CHEBI:78720 - tetramethylrhodamine ethyl ester perchlorate

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ChEBI Name tetramethylrhodamine ethyl ester perchlorate
ChEBI ID CHEBI:78720
Definition An organic perchlorate salt that has tetramethylrhodamine ethyl ester(1+) as the cation. It is used as a cell-permeant, cationic, red-orange fluorescent dye that is readily sequestered by active mitochondria.
Stars This entity has been manually annotated by the ChEBI Team.
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Formula C26H27ClN2O7
Net Charge 0
Average Mass 514.95500
Monoisotopic Mass 514.15068
InChI InChI=1S/C26H27N2O3.ClHO4/c1-6-30-26(29)20-10-8-7-9-19(20)25-21-13-11-17(27(2)3)15-23(21)31-24-16-18(28(4)5)12-14-22(24)25;2-1(3,4)5/h7-16H,6H2,1-5H3;(H,2,3,4,5)/q+1;/p-1
InChIKey NBAOBNBFGNQAEJ-UHFFFAOYSA-M
SMILES [O-][Cl](=O)(=O)=O.CCOC(=O)c1ccccc1-c1c2ccc(cc2oc2cc(ccc12)=[N+](C)C)N(C)C
Roles Classification
Application(s): fluorochrome
A fluorescent dye used to stain biological specimens.
reagent
A substance used in a chemical reaction to detect, measure, examine, or produce other substances.
dye

(via xanthene dye )
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ChEBI Ontology
Outgoing tetramethylrhodamine ethyl ester perchlorate (CHEBI:78720) has part tetramethylrhodamine ethyl ester(1+) (CHEBI:78721)
tetramethylrhodamine ethyl ester perchlorate (CHEBI:78720) has role fluorochrome (CHEBI:51217)
tetramethylrhodamine ethyl ester perchlorate (CHEBI:78720) has role reagent (CHEBI:33893)
tetramethylrhodamine ethyl ester perchlorate (CHEBI:78720) is a organic perchlorate salt (CHEBI:52165)
tetramethylrhodamine ethyl ester perchlorate (CHEBI:78720) is a xanthene dye (CHEBI:37929)
Synonym Source
TMRE perchlorate ChEBI
Registry Number Type Source
8180460 Reaxys Registry Number Reaxys
Citations Waiting for Citations Types Sources
16256133 PubMed citation Europe PMC
61256133 PubMed citation Europe PMC
Last Modified
06 June 2014