 |
|
EBI DbfetchID Y16849; SV 2; linear; genomic DNA; STD; PRO; 4385 BP. XX AC Y16849; XX DT 17-MAR-1998 (Rel. 55, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Thermobacillus xylanilyticus xynA and abfA genes and ORF1, strain D3 XX KW AbjA gene; alpha-L-arabinofuranosidase; endo-1,4-beta-xylanase; xynA gene. XX OS Thermobacillus xylanilyticus OC Bacteria; Firmicutes; Bacillales; Paenibacillaceae; Thermobacillus. XX RN [1] RX DOI; 10.1016/S0167-4838(99)00151-X RX PUBMED; 10446364. RA Connerton I.F., Cummings N.J., Harris G.W., Debeire P., Breton C.; RT "A single domain thermophilic xylanase can bind insoluble xylan: evidence RT for surface aromatic clusters"; RL Biochim. Biophys. Acta 1433(1-2):110-121(1999). XX RN [2] RC Revised by [4] RA Connerton I.F.; RT ; RL Submitted (13-MAR-1998) to the EMBL/GenBank/DDBJ databases. RL I.F. Connerton, Inst of Food Research, Dept. Of Food Macromolecular RL Science, Reading Laboratory Earley Gate, Whiteknights Road, Reading RG6 RL 6BZ, UK XX RN [3] RX DOI; 10.1128/AEM.66.4.1734-1736.2000 RX PUBMED; 10742272. RA Debeche T., Cummings N., Connerton I., Debeire P., O'Donohue M.J.; RT "Genetic and biochemical characterization of a highly thermostable RT alpha-L-arabinofuranosidase from Thermobacillus xylanilyticus"; RL Appl. Environ. Microbiol. 66(4):1734-1736(2000). XX RN [4] RP 1-4385 RA Connerton I.F.; RT ; RL Submitted (30-AUG-2000) to the EMBL/GenBank/DDBJ databases. RL I.F. Connerton, Inst of Food Research, Dept. Of Food Macromolecular RL Science, Reading Laboratory Earley Gate, Whiteknights Road, Reading RG6 RL 6BZ, UK XX FH Key Location/Qualifiers FH FT source 1..4385 FT /organism="Thermobacillus xylanilyticus" FT /strain="D3" FT /mol_type="genomic DNA" FT /clone="P4" FT /db_xref="taxon:76633" FT CDS 388..1491 FT /transl_table=11 FT /gene="XynA" FT /product="endo-1,4-beta-xylanase" FT /EC_number="3.2.1.8" FT /db_xref="GOA:O69261" FT /db_xref="HSSP:1HIZ" FT /db_xref="InterPro:IPR001000" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/TrEMBL:O69261" FT /protein_id="CAA76420.1" FT /translation="MGNPAVCDAREPGFADVAVYLLSHNNQRRCTRIWPNSIWWEVFKD FT DFDIGAAVTSRTVDSAADLLRAQYNSITAENEMNPINTQPSEGVFTFEQADKIADFAAK FT HGKKLRGHTLVWHNQTPDWFFEAPGGGPAGKETLLRRMRDHIHAVAGRYKGRTYCWDVV FT NEAVADEGEQWLRASKWHDMVGPEFIVRAFEYAHEADPDALLFYNDYNECNPAKRDKII FT RLVKWLKEQGAPIHGIGMQGHYNLASPSIAEVREAIEKYAELGLVIHVTELDMSVYAWD FT DRRTDLLEPTAEMVERQAELYEQLFSLYREYRDVIRSVTFWGAADDYAWLSYFPVRGRR FT NWPLLFDAQHRPKEAFRRVVRTAGAEA" FT misc_feature 1589..2179 FT /note="putative araC-like transcriptional regulator" FT CDS 2556..4046 FT /transl_table=11 FT /gene="AbjA" FT /product="alpha-L-arabinofuranosidase" FT /EC_number="3.2.1.55" FT /db_xref="GOA:O69262" FT /db_xref="InterPro:IPR010720" FT /db_xref="InterPro:IPR017853" FT /db_xref="PDB:2VRK" FT /db_xref="PDB:2VRQ" FT /db_xref="UniProtKB/TrEMBL:O69262" FT /protein_id="CAA76421.2" FT /translation="MNVASRVVVNADRVKGTINRNIYGHFSEHLGRCIYEGLWVGEDSP FT IPNTNGIRNDVLEALKQMKIPVLRWPGGCFADEYHWKDGVGPREKRKRMVNTHWGGVIE FT NNHFGTHEFMMLCELLGCEPYISGNVGSGTVQEMSEWVEYITFDGESPMANWRRENGRE FT KPWRIKYWGVGNENWGCGGNMRAEYYADLYRQFQTYLRNYGDNKLHKIACGANTADYHW FT TEVLMKQAAPFMHGLSLHYYTVPGPWEKKGPATGFTTDEWWVTLKKALFMDRLVTKHSA FT IMDVYDPDKRIDLIVDEWGTWYDVEPGTNPGFLYQQNSIRDALVAGATLHIFHRHCDRV FT RMANIAQLVNVLQSVILTEGERMLLTPTYHVFNMFKVHQDAELLDTWESVERTGPEGEL FT PKVSVSASRAADGKIHISLCNLDFETGASVDIELRGLNGGVSATGTTLTSGRIDGHNTF FT DEPERVKPAPFRDFKLEGGHLNASLPPMSVTVLELTAG" XX SQ Sequence 4385 BP; 895 A; 1248 C; 1436 G; 806 T; 0 other; aagcttatga cgccattccg gatcttgagc acgaaggcca cgccggacac cacgccgatg 60 tgctgaacgc gatccggacc ggggggaagc cgctgatcgg cggcgaggac ggacgggggt 120 cgttcgtgca caacaccgcc gtctacaaag ttggtgtgac ggcggcaggt ggtccggttg 180 tcgttctgtg ccggaagaac cgcctctaca cccgagaagg aattctggcc cgggcggtga 240 agttttacga gaagaaacgc tcggtcgaag gttttgcgcc atccggcgac attacgaccg 300 gcagcgatta ccgataacgg gtgccgcggc atgccgaaga acaacggtat gccgcggcca 360 gtcctaccct catgaaggtt gagtcgtatg gggaacccgg ccgtatgcga cgcccgggag 420 cccgggtttg cggatgtggc tgtgtatctc ctatcacaca acaatcagcg gaggtgcacc 480 cggatatggc cgaactcaat ctggtgggaa gttttcaagg acgacttcga catcggcgcg 540 gcggtgacgt cccggacggt ggacagcgcg gcggatctgc tcagggcgca gtacaacagc 600 atcacggcgg agaacgagat gaatcccatt aatacgcagc cgtctgaagg cgttttcacc 660 ttcgagcagg cggacaagat tgccgatttc gccgcgaagc acggcaagaa gctgcgcgga 720 cacacgctcg tctggcacaa ccagacgccg gactggttct tcgaagcgcc cggcggcggt 780 cccgccggca aggagacgct gctccggcgc atgcgcgacc acatccatgc ggtggcgggc 840 cggtacaaag ggcggaccta ctgttgggat gtcgtgaacg aagcggtcgc cgacgaaggc 900 gaacagtggc tgcgggcgtc gaaatggcac gacatggtcg ggccggaatt catcgtccgc 960 gcgttcgagt acgcgcacga ggccgatccc gacgcgctgc tgttctacaa cgactacaac 1020 gaatgcaatc ccgcgaagcg cgacaagatc atccgcctcg tgaaatggct caaagagcag 1080 ggcgcgccga tccacggcat cggcatgcag gggcactaca atctggcgtc gccgtccatc 1140 gccgaggtgc gcgaggcgat cgagaagtac gccgagctcg gcctggtcat tcatgtgacg 1200 gaactggaca tgtccgtcta cgcctgggat gaccggcgaa ccgatctgct cgagccgacg 1260 gcggaaatgg tggagcggca ggcggagctg tacgagcagc tgttctcgct ttaccgcgaa 1320 taccgggacg tcatccgcag cgtcacgttc tggggcgcgg cggacgatta tgcgtggctc 1380 agctatttcc cggtgcgcgg gcggcgcaac tggccgctgc tgttcgacgc gcagcaccgg 1440 ccgaaggagg cgttccggcg cgtcgtgcgg acggcgggcg ctgaagcttg agctggcgga 1500 aaccggcaat tgcagccggt ctgttccgga gaaacggacg gaccggctgt tgctgttccg 1560 cgggcttaga ttcgtgagca ccgccgcgtt acgcccggac ggttgttttt gcccttccgg 1620 agcggaattc gccgggcgtg aggccgatgt acttcttgaa ctgccgcatg aagtggacgt 1680 cgttctcgta tccgcactgt gcggcgatgt cgcggatgct gtcggacgtg tttttcagcc 1740 ggaacatcgc gtattcgacc gggttgtgga tgatgtcgtt catgaacgag atgccgaaca 1800 gttctttgta cagcttctgg aaatagggcc ggctcatgtt gacgcggccc gccagatcgc 1860 cgatcgtcca ggcgacggac gggttgctgt atatgtcgct gcgcagcgac acgagcagat 1920 cgtaatattt gctgaccggc ttgctcggct cgatccggtt gcggatgtcg ctgagcttca 1980 tgaggaggca gcggacggtc gcgtcgatga tctcgtcccg gtacagcccg ttctggacca 2040 gcgcttcctg gatttcgctc actttccgcg acacatatac cggttcatgc accttcatcg 2100 gcgtgtccag cggcagattc agtttccggc agaacgtctc gacatcctcg ccgtcaaaat 2160 ggaaccagtc gtgcaccatc ggctgttcga tgtcatggta gtattgccgg cttccttttc 2220 cggtaaatga tgcaggtgtt cttgtccgtc aggaagcgct ctccctgcgc ttcgacgcac 2280 atgcgcctgc ggaagaacag gaacagataa tcgcccgacc cgtgcggccg gtcgatgacg 2340 atgccttccg gatggccgac gttgtagccg caccggttca tctggaacat cgcgccaccc 2400 ccttgaagtc gagagatcag tgattgatta tgatagatca tttcgccaat gcgatcaaac 2460 ctttacggtg attagtgaag acgagagtcg cggggattcg aatatgagag ttgcacggcc 2520 cgcagaagat aatctttcag caaaatgaag gagcgatgaa cgtggcaagc cgggtagtcg 2580 taaacgccga cagggtgaag ggcacgatca accgcaacat ttacggccat ttctcggaac 2640 atctcgggcg atgcatctac gaagggctgt gggtcggaga agattcgccg attccgaata 2700 cgaacgggat ccgaaacgac gtgctcgagg cgctgaagca gatgaaaatt ccggtcctcc 2760 gctggccggg cggctgcttc gcggacgaat accattggaa agacggcgtc ggcccacggg 2820 agaagcggaa gcggatggtg aacacgcact ggggcggcgt catcgagaac aaccatttcg 2880 gcacccatga gttcatgatg ctgtgcgagc tgctcggctg cgaaccgtac atcagcggca 2940 acgtgggcag cggcaccgtg caggagatgt ccgaatgggt cgagtacatt acgttcgacg 3000 gcgaatcgcc gatggcgaac tggcgcaggg agaacggacg ggagaagccg tggcgcatca 3060 agtactgggg cgtcggcaac gagaactggg gctgcggcgg caacatgcgc gcggaatatt 3120 acgccgatct gtaccgccag ttccagacgt atctgcgcaa ctacggcgac aacaagctgc 3180 acaagattgc gtgcggcgcg aacacggccg actaccattg gacggaagtg ctgatgaagc 3240 aggccgcgcc gttcatgcac gggctgtcgc tgcactatta caccgttccg ggcccctggg 3300 agaagaaagg acccgcgacc ggcttcacga cggatgaatg gtgggtcacg ctgaagaagg 3360 cgctgttcat ggacaggctc gtcacgaagc attcggccat catggacgtc tacgatccgg 3420 acaagcggat cgatctgatc gtggacgaat ggggcacgtg gtatgacgtc gaaccgggca 3480 cgaatccggg cttcctgtat cagcagaact cgatccgcga cgcgcttgtc gcgggcgcga 3540 cgctgcacat tttccaccgc cattgcgacc gcgtccggat ggcgaacatc gcccagctcg 3600 tcaacgtgct gcaatccgtc atcctgacgg agggcgagcg gatgctgctg acgccgacct 3660 accatgtgtt caacatgttc aaggtgcatc aggatgcgga actgctcgat acatgggagt 3720 ctgtggagcg cacgggtccg gaaggcgagc tgccgaaggt atcggtctcc gcttcccgcg 3780 cggcggacgg caagatccac atcagtctgt gcaatctgga cttcgagacc ggagcaagcg 3840 tggacatcga gctgcgcggc ctgaacggcg gcgtgagcgc aaccggcacg acgctgacgt 3900 cgggccgcat cgacgggcac aacacgttcg acgagcccga gcgggtgaaa ccggccccgt 3960 tccgcgactt caaactcgag ggcgggcacc tgaacgcatc gctgccgccg atgtccgtga 4020 cggtgcttga gctgacggcg gggtgagcgg cggatgacgg cggaacgccc gtgcagaggc 4080 tgcaggtctg acgcgcacgt gtcggaagaa cgcatccggg cgatgctcgc cgcgccgatg 4140 ttcgcggaat caagcgggct gtgcgtgccg gacgacgtct atgagatgcg gctggacctc 4200 tgccggtcct gtccgaagct gattggcggc catacatgcg cggtctgcgg ctgcatcgtt 4260 ccgatccaaa gaattcaaaa agcttctcga gagtacttct agagcggccg cgggcccatc 4320 gattttccac ccgggtgggg taccaggtaa gtgtacccaa ttcgccctat agtgagtcgt 4380 attac 4385 // |
|