This server is maintained by andy.jenkinson@ebi.ac.uk.
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| Source | Mapmaster | Description | Capabilities |
|---|---|---|---|
| anopheles_transposon | - | [Anopheles gambiae] Transposons annotated on chromosome coordinates. | features/1.0; stylesheet/1.0 |
| asd_human | - | [ContigView] AltSplice human alternative splicing patterns. | features/1.0; stylesheet/1.0 |
| asd_mouse | - | [ContigView] AltSplice mouse alternative splicing patterns. | features/1.0; stylesheet/1.0 |
| asd_snp_human | - | [ContigView] SNPs on AltSplice human alternative splicing patterns. | features/1.0; stylesheet/1.0 |
| asd_snp_mouse | - | [ContigView] SNPs on AltSplice mouse alternative splicing patterns. | features/1.0; stylesheet/1.0 |
| astd_exon_human_36 | - | ASTD exon features grouped into transcripts, offered on human chromosome co-ordinates. | types/1.0; features/1.0; feature-by-id/1.0; stylesheet/1.0 |
| astd_exon_mouse_m36 | - | ASTD exon features grouped into transcripts, offered on mouse chromosome co-ordinates. | types/1.0; features/1.0; feature-by-id/1.0; stylesheet/1.0 |
| astd_exon_rat_34 | - | ASTD exon features grouped into transcripts, offered on rat chromosome co-ordinates. | types/1.0; features/1.0; feature-by-id/1.0; stylesheet/1.0 |
| astd_snp_human_36 | - | ASTD SNP features, offered on human chromosome co-ordinates. | types/1.0; features/1.0; stylesheet/1.0 |
| astd_snp_mouse_m36 | - | ASTD SNP features, offered on mouse chromosome co-ordinates. | types/1.0; features/1.0; stylesheet/1.0 |
| astd_snp_rat_34 | - | ASTD SNP features, offered on rat chromosome co-ordinates. | types/1.0; features/1.0; stylesheet/1.0 |
| atd_human | - | [ContigView] AltTrans human alternative transcript patterns. | features/1.0; stylesheet/1.0 |
| atd_mouse | - | [ContigView] AltTrans mouse alternative transcript patterns. | features/1.0; stylesheet/1.0 |
| batman_BC | - | DNA methylation landscape for B-cells, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_CD4 | - | DNA methylation landscape for CD4 T-cells, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_CD8 | - | DNA methylation landscape for CD8 T-cells, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_CN | - | DNA methylation landscape for Colon, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_CX | - | DNA methylation landscape for Cervix, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_GM | - | DNA methylation landscape for GM06990, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_LG | - | DNA methylation landscape for Lung, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_LR | - | DNA methylation landscape for Liver, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_PL | - | DNA methylation landscape for Placenta, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_PR | - | DNA methylation landscape for Prostate, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_PS | - | DNA methylation landscape for Pancreas, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_RM | - | DNA methylation landscape for Rectum, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_seq_SP | - | DNA methylation landscape for Sperm, assayed using methyl DNA immunoprecipitation (MeDIP), Illumina Genome Analyzer sequencing and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_SM | - | DNA methylation landscape for Skeletal Muscle, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_SP | - | DNA methylation landscape for Sperm, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_US | - | DNA methylation landscape for Uterus, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| batman_WB | - | DNA methylation landscape for Whole Blood, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). | types/1.0; features/1.0; stylesheet/1.0 |
| chori29_clones_m37 | - | CHORI-29 NOD BAC Library, mapped to the NCBIM37 mouse assembly. The NOD/ShiLtJ mouse BAC library end-sequences have been mapped to the NCBIM37 mouse assembly using SSAHA alignment of the reads. | types/1.0; features/1.0; stylesheet/1.0 |
| cytochip3_36 | http://www.ensembl.org/das/Homo_sapiens.NCBI36.reference | CytoChip version 3 is a BAC based microarray designed for the investigation of genomic copy number imbalance associated with constitutional cytogenetic disorders. Please contact info@cambridgebluegnome.com for further information or with any questions. | types/1.0; features/1.0; feature-by-id/1.0; stylesheet/1.0 |
| eqtl_rat_cis_fat | - | Expression Quantitative Trait Loci (cis) for Rattus norvegicus | types/1.0; features/1.0; stylesheet/1.0 |
| eqtl_rat_cis_kidney | - | Expression Quantitative Trait Loci (cis) for Rattus norvegicus | types/1.0; features/1.0; stylesheet/1.0 |
| eqtl_rat_trans_fat | - | Expression Quantitative Trait Loci (trans) for Rattus norvegicus | types/1.0; features/1.0; stylesheet/1.0 |
| eqtl_rat_trans_kidney | - | Expression Quantitative Trait Loci (trans) for Rattus norvegicus | types/1.0; features/1.0; stylesheet/1.0 |
| gnf_expression | - | Rat Tissue Expression data from the Genomics Institute of the Novartis Research Foundation. | types/1.0; features/1.0; stylesheet/1.0; unknown-segment/1.0 |
| hsaprimiRNA | - | A DAS source that provides access to the annotation data of primary transcripts of human miRNAs | types/1.0; features/1.0 |
| hydragenevar_eQTL_1mb | http://www.ensembl.org/das/Homo_sapiens.NCBI36.reference | Expression Quantitative Trait Loci from the Sanger Institute | types/1.0; features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_bay_0 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_bor_4 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_br_0 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_bur_0 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_c24 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_cvi_0 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_est_1 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_fei_0 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_got_7 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_ler_1 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_lov_5 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_nfa_8 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_rrs_10 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_rrs_7 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_shakhdara | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_tamm_2 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_ts_1 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_tsu_1 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| hydranasc_van_0 | - | Variants from the European Arabidopsis Stock Centre | features/1.0; maxbins/1.0; stylesheet/1.0 |
| mmuprimiRNA | - | A DAS source that provides access to the annotation data of primary transcripts of mouse miRNAs | types/1.0; features/1.0 |
| MS_data_JHU | - | [Anopheles gambiae] MS data from Pandey lab, JHU | features/1.0; stylesheet/1.0 |
| nidb_cnvs_rat | - | Rat Copy Number Variations, supplied by the Netherlands Institute for Developmental Biology. | types/1.0; features/1.0; stylesheet/1.0 |
| nod_clones_m37 | - | DIL NOD BAC Library, mapped to the NCBIM37 mouse assembly. The NOD/MrkTac mouse BAC library end-sequences have been mapped to the NCBIM37 mouse assembly using SSAHA alignment of the reads. | types/1.0; features/1.0; stylesheet/1.0 |
| rnoprimiRNA | - | A DAS source that provides access to the annotation data of primary transcripts of rat miRNAs | types/1.0; features/1.0 |
| rrbs_ag04449 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for AG04449 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_ag04450 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for AG04450 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_ag09309 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for AG09309 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_ag09319 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for AG09319 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_ag10803 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for AG10803 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_cmk | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for CMK cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_fibrobl | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for Fibroblast cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_gm12878 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for GM12878 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_gm12891 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for GM12891 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_gm12892 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for GM12892 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_gm19239 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for GM19239 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_gm19240 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for GM19240 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_h1hesc | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for H1-hESC cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hae | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HAE cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hcf | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HCF cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hcm | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HCM cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hcpe | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HCPE cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hct116 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HCT116 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hee | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HEE cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hek293 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HEK293 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hepg2 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for Hep-G2 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hipe | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HIPE cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hmec | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HMEC cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hnpce | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HNPCE cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hpae | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HPAE cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hrce | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HRCE cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hre | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HRE cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hrpe | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HRPE cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_hsmmt | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for HSMMt cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_imr90 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for IMR-90 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_jurkat | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for Jurkat cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_k562 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for K562 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_mcf7 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for MCF-7 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_melano | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for Melanocyte cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_nb4 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for NB4 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_nha | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for NHA cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_nhbe | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for NHBE cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_nhdfneo | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for NHDF-neo cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_nt2d1 | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for NT2D1 cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_osteobl | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for Osteoblast cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_panislets | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for Pancreatic Islet cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_saec | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for SAEC cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_skmc | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for Skeletal Muscle cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |
| rrbs_sknshra | - | Reduced representation bisulphite sequencing (RRBS) from ENCODE for SKNShra cells (merged replicates). | types/1.0; features/1.0; stylesheet/1.0 |