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InChI=1S/CH4O/c1-2/h2H,1H3
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ChEBI
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CHEBI:52720 - CypHer5
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ChEBI Ontology
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ChEBI Name
CypHer5
ChEBI ID
CHEBI:52720
Definition
A C5-cyanine dye having differentially-substituted 2-indolyl units at each end.
Stars
This entity has been manually annotated by the ChEBI Team.
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Formula
C31H36N2O8S2
Net Charge
0
Average Mass
628.75600
Monoisotopic Mass
628.19131
InChI
InChI=1S/C31H36N2O8S2/c1-
30(2)
23-
19-
21(42(36,37)
38)
14-
16-
25(23)
32-
27(30)
11-
7-
5-
8-
12-
28-
31(3,4)
24-
20-
22(43(39,40)
41)
15-
17-
26(24)
33(28)
18-
10-
6-
9-
13-
29(34)
35/h5,7-
8,11-
12,14-
17,19-
20H,6,9-
10,13,18H2,1-
4H3,(H,34,35)
(H,36,37,38)
(H,39,40,41)
InChIKey
VRQVBVFJEIJSIE-UHFFFAOYSA-N
SMILES
[H]C(C=C([H])C1=Nc2ccc(cc2C1(C)C)S(O)(=O)=O)=CC([H])=C1N(CCCCCC(O)=O)c2ccc(cc2C1(C)C)S(O)(=O)=O
Roles Classification
Application
(s):
fluorochrome
A fluorescent dye used to stain biological specimens.
dye
(via
cyanine dye
)
View more via ChEBI Ontology
ChEBI Ontology
Outgoing
CypHer5 (
CHEBI:52720
)
has role
fluorochrome (
CHEBI:51217
)
CypHer5 (
CHEBI:52720
)
is a
cyanine dye (
CHEBI:37960
)
IUPAC Name
6-
{2-
[5-
(3,3-
dimethyl-
5-
sulfo-
3
H
-
indol-
2-
yl)penta-
2,4-
dien-
1-
ylidene]-
3,3-
dimethyl-
5-
sulfo-
2,3-
dihydro-
1
H
-
indol-
1-
yl}hexanoic acid
Last Modified
09 July 2009