappings to Chemical entities of biological interest (CHEBI) verunknown Bioportal mappings to Drosophila gross anatomy (FBbt) ver2011-02-10 Bioportal mappings to Foundational Model of Anatomy (FMA) ver3.1 Bioportal mappings to Gene Ontology (GO) ver1.886 Bioportal mappings to Human disease (DOID) ver Bioportal mappings to International Classification of Diseases (ICD-9) ver9 Bioportal mappings to MGED Ontology (MO) ver1.3.1.1 Bioportal mappings to Malaria Ontology (IDOMAL) ver1.22 Bioportal mappings to Mammalian phenotype (MP) vernull Bioportal mappings to Medical Subject Headings (MSH) ver2011_2010_08_30 Bioportal mappings to Microarray experimental conditions (MO) ver1.3.1.1 Bioportal mappings to Minimal anatomical terminology (MAT) ver1.1 Bioportal mappings to Mosquito gross anatomy (TGMA) verunknown Bioportal mappings to NCBI organismal classification (NCBITaxon) ver1.2 Bioportal mappings to NCI Thesaurus (NCIt) ver11.01e Bioportal mappings to NIFSTD (nif) ver2.2 - December 20, 2010 Bioportal mappings to Ontology for Biomedical Investigations (OBI) ver2010-10-26 Vancouver 2010 release, RC2 Bioportal mappings to Phenotypic quality (PATO) vernull Bioportal mappings to SNOMED Clinical Terms (SNOMEDCT) ver2010_07_31 Bioportal mappings to Teleost Anatomy Ontology (TAO) vernull Bioportal mappings to Teleost anatomy and development (TAO) ver1.158 Bioportal mappings to Units of measurement (UO) vernull Bioportal mappings to Zebrafish anatomy and development (ZFA) verunknown Date: 19th January 2012 Ele Holloway Helen Parkinson James Malone Mappings to Plant structure (PO) Mappings: CRISP Thesaurus Version 2.5.2.0 Mappings: The Jackson Lab Mappings:The Arabidopsis Information Resource (TAIR) Tomasz Adamusiak Dani Welter Natalja Kurbatova experimental factor An experimental factor in Array Express which are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. An experimental factor in Array Express. Concept naming convention is lower case natural naming with spaces, when necessary captials should be used, for example disease factor, HIV, breast carcinoma, Ewing's sarcoma ExperimentalFactor ExperimentalFactor[accessedResource: MO_10][accessDate: 05-04-2011] Helen Parkinson Helen Parkinson James Malone James Malone Jie Zheng MO_10 Tomasz Adamusiak Tomasz Adamusiak true factor_type Dani Welter Factor type permitted in Atlas http://www.ebi.ac.uk/efo/EFO_0004109 true information entity An information entity is an entity that represents information about some other entity. For example, a measurement, a clustered data set. James Malone an information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity http://www.ebi.ac.uk/efo/EFO_0001435 information information content entity true material entity A heart, a human, a fly, a microarray. A material entity is an entity that exists in full during the length of time of its existence, persists through this time while maintaining its identity and has no temporal parts. For example a heart, a human, a fly, a microarray. An independent continuant [snap:IndependentContinuant] that is spatially extended whose identity is independent of that of other entities and can be maintained through time. Note: Material entity [snap:MaterialEntity] subsumes object [snap:Object], fiat object part [snap:FiatObjectPart], and object aggregate [snap:ObjectAggregate], which assume a three level theory of granularity, which is inadequate for some domains, such as biology. James Malone http://www.ebi.ac.uk/efo/EFO_0001434 sample factor true material property A continuant [snap:Continuant] that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. An experimental factor which is a property or characteristic of some other entity. For example, the mouse has the colour white. James Malone SpecificallyDependentContinuant http://www.ebi.ac.uk/efo/EFO_0001443 sample characteristic true process A process is an entity that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity during the time it occurs. An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity. James Malone http://www.ebi.ac.uk/efo/EFO_0001433 true site A site is an entity which consists of a characteristic spatial shape in relation to some arrangement of other material entities. An independent continuant [snap:IndependentContinuant] consisting of a characteristic spatial shape in relation to some arrangement of other continuant [snap:Continuant] entities and of the medium which is enclosed in whole or in part by this characteristic spatial shape. Site [snap:Site] entities are entities that can be occupied by other continuant [snap:Continuant] entities. James Malone http://www.ebi.ac.uk/efo/EFO_0001437 true START EFO_0000001 http://www.ebi.ac.uk/efo/ -1507819175 experimental factor