 |
|
EBI DbfetchID Z19108; SV 1; linear; genomic DNA; STD; PRO; 5639 BP. XX AC Z19108; XX DT 01-MAR-1993 (Rel. 35, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 12) XX DE Spiroplasma citri dnaA, dnaN, gyrA and gyrB genes XX KW DNA gyrase subunit A; DNA gyrase subunit B; dnaA gene; dnaN gene; KW gyrA gene; gyrB gene. XX OS Spiroplasma citri OC Bacteria; Tenericutes; Mollicutes; Entomoplasmatales; Spiroplasmataceae; OC Spiroplasma. XX RN [1] RP 1-5639 RX DOI; 10.1007/BF01570187 RX PUBMED; 7764984. RA Ye F., Renaudin J., Bove J.M., Laigret F.; RT "Cloning and sequencing of the replication origin (oriC) of the Spiroplasma RT citri chromosome and construction of autonomously replicating artificial RT plasmids"; RL Curr. Microbiol. 29(1):23-29(1994). XX RN [2] RP 1-5639 RA Laigret F.; RT ; RL Submitted (11-DEC-1992) to the EMBL/GenBank/DDBJ databases. RL Laigret F., Laboratoire de biologie cellulaire et moleculaire, INRA, RL Villenave d'Ornon, France, 33883 XX FH Key Location/Qualifiers FH FT source 1..5639 FT /organism="Spiroplasma citri" FT /strain="R8A2HP" FT /mol_type="genomic DNA" FT /db_xref="taxon:2133" FT protein_bind 26..34 FT /function="bind DnaA protein" FT /bound_moiety="DnaA protein" FT protein_bind complement(69..77) FT /function="binds DnaA protein" FT /bound_moiety="DnaA protein" FT protein_bind complement(134..142) FT /function="binds DnaA protein" FT /bound_moiety="DnaA protein" FT protein_bind 180..188 FT /function="binds dnaA protein" FT /bound_moiety="dnaA protein" FT RBS 224..230 FT /gene="dnaA" FT CDS 237..1589 FT /transl_table=4 FT /gene="dnaA" FT /standard_name="DnaA" FT /product="DnaA protein" FT /function="replication initiation" FT /db_xref="GOA:P34028" FT /db_xref="HSSP:1L8Q" FT /db_xref="InterPro:IPR013317" FT /db_xref="UniProtKB/Swiss-Prot:P34028" FT /citation=[1] FT /protein_id="CAA79521.1" FT /translation="MNTKELWIEVKEILSRDESVSPEIYNYYISDTNLYTVSDNNCLIT FT TKSEIAIGVFEAGLNEKIKNILKKLTGIQYNISFELEKNINKQASVISKIDTLTENNNL FT AYYENYTFENFVRGDSNHEAMQAALAVALDLGKKWNPLFIYGDSGLGKTHLLHAIENKV FT NEIYKTNNRVKYLKADEFGKIAMDILNQGHEIIEAFKTSYDIYDCLLIDDIQLLAKRNK FT TNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGLSIGLDSPDFETALK FT ILEQKLKHQNNLGLFSEESLEFIALNFNSDVRKLEGAIKRLLFLAVMNKKPNEIITLAD FT VEKAFKNAPLQNNEKITPKKIKQIVADSYNITIKAMMSKSRVSNVMQARQLAMYFCRTL FT LDEPFTRIGTEFGGKDHTTVMNSVKKVEAHISTNKEFKHLVNAIRRKIEGR" FT protein_bind 1597..1605 FT /bound_moiety="dnaA protein" FT protein_bind 1650..1658 FT /bound_moiety="dnaA protein" FT protein_bind 1659..1667 FT /bound_moiety="dnaA protein" FT RBS 1744..1749 FT /gene="dnaN" FT CDS 1758..2849 FT /transl_table=4 FT /gene="dnaN" FT /standard_name="dnaN" FT /product="DnaN protein" FT /function="DNA polymerase III holoenzyme beta subunit" FT /db_xref="GOA:P34029" FT /db_xref="InterPro:IPR001001" FT /db_xref="UniProtKB/Swiss-Prot:P34029" FT /citation=[1] FT /protein_id="CAA79522.1" FT /translation="MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFT FT TSDGDTSIKSEIMGNDLNITRIGSVLIKNKFIVEVIRKIEDEFITLEVVEGNLIKIKAN FT NFDSVLNTLNSADYPHLSFETEGKEIIFTSTVLKEIISQTSFAIGEKEKRIVFNGLNIK FT TDQNNKELIITATDSFRLSCKKIDYSNNYNFDVIIPGKFINEIGRLISENDQVSELLLI FT IINCKQKIIEGKYPDTSKVIRTSFNTSLTINNRAIIKIIERRSVLSNETMTTIVTLKIK FT EQKVLVTSFTQEIGNTEEEIRDFKVEGTDQIIAFNSKYILDALKAFKTKEITIKMIDER FT KPLIITANDDQTLQQLVLPIRSY" FT RBS 3008..3014 FT /gene="gyrB" FT CDS 3023..4945 FT /transl_table=4 FT /gene="gyrB" FT /product="DNA gyrase subunit B" FT /function="topoisomerase" FT /db_xref="GOA:P34031" FT /db_xref="HSSP:1AJ6" FT /db_xref="InterPro:IPR006171" FT /db_xref="UniProtKB/Swiss-Prot:P34031" FT /citation=[1] FT /protein_id="CAA79523.1" FT /translation="MGDNYNSESIQILEGLEAIRKRPGMYIGATNARGLHHLVWEIVDN FT SIDEVLANFANKIKIILNKDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFD FT SNTYKISGGLHGVGASVVNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTSET FT GTTVTFLPDEKIFKETTIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFN FT NGIKDYVLELNKTIGTPLNDVFYVEGIEDNIVVEFGLQYNDNYSENIFSFCNNINTHEG FT GTHEEGARLAIVREINNYFKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQ FT TNQKLLNSEVKKIVSNIVGKGLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRR FT KIVMDSFSLPGKLSDCETKDAKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNV FT EKAKQIKIFENNEINSIITALGAGIKDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTF FT FYRYMKDLIENGNIYIAQPPLYKVENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYK FT GLGEMNPEQLWETTMDPERRLLLKVSVNNAFEANLICNELMGENVEPRKKFIRENAKYV FT KNLDV" FT RBS 4945..4953 FT /gene="gyrA" FT CDS 4958..>5639 FT /transl_table=4 FT /gene="gyrA" FT /product="DNA gyrase subunit A" FT /function="topoisomerase" FT /db_xref="GOA:P34030" FT /db_xref="HSSP:1AB4" FT /db_xref="InterPro:IPR013758" FT /db_xref="UniProtKB/Swiss-Prot:P34030" FT /citation=[1] FT /protein_id="CAA79524.1" FT /translation="MMKSENDGYDYDGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVR FT DGLKPVHRRIIYAMWDLKMTYEKQHKKSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFS FT YRYPLIDGHGNFGSMDGDPPAAMRYTEAKMSKIAGEIIKDIEKETTIFIDNYDGSEEEP FT TFLPGYFPNLLVNGASGIAVGMATNIPPHNLNEVIDGVIAVTKNPEITTVELMKIIKGP FT DFPTG" XX SQ Sequence 5639 BP; 2334 A; 604 C; 858 G; 1843 T; 0 other; tttgcttatt actgaaattt tattactttc cacaataaaa aatgatttac accataaaat 60 gttaataatg tggaaaacaa taaaaatatt caataaaaac aatgctttta aagaaaatat 120 aaaaaatatt taatgtggaa aaatattaat ttttattaat tttactcatt ttttagtact 180 tttccacatc ttttatttat aattaataac gataaaaact attggagatg aaattaatga 240 acacaaaaga attatgaatt gaagttaaag aaatattatc tcgtgatgaa tcagtttccc 300 cagaaattta taactactat attagtgaca caaacttata tactgtatct gataataact 360 gcttaattac aacaaaatca gaaattgcaa ttggtgtttt tgaagcagga ttaaatgaaa 420 aaattaaaaa tatcttaaaa aaactaactg gaatccaata taatatttca tttgaattag 480 aaaaaaatat caataagcaa gcatctgtaa ttagtaaaat tgacacatta acagaaaaca 540 ataaccttgc ttactatgaa aattatactt ttgaaaattt tgttcgtggt gattctaatc 600 acgaagcaat gcaagcagct ttagcagttg ctttagatct tggaaaaaaa tgaaatccat 660 tattcatata tggagactct ggactaggaa aaacacatct attacatgca attgaaaata 720 aggtaaatga aatttataaa acaaataacc gagtaaaata tttaaaagct gatgagtttg 780 gaaaaattgc tatggatatt ttaaaccaag gccatgaaat tattgaagct tttaaaacat 840 cttatgacat ttacgattgt ttattaattg atgatataca attattagca aaacgaaata 900 aaacaaatga attatttttt catattttta actcatatat tgaaaaaaat aaacaaattg 960 taattacttc tgataaatat cctgatgatc taggcggttt tgaagctaga attatttctc 1020 gtttttcata tggtttaagt attggcttag attcaccaga ttttgaaaca gcacttaaaa 1080 tattagaaca aaaactaaaa catcaaaata acttaggatt attttcagaa gaatcactag 1140 aatttattgc tttaaatttt aacagtgatg ttagaaagtt agaaggagca attaaacgat 1200 tattattttt agctgttatg aacaaaaaac caaatgaaat tattacatta gctgatgttg 1260 aaaaggcatt taaaaatgcc cccctgcaaa ataatgaaaa aattacccct aaaaaaatta 1320 aacaaattgt tgctgacagt tacaatatta ctatcaaagc aatgatgagt aaatcacgag 1380 ttagtaatgt tatgcaagca cgacaattag caatgtattt ttgtagaaca ttactagatg 1440 aaccatttac aaggattgga acagagttcg gtggcaaaga ccacacaact gtgatgaata 1500 gtgttaaaaa agttgaagca cacattagta caaacaaaga atttaaacat ttagtaaatg 1560 caattcgtag aaaaattgaa ggaagatagc acattatttt ccacgattgt tttttaataa 1620 aaaataatat tattcaaaac tttatcaagt tttccacatt ttctacaata taatactaat 1680 aaataaaaaa caatatttaa caatggtata taattattta tatattacag aatatactaa 1740 agtaaggagt aaaaaaaatg attgtaaaca ttaaaagaga taagatatta gatgaattat 1800 tgaaagtaag tcggataatt tctcaaaaga ctttaattcc ttcattattg ggaattttaa 1860 ttgaagttaa aaaagacaaa attactttta ctacttctga tggtgataca tcaattaaat 1920 cagaaattat gggcaatgat ttaaacatta ctcgaattgg aagtgtctta attaaaaata 1980 aatttattgt tgaagttatt cgtaaaattg aagatgaatt tattacatta gaagtagttg 2040 agggcaattt aattaaaatt aaagcaaata attttgattc agttttaaat acattaaact 2100 cagcagatta tccacattta tcatttgaga cagagggtaa agaaataatt tttacaagta 2160 cagtattaaa agaaattatt tcacaaacaa gttttgcaat tggagaaaaa gaaaagagaa 2220 tagtttttaa tggtttaaat attaaaacag atcaaaataa taaagaatta ataattactg 2280 caactgattc atttcgatta tcatgtaaaa agattgacta tagtaataat tataattttg 2340 atgttattat tcctggaaaa tttattaatg aaattgggcg tttaatttca gaaaatgatc 2400 aagttagcga gttattatta ataatcatta attgcaaaca aaaaattatt gaaggaaaat 2460 atcctgatac aagtaaagtt attcgaactt cctttaatac ttcattaaca ataaataatc 2520 gtgcaataat taaaattatt gagcgacgta gtgttttatc aaatgagacg atgacaacaa 2580 ttgttacatt aaaaataaaa gaacaaaaag ttttagttac ttcatttaca caagaaattg 2640 gtaacacgga agaagaaatt agagacttta aagttgaagg aacagaccaa ataattgctt 2700 ttaattcaaa atatattttg gatgctttaa aagcctttaa aacaaaagaa attacaatta 2760 aaatgattga tgaaagaaaa ccattaatta ttactgctaa tgatgatcaa acattacaac 2820 aattagtttt accaatacgg tcatattaaa aactcattac tgagtttttt tattttataa 2880 cttttttata gggttaaatt agacactaaa aatataaaaa tattttttaa aggaagaata 2940 tttaaaaata tatttgataa tttagcccta aattaggtaa taatggtaaa ataaaagaaa 3000 gcggaaatgg agagaattat ttatgggtga taattataat tcagaatcaa ttcaaatttt 3060 agaaggttta gaagcaattc gaaaacgacc agggatgtat attggtgcga caaatgcaag 3120 aggtttacat catttagttt gagaaattgt tgataactca attgatgaag ttttagctaa 3180 ttttgctaat aaaattaaaa ttattcttaa taaggatgaa tcaattacag ttattgataa 3240 tggacgtgga attccaattg aaattcaccc aaaaacaaaa gtttcaacat tagaaactgt 3300 ttttactatt ttacatgcag gaggaaaatt tgattcaaat acatataaaa tttctggagg 3360 tttacatggt gtaggagcta gtgttgttaa tgctttaagt aaatatttaa aagttgaagt 3420 tagaaaaaat aataaaaaat atgtaatgga atttcataat ggtggtcaaa ttttgacacc 3480 aattaaagaa gttggttcaa cttcagaaac tggaacaaca gtaacttttt taccagatga 3540 aaagattttt aaagaaacaa caatttttag tttttcaaca attcaaaatc gaattaaaca 3600 attagttttt ttaaataaag gcttagaaat atcattagtt gatttacgag aagaagatga 3660 agaaaaaact gttctttatc aatttaataa tggaattaaa gattatgttt tagaactaaa 3720 taaaacaatt gggacaccat taaacgatgt tttttatgtg gaaggaatag aagataatat 3780 tgttgttgaa tttggtttgc aatataatga taattattca gaaaatattt tttctttttg 3840 taataacatt aatacccatg aaggtggaac tcacgaagaa ggtgctagat tagccattgt 3900 tcgtgaaata aataattatt ttaaaaatca aattaataaa aataataaag gtaacgaaga 3960 taaatttact tgagatgata ttaaagaagg aatgacaata ataatttcta ttcgtcatcc 4020 tgaaccacaa tatgaaggtc aaactaacca aaaattatta aatagtgaag ttaaaaaaat 4080 tgtttccaat attgttggaa aaggattaag tagttatttg ttagaaaatc cagaagatgc 4140 aaaaaaaatt attgaaaaaa taagtttatc gttaaaagca acaattgttg cacagcgtgc 4200 aaaagaaata acacgtcgta agatagttat ggatagtttt tcattaccag gtaaattatc 4260 agattgtgaa acaaaagatg ctaagatagc tgaactttat attgtcgaag gagattctgc 4320 tggtggaagt gctaaatcgg gccgaaatcg aaaatttcaa gcaattttac cgttacgagg 4380 aaaaatttta aatgtggaaa aagcaaaaca aataaaaata tttgaaaata atgaaattaa 4440 ttcaattatt accgcattag gagcaggtat taaagataat tttaatgata aaaaattacg 4500 ttatcaaaag gtaatcatta tgactgatgc tgatgttgat ggcgcacata tacgaatttt 4560 actattaaca tttttttatc gttatatgaa agatttaatt gaaaatggca atatttatat 4620 tgctcaacca ccattatata aagtagaaaa tagtaatcag attcgatatg tttatagtga 4680 taatgaatta gaactttata aagaagaatt attaaaacaa aataaaaatt atacaattca 4740 acgttataaa ggtttaggag aaatgaatcc agaacaatta tgagaaacaa caatggatcc 4800 agaacggcgt ttattactga aagtttctgt taataatgca tttgaagcaa atttaatttg 4860 taatgaatta atgggtgaaa atgttgaacc acggaaaaaa tttattcgtg aaaatgcaaa 4920 atatgttaaa aatttagatg tctagaagag aggtataatg atgaaatcag aaaatgatgg 4980 atatgattat gatggtaaaa ttcgtgatat tgatattgct gatgaaatga aaaatggttt 5040 tttagattat gcaatgtcag ttattgtttc acgtgcaatt cctgatgttc gtgatggatt 5100 aaaaccagtt catcgacgca ttatttatgc aatgtgagat ttaaaaatga cttacgaaaa 5160 acaacacaag aaatcagcac gaattgttgg tgaagtaatt gggaaatatc atccccatgg 5220 tgatactgct gtttatgaag caatggttcg gatggcacaa gatttttctt atcgttatcc 5280 tttaattgat ggtcatggaa attttggttc aatggatggt gaccctccag cggcaatgcg 5340 atacacggaa gcaaaaatga gtaaaattgc tggtgaaata atcaaagata ttgaaaaaga 5400 aacaacaatt tttattgata attatgatgg tagtgaagaa gaaccgactt ttttaccagg 5460 atattttcca aatttattag ttaatggtgc tagtggaatt gctgttggaa tggcaactaa 5520 tattccaccc cataatttga atgaagtaat tgatggagtt attgcggtaa caaaaaatcc 5580 tgaaataacg accgttgaat taatgaaaat tattaaagga cctgattttc caactgggg 5639 // |
|