CHEBI:3745 - clindamycin

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ChEBI Name clindamycin
ChEBI ID CHEBI:3745
Definition A carbohydrate-containing antibiotic that is the semisynthetic derivative of lincomycin, a natural antibiotic.
Stars This entity has been manually annotated by the ChEBI Team.
Secondary ChEBI IDs CHEBI:47331
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Formula C18H33ClN2O5S
Net Charge 0
Average Mass 424.98380
Monoisotopic Mass 424.180
InChI InChI=1S/C18H33ClN2O5S/c1-5-6-10-7-11(21(3)8-10)17(25)20-12(9(2)19)16-14(23)13(22)15(24)18(26-16)27-4/h9-16,18,22-24H,5-8H2,1-4H3,(H,20,25)/t9?,10-,11+,12?,13+,14-,15-,16-,18-/m1/s1
InChIKey KDLRVYVGXIQJDK-NOWPCOIGSA-N
SMILES CCC[C@@H]1C[C@H](N(C)C1)C(=O)NC(C(C)Cl)[C@H]1O[C@H](SC)[C@H](O)[C@@H](O)[C@H]1O
Roles Classification
Chemical Role(s): environmental contaminant
Any minor or unwanted substance introduced into the environment that can have undesired effects.
Biological Role(s): xenobiotic
A xenobiotic (Greek, xenos "foreign"; bios "life") is a compound that is foreign to a living organism. Principal xenobiotics include: drugs, carcinogens and various compounds that have been introduced into the environment by artificial means.
antimicrobial agent
A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
(via carbohydrate-containing antibiotic )
View more via ChEBI Ontology
ChEBI Ontology
Outgoing clindamycin (CHEBI:3745) has functional parent lincomycin (CHEBI:6472)
clindamycin (CHEBI:3745) has role environmental contaminant (CHEBI:78298)
clindamycin (CHEBI:3745) has role xenobiotic (CHEBI:35703)
clindamycin (CHEBI:3745) is a S-glycosyl compound (CHEBI:35275)
clindamycin (CHEBI:3745) is a carbohydrate-containing antibiotic (CHEBI:23007)
clindamycin (CHEBI:3745) is a organochlorine compound (CHEBI:36683)
clindamycin (CHEBI:3745) is a pyrrolidinecarboxamide (CHEBI:46770)
clindamycin (CHEBI:3745) is a semisynthetic derivative (CHEBI:72588)
Incoming clindamycin phosphate (CHEBI:3746) has functional parent clindamycin (CHEBI:3745)
IUPAC Name
methyl 7-chloro-6,7,8-trideoxy-6-({[(2S,4R)-1-methyl-4-propylpyrrolidin-2-yl]carbonyl}amino)-1-thio-D-glycero-α-D-galacto-octopyranoside
Synonyms Sources
7(S)-Chloro-7-deoxylincomycin ChemIDplus
7-CDL ChemIDplus
Cleocin (TN) KEGG DRUG
Clindamycin KEGG COMPOUND
Methyl 7-chloro-6,7,8-trideoxy-6-(1-methyl-trans-4-propyl-L-2-pyrrolidinecarboxamido)-1-thio-L-threo-alpha-D-galacto-octopyranoside ChemIDplus
Database Links Databases
C06914 KEGG COMPOUND
C13684 KEGG COMPOUND
Clindamycin Wikipedia
D00277 KEGG DRUG
D02132 KEGG DRUG
DB01190 DrugBank
HMDB15321 HMDB
View more database links
Registry Numbers Types Sources
18323-44-9 CAS Registry Number KEGG COMPOUND
18323-44-9 CAS Registry Number ChemIDplus
5624049 Reaxys Registry Number Reaxys
Citations Waiting for Citations Types Sources
11691576 PubMed citation CiteXplore
18695329 PubMed citation CiteXplore
24310902 PubMed citation CiteXplore
Last Modified
10 May 2016
General Comment
2014-10-29 Stravs M, Schymanski E, Singer H, Department of Environmental Chemistry, Eawag