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EBI DbfetchID Z17278; SV 1; linear; genomic DNA; STD; PRO; 2948 BP. XX AC Z17278; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 22) XX DE S.enterica cld gene for O-antigen chain length determinant XX KW chain length determinant; UDP-D-glucose dehydrogenase; ugd gene; wzz gene. XX OS Salmonella enterica OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; OC Enterobacteriaceae; Salmonella. XX RN [1] RP 1-2948 RX DOI; 10.1111/j.1365-2958.1993.tb01163.x RX PUBMED; 7682279. RA Bastin D.A., Stevenson G., Brown P.K., Haase A., Reeves P.R.; RT "Repeat unit polysaccharides of bacteria: a model for polymerization RT resembling that of ribosomes and fatty acid synthetase, with a novel RT mechanism for determining chain length"; RL Mol. Microbiol. 7(5):725-734(1993). XX RN [2] RP 1-2948 RA Bastin D.A.; RT ; RL Submitted (13-OCT-1992) to the EMBL/GenBank/DDBJ databases. RL David A Bastin Mr, Microbiology, University of Sydney, Maze, Crescent, RL Sydney, NSW, 2006, Australia XX CC position 1-291 overlaps with 1117-1407 of X15651, CC position 2865-2948 overlaps with the reverse complement of 7357-7439 of CC X13464 XX FH Key Location/Qualifiers FH FT source 1..2948 FT /organism="Salmonella enterica" FT /strain="group B, serovar typhimurium, LT2" FT /mol_type="genomic DNA" FT /db_xref="taxon:28901" FT CDS <1..291 FT /codon_start=1 FT /transl_table=11 FT /gene="gnd" FT /product="6-phosphogluconate dehydrogenase" FT /db_xref="GOA:P97130" FT /db_xref="HSSP:2PGD" FT /db_xref="InterPro:IPR013328" FT /db_xref="UniProtKB/TrEMBL:P97130" FT /protein_id="CAA78944.1" FT /translation="KITDAYAENADIANLLLAPYFKKIADEYQQALRDVVAYAVQNGIP FT VPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRTDKEGIFHTEWLE" FT CDS 527..1693 FT /transl_table=11 FT /gene="ugd" FT /product="putative UDP-D-glucose dehydrogenase" FT /db_xref="GOA:Q04873" FT /db_xref="HSSP:1DLJ" FT /db_xref="InterPro:IPR001732" FT /db_xref="UniProtKB/Swiss-Prot:Q04873" FT /protein_id="CAA78945.1" FT /translation="MKITISGTGYVGLSNGLLIAQHHDVVALDIVPSRVELLNDRISPI FT VDKEIQQFLKEDNIRFRATLDKFDAYQNADYVIIATPTDYDPKTNYFNTSSVESVMQDV FT ISINPAAVMIIKSTVPVGFTAAMRQKFATENIIFSPEFLREGKALYDNLYPSRIVIGEQ FT SERAREFAALLQEGAIKQEIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAETLG FT LNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNIISAIVEANR FT TRKDFIADAILARKPKVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVME FT EDTFFNSRLERDLHCFKQQADVIISNRMAAELLDVAEKVYTRDLFGSD" FT CDS 1836..2819 FT /transl_table=11 FT /gene="wzz" FT /product="chain length determinant" FT /db_xref="GOA:Q04866" FT /db_xref="InterPro:IPR003856" FT /db_xref="PDB:3B8P" FT /db_xref="UniProtKB/Swiss-Prot:Q04866" FT /protein_id="CAA78946.1" FT /translation="MTVDSNTSSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILLA FT VGYLMIAKEKWTSTAIITQPDAAQVATYTNALNVLYGGNAPKISEVQANFISRFSSAFS FT ALSEVLDNQKEREKLTIEQSVKGQALPLSVSYVSTTAEGAQRRLAEYIQQVDEEVAKEL FT EVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQQTQD FT VTQDTMFLLGSDALKSMIQNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHVYRYVM FT KPTLPVRRDSPKTAITLVLAVLLGGMIGAGIVLGRNALRSYKPKAL" FT stem_loop 309..331 FT /note="put. gnd transcriptional termination signal" FT stem_loop 2868..2893 FT /note="put. cld/hisIE bidirectional transcriptional FT termination signal" FT CDS complement(2899..>2948) FT /codon_start=3 FT /transl_table=11 FT /gene="hisIE" FT /product="phosphoribosyl-AMP cyclohydrolase and FT phosphoribosyl-ATP pyrophosphohydrolase bifunctional FT enzyme" FT /db_xref="GOA:Q798W3" FT /db_xref="UniProtKB/TrEMBL:Q798W3" FT /protein_id="CAA78947.1" FT /translation="LNLTTVIDNLRKRHQ" XX SQ Sequence 2948 BP; 790 A; 624 C; 714 G; 820 T; 0 other; aagatcaccg atgcttacgc agaaaacgcc gatatcgcta acttgctgtt agcgccttac 60 ttcaagaaaa ttgctgatga gtaccagcag gcgctgcgcg atgtcgtggc ttacgcggtg 120 cagaacggca ttccggtgcc gacattctct gcggcagtgg cctactatga cagctatcgc 180 gccgcagtac tgccagctaa cttaattcag gcgcagcgtg actactttgg tgcgcacacc 240 tataaacgta ctgataaaga aggcattttc cataccgaat ggttggaata atttctgcaa 300 aaatgtttaa gcccggttta ataccgggct tttttttatc tctattctta ttgatttatc 360 gcttttgctt aatattaact taataatctg tgtttatcgt aatgaagata atctgaattg 420 ttttcgtctg cttgcacttt atatactcag gcgttaaaac tttaatatct tatcaggatg 480 cgaaatacat catgattcat aattaagtta attctgagag cgaataatga aaatcacgat 540 atccgggacg ggttatgttg gcttgtctaa tggtttgctt attgcacaac atcatgatgt 600 ggtggcgtta gacattgttc cttcccgtgt tgaactgtta aatgatcgga tatctccgat 660 tgttgataaa gaaattcagc aatttttaaa ggaagataac atcagattca gggcaacgct 720 ggataagttt gatgcgtacc agaatgcaga ttacgtcatc attgctacgc ctacggatta 780 cgatcccaaa actaactatt ttaatacgtc cagtgtggaa tcggtcatgc aggatgtgat 840 cagcatcaac cccgcagcag tgatgattat taagtctacg gtgccggttg gcttcacggc 900 ggcaatgcgt cagaagtttg cgacagaaaa tatcattttc tctccggagt ttttacgtga 960 aggtaaagcc ctttacgata acctttatcc ctcccgtatc gtgattgggg aacagtctga 1020 gcgcgccaga gaatttgccg cattactcca ggaaggcgct attaaacagg agattccaac 1080 gctgtttacg gactccactg aggcggaagc cattaaactt ttcgccaata cttatctcgc 1140 tatgcgagtc gcttatttta atgaattaga cagctatgct gaaacgttag gattaaatac 1200 ccgacaaatt attgaagggg tgtgcctcga cccgcgtatt ggcaatcatt ataataatcc 1260 ctcttttggt tatggcggat attgtttgcc aaaagatacc aaacagttgc tggccaatta 1320 tcagtcggtg cctaataata ttatctccgc tatcgttgaa gcaaaccgta cgcgtaaaga 1380 ttttattgcc gacgctatcc tcgccagaaa gcctaaagtg gtgggcattt atcgcctgat 1440 tatgaagagt ggctccgata acttccgcgc ctcatcgatt caggggatta tgaagcgcat 1500 taaagcgaaa ggcgtagagg tcatcatcta tgagccggta atggaagaag atactttctt 1560 taactcacgt cttgaacgtg atttgcactg ctttaaacag caggcggatg tcattatttc 1620 caacaggatg gcggcagagc ttttggatgt cgctgaaaaa gtgtataccc gcgatctttt 1680 cggtagtgat taataaggca atcggggctg atgagtcccg atgatttatt gaccaaatgg 1740 aaataatgtc tgatttttat cattaatcct atggcatata tttgctttat ggctacactg 1800 tctccagctt catccttttt ttagttaggg tatctatgac agtggatagt aatacgtctt 1860 ccgggcgtgg gaacgatccg gaacagattg atttgattga gttattgcta cagttatggc 1920 gtgggaagat gaccattatt gtagccgtta ttatcgccat tttgctggct gtaggctacc 1980 tgatgatagc caaagaaaaa tggacatcca cggcgattat tacccaacct gatgccgcgc 2040 aggttgccac ctataccaac gcgctcaacg tcttgtatgg tgggaatgcc cccaaaatct 2100 ctgaagtgca ggcgaatttt ataagccgct ttagctctgc gttttccgca ttatcggaag 2160 tgctggataa tcagaaagag cgggaaaagc ttaccattga acagtcggta aaagggcagg 2220 cgctgccact ctcggtttct tatgtgagta ctaccgctga aggggcgcag cgtcggctgg 2280 cggaatatat ccaacaggtg gatgaagagg tcgctaagga actggaagtt gacctgaaag 2340 ataacatcac gctgcaaacc aaaacgttgc aggagtccct tgagacgcag gaagttgtgg 2400 cgcaggagca aaaagatctg cgtattaagc aaatcgaaga agcgttgcgc tatgcggatg 2460 aggccaaaat cacgcagccg cagattcagc aaacccagga tgttacccag gacacgatgt 2520 tcctgttggg gagcgatgcg ctaaaatcga tgatacagaa cgaagcgacg cgtccactgg 2580 tcttttctcc ggcctattac cagacgaagc agacactgct ggacattaaa aatctgaaag 2640 tgactgccga tacggtgcac gtctatcgtt atgtgatgaa gccgacgctg ccggtccgtc 2700 gcgatagccc gaaaacagcc attacccttg tgctggctgt attgctgggt gggatgatcg 2760 gtgccgggat tgtgctggga cgcaatgcgc tacgtagcta taagccaaaa gccttgtaag 2820 cttctttgcc ggatggtggt cggctacgac aggtaaaatt tctcattaaa aaacgggcat 2880 tgcccggttt ttttacgctt attgatgacg cttacgaaga ttgtcgatca cggtggtgag 2940 gttgagat 2948 // |
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