CHEBI:17802 - pseudouridine

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ChEBI Name pseudouridine
ChEBI ID CHEBI:17802
Definition A C-glycosyl pyrimidine that consists of uracil having a β-D-ribofuranosyl residue attached at position 5. The C-glycosyl isomer of the nucleoside uridine.
Stars This entity has been manually annotated by the ChEBI Team.
Secondary ChEBI IDs CHEBI:8610, CHEBI:14964, CHEBI:26364
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Formula C9H12N2O6
Net Charge 0
Average Mass 244.20146
Monoisotopic Mass 244.070
InChI InChI=1S/C9H12N2O6/c12-2-4-5(13)6(14)7(17-4)3-1-10-9(16)11-8(3)15/h1,4-7,12-14H,2H2,(H2,10,11,15,16)/t4-,5-,6-,7+/m1/s1
InChIKey PTJWIQPHWPFNBW-GBNDHIKLSA-N
SMILES OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)c1c[nH]c(=O)[nH]c1=O
Metabolite of Species Details
Daphnia magna (NCBI:35525) See: Mixtures of similarly acting compounds in Daphnia magna: From gene to metabolite and beyondTine Vandenbrouck, Oliver A.H. Jones, Nathalie Dom, Julian L. Griffin, Wim De CoenEnvironment International 36 (2010) 254-268
Homo sapiens (NCBI:9606) See: PubMed
Roles Classification
Biological Role(s): fundamental metabolite
Any metabolite produced by all living cells.
View more via ChEBI Ontology
ChEBI Ontology
Outgoing pseudouridine (CHEBI:17802) has role fundamental metabolite (CHEBI:78675)
pseudouridine (CHEBI:17802) is a pseudouridines (CHEBI:26366)
Incoming N1-methylpseudouridine 5'-monophosphate (CHEBI:75078) has functional parent pseudouridine (CHEBI:17802)
N3-methylpseudouridine 5'-monophosphate (CHEBI:74731) has functional parent pseudouridine (CHEBI:17802)
pseudouridine 5'-phosphate (CHEBI:18116) has functional parent pseudouridine (CHEBI:17802)
IUPAC Name
5-(β-D-ribofuranosyl)pyrimidine-2,4(1H,3H)-dione
Synonyms Sources
(1S)-1,4-anhydro-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-D-ribitol ChEBI
5-(β-D-ribofuranosyl)uracil ChEBI
β-Pseudouridine HMDB
p ChEBI
Pseudouridine KEGG COMPOUND
pseudouridine UniProt
Ψ-uridine ChEBI
Database Links Databases
C00001508 KNApSAcK
C02067 KEGG COMPOUND
CPD-497 MetaCyc
HMDB00767 HMDB
Pseudouridine Wikipedia
View more database links
Registry Numbers Types Sources
1445-07-4 CAS Registry Number KEGG COMPOUND
1445-07-4 CAS Registry Number ChemIDplus
32779 Beilstein Registry Number Beilstein
621385 Reaxys Registry Number Reaxys
Citations Waiting for Citations Types Sources
12810910 PubMed citation Europe PMC
13811056 PubMed citation Europe PMC
15199136 PubMed citation Europe PMC
15739475 PubMed citation Europe PMC
16236171 PubMed citation Europe PMC
18620915 PubMed citation Europe PMC
21628430 PubMed citation Europe PMC
21953190 PubMed citation Europe PMC
21960742 PubMed citation Europe PMC
22770225 PubMed citation Europe PMC
Last Modified
23 October 2015