CHEBI:52807 - C5-indocyanine cation

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ChEBI Name C5-indocyanine cation
ChEBI ID CHEBI:52807
Definition The cationic form of a C5 cyanine dye having 1-ethyl-3,3-dimethylindoleinine units at each end.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information
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Formula C29H35N2
Net Charge +1
Average Mass 411.60160
Monoisotopic Mass 411.27948
InChI InChI=1S/C29H35N2/c1-7-30-24-18-14-12-16-22(24)28(3,4)26(30)20-10-9-11-21-27-29(5,6)23-17-13-15-19-25(23)31(27)8-2/h9-21H,7-8H2,1-6H3/q+1
InChIKey KYFRKHUJZPDPDS-UHFFFAOYSA-N
SMILES [H]C(=C([H])C([H])=C1N(CC)c2ccccc2C1(C)C)C([H])=C([H])C1=[N+](CC)c2ccccc2C1(C)C
Roles Classification
Application(s): fluorochrome
A fluorescent dye used to stain biological specimens.
dye

(via cyanine dye )
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ChEBI Ontology
Outgoing C5-indocyanine cation (CHEBI:52807) has role fluorochrome (CHEBI:51217)
C5-indocyanine cation (CHEBI:52807) is a Cy5 dye (CHEBI:37989)
C5-indocyanine cation (CHEBI:52807) is a indolium ion (CHEBI:52840)
Incoming C5-indocyanine (CHEBI:51898) has part C5-indocyanine cation (CHEBI:52807)
IUPAC Name
1-ethyl-2-[5-(1-ethyl-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene)penta-1,3-dien-1-yl]-3,3-dimethyl-3H-indolium
Last Modified
28 July 2009