CHEBI:32096 - rhodomycin D

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ChEBI Name rhodomycin D
ChEBI ID CHEBI:32096
Definition An anthracycline that is aklavinone having a 3-amino-2,3,6-trideoxy-α-L-lyxo-hexopyranosyl residue attached at position 4 via a glycosidic linkage.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information
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Formula C28H31NO11
Net Charge 0
Average Mass 557.54580
Monoisotopic Mass 557.18971
InChI InChI=1S/C28H31NO11/c1-4-28(37)9-14(40-15-8-12(29)22(31)10(2)39-15)17-18(21(28)27(36)38-3)26(35)19-20(25(17)34)24(33)16-11(23(19)32)6-5-7-13(16)30/h5-7,10,12,14-15,21-22,30-31,34-35,37H,4,8-9,29H2,1-3H3/t10-,12-,14-,15-,21-,22+,28+/m0/s1
InChIKey CADJZGPRUYOSGU-QWWLYEKJSA-N
SMILES CC[C@@]1(O)C[C@H](O[C@H]2C[C@H](N)[C@H](O)[C@H](C)O2)c2c(O)c3C(=O)c4c(O)cccc4C(=O)c3c(O)c2[C@H]1C(=O)OC
Roles Classification
Biological Role(s): metabolite
Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites.
(via anthracycline )
antimicrobial agent
A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
(via anthracycline antibiotic )
View more via ChEBI Ontology
ChEBI Ontology
Outgoing rhodomycin D (CHEBI:32096) has functional parent aklavinone (CHEBI:31181)
rhodomycin D (CHEBI:32096) has role metabolite (CHEBI:25212)
rhodomycin D (CHEBI:32096) is a p-quinones (CHEBI:25830)
rhodomycin D (CHEBI:32096) is a aminoglycoside (CHEBI:47779)
rhodomycin D (CHEBI:32096) is a anthracycline antibiotic (CHEBI:49322)
rhodomycin D (CHEBI:32096) is a deoxy hexoside (CHEBI:35315)
rhodomycin D (CHEBI:32096) is a methyl ester (CHEBI:25248)
rhodomycin D (CHEBI:32096) is a monosaccharide derivative (CHEBI:63367)
rhodomycin D (CHEBI:32096) is a tetracenequinones (CHEBI:51286)
rhodomycin D (CHEBI:32096) is conjugate base of rhodomycin D(1+) (CHEBI:77073)
Incoming rhodomycin D(1+) (CHEBI:77073) is conjugate acid of rhodomycin D (CHEBI:32096)
IUPAC Name
methyl (1R,2R,4S)-4-[(3-amino-2,3,6-trideoxy-α-L-lyxo-hexopyranosyl)oxy]-2-ethyl-2,5,7,12-tetrahydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate
Synonyms Sources
1-Hydroxy-10-methoxycarbonyl-13-deoxocarminomycin ChemIDplus
7-O-(3-Amino-2,3,6-trideoxy-alpha-hexopyranosyl)-epsilon-isorhodomycinone ChemIDplus
Rhodomycin D KEGG COMPOUND
rhodomycinone D MetaCyc
Manual Xrefs Databases
C12426 KEGG COMPOUND
CPD-15730 MetaCyc
KR20090092481 Patent
View more database links
Registry Numbers Types Sources
117016-15-6 CAS Registry Number ChemIDplus
4222916 Reaxys Registry Number Reaxys
Citations Waiting for Citations Types Sources
10631513 PubMed citation Europe PMC
1473988 PubMed citation Europe PMC
16545946 PubMed citation Europe PMC
9098063 PubMed citation Europe PMC
Last Modified
06 June 2016