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EBI DbfetchID Y10689; SV 1; linear; genomic DNA; STD; PRO; 3858 BP. XX AC Y10689; XX DT 01-AUG-1998 (Rel. 56, Created) DT 01-AUG-1998 (Rel. 56, Last updated, Version 1) XX DE C.difficile tcdA, tdcC genes and partial cdd1 gene XX KW cdd1 gene; tcdA gene; tcdC gene. XX OS Clostridium difficile OC Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; OC Clostridium. XX RN [1] RA Soehn F., Leukel P., Weidmann M., Eichel-Streiber C.V., Braun V.; RT ; RL Unpublished. XX RN [2] RP 1-3858 RA von Eichel-Streiber C.; RT ; RL Submitted (22-JAN-1997) to the EMBL/GenBank/DDBJ databases. RL C. Von Eichel-Streiber, Institut Fuer Medizinische Mikrobiologie, AG von RL Eichel-Streiber, Hochhaus am Augustusplatz, 55101 Mainz, FRG XX CC Related sequence X92982 XX FH Key Location/Qualifiers FH FT source 1..3858 FT /organism="Clostridium difficile" FT /strain="8864" FT /mol_type="genomic DNA" FT /db_xref="taxon:1496" FT misc_feature 1..3542 FT /note="3-part of pathogenicity locus" FT RBS 12..16 FT /gene="tcdA" FT /note="putative" FT CDS <22..2117 FT /codon_start=3 FT /transl_table=11 FT /gene="tcdA" FT /product="TcdA protein" FT /db_xref="InterPro:IPR007577" FT /db_xref="UniProtKB/TrEMBL:O86141" FT /protein_id="CAA71690.1" FT /translation="VLISKEELIKLAYSIRPRENEYKTVLTNLDEYNKLTTNNNENKYL FT QLKKLNESIDVFMNKYKNSSRNRALSNLKKDILKEVILIKNSNTSPVEKNLHFVWIGGE FT VSDIVLEYIKQWADINAEYNIRLWYDSEAFLVNTLKKAIVESSTTEALQLLEEEIQNPQ FT FDNMKFYKKRMEFIYDRQKRFINYYKSQINKPTVLTIDDIIKSYLISEYNRDETLLESY FT RTNSLRKINSNHGIDVRANSLFTEQELLNIYNQELLNRGNLAAASDIVRLLALKNFGGV FT YLDVDMLPGIHSDLFKTISRPSSIGLDRWEMIKLEAIMKYKKYINNYTSENFDKLDQQL FT KDNFKLIIESKSEKCEIFSKLENLNVSDLEIKIRFALGSVINQALISKKGSYLTNLVIE FT QIKNRYQFLNQHLNPAIESDNNFTDTTKIFHDSLFNSATAENSMFLTKIAPYLQVGFMP FT EARSTISLSGPGAYASAYYDFINLQENTIEKTLKASDLIEFKFPENNLSQLTEQEINSL FT WSFDQASAKYQFEKYVKDYTGGSLSEDNEVDFNKNTALDKNYLLNNKIPSNNVEEAGSK FT NYVHYIIQLQGDDISYEATCNLFSKNPKNSIIIQRNMNESAKSHFLSDDGESILELNKY FT RIPERLKNKEKVKVTFIGHGKDEFNTSEFARLSVDSLSNEISSFLDTIKLDISPKNVEV FT NLL" FT variation 2860^2861 FT /note="5869bp deletion compared to strain VPI10463" FT CDS complement(3246..3311) FT /transl_table=11 FT /gene="tcdC" FT /product="TcdC protein" FT /db_xref="UniProtKB/TrEMBL:O86142" FT /protein_id="CAA71691.1" FT /translation="MFSKKMRVTNLVMKEKEILRK" FT RBS complement(3321..3325) FT /gene="tcdC" FT /note="putative" FT RBS 3715..3721 FT /gene="cdd1" FT /note="putative" FT CDS 3729..>3858 FT /transl_table=11 FT /gene="cdd1" FT /product="Cdd1 protein" FT /db_xref="GOA:Q799T0" FT /db_xref="InterPro:IPR003583" FT /db_xref="UniProtKB/TrEMBL:Q799T0" FT /protein_id="CAA71692.1" FT /translation="MGELQKIPGVGKATEKSLIMLGYTTIKSLKDANPAQMYEKECL" XX SQ Sequence 3858 BP; 1580 A; 470 C; 534 G; 1274 T; 0 other; taataatact aggaggtttt tatgtcttaa tatctaaaga agagttaata aaactcgcat 60 atagcattag accaagagaa aatgagtata aaactgtact aactaattta gacgaatata 120 ataagttaac tacaaacaat aatgaaaata aatatttaca attaaaaaaa ctaaatgaat 180 caattgatgt ttttatgaat aaatataaaa attcaagcag aaatagagca ctctctaatc 240 taaaaaaaga tatattaaaa gaagtaattc ttattaaaaa ttccaataca agtcctgtag 300 aaaaaaattt acattttgta tggataggtg gagaagtcag tgatattgtt cttgaataca 360 taaaacaatg ggctgatatt aatgcagaat ataatattag actgtggtat gatagtgaag 420 cattcttagt taatacacta aaaaaggcta tagttgagtc ttctaccact gaagcattac 480 agctactaga agaagagatt caaaatcctc aatttgataa tatgaaattt tacaaaaaaa 540 ggatggaatt tatatatgat agacaaaaaa ggtttataaa ttattataaa tctcaaatca 600 ataaacctac agtacttaca atagatgata ttataaagtc ttatctgata tctgaatata 660 atagagatga aactttatta gaatcatata gaacaaattc tttgagaaaa ataaatagta 720 accatgggat agatgtcaga gctaatagct tgtttacaga acaagagtta ttaaatattt 780 ataatcagga gttgttaaat cgtggaaatt tagctgcagc atctgacata gtaagattat 840 tagccctaaa aaattttggc ggagtatatt tagatgttga tatgcttcca ggtattcact 900 ctgatttatt taaaacaata tctagaccta gctctattgg actagaccgt tgggaaatga 960 taaaattaga ggctattatg aagtataaaa aatatataaa taattataca tcagaaaact 1020 ttgataaact tgatcaacaa ttaaaagata attttaaact cattatagaa agtaaaagtg 1080 aaaaatgtga gatattttct aaattagaaa atttaaatgt atctgatctt gaaattaaaa 1140 tacgtttcgc tttaggcagt gttataaatc aagccttgat atcaaaaaaa ggttcatatc 1200 ttactaacct agtaatagaa caaataaaaa atagatatca atttttaaac caacacctta 1260 acccagccat agagtctgac aataacttca cagatactac taaaattttt catgattcac 1320 tatttaattc agctactgca gaaaactcta tgtttttaac taaaatagca ccatacttac 1380 aagtaggttt tatgccagaa gctcgctcca caataagttt aagtggtcca ggagcttatg 1440 catcagctta ctatgatttc ataaatttac aagaaaatac tatagaaaaa actttaaaag 1500 catcagattt aatagaattt aaattcccag aaaataatct ctctcaattg acagaacaag 1560 aaataaatag tctatggagc tttgatcaag caagtgcaaa atatcaattt gagaaatatg 1620 taaaagatta tactggtgga tctctttctg aagataatga ggtagacttt aataaaaata 1680 ctgccctcga taaaaactat ttattaaata ataaaattcc atcaaacaat gtagaagaag 1740 ctggaagtaa aaattatgtt cattatatca tacagttaca aggagatgat ataagttatg 1800 aagcaacatg caacctattt tctaaaaatc ctaaaaatag cattattata caacgaaata 1860 tgaatgaaag tgcaaaaagt cactttttaa gtgatgatgg agaatctatt ttagaattaa 1920 ataaatatag gatacctgaa agattaaaaa ataaggaaaa agtaaaagta acctttattg 1980 gacatggtaa agatgaattt aacacaagcg aatttgctag attaagtgta gattcacttt 2040 ccaatgagat aagttcattt ttagatacca taaaattaga tatatcacct aaaaatgtag 2100 aagtaaactt gctttgatgt aatatgttta gttatgattt taatgttgaa gaaacttatc 2160 ctggtaagtt actattaagt attatggaca aaattacttc cactttacct gatataaata 2220 aagattctat tactatagga gcaaaacaat atgaagtaag aattaatagt gagggaagaa 2280 aagaacttct agctcactca ggtaaatgga taaataaaga ggaagctatt atgagcgatt 2340 tatctagtaa agaatacatt ttttttgatt ctatagataa taagctaaaa gcaaagtcca 2400 agaatattcc aggattagca tcaatatcag aagatataaa aacattatta cttgatgcaa 2460 gtgttggtcc tgatacaaaa tttattttaa ataatcttaa gcttaatatt gaatcttcta 2520 ttggtgatta catttattat gaaaaattag aacctgttaa aaatataatt cacaattcta 2580 tagatgattt aatagatgag ttcaatctac ttgaaaatgt atctgatgaa ttatatgaat 2640 taaaaaaatt aaataatcta gatgagaagt atttaatatc ttttgaagat atctcaaaaa 2700 ataattcaac ttactctgta agatttatta acaaaagtaa tggtgaatca gtttatgtag 2760 aggcagaaaa agaaattttt tcaaaatata gcggacatat tacaaaagaa ataagtacta 2820 taaaaaatag tttaattaca gatgttaatg gtaatttatt ttaccttttg tactataatc 2880 atcaggtgtt ctagctaatt ggtcataagt aatatcagta tcatatcctt tcttctcttc 2940 ttctttttta cgttgttctt cagccttttt agcttcttca actttcttag cttcttcagc 3000 tttacgttga ttttcagctt caatagcttt cttttcgtcg tctttcattt tgaaccatgg 3060 ttcagcatca gacaatttgc tatttaaagt ttctatttct gctttttgag aatctataac 3120 tgatgtttga ttagaaatga cctcctcatg gtcttcagaa caagctggtg aggatatatt 3180 gccaaaaaac acacccaaaa taaatgccag tagagcaata ccctttgtgc tcttaaagaa 3240 tttaattatt ttcttagaat ttccttttcc ttcattacta aattcgttac cctcattttt 3300 ttagaaaaca taatacaatc tcccttttat tagatatatt ttattttaaa agttaaaaac 3360 ttaaaataac tagttgacta aaaattatat attcatattt tcctaaaata tatttcccct 3420 aagcataatt ttacaaaata aatcaagaag attcaatata ttttgaaaaa tgaggtaaaa 3480 atgtcagatt ataatataat tttcttgaag gtgaatttta tatattaaat gaaacataaa 3540 gtattttatt tgtataaaac tatattatga tgtaattaaa tgattcagta ctttagaggt 3600 ggtaaaatat agatagatga aaagcgataa ataaagtgat ataataaaaa attaaatatt 3660 aactataata aaaaaatatc tggtagtaac tataatacaa aaataatata tcagaaagaa 3720 ggtgaagtat gggagaacta caaaaaattc caggggtagg gaaagcaaca gaaaaatctt 3780 taatcatgtt aggatataca actattaaat cacttaaaga tgcaaaccca gcacaaatgt 3840 atgaaaagga atgtttaa 3858 // |
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